Citrus Sinensis ID: 041851

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
IFHLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHCTALESL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccHHHHccccccEEEcccccccccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccHHHHccccccEEcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHcccHHHccEEEccccccHcccccHHHHccccEEEccccccccccccHccccccHcccccccEEEccccccHHccHHHcccHHHcEEEccccccHcccHHHHHHHcccEEEccccccHcccccccccccEEccccccHHccc
Coil and Loop (DISEMBL)
ifhlqrlpdeLGNLEALWSLHAIGTAirevpssffrlnnidllsfqrsrghkqmslslpitlsldglhtltylnltdcgitrlpenigqlssleeldlqennferipesitqrsklgrLSLRYCERLqslsklpcklheldahhctalesl
Flexible Loop (DISEMBL)
IFHLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFeripesitqrsklgrlsLRYCERLQSLsklpcklheldahhctalesl
Low Complexity Region (SEG)
IFHLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGqlssleeldlqeNNFERIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHCTALESL
Disordered region (IsUnstruct)
*********ELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSL*********************KLGRLSLRYCERLQSLSKLPCKLHELDAHHC******
Disordered Region (DISOPRED)
IFHLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHCTALESL
Disordered Region (DISEMBL)
IFHLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHCTALESL
Disordered Region (DISPRO)
IFHLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHCTA****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
IFHLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHCTALESL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	151	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.900	0.118	0.444	3e-20
Q7KRY7	1851	Protein lap4 OS=Drosophil	no	no	0.735	0.059	0.347	2e-08
B0W6M9	628	Leucine-rich repeat prote	N/A	no	0.860	0.207	0.333	6e-08
Q5F4C4	529	Leucine-rich repeat prote	yes	no	0.907	0.258	0.318	1e-07
B4LXW1	614	Leucine-rich repeat prote	N/A	no	0.821	0.201	0.335	2e-07
B4N9T4	641	Leucine-rich repeat prote	N/A	no	0.821	0.193	0.335	2e-07
Q9SCT4	836	Probably inactive leucine	no	no	0.735	0.132	0.358	3e-07
B4JTV9	622	Leucine-rich repeat prote	N/A	no	0.821	0.199	0.328	3e-07
B5DX45	629	Leucine-rich repeat prote	no	no	0.821	0.197	0.328	3e-07
B3LWU3	641	Leucine-rich repeat prote	N/A	no	0.821	0.193	0.328	4e-07

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/144 (44%), Positives = 84/144 (58%), Gaps = 8/144 (5%)

Query: 4   LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLS 63
           L+ LP+E+G+L+ L    A  T I   PSS  RLN + +L F   RG K   +       
Sbjct: 773 LESLPEEIGDLDNLRVFDASDTLILRPPSSIIRLNKLIILMF---RGFKD-GVHFEFPPV 828

Query: 64  LDGLHTLTYLNLTDCGITR--LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSL 121
            +GLH+L YLNL+ C +    LPE IG LSSL++LDL  NNFE +P SI Q   L  L L
Sbjct: 829 AEGLHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDL 888

Query: 122 RYCERLQSLSKLPCKLHEL--DAH 143
           + C+RL  L +LP +L+EL  D H
Sbjct: 889 KDCQRLTQLPELPPELNELHVDCH 912

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|Q7KRY7|LAP4_DROME Protein lap4 OS=Drosophila melanogaster GN=scrib PE=1 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 7/118 (5%)

Query: 4   LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLS 63
           + RLP ++ N E L  L      I ++P     L ++ +  F  +   K     LP   S
Sbjct: 72  IGRLPPDIQNFENLVELDVSRNDIPDIPDDIKHLQSLQVADFSSNPIPK-----LPSGFS 126

Query: 64  LDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSL 121
              L  LT L L D  +T LP + G L+ LE L+L+EN  + +PE+I+Q +KL RL L
Sbjct: 127 Q--LKNLTVLGLNDMSLTTLPADFGSLTQLESLELRENLLKHLPETISQLTKLKRLDL 182

Required for polarization of the embryonic, imaginal disk and follicular epithelia. Specifically restricts apical membrane determinants to the apical cell surface; acts to exclude crb from the basolateral domain and define adherens junction position. Regulates cellular growth and differentiation; acts as a tumor suppressor. Essential for odor guided behavior.

Drosophila melanogaster (taxid: 7227)

>sp|B0W6M9|SUR8_CULQU Leucine-rich repeat protein soc-2 homolog OS=Culex quinquefasciatus GN=Sur-8 PE=3 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 69/150 (46%), Gaps = 20/150 (13%)

Query: 4   LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSR----GHKQMSLSLP 59
           L  LPD L NL+AL  L      + E+P   ++L+ +  L  + +R    G    +LS  
Sbjct: 205 LTSLPDSLQNLKALKVLDLRHNKLSEIPDVIYKLHTLTTLYLRFNRIKVVGDNLKNLSSL 264

Query: 60  ITLSL------------DGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIP 107
             LSL              L  LT L+L+   +  LPE IG   +L  LDLQ N+   IP
Sbjct: 265 TMLSLRENKIHELPAAIGHLRNLTTLDLSHNHLKHLPEAIGNCVNLTALDLQHNDLLDIP 324

Query: 108 ESITQRSKLGRLSLRYCERLQSLSKLPCKL 137
           E+I   + L RL LRY      L+ +P  L
Sbjct: 325 ETIGNLANLQRLGLRY----NQLTAIPVSL 350

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Culex quinquefasciatus (taxid: 7176)

>sp|Q5F4C4|SHOC2_CHICK Leucine-rich repeat protein SHOC-2 OS=Gallus gallus GN=SHOC2 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 70/154 (45%), Gaps = 17/154 (11%)

Query: 4   LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSR---GHKQMSLSLPI 60
           L  LPD L NL+ L  L      +RE+PS  +RL ++  L  + +R     K +     +
Sbjct: 158 LTSLPDSLDNLKKLRMLDLRHNKLREIPSVVYRLTSLATLYLRFNRITTVEKDIKTLSKL 217

Query: 61  TL-------------SLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIP 107
           T+              +  L  L  L++    +  LPE IG  + +  LDLQ N    +P
Sbjct: 218 TMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPEEIGSCTQITNLDLQHNELLDLP 277

Query: 108 ESITQRSKLGRLSLRYCERLQSLSKLPCKLHELD 141
           E+I   S L RL LRY  RL ++ K   K  ELD
Sbjct: 278 ETIGNLSSLSRLGLRY-NRLSAIPKSLAKCSELD 310

Regulatory subunit of protein phosphatase 1 (PP1c) that acts as a M-Ras/MRAS effector and participates in MAPK pathway activation. Upon M-Ras/MRAS activation, targets PP1c to specifically dephosphorylate the 'Ser-259' inhibitory site of RAF1 kinase and stimulate RAF1 activity at specialized signaling complexes.

Gallus gallus (taxid: 9031)

>sp|B4LXW1|SUR8_DROVI Leucine-rich repeat protein soc-2 homolog OS=Drosophila virilis GN=Sur-8 PE=3 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 10/134 (7%)

Query: 4   LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLS 63
           LQ+LPD++ NL+ L  L      ++++P++   L  + +L  + +R        LP  + 
Sbjct: 447 LQKLPDDIMNLQNLEILILSNNMLKKIPNTIGNLRKLRILDLEENRIE-----VLPHEIG 501

Query: 64  LDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRY 123
           L  LH L  L L    IT LP +IG LS+L  L + ENN + +PE I     L  L   Y
Sbjct: 502 L--LHELQRLILQTNQITMLPRSIGHLSNLTHLSVSENNLQFLPEEIGSLESLENL---Y 556

Query: 124 CERLQSLSKLPCKL 137
             +   L KLP +L
Sbjct: 557 INQNPGLEKLPFEL 570

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila virilis (taxid: 7244)

>sp|B4N9T4|SUR8_DROWI Leucine-rich repeat protein soc-2 homolog OS=Drosophila willistoni GN=Sur-8 PE=3 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 10/134 (7%)

Query: 4   LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLS 63
           LQ+LPD++ NL+ L  L      ++++P++   L  + +L  + +R        LP  + 
Sbjct: 474 LQKLPDDIMNLQNLEILILSNNMLKKIPNTIGNLRKLRILDLEENRIE-----VLPHEIG 528

Query: 64  LDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRY 123
           L  LH L  L L    IT LP +IG LS L  L + ENN + +PE I     L  L   Y
Sbjct: 529 L--LHELQRLILQTNQITMLPRSIGHLSQLTHLSVSENNLQFLPEEIGSLESLENL---Y 583

Query: 124 CERLQSLSKLPCKL 137
             +   L KLP +L
Sbjct: 584 INQNPGLEKLPFEL 597

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila willistoni (taxid: 7260)

>sp|Q9SCT4|IMK2_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 63/120 (52%), Gaps = 9/120 (7%)

Query: 7   LPDELGNLEALWSLHAIGTAIR-EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLD 65
           +P E G L  L SL     +I   +P SF  L+++  L+ + +       L  PI  ++D
Sbjct: 279 IPRECGGLPHLQSLDFSYNSINGTIPDSFSNLSSLVSLNLESNH------LKGPIPDAID 332

Query: 66  GLHTLTYLNLTDCGITR-LPENIGQLSSLEELDLQENNFER-IPESITQRSKLGRLSLRY 123
            LH LT LNL    I   +PE IG +S +++LDL ENNF   IP S+   +KL   ++ Y
Sbjct: 333 RLHNLTELNLKRNKINGPIPETIGNISGIKKLDLSENNFTGPIPLSLVHLAKLSSFNVSY 392

Arabidopsis thaliana (taxid: 3702)

>sp|B4JTV9|SUR8_DROGR Leucine-rich repeat protein soc-2 homolog OS=Drosophila grimshawi GN=Sur-8 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 10/134 (7%)

Query: 4   LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLS 63
           LQ+LPD++ NL+ L  L      ++++P++   L  + +L  + +R        LP  + 
Sbjct: 455 LQKLPDDIMNLQNLEILILSNNMLKKIPNTIGNLRKLRILDLEENRIE-----VLPHEIG 509

Query: 64  LDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRY 123
           L  LH L  L L    IT LP ++G LS+L  L + ENN + +PE I     L  L   Y
Sbjct: 510 L--LHELQRLILQTNQITMLPRSVGHLSNLTHLSVSENNLQFLPEEIGSLESLENL---Y 564

Query: 124 CERLQSLSKLPCKL 137
             +   L KLP +L
Sbjct: 565 INQNPGLEKLPFEL 578

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila grimshawi (taxid: 7222)

>sp|B5DX45|SUR8_DROPS Leucine-rich repeat protein soc-2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=Sur-8 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 10/134 (7%)

Query: 4   LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLS 63
           LQ+LPD++ NL+ L  L      ++++P++   +  + +L  + +R        LP  + 
Sbjct: 462 LQKLPDDIMNLQNLEILILSNNMLKKIPNTIGNMRKLRILDLEENRIE-----VLPHEIG 516

Query: 64  LDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRY 123
           L  LH L  L L    IT LP +IG LS+L  L + ENN + +PE I     L  L   Y
Sbjct: 517 L--LHELQRLILQTNQITMLPRSIGHLSNLTHLSVSENNLQFLPEEIGSLEGLENL---Y 571

Query: 124 CERLQSLSKLPCKL 137
             +   L KLP +L
Sbjct: 572 INQNPGLEKLPFEL 585

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B3LWU3|SUR8_DROAN Leucine-rich repeat protein soc-2 homolog OS=Drosophila ananassae GN=Sur-8 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 10/134 (7%)

Query: 4   LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLS 63
           LQ+LPD++ NL+ L  L      ++++P++   L  + +L  + +R       +LP  + 
Sbjct: 474 LQKLPDDIMNLQNLEILILSNNMLKKIPNTIGNLRRLRILDLEENRIE-----TLPHEIG 528

Query: 64  LDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRY 123
           L  LH L  L L    IT LP +IG L +L  L + ENN + +PE I     L  L   Y
Sbjct: 529 L--LHELQRLILQTNQITMLPRSIGHLGNLTHLSVSENNLQFLPEEIGSLESLENL---Y 583

Query: 124 CERLQSLSKLPCKL 137
             +   L KLP +L
Sbjct: 584 INQNPGLEKLPFEL 597

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila ananassae (taxid: 7217)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
147787212	600	hypothetical protein VITISV_032562 [Viti	0.986	0.248	0.413	7e-21
357507537	1122	TMV resistance protein N [Medicago trunc	0.973	0.131	0.406	7e-21
451798990	1335	TMV resistance protein N-like protein 7	0.980	0.110	0.378	4e-20
359493483	1274	PREDICTED: TMV resistance protein N-like	0.980	0.116	0.378	5e-20
359493487	1162	PREDICTED: TMV resistance protein N-like	0.980	0.127	0.385	5e-20
451798988	1219	TMV resistance protein N-like protein 6	0.980	0.121	0.385	6e-20
359493293	1640	PREDICTED: TMV resistance protein N-like	0.980	0.090	0.391	2e-19
359496034	1132	PREDICTED: TMV resistance protein N-like	0.980	0.130	0.409	4e-19
296090597	1201	unnamed protein product [Vitis vinifera]	0.980	0.123	0.409	5e-19
357507435	1134	TMV resistance protein N [Medicago trunc	0.980	0.130	0.389	5e-19

>gi|147787212|emb|CAN75767.1| hypothetical protein VITISV_032562 [Vitis vinifera]

 Score =  105 bits (261), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 94/167 (56%), Gaps = 18/167 (10%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRG---HKQMSLS-- 57
            L  LP  LG+L+ L  L A GTAI+E+P S   L N+++LSF+  +G   + + SL   
Sbjct: 409 KLDNLPKGLGSLQGLEKLEAAGTAIKELPPSISLLENLEVLSFEGCKGLESNPRNSLPSF 468

Query: 58  --LPITL---------SLDGLHTLTYLNLTDCGITR--LPENIGQLSSLEELDLQENNFE 104
             LP  +         S  GL +L  LNL+DC I    +P +   L SLE LDL  NNF 
Sbjct: 469 QLLPAEIGRSRGFQLHSFFGLRSLRKLNLSDCNILEGAIPNDFSSLCSLEYLDLSRNNFV 528

Query: 105 RIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHCTALESL 151
            +P S+ Q S+L  L L YC+RLQSL +LP  + E+DA  CT  E++
Sbjct: 529 TLPASLNQLSQLKGLRLGYCKRLQSLPELPSSIEEIDAPDCTVTENI 575

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507537|ref|XP_003624057.1| TMV resistance protein N [Medicago truncatula] gi|355499072|gb|AES80275.1| TMV resistance protein N [Medicago truncatula]

 Score =  105 bits (261), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 93/165 (56%), Gaps = 18/165 (10%)

Query: 4   LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLS-LPITL 62
           L RLPD L  ++ L  LHA  TAI E+PS  F L+N+ +LSF   +G   MS +  P   
Sbjct: 787 LCRLPDGLKEIQCLKELHANDTAIDELPSFIFYLDNLKVLSFAGCQGPPAMSTNWFPFNW 846

Query: 63  SLDG---------------LHTLTYLNLTDCGITR--LPENIGQLSSLEELDLQENNFER 105
              G               LH+L YLNL+ C ++   +P     LSSL+ LDL  NNF  
Sbjct: 847 MFGGQSASTGFRLPTSFLSLHSLKYLNLSYCNLSEESIPNYFHHLSSLKSLDLTGNNFVI 906

Query: 106 IPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHCTALES 150
           IP SI++ S+L  L L +CE+LQ L +LP ++ +LDA +C +LE+
Sbjct: 907 IPSSISKLSRLRFLCLNWCEQLQLLPELPSRIMQLDASNCDSLET 951

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798990|gb|AGF69193.1| TMV resistance protein N-like protein 7 [Vitis labrusca]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 93/161 (57%), Gaps = 13/161 (8%)

Query: 4    LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITL- 62
            L+ LPD LG+L+ L  L+A G+ ++EVP S   L N+ +LS    +G +  S ++  +  
Sbjct: 879  LKDLPDNLGSLQCLTELNADGSGVQEVPPSITLLTNLQILSLAGCKGGESKSRNMIFSFH 938

Query: 63   ----------SLDGLHTLTYLNLTDCGITR--LPENIGQLSSLEELDLQENNFERIPESI 110
                      S  GL++L  L L  C ++   LP ++G + SLE LDL  N+F  IP S+
Sbjct: 939  SSPTEELRLPSFSGLYSLRVLILQRCNLSEGALPSDLGSIPSLERLDLSRNSFITIPASL 998

Query: 111  TQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHCTALESL 151
            +  S+L  L+L YC+ LQSL +LP  +  L+AH CT+LE+ 
Sbjct: 999  SGLSRLRSLTLEYCKSLQSLPELPSSVESLNAHSCTSLETF 1039

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493483|ref|XP_003634610.1| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera]

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 93/161 (57%), Gaps = 13/161 (8%)

Query: 4   LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITL- 62
           L+ LPD LG+L+ L  L+A G+ ++EVP S   L N+ +LS    +G +  S ++  +  
Sbjct: 808 LKDLPDNLGSLQCLTELNADGSGVQEVPPSITLLTNLQILSLAGCKGGESKSRNMIFSFH 867

Query: 63  ----------SLDGLHTLTYLNLTDCGITR--LPENIGQLSSLEELDLQENNFERIPESI 110
                     S  GL++L  L L  C ++   LP ++G + SLE LDL  N+F  IP S+
Sbjct: 868 SSPTEELRLPSFSGLYSLRVLILQRCNLSEGALPSDLGSIPSLERLDLSRNSFITIPASL 927

Query: 111 TQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHCTALESL 151
           +  S+L  L+L YC+ LQSL +LP  +  L+AH CT+LE+ 
Sbjct: 928 SGLSRLRSLTLEYCKSLQSLPELPSSVESLNAHSCTSLETF 968

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493487|ref|XP_003634612.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 92/161 (57%), Gaps = 13/161 (8%)

Query: 4   LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITL- 62
           L+ LPD+LG+L+ L  L+A G+ I+EVP S   L N+  LS    +G    S ++  +  
Sbjct: 814 LKELPDDLGSLQCLAELNADGSGIQEVPPSITLLTNLQKLSLAGCKGGDSKSRNMVFSFH 873

Query: 63  ----------SLDGLHTLTYLNLTDCGITR--LPENIGQLSSLEELDLQENNFERIPESI 110
                     S  GL++L  L L  C ++   LP ++G + SLE LDL  N+F  IP S+
Sbjct: 874 SSPTEELRLPSFSGLYSLRVLILQRCNLSEGALPSDLGSIPSLERLDLSRNSFITIPASL 933

Query: 111 TQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHCTALESL 151
           +  S+L  L+L YC+ LQSL +LP  +  L+AH CT+LE+ 
Sbjct: 934 SGLSRLRSLTLEYCKSLQSLPELPSSVESLNAHSCTSLETF 974

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798988|gb|AGF69192.1| TMV resistance protein N-like protein 6 [Vitis labrusca]

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 92/161 (57%), Gaps = 13/161 (8%)

Query: 4    LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITL- 62
            L+ LPD+LG+L+ L  L+A G+ I+EVP S   L N+  LS    +G    S ++  +  
Sbjct: 871  LKELPDDLGSLQCLAELNADGSGIQEVPPSITLLTNLQKLSLAGCKGGDSKSRNMVFSFH 930

Query: 63   ----------SLDGLHTLTYLNLTDCGITR--LPENIGQLSSLEELDLQENNFERIPESI 110
                      S  GL++L  L L  C ++   LP ++G + SLE LDL  N+F  IP S+
Sbjct: 931  SSPTEELRLPSFSGLYSLRVLILQRCNLSEGALPSDLGSIPSLERLDLSRNSFITIPASL 990

Query: 111  TQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHCTALESL 151
            +  S+L  L+L YC+ LQSL +LP  +  L+AH CT+LE+ 
Sbjct: 991  SGLSRLRSLTLEYCKSLQSLPELPSSVESLNAHSCTSLETF 1031

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493293|ref|XP_002273413.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 94/166 (56%), Gaps = 18/166 (10%)

Query: 4    LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRG------------- 50
            L +LP++LG L+ L  L A GTAI + P S F L N+  LSF+R +G             
Sbjct: 849  LSKLPEDLGRLQFLMKLQADGTAITQPPLSLFHLRNLKELSFRRCKGSTSNSWISSLLFR 908

Query: 51   --HKQMSLSLPITLS-LDGLHTLTYLNLTDCGIT--RLPENIGQLSSLEELDLQENNFER 105
              H++ S    + L  L GL++L YL+L+ C +T   + +N+G L  LEEL+L  NN   
Sbjct: 909  LLHRENSDGTGLQLPYLSGLYSLKYLDLSGCNLTDRSINDNLGHLRFLEELNLSRNNLVT 968

Query: 106  IPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHCTALESL 151
            +PE + + S L  +S+  C+ LQ +SKLP  +  LDA  C +LESL
Sbjct: 969  VPEEVNRLSHLRVISVNQCKSLQEISKLPPSIKLLDAGDCISLESL 1014

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496034|ref|XP_002277500.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 94/161 (58%), Gaps = 13/161 (8%)

Query: 4   LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGH----------KQ 53
           ++  P+  GNLE L  L+A  TAI  +PSS   L  + +LSF   +G           ++
Sbjct: 688 VENFPENFGNLEQLKELYADETAISALPSSICHLRILQVLSFNGCKGPPSASWLTLLPRK 747

Query: 54  MSLSLPITLS-LDGLHTLTYLNLTDCGITRLPE--NIGQLSSLEELDLQENNFERIPESI 110
            S S    LS L GL +L  LNL DC I+   +  ++  LSSLE LDL  NNF  +P S+
Sbjct: 748 SSNSGKFLLSPLSGLGSLKELNLRDCNISEGADLSHLAILSSLEYLDLSGNNFISLPSSM 807

Query: 111 TQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHCTALESL 151
           +Q S+L  L L+ C RLQ+LS+LP  + E+DAH+C +LE++
Sbjct: 808 SQLSQLVSLKLQNCRRLQALSELPSSIKEIDAHNCMSLETI 848

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090597|emb|CBI40966.3| unnamed protein product [Vitis vinifera]

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 94/161 (58%), Gaps = 13/161 (8%)

Query: 4   LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGH----------KQ 53
           ++  P+  GNLE L  L+A  TAI  +PSS   L  + +LSF   +G           ++
Sbjct: 714 VENFPENFGNLEQLKELYADETAISALPSSICHLRILQVLSFNGCKGPPSASWLTLLPRK 773

Query: 54  MSLSLPITLS-LDGLHTLTYLNLTDCGITRLPE--NIGQLSSLEELDLQENNFERIPESI 110
            S S    LS L GL +L  LNL DC I+   +  ++  LSSLE LDL  NNF  +P S+
Sbjct: 774 SSNSGKFLLSPLSGLGSLKELNLRDCNISEGADLSHLAILSSLEYLDLSGNNFISLPSSM 833

Query: 111 TQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHCTALESL 151
           +Q S+L  L L+ C RLQ+LS+LP  + E+DAH+C +LE++
Sbjct: 834 SQLSQLVSLKLQNCRRLQALSELPSSIKEIDAHNCMSLETI 874

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507435|ref|XP_003624006.1| TMV resistance protein N [Medicago truncatula] gi|87162908|gb|ABD28703.1| TIR [Medicago truncatula] gi|355499021|gb|AES80224.1| TMV resistance protein N [Medicago truncatula]

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 96/167 (57%), Gaps = 19/167 (11%)

Query: 4   LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLS--LPIT 61
           L RLPD L  ++ L  LHA  TAI E+PSS F L+++ +LSF   +G    S++  LP  
Sbjct: 781 LCRLPDGLKEIKCLEELHANDTAIDELPSSIFYLDSLKVLSFAGCQGPSTTSMNWFLPFN 840

Query: 62  L---------------SLDGLHTLTYLNLTDCGITR--LPENIGQLSSLEELDLQENNFE 104
           L               S+ GL +L YLNL+ C ++    P     LSSL+ LDL  NNF 
Sbjct: 841 LMFGSQPASNGFRLPSSVMGLPSLEYLNLSYCNLSEESFPNYFHHLSSLKSLDLTGNNFV 900

Query: 105 RIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHCTALESL 151
            IP SI++ S+L  L L +C++LQ L +LP  + +L+A +C +L+++
Sbjct: 901 IIPSSISKLSRLRFLCLNWCQKLQLLPELPLTMTQLNASNCDSLDTM 947

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.900	0.118	0.395	7.1e-17
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.953	0.118	0.355	5e-15
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.973	0.113	0.348	1e-13
TAIR|locus:2122965	1210	AT4G19510 [Arabidopsis thalian	0.953	0.119	0.344	1.8e-12
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.966	0.122	0.339	2.9e-12
TAIR|locus:2205824	1384	AT1G27170 [Arabidopsis thalian	0.980	0.106	0.301	1.1e-10
TAIR|locus:2205804	1556	AT1G27180 [Arabidopsis thalian	0.980	0.095	0.301	2.6e-10
TAIR|locus:2081790	1253	AT3G51560 [Arabidopsis thalian	0.986	0.118	0.323	1.4e-09
TAIR|locus:2133742	1039	AT4G09430 [Arabidopsis thalian	0.973	0.141	0.279	4.9e-09
TAIR|locus:2081810	1226	AT3G51570 [Arabidopsis thalian	0.337	0.041	0.411	2.1e-08

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 221 (82.9 bits), Expect = 7.1e-17, P = 7.1e-17
 Identities = 57/144 (39%), Positives = 75/144 (52%)

Query:     4 LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLS 63
             L+ LP+E+G+L+ L    A  T I   PSS  RLN + +L F   RG K   +       
Sbjct:   773 LESLPEEIGDLDNLRVFDASDTLILRPPSSIIRLNKLIILMF---RGFKD-GVHFEFPPV 828

Query:    64 LDGLHTLTYLNLTDCGITR--LPENIGXXXXXXXXXXXXNNFERIPESITQRSKLGRLSL 121
              +GLH+L YLNL+ C +    LPE IG            NNFE +P SI Q   L  L L
Sbjct:   829 AEGLHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDL 888

Query:   122 RYCERLQSLSKLPCKLHEL--DAH 143
             + C+RL  L +LP +L+EL  D H
Sbjct:   889 KDCQRLTQLPELPPELNELHVDCH 912

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 5.0e-15, P = 5.0e-15
 Identities = 53/149 (35%), Positives = 77/149 (51%)

Query:     4 LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLS-LPITL 62
             L+  P+   ++E+L  L    T+I E+P     L+NI   S   +  H  +S+  +P TL
Sbjct:   794 LEVFPEIKEDMESLEILLMDDTSITEMPK-MMHLSNIKTFSLCGTSSHVSVSMFFMPPTL 852

Query:    63 SLDGLHTLTYLNLTDCGITRLPENIGXXXXXXXXXXXXNNFERIPESITQRSKLGRLSLR 122
                G   LT L L+ C + +LP+NIG            NN E +PES  Q + L    L+
Sbjct:   853 ---GCSRLTDLYLSRCSLYKLPDNIGGLSSLQSLCLSGNNIENLPESFNQLNNLKWFDLK 909

Query:   123 YCERLQSLSKLPCKLHELDAHHCTALESL 151
             +C+ L+SL  LP  L  LDAH C +LE+L
Sbjct:   910 FCKMLKSLPVLPQNLQYLDAHECESLETL 938

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 52/149 (34%), Positives = 77/149 (51%)

Query:     4 LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLS 63
             ++ LP+ +GNL AL  L A  T IR  P S  RL  + +L+   S    +  L   +   
Sbjct:   892 IKELPENIGNLVALEVLQASRTVIRRAPWSIARLTRLQVLAIGNSFFTPE-GLLHSLCPP 950

Query:    64 LDGLHTLTYLNLTDCGITRLPENIGXXXXXXXXXXXXNNFERIPESITQRSKLGRLSLRY 123
             L     L  L+L++  +T +P +IG            NNFE IP SI + ++L RL+L  
Sbjct:   951 LSRFDDLRALSLSNMNMTEIPNSIGNLWNLLELDLSGNNFEFIPASIKRLTRLNRLNLNN 1010

Query:   124 CERLQSL-SKLPCKLHELDAHHCTALESL 151
             C+RLQ+L  +LP  L  +  H CT+L S+
Sbjct:  1011 CQRLQALPDELPRGLLYIYIHSCTSLVSI 1039

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2122965 AT4G19510 [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 51/148 (34%), Positives = 72/148 (48%)

Query:     4 LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLS 63
             L+ LP     +E L  L   GT+I++ P     L+N+ + SF R        L   + L 
Sbjct:   784 LESLPPIKEKMECLEILLMDGTSIKQTPEMSC-LSNLKICSFCRPVIDDSTGL---VVLP 839

Query:    64 LDGLHTLTYLNLTDCGITRLPENIGXXXXXXXXXXXXNNFERIPESITQRSKLGRLSLRY 123
               G   L+ L LT+C I +LP+               NN E +PESI +   L  L L++
Sbjct:   840 FSGNSFLSDLYLTNCNIDKLPDKFSSLRSLRCLCLSRNNIETLPESIEKLYSLLLLDLKH 899

Query:   124 CERLQSLSKLPCKLHELDAHHCTALESL 151
             C RL+SL  LP  L  LDAH C +LE++
Sbjct:   900 CCRLKSLPLLPSNLQYLDAHGCGSLENV 927

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 2.9e-12, P = 2.9e-12
 Identities = 54/159 (33%), Positives = 76/159 (47%)

Query:     4 LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRG-----------HK 52
             L+RL D LG LE+L +L A  TA+RE+PS+  +L  +  LS    +G            K
Sbjct:   708 LERLDDALGELESLTTLLADFTALREIPSTINQLKKLKRLSLNGCKGLLSDDIDNLYSEK 767

Query:    53 QMSLSLPITLSLDGLHTLTYLNLTDCGITR--LPENIGXXXXXXXXXXXXNNFERIPESI 110
               S+SL   +SL GL  +  L+L  C ++   +PE+IG            N+F  +P   
Sbjct:   768 SHSVSLLRPVSLSGLTYMRILSLGYCNLSDELIPEDIGSLSFLRDLDLRGNSFCNLPTDF 827

Query:   111 TQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHCTALE 149
                  LG L L  C +LQS+  LP  L  LD   C  L+
Sbjct:   828 ATLPNLGELLLSDCSKLQSILSLPRSLLFLDVGKCIMLK 866

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 48/159 (30%), Positives = 79/159 (49%)

Query:     4 LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLS------FQRSR----GHKQ 53
             L+RLP+  G+L++L  L+   T + E+P SF  L+N+ +L       F+ S     G  +
Sbjct:   988 LKRLPESFGDLKSLHRLYMKETLVSELPESFGNLSNLMVLEMLKKPLFRISESNVPGTSE 1047

Query:    54 MSLSLPITLSLDGLHTLTYLNLTDCGIT-RLPENIGXXXXXXXXXXXXNNFERIPESITQ 112
                 + +  S   L  L  L+     I+ ++P+++             N F  +P S+ +
Sbjct:  1048 EPRFVEVPNSFSKLLKLEELDACSWRISGKIPDDLEKLSCLMKLNLGNNYFHSLPSSLVK 1107

Query:   113 RSKLGRLSLRYCERLQSLSKLPCKLHELDAHHCTALESL 151
              S L  LSLR C  L+ L  LPCKL +L+  +C +LES+
Sbjct:  1108 LSNLQELSLRDCRELKRLPPLPCKLEQLNLANCFSLESV 1146

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2205804 AT1G27180 [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 48/159 (30%), Positives = 78/159 (49%)

Query:     4 LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLS------FQRSR----GHKQ 53
             L+RLP   G+L++L  L+   T + E+P SF  L+N+ +L       F+ S     G  +
Sbjct:  1162 LKRLPKSFGDLKSLHRLYMQETLVAELPESFGNLSNLMVLEMLKKPLFRISESNVPGTSE 1221

Query:    54 MSLSLPITLSLDGLHTLTYLNLTDCGIT-RLPENIGXXXXXXXXXXXXNNFERIPESITQ 112
                 + +  S   L  L  L+     I+ ++P+++             N F  +P S+ +
Sbjct:  1222 EPRFVEVPNSFSKLLKLEELDACSWRISGKIPDDLEKLSCLMKLNLGNNYFHSLPSSLVK 1281

Query:   113 RSKLGRLSLRYCERLQSLSKLPCKLHELDAHHCTALESL 151
              S L  LSLR C  L+ L  LPCKL +L+  +C +LES+
Sbjct:  1282 LSNLQELSLRDCRELKRLPPLPCKLEQLNLANCFSLESV 1320

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2081790 AT3G51560 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 53/164 (32%), Positives = 76/164 (46%)

Query:     3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFR-------LNNID--LLSFQRSRGHKQ 53
             HL      L +L  L      G +IREV +S  +       ++N++  LL+F  +   ++
Sbjct:   840 HLPMEISNLKSLVTLKLTDPSGMSIREVSTSIIQNGISEIGISNLNYLLLTFNENAEQRR 899

Query:    54 MSLSLPI--TLSLDGL----HTLTYLNLTDCGITRLPENIGXXXXXXXXXXXXNNFERIP 107
               L  P   + SL GL    + L  L+L +  +  +PE I             N F +IP
Sbjct:   900 EYLPRPRLPSSSLHGLVPRFYALVSLSLFNASLMHIPEEICSLPSVVLLDLGRNGFSKIP 959

Query:   108 ESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHCTALESL 151
             ESI Q SKL  L LR+C  L  L  LP  L  L+ H C +LES+
Sbjct:   960 ESIKQLSKLHSLRLRHCRNLILLPALPQSLKLLNVHGCVSLESV 1003

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2133742 AT4G09430 [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 43/154 (27%), Positives = 74/154 (48%)

Query:     4 LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLS 63
             ++ +P ++  L +L  +   G     +P +  +L  ++ L+ +  R  K + L  P TL+
Sbjct:   780 IREIPQDIDCLLSLRKMDLTGNDFVHLPKTMAQLTKLECLTLRNCRQLKALPLLTP-TLT 838

Query:    64 LDGLHT----LTYLNLTDC-GITRLPENIGXXXXXXXXXXXXNN-FERIPESITQRSKLG 117
             L GL      L  L + +C  +  L + +             N+ FERIP SI   S L 
Sbjct:   839 LPGLDNQPRGLIELCIDNCKNLQSLQDQLLCYNTSLAYLDLSNHDFERIPTSIRHLSSLN 898

Query:   118 RLSLRYCERLQSLSKLPCKLHELDAHHCTALESL 151
              L L+ C++L+ + +LP  L+ L AH C  LE++
Sbjct:   899 TLCLKNCKKLKYVEELPLSLNHLYAHGCDYLENV 932

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2081810 AT3G51570 [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
 Identities = 21/51 (41%), Positives = 35/51 (68%)

Query:   101 NNFERIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHCTALESL 151
             ++   +P++I+Q S+L  L L+YC+ L S+ KLP  L  LDAH C +L+++
Sbjct:   821 DHISSLPDNISQLSQLKWLDLKYCKSLTSIPKLPPNLQHLDAHGCCSLKTV 871

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0016020 "membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00038324001 SubName- Full=Chromosome undetermined scaffold_92, whole genome shotgun sequence; (468 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	151
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-05
PLN03210	1153	PLN03210, PLN03210, Resistant to P	8e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 40/118 (33%), Positives = 58/118 (49%), Gaps = 9/118 (7%)

Query: 7   LPDELGNLEALWSLHAI-GTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLD 65
           +P E+G L +L  L  +       +PSS   L N+  L         Q  LS PI  S+ 
Sbjct: 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY------QNKLSGPIPPSIF 281

Query: 66  GLHTLTYLNLTDCGIT-RLPENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSL 121
            L  L  L+L+D  ++  +PE + QL +LE L L  NNF  +IP ++T   +L  L L
Sbjct: 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339

Length = 968

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 16/122 (13%)

Query: 33  SFFRLNNIDLLSFQRSRGHKQM-SLSLPITLSLDGLHTLTYLNLTDC-GITRLPENIGQL 90
           S   L NIDL   + S+  K++  LS+   L          L L+DC  +  LP +I  L
Sbjct: 632 SLTGLRNIDL---RGSKNLKEIPDLSMATNLE--------TLKLSDCSSLVELPSSIQYL 680

Query: 91  SSLEELDLQE-NNFERIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHCTALE 149
           + LE+LD+    N E +P  I  +S L RL+L  C RL+S   +   +  LD    TA+E
Sbjct: 681 NKLEDLDMSRCENLEILPTGINLKS-LYRLNLSGCSRLKSFPDISTNISWLDLDE-TAIE 738

Query: 150 SL 151
             
Sbjct: 739 EF 740

syringae 6; Provisional. Length = 1153

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 67  LHTLTYLNLTDCGIT-RLPENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSL 121
           L  L  +NL+   I   +P ++G ++SLE LDL  N+F   IPES+ Q + L  L+L
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 38.4 bits (89), Expect = 6e-04
 Identities = 23/74 (31%), Positives = 34/74 (45%)

Query: 60  ITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRL 119
           +   L  L  L  L+L+   ++ LP+ +  LS+L  LDL  N    +P  I   S L  L
Sbjct: 155 LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEEL 214

Query: 120 SLRYCERLQSLSKL 133
            L     ++ LS L
Sbjct: 215 DLSNNSIIELLSSL 228

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.59
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.55
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.55
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.4
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.34
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.3
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.28
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.27
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.25
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.2
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.19
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.17
PLN03150	623	hypothetical protein; Provisional	99.13
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.13
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.07
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.05
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.97
PLN03150	623	hypothetical protein; Provisional	98.97
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.96
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.95
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.91
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.9
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.9
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.87
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.79
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.77
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.76
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.7
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.69
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.59
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.59
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.55
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.5
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.39
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.38
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.34
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.31
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.28
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.28
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.27
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.19
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.15
PRK15386	426	type III secretion protein GogB; Provisional	98.13
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.1
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.09
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.09
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.01
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.0
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.89
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.78
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.64
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.58
PRK15386	426	type III secretion protein GogB; Provisional	97.55
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.47
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.47
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.38
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.04
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.94
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.81
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.55
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.52
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.49
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.07
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.81
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.29
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.51
smart00370	26	LRR Leucine-rich repeats, outliers.	94.51
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.45
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.82
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.81
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.58
KOG1947	482	consensus Leucine rich repeat proteins, some prote	91.82
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.01
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	89.87
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	89.43
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.71
KOG4341	483	consensus F-box protein containing LRR [General fu	88.5
KOG4341	483	consensus F-box protein containing LRR [General fu	87.81
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	86.5
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.83
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	82.26

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=3e-18  Score=109.29  Aligned_cols=135  Identities=30%  Similarity=0.410  Sum_probs=104.4

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      ++.-+|..+..+++|+.|++.+|.++++|.+++.+++|+++++..|+.     ...|  ..|+.++.|+.+++++|++.+
T Consensus        44 Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl-----~~lp--rgfgs~p~levldltynnl~e  116 (264)
T KOG0617|consen   44 KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL-----NILP--RGFGSFPALEVLDLTYNNLNE  116 (264)
T ss_pred             ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh-----hcCc--cccCCCchhhhhhcccccccc
Confidence            456678888888888888888888888888888888888888887762     2345  678888889999999988886


Q ss_pred             --cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCC---CCCcceEcccCC
Q 041851           83 --LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKL---PCKLHELDAHHC  145 (151)
Q Consensus        83 --~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l~~l~l~~~  145 (151)
                        +|..+..|+.|+.|+++.|.+..+|..++.+++|+.|.+..|. +-.+|+-   ...|+.|.++++
T Consensus       117 ~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  117 NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccc
Confidence              7778888888888888888888888888888888888888874 4445542   244555555544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.59  E-value=5.1e-15  Score=118.41  Aligned_cols=134  Identities=25%  Similarity=0.415  Sum_probs=73.4

Q ss_pred             CCChhccCcccccccccccccce-ecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-c
Q 041851            6 RLPDELGNLEALWSLHAIGTAIR-EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-L   83 (151)
Q Consensus         6 ~lp~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~   83 (151)
                      .+|..++.+++|++|++++|.+. .+|..+..+++|++|++.+|.    +.+..|  ..++.+++|+.+++++|.+.+ +
T Consensus       155 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~----l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~  228 (968)
T PLN00113        155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ----LVGQIP--RELGQMKSLKWIYLGYNNLSGEI  228 (968)
T ss_pred             cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC----CcCcCC--hHHcCcCCccEEECcCCccCCcC
Confidence            35556666666667777666655 556666666666666666554    333344  445555555666665555554 5


Q ss_pred             CcccCCCCCCCEEeCCCCCCc-cCCcchhccCccCEEeccCCcccccCCCC---CCCcceEcccCC
Q 041851           84 PENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSLRYCERLQSLSKL---PCKLHELDAHHC  145 (151)
Q Consensus        84 ~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l~~l~l~~~  145 (151)
                      |..++.+++|++|++++|.++ .+|..++.+++|+.|++++|.....+|..   +.+|++|++++|
T Consensus       229 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  294 (968)
T PLN00113        229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN  294 (968)
T ss_pred             ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence            555555555555555555554 44555555555555555555433333321   234444444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.55  E-value=5.1e-17  Score=103.69  Aligned_cols=135  Identities=25%  Similarity=0.374  Sum_probs=116.0

Q ss_pred             ccCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            2 FHLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         2 ~~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      .+|+++|..++++++|+.|++..|++...|..|+.++.|+.+++++|...   ....|  ..|..|..|+.+.+++|...
T Consensus        66 nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~---e~~lp--gnff~m~tlralyl~dndfe  140 (264)
T KOG0617|consen   66 NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLN---ENSLP--GNFFYMTTLRALYLGDNDFE  140 (264)
T ss_pred             chhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccc---cccCC--cchhHHHHHHHHHhcCCCcc
Confidence            47899999999999999999999999999999999999999999988632   23566  78888999999999999999


Q ss_pred             ccCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCCCCCcceEcccCC
Q 041851           82 RLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHC  145 (151)
Q Consensus        82 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~l~~~  145 (151)
                      -+|+.++.+++|+.|.+..|.+-++|..++.++.|+.|.+++| .+.-+|+   .+..+++.+.
T Consensus       141 ~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn-rl~vlpp---el~~l~l~~~  200 (264)
T KOG0617|consen  141 ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN-RLTVLPP---ELANLDLVGN  200 (264)
T ss_pred             cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc-eeeecCh---hhhhhhhhhh
Confidence            8999999999999999999999999999999999999999998 4555554   3444444433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.55  E-value=2.1e-14  Score=114.98  Aligned_cols=120  Identities=25%  Similarity=0.395  Sum_probs=67.8

Q ss_pred             CCChhccCcccccccccccccce-ecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-c
Q 041851            6 RLPDELGNLEALWSLHAIGTAIR-EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-L   83 (151)
Q Consensus         6 ~lp~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~   83 (151)
                      .+|..+..+++|++|++++|.+. .+|..+..+.+|+.+++..|.    +.+..|  ..++.+++|+.|++++|.+.+ +
T Consensus       179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~----l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~  252 (968)
T PLN00113        179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN----LSGEIP--YEIGGLTSLNHLDLVYNNLTGPI  252 (968)
T ss_pred             cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc----cCCcCC--hhHhcCCCCCEEECcCceecccc
Confidence            45666666777777777776665 456666666667776666554    333444  445555555555555555554 4


Q ss_pred             CcccCCCCCCCEEeCCCCCCc-cCCcchhccCccCEEeccCCcccccCC
Q 041851           84 PENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSLRYCERLQSLS  131 (151)
Q Consensus        84 ~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~  131 (151)
                      |..++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.....+|
T Consensus       253 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  301 (968)
T PLN00113        253 PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP  301 (968)
T ss_pred             ChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC
Confidence            555555555555555555554 444445555555555555554333333

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.40  E-value=1.2e-13  Score=89.68  Aligned_cols=129  Identities=25%  Similarity=0.349  Sum_probs=48.8

Q ss_pred             CCCCChhccCcccccccccccccceecChhhh-cCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            4 LQRLPDELGNLEALWSLHAIGTAIREVPSSFF-RLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         4 l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~-~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      |+.+|.. .+..+++.|++++|.|+.+.. +. .+.+|+.++++.|....     +   +.+..++.|+.|++++|.+++
T Consensus         9 i~~~~~~-~n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~-----l---~~l~~L~~L~~L~L~~N~I~~   78 (175)
T PF14580_consen    9 IEQIAQY-NNPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITK-----L---EGLPGLPRLKTLDLSNNRISS   78 (175)
T ss_dssp             ----------------------------S---TT-TT--EEE-TTS--S----------TT----TT--EEE--SS---S
T ss_pred             ccccccc-ccccccccccccccccccccc-hhhhhcCCCEEECCCCCCcc-----c---cCccChhhhhhcccCCCCCCc
Confidence            3445533 455678999999999987643 44 57899999999887322     1   456778999999999999998


Q ss_pred             cCccc-CCCCCCCEEeCCCCCCccCCc--chhccCccCEEeccCCcccccCCC-------CCCCcceEccc
Q 041851           83 LPENI-GQLSSLEELDLQENNFERIPE--SITQRSKLGRLSLRYCERLQSLSK-------LPCKLHELDAH  143 (151)
Q Consensus        83 ~~~~~-~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~-------~~~~l~~l~l~  143 (151)
                      +...+ ..+++|+.|++++|.+..+..  .+..+++|+.|++.+|+.... +.       .+++|+.||-.
T Consensus        79 i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   79 ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred             cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence            76555 368999999999999985433  567889999999999986543 32       13777777654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.34  E-value=1e-13  Score=103.89  Aligned_cols=137  Identities=24%  Similarity=0.308  Sum_probs=85.8

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      ++..+|+.++.+.+|++|.+++|.+..+-..+..++.|+.+.+..|..-.   ..+|  ..+..+..|+.++++.|.+++
T Consensus        43 ~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKn---sGiP--~diF~l~dLt~lDLShNqL~E  117 (1255)
T KOG0444|consen   43 KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKN---SGIP--TDIFRLKDLTILDLSHNQLRE  117 (1255)
T ss_pred             hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcccccc---CCCC--chhcccccceeeecchhhhhh
Confidence            45556666666666666666666665554455556666666655554111   1233  445566777777777777777


Q ss_pred             cCcccCCCCCCCEEeCCCCCCccCCcc-hhccCccCEEeccCCcccccCCCCC---CCcceEcccCC
Q 041851           83 LPENIGQLSSLEELDLQENNFERIPES-ITQRSKLGRLSLRYCERLQSLSKLP---CKLHELDAHHC  145 (151)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~---~~l~~l~l~~~  145 (151)
                      +|..+...+++..|++++|.+..+|.. +.+++.|-.|+++.| .+..+|+..   ..|++|+++++
T Consensus       118 vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~N  183 (1255)
T KOG0444|consen  118 VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNN  183 (1255)
T ss_pred             cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCC
Confidence            777777777777777777777777764 346667777777776 466666543   44566666654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.30  E-value=9.2e-13  Score=97.82  Aligned_cols=122  Identities=29%  Similarity=0.305  Sum_probs=73.5

Q ss_pred             cCCCCC-hhccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851            3 HLQRLP-DELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI   80 (151)
Q Consensus         3 ~l~~lp-~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l   80 (151)
                      ++..+| +.|.++++|+.|++..|+|..+ .-.|.++++++.+.+.+|.    +..-..  ..|..+.+++.+++..|++
T Consensus       208 rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~----I~kL~D--G~Fy~l~kme~l~L~~N~l  281 (873)
T KOG4194|consen  208 RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND----ISKLDD--GAFYGLEKMEHLNLETNRL  281 (873)
T ss_pred             cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcC----cccccC--cceeeecccceeecccchh
Confidence            444555 3333355566666655555533 2345555555555555553    211111  4566777788888888887


Q ss_pred             CccC-cccCCCCCCCEEeCCCCCCcc-CCcchhccCccCEEeccCCcccccCC
Q 041851           81 TRLP-ENIGQLSSLEELDLQENNFER-IPESITQRSKLGRLSLRYCERLQSLS  131 (151)
Q Consensus        81 ~~~~-~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~  131 (151)
                      +.+. .++..++.|++|++++|.+.. -+..+...++|++|+++.|. +..++
T Consensus       282 ~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-i~~l~  333 (873)
T KOG4194|consen  282 QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-ITRLD  333 (873)
T ss_pred             hhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc-cccCC
Confidence            7743 356677888888888887773 34456666778888887763 55555

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.28  E-value=2.4e-13  Score=102.01  Aligned_cols=140  Identities=29%  Similarity=0.362  Sum_probs=82.7

Q ss_pred             ccCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            2 FHLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         2 ~~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      +++..+|+.+..+++|+.|++++|.++++.-....+.++++|++++|+     ....|  +.+..++.|+.|.+.+|.+.
T Consensus       232 N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-----Lt~LP--~avcKL~kL~kLy~n~NkL~  304 (1255)
T KOG0444|consen  232 NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-----LTVLP--DAVCKLTKLTKLYANNNKLT  304 (1255)
T ss_pred             cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-----hccch--HHHhhhHHHHHHHhccCccc
Confidence            344444444444445555555554444433333344444444444443     12345  56666677777777777665


Q ss_pred             --ccCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC---CCCCcceEcccCCcccc
Q 041851           82 --RLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK---LPCKLHELDAHHCTALE  149 (151)
Q Consensus        82 --~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~---~~~~l~~l~l~~~~~l~  149 (151)
                        ++|..++.+.+|+.+...+|.+.-.|..++++..|+.|.++.|. +--+|.   ..+.+..|++..++.|.
T Consensus       305 FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  305 FEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             ccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCcc
Confidence              37777777777777777777777777777777777777777663 444453   34667777777666553

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.27  E-value=1.3e-13  Score=98.26  Aligned_cols=123  Identities=28%  Similarity=0.437  Sum_probs=69.5

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      ++..+|..++.+.++..+++.+|.++..|+....|+.|++++...|-     .+..|  +.++.+.+|+.+++..|.+..
T Consensus       148 ~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-----L~tlP--~~lg~l~~L~~LyL~~Nki~~  220 (565)
T KOG0472|consen  148 QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-----LETLP--PELGGLESLELLYLRRNKIRF  220 (565)
T ss_pred             ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-----hhcCC--hhhcchhhhHHHHhhhccccc
Confidence            44556666666666666666666666665544446666666665542     23344  455555555555555555554


Q ss_pred             cC----------------------cccC-CCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCC
Q 041851           83 LP----------------------ENIG-QLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKL  133 (151)
Q Consensus        83 ~~----------------------~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  133 (151)
                      +|                      .+.. ++.++..||+..|.+++.|..+.-+++|..+|+++| .+..+|..
T Consensus       221 lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN-~is~Lp~s  293 (565)
T KOG0472|consen  221 LPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNN-DISSLPYS  293 (565)
T ss_pred             CCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCC-ccccCCcc
Confidence            44                      3222 555666666666666666666666666666666655 34555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.25  E-value=1.1e-12  Score=93.52  Aligned_cols=117  Identities=25%  Similarity=0.324  Sum_probs=86.9

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      .+..+|-.+.++++|+.|++++|.+.++|..+..+..|+.++++.|++.     .+|  ........++.+-.++|.++.
T Consensus       423 ~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-----~lP--~~~y~lq~lEtllas~nqi~~  495 (565)
T KOG0472|consen  423 KISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR-----MLP--ECLYELQTLETLLASNNQIGS  495 (565)
T ss_pred             ccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc-----cch--HHHhhHHHHHHHHhccccccc
Confidence            4556677777788888888888877788777777777888888877521     233  333334456666666677777


Q ss_pred             cCc-ccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcc
Q 041851           83 LPE-NIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCER  126 (151)
Q Consensus        83 ~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~  126 (151)
                      ++. .+..|.+|..|++.+|.+..+|+.+++++++++|.+++|++
T Consensus       496 vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  496 VDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             cChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence            554 58888899999999999989999999999999999999874

>PLN03210 Resistant to P

Probab=99.20  E-value=1.7e-10  Score=94.20  Aligned_cols=127  Identities=26%  Similarity=0.403  Sum_probs=98.0

Q ss_pred             cccccccccccccc-eecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCC-CCccCcccCCCC
Q 041851           14 LEALWSLHAIGTAI-REVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCG-ITRLPENIGQLS   91 (151)
Q Consensus        14 l~~L~~L~l~~~~i-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-l~~~~~~~~~l~   91 (151)
                      +++|+.|++++|.. ..+|.++..+++|+.|++.+|.    .....|  ..+ .+++|+.+++++|. +..+|..   .+
T Consensus       777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~----~L~~LP--~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~  846 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI----NLETLP--TGI-NLESLESLDLSGCSRLRTFPDI---ST  846 (1153)
T ss_pred             cccchheeCCCCCCccccChhhhCCCCCCEEECCCCC----CcCeeC--CCC-CccccCEEECCCCCcccccccc---cc
Confidence            35677888888764 4788888899999999998654    222445  433 67889999999875 3335532   46


Q ss_pred             CCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCC---CCCcceEcccCCccccc
Q 041851           92 SLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKL---PCKLHELDAHHCTALES  150 (151)
Q Consensus        92 ~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l~~l~l~~~~~l~~  150 (151)
                      +++.|++++|.++.+|..+..+++|+.|++++|..+..+|..   +++|+.+++++|..|+.
T Consensus       847 nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~  908 (1153)
T PLN03210        847 NISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE  908 (1153)
T ss_pred             ccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence            889999999999999999999999999999999888888753   36788889999988864

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.19  E-value=1.7e-10  Score=94.15  Aligned_cols=124  Identities=28%  Similarity=0.472  Sum_probs=62.9

Q ss_pred             cccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCC-CCccCcccCCCCC
Q 041851           14 LEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCG-ITRLPENIGQLSS   92 (151)
Q Consensus        14 l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-l~~~~~~~~~l~~   92 (151)
                      +.+|..|++.++.+..++..+..+++|+.++++.+..    ....|   .+..+++|+.|++.+|. +..+|..++.+++
T Consensus       610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~----l~~ip---~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~  682 (1153)
T PLN03210        610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKN----LKEIP---DLSMATNLETLKLSDCSSLVELPSSIQYLNK  682 (1153)
T ss_pred             ccCCcEEECcCccccccccccccCCCCCEEECCCCCC----cCcCC---ccccCCcccEEEecCCCCccccchhhhccCC
Confidence            3455555555555555554445555555555553321    11222   23445556666665554 3335555555666


Q ss_pred             CCEEeCCCC-CCccCCcchhccCccCEEeccCCcccccCCCCCCCcceEcccCC
Q 041851           93 LEELDLQEN-NFERIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHC  145 (151)
Q Consensus        93 L~~L~l~~n-~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~l~~~  145 (151)
                      |+.|++++| .++.+|..+ .+++|+.|++++|..+..+|....+++.|++.++
T Consensus       683 L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n  735 (1153)
T PLN03210        683 LEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDET  735 (1153)
T ss_pred             CCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCC
Confidence            666666554 233455433 4555666666655555555554455555555433

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.17  E-value=1.5e-11  Score=91.48  Aligned_cols=129  Identities=27%  Similarity=0.402  Sum_probs=93.6

Q ss_pred             ccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCc-ccC
Q 041851           11 LGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPE-NIG   88 (151)
Q Consensus        11 ~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~   88 (151)
                      |..+.+|..|.++.|+++.+|. .|..+++|+.|++.+|+... +.   -  -.|.++++|+.+.+.+|++..+.+ .+.
T Consensus       193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri-ve---~--ltFqgL~Sl~nlklqrN~I~kL~DG~Fy  266 (873)
T KOG4194|consen  193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI-VE---G--LTFQGLPSLQNLKLQRNDISKLDDGAFY  266 (873)
T ss_pred             ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee-eh---h--hhhcCchhhhhhhhhhcCcccccCccee
Confidence            4556666777777777776664 55567777777777775211 11   1  357788889999999998887554 567


Q ss_pred             CCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccccCC---CCCCCcceEcccCC
Q 041851           89 QLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLS---KLPCKLHELDAHHC  145 (151)
Q Consensus        89 ~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~---~~~~~l~~l~l~~~  145 (151)
                      .+.++++|+|+.|.++.+.. ++.+++.|++|+++.|.+-+.-+   ++.++|+.|+++.+
T Consensus       267 ~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N  327 (873)
T KOG4194|consen  267 GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN  327 (873)
T ss_pred             eecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence            89999999999999985544 67789999999999986433222   34588999998854

>PLN03150 hypothetical protein; Provisional

Probab=99.13  E-value=2.4e-10  Score=87.90  Aligned_cols=110  Identities=22%  Similarity=0.389  Sum_probs=89.7

Q ss_pred             cccccccccccce-ecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-cCcccCCCCCC
Q 041851           16 ALWSLHAIGTAIR-EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-LPENIGQLSSL   93 (151)
Q Consensus        16 ~L~~L~l~~~~i~-~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~~~~l~~L   93 (151)
                      .++.|+++++.+. .+|..+..+++|+.|+++.|.    +.+..|  ..++.+++|+.|++++|.+++ +|..++.+++|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~----l~g~iP--~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L  492 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNS----IRGNIP--PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL  492 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCc----ccCcCC--hHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence            3778899999887 778888999999999999876    556677  778889999999999999987 88889999999


Q ss_pred             CEEeCCCCCCc-cCCcchhcc-CccCEEeccCCcccccCC
Q 041851           94 EELDLQENNFE-RIPESITQR-SKLGRLSLRYCERLQSLS  131 (151)
Q Consensus        94 ~~L~l~~n~~~-~~~~~~~~~-~~L~~l~l~~n~~~~~~~  131 (151)
                      +.|++++|.++ .+|..+... .++..+++.+|..+-..|
T Consensus       493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            99999999888 888877653 466788888886544333

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.13  E-value=6.8e-12  Score=97.03  Aligned_cols=138  Identities=28%  Similarity=0.371  Sum_probs=109.3

Q ss_pred             cCCCCChhc-cCcccccccccccccce-ecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851            3 HLQRLPDEL-GNLEALWSLHAIGTAIR-EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI   80 (151)
Q Consensus         3 ~l~~lp~~~-~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l   80 (151)
                      .++..|..- ..++.|+.|++.+|.++ .+.+.+..+.+|+.|++++|+.    . .+|. ..+.++..|+.|++++|.+
T Consensus       346 ~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL----~-~fpa-s~~~kle~LeeL~LSGNkL  419 (1081)
T KOG0618|consen  346 KLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL----N-SFPA-SKLRKLEELEELNLSGNKL  419 (1081)
T ss_pred             cccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc----c-cCCH-HHHhchHHhHHHhcccchh
Confidence            444555221 25667899999999998 6777799999999999999872    2 2331 3566788999999999999


Q ss_pred             CccCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCccccc--CC-CCC-CCcceEcccCCccc
Q 041851           81 TRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQS--LS-KLP-CKLHELDAHHCTAL  148 (151)
Q Consensus        81 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~--~~-~~~-~~l~~l~l~~~~~l  148 (151)
                      +.+|..+..++.|++|...+|.+..+| .+..++.|+.+|++.|. +..  +| ..+ ++|++|+++++..+
T Consensus       420 ~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~-L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  420 TTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNN-LSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             hhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccch-hhhhhhhhhCCCcccceeeccCCccc
Confidence            999999999999999999999999999 78889999999999885 322  22 233 89999999988754

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.07  E-value=6.9e-11  Score=76.82  Aligned_cols=106  Identities=24%  Similarity=0.252  Sum_probs=53.2

Q ss_pred             hcc-CcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCC-CCCCcccEEEcccCCCCccC--c
Q 041851           10 ELG-NLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSL-DGLHTLTYLNLTDCGITRLP--E   85 (151)
Q Consensus        10 ~~~-~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~-~~~~~L~~l~l~~~~l~~~~--~   85 (151)
                      .++ .+.+++.|++++|.++.+. .+..++.|+.|++++|+...    . .  +.+ ..+++|+.|++++|.+.++.  .
T Consensus        36 ~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~----i-~--~~l~~~lp~L~~L~L~~N~I~~l~~l~  107 (175)
T PF14580_consen   36 NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISS----I-S--EGLDKNLPNLQELYLSNNKISDLNELE  107 (175)
T ss_dssp             S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S------C--HHHHHH-TT--EEE-TTS---SCCCCG
T ss_pred             chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCc----c-c--cchHHhCCcCCEEECcCCcCCChHHhH
Confidence            344 5788999999999999875 47779999999999997322    1 1  122 25789999999999998743  4


Q ss_pred             ccCCCCCCCEEeCCCCCCccCCc----chhccCccCEEeccC
Q 041851           86 NIGQLSSLEELDLQENNFERIPE----SITQRSKLGRLSLRY  123 (151)
Q Consensus        86 ~~~~l~~L~~L~l~~n~~~~~~~----~~~~~~~L~~l~l~~  123 (151)
                      .+..+++|+.|++.+|.+...+.    .+..+|+|+.||-..
T Consensus       108 ~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen  108 PLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             GGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             HHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            67789999999999999885444    467889999998653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.05  E-value=1.1e-11  Score=95.83  Aligned_cols=136  Identities=23%  Similarity=0.354  Sum_probs=92.1

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhc--------------------------CCCCCeeeccccccCCcccc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFR--------------------------LNNIDLLSFQRSRGHKQMSL   56 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~--------------------------l~~L~~l~l~~n~~~~~~~~   56 (151)
                      .++++|...++++.|++|++..|.+...|+.+..                          ++.|+.|.+++|.    ..+
T Consensus       298 el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~----Ltd  373 (1081)
T KOG0618|consen  298 ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH----LTD  373 (1081)
T ss_pred             hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc----ccc
Confidence            4566777777777777777777776655542111                          1112233333332    112


Q ss_pred             ccccccCCCCCCcccEEEcccCCCCccCc-ccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCC--
Q 041851           57 SLPITLSLDGLHTLTYLNLTDCGITRLPE-NIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKL--  133 (151)
Q Consensus        57 ~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~--  133 (151)
                      ..-  +.+.++..|+.|++++|++..+|. .+..+..|++|++++|.++.+|..+..++.|++|..-+| .+..+|..  
T Consensus       374 ~c~--p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~fPe~~~  450 (1081)
T KOG0618|consen  374 SCF--PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLSFPELAQ  450 (1081)
T ss_pred             cch--hhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC-ceeechhhhh
Confidence            222  345577788888898888888775 566788888888999988888888888888888888776 46777743  


Q ss_pred             CCCcceEcccCC
Q 041851          134 PCKLHELDAHHC  145 (151)
Q Consensus       134 ~~~l~~l~l~~~  145 (151)
                      .++++.+|++.+
T Consensus       451 l~qL~~lDlS~N  462 (1081)
T KOG0618|consen  451 LPQLKVLDLSCN  462 (1081)
T ss_pred             cCcceEEecccc
Confidence            378888998843

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.97  E-value=1.4e-09  Score=84.86  Aligned_cols=37  Identities=32%  Similarity=0.518  Sum_probs=19.4

Q ss_pred             cccEEEcccCCCCccCcccCCCCCCCEEeCCCCCCccCC
Q 041851           69 TLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIP  107 (151)
Q Consensus        69 ~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~  107 (151)
                      +|+.|+++.|.++.+|..+.  ++|+.|++++|.++.+|
T Consensus       263 ~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP  299 (754)
T PRK15370        263 ALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLP  299 (754)
T ss_pred             CCCEEECcCCccCccccccC--CCCcEEECCCCccccCc
Confidence            45555555555555544332  35556666555555444

>PLN03150 hypothetical protein; Provisional

Probab=98.97  E-value=1.7e-09  Score=83.31  Aligned_cols=101  Identities=27%  Similarity=0.355  Sum_probs=81.6

Q ss_pred             CCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-cCcccCCCCCCCEEeCCCCCCc-cCCcchhccCccC
Q 041851           40 IDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-LPENIGQLSSLEELDLQENNFE-RIPESITQRSKLG  117 (151)
Q Consensus        40 L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~  117 (151)
                      ++.+++..|.    +.+..|  ..++.+++|+.|++++|.+.+ +|..++.+++|+.|++++|.++ .+|..++.+++|+
T Consensus       420 v~~L~L~~n~----L~g~ip--~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~  493 (623)
T PLN03150        420 IDGLGLDNQG----LRGFIP--NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR  493 (623)
T ss_pred             EEEEECCCCC----ccccCC--HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence            5566777654    455666  778889999999999999986 8888999999999999999998 8898999999999


Q ss_pred             EEeccCCcccccCCCCC----CCcceEcccCCc
Q 041851          118 RLSLRYCERLQSLSKLP----CKLHELDAHHCT  146 (151)
Q Consensus       118 ~l~l~~n~~~~~~~~~~----~~l~~l~l~~~~  146 (151)
                      .|++++|.....+|..+    .++..+++.++.
T Consensus       494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             EEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            99999998777887543    334566666544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.96  E-value=1e-10  Score=82.87  Aligned_cols=41  Identities=15%  Similarity=0.063  Sum_probs=21.3

Q ss_pred             hhccCcccccccccccccce-ecChhhhcCCC---CCeeeccccc
Q 041851            9 DELGNLEALWSLHAIGTAIR-EVPSSFFRLNN---IDLLSFQRSR   49 (151)
Q Consensus         9 ~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~---L~~l~l~~n~   49 (151)
                      ..+..+++|+.|+++++.+. ..+..+..+..   |+.+++..|.
T Consensus        75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~  119 (319)
T cd00116          75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG  119 (319)
T ss_pred             HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc
Confidence            34445556666666666654 22333333333   6666666543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.95  E-value=1.5e-09  Score=84.75  Aligned_cols=127  Identities=24%  Similarity=0.404  Sum_probs=58.6

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      ++..+|..+.  .+|+.|++++|.+..+|..+.  .+|+.|+++.|..    . .+|  +.+.  .+|+.|++++|.++.
T Consensus       231 ~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L----~-~LP--~~l~--~sL~~L~Ls~N~Lt~  297 (754)
T PRK15370        231 QLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKI----S-CLP--ENLP--EELRYLSVYDNSIRT  297 (754)
T ss_pred             ccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCcc----C-ccc--cccC--CCCcEEECCCCcccc
Confidence            3445554432  356666666666665555432  3456666655431    1 122  1111  234444444444443


Q ss_pred             cCcccC-------------------CCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC-CCCCcceEcc
Q 041851           83 LPENIG-------------------QLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK-LPCKLHELDA  142 (151)
Q Consensus        83 ~~~~~~-------------------~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~-~~~~l~~l~l  142 (151)
                      +|..+.                   ..++|+.|++++|.++.+|..+.  ++|+.|++++|. +..+|. .+++|+.|++
T Consensus       298 LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~-L~~LP~~lp~~L~~LdL  374 (754)
T PRK15370        298 LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQ-ITVLPETLPPTITTLDV  374 (754)
T ss_pred             CcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhhc--CcccEEECCCCC-CCcCChhhcCCcCEEEC
Confidence            322111                   11345555555555554444332  455666666553 344443 2345566666


Q ss_pred             cCC
Q 041851          143 HHC  145 (151)
Q Consensus       143 ~~~  145 (151)
                      ++|
T Consensus       375 s~N  377 (754)
T PRK15370        375 SRN  377 (754)
T ss_pred             CCC
Confidence            555

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.91  E-value=4.8e-09  Score=81.96  Aligned_cols=128  Identities=26%  Similarity=0.306  Sum_probs=63.9

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCC----------C----CCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSL----------D----GLH   68 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~----------~----~~~   68 (151)
                      ++..+|+.+.  ++|+.|++.+|.++.+|..   .++|+.|++++|.... ++. .+  ..+          .    ...
T Consensus       212 ~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lts-LP~-lp--~sL~~L~Ls~N~L~~Lp~lp~  282 (788)
T PRK15387        212 GLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTS-LPV-LP--PGLLELSIFSNPLTHLPALPS  282 (788)
T ss_pred             CCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCc-ccC-cc--cccceeeccCCchhhhhhchh
Confidence            4556776553  3677777777777766542   4567777777664322 110 00  000          0    012


Q ss_pred             cccEEEcccCCCCccCcccCCCCCCCEEeCCCCCCccCCcchhc----------------c-CccCEEeccCCcccccCC
Q 041851           69 TLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQ----------------R-SKLGRLSLRYCERLQSLS  131 (151)
Q Consensus        69 ~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~----------------~-~~L~~l~l~~n~~~~~~~  131 (151)
                      +|..|++++|.++.+|.   .+++|+.|++++|.++.+|.....                + .+|+.|++++|. +..+|
T Consensus       283 ~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~-Ls~LP  358 (788)
T PRK15387        283 GLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQ-LASLP  358 (788)
T ss_pred             hcCEEECcCCccccccc---cccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCc-cCCCC
Confidence            34455555555555443   235666666666666654431110                0 245666666553 44455


Q ss_pred             CCCCCcceEccc
Q 041851          132 KLPCKLHELDAH  143 (151)
Q Consensus       132 ~~~~~l~~l~l~  143 (151)
                      ..+.++..|+++
T Consensus       359 ~lp~~L~~L~Ls  370 (788)
T PRK15387        359 TLPSELYKLWAY  370 (788)
T ss_pred             CCCcccceehhh
Confidence            444444444444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.90  E-value=1.3e-10  Score=86.28  Aligned_cols=113  Identities=28%  Similarity=0.474  Sum_probs=60.1

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      .+-.+|..+.++..+++++++.|.+.-+|..+..++ |+.+-+++|+..     .+|  +.++...++..++.+.|.+..
T Consensus       109 ~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~-----~lp--~~ig~~~tl~~ld~s~nei~s  180 (722)
T KOG0532|consen  109 CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLT-----SLP--EEIGLLPTLAHLDVSKNEIQS  180 (722)
T ss_pred             cceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccc-----cCC--cccccchhHHHhhhhhhhhhh
Confidence            345567777777777777777777777766666665 666666666521     223  334444455555555555544


Q ss_pred             cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCC
Q 041851           83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYC  124 (151)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n  124 (151)
                      +|..++.+..|+.|.+..|.+..+|..+.. -.|..||++.|
T Consensus       181 lpsql~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfScN  221 (722)
T KOG0532|consen  181 LPSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSCN  221 (722)
T ss_pred             chHHhhhHHHHHHHHHhhhhhhhCCHHHhC-CceeeeecccC
Confidence            444444444444444444444444443332 12444444443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.90  E-value=7.2e-09  Score=81.00  Aligned_cols=76  Identities=21%  Similarity=0.219  Sum_probs=51.4

Q ss_pred             cccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCCCCCCE
Q 041851           16 ALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEE   95 (151)
Q Consensus        16 ~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L~~   95 (151)
                      +-..|+++++.++.+|+.+.  .+++.|.+..|...     .+|  .   ..++|+.|++++|.++.+|..   .++|+.
T Consensus       202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt-----~LP--~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~  266 (788)
T PRK15387        202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-----SLP--A---LPPELRTLEVSGNQLTSLPVL---PPGLLE  266 (788)
T ss_pred             CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCC-----CCC--C---CCCCCcEEEecCCccCcccCc---ccccce
Confidence            45678999999999988664  47999999988622     233  2   246788999999988876642   234555


Q ss_pred             EeCCCCCCccC
Q 041851           96 LDLQENNFERI  106 (151)
Q Consensus        96 L~l~~n~~~~~  106 (151)
                      |++++|.++.+
T Consensus       267 L~Ls~N~L~~L  277 (788)
T PRK15387        267 LSIFSNPLTHL  277 (788)
T ss_pred             eeccCCchhhh
Confidence            55555544433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.87  E-value=1.1e-10  Score=86.56  Aligned_cols=135  Identities=28%  Similarity=0.404  Sum_probs=112.1

Q ss_pred             ccCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            2 FHLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         2 ~~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      +++.++|..+..+..|..+.++.|.+-.+|..+..+..|+.++++.|+.    + ..|  ..+..++ |+.+.+++|+++
T Consensus        85 NR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql----S-~lp--~~lC~lp-Lkvli~sNNkl~  156 (722)
T KOG0532|consen   85 NRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL----S-HLP--DGLCDLP-LKVLIVSNNKLT  156 (722)
T ss_pred             cccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh----h-cCC--hhhhcCc-ceeEEEecCccc
Confidence            4667889888889999999999999999999999999999999998862    2 344  4555666 999999999999


Q ss_pred             ccCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCCC--CCcceEcccCC
Q 041851           82 RLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKLP--CKLHELDAHHC  145 (151)
Q Consensus        82 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~--~~l~~l~l~~~  145 (151)
                      .+|+.++....|..|+.+.|.+..+|..++++.+|+.+.+..|. +..+|...  -.|..||++++
T Consensus       157 ~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~LpLi~lDfScN  221 (722)
T KOG0532|consen  157 SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSLPLIRLDFSCN  221 (722)
T ss_pred             cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCCceeeeecccC
Confidence            99999999999999999999999999999999999999999984 56666432  33567777644

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.80  E-value=5.6e-09  Score=56.36  Aligned_cols=40  Identities=35%  Similarity=0.596  Sum_probs=18.9

Q ss_pred             CCCCCCcccEEEcccCCCCccC-cccCCCCCCCEEeCCCCC
Q 041851           63 SLDGLHTLTYLNLTDCGITRLP-ENIGQLSSLEELDLQENN  102 (151)
Q Consensus        63 ~~~~~~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~  102 (151)
                      .|..+++|+.+++++|.++.++ ..+..+++|+++++++|.
T Consensus        20 ~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen   20 SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            3444444555555544444432 244455555555555543

...

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.79  E-value=1.9e-09  Score=76.46  Aligned_cols=106  Identities=25%  Similarity=0.308  Sum_probs=44.5

Q ss_pred             cccccccccccee-----cChhhhcC-CCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-----cCc
Q 041851           17 LWSLHAIGTAIRE-----VPSSFFRL-NNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-----LPE   85 (151)
Q Consensus        17 L~~L~l~~~~i~~-----~~~~~~~l-~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-----~~~   85 (151)
                      |++|++++|.++.     +...+..+ ++|+.+++..|..........+  ..+..+.+++.+++++|.+++     ++.
T Consensus       110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  187 (319)
T cd00116         110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA--KALRANRDLKELNLANNGIGDAGIRALAE  187 (319)
T ss_pred             ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH--HHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence            5666666555541     11223334 5555666554432110000111  223334445555555555542     122


Q ss_pred             ccCCCCCCCEEeCCCCCCcc-----CCcchhccCccCEEeccCC
Q 041851           86 NIGQLSSLEELDLQENNFER-----IPESITQRSKLGRLSLRYC  124 (151)
Q Consensus        86 ~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n  124 (151)
                      .+...++|+.|++++|.++.     +...+..+++|+.|++++|
T Consensus       188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n  231 (319)
T cd00116         188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN  231 (319)
T ss_pred             HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence            23333455555555554431     1122333444555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.77  E-value=5.5e-09  Score=76.41  Aligned_cols=47  Identities=23%  Similarity=0.364  Sum_probs=25.1

Q ss_pred             cCCCCChhccCcc-cccccccccccceecChhhhcCCCCCeeeccccc
Q 041851            3 HLQRLPDELGNLE-ALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSR   49 (151)
Q Consensus         3 ~l~~lp~~~~~l~-~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~   49 (151)
                      ++.++|......+ +|+.|++++|.+..+|..+..++.|+.|++..|.
T Consensus       127 ~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886         127 NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence            3444555544443 5555555555555554445555555555555554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.76  E-value=1.4e-08  Score=54.80  Aligned_cols=58  Identities=31%  Similarity=0.509  Sum_probs=50.0

Q ss_pred             CcccEEEcccCCCCccCc-ccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCc
Q 041851           68 HTLTYLNLTDCGITRLPE-NIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCE  125 (151)
Q Consensus        68 ~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~  125 (151)
                      ++|+.+++++|.++.+++ .+..+++|++|++++|.++.++. .+.++++|+.+++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            468899999999999764 67789999999999999996654 77899999999999985

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.70  E-value=1.3e-08  Score=74.53  Aligned_cols=135  Identities=30%  Similarity=0.437  Sum_probs=93.2

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      ++..+|..++.+++|+.|++++|.++.+|......+.|+.+++++|....     .|  ........|+.+.+++|.+..
T Consensus       151 ~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~-----l~--~~~~~~~~L~~l~~~~N~~~~  223 (394)
T COG4886         151 KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISD-----LP--PEIELLSALEELDLSNNSIIE  223 (394)
T ss_pred             chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCcccc-----Cc--hhhhhhhhhhhhhhcCCccee
Confidence            56677778889999999999999999998866688899999999886322     22  222233457777777776555


Q ss_pred             cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCC--CCCcceEcccCC
Q 041851           83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKL--PCKLHELDAHHC  145 (151)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~--~~~l~~l~l~~~  145 (151)
                      .+..+..+.++..+.+.+|.+..++..++.+++++.+++++|. +.+++..  ..+++.|++++.
T Consensus       224 ~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~-i~~i~~~~~~~~l~~L~~s~n  287 (394)
T COG4886         224 LLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ-ISSISSLGSLTNLRELDLSGN  287 (394)
T ss_pred             cchhhhhcccccccccCCceeeeccchhccccccceecccccc-ccccccccccCccCEEeccCc
Confidence            5556666777777777777666556666677777777777763 4555442  255666666543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.69  E-value=3e-09  Score=74.04  Aligned_cols=105  Identities=19%  Similarity=0.209  Sum_probs=64.8

Q ss_pred             cCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCCC
Q 041851           12 GNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLS   91 (151)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l~   91 (151)
                      ..+..|+++|+++|.|+.+-.+..-.+.++.++++.|+...    .    .++..+++|+.|++++|.++.+..+--.+.
T Consensus       281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~----v----~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLG  352 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT----V----QNLAELPQLQLLDLSGNLLAECVGWHLKLG  352 (490)
T ss_pred             chHhhhhhccccccchhhhhhhhhhccceeEEeccccceee----e----hhhhhcccceEeecccchhHhhhhhHhhhc
Confidence            34567777777777777666666667777777777665211    1    335566677777777777665443334455


Q ss_pred             CCCEEeCCCCCCccCCcchhccCccCEEeccCCc
Q 041851           92 SLEELDLQENNFERIPESITQRSKLGRLSLRYCE  125 (151)
Q Consensus        92 ~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~  125 (151)
                      ++.+|.++.|.+..+. .+..+-+|..||+++|.
T Consensus       353 NIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~  385 (490)
T KOG1259|consen  353 NIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQ  385 (490)
T ss_pred             CEeeeehhhhhHhhhh-hhHhhhhheeccccccc
Confidence            6666666666655432 34455566666666663

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.59  E-value=1.9e-09  Score=77.06  Aligned_cols=119  Identities=28%  Similarity=0.392  Sum_probs=79.5

Q ss_pred             CCCCChhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEccc-CCCC
Q 041851            4 LQRLPDELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTD-CGIT   81 (151)
Q Consensus         4 l~~lp~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~-~~l~   81 (151)
                      +.++|..+  .+....+++..|.|+.+|+ +|..+++|+.+++++|.    ++...|  ++|..+.++..+-+.+ |+|+
T Consensus        58 L~eVP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~----Is~I~p--~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   58 LTEVPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN----ISFIAP--DAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             cccCcccC--CCcceEEEeccCCcccCChhhccchhhhceecccccc----hhhcCh--HhhhhhHhhhHHHhhcCCchh
Confidence            45566443  2456678888888887765 67778888888888776    565666  7777777776665555 7787


Q ss_pred             ccCc-ccCCCCCCCEEeCCCCCCc-cCCcchhccCccCEEeccCCcccccCC
Q 041851           82 RLPE-NIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSLRYCERLQSLS  131 (151)
Q Consensus        82 ~~~~-~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~  131 (151)
                      ++|+ .++.+..++-|.+.-|.+. .....+.+++++.-|.+..|. +..++
T Consensus       130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~  180 (498)
T KOG4237|consen  130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSIC  180 (498)
T ss_pred             hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhc
Confidence            7664 5566777777777766666 334466667777666666653 34444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.59  E-value=4.6e-09  Score=73.12  Aligned_cols=114  Identities=23%  Similarity=0.215  Sum_probs=89.3

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      .|..+.+++.-.+.++.|++++|++..+.. +..+.+|+.+++++|.... +.      ..=..+.+++.|.++.|.+.+
T Consensus       295 ~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~-~~------Gwh~KLGNIKtL~La~N~iE~  366 (490)
T KOG1259|consen  295 LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAE-CV------GWHLKLGNIKTLKLAQNKIET  366 (490)
T ss_pred             chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHh-hh------hhHhhhcCEeeeehhhhhHhh
Confidence            466677888888999999999999987754 7889999999999886322 11      111245678889999998887


Q ss_pred             cCcccCCCCCCCEEeCCCCCCccCCc--chhccCccCEEeccCCc
Q 041851           83 LPENIGQLSSLEELDLQENNFERIPE--SITQRSKLGRLSLRYCE  125 (151)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~  125 (151)
                      +. +++.+-+|..|++++|.+..+..  .++.+|.|+++.+.+|+
T Consensus       367 LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  367 LS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            54 66778888999999998885433  67888999999999987

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.55  E-value=1.7e-09  Score=77.36  Aligned_cols=118  Identities=20%  Similarity=0.249  Sum_probs=95.8

Q ss_pred             ccCCCCC-hhccCcccccccccccccceec-ChhhhcCCCCCeeeccc-cccCCccccccccccCCCCCCcccEEEcccC
Q 041851            2 FHLQRLP-DELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQR-SRGHKQMSLSLPITLSLDGLHTLTYLNLTDC   78 (151)
Q Consensus         2 ~~l~~lp-~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~-n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~   78 (151)
                      ++|..|| ..|..+++|+.|+++.|.|+.+ |..|..++++..+-+.. |+    +.+...  ..|+.+.+++-|.+.-|
T Consensus        77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk----I~~l~k--~~F~gL~slqrLllNan  150 (498)
T KOG4237|consen   77 NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK----ITDLPK--GAFGGLSSLQRLLLNAN  150 (498)
T ss_pred             CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc----hhhhhh--hHhhhHHHHHHHhcChh
Confidence            3677888 6788999999999999999966 77899999987776654 65    444444  67888999999988888


Q ss_pred             CCCc-cCcccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCc
Q 041851           79 GITR-LPENIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCE  125 (151)
Q Consensus        79 ~l~~-~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~  125 (151)
                      .+.- ..+.++.++++..|.+..|.+..++. .+..+..++.+.+..|+
T Consensus       151 ~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  151 HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            8887 44578899999999999998887766 67777888888888887

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.50  E-value=1.6e-07  Score=47.11  Aligned_cols=38  Identities=37%  Similarity=0.587  Sum_probs=19.9

Q ss_pred             cccEEEcccCCCCccCcccCCCCCCCEEeCCCCCCccC
Q 041851           69 TLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERI  106 (151)
Q Consensus        69 ~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~  106 (151)
                      +|+.|++++|++++++..++.+++|+.|++++|.++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            45555555555555554455555555555555555533

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=5.9e-08  Score=70.29  Aligned_cols=111  Identities=21%  Similarity=0.142  Sum_probs=61.7

Q ss_pred             hccCccccccccccccccee---cChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc--cC
Q 041851           10 ELGNLEALWSLHAIGTAIRE---VPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR--LP   84 (151)
Q Consensus        10 ~~~~l~~L~~L~l~~~~i~~---~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~--~~   84 (151)
                      ....|++++.|+++.|-+..   +-.-..++++|+.|+++.|+.........     -..++.++.|.++.|+++.  +.
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-----~~~l~~lK~L~l~~CGls~k~V~  215 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-----TLLLSHLKQLVLNSCGLSWKDVQ  215 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-----hhhhhhhheEEeccCCCCHHHHH
Confidence            55678888888888887662   22345678888888888886433222111     1134566667777776664  33


Q ss_pred             cccCCCCCCCEEeCCCCC-CccCCcchhccCccCEEeccCCc
Q 041851           85 ENIGQLSSLEELDLQENN-FERIPESITQRSKLGRLSLRYCE  125 (151)
Q Consensus        85 ~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~L~~l~l~~n~  125 (151)
                      ..+..+|++..|++.+|. +.........+..|+.|++++|+
T Consensus       216 ~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~  257 (505)
T KOG3207|consen  216 WILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN  257 (505)
T ss_pred             HHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence            334455566666665552 11111112233345555555554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.38  E-value=6.7e-09  Score=79.53  Aligned_cols=116  Identities=27%  Similarity=0.201  Sum_probs=72.5

Q ss_pred             CccCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851            1 IFHLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI   80 (151)
Q Consensus         1 ~~~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l   80 (151)
                      |+++..+...+.-++.+++|++++|.++++- .+..+++|++||++.|.... ++.-.+     ..+ .|..|++.+|.+
T Consensus       173 yN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~-vp~l~~-----~gc-~L~~L~lrnN~l  244 (1096)
T KOG1859|consen  173 YNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRH-VPQLSM-----VGC-KLQLLNLRNNAL  244 (1096)
T ss_pred             hhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhcc-ccccch-----hhh-hheeeeecccHH
Confidence            4455566666667777777777777777553 56667777777777764221 111111     112 277777777777


Q ss_pred             CccCcccCCCCCCCEEeCCCCCCccCC--cchhccCccCEEeccCCc
Q 041851           81 TRLPENIGQLSSLEELDLQENNFERIP--ESITQRSKLGRLSLRYCE  125 (151)
Q Consensus        81 ~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~  125 (151)
                      +++. .+..+.+|+.||+++|-+....  ..++.+..|+.|.+.+|+
T Consensus       245 ~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  245 TTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             Hhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            7643 4556777777777777665322  245566677777777776

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.34  E-value=3.7e-07  Score=71.09  Aligned_cols=124  Identities=17%  Similarity=0.176  Sum_probs=87.3

Q ss_pred             ccccccccccccc-eecC-hh-hhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCCC
Q 041851           15 EALWSLHAIGTAI-REVP-SS-FFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLS   91 (151)
Q Consensus        15 ~~L~~L~l~~~~i-~~~~-~~-~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l~   91 (151)
                      .+|++|++++... ...+ .. ...+|+|++|.+.+-.   ...+++-  ....++++|.+||+++++++.+ .++..++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~---~~~~dF~--~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lk  195 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ---FDNDDFS--QLCASFPNLRSLDISGTNISNL-SGISRLK  195 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCce---ecchhHH--HHhhccCccceeecCCCCccCc-HHHhccc
Confidence            4789999988653 2222 22 3348999999998432   1222223  3455789999999999999987 4788999


Q ss_pred             CCCEEeCCCCCCccCCc--chhccCccCEEeccCCccccc---------CCCCCCCcceEcccC
Q 041851           92 SLEELDLQENNFERIPE--SITQRSKLGRLSLRYCERLQS---------LSKLPCKLHELDAHH  144 (151)
Q Consensus        92 ~L~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~~---------~~~~~~~l~~l~l~~  144 (151)
                      +|+.|.+.+-.+.....  .+..+++|++||+|.-.....         -+..+++|+.||.++
T Consensus       196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            99999998877764333  577899999999997543221         123468888888774

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.31  E-value=7e-07  Score=44.76  Aligned_cols=41  Identities=29%  Similarity=0.498  Sum_probs=33.7

Q ss_pred             CCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC
Q 041851           91 SSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK  132 (151)
Q Consensus        91 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  132 (151)
                      ++|++|++++|.++.+|..++.+++|+.|++++|+ +.+++.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence            57899999999999999889999999999999995 555543

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.28  E-value=4.2e-07  Score=72.48  Aligned_cols=126  Identities=23%  Similarity=0.340  Sum_probs=72.0

Q ss_pred             CcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCC-CCccCcccCCCC
Q 041851           13 NLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCG-ITRLPENIGQLS   91 (151)
Q Consensus        13 ~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-l~~~~~~~~~l~   91 (151)
                      .....+.+.+.++.+..++.+ ...+.|++|-+..|.. .  ....+ .+.|..++.|++||+++|. +..+|..++.+-
T Consensus       521 ~~~~~rr~s~~~~~~~~~~~~-~~~~~L~tLll~~n~~-~--l~~is-~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li  595 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIEHIAGS-SENPKLRTLLLQRNSD-W--LLEIS-GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV  595 (889)
T ss_pred             chhheeEEEEeccchhhccCC-CCCCccceEEEeecch-h--hhhcC-HHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence            345556666666665544332 1233566666665531 0  01111 0335567777777777654 334777777777


Q ss_pred             CCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCC---CCCcceEccc
Q 041851           92 SLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKL---PCKLHELDAH  143 (151)
Q Consensus        92 ~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l~~l~l~  143 (151)
                      +|++|+++++.++.+|..+..+..|.+|++..+.....+|.+   +.+|++|.+.
T Consensus       596 ~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~  650 (889)
T KOG4658|consen  596 HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP  650 (889)
T ss_pred             hhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence            777777777777777777777777777777765544444332   3556666554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.28  E-value=5.4e-08  Score=60.43  Aligned_cols=109  Identities=19%  Similarity=0.244  Sum_probs=80.4

Q ss_pred             ccccccccccccceecChh---hhcCCCCCeeeccccccCCccccccccccCCC-CCCcccEEEcccCCCCccCcccCCC
Q 041851           15 EALWSLHAIGTAIREVPSS---FFRLNNIDLLSFQRSRGHKQMSLSLPITLSLD-GLHTLTYLNLTDCGITRLPENIGQL   90 (151)
Q Consensus        15 ~~L~~L~l~~~~i~~~~~~---~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~-~~~~L~~l~l~~~~l~~~~~~~~~l   90 (151)
                      +.+..++++.+.+-.+++.   +.....|+..++++|..     .++|  +.|. .++.++.+++.+|.++++|.++..|
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f-----k~fp--~kft~kf~t~t~lNl~~neisdvPeE~Aam   99 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF-----KKFP--KKFTIKFPTATTLNLANNEISDVPEELAAM   99 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchh-----hhCC--HHHhhccchhhhhhcchhhhhhchHHHhhh
Confidence            4566788888876655543   33344566678887752     2334  3333 4568899999999999999999999


Q ss_pred             CCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCC
Q 041851           91 SSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLS  131 (151)
Q Consensus        91 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  131 (151)
                      +.|+.++++.|.+...|+.+..+.++..|+..+|. ...+|
T Consensus       100 ~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid  139 (177)
T KOG4579|consen  100 PALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA-RAEID  139 (177)
T ss_pred             HHhhhcccccCccccchHHHHHHHhHHHhcCCCCc-cccCc
Confidence            99999999999999888888878888888887764 44444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=7.4e-08  Score=69.80  Aligned_cols=132  Identities=21%  Similarity=0.195  Sum_probs=96.1

Q ss_pred             cCcccccccccccccceecC--hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCcc-C-ccc
Q 041851           12 GNLEALWSLHAIGTAIREVP--SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRL-P-ENI   87 (151)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~--~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~-~-~~~   87 (151)
                      +++++|+.+.+.+.+++..+  .....+++++.|+++.|-...  .....  .....+++|+.|+++.|.+... . ..-
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n--w~~v~--~i~eqLp~Le~LNls~Nrl~~~~~s~~~  193 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN--WFPVL--KIAEQLPSLENLNLSSNRLSNFISSNTT  193 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh--HHHHH--HHHHhcccchhcccccccccCCccccch
Confidence            46788999999999888665  367789999999999886322  11222  4566889999999999998752 2 223


Q ss_pred             CCCCCCCEEeCCCCCCc--cCCcchhccCccCEEeccCCccc--ccCC-CCCCCcceEcccCCcc
Q 041851           88 GQLSSLEELDLQENNFE--RIPESITQRSKLGRLSLRYCERL--QSLS-KLPCKLHELDAHHCTA  147 (151)
Q Consensus        88 ~~l~~L~~L~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~~~--~~~~-~~~~~l~~l~l~~~~~  147 (151)
                      ..++++..|.++.|.++  .+......+|++..|++.+|..+  ...+ +++..|+.|+++++..
T Consensus       194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l  258 (505)
T KOG3207|consen  194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL  258 (505)
T ss_pred             hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence            36789999999999988  34445567899999999999532  2222 3457788888886543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.19  E-value=9.9e-07  Score=70.42  Aligned_cols=115  Identities=25%  Similarity=0.360  Sum_probs=92.4

Q ss_pred             cCCCCChhccCccccccccccccc--ceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTA--IREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCG   79 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~--i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~   79 (151)
                      ++..++... .++++++|-+.+|.  +..++. .|..++.|+.|++++|.    -...+|  +.++.+-+|++|+++++.
T Consensus       534 ~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~----~l~~LP--~~I~~Li~LryL~L~~t~  606 (889)
T KOG4658|consen  534 KIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS----SLSKLP--SSIGELVHLRYLDLSDTG  606 (889)
T ss_pred             chhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC----ccCcCC--hHHhhhhhhhcccccCCC
Confidence            445555554 34579999999886  555554 47779999999999765    445778  888899999999999999


Q ss_pred             CCccCcccCCCCCCCEEeCCCCCCc-cCCcchhccCccCEEeccCC
Q 041851           80 ITRLPENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSLRYC  124 (151)
Q Consensus        80 l~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n  124 (151)
                      ++.+|..++.+..|.+|++..+... .++.....+.+|++|.+..-
T Consensus       607 I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  607 ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            9999999999999999999988655 55666677899999998764

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.15  E-value=2.8e-06  Score=56.06  Aligned_cols=64  Identities=27%  Similarity=0.320  Sum_probs=38.5

Q ss_pred             cCCCCCCcccEEEcccCCCCccCcccCC-CCCCCEEeCCCCCCccCCc--chhccCccCEEeccCCc
Q 041851           62 LSLDGLHTLTYLNLTDCGITRLPENIGQ-LSSLEELDLQENNFERIPE--SITQRSKLGRLSLRYCE  125 (151)
Q Consensus        62 ~~~~~~~~L~~l~l~~~~l~~~~~~~~~-l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~  125 (151)
                      +.+..++.|.+|.+++|+|.++.+.+.. ++++..|.+.+|.+..+-.  .+..++.|+.|.+-+|+
T Consensus        58 ~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   58 DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP  124 (233)
T ss_pred             ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence            3455666677777777777665444443 3566777777766653322  34556666776666665

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.13  E-value=1.1e-05  Score=59.13  Aligned_cols=116  Identities=26%  Similarity=0.433  Sum_probs=62.7

Q ss_pred             ccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccC-CCCccCcccCC
Q 041851           11 LGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDC-GITRLPENIGQ   89 (151)
Q Consensus        11 ~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-~l~~~~~~~~~   89 (151)
                      +..+.+++.|++++|.++.+|. +  -.+|+.|.+..+.   . ....|  +.+  ..+|+.|.+++| .+..+|.    
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~---n-LtsLP--~~L--P~nLe~L~Ls~Cs~L~sLP~----  112 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCN---N-LTTLP--GSI--PEGLEKLTVCHCPEISGLPE----  112 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCC---C-cccCC--chh--hhhhhheEccCccccccccc----
Confidence            3456788889999888887762 1  2358888887432   1 12223  222  136777777776 4544443    


Q ss_pred             CCCCCEEeCCCCC---CccCCcchhcc------------------CccCEEeccCCcccccCC-CCCCCcceEcccC
Q 041851           90 LSSLEELDLQENN---FERIPESITQR------------------SKLGRLSLRYCERLQSLS-KLPCKLHELDAHH  144 (151)
Q Consensus        90 l~~L~~L~l~~n~---~~~~~~~~~~~------------------~~L~~l~l~~n~~~~~~~-~~~~~l~~l~l~~  144 (151)
                        .|+.|++.++.   +..+|..+..+                  ++|++|++++|.... +| ..+.+|+.|.+..
T Consensus       113 --sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~LP~SLk~L~ls~  186 (426)
T PRK15386        113 --SVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKLPESLQSITLHI  186 (426)
T ss_pred             --ccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-CcccccccCcEEEecc
Confidence              23444444432   22344322221                  257777777765432 33 2456666666654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.10  E-value=1.5e-07  Score=72.46  Aligned_cols=123  Identities=20%  Similarity=0.127  Sum_probs=90.1

Q ss_pred             cccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCCCCC
Q 041851           14 LEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSL   93 (151)
Q Consensus        14 l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L   93 (151)
                      +-.|...+.++|++..+-.++.-++.+++|++++|+...    .    +++..++.|+.||+++|.++-+|..-..-.+|
T Consensus       163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~----v----~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L  234 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK----V----DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKL  234 (1096)
T ss_pred             hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh----h----HHHHhcccccccccccchhccccccchhhhhh
Confidence            456778888888888777778888999999999887322    1    45667889999999999999877644444569


Q ss_pred             CEEeCCCCCCccCCcchhccCccCEEeccCCccc--ccCCCC--CCCcceEcccCC
Q 041851           94 EELDLQENNFERIPESITQRSKLGRLSLRYCERL--QSLSKL--PCKLHELDAHHC  145 (151)
Q Consensus        94 ~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~--~~~~~~--~~~l~~l~l~~~  145 (151)
                      +.|.+++|.++.+.. +.++.+|..||++.|-..  .++...  ...|..|.+.++
T Consensus       235 ~~L~lrnN~l~tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN  289 (1096)
T KOG1859|consen  235 QLLNLRNNALTTLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN  289 (1096)
T ss_pred             eeeeecccHHHhhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence            999999999887754 778899999999987422  222221  245555555554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.09  E-value=1e-05  Score=53.52  Aligned_cols=101  Identities=20%  Similarity=0.195  Sum_probs=71.5

Q ss_pred             cccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccC--cccCCCCCC
Q 041851           16 ALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLP--ENIGQLSSL   93 (151)
Q Consensus        16 ~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~--~~~~~l~~L   93 (151)
                      +...+|+.+|.+..++ .+..++.|.+|.+.+|+.+.    ..|  ..-..++++..|.+.+|++.++.  +.+..+++|
T Consensus        43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~----I~p--~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L  115 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITR----IDP--DLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL  115 (233)
T ss_pred             ccceecccccchhhcc-cCCCccccceEEecCCccee----ecc--chhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence            5566788888776443 25567888899999887433    333  22234567888999999988743  367788899


Q ss_pred             CEEeCCCCCCccCCc----chhccCccCEEeccC
Q 041851           94 EELDLQENNFERIPE----SITQRSKLGRLSLRY  123 (151)
Q Consensus        94 ~~L~l~~n~~~~~~~----~~~~~~~L~~l~l~~  123 (151)
                      ++|.+-+|.++....    .+..++++++||+++
T Consensus       116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            999998888774333    456778888888875

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.09  E-value=9.3e-07  Score=65.30  Aligned_cols=107  Identities=24%  Similarity=0.281  Sum_probs=74.9

Q ss_pred             hccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCC
Q 041851           10 ELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQ   89 (151)
Q Consensus        10 ~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~   89 (151)
                      .+..+++++.+++.+|.+..+...+..+.+|++++++.|..    ...    ..+..+..|+.|++.+|.+..+. .+..
T Consensus        90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I----~~i----~~l~~l~~L~~L~l~~N~i~~~~-~~~~  160 (414)
T KOG0531|consen   90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKI----TKL----EGLSTLTLLKELNLSGNLISDIS-GLES  160 (414)
T ss_pred             ccccccceeeeeccccchhhcccchhhhhcchheecccccc----ccc----cchhhccchhhheeccCcchhcc-CCcc
Confidence            35677788888888888876654466688888888887762    221    23455666888888888887654 4555


Q ss_pred             CCCCCEEeCCCCCCccCCcc-hhccCccCEEeccCCc
Q 041851           90 LSSLEELDLQENNFERIPES-ITQRSKLGRLSLRYCE  125 (151)
Q Consensus        90 l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~  125 (151)
                      ++.|+.+++++|.+..+... ...+..++.+.+.+|.
T Consensus       161 l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  161 LKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS  197 (414)
T ss_pred             chhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence            78888888888887755542 3566677777777764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=1.1e-07  Score=66.12  Aligned_cols=34  Identities=18%  Similarity=0.194  Sum_probs=20.9

Q ss_pred             cccccccccccce--ecChhhhcCCCCCeeeccccc
Q 041851           16 ALWSLHAIGTAIR--EVPSSFFRLNNIDLLSFQRSR   49 (151)
Q Consensus        16 ~L~~L~l~~~~i~--~~~~~~~~l~~L~~l~l~~n~   49 (151)
                      .+++||++...++  .+-.-+..+.+|+.+.+.+++
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~  221 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR  221 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc
Confidence            4677777776666  333345556667777666554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.00  E-value=6.6e-07  Score=63.26  Aligned_cols=37  Identities=11%  Similarity=0.007  Sum_probs=18.8

Q ss_pred             cCcccccccccccccce-ecCh----hhhcCCCCCeeecccc
Q 041851           12 GNLEALWSLHAIGTAIR-EVPS----SFFRLNNIDLLSFQRS   48 (151)
Q Consensus        12 ~~l~~L~~L~l~~~~i~-~~~~----~~~~l~~L~~l~l~~n   48 (151)
                      ..+++|+.+++++|.+. ..++    -+.....|++|.+.+|
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~  130 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC  130 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence            34456666666666655 2222    2233445556655544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.89  E-value=2.8e-06  Score=62.81  Aligned_cols=103  Identities=25%  Similarity=0.347  Sum_probs=61.5

Q ss_pred             CcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccC-CCCCCcccEEEcccCCCCccCcccCCCC
Q 041851           13 NLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLS-LDGLHTLTYLNLTDCGITRLPENIGQLS   91 (151)
Q Consensus        13 ~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~-~~~~~~L~~l~l~~~~l~~~~~~~~~l~   91 (151)
                      .+..+..+.+..|.++.+-..+..+.++..+++.+|....     .   .. +..+.+|+.+++++|.|+.+. .+..++
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-----i---~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~  140 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-----I---ENLLSSLVNLQVLDLSFNKITKLE-GLSTLT  140 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhh-----c---ccchhhhhcchheecccccccccc-chhhcc
Confidence            3445555556666665533335556667777777665211     1   22 455677777777777777643 345556


Q ss_pred             CCCEEeCCCCCCccCCcchhccCccCEEeccCCc
Q 041851           92 SLEELDLQENNFERIPESITQRSKLGRLSLRYCE  125 (151)
Q Consensus        92 ~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~  125 (151)
                      .|+.|++.+|.++.+.. +..++.|+.++++.|.
T Consensus       141 ~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~  173 (414)
T KOG0531|consen  141 LLKELNLSGNLISDISG-LESLKSLKLLDLSYNR  173 (414)
T ss_pred             chhhheeccCcchhccC-CccchhhhcccCCcch
Confidence            67777777777765543 3336667777777764

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.78  E-value=5e-06  Score=58.95  Aligned_cols=136  Identities=20%  Similarity=0.234  Sum_probs=87.2

Q ss_pred             hhccCcccccccccccccceecC-hh-------------hhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEE
Q 041851            9 DELGNLEALWSLHAIGTAIREVP-SS-------------FFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLN   74 (151)
Q Consensus         9 ~~~~~l~~L~~L~l~~~~i~~~~-~~-------------~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~   74 (151)
                      ..+.++..|++|.+.+|.+.... ..             +..-+.|+.+...+|+.-........  ..+...+.|+.+.
T Consensus       114 ~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A--~~~~~~~~leevr  191 (382)
T KOG1909|consen  114 ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA--EAFQSHPTLEEVR  191 (382)
T ss_pred             HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH--HHHHhccccceEE
Confidence            34566778888888888876322 11             12245678888887763221111122  4455667888888


Q ss_pred             cccCCCCc-----cCcccCCCCCCCEEeCCCCCCc-c----CCcchhccCccCEEeccCCccc--------ccCCCCCCC
Q 041851           75 LTDCGITR-----LPENIGQLSSLEELDLQENNFE-R----IPESITQRSKLGRLSLRYCERL--------QSLSKLPCK  136 (151)
Q Consensus        75 l~~~~l~~-----~~~~~~~l~~L~~L~l~~n~~~-~----~~~~~~~~~~L~~l~l~~n~~~--------~~~~~~~~~  136 (151)
                      +..|+|..     +...+.++++|+.|+|..|.++ .    +-..+..+++|+.++++.|..-        ..+....++
T Consensus       192 ~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~  271 (382)
T KOG1909|consen  192 LSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPS  271 (382)
T ss_pred             EecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCC
Confidence            88888763     2346778889999999888776 2    2334566678888888887421        222234577


Q ss_pred             cceEcccCCc
Q 041851          137 LHELDAHHCT  146 (151)
Q Consensus       137 l~~l~l~~~~  146 (151)
                      |+.+.+.+|.
T Consensus       272 L~vl~l~gNe  281 (382)
T KOG1909|consen  272 LEVLELAGNE  281 (382)
T ss_pred             CceeccCcch
Confidence            8888877664

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.64  E-value=1.8e-06  Score=53.78  Aligned_cols=93  Identities=23%  Similarity=0.284  Sum_probs=73.9

Q ss_pred             ccCcccccccccccccceecChhhhc-CCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCC
Q 041851           11 LGNLEALWSLHAIGTAIREVPSSFFR-LNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQ   89 (151)
Q Consensus        11 ~~~l~~L~~L~l~~~~i~~~~~~~~~-l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~   89 (151)
                      +.....|+..++++|.+...|+.+.. ++..+.+++++|.    +. +.|  +.+..|+.|+.++++.|.+.-.|+-+..
T Consensus        49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne----is-dvP--eE~Aam~aLr~lNl~~N~l~~~p~vi~~  121 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE----IS-DVP--EELAAMPALRSLNLRFNPLNAEPRVIAP  121 (177)
T ss_pred             HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh----hh-hch--HHHhhhHHhhhcccccCccccchHHHHH
Confidence            33445677789999999999887765 4578999999886    32 345  5577899999999999999988887777


Q ss_pred             CCCCCEEeCCCCCCccCCcch
Q 041851           90 LSSLEELDLQENNFERIPESI  110 (151)
Q Consensus        90 l~~L~~L~l~~n~~~~~~~~~  110 (151)
                      +.++..|+..+|....+|-.+
T Consensus       122 L~~l~~Lds~~na~~eid~dl  142 (177)
T KOG4579|consen  122 LIKLDMLDSPENARAEIDVDL  142 (177)
T ss_pred             HHhHHHhcCCCCccccCcHHH
Confidence            889999999998887777653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.58  E-value=6.5e-05  Score=51.40  Aligned_cols=59  Identities=24%  Similarity=0.325  Sum_probs=23.6

Q ss_pred             CCCcccEEEcccC--CCCc-cCcccCCCCCCCEEeCCCCCCcc--CCcchhccCccCEEeccCC
Q 041851           66 GLHTLTYLNLTDC--GITR-LPENIGQLSSLEELDLQENNFER--IPESITQRSKLGRLSLRYC  124 (151)
Q Consensus        66 ~~~~L~~l~l~~~--~l~~-~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~L~~l~l~~n  124 (151)
                      .+++|+.|.++.|  ++.. ++.....+++|+++++++|.++.  -...+..+.+|..|++..|
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~  126 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC  126 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence            3444444444444  2222 22222223445555555544441  1112333444444444444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.55  E-value=0.00053  Score=50.52  Aligned_cols=54  Identities=20%  Similarity=0.354  Sum_probs=33.6

Q ss_pred             CCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccc-cC--CCCCCCcceEcccCCcc
Q 041851           91 SSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQ-SL--SKLPCKLHELDAHHCTA  147 (151)
Q Consensus        91 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~--~~~~~~l~~l~l~~~~~  147 (151)
                      ++|++|+++++....+|..+.  .+|+.|+++.+.... .+  +.++.++ .+.+.+|-.
T Consensus       156 sSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lk  212 (426)
T PRK15386        156 PSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVL  212 (426)
T ss_pred             CcccEEEecCCCcccCccccc--ccCcEEEecccccccccCccccccccc-Eechhhhcc
Confidence            478899998887666564333  478889987652111 11  1344566 777777643

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=3.2e-06  Score=59.13  Aligned_cols=67  Identities=21%  Similarity=0.234  Sum_probs=33.1

Q ss_pred             ccCcccccccccccccce-ecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851           11 LGNLEALWSLHAIGTAIR-EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus        11 ~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      +.+|.+|+-|.+.++.+. .+-..+..=.+|+.++++.+.+   +..... --.+..++.|..|++++|.+.
T Consensus       206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG---~t~n~~-~ll~~scs~L~~LNlsWc~l~  273 (419)
T KOG2120|consen  206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSG---FTENAL-QLLLSSCSRLDELNLSWCFLF  273 (419)
T ss_pred             HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccc---cchhHH-HHHHHhhhhHhhcCchHhhcc
Confidence            455666777777776665 3333344455566666663322   211111 012334555555555555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.47  E-value=2.6e-05  Score=61.03  Aligned_cols=104  Identities=22%  Similarity=0.263  Sum_probs=73.9

Q ss_pred             CCCCCeeeccccccCCccccccccccCCC-CCCcccEEEcccCCCCc--cCcccCCCCCCCEEeCCCCCCccCCcchhcc
Q 041851           37 LNNIDLLSFQRSRGHKQMSLSLPITLSLD-GLHTLTYLNLTDCGITR--LPENIGQLSSLEELDLQENNFERIPESITQR  113 (151)
Q Consensus        37 l~~L~~l~l~~n~~~~~~~~~~~~~~~~~-~~~~L~~l~l~~~~l~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  113 (151)
                      -.+|++|++++   ........+  ..++ .+|+|+.|.+.+-.+..  +.+....+++|..||++++.++.+ ..++++
T Consensus       121 r~nL~~LdI~G---~~~~s~~W~--~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~L  194 (699)
T KOG3665|consen  121 RQNLQHLDISG---SELFSNGWP--KKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRL  194 (699)
T ss_pred             HHhhhhcCccc---cchhhccHH--HHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhcc
Confidence            45688888874   222333344  3333 48899999998876543  667778999999999999999877 668899


Q ss_pred             CccCEEeccCCcccc--cCCCC--CCCcceEcccCCc
Q 041851          114 SKLGRLSLRYCERLQ--SLSKL--PCKLHELDAHHCT  146 (151)
Q Consensus       114 ~~L~~l~l~~n~~~~--~~~~~--~~~l~~l~l~~~~  146 (151)
                      ++|++|.+.+=.+..  ++-..  .++|+.||++.-+
T Consensus       195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence            999999987643221  12222  3899999998543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.38  E-value=5.6e-05  Score=53.08  Aligned_cols=85  Identities=20%  Similarity=0.310  Sum_probs=45.5

Q ss_pred             Ccccccccccccccce---ecChhhhcCCCCCeeeccccccCCccccccccccCC-CCCCcccEEEcccCCCCc--cCcc
Q 041851           13 NLEALWSLHAIGTAIR---EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSL-DGLHTLTYLNLTDCGITR--LPEN   86 (151)
Q Consensus        13 ~l~~L~~L~l~~~~i~---~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~-~~~~~L~~l~l~~~~l~~--~~~~   86 (151)
                      .+..++.+|+.+|.++   ++..-...++.+++|+++.|+...    .+.   .. -...+|+++.+.+..+..  ....
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s----~I~---~lp~p~~nl~~lVLNgT~L~w~~~~s~  141 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS----DIK---SLPLPLKNLRVLVLNGTGLSWTQSTSS  141 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC----ccc---cCcccccceEEEEEcCCCCChhhhhhh
Confidence            3445666666666665   233334556667777776665211    111   11 134466666666666553  3334


Q ss_pred             cCCCCCCCEEeCCCCCCc
Q 041851           87 IGQLSSLEELDLQENNFE  104 (151)
Q Consensus        87 ~~~l~~L~~L~l~~n~~~  104 (151)
                      +..+|.++.++++.|...
T Consensus       142 l~~lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen  142 LDDLPKVTELHMSDNSLR  159 (418)
T ss_pred             hhcchhhhhhhhccchhh
Confidence            555666666666666443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.04  E-value=0.0005  Score=47.16  Aligned_cols=107  Identities=20%  Similarity=0.226  Sum_probs=67.1

Q ss_pred             cCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccC--cccCC
Q 041851           12 GNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLP--ENIGQ   89 (151)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~--~~~~~   89 (151)
                      .....++.+.+.+..++.+. .+..+++|+.|.++.|...  +....+  .....+++|+++++++|.++.+.  ..+..
T Consensus        40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~--~~~~l~--vl~e~~P~l~~l~ls~Nki~~lstl~pl~~  114 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRR--VSGGLE--VLAEKAPNLKVLNLSGNKIKDLSTLRPLKE  114 (260)
T ss_pred             ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCccc--ccccce--ehhhhCCceeEEeecCCccccccccchhhh
Confidence            34556666666666655332 2445788888888877311  233333  23445588999999999888521  24556


Q ss_pred             CCCCCEEeCCCCCCccCCc----chhccCccCEEeccC
Q 041851           90 LSSLEELDLQENNFERIPE----SITQRSKLGRLSLRY  123 (151)
Q Consensus        90 l~~L~~L~l~~n~~~~~~~----~~~~~~~L~~l~l~~  123 (151)
                      +.+|..|++.+|..+.+..    .+..+++|++++-..
T Consensus       115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            7778888888887664322    345667777776543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.94  E-value=2.1e-05  Score=54.60  Aligned_cols=61  Identities=25%  Similarity=0.252  Sum_probs=31.0

Q ss_pred             CCCcccEEEcccCCCCccCcccCCCCCCCEEeCCCCCCccCCc--chhccCccCEEeccCCccc
Q 041851           66 GLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPE--SITQRSKLGRLSLRYCERL  127 (151)
Q Consensus        66 ~~~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~  127 (151)
                      .|+.|++|.|+.|.|+.+. .+.++++|++|+|..|.+..+..  -+.++++|+.|-+..|+-+
T Consensus        39 kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc  101 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCC  101 (388)
T ss_pred             hcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcc
Confidence            4555555555555555432 34455555555555555554433  2344555555555555433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.81  E-value=0.0092  Score=36.53  Aligned_cols=103  Identities=13%  Similarity=0.244  Sum_probs=55.5

Q ss_pred             hccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCc-cc
Q 041851           10 ELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPE-NI   87 (151)
Q Consensus        10 ~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~   87 (151)
                      .+..+++|+.+.+.. .+..++. .+..+.+++.+.+..+-     .....  ..|..+.+++.+.+.. .+..++. .+
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~~-----~~i~~--~~F~~~~~l~~i~~~~-~~~~i~~~~F   77 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNNL-----TSIGD--NAFSNCKSLESITFPN-NLKSIGDNAF   77 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESSTT-----SCE-T--TTTTT-TT-EEEEETS-TT-EE-TTTT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhcccccccccccccccc-----cccce--eeeecccccccccccc-cccccccccc
Confidence            456777888888875 5666644 67778789988887531     11112  4577777899998865 5555443 55


Q ss_pred             CCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccC
Q 041851           88 GQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRY  123 (151)
Q Consensus        88 ~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~  123 (151)
                      ..+++++.+.+..+ +..++. .+.+. .++.+.+..
T Consensus        78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            56889999998765 554433 45555 788887765

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=0.00092  Score=47.18  Aligned_cols=104  Identities=20%  Similarity=0.178  Sum_probs=65.9

Q ss_pred             ccccccccccceecCh--hhhc-CCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCccc-CCCCC
Q 041851           17 LWSLHAIGTAIREVPS--SFFR-LNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENI-GQLSS   92 (151)
Q Consensus        17 L~~L~l~~~~i~~~~~--~~~~-l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~-~~l~~   92 (151)
                      +..+-+.++.|.....  .++. ...++.+++++|.... .+ ++.  ..+.+++.+++|+++-|.+...-+.+ ....+
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSd-Ws-eI~--~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n  122 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISD-WS-EIG--AILEQLPALTTLNLSCNSLSSDIKSLPLPLKN  122 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhcc-HH-HHH--HHHhcCccceEeeccCCcCCCccccCcccccc
Confidence            3344455555543322  2222 4557888999887322 11 222  35668899999999999887622233 45678


Q ss_pred             CCEEeCCCCCCc--cCCcchhccCccCEEeccCC
Q 041851           93 LEELDLQENNFE--RIPESITQRSKLGRLSLRYC  124 (151)
Q Consensus        93 L~~L~l~~n~~~--~~~~~~~~~~~L~~l~l~~n  124 (151)
                      ++.|-+.++.+.  .....+..+|.++.+.++.|
T Consensus       123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            999999888765  44455667777778877776

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.52  E-value=0.00065  Score=28.51  Aligned_cols=20  Identities=35%  Similarity=0.464  Sum_probs=14.4

Q ss_pred             cccccccccccceecChhhh
Q 041851           16 ALWSLHAIGTAIREVPSSFF   35 (151)
Q Consensus        16 ~L~~L~l~~~~i~~~~~~~~   35 (151)
                      +|++|++++|.++.+|+++.
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEESEEGTTTT
T ss_pred             CccEEECCCCcCEeCChhhc
Confidence            46788888888777776543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.49  E-value=0.00013  Score=50.81  Aligned_cols=98  Identities=23%  Similarity=0.278  Sum_probs=61.1

Q ss_pred             cccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCc--ccCCCC
Q 041851           14 LEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPE--NIGQLS   91 (151)
Q Consensus        14 l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~--~~~~l~   91 (151)
                      +.++..|+.-+++++++.- ...|+.|+.+.++-|+    +..-    ..+..++.|+.+.|..|.|.++..  .+..++
T Consensus        18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNk----IssL----~pl~rCtrLkElYLRkN~I~sldEL~YLknlp   88 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNK----ISSL----APLQRCTRLKELYLRKNCIESLDELEYLKNLP   88 (388)
T ss_pred             HHHhhhhcccCCCccHHHH-HHhcccceeEEeeccc----cccc----hhHHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence            4556667777777765532 3457778888887665    3322    336667777888888877776432  556777


Q ss_pred             CCCEEeCCCCCCc-cCCc-----chhccCccCEEe
Q 041851           92 SLEELDLQENNFE-RIPE-----SITQRSKLGRLS  120 (151)
Q Consensus        92 ~L~~L~l~~n~~~-~~~~-----~~~~~~~L~~l~  120 (151)
                      +|+.|.|..|..- ..+.     .+-.+++|+.||
T Consensus        89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8888877777543 2221     234556666665

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.07  E-value=0.0038  Score=24.37  Aligned_cols=11  Identities=45%  Similarity=0.733  Sum_probs=3.2

Q ss_pred             CCEEeCCCCCC
Q 041851           93 LEELDLQENNF  103 (151)
Q Consensus        93 L~~L~l~~n~~  103 (151)
                      |+.|++++|.+
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            33333433333

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.81  E-value=0.01  Score=41.57  Aligned_cols=137  Identities=13%  Similarity=0.080  Sum_probs=78.3

Q ss_pred             hhccCcccccccccccccce-ecCh----hhhcCCCCCeeeccccccCCcccc-cc-------ccccCCCCCCcccEEEc
Q 041851            9 DELGNLEALWSLHAIGTAIR-EVPS----SFFRLNNIDLLSFQRSRGHKQMSL-SL-------PITLSLDGLHTLTYLNL   75 (151)
Q Consensus         9 ~~~~~l~~L~~L~l~~~~i~-~~~~----~~~~l~~L~~l~l~~n~~~~~~~~-~~-------~~~~~~~~~~~L~~l~l   75 (151)
                      +.+-.|+.++..++++|.+. ..|+    .++....+.+|.+.+|. ...+.+ .+       ..+.....-+.|+++..
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vic  164 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC  164 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence            34567888999999999887 4443    34455678888888773 221111 00       10011224456888888


Q ss_pred             ccCCCCccCc-----ccCCCCCCCEEeCCCCCCc-c-CCc----chhccCccCEEeccCCcccc-------cCCCCCCCc
Q 041851           76 TDCGITRLPE-----NIGQLSSLEELDLQENNFE-R-IPE----SITQRSKLGRLSLRYCERLQ-------SLSKLPCKL  137 (151)
Q Consensus        76 ~~~~l~~~~~-----~~~~l~~L~~L~l~~n~~~-~-~~~----~~~~~~~L~~l~l~~n~~~~-------~~~~~~~~l  137 (151)
                      +.|++...+.     .+..-..+....+..|.+. . +..    .+..+.+|++|+++.|.+..       ..-+.++.|
T Consensus       165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l  244 (388)
T COG5238         165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL  244 (388)
T ss_pred             ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence            8887765443     2222356777777777765 2 111    23455678888888775321       111223556


Q ss_pred             ceEcccCCc
Q 041851          138 HELDAHHCT  146 (151)
Q Consensus       138 ~~l~l~~~~  146 (151)
                      +.|.+..|-
T Consensus       245 rEL~lnDCl  253 (388)
T COG5238         245 RELRLNDCL  253 (388)
T ss_pred             hhccccchh
Confidence            777776663

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.29  E-value=0.0032  Score=47.09  Aligned_cols=113  Identities=23%  Similarity=0.314  Sum_probs=63.3

Q ss_pred             Cccccccccccccc-cee--cChhhhcCCCCCeeeccccccCCcccccc-ccccCCCCCCcccEEEcccCC-CCc--cCc
Q 041851           13 NLEALWSLHAIGTA-IRE--VPSSFFRLNNIDLLSFQRSRGHKQMSLSL-PITLSLDGLHTLTYLNLTDCG-ITR--LPE   85 (151)
Q Consensus        13 ~l~~L~~L~l~~~~-i~~--~~~~~~~l~~L~~l~l~~n~~~~~~~~~~-~~~~~~~~~~~L~~l~l~~~~-l~~--~~~   85 (151)
                      .++.++.+.+.++. ++.  +-......+.|+.+++..+  +..+.... ........+++++.++++++. +++  +..
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~  263 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGC--CLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA  263 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCc--ccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence            35677777777654 333  2234556777888887742  11011000 000223345778888888877 665  222


Q ss_pred             ccCCCCCCCEEeCCCCC-Cc--cCCcchhccCccCEEeccCCccc
Q 041851           86 NIGQLSSLEELDLQENN-FE--RIPESITQRSKLGRLSLRYCERL  127 (151)
Q Consensus        86 ~~~~l~~L~~L~l~~n~-~~--~~~~~~~~~~~L~~l~l~~n~~~  127 (151)
                      ....+++|+.|.+.++. ++  .+-.....++.|+.++++.|..+
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            22236788888876665 44  23233445677888888877654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.51  E-value=0.046  Score=23.60  Aligned_cols=18  Identities=39%  Similarity=0.731  Sum_probs=10.9

Q ss_pred             CCCCEEeCCCCCCccCCc
Q 041851           91 SSLEELDLQENNFERIPE  108 (151)
Q Consensus        91 ~~L~~L~l~~n~~~~~~~  108 (151)
                      ++|+.|++++|.++.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            455666666666665554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.51  E-value=0.046  Score=23.60  Aligned_cols=18  Identities=39%  Similarity=0.731  Sum_probs=10.9

Q ss_pred             CCCCEEeCCCCCCccCCc
Q 041851           91 SSLEELDLQENNFERIPE  108 (151)
Q Consensus        91 ~~L~~L~l~~n~~~~~~~  108 (151)
                      ++|+.|++++|.++.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            455666666666665554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.45  E-value=0.0064  Score=42.61  Aligned_cols=115  Identities=19%  Similarity=0.217  Sum_probs=72.5

Q ss_pred             hhccCcccccccccccccceecC-hh-------------hhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEE
Q 041851            9 DELGNLEALWSLHAIGTAIREVP-SS-------------FFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLN   74 (151)
Q Consensus         9 ~~~~~l~~L~~L~l~~~~i~~~~-~~-------------~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~   74 (151)
                      +.++.-..|.+|.+++|.+..+. ..             +.+-+.|+.+....|+...+......  ..+.....++.+.
T Consensus       114 d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a--~~l~sh~~lk~vk  191 (388)
T COG5238         114 DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSA--ALLESHENLKEVK  191 (388)
T ss_pred             HHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHH--HHHHhhcCceeEE
Confidence            45667778999999999977332 22             22457788999988874332111111  2233335788888


Q ss_pred             cccCCCCc--cC----cccCCCCCCCEEeCCCCCCccC-----CcchhccCccCEEeccCCc
Q 041851           75 LTDCGITR--LP----ENIGQLSSLEELDLQENNFERI-----PESITQRSKLGRLSLRYCE  125 (151)
Q Consensus        75 l~~~~l~~--~~----~~~~~l~~L~~L~l~~n~~~~~-----~~~~~~~~~L~~l~l~~n~  125 (151)
                      +..|+|+.  +.    ..+..+.+|..|++..|.++..     ..+.+.++.|+.|.+..|-
T Consensus       192 i~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl  253 (388)
T COG5238         192 IQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL  253 (388)
T ss_pred             eeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence            88888773  11    2455678888888888877622     2244555667778777663

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.82  E-value=0.00085  Score=45.78  Aligned_cols=89  Identities=10%  Similarity=0.144  Sum_probs=53.5

Q ss_pred             hhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccC
Q 041851            9 DELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIG   88 (151)
Q Consensus         9 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~   88 (151)
                      ..+...+..+.||++.|++......++-+..+..++++.|.    +. ..|  ..++....+..++++.|+.+..|...+
T Consensus        36 ~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq----~~-~~~--~d~~q~~e~~~~~~~~n~~~~~p~s~~  108 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ----IK-FLP--KDAKQQRETVNAASHKNNHSQQPKSQK  108 (326)
T ss_pred             hhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhh----Hh-hCh--hhHHHHHHHHHHHhhccchhhCCcccc
Confidence            34455666666777766655544445555555566666554    11 223  445555566666677776666666777


Q ss_pred             CCCCCCEEeCCCCCCc
Q 041851           89 QLSSLEELDLQENNFE  104 (151)
Q Consensus        89 ~l~~L~~L~l~~n~~~  104 (151)
                      ..+++++++...|.+.
T Consensus       109 k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  109 KEPHPKKNEQKKTEFF  124 (326)
T ss_pred             ccCCcchhhhccCcch
Confidence            7777777777766654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.81  E-value=0.21  Score=30.38  Aligned_cols=96  Identities=16%  Similarity=0.293  Sum_probs=48.8

Q ss_pred             hccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCc-cc
Q 041851           10 ELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPE-NI   87 (151)
Q Consensus        10 ~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~   87 (151)
                      .+..+.+++.+.+.++ +..++. .+..+.+++.+.+..+.     .....  ..|..+.+++.+.+..+ +..++. .+
T Consensus        30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~~-----~~i~~--~~F~~~~~l~~i~~~~~-~~~i~~~~f  100 (129)
T PF13306_consen   30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNNL-----KSIGD--NAFSNCTNLKNIDIPSN-ITEIGSSSF  100 (129)
T ss_dssp             TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETSTT------EE-T--TTTTT-TTECEEEETTT--BEEHTTTT
T ss_pred             hccccccccccccccc-ccccceeeeecccccccccccccc-----ccccc--ccccccccccccccCcc-ccEEchhhh
Confidence            3566778999999875 665543 67777789999886421     11112  45777889999998765 666443 45


Q ss_pred             CCCCCCCEEeCCCCCCccCCc-chhccCcc
Q 041851           88 GQLSSLEELDLQENNFERIPE-SITQRSKL  116 (151)
Q Consensus        88 ~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L  116 (151)
                      ... .++.+.+.. .+..++. .+.++++|
T Consensus       101 ~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen  101 SNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cCC-CceEEEECC-CccEECCccccccccC
Confidence            555 888888876 3343433 45555544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.58  E-value=0.015  Score=38.83  Aligned_cols=62  Identities=26%  Similarity=0.315  Sum_probs=29.1

Q ss_pred             cCCCCCCcccEEEcccCC-CCc--cCcccCCCCCCCEEeCCCC-CCc-cCCcchhccCccCEEeccC
Q 041851           62 LSLDGLHTLTYLNLTDCG-ITR--LPENIGQLSSLEELDLQEN-NFE-RIPESITQRSKLGRLSLRY  123 (151)
Q Consensus        62 ~~~~~~~~L~~l~l~~~~-l~~--~~~~~~~l~~L~~L~l~~n-~~~-~~~~~~~~~~~L~~l~l~~  123 (151)
                      +++..+++++.+.+.+|. +.+  +...-+..++|+.|++++| .|+ .-...+..+++|+.|.+..
T Consensus       119 e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  119 EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            344455555555555554 222  1111113456666666654 344 2223445555666555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=91.82  E-value=0.025  Score=42.33  Aligned_cols=111  Identities=19%  Similarity=0.116  Sum_probs=66.7

Q ss_pred             hhccCcccccccccccc-c-ceecC----hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCC-CC
Q 041851            9 DELGNLEALWSLHAIGT-A-IREVP----SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCG-IT   81 (151)
Q Consensus         9 ~~~~~l~~L~~L~l~~~-~-i~~~~----~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-l~   81 (151)
                      .....+++|+.|+++++ . +...+    .....+++++.+++....   .+.+..- ......+++|+.+.+.++. ++
T Consensus       208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~---~isd~~l-~~l~~~c~~L~~L~l~~c~~lt  283 (482)
T KOG1947|consen  208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG---LVTDIGL-SALASRCPNLETLSLSNCSNLT  283 (482)
T ss_pred             HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh---ccCchhH-HHHHhhCCCcceEccCCCCccc
Confidence            45567889999999873 2 22212    234456888899988543   1222211 0112237789999988887 66


Q ss_pred             c--cCcccCCCCCCCEEeCCCCCCc---cCCcchhccCccCEEeccC
Q 041851           82 R--LPENIGQLSSLEELDLQENNFE---RIPESITQRSKLGRLSLRY  123 (151)
Q Consensus        82 ~--~~~~~~~l~~L~~L~l~~n~~~---~~~~~~~~~~~L~~l~l~~  123 (151)
                      +  +......+++|++|+++.+...   .+......+++++.+.+..
T Consensus       284 ~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  284 DEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             hhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence            5  5455567888999999987543   2222333455555554443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.01  E-value=0.11  Score=34.80  Aligned_cols=78  Identities=18%  Similarity=0.215  Sum_probs=49.7

Q ss_pred             cccEEEcccCCCCc-cCcccCCCCCCCEEeCCCCCCccCCc----chh-ccCccCEEeccCCcccccCCC----CCCCcc
Q 041851           69 TLTYLNLTDCGITR-LPENIGQLSSLEELDLQENNFERIPE----SIT-QRSKLGRLSLRYCERLQSLSK----LPCKLH  138 (151)
Q Consensus        69 ~L~~l~l~~~~l~~-~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~-~~~~L~~l~l~~n~~~~~~~~----~~~~l~  138 (151)
                      .++.++-+++.|.. .-+.+..++.++.+.+.++.  .+..    .++ -.++|+.|++++|+.+++..-    -+++|+
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck--~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK--YFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheecccc--chhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            47788888877764 34566677777777776653  2222    122 336888999998887766552    237777


Q ss_pred             eEcccCCccc
Q 041851          139 ELDAHHCTAL  148 (151)
Q Consensus       139 ~l~l~~~~~l  148 (151)
                      .|.+.+.+..
T Consensus       180 ~L~l~~l~~v  189 (221)
T KOG3864|consen  180 RLHLYDLPYV  189 (221)
T ss_pred             HHHhcCchhh
Confidence            7777665543

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=89.87  E-value=0.29  Score=21.08  Aligned_cols=15  Identities=40%  Similarity=0.627  Sum_probs=10.4

Q ss_pred             CCcceEcccCCcccc
Q 041851          135 CKLHELDAHHCTALE  149 (151)
Q Consensus       135 ~~l~~l~l~~~~~l~  149 (151)
                      ++|+.|++++|..++
T Consensus         2 ~~L~~L~l~~C~~it   16 (26)
T smart00367        2 PNLRELDLSGCTNIT   16 (26)
T ss_pred             CCCCEeCCCCCCCcC
Confidence            567777777777665

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=89.43  E-value=0.3  Score=21.27  Aligned_cols=18  Identities=39%  Similarity=0.754  Sum_probs=11.8

Q ss_pred             CCCCEEeCCCCCCccCCc
Q 041851           91 SSLEELDLQENNFERIPE  108 (151)
Q Consensus        91 ~~L~~L~l~~n~~~~~~~  108 (151)
                      ++|+.|++++|.++.+|.
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            356667777777766665

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.71  E-value=0.0045  Score=42.39  Aligned_cols=90  Identities=18%  Similarity=0.229  Sum_probs=69.6

Q ss_pred             hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCCCCCCEEeCCCCCCccCCcchhc
Q 041851           33 SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQ  112 (151)
Q Consensus        33 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  112 (151)
                      .+..+...+.+|+..|+.     ..+.  ..|+.++.+.-++++.|.+.-.|..+++...+..+++..|..+..|..++.
T Consensus        37 ei~~~kr~tvld~~s~r~-----vn~~--~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k  109 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRL-----VNLG--KNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKK  109 (326)
T ss_pred             hhhccceeeeehhhhhHH-----Hhhc--cchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccc
Confidence            455566777888887751     1122  456667778888999888888888888888889999999988899999999


Q ss_pred             cCccCEEeccCCccccc
Q 041851          113 RSKLGRLSLRYCERLQS  129 (151)
Q Consensus       113 ~~~L~~l~l~~n~~~~~  129 (151)
                      .+.++.++.-+++....
T Consensus       110 ~~~~k~~e~k~~~~~~~  126 (326)
T KOG0473|consen  110 EPHPKKNEQKKTEFFRK  126 (326)
T ss_pred             cCCcchhhhccCcchHH
Confidence            99999999888875433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=88.50  E-value=0.19  Score=37.36  Aligned_cols=82  Identities=20%  Similarity=0.297  Sum_probs=35.7

Q ss_pred             CCcccEEEcccCCCCc---cCcccCCCCCCCEEeCCCCCCccC------CcchhccCccCEEeccCCcccccCC----CC
Q 041851           67 LHTLTYLNLTDCGITR---LPENIGQLSSLEELDLQENNFERI------PESITQRSKLGRLSLRYCERLQSLS----KL  133 (151)
Q Consensus        67 ~~~L~~l~l~~~~l~~---~~~~~~~l~~L~~L~l~~n~~~~~------~~~~~~~~~L~~l~l~~n~~~~~~~----~~  133 (151)
                      ++.|+.+++..+....   +.+.-.+.+.++.+.++.+....-      ...-..+..+..+.+++++.+.+-.    ..
T Consensus       345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~  424 (483)
T KOG4341|consen  345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI  424 (483)
T ss_pred             ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence            3445555555544221   222333455555555554432211      1111223345555555555432221    23


Q ss_pred             CCCcceEcccCCccc
Q 041851          134 PCKLHELDAHHCTAL  148 (151)
Q Consensus       134 ~~~l~~l~l~~~~~l  148 (151)
                      +++|+.+++.+|.++
T Consensus       425 c~~Leri~l~~~q~v  439 (483)
T KOG4341|consen  425 CRNLERIELIDCQDV  439 (483)
T ss_pred             Ccccceeeeechhhh
Confidence            355555666555544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=87.81  E-value=0.13  Score=38.23  Aligned_cols=109  Identities=19%  Similarity=0.257  Sum_probs=68.0

Q ss_pred             CCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCC-CCc--cCcccCCCCCCCEEeCCCCCCc---cCCcch
Q 041851           37 LNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCG-ITR--LPENIGQLSSLEELDLQENNFE---RIPESI  110 (151)
Q Consensus        37 l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-l~~--~~~~~~~l~~L~~L~l~~n~~~---~~~~~~  110 (151)
                      +..|+.+..+...   .+.+..- ...-.+..+|+++.+..+. +++  +...-...+.|+.+++......   .+...-
T Consensus       293 c~~lq~l~~s~~t---~~~d~~l-~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls  368 (483)
T KOG4341|consen  293 CHALQVLCYSSCT---DITDEVL-WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS  368 (483)
T ss_pred             hhHhhhhcccCCC---CCchHHH-HHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence            5556677666332   2222111 0223356789999999886 454  3333346788899998877544   233444


Q ss_pred             hccCccCEEeccCCcccccCC--------CCCCCcceEcccCCcccc
Q 041851          111 TQRSKLGRLSLRYCERLQSLS--------KLPCKLHELDAHHCTALE  149 (151)
Q Consensus       111 ~~~~~L~~l~l~~n~~~~~~~--------~~~~~l~~l~l~~~~~l~  149 (151)
                      .+++.|+.+.++.|..+.+-.        .....+..+++..|+.++
T Consensus       369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~  415 (483)
T KOG4341|consen  369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT  415 (483)
T ss_pred             cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence            567889999999887665442        223667888888887665

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=86.50  E-value=0.74  Score=20.02  Aligned_cols=15  Identities=47%  Similarity=0.837  Sum_probs=8.5

Q ss_pred             CCCCEEeCCCCCCcc
Q 041851           91 SSLEELDLQENNFER  105 (151)
Q Consensus        91 ~~L~~L~l~~n~~~~  105 (151)
                      .+|+.|+++.|.++.
T Consensus         2 ~~L~~L~L~~NkI~~   16 (26)
T smart00365        2 TNLEELDLSQNKIKK   16 (26)
T ss_pred             CccCEEECCCCccce
Confidence            455666666665543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.83  E-value=0.26  Score=20.68  Aligned_cols=14  Identities=21%  Similarity=0.152  Sum_probs=8.0

Q ss_pred             ccccccccccccce
Q 041851           15 EALWSLHAIGTAIR   28 (151)
Q Consensus        15 ~~L~~L~l~~~~i~   28 (151)
                      ++|++|++++|.++
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            56667777777665

...

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=82.26  E-value=0.73  Score=35.54  Aligned_cols=64  Identities=17%  Similarity=0.178  Sum_probs=38.5

Q ss_pred             CCCcccEEEcccCCCCc---cCcccCCCCCCCEEeCCCC--CCccCCcchhcc--CccCEEeccCCcccccC
Q 041851           66 GLHTLTYLNLTDCGITR---LPENIGQLSSLEELDLQEN--NFERIPESITQR--SKLGRLSLRYCERLQSL  130 (151)
Q Consensus        66 ~~~~L~~l~l~~~~l~~---~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~--~~L~~l~l~~n~~~~~~  130 (151)
                      +.+.+..+++++|++..   +.......|++..|+|++|  .+... .++...  ..|+.|-+.+|+.++.+
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc~tf  286 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLCTTF  286 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCccccch
Confidence            44567777788887664   3333445678888888887  33222 223222  35677888888765443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	151
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	8e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 77.7 bits (192), Expect = 5e-18
 Identities = 41/158 (25%), Positives = 61/158 (38%), Gaps = 12/158 (7%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSL-----S 57
            L  LPD +     L +L      +R +P+S   LN +  LS       +   L     S
Sbjct: 115 GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI--RACPELTELPEPLAS 172

Query: 58  LPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLG 117
              +    GL  L  L L   GI  LP +I  L +L+ L ++ +    +  +I    KL 
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232

Query: 118 RLSLRYCERLQSL----SKLPCKLHELDAHHCTALESL 151
            L LR C  L++           L  L    C+ L +L
Sbjct: 233 ELDLRGCTALRNYPPIFGGRA-PLKRLILKDCSNLLTL 269

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.9 bits (177), Expect = 6e-16
 Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 18/149 (12%)

Query: 3   HLQRLPDELGNLEA---------LWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQ 53
            L  LP+ L + +A         L SL    T IR +P+S   L N+  L  + S     
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP---- 217

Query: 54  MSLSLPITLSLDGLHTLTYLNLTDC-GITRLPENIGQLSSLEELDLQE-NNFERIPESIT 111
              +L    ++  L  L  L+L  C  +   P   G  + L+ L L++ +N   +P  I 
Sbjct: 218 -LSALG--PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274

Query: 112 QRSKLGRLSLRYCERLQSLSKLPCKLHEL 140
           + ++L +L LR C  L  L  L  +L   
Sbjct: 275 RLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.5 bits (176), Expect = 8e-16
 Identities = 29/155 (18%), Positives = 51/155 (32%), Gaps = 18/155 (11%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITL 62
            L+   D L   +  ++        R    S +R  N +    +   G      +    L
Sbjct: 24  ALRPYHDVLSQWQRHYNA------DRNRWHSAWRQANSNNPQIETRTGRALK--ATADLL 75

Query: 63  SLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLR 122
                     L L    + + P+   +LS L+ + +       +P+++ Q + L  L+L 
Sbjct: 76  EDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLA 135

Query: 123 YCERLQSLSKLPC------KLHELDAHHCTALESL 151
                  L  LP       +L EL    C  L  L
Sbjct: 136 RN----PLRALPASIASLNRLRELSIRACPELTEL 166

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.8 bits (169), Expect = 7e-15
 Identities = 43/166 (25%), Positives = 67/166 (40%), Gaps = 29/166 (17%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSL-SLPIT 61
            L + PD+   L  L  +      + E+P +  +   ++ L+  R+       L +LP  
Sbjct: 92  PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN------PLRALPA- 144

Query: 62  LSLDGLHTLTYLNLTDC-GITRLPENIGQ---------LSSLEELDLQENNFERIPESIT 111
            S+  L+ L  L++  C  +T LPE +           L +L+ L L+      +P SI 
Sbjct: 145 -SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIA 203

Query: 112 QRSKLGRLSLRYCERLQSLSKLP------CKLHELDAHHCTALESL 151
               L  L +R       LS L        KL ELD   CTAL + 
Sbjct: 204 NLQNLKSLKIRNS----PLSALGPAIHHLPKLEELDLRGCTALRNY 245

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 8/137 (5%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITL 62
            ++ LP  + NL+ L SL    + +  +  +   L  ++ L  +          + P   
Sbjct: 194 GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR----GCTALRNYPPIF 249

Query: 63  SLDGLHTLTYLNLTDC-GITRLPENIGQLSSLEELDLQEN-NFERIPESITQRSKLGRLS 120
              G   L  L L DC  +  LP +I +L+ LE+LDL+   N  R+P  I Q      + 
Sbjct: 250 G--GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307

Query: 121 LRYCERLQSLSKLPCKL 137
           +    + Q     P   
Sbjct: 308 VPPHLQAQLDQHRPVAR 324

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.5 bits (144), Expect = 2e-11
 Identities = 34/146 (23%), Positives = 51/146 (34%), Gaps = 11/146 (7%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLN--NIDLLSFQRSRGH-KQMSLS-L 58
            L  LP     L  L       T +  +PS   +L      L S        +++S+S  
Sbjct: 92  QLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN 151

Query: 59  PITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGR 118
            +         L  L   +  +T LP        L+EL + +N    +P   ++   L +
Sbjct: 152 QLASLPALPSELCKLWAYNNQLTSLPMLPS---GLQELSVSDNQLASLPTLPSE---LYK 205

Query: 119 LSLRYCERLQSLSKLPCKLHELDAHH 144
           L      RL SL  LP  L EL    
Sbjct: 206 LWAYNN-RLTSLPALPSGLKELIVSG 230

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.6 bits (139), Expect = 1e-10
 Identities = 34/159 (21%), Positives = 54/159 (33%), Gaps = 37/159 (23%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITL 62
            L  LP     L+ L         +  +P+    L  +   + Q +        SLP+  
Sbjct: 132 QLTSLPVLPPGLQELSVSD---NQLASLPALPSELCKLWAYNNQLT--------SLPMLP 180

Query: 63  SLDGLHTLTYLNLTDCGITRLPENIGQL-----------------SSLEELDLQENNFER 105
           S      L  L+++D  +  LP    +L                 S L+EL +  N    
Sbjct: 181 S-----GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS 235

Query: 106 IPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHH 144
           +P   ++   L  L +    RL SL  LP  L  L  + 
Sbjct: 236 LPVLPSE---LKELMVSGN-RLTSLPMLPSGLLSLSVYR 270

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.8 bits (124), Expect = 9e-09
 Identities = 32/143 (22%), Positives = 49/143 (34%), Gaps = 23/143 (16%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITL 62
           +L  LP     L    +L   G  +  +P     L  + + S   +         LP   
Sbjct: 72  NLTSLPALPPELR---TLEVSGNQLTSLPVLPPGLLELSIFSNPLT--------HLPALP 120

Query: 63  SLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLR 122
           S      L  L +    +T LP        L+EL + +N    +P   ++   L +L   
Sbjct: 121 S-----GLCKLWIFGNQLTSLPVLPP---GLQELSVSDNQLASLPALPSE---LCKLWAY 169

Query: 123 YCERLQSLSKLPCKLHELDAHHC 145
              +L SL  LP  L EL     
Sbjct: 170 NN-QLTSLPMLPSGLQELSVSDN 191

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 8/148 (5%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVPSS--FFRLNNIDLLSFQRSRGH-KQMSLS-L 58
            L  LP     L  LW+ +   T++  +PS      ++   L S        K++ +S  
Sbjct: 192 QLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGN 251

Query: 59  PITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGR 118
            +T        L  L++    +TRLPE++  LSS   ++L+ N          +      
Sbjct: 252 RLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAP 311

Query: 119 LS----LRYCERLQSLSKLPCKLHELDA 142
                 +R+     S  +    LH   A
Sbjct: 312 GYSGPIIRFDMAGASAPRETRALHLAAA 339

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.8 bits (111), Expect = 5e-07
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 70  LTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQS 129
              LN+ + G+T LP+ +     +  L + +NN   +P    +   L  L +    +L S
Sbjct: 42  NAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPALPPE---LRTLEVSGN-QLTS 95

Query: 130 LSKLPCKLHELD 141
           L  LP  L EL 
Sbjct: 96  LPVLPPGLLELS 107

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 23/153 (15%), Positives = 45/153 (29%), Gaps = 12/153 (7%)

Query: 4   LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMS----LSLP 59
           L +LP  L  L  +  ++                  +             +      + P
Sbjct: 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321

Query: 60  ITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSK-LGR 118
           +  SL  +  L  L      +       G    L  L+L  N    IP +    ++ +  
Sbjct: 322 VETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381

Query: 119 LSLRYCERLQSLSKLPCKLHELDAHHCTALESL 151
           LS  +      L  +P   +  DA   + + ++
Sbjct: 382 LSFAHN----KLKYIP---NIFDAKSVSVMSAI 407

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 5e-09
 Identities = 20/124 (16%), Positives = 42/124 (33%), Gaps = 5/124 (4%)

Query: 3   HLQRLPDEL--GNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPI 60
            L +L D+     L  L  +     +  + P+     + +     +  R  +        
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558

Query: 61  TLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIP-ESITQRSKLGRL 119
              +    +LT L +    I ++ E I    ++  LD+++N    I    +    + G  
Sbjct: 559 PEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMY 616

Query: 120 SLRY 123
            L Y
Sbjct: 617 MLFY 620

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 16/159 (10%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVPSSFF-RLNNIDLLSFQRSRGHKQMSLSLPIT 61
            L+      G+   L SL+     I E+P++F      ++ LSF  ++        +P  
Sbjct: 341 QLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-----YIPNI 395

Query: 62  LSLDGLHTLTYLNL--------TDCGITRLPENIGQLSSLEELDLQENNFERIPESITQR 113
                +  ++ ++                L     +  ++  ++L  N   + P+ +   
Sbjct: 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455

Query: 114 -SKLGRLSLRYCERLQSLSKLPCKLHELDAHHCTALESL 151
            S L  ++L     L  + K   K    +  +   L S+
Sbjct: 456 GSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSI 493

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 15/147 (10%), Positives = 36/147 (24%), Gaps = 13/147 (8%)

Query: 7   LPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDG 66
           +            +  +   I  V  +  RL  +       S                  
Sbjct: 175 IKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNS------PFVAENICEAWE 228

Query: 67  LHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNF-ERIPESITQRSKLGRLSLRYCE 125
                Y                 L  L ++++       ++P  +    ++  +++    
Sbjct: 229 NENSEYAQQY----KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN- 283

Query: 126 RLQSLSKLPCKLHEL-DAHHCTALESL 151
           R  S  +L      L DA     ++ +
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQII 310

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.2 bits (110), Expect = 9e-07
 Identities = 18/161 (11%), Positives = 38/161 (23%), Gaps = 25/161 (15%)

Query: 1   IFHLQRLPDELGNLEALWSLHA-IGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLP 59
           +      P  +    +            +       R +  DL+    +           
Sbjct: 119 VNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSD----PQQKS 174

Query: 60  ITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNF---------------- 103
           I  S       T +      IT + + + +L+ L +  +  + F                
Sbjct: 175 IKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY 234

Query: 104 ----ERIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHEL 140
               +           L  + +  C  L  L      L E+
Sbjct: 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 22/140 (15%), Positives = 47/140 (33%), Gaps = 20/140 (14%)

Query: 8   PDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLS------LPIT 61
            +       L S++ +G  + E+P +  +  N    +F+ +     + L       L   
Sbjct: 450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDEN---ENFKNTYLLTSIDLRFNKLTKLSDD 506

Query: 62  LSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENN-------FERIPESITQRS 114
                L  L  ++L+    ++ P      S+L+   ++              PE IT   
Sbjct: 507 FRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566

Query: 115 KLGRLSLRYCERLQSLSKLP 134
            L +L +        + K+ 
Sbjct: 567 SLTQLQIGSN----DIRKVN 582

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 63  SLDGLHTLTYLNLTDCGIT-RLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSL 121
           SL+    +T L+L   G + R+P+ IGQL+ LE L L  +  + + E +     +     
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEK-VNERLFGPKGISANMS 134

Query: 122 RYCERLQSLSKLPCKLHELDAHHCTALESL 151
              ++   +      +        + L   
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKD 164

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.0 bits (136), Expect = 3e-10
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 10/122 (8%)

Query: 7   LPDELGNLEALWSLHAIGTAIR---EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLS 63
           L D       + +L   G  +     +PSS   L  ++ L           +L  PI  +
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI-----GGINNLVGPIPPA 96

Query: 64  LDGLHTLTYLNLTDCGIT-RLPENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSL 121
           +  L  L YL +T   ++  +P+ + Q+ +L  LD   N     +P SI+    L  ++ 
Sbjct: 97  IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156

Query: 122 RY 123
             
Sbjct: 157 DG 158

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.1 bits (105), Expect = 4e-06
 Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 20/125 (16%)

Query: 7   LPDELGNLEALWSL------HAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPI 60
           +PD  G+   L++          G    ++P +F  LN +  +   R+       L    
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTG----KIPPTFANLN-LAFVDLSRNM------LEGDA 213

Query: 61  TLSLDGLHTLTYLNLTDCGIT-RLPENIGQLSSLEELDLQENNFE-RIPESITQRSKLGR 118
           ++          ++L    +   L + +G   +L  LDL+ N     +P+ +TQ   L  
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272

Query: 119 LSLRY 123
           L++ +
Sbjct: 273 LNVSF 277

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 21/126 (16%), Positives = 47/126 (37%), Gaps = 27/126 (21%)

Query: 7   LPDELGNLEALWSLHAIGTAIR-EVPSSFFRLNNIDLLSFQR--------------SRGH 51
           +PD L  ++ L +L     A+   +P S   L N+  ++F                S+  
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176

Query: 52  KQMSLS-------LPITLSLDGLHTLTYLNLTDCGIT-RLPENIGQLSSLEELDLQENNF 103
             M++S       +P T        L +++L+   +        G   + +++ L +N+ 
Sbjct: 177 TSMTISRNRLTGKIPPTF---ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233

Query: 104 E-RIPE 108
              + +
Sbjct: 234 AFDLGK 239

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.0 bits (135), Expect = 4e-10
 Identities = 30/160 (18%), Positives = 53/160 (33%), Gaps = 24/160 (15%)

Query: 3   HLQRLPDELGNLEALWSLH----------AIGTAIREVPSSFFRLNNIDLLSFQRSRGHK 52
           ++ +LPD L +L  L SL+           +      +         I +       G+ 
Sbjct: 503 NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM----GYN 558

Query: 53  QMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQ 112
            +    P + SL  +  L  L+     +  L    G    L +L L  N  E IPE    
Sbjct: 559 NLE-EFPASASLQKMVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQIEEIPEDFCA 616

Query: 113 R-SKLGRLSLRYCERLQSLSKLPCKLHELDAHHCTALESL 151
              ++  L   +      L  +P   +  +A     + S+
Sbjct: 617 FTDQVEGLGFSHN----KLKYIP---NIFNAKSVYVMGSV 649

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.3 bits (133), Expect = 6e-10
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 12/130 (9%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITL 62
            +  +   +  L  L  ++   +       +    +     +                 L
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA----------KQYENEEL 485

Query: 63  SLDGLHTLTYLNLTDC-GITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSL 121
           S   L  LT + L +C  +T+LP+ +  L  L+ L++  N      +     ++L     
Sbjct: 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD-DE 544

Query: 122 RYCERLQSLS 131
               ++Q   
Sbjct: 545 DTGPKIQIFY 554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 2e-09
 Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 5/124 (4%)

Query: 3   HLQRLPDEL--GNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPI 60
            L  L D+     L  L ++          P+     + +     +  R  +   +    
Sbjct: 739 KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798

Query: 61  TLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPE-SITQRSKLGRL 119
              +    +L  L +    I ++ E +     L  LD+ +N    I   S+    + G  
Sbjct: 799 PTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMY 856

Query: 120 SLRY 123
            L Y
Sbjct: 857 VLLY 860

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.6 bits (121), Expect = 3e-08
 Identities = 21/157 (13%), Positives = 53/157 (33%), Gaps = 19/157 (12%)

Query: 3   HLQRLPDE-LGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLS---- 57
            +Q+ P E       + ++      +  +P +  +  +    +++ +     + L     
Sbjct: 684 EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD---GNYKNTYLLTTIDLRFNKL 740

Query: 58  --LPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNF-------ERIPE 108
             L        L  L+ ++++    +  P      S L+   ++            + P 
Sbjct: 741 TSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800

Query: 109 SITQRSKLGRLSLRYCERLQSL-SKLPCKLHELDAHH 144
            IT    L +L +     ++ +  KL  +L+ LD   
Sbjct: 801 GITTCPSLIQLQIGSN-DIRKVDEKLTPQLYILDIAD 836

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.5 bits (118), Expect = 7e-08
 Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 26/171 (15%)

Query: 6   RLPDELGNLEALWSL----HAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPIT 61
           R+PD +G L  L  L    H+   + R         +  +    +    +K+M L     
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397

Query: 62  L--------------SLDGLHTLTYLNLTDC-------GITRLPENIGQLSSLEELDLQE 100
           L               +  +   + ++L D         IT + + I +L+ L+ +    
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN 457

Query: 101 NNFERIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHCTALESL 151
           + F     ++         + +Y     S S L   L +++ ++C  +  L
Sbjct: 458 SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK-DLTDVELYNCPNMTQL 507

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 6e-06
 Identities = 17/152 (11%), Positives = 41/152 (26%), Gaps = 27/152 (17%)

Query: 1   IFHLQRLPDELGNLEALWSLHAIGTAIREVPSS--FFRLNNIDLL-----------SFQR 47
                RL D+      +   +     + E P+S    ++  + LL           +F  
Sbjct: 534 KADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGT 593

Query: 48  SRGHKQMSLS------LPITLSLDGLHTLTYLNLTDCGITRLPE--NIGQLSSLEELDLQ 99
           +     + L       +P          +  L  +   +  +P   N   +  +  +D  
Sbjct: 594 NVKLTDLKLDYNQIEEIPEDF-CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFS 652

Query: 100 ENNFERIPESITQRSKLGRLSLRYCERLQSLS 131
            N       +I        +         +++
Sbjct: 653 YNKIGSEGRNI-----SCSMDDYKGINASTVT 679

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 7e-06
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 63  SLDGLHTLTYLNLTDCGIT-RLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSL 121
            LD    +T L+L   G   R+P+ IGQL+ L+ L    ++                +S 
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.4 bits (128), Expect = 3e-09
 Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 20/124 (16%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITL 62
            L  LP+    LE    ++A    +  +P     L  + + +               +T 
Sbjct: 131 QLTMLPELPALLE---YINADNNQLTMLPELPTSLEVLSVRN-------------NQLTF 174

Query: 63  SLDGLHTLTYLNLTDCGITRLPENIGQLSSLEE----LDLQENNFERIPESITQRSKLGR 118
             +   +L  L+++   +  LP    +    EE       +EN    IPE+I        
Sbjct: 175 LPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCT 234

Query: 119 LSLR 122
           + L 
Sbjct: 235 IILE 238

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.1 bits (122), Expect = 2e-08
 Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 22/142 (15%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITL 62
           +L  LPD L     +  L     A+  +P     L  +D    + S        +LP   
Sbjct: 70  NLSSLPDNLPPQ--ITVLEITQNALISLPELPASLEYLDACDNRLS--------TLP--- 116

Query: 63  SLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLR 122
             +   +L +L++ +  +T LPE    L   E ++   N    +PE  T    L  LS+R
Sbjct: 117 --ELPASLKHLDVDNNQLTMLPELPALL---EYINADNNQLTMLPELPTS---LEVLSVR 168

Query: 123 YCERLQSLSKLPCKLHELDAHH 144
              +L  L +LP  L  LD   
Sbjct: 169 NN-QLTFLPELPESLEALDVST 189

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 23/138 (16%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITL 62
            L  LP+   +LE    L A    +  +P     L ++D+ + Q +         LP   
Sbjct: 91  ALISLPELPASLE---YLDACDNRLSTLPELPASLKHLDVDNNQLT--------MLP--- 136

Query: 63  SLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLR 122
             +    L Y+N  +  +T LPE     +SLE L ++ N    +PE       L  L + 
Sbjct: 137 --ELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPELPES---LEALDVS 188

Query: 123 YCERLQSLSKLPCKLHEL 140
               L+SL  +P + H  
Sbjct: 189 TN-LLESLPAVPVRNHHS 205

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 9/105 (8%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITL 62
            L  LP+   +LE    L      +  +P     L  +D+ +          SL      
Sbjct: 151 QLTMLPELPTSLE---VLSVRNNQLTFLPELPESLEALDVSTNLLE------SLPAVPVR 201

Query: 63  SLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIP 107
           +     T  +    +  IT +PENI  L     + L++N      
Sbjct: 202 NHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRI 246

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 31/149 (20%), Positives = 56/149 (37%), Gaps = 17/149 (11%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSR------GHKQMSL 56
            L+ LPD   +LE   +L+     + ++P     L  +D+     S           ++ 
Sbjct: 248 LLKTLPDLPPSLE---ALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 304

Query: 57  S-LPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSK 115
           S   I    D   +L  LN+++  +  LP        LE L    N+   +PE       
Sbjct: 305 SSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPELPQ---N 358

Query: 116 LGRLSLRYCERLQSLSKLPCKLHELDAHH 144
           L +L + Y   L+    +P  + +L  + 
Sbjct: 359 LKQLHVEYN-PLREFPDIPESVEDLRMNS 386

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.2 bits (118), Expect = 8e-08
 Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 13/150 (8%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRL----NNI-DLLSFQRSRGHKQMSLS 57
            L  LP+   +L++L   +    A+ ++P     L    N +  L   Q S   K + + 
Sbjct: 102 SLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVD 161

Query: 58  L-PITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKL 116
              +    D   +L ++   +  +  LPE +  L  L  +    N+ +++P+       L
Sbjct: 162 NNSLKKLPDLPPSLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDLPLS---L 217

Query: 117 GRLSLRYC--ERLQSLSKLPCKLHELDAHH 144
             +       E L  L  LP  L  + A +
Sbjct: 218 ESIVAGNNILEELPELQNLP-FLTTIYADN 246

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 26/163 (15%), Positives = 50/163 (30%), Gaps = 21/163 (12%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAI-REVPSSFFRLNNIDLLSFQRSRGHKQMSLSL--- 58
           +L  +P E  N+++    +   +   R  P        + +   +     +   L L   
Sbjct: 22  NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL 81

Query: 59  PITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPES--------- 109
            ++   +    L  L  +   +T LPE    L SL   +        +P           
Sbjct: 82  GLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN 141

Query: 110 -------ITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHC 145
                  +   S L  + +     L+ L  LP  L  + A + 
Sbjct: 142 QLEKLPELQNSSFLKIIDVDNN-SLKKLPDLPPSLEFIAAGNN 183

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 35/166 (21%), Positives = 63/166 (37%), Gaps = 25/166 (15%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITL 62
            L+ LP EL NL  L +++A   +++++P     L +I   +       +  +L    T+
Sbjct: 184 QLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 242

Query: 63  SLDG---------LHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESIT-- 111
             D            +L  LN+ D  +T LPE    L+ L+  +   +    +P ++   
Sbjct: 243 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 302

Query: 112 ------------QRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHC 145
                           L  L++    +L  L  LP +L  L A   
Sbjct: 303 NASSNEIRSLCDLPPSLEELNVSNN-KLIELPALPPRLERLIASFN 347

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.1 bits (119), Expect = 4e-08
 Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 18/140 (12%)

Query: 11  LGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITL--SLDGLH 68
           L NL+ L  L      I+++ SS   L  +  LS + +           I+    L  L 
Sbjct: 83  LTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNG----------ISDINGLVHLP 131

Query: 69  TLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYC--ER 126
            L  L L +  IT +   + +L+ L+ L L++N    I   +   +KL  L L       
Sbjct: 132 QLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISD 189

Query: 127 LQSLSKLPCKLHELDAHHCT 146
           L++L+ L   L  L+     
Sbjct: 190 LRALAGLK-NLDVLELFSQE 208

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.7 bits (118), Expect = 5e-08
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 7/93 (7%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLR 122
           + + L+++  +   +  I  + + I  L ++ +L L  N    I + +T    LG L L 
Sbjct: 38  TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLD 95

Query: 123 YC--ERLQSLSKLPCKLHELDAHHC--TALESL 151
               + L SL  L  KL  L   H   + +  L
Sbjct: 96  ENKIKDLSSLKDLK-KLKSLSLEHNGISDINGL 127

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.6 bits (102), Expect = 7e-06
 Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 64  LDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRY 123
            D        NL    +T       +L+S++++    ++ + + + I     + +L L  
Sbjct: 17  DDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNG 74

Query: 124 C--ERLQSLSKLPCKLHELDAHHC 145
                ++ L+ L   L  L     
Sbjct: 75  NKLTDIKPLTNLK-NLGWLFLDEN 97

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.8 bits (119), Expect = 5e-08
 Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 9/96 (9%)

Query: 57  SLPITLSLDGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERIPESITQR-S 114
            L    +   L  L  L L+   +  +       + +L  LDL  N+   + E +     
Sbjct: 53  RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ 112

Query: 115 KLGRLSLRYCERLQSL-----SKLPCKLHELDAHHC 145
            L  L L     +  +       +  +L +L     
Sbjct: 113 ALEVLLLYNN-HIVVVDRNAFEDMA-QLQKLYLSQN 146

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPE----NIGQLSSLEELDLQENNFERIP-ESITQRSKLG 117
           + + +  L  L L+   I+R P     +  +L  L  LDL  N  +++P   + +     
Sbjct: 131 AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190

Query: 118 RLSLR 122
           +  L 
Sbjct: 191 KNGLY 195

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.2 bits (118), Expect = 6e-08
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 65  DGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERIPESI-TQRSKLGRLSLR 122
             L  L  L +TD  +  LP  +  QL +L EL L  N  + +P  +    +KL  LSL 
Sbjct: 82  KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141

Query: 123 YCERLQSLS 131
           Y   LQSL 
Sbjct: 142 YN-ELQSLP 149

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 16/126 (12%)

Query: 3   HLQRLP----DELGNLEALWSLHAIGTAIREVPSSFF-RLNNIDLLSFQRSRGHKQMSLS 57
            LQ LP     EL NLE LW +      ++ +P   F +L N+  L   R     Q+  S
Sbjct: 72  KLQTLPAGIFKELKNLETLW-VT--DNKLQALPIGVFDQLVNLAELRLDR----NQLK-S 123

Query: 58  LPITLSLDGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERIPESI-TQRSK 115
           LP  +  D L  LTYL+L    +  LP+ +  +L+SL+EL L  N  +R+PE    + ++
Sbjct: 124 LPPRV-FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182

Query: 116 LGRLSL 121
           L  L L
Sbjct: 183 LKTLKL 188

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 8/122 (6%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVPSSFF-RLNNIDLLSFQRSRGHKQMSLSLPIT 61
            LQ LP     L AL  L      +  +P      L  +  L  +      ++  +LP  
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK----GNELK-TLPPG 142

Query: 62  LSLDGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERIPESITQRSKLGRLS 120
           L L     L  L+L +  +T LP  +   L +L+ L LQEN+   IP+       L    
Sbjct: 143 L-LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF 201

Query: 121 LR 122
           L 
Sbjct: 202 LH 203

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 65  DGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESI-TQRSKLGRLSLRY 123
             L  L  L+L+   +  LP     L +L  LD+  N    +P        +L  L L+ 
Sbjct: 74  GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133

Query: 124 CERLQSL 130
              L++L
Sbjct: 134 N-ELKTL 139

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 9/119 (7%)

Query: 7   LPDELGNLEALWSLHAIGTAIR-EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLD 65
           +P  L N   L SLH     +   +PSS   L+ +  L    +       L   I   L 
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM------LEGEIPQELM 463

Query: 66  GLHTLTYLNLTDCGIT-RLPENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSLR 122
            + TL  L L    +T  +P  +   ++L  + L  N     IP+ I +   L  L L 
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.8 bits (112), Expect = 6e-07
 Identities = 34/149 (22%), Positives = 51/149 (34%), Gaps = 19/149 (12%)

Query: 7   LPDELGNLEALWSLHAIGTAIR-EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLD 65
               +     L  L+         +P     L ++  LS   +        +  I   L 
Sbjct: 239 FSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAEN------KFTGEIPDFLS 290

Query: 66  G-LHTLTYLNLTDCGIT-RLPENIGQLSSLEELDLQENNFE-RIP-ESITQRSKLGRLSL 121
           G   TLT L+L+       +P   G  S LE L L  NNF   +P +++ +   L  L L
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350

Query: 122 RYCERLQ-----SLSKLPCKLHELDAHHC 145
            +          SL+ L   L  LD    
Sbjct: 351 SFN-EFSGELPESLTNLSASLLTLDLSSN 378

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.4 bits (111), Expect = 7e-07
 Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 7/120 (5%)

Query: 4   LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLS 63
              +   L +L  L SL    + I    S F    ++  L   R+     +S  +    S
Sbjct: 66  FSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRN----SLSGPVTTLTS 121

Query: 64  LDGLHTLTYLNLTDCGITRL--PENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLS 120
           L     L +LN++   +          +L+SLE LDL  N+               G L 
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 181

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 9e-07
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 9/113 (7%)

Query: 7   LPDELGNLEALWSLHAIGTAIR-EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLD 65
           +P EL  ++ L +L      +  E+PS      N++ +S   +R      L+  I   + 
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR------LTGEIPKWIG 511

Query: 66  GLHTLTYLNLTDCGIT-RLPENIGQLSSLEELDLQENNFE-RIPESITQRSKL 116
            L  L  L L++   +  +P  +G   SL  LDL  N F   IP ++ ++S  
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 9e-06
 Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 8/122 (6%)

Query: 6   RLPDELGNLEA-LWSLHAIGTAIR-EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLS 63
            LP+ L NL A L +L          +  +  +     L              +  I  +
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN----GFTGKIPPT 413

Query: 64  LDGLHTLTYLNLTDCGIT-RLPENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSL 121
           L     L  L+L+   ++  +P ++G LS L +L L  N  E  IP+ +     L  L L
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473

Query: 122 RY 123
            +
Sbjct: 474 DF 475

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 63  SLDGLHTLTYLNLTDCGIT-RLPENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLS 120
            L     L +L+++   ++      I   + L+ L++  N F   IP        L  LS
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL--KSLQYLS 275

Query: 121 LRYC 124
           L   
Sbjct: 276 LAEN 279

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 9/121 (7%)

Query: 6   RLPDELGNLEALWSLHAIGTAIR-EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSL 64
              ++L  L      +            +F    ++  L    +       LS  I   +
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM------LSGYIPKEI 652

Query: 65  DGLHTLTYLNLTDCGIT-RLPENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSLR 122
             +  L  LNL    I+  +P+ +G L  L  LDL  N  + RIP++++  + L  + L 
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712

Query: 123 Y 123
            
Sbjct: 713 N 713

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 59  PITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFE-RIPE--SITQRSK 115
            ++ SL  L  L  L L++  I          +SL  LDL  N+    +    S+   S 
Sbjct: 68  AVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127

Query: 116 LGRLSLRYC 124
           L  L++   
Sbjct: 128 LKFLNVSSN 136

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 9/57 (15%), Positives = 20/57 (35%)

Query: 67  LHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRY 123
              L  L+L+   +  +       + +  + L+ N    I +++     L    LR 
Sbjct: 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 38/153 (24%), Positives = 57/153 (37%), Gaps = 22/153 (14%)

Query: 3   HLQRLPDE-LGNLEALWSLHAIGTAIREVPSSFF----RLNNIDLLSFQRSRGHKQMSLS 57
            L  +P      L  L  L      I  +PS  F     L  +DL   ++          
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-------Y 186

Query: 58  LPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQR-SKL 116
           +    + +GL  L YLNL  C I  +P  +  L  LEEL++  N+F  I        S L
Sbjct: 187 ISEG-AFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSL 244

Query: 117 GRLSLRYCERLQSL-----SKLPCKLHELDAHH 144
            +L +    ++  +       L   L EL+  H
Sbjct: 245 KKLWVMNS-QVSLIERNAFDGLA-SLVELNLAH 275

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 10/123 (8%)

Query: 3   HLQRLPDE-LGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPIT 61
            L+ + +     L  L  L+     I+++P+    L  ++ L    +             
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNH------FPEIRP 235

Query: 62  LSLDGLHTLTYLNLTDCGITRLPEN-IGQLSSLEELDLQENNFERIPESI-TQRSKLGRL 119
            S  GL +L  L + +  ++ +  N    L+SL EL+L  NN   +P  + T    L  L
Sbjct: 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295

Query: 120 SLR 122
            L 
Sbjct: 296 HLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 9e-06
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERIPESITQR-SKLGRLS 120
           + +GL +L  L L D  +T +P      LS L EL L+ N  E IP     R   L RL 
Sbjct: 118 AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177

Query: 121 LRYCERLQSLS 131
           L   ++L+ +S
Sbjct: 178 LGELKKLEYIS 188

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.8 bits (113), Expect = 2e-07
 Identities = 31/148 (20%), Positives = 55/148 (37%), Gaps = 10/148 (6%)

Query: 1   IFHLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPI 60
           +  L    + L     L ++  +  A  +   S F L N  L           ++    +
Sbjct: 395 LDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA-HKDL 453

Query: 61  TL--SLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGR 118
           T+   L+ L  +T+L+L+   +  LP  +  L  LE L   +N  E +   +    +L  
Sbjct: 454 TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQE 512

Query: 119 LSLRY-----CERLQSLSKLPCKLHELD 141
           L L          +Q L   P +L  L+
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCP-RLVLLN 539

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 38/153 (24%), Positives = 58/153 (37%), Gaps = 22/153 (14%)

Query: 3   HLQRLPDE-LGNLEALWSLHAIGTAIREVPSSFF----RLNNIDLLSFQRSRGHKQMSLS 57
            L  +P+     L  L  L      I  +PS  F     L  +DL   +R          
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-------Y 175

Query: 58  LPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQR-SKL 116
           +    + +GL  L YLNL  C +  +P  +  L  L+ELDL  N+   I     Q    L
Sbjct: 176 ISEG-AFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233

Query: 117 GRLSLRYCERLQSL-----SKLPCKLHELDAHH 144
            +L +    ++Q +       L   L E++  H
Sbjct: 234 QKLWMIQS-QIQVIERNAFDNLQ-SLVEINLAH 264

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 31/123 (25%), Positives = 46/123 (37%), Gaps = 10/123 (8%)

Query: 3   HLQRLPDE-LGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPIT 61
            L  + +     L  L  L+     +RE+P+    L  +D L    +       LS    
Sbjct: 172 RLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNH------LSAIRP 224

Query: 62  LSLDGLHTLTYLNLTDCGITRLPEN-IGQLSSLEELDLQENNFERIPESI-TQRSKLGRL 119
            S  GL  L  L +    I  +  N    L SL E++L  NN   +P  + T    L R+
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284

Query: 120 SLR 122
            L 
Sbjct: 285 HLH 287

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 8/127 (6%)

Query: 1   IFHLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPI 60
           +              +L  L      +  + S+F  L  ++ L FQ S   +    S+  
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV-- 416

Query: 61  TLSLDGLHTLTYLNLTDCGITRL-PENIGQLSSLEELDLQENNFER--IPESITQRSKLG 117
                 L  L YL+++              LSSLE L +  N+F+   +P+  T+   L 
Sbjct: 417 ---FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 118 RLSLRYC 124
            L L  C
Sbjct: 474 FLDLSQC 480

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 31  PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQL 90
             S   L +++ L   R+     +S     + S  G  +L YL+L+  G+  +  N   L
Sbjct: 340 AFSEVDLPSLEFLDLSRN----GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

Query: 91  SSLEELDLQENNFERI--PESITQRSKLGRLSLRYC 124
             LE LD Q +N +++           L  L + + 
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 27/122 (22%), Positives = 39/122 (31%), Gaps = 14/122 (11%)

Query: 31  PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPEN-IGQ 89
             SFF    + +L   R        +      +   L  L+ L LT   I  L       
Sbjct: 45  SYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 90  LSSLEELDLQENNFER-IPESITQRSKLGRLSLRYC-----ERLQSLSKLPCKLHELDAH 143
           LSSL++L   E N        I     L  L++ +      +  +  S L   L  LD  
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLS 157

Query: 144 HC 145
             
Sbjct: 158 SN 159

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 9/105 (8%)

Query: 8   PDELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDG 66
                +L  L +L   G  I+ +   +F  L+++  L    +      +L+      +  
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET------NLASLENFPIGH 122

Query: 67  LHTLTYLNLTDCGITRL--PENIGQLSSLEELDLQENNFERIPES 109
           L TL  LN+    I     PE    L++LE LDL  N  + I  +
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 5/115 (4%)

Query: 31  PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLT----DCGITRLPEN 86
            +    L  +++          + +L      +L+GL  LT         D  +  + + 
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277

Query: 87  IGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELD 141
              L+++    L     ER+    +       L L  C+  Q  +     L  L 
Sbjct: 278 FNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 331

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 31/157 (19%), Positives = 56/157 (35%), Gaps = 16/157 (10%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVPSSFF-RLNNIDLLSFQRSRGHKQMSLSLPIT 61
            L  +P  +    +   L      ++ +P   F +L  +  LS   +     +S     +
Sbjct: 18  GLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN----GLSFKGCCS 71

Query: 62  LSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPES--ITQRSKLGRL 119
            S  G  +L YL+L+  G+  +  N   L  LE LD Q +N +++ E         L  L
Sbjct: 72  QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 131

Query: 120 SLRYCERLQSLSK-----LPCKLHELDAHHCTALESL 151
            + +    +         L   L  L     +  E+ 
Sbjct: 132 DISHT-HTRVAFNGIFNGLS-SLEVLKMAGNSFQENF 166

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 12/135 (8%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVPSS--FFRLNNIDLLSFQRSRGHKQMSLSLPI 60
            +  +      LE L  L    + ++++     F  L N+  L    +         +  
Sbjct: 89  GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH------TRVAF 142

Query: 61  TLSLDGLHTLTYLNLTDC-GITRLPENI-GQLSSLEELDLQENNFERIPESITQR-SKLG 117
               +GL +L  L +           +I  +L +L  LDL +   E++  +     S L 
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202

Query: 118 RLSLRYCERLQSLSK 132
            L++ +     SL  
Sbjct: 203 VLNMSHN-NFFSLDT 216

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 25/145 (17%)

Query: 3   HLQRLPDE--LGNLEALWSLHAIGTAIREVPSSFFR-LNNIDLLSFQRSRGHKQMSLSLP 59
           +L+++ +     +L  L  L    T  R   +  F  L+++++L    +   +     + 
Sbjct: 112 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171

Query: 60  ITLS-------------------LDGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQ 99
             L                     + L +L  LN++      L       L+SL+ LD  
Sbjct: 172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231

Query: 100 ENNFERIPESITQR--SKLGRLSLR 122
            N+     +   Q   S L  L+L 
Sbjct: 232 LNHIMTSKKQELQHFPSSLAFLNLT 256

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 8e-07
 Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 12/138 (8%)

Query: 1   IFHLQRLPDELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLP 59
           I        +L NL  L SL+        + + +F     ++LL    +R          
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK-----VKD 416

Query: 60  ITLSLDGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERI----PESITQRS 114
                  LH L  LNL+   +    E +   L +L+ L+LQ N+F +       S+    
Sbjct: 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG 476

Query: 115 KLGRLSLRYCERLQSLSK 132
           +L  L L +C  L S+ +
Sbjct: 477 RLEILVLSFC-DLSSIDQ 493

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 12/127 (9%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFR-LNNIDLLSFQRSRGHKQMSLSLPIT 61
           HL  LP  L  L  L  L         +         ++  LS +        +  L + 
Sbjct: 289 HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG------NTKRLELG 342

Query: 62  L-SLDGLHTLTYLNLTDCGITRLPENIGQ---LSSLEELDLQENNFERI-PESITQRSKL 116
              L+ L  L  L+L+   I        Q   LS L+ L+L  N    +  E+  +  +L
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402

Query: 117 GRLSLRY 123
             L L +
Sbjct: 403 ELLDLAF 409

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSL 121
           +      L  L+LT   ++ LP  +  LS+L++L L  N FE + + S +    L  LS+
Sbjct: 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332

Query: 122 RYCERLQSLS 131
           +   +   L 
Sbjct: 333 KGNTKRLELG 342

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 27/139 (19%), Positives = 47/139 (33%), Gaps = 11/139 (7%)

Query: 8   PDELGNLEAL--WSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLD 65
            +++ +L+     SL+  G  I  +    F       L+F  +    Q  L +   L   
Sbjct: 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT----QNLLVIFKGLKNS 225

Query: 66  GLHTLTYLNLTDCGITRLPENI---GQLSSLEELDLQENNFERI-PESITQRSKLGRLSL 121
            + +L      D     +   +       S+E ++LQ++ F  I   +    S L  L L
Sbjct: 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285

Query: 122 RYCERLQSLSKLPCKLHEL 140
                L  L      L  L
Sbjct: 286 TAT-HLSELPSGLVGLSTL 303

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 61  TLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLS 120
           T+S   L  +T L     GI  + + +  L++L +++   N    I   +   +KL  + 
Sbjct: 39  TVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDIL 96

Query: 121 LRYCE--RLQSLSKLPCKLHELDAHHC 145
           +   +   +  L+ L   L  L   + 
Sbjct: 97  MNNNQIADITPLANLT-NLTGLTLFNN 122

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 15/139 (10%)

Query: 9   DELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLH 68
           D L NL  L  L      I ++ +    L ++  LSF    G++   L       L  L 
Sbjct: 128 DPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSF----GNQVTDLK-----PLANLT 177

Query: 69  TLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYC--ER 126
           TL  L+++   ++ +   + +L++LE L    N    I   +   + L  LSL     + 
Sbjct: 178 TLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD 235

Query: 127 LQSLSKLPCKLHELDAHHC 145
           + +L+ L   L +LD  + 
Sbjct: 236 IGTLASLT-NLTDLDLANN 253

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.4 bits (103), Expect = 8e-06
 Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 14/138 (10%)

Query: 9   DELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLH 68
             LG L  L  L   G  ++++ +    L N+  L       + Q+S +L     L GL 
Sbjct: 215 TPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDL----ANNQIS-NLA---PLSGLT 265

Query: 69  TLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYC--ER 126
            LT L L    I+ +   +  L++L  L+L EN  E I   I+    L  L+L +     
Sbjct: 266 KLTELKLGANQISNIS-PLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISD 323

Query: 127 LQSLSKLPCKLHELDAHH 144
           +  +S L  KL  L  ++
Sbjct: 324 ISPVSSLT-KLQRLFFYN 340

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 3/76 (3%)

Query: 57  SLPITLSLDGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERIPESITQR-S 114
            L  T     L  L  +N ++  IT + E      S + E+ L  N  E +   + +   
Sbjct: 46  VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE 105

Query: 115 KLGRLSLRYCERLQSL 130
            L  L LR   R+  +
Sbjct: 106 SLKTLMLRSN-RITCV 120

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 64  LDGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERIPESITQR-SKLGRLSL 121
             GL +L  L L    IT +  +    LSS+  L L +N    +          L  L+L
Sbjct: 101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 22/137 (16%), Positives = 48/137 (35%), Gaps = 11/137 (8%)

Query: 11  LGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTL 70
           +     +  L           +    L+N++ L            ++     +L GL +L
Sbjct: 62  IEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKD------VTSDKIPNLSGLTSL 114

Query: 71  TYLNLTDCGIT-RLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCE--RL 127
           T L+++       +   I  L  +  +DL  N        +    +L  L++++      
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY 174

Query: 128 QSLSKLPCKLHELDAHH 144
           + +   P KL++L A  
Sbjct: 175 RGIEDFP-KLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 7/88 (7%)

Query: 62  LSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSL 121
           ++   +++LTY+ L +  +T L   I    ++++L +   +       I+  S L RL +
Sbjct: 38  ITEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRI 95

Query: 122 RYC----ERLQSLSKLPCKLHELDAHHC 145
                  +++ +LS L   L  LD  H 
Sbjct: 96  MGKDVTSDKIPNLSGLT-SLTLLDISHS 122

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 4/84 (4%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLR 122
            L  L  +  LNL           +  ++ L  L + E+  + +   I   + L  LSL 
Sbjct: 127 PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLN 185

Query: 123 YC--ERLQSLSKLPCKLHELDAHH 144
           Y   E +  L+ L   LH   A+ 
Sbjct: 186 YNQIEDISPLASLT-SLHYFTAYV 208

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.7 bits (104), Expect = 5e-06
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLR 122
           + + L ++T L +    +  +   I  L++LE L+L  N    I   ++   KL  L + 
Sbjct: 39  TQEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIG 96

Query: 123 YC--ERLQSLSKLPCKLHELDAHH 144
                 + +L  L   L EL  + 
Sbjct: 97  TNKITDISALQNLT-NLRELYLNE 119

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 26/139 (18%), Positives = 54/139 (38%), Gaps = 14/139 (10%)

Query: 9   DELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLH 68
             + NL  L+SL      I ++ S    L ++   +   ++        +     +  + 
Sbjct: 171 TPIANLTDLYSLSLNYNQIEDI-SPLASLTSLHYFTAYVNQ--------ITDITPVANMT 221

Query: 69  TLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYC--ER 126
            L  L + +  IT L   +  LS L  L++  N    I  ++   +KL  L++       
Sbjct: 222 RLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISD 279

Query: 127 LQSLSKLPCKLHELDAHHC 145
           +  L+ L  +L+ L  ++ 
Sbjct: 280 ISVLNNLS-QLNSLFLNNN 297

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 9/57 (15%), Positives = 20/57 (35%)

Query: 67  LHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRY 123
              L  L+L+   +  +       + +  + L+ N    I +++     L    LR 
Sbjct: 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 5/124 (4%)

Query: 3   HLQRLPDE-LGNLEALWSLHAIGTAIREVPSSFF-RLNNIDLLSFQRSRGHKQMSLSLP- 59
            LQ    + L +++ +  L         +   F    ++++ L  + +         L  
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244

Query: 60  -ITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQR-SKLG 117
             T SL    T   + +TD  + ++ + + Q+S L EL+   N  + +P+ I  R + L 
Sbjct: 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQ 304

Query: 118 RLSL 121
           ++ L
Sbjct: 305 KIWL 308

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.9 bits (96), Expect = 5e-05
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERIPESITQR--SKLGRL 119
           S   L +L +L+L+   ++ L  +    LSSL  L+L  N ++ + E+      +KL  L
Sbjct: 95  SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154

Query: 120 SLRYCERLQSLS 131
            +   +    + 
Sbjct: 155 RVGNMDTFTKIQ 166

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 6/124 (4%)

Query: 3   HLQRLPDEL-GNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPIT 61
           +L  L       L +L  L+ +G   + +  +    +   L   +         +     
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD- 169

Query: 62  LSLDGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERIPESITQR-SKLGRL 119
               GL  L  L +    +          + ++  L L       + E      S +  L
Sbjct: 170 --FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 120 SLRY 123
            LR 
Sbjct: 228 ELRD 231

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 25/95 (26%), Positives = 35/95 (36%), Gaps = 8/95 (8%)

Query: 64  LDGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERIPESITQR-SKLGRLSL 121
           L     L  L LT  GI  + E+    L SLE LDL  N    +  S  +  S L  L+L
Sbjct: 72  LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131

Query: 122 RYCERLQSLSKLPC-----KLHELDAHHCTALESL 151
                 ++L +        KL  L   +      +
Sbjct: 132 LGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 9/108 (8%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPIT 61
            L  +P +L   E L  LH     I+ +      R + +  L    ++      + +   
Sbjct: 183 KLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ------IRMIEN 234

Query: 62  LSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPES 109
            SL  L TL  L+L +  ++R+P  +  L  L+ + L  NN  ++  +
Sbjct: 235 GSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVN 282

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 1/62 (1%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERIPESITQRSKLGRLSL 121
            L     L  L L    I  +       L +L EL L  N   R+P  +     L  + L
Sbjct: 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYL 271

Query: 122 RY 123
             
Sbjct: 272 HT 273

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQR-SKLGRLSL 121
           +   L  L  L ++   +  +P N+   SSL EL + +N   ++P+ +      +  + +
Sbjct: 97  AFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154

Query: 122 RY 123
             
Sbjct: 155 GG 156

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 53  QMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESIT- 111
            +S     + S  G  +L YL+L+  G+  +  N   L  LE LD Q +N +++ E    
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 112 -QRSKLGRLSLRYCERLQSLSK 132
                L  L + +    +    
Sbjct: 418 LSLRNLIYLDISHT-HTRVAFN 438

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 22/145 (15%)

Query: 1   IFHLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHK-------- 52
           +              +L  L      +  + S+F  L  ++ L FQ S   +        
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 53  -----------QMSLSLPITLSLDGLHTLTYLNLTDCGITR--LPENIGQLSSLEELDLQ 99
                           +      +GL +L  L +         LP+   +L +L  LDL 
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 100 ENNFERIPESITQR-SKLGRLSLRY 123
           +   E++  +     S L  L++  
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMAS 503

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPEN-IGQLSSLEELDLQENNFERIPESITQR-SKLGRLS 120
           S      L  L+L+ C I  + +     LS L  L L  N  + +        S L +L 
Sbjct: 47  SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106

Query: 121 LRYCERLQSLSKLP 134
                 L SL   P
Sbjct: 107 AVET-NLASLENFP 119

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 10/111 (9%)

Query: 3   HLQRLPDE-LGNLEALWSLHAIGTAIREVPSSFFR-LNNIDLLSFQRSRGHKQMSLSLPI 60
            +Q + D    +L  L +L   G  I+ +    F  L+++  L    +       L+   
Sbjct: 63  EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN------LASLE 116

Query: 61  TLSLDGLHTLTYLNLTDCGITRL--PENIGQLSSLEELDLQENNFERIPES 109
              +  L TL  LN+    I     PE    L++LE LDL  N  + I  +
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 9/108 (8%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVPSSFF-RLNNIDLLSFQRSRGHKQMSLSLPIT 61
           ++  +P  L    +L  LH  G  I +V ++    LNN+  L    +       +S    
Sbjct: 182 NITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS------ISAVDN 233

Query: 62  LSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPES 109
            SL     L  L+L +  + ++P  +     ++ + L  NN   I  +
Sbjct: 234 GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN 281

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERIPESITQRSKLGRLSL 121
           SL GL+ L  L L+   I+ +          L EL L  N   ++P  +     +  + L
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 270

Query: 122 RY 123
             
Sbjct: 271 HN 272

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQR-SKLGRLSL 121
           +   L  L  L L+   +  LPE +    +L+EL + EN   ++ +S+    +++  + L
Sbjct: 95  AFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152

Query: 122 RY 123
             
Sbjct: 153 GT 154

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 32/124 (25%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 3   HLQRLPDE-LGNLEALWSLHAIGTAIREVPSSFFR-LNNIDLLSFQRSRGHKQMSLSLPI 60
            LQ L       L AL  L+    A++ +P   FR L N+  L    +R      +S   
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR------ISSVP 169

Query: 61  TLSLDGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERIPESITQR-SKLGR 118
             +  GLH+L  L L    +  +  +    L  L  L L  NN   +P         L  
Sbjct: 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229

Query: 119 LSLR 122
           L L 
Sbjct: 230 LRLN 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 8/119 (6%)

Query: 8   PDELGNLEALWSLHAIGTAIREVPSSFFR-LNNIDLLSFQRSRGHKQMSLSLPITLSLDG 66
                    L  L      +  + ++ F  L  ++ L    +    Q+  S+    +  G
Sbjct: 49  AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA---QLR-SVDPA-TFHG 103

Query: 67  LHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERIPESITQR-SKLGRLSLRY 123
           L  L  L+L  CG+  L   +   L++L+ L LQ+N  + +P+   +    L  L L  
Sbjct: 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 3/83 (3%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLR 122
            L  L  LT L+++      +P++      +  L+L       +   I Q   L  L + 
Sbjct: 382 ILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ--TLEVLDVS 439

Query: 123 YCERLQSLSKLPCKLHELDAHHC 145
               L S S    +L EL     
Sbjct: 440 NN-NLDSFSLFLPRLQELYISRN 461

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 15/109 (13%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVPSSFF-RLNNIDLLSFQRSRGHKQMSLSLPIT 61
               +PD     E +  L+   T IR V +     L  +D+ +               + 
Sbjct: 398 TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNN-------------LD 444

Query: 62  LSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESI 110
                L  L  L ++   +  LP+       L  + +  N  + +P+ I
Sbjct: 445 SFSLFLPRLQELYISRNKLKTLPDA-SLFPVLLVMKISRNQLKSVPDGI 492

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPEN-IGQLSSLEELDLQENNFERIPES--ITQRSKLGRL 119
           +   L +L +L+L+D  ++ L  +  G LSSL+ L+L  N ++ +  +      + L  L
Sbjct: 69  AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128

Query: 120 SLRYCERLQSLSK 132
            +   E    + +
Sbjct: 129 RIGNVETFSEIRR 141

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLR 122
           +   L  +T L+    G+T + E +  L++L  L+L++N    +   +   +K+  L L 
Sbjct: 36  TQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELS 93

Query: 123 YCE--RLQSLSKLPCKLHELDAHH 144
                 + +++ L   +  LD   
Sbjct: 94  GNPLKNVSAIAGLQ-SIKTLDLTS 116

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 30/154 (19%), Positives = 52/154 (33%), Gaps = 20/154 (12%)

Query: 9   DELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITL------ 62
             L NL  +  L   G  ++ V S+   L +I  L    ++      L+    L      
Sbjct: 79  APLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD 137

Query: 63  --------SLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRS 114
                    L GL  L YL++ +  ++ L   +  LS L  L   +N    I   +    
Sbjct: 138 LNQITNISPLAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISDIS-PLASLP 195

Query: 115 KLGRLSLRYC--ERLQSLSKLPCKLHELDAHHCT 146
            L  + L+      +  L+     L  +   + T
Sbjct: 196 NLIEVHLKNNQISDVSPLANTS-NLFIVTLTNQT 228

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 12/61 (19%), Positives = 25/61 (40%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLR 122
               +  L  L +++  +  L      + +L+ LDL  N+   +  +  Q  +L  L L 
Sbjct: 267 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD 326

Query: 123 Y 123
           +
Sbjct: 327 H 327

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 12/147 (8%)

Query: 3   HLQRLPDE-LGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPI 60
            +++LP   L +   +  L+     I E+ + +F   + I  L    +       +    
Sbjct: 56  TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA------IRYLP 109

Query: 61  TLSLDGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERIPESITQR-SKLGR 118
                 +  LT L L    ++ LP  I      L  L +  NN ERI +   Q  + L  
Sbjct: 110 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 169

Query: 119 LSLRYCERLQSLS-KLPCKLHELDAHH 144
           L L    RL  +   L   L   +  +
Sbjct: 170 LQLSSN-RLTHVDLSLIPSLFHANVSY 195

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 15/104 (14%)

Query: 35  FRLNNIDLLSFQRSRGHKQMSLSLPITLSL-------------DGLHTLTYLNLTDCGIT 81
           F   +ID+ +     G + ++L+    ++              D    +  LNL D  I 
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82

Query: 82  RLPENI-GQLSSLEELDLQENNFERIPESITQR-SKLGRLSLRY 123
            +         ++++L +  N    +P  + Q    L  L L  
Sbjct: 83  EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 6e-06
 Identities = 12/61 (19%), Positives = 25/61 (40%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLR 122
               +  L  L +++  +  L      + +L+ LDL  N+   +  +  Q  +L  L L 
Sbjct: 273 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD 332

Query: 123 Y 123
           +
Sbjct: 333 H 333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 4/85 (4%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERIPESITQR-SKLGRLS 120
               +  LT L L    ++ LP  I      L  L +  NN ERI +   Q  + L  L 
Sbjct: 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177

Query: 121 LRYCERLQSLS-KLPCKLHELDAHH 144
           L    RL  +   L   L   +  +
Sbjct: 178 LSSN-RLTHVDLSLIPSLFHANVSY 201

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.0 bits (102), Expect = 9e-06
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 12/91 (13%)

Query: 65  DGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERIPESIT--QRSKLGRLSL 121
            GL +L  L   +  +  L     G L +L+EL++  N  +           + L  L L
Sbjct: 97  SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 122 RYCERLQS--------LSKLPCKLHELDAHH 144
               ++QS        L ++P     LD   
Sbjct: 157 SSN-KIQSIYCTDLRVLHQMPLLNLSLDLSL 186

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 69  TLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYC--ER 126
               L+     I ++   +  L + + L L  NN E+I  S++    L  LSL     ++
Sbjct: 26  EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKK 84

Query: 127 LQSLSKLPCKLHELDAHH 144
           +++L  +   L EL   +
Sbjct: 85  IENLDAVADTLEELWISY 102

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 8/114 (7%)

Query: 8   PDELGNLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDG 66
           P+    L  L  L+     + ++   +F    N+  L    +       +          
Sbjct: 66  PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS------IQKIKNNPFVK 119

Query: 67  LHTLTYLNLTDCGITRLPEN-IGQLSSLEELDLQENNFERIPESITQRSKLGRL 119
              L  L+L+  G++        QL +L+EL L  N  + +            L
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 5/128 (3%)

Query: 1   IFHLQRLPDELGNLEALWSLHAIGTAIREVPSSFFR-LNNIDLLSFQRSRGHK--QMSLS 57
           + ++   P     L  L  L      I  +       L  +++L  Q +   +  + +  
Sbjct: 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 525

Query: 58  LPITLSLDGLHTLTYLNLTDCGITRLPEN-IGQLSSLEELDLQENNFERIPESITQR-SK 115
                 L GL  L  LNL   G   +P      L  L+ +DL  NN   +P S+      
Sbjct: 526 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 585

Query: 116 LGRLSLRY 123
           L  L+L+ 
Sbjct: 586 LKSLNLQK 593

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 12/150 (8%)

Query: 8   PDELGNLEALWSLH----AIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLS 63
           P     +  L+ L      +G ++ E         +I  LS   S    Q+S +   T  
Sbjct: 188 PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS----QLSTTSNTTFL 243

Query: 64  LDGLHTLTYLNLTDCGITRLPEN-IGQLSSLEELDLQENNFERI-PESITQRSKLGRLSL 121
                 LT L+L+   +  +  +    L  LE   L+ NN + +   S+     +  L+L
Sbjct: 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303

Query: 122 RYCERLQSLSKLPCKLHELDAHHCTALESL 151
           +     QS+S     L ++D      L+ L
Sbjct: 304 KRSFTKQSISL--ASLPKIDDFSFQWLKCL 331

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 29/151 (19%), Positives = 46/151 (30%), Gaps = 14/151 (9%)

Query: 8   PDELGNLEALWSLHAIGTAIREV--PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLD 65
            D    L  L  L      I +      +  L NI  +    ++             S  
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK------YLQLTRNSFA 451

Query: 66  GLHTLTYLNLTDCGITRLPEN---IGQLSSLEELDLQENNFERIPES-ITQRSKLGRLSL 121
            + +L  L L    +  +  +      L +L  LDL  NN   I +  +    KL  L L
Sbjct: 452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDL 511

Query: 122 RYCERLQSLSKLPCKLHELDA-HHCTALESL 151
           ++   L  L K       +      + L  L
Sbjct: 512 QHN-NLARLWKHANPGGPIYFLKGLSHLHIL 541

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 67  LHTLTYLNLTDCGITRL-PENIGQLSSLEELDLQENNFERI-PESITQRSKLGRLSLRYC 124
              +T LNLT   + RL   N  + S L  LD+  N   ++ PE   +   L  L+L++ 
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 125 ERLQSLS 131
             L  LS
Sbjct: 84  -ELSQLS 89

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 10/58 (17%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 69  TLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERI-PESITQRSKLGRLSLRYCE 125
           +    + +   +T++P+++   +++  L+L  N   R+   + T+ S+L  L + +  
Sbjct: 5   SHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 9/103 (8%)

Query: 57  SLPITLSLDGLHTLTYLNLTD-CGITRLPENI--GQLSSLEELDLQENNFERIPESITQR 113
             P    +        L +TD   +T +P N   G  +    L L  N F  +       
Sbjct: 119 MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG 178

Query: 114 SKLGRLSLRYCERLQSL-----SKLPCKLHELDAHHCTALESL 151
           +KL  + L   + L  +       +      LD    T++ +L
Sbjct: 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTAL 220

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 65  DGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERIPESITQR-SKLGRLSLR 122
            GL  LT+LNL    +  L   +   L+ L  L L  N    +P  +    ++L +L L 
Sbjct: 56  RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL- 114

Query: 123 YCERLQSL 130
              +L+SL
Sbjct: 115 GGNQLKSL 122

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERIPESITQR-SKLGRLS 120
           +      L  ++L++  I+ L  +    L SL  L L  N    +P+S+ +    L  L 
Sbjct: 51  AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110

Query: 121 LRYCERLQSL 130
           L    ++  L
Sbjct: 111 L-NANKINCL 119

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLR 122
           + + L+++  +   +  I  + + I  L ++ +L L  N    I + +     LG L L 
Sbjct: 41  TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLD 98

Query: 123 YC--ERLQSLSKLPCKLHELDAHHC 145
               + L SL  L  KL  L   H 
Sbjct: 99  ENKVKDLSSLKDLK-KLKSLSLEHN 122

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 64  LDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRY 123
           L  L  L  L L +  IT +   + +L+ L+ L L++N    I   +   +KL  L L  
Sbjct: 130 LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSK 187

Query: 124 C--ERLQSLSKLPCKLHELDAHHCT 146
                L++L+ L   L  L+     
Sbjct: 188 NHISDLRALAGLK-NLDVLELFSQE 211

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 7/105 (6%)

Query: 53  QMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQ 112
            +S S   + S  G ++L +L+L+  G   +  N   L  L+ LD Q +  +R+ E    
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420

Query: 113 RS--KLGRLSLRYCE----RLQSLSKLPCKLHELDAHHCTALESL 151
            S  KL  L + Y             L   L+ L     +  ++ 
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLT-SLNTLKMAGNSFKDNT 464

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 26/132 (19%), Positives = 49/132 (37%), Gaps = 12/132 (9%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPIT 61
            L ++PD++ +  +  ++      ++ +   SF   + +  L   R        +     
Sbjct: 22  KLSKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE------IETIED 73

Query: 62  LSLDGLHTLTYLNLTDCGITRLPEN-IGQLSSLEELDLQENNFERIPE-SITQRSKLGRL 119
            +  GLH L+ L LT   I          L+SLE L   E     +    I Q   L +L
Sbjct: 74  KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133

Query: 120 SLRYCERLQSLS 131
           ++ +   + S  
Sbjct: 134 NVAHN-FIHSCK 144

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 10/112 (8%)

Query: 3   HLQRLPDELGNLEALWSLHAIGTAIREVP--SSFFRLNNIDLLSFQRSRGHKQMSLSLPI 60
               +      LE L  L    + ++ V   S+F  L  +  L    +         +  
Sbjct: 387 GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN------TKIDF 440

Query: 61  TLSLDGLHTLTYLNLTDCGITR--LPENIGQLSSLEELDLQENNFERIPESI 110
                GL +L  L +         L       ++L  LDL +   E+I   +
Sbjct: 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 15/91 (16%)

Query: 61  TLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLS 120
            L L+    LT+L+ +   +T +   +  L+ L   D   N    +  S           
Sbjct: 205 KLDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVST---------- 252

Query: 121 LRYCERLQSLSKLPCKLHELDAHHCTALESL 151
                +L +L  +   L E+D  H T L   
Sbjct: 253 ---LSKLTTLHCIQTDLLEIDLTHNTQLIYF 280

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 14/98 (14%)

Query: 64  LDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRY 123
           ++ L  LT L  T   IT L   + Q ++L  L    N    +   +T  +KL  L+   
Sbjct: 60  IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDT 115

Query: 124 ----------CERLQSLSKLPCKLHELDAHHCTALESL 151
                        L  L+     L E+D  H T L  L
Sbjct: 116 NKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTEL 153

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 25/135 (18%), Positives = 40/135 (29%), Gaps = 16/135 (11%)

Query: 10  ELGNLEALWSLHAIGTAIREVPSSFF-----------RLNNIDLLSFQRSRGHKQMSLSL 58
           ++  L  L         + E+  S              L  IDL    +    +      
Sbjct: 228 DVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRK 287

Query: 59  PITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGR 118
              L +     L  L+    GIT L   + Q   L  L L       +   ++  +KL  
Sbjct: 288 IKELDVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD--VSHNTKLKS 343

Query: 119 LSLRYCERLQSLSKL 133
           LS      +Q  S +
Sbjct: 344 LSCVNA-HIQDFSSV 357

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 11/100 (11%)

Query: 61  TLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPES---------IT 111
            + +  L  LTY + +   +T L   +  LS L  L   + +   I  +           
Sbjct: 226 EIDVTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAE 283

Query: 112 QRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHCTALESL 151
              K+  L + +  +L  L      + ELD      L  L
Sbjct: 284 GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYL 323

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.5 bits (94), Expect = 8e-05
 Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPENIGQ-LSSLEELDLQENNFERIPESITQRSKLGRLSL 121
            L GL  L  L +   G+  +  +       L  L+L  N  E +     Q   L  L L
Sbjct: 51  DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVL 110

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 37.4 bits (86), Expect = 8e-04
 Identities = 23/102 (22%), Positives = 31/102 (30%), Gaps = 30/102 (29%)

Query: 3   HLQRLPDE-LGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPIT 61
           HLQ L    L  L  L +L  + + +R V    F                          
Sbjct: 43  HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH------------------------- 77

Query: 62  LSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNF 103
                   L+ LNL+   +  L     Q  SL+EL L  N  
Sbjct: 78  ----FTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.0 bits (94), Expect = 8e-05
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 64  LDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRY 123
           +     L  L+L+   I+ L   +  L+ LEEL +  N  + +  +    + L RL L  
Sbjct: 59  MQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLDN 115

Query: 124 CE--RLQSLSKLPCKLHELDAHHC 145
            E     SL  L   L  L   + 
Sbjct: 116 NELRDTDSLIHLK-NLEILSIRNN 138

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLR 122
           SL  L  L  L++ +  +  +   +G LS LE LDL  N        +T+  K+  + L 
Sbjct: 123 SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLT 180

Query: 123 Y 123
            
Sbjct: 181 G 181

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 23/135 (17%)

Query: 4   LQRLP--DELGNLEALW----SLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLS 57
           ++ +     L N+  L      LH I         +   L N+  L         Q+  S
Sbjct: 53  IKSVQGIQYLPNVRYLALGGNKLHDIS--------ALKELTNLTYLILT----GNQLQ-S 99

Query: 58  LPITLSLDGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERIPESITQR-SK 115
           LP  +  D L  L  L L +  +  LP+ +  +L++L  L+L  N  + +P+ +  + + 
Sbjct: 100 LPNGV-FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158

Query: 116 LGRLSLRYCERLQSL 130
           L  L L    +LQSL
Sbjct: 159 LTELDL-SYNQLQSL 172

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 30/161 (18%), Positives = 47/161 (29%), Gaps = 27/161 (16%)

Query: 10  ELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSL------------- 56
            +  + ++  +   G  +  +P      N I L   +         L             
Sbjct: 376 TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435

Query: 57  ----SLPITLSLDGLHTLTYLNLTDCGITRL------PENIGQLSSLEELDLQENNFERI 106
               S     +     +L  L L +  +          +    LS L+ L L  N    +
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495

Query: 107 PESITQR-SKLGRLSLRYCERLQSLSK--LPCKLHELDAHH 144
           P  +    + L  LSL    RL  LS   LP  L  LD   
Sbjct: 496 PPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISR 535

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 7/105 (6%)

Query: 8   PDELGNLEALWSLHAIGTAIREVPSSFFR-LNNIDLLSFQRSRGHKQMSLSLPITLSLDG 66
            +   NL  L  L    + I  +    F+ L ++  L          +S ++        
Sbjct: 66  KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG----LSDAVLKDGYFRN 121

Query: 67  LHTLTYLNLTDCGITRLPEN--IGQLSSLEELDLQENNFERIPES 109
           L  LT L+L+   I  L  +   G+L+SL+ +D   N    + E 
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERIPESITQR-SKLGRLS 120
           +  GL  L  LNL+   +  L  +    L  +  +DLQ+N+   I +   +   KL  L 
Sbjct: 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD 368

Query: 121 LRYCERLQSLSKLPCKLHELDAHHC 145
           LR    L ++  +P  + ++     
Sbjct: 369 LRDN-ALTTIHFIPS-IPDIFLSGN 391

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 65  DGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERIPESITQR-SKLGRLSLR 122
           D L +LT L L    +  LP  +  +L+SL  L+L  N  + +P  +  + ++L  L+L 
Sbjct: 49  DELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL- 107

Query: 123 YCERLQSL 130
              +LQSL
Sbjct: 108 NTNQLQSL 115

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 3/87 (3%)

Query: 56  LSLPITLSLDGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERIPESITQR- 113
              P +   +    +   N T  G   +      ++S    LD   N             
Sbjct: 288 FGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL 347

Query: 114 SKLGRLSLRYCERLQSLSKLPCKLHEL 140
           ++L  L L+   +L+ LSK+     ++
Sbjct: 348 TELETLILQMN-QLKELSKIAEMTTQM 373

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 20/125 (16%), Positives = 43/125 (34%), Gaps = 7/125 (5%)

Query: 8   PDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGL 67
              L  LE L         + ++     ++ ++  L          +S            
Sbjct: 344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS----QNSVSYDEK-KGDCSWT 398

Query: 68  HTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERL 127
            +L  LN++   +T           ++ LDL  N  + IP+ + +   L  L++    +L
Sbjct: 399 KSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QL 456

Query: 128 QSLSK 132
           +S+  
Sbjct: 457 KSVPD 461

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 37.9 bits (88), Expect = 7e-04
 Identities = 20/109 (18%), Positives = 41/109 (37%), Gaps = 8/109 (7%)

Query: 2   FHLQRLPDELGNLEALWSLHAIGTAIREVPSSFF-RLNNIDLLSFQRSRGHKQMSLSLPI 60
              +       +L+AL     +        S  +   +N+++ +F  S         +  
Sbjct: 263 LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS------GTRMVH 316

Query: 61  TLSLDGLHTLTYLNLTDCGITRLP-ENIGQLSSLEELDLQENNFERIPE 108
            L    +    +L+ ++  +T    EN G L+ LE L LQ N  + + +
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 37.9 bits (88), Expect = 7e-04
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 67  LHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQR-SKLGRLSL 121
              +  L+L    I  +P+ + +L +L+EL++  N  + +P+ I  R + L ++ L
Sbjct: 420 PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERIPESITQR-SKLGRLS 120
           +  GL  L  LNL+   +  +   +   L  LE LDL  N+   + +        L  L+
Sbjct: 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377

Query: 121 LRYCERLQSL 130
           L    +L+S+
Sbjct: 378 LDTN-QLKSV 386

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERIPESI 110
           + + L  L  L L    +  +P  +   LS+L +LD+ EN    + + +
Sbjct: 75  AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM 123

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 57  SLPITLSLDGLHTLTYLNLTDCGITRLPENI-GQLSSLEELDLQENNFERIPESITQR-S 114
            +        L  L  L L    +T +  N     S ++EL L EN  + I   +     
Sbjct: 43  RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLH 102

Query: 115 KLGRLSLR 122
           +L  L+L 
Sbjct: 103 QLKTLNLY 110

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 37.5 bits (87), Expect = 8e-04
 Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 69  TLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQR-SKLGRLSL 121
            +  L+L +  I  +P+++  L +L+EL++  N  + +P+ +  R + L  + L
Sbjct: 451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWL 504

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 36.7 bits (85), Expect = 8e-04
 Identities = 12/95 (12%), Positives = 34/95 (35%), Gaps = 13/95 (13%)

Query: 66  GLHTLTYLNLTDCGIT-RLPENIGQLSSLEELDLQENNF------ERIPESITQRSKLGR 118
             + +  ++ TD  I     +++  L  +E++ L + ++      ER+ +    +  +  
Sbjct: 59  DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLE 118

Query: 119 LSLRYCER-----LQSLSKLPCKLHELDAHHCTAL 148
           + +  C       + +L      L  L       +
Sbjct: 119 MEIISCGNVTDKGIIALHHFR-NLKYLFLSDLPGV 152

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 37.2 bits (86), Expect = 8e-04
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 57  SLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKL 116
                 S D    L  LNL+  G+ ++P+ +     L  LDL  N  +R P S  +  ++
Sbjct: 242 DAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA--KLSVLDLSYNRLDRNP-SPDELPQV 298

Query: 117 GRLSLRY 123
           G LSL+ 
Sbjct: 299 GNLSLKG 305

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	151
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.82
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.71
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.71
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.7
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.7
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.7
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.69
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.69
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.69
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.69
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.68
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.68
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.68
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.67
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.67
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.67
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.67
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.66
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.66
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.66
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.66
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.64
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.64
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.64
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.64
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.64
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.64
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.63
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.63
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.63
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.63
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.62
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.62
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.62
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.61
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.61
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.61
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.61
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.61
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.61
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.61
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.6
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.6
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.59
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.59
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.59
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.59
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.59
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.59
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.59
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.59
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.58
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.58
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.58
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.58
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.57
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.57
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.57
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.56
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.56
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.56
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.56
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.55
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.55
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.55
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.54
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.54
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.54
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.54
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.54
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.53
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.53
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.52
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.52
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.51
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.5
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.5
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.49
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.49
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.49
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.49
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.48
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.48
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.48
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.47
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.47
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.46
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.46
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.46
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.44
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.44
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.43
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.42
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.39
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.38
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.37
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.34
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.31
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.29
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.29
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.25
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.23
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.06
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.83
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.82
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.81
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.79
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.66
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.64
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.63
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.62
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.6
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.53
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.45
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.34
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.27
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.27
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.26
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.26
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.18
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.07
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.55
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.41
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.18
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.18
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.11
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.96
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.62
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.28
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.23
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.15

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.82  E-value=6.6e-20  Score=129.58  Aligned_cols=138  Identities=29%  Similarity=0.463  Sum_probs=74.8

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCC---------CCCCcccEE
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSL---------DGLHTLTYL   73 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~---------~~~~~L~~l   73 (151)
                      ++..+|..++.+++|++|++++|.++.+|..+..+++|+.+++++|...    +..|  ..+         ..+++|+.|
T Consensus       115 ~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~----~~~p--~~~~~~~~~~~~~~l~~L~~L  188 (328)
T 4fcg_A          115 GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPEL----TELP--EPLASTDASGEHQGLVNLQSL  188 (328)
T ss_dssp             CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTC----CCCC--SCSEEEC-CCCEEESTTCCEE
T ss_pred             CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCc----cccC--hhHhhccchhhhccCCCCCEE
Confidence            4556666677777777777777777766766777777777777765421    2222  222         124455555


Q ss_pred             EcccCCCCccCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCC---CCCcceEcccCCc
Q 041851           74 NLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKL---PCKLHELDAHHCT  146 (151)
Q Consensus        74 ~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l~~l~l~~~~  146 (151)
                      ++++|.++.+|..++.+++|++|++++|.++.+|..+..+++|+.|++++|...+.+|..   +++|+.|++++|.
T Consensus       189 ~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~  264 (328)
T 4fcg_A          189 RLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS  264 (328)
T ss_dssp             EEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCT
T ss_pred             ECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCC
Confidence            555555555554455555555555555555544444555555555555554444444432   2344444444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.79  E-value=8.7e-19  Score=123.84  Aligned_cols=141  Identities=29%  Similarity=0.427  Sum_probs=108.7

Q ss_pred             cCCCCChhccCcccccccccccccce-ecChhhhc---------CCCCCeeeccccccCCccccccccccCCCCCCcccE
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIR-EVPSSFFR---------LNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTY   72 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~-~~~~~~~~---------l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~   72 (151)
                      ++..+|..+..+++|++|++++|.+. .+|..+..         +++|+.+++++|.    +. .+|  ..++.+++|+.
T Consensus       138 ~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~----l~-~lp--~~l~~l~~L~~  210 (328)
T 4fcg_A          138 PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG----IR-SLP--ASIANLQNLKS  210 (328)
T ss_dssp             CCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC----CC-CCC--GGGGGCTTCCE
T ss_pred             ccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC----cC-cch--HhhcCCCCCCE
Confidence            56678888888889999999886654 66665443         8888888888776    33 455  56777888888


Q ss_pred             EEcccCCCCccCcccCCCCCCCEEeCCCCCCc-cCCcchhccCccCEEeccCCcccccCCCC---CCCcceEcccCCccc
Q 041851           73 LNLTDCGITRLPENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSLRYCERLQSLSKL---PCKLHELDAHHCTAL  148 (151)
Q Consensus        73 l~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l~~l~l~~~~~l  148 (151)
                      |++++|.+++++..++.+++|++|++++|.+. .+|..+..+++|+.|++++|...+.+|..   +++|++|++++|..+
T Consensus       211 L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  290 (328)
T 4fcg_A          211 LKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL  290 (328)
T ss_dssp             EEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred             EEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence            88888888887777888888888888887766 77777888888888888888777777753   377888888887765


Q ss_pred             cc
Q 041851          149 ES  150 (151)
Q Consensus       149 ~~  150 (151)
                      +.
T Consensus       291 ~~  292 (328)
T 4fcg_A          291 SR  292 (328)
T ss_dssp             CC
T ss_pred             hh
Confidence            43

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=4.9e-17  Score=108.88  Aligned_cols=135  Identities=23%  Similarity=0.330  Sum_probs=111.6

Q ss_pred             cCCCCChhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      ++..+|..+.  ++++.|++++|.++.+++ .+..+++|+.|++++|.    +....|  ..|..+++|+.|++++|.++
T Consensus        22 ~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~----i~~~~~--~~~~~l~~L~~L~Ls~N~l~   93 (220)
T 2v9t_B           22 GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ----ISELAP--DAFQGLRSLNSLVLYGNKIT   93 (220)
T ss_dssp             CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC----CCEECT--TTTTTCSSCCEEECCSSCCC
T ss_pred             CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc----CCCcCH--HHhhCCcCCCEEECCCCcCC
Confidence            5778887654  689999999999997765 78889999999999887    555556  78889999999999999999


Q ss_pred             ccCcc-cCCCCCCCEEeCCCCCCccC-CcchhccCccCEEeccCCcccccCCC----CCCCcceEcccCCc
Q 041851           82 RLPEN-IGQLSSLEELDLQENNFERI-PESITQRSKLGRLSLRYCERLQSLSK----LPCKLHELDAHHCT  146 (151)
Q Consensus        82 ~~~~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~----~~~~l~~l~l~~~~  146 (151)
                      +++.. +..+++|+.|++++|.++.+ +..+..+++|+.|++++|. +..++.    .+++|+.|++++++
T Consensus        94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence            97764 57899999999999999955 5578889999999999985 455553    24778999998764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=9e-17  Score=108.19  Aligned_cols=135  Identities=22%  Similarity=0.251  Sum_probs=111.8

Q ss_pred             cCCCCChhccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      ++..+|..+.  +++++|++++|.++.+ +..+..+++|+.|++++|.    +....+  ..+..+++|+.|++++|.++
T Consensus        30 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~----l~~i~~--~~~~~l~~L~~L~Ls~N~l~  101 (229)
T 3e6j_A           30 RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ----LGALPV--GVFDSLTQLTVLDLGTNQLT  101 (229)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCCC
T ss_pred             CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC----CCCcCh--hhcccCCCcCEEECCCCcCC
Confidence            5777887654  8899999999999966 5678899999999999887    433333  56788999999999999999


Q ss_pred             ccCc-ccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC----CCCCcceEcccCCc
Q 041851           82 RLPE-NIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK----LPCKLHELDAHHCT  146 (151)
Q Consensus        82 ~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~----~~~~l~~l~l~~~~  146 (151)
                      +++. .+..+++|+.|++++|.++.+|..+..+++|+.|++++|. +..++.    .+++|+.|++.+++
T Consensus       102 ~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          102 VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence            9665 4678999999999999999999999999999999999985 556653    24788999998654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=3.8e-17  Score=107.59  Aligned_cols=134  Identities=18%  Similarity=0.227  Sum_probs=88.9

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      ++..+| .+..+++|++|++++|.++.++ .+..+++|+++++++|.    +.+..+  ..+..+++|+.|++++|.+++
T Consensus        55 ~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~----l~~~~~--~~l~~l~~L~~L~Ls~n~i~~  126 (197)
T 4ezg_A           55 NVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKD----VTSDKI--PNLSGLTSLTLLDISHSAHDD  126 (197)
T ss_dssp             CCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTT----CBGGGS--CCCTTCTTCCEEECCSSBCBG
T ss_pred             CccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCc----cCcccC--hhhcCCCCCCEEEecCCccCc
Confidence            445556 5666777777777777655443 46667777777777665    444444  566677777778887777776


Q ss_pred             -cCcccCCCCCCCEEeCCCCC-CccCCcchhccCccCEEeccCCcccccCCC--CCCCcceEcccCCc
Q 041851           83 -LPENIGQLSSLEELDLQENN-FERIPESITQRSKLGRLSLRYCERLQSLSK--LPCKLHELDAHHCT  146 (151)
Q Consensus        83 -~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~--~~~~l~~l~l~~~~  146 (151)
                       .+..+..+++|++|++++|. ++.++ .+..+++|+.|++++|. +..++.  .+++|++|+++++.
T Consensus       127 ~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          127 SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC-
T ss_pred             HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCcc
Confidence             55667777778888887776 66665 56677777888877774 444442  23667777776654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.72  E-value=2.1e-16  Score=107.62  Aligned_cols=130  Identities=23%  Similarity=0.284  Sum_probs=84.5

Q ss_pred             hccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCc-cc
Q 041851           10 ELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPE-NI   87 (151)
Q Consensus        10 ~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~   87 (151)
                      .+..+++|++|++++|.++.+++ .+..+++|+.|++++|.    +....+  ..+..+++|+.|++++|.+++++. .+
T Consensus        54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~  127 (251)
T 3m19_A           54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ----LASLPL--GVFDHLTQLDKLYLGGNQLKSLPSGVF  127 (251)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC----CCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc----ccccCh--hHhcccCCCCEEEcCCCcCCCcChhHh
Confidence            45666677777777776664433 45666777777777665    333333  456677777777777777777554 35


Q ss_pred             CCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccccCCC----CCCCcceEcccCCc
Q 041851           88 GQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLSK----LPCKLHELDAHHCT  146 (151)
Q Consensus        88 ~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~----~~~~l~~l~l~~~~  146 (151)
                      ..+++|+.|++++|.++.++. .+..+++|+.|++++|. +..++.    .+++|+.|++++++
T Consensus       128 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          128 DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             ccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCc
Confidence            667778888887777776655 56677778888887774 344442    23667777777654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.71  E-value=2.6e-16  Score=105.38  Aligned_cols=136  Identities=16%  Similarity=0.184  Sum_probs=107.5

Q ss_pred             cCCCCChhccCcccccccccccccceecCh--hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPS--SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI   80 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~--~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l   80 (151)
                      +++.+|..+.  ..+++|++++|.++.+++  .+..+++|+.+++++|.    +....+  ..+..+++|+.|++++|.+
T Consensus        22 ~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~----i~~i~~--~~~~~l~~L~~L~Ls~N~l   93 (220)
T 2v70_A           22 KLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK----ITDIEE--GAFEGASGVNEILLTSNRL   93 (220)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC----CCEECT--TTTTTCTTCCEEECCSSCC
T ss_pred             CcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc----CCEECH--HHhCCCCCCCEEECCCCcc
Confidence            5677887653  457899999999997632  47889999999999886    444444  5788899999999999999


Q ss_pred             CccCc-ccCCCCCCCEEeCCCCCCccC-CcchhccCccCEEeccCCcccccCCCC---CCCcceEcccCCc
Q 041851           81 TRLPE-NIGQLSSLEELDLQENNFERI-PESITQRSKLGRLSLRYCERLQSLSKL---PCKLHELDAHHCT  146 (151)
Q Consensus        81 ~~~~~-~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l~~l~l~~~~  146 (151)
                      ++++. .+..+++|++|++++|.++.+ |..+..+++|+.|++++|......|..   +++|+.|++++++
T Consensus        94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            98554 588899999999999999955 667888999999999998643333433   3778899988764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.71  E-value=3.9e-17  Score=114.64  Aligned_cols=112  Identities=23%  Similarity=0.366  Sum_probs=51.0

Q ss_pred             CChhccCccccccccccc-ccce-ecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-c
Q 041851            7 LPDELGNLEALWSLHAIG-TAIR-EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-L   83 (151)
Q Consensus         7 lp~~~~~l~~L~~L~l~~-~~i~-~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~   83 (151)
                      +|..+..+++|++|++++ |.+. .+|..+..+++|+++++++|.    +.+..|  ..+..+++|+++++++|.+++ +
T Consensus        68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~----l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~  141 (313)
T 1ogq_A           68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN----VSGAIP--DFLSQIKTLVTLDFSYNALSGTL  141 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC----CEEECC--GGGGGCTTCCEEECCSSEEESCC
T ss_pred             cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe----eCCcCC--HHHhCCCCCCEEeCCCCccCCcC
Confidence            445555555555555552 4444 444445555555555555443    222333  334444444444444444442 3


Q ss_pred             CcccCCCCCCCEEeCCCCCCc-cCCcchhccC-ccCEEeccCC
Q 041851           84 PENIGQLSSLEELDLQENNFE-RIPESITQRS-KLGRLSLRYC  124 (151)
Q Consensus        84 ~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~-~L~~l~l~~n  124 (151)
                      |..+..+++|++|++++|.++ .+|..+..++ .|+.|++++|
T Consensus       142 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N  184 (313)
T 1ogq_A          142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN  184 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred             ChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence            444444444444444444444 3444444443 4444444444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.70  E-value=1.3e-16  Score=123.76  Aligned_cols=139  Identities=18%  Similarity=0.276  Sum_probs=107.8

Q ss_pred             CCChhccCcccccccccccccce-ecChhhhcCCCCCeeeccccccCCccc-----------------------------
Q 041851            6 RLPDELGNLEALWSLHAIGTAIR-EVPSSFFRLNNIDLLSFQRSRGHKQMS-----------------------------   55 (151)
Q Consensus         6 ~lp~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~l~l~~n~~~~~~~-----------------------------   55 (151)
                      .+|..++.+++|++|++++|.+. .+|..+..+++|+.++++.|.....++                             
T Consensus       505 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  584 (768)
T 3rgz_A          505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK  584 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCC
T ss_pred             cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccc
Confidence            56777777788888888888877 667777788888888887775321111                             


Q ss_pred             -------------------------------------cccccccCCCCCCcccEEEcccCCCCc-cCcccCCCCCCCEEe
Q 041851           56 -------------------------------------LSLPITLSLDGLHTLTYLNLTDCGITR-LPENIGQLSSLEELD   97 (151)
Q Consensus        56 -------------------------------------~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~~~~l~~L~~L~   97 (151)
                                                           +..|  ..++.+++++.+++++|.+++ +|..++.++.|+.|+
T Consensus       585 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~--~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  662 (768)
T 3rgz_A          585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS--PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN  662 (768)
T ss_dssp             TTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC--CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEE
T ss_pred             ccccccccccccccccchhhhccccccccccccceecccCc--hhhhccccccEEECcCCcccccCCHHHhccccCCEEe
Confidence                                                 0112  345566788999999999987 888999999999999


Q ss_pred             CCCCCCc-cCCcchhccCccCEEeccCCcccccCCCC---CCCcceEcccCCc
Q 041851           98 LQENNFE-RIPESITQRSKLGRLSLRYCERLQSLSKL---PCKLHELDAHHCT  146 (151)
Q Consensus        98 l~~n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l~~l~l~~~~  146 (151)
                      +++|.++ .+|..++.+++|+.|++++|...+.+|..   +++|++|++++|.
T Consensus       663 Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN  715 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred             CcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence            9999998 88999999999999999999877788864   3678888998775

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.70  E-value=2.3e-16  Score=119.17  Aligned_cols=136  Identities=24%  Similarity=0.273  Sum_probs=110.6

Q ss_pred             cCCCCChhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      ++.++|..+  .+++++|++++|.++.+++ +|..+++|++|++++|.    +....+  ..|..+++|++|++++|.++
T Consensus        42 ~l~~vP~~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~----i~~i~~--~~f~~L~~L~~L~Ls~N~l~  113 (635)
T 4g8a_A           42 NFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE----IQTIED--GAYQSLSHLSTLILTGNPIQ  113 (635)
T ss_dssp             CCSSCCSSS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC----CCEECT--TTTTTCTTCCEEECTTCCCC
T ss_pred             CcCccCCCC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc----CCCcCh--hHhcCCCCCCEEEccCCcCC
Confidence            577888765  2579999999999998864 78999999999999886    444445  67889999999999999999


Q ss_pred             ccCc-ccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccc-cCCCC---CCCcceEcccCCc
Q 041851           82 RLPE-NIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQ-SLSKL---PCKLHELDAHHCT  146 (151)
Q Consensus        82 ~~~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~-~~~~~---~~~l~~l~l~~~~  146 (151)
                      +++. .+..+++|++|++++|.++.++. .++++++|+.|++++|.... .+|..   +++|++|+++++.
T Consensus       114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence            9764 57899999999999999997765 58899999999999986322 33433   4788999988764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.70  E-value=1.2e-17  Score=127.10  Aligned_cols=137  Identities=18%  Similarity=0.212  Sum_probs=105.7

Q ss_pred             cCCCCChhccCccccccccccccccee------------------cChhhh--cCCCCCeeeccccccCCcccccccccc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIRE------------------VPSSFF--RLNNIDLLSFQRSRGHKQMSLSLPITL   62 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~------------------~~~~~~--~l~~L~~l~l~~n~~~~~~~~~~~~~~   62 (151)
                      ++..+|..++++++|++|++++|.++.                  +|..+.  .+++|++++++.|.    +.+..|  +
T Consensus       194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~----l~~~~p--~  267 (636)
T 4eco_A          194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP----NLTKLP--T  267 (636)
T ss_dssp             EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT----TCSSCC--T
T ss_pred             CCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc----CCccCh--H
Confidence            566688889999999999999999886                  888877  89999999999776    555667  7


Q ss_pred             CCCCCCcccEEEcccCC-CCc--cCcccCCC------CCCCEEeCCCCCCccCCc--chhccCccCEEeccCCcccccCC
Q 041851           63 SLDGLHTLTYLNLTDCG-ITR--LPENIGQL------SSLEELDLQENNFERIPE--SITQRSKLGRLSLRYCERLQSLS  131 (151)
Q Consensus        63 ~~~~~~~L~~l~l~~~~-l~~--~~~~~~~l------~~L~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~  131 (151)
                      .++.+++|+.|++++|. +++  +|..++.+      ++|++|++++|.++.+|.  .++.+++|+.|++++|...+.+|
T Consensus       268 ~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip  347 (636)
T 4eco_A          268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP  347 (636)
T ss_dssp             TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred             HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh
Confidence            78888888888888887 775  67666665      788888888888887777  77777888888888776444666


Q ss_pred             CC--CCCcceEcccCC
Q 041851          132 KL--PCKLHELDAHHC  145 (151)
Q Consensus       132 ~~--~~~l~~l~l~~~  145 (151)
                      .+  +++|+.|++++|
T Consensus       348 ~~~~l~~L~~L~L~~N  363 (636)
T 4eco_A          348 AFGSEIKLASLNLAYN  363 (636)
T ss_dssp             CCEEEEEESEEECCSS
T ss_pred             hhCCCCCCCEEECCCC
Confidence            22  255666666654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.69  E-value=6.8e-16  Score=106.13  Aligned_cols=46  Identities=24%  Similarity=0.399  Sum_probs=24.6

Q ss_pred             CCCCCh-hccCcccccccccccccceecChh-hhcCCCCCeeeccccc
Q 041851            4 LQRLPD-ELGNLEALWSLHAIGTAIREVPSS-FFRLNNIDLLSFQRSR   49 (151)
Q Consensus         4 l~~lp~-~~~~l~~L~~L~l~~~~i~~~~~~-~~~l~~L~~l~l~~n~   49 (151)
                      +..+|. .+..+++|++|++++|.++.++.. +..+++|+.+++++|.
T Consensus        49 l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~   96 (270)
T 2o6q_A           49 LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK   96 (270)
T ss_dssp             CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence            334442 455556666666666666555432 3455566666665554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.69  E-value=1.7e-16  Score=111.44  Aligned_cols=141  Identities=16%  Similarity=0.227  Sum_probs=100.6

Q ss_pred             CCChhccCcccccccccccccce-ecChhhhcCC-CCCeeeccccccCCc-------------------cccccccccCC
Q 041851            6 RLPDELGNLEALWSLHAIGTAIR-EVPSSFFRLN-NIDLLSFQRSRGHKQ-------------------MSLSLPITLSL   64 (151)
Q Consensus         6 ~lp~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~-~L~~l~l~~n~~~~~-------------------~~~~~~~~~~~   64 (151)
                      .+|..+..+++|++|++++|.++ .+|..+..+. +|+.++++.|.....                   +.+..+  ..+
T Consensus       140 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~--~~~  217 (313)
T 1ogq_A          140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDAS--VLF  217 (313)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCG--GGC
T ss_pred             cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCC--HHH
Confidence            46667777777777777777776 6666676666 677777776642210                   122334  566


Q ss_pred             CCCCcccEEEcccCCCCccCcccCCCCCCCEEeCCCCCCc-cCCcchhccCccCEEeccCCcccccCCCC--CCCcceEc
Q 041851           65 DGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSLRYCERLQSLSKL--PCKLHELD  141 (151)
Q Consensus        65 ~~~~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~--~~~l~~l~  141 (151)
                      ..+++|+.+++++|.+++.++.+..+++|++|++++|.++ .+|..+..+++|+.|++++|...+.+|..  +++|+.++
T Consensus       218 ~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~  297 (313)
T 1ogq_A          218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA  297 (313)
T ss_dssp             CTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGG
T ss_pred             hcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHH
Confidence            7778888888888887764445777888888888888888 78888888888888888888766677754  46677778


Q ss_pred             ccCCccc
Q 041851          142 AHHCTAL  148 (151)
Q Consensus       142 l~~~~~l  148 (151)
                      +.+++.+
T Consensus       298 l~~N~~l  304 (313)
T 1ogq_A          298 YANNKCL  304 (313)
T ss_dssp             TCSSSEE
T ss_pred             hcCCCCc
Confidence            8777654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.69  E-value=4.7e-16  Score=108.13  Aligned_cols=123  Identities=23%  Similarity=0.223  Sum_probs=56.0

Q ss_pred             ccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCc-ccCCCCCC
Q 041851           15 EALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPE-NIGQLSSL   93 (151)
Q Consensus        15 ~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~l~~L   93 (151)
                      ++|++|++++|.++.+|..+..+++|+.++++.|+    +....+  ..|..+++|+.|++++|.+++++. .+..+++|
T Consensus        77 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~----l~~l~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  150 (290)
T 1p9a_G           77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR----LTSLPL--GALRGLGELQELYLKGNELKTLPPGLLTPTPKL  150 (290)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC----CCCCCS--STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             CcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc----CcccCH--HHHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence            33333344444333333333344444444444443    222222  334455555555555555555332 23445555


Q ss_pred             CEEeCCCCCCccCCcc-hhccCccCEEeccCCcccccCCCCC---CCcceEcccC
Q 041851           94 EELDLQENNFERIPES-ITQRSKLGRLSLRYCERLQSLSKLP---CKLHELDAHH  144 (151)
Q Consensus        94 ~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~---~~l~~l~l~~  144 (151)
                      +.|++++|.++.+|.. +..+++|+.|++++|. +..+|...   .+++.+++.+
T Consensus       151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~  204 (290)
T 1p9a_G          151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHG  204 (290)
T ss_dssp             CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCS
T ss_pred             CEEECCCCcCCccCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCC
Confidence            5555555555544442 3445555555555553 33444321   3455555553

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.69  E-value=1e-15  Score=105.42  Aligned_cols=130  Identities=27%  Similarity=0.374  Sum_probs=78.9

Q ss_pred             hccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCc-cc
Q 041851           10 ELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPE-NI   87 (151)
Q Consensus        10 ~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~   87 (151)
                      .+..+++|++|++++|.++.+++ .+..+++|+.+++++|.    +....+  ..+..+++|+.|++++|.+++++. .+
T Consensus        80 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~  153 (272)
T 3rfs_A           80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ----LQSLPD--GVFDKLTNLTYLNLAHNQLQSLPKGVF  153 (272)
T ss_dssp             GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC----CCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc----CCccCH--HHhccCCCCCEEECCCCccCccCHHHh
Confidence            45556666666666666664443 34556666666666554    332233  445667777777777777776443 34


Q ss_pred             CCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccccCCC----CCCCcceEcccCCc
Q 041851           88 GQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLSK----LPCKLHELDAHHCT  146 (151)
Q Consensus        88 ~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~----~~~~l~~l~l~~~~  146 (151)
                      ..+++|+.|++++|.++.++. .+..+++|+.|++++|.. ..++.    .+++|+.|++.+++
T Consensus       154 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          154 DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC-CccCHHHHhCCcCCCEEEccCCC
Confidence            667777777777777775544 346667777777777753 33332    23667777776543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.68  E-value=5.5e-16  Score=107.23  Aligned_cols=39  Identities=13%  Similarity=0.198  Sum_probs=21.3

Q ss_pred             hccCcccccccccccccceec-ChhhhcCCCCCeeecccc
Q 041851           10 ELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRS   48 (151)
Q Consensus        10 ~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n   48 (151)
                      .+..+++|++|++++|.++.+ +..+..+++|+.+++++|
T Consensus        51 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           51 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            345555566666665555533 334555555555555544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.68  E-value=6.2e-16  Score=101.58  Aligned_cols=116  Identities=22%  Similarity=0.313  Sum_probs=99.6

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      ++..+|..+.  +++++|++++|.++.+|..+..+++|+.|++++|.    +....+  ..|..+++|+.|++++|.+++
T Consensus        21 ~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~----i~~i~~--~~f~~l~~L~~L~Ls~N~l~~   92 (193)
T 2wfh_A           21 GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR----ISTLSN--QSFSNMTQLLTLILSYNRLRC   92 (193)
T ss_dssp             CCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCCCB
T ss_pred             CCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc----CCEeCH--hHccCCCCCCEEECCCCccCE
Confidence            5778887653  68999999999999998889999999999999887    444445  678899999999999999999


Q ss_pred             cC-cccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcc
Q 041851           83 LP-ENIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCER  126 (151)
Q Consensus        83 ~~-~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~  126 (151)
                      ++ ..+..+++|+.|++++|.++.++. .+..+++|+.+++++|+.
T Consensus        93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            55 468899999999999999997776 577889999999999874

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.68  E-value=2.9e-16  Score=121.77  Aligned_cols=135  Identities=24%  Similarity=0.248  Sum_probs=105.1

Q ss_pred             CCChhccCcccccccccccccce-ecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-c
Q 041851            6 RLPDELGNLEALWSLHAIGTAIR-EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-L   83 (151)
Q Consensus         6 ~lp~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~   83 (151)
                      .+|..+..+++|++|++++|.++ .+|..+..+++|+.+++..|.    +.+..|  ..+..+++|+.+++++|.+++ +
T Consensus       409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~----l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~  482 (768)
T 3rgz_A          409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM----LEGEIP--QELMYVKTLETLILDFNDLTGEI  482 (768)
T ss_dssp             ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC----CCSCCC--GGGGGCTTCCEEECCSSCCCSCC
T ss_pred             ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc----ccCcCC--HHHcCCCCceEEEecCCcccCcC
Confidence            46677777788888888888777 567777778888888888765    445566  667778888888888888886 7


Q ss_pred             CcccCCCCCCCEEeCCCCCCc-cCCcchhccCccCEEeccCCcccccCCCC---CCCcceEcccCCc
Q 041851           84 PENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSLRYCERLQSLSKL---PCKLHELDAHHCT  146 (151)
Q Consensus        84 ~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l~~l~l~~~~  146 (151)
                      |..+..+++|+.|++++|.++ .+|.+++.+++|+.|++++|...+.+|..   +++|+.|++++|.
T Consensus       483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence            778888888888888888888 77888888888888888888766677753   3778888888765

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.68  E-value=1.6e-15  Score=104.27  Aligned_cols=137  Identities=29%  Similarity=0.435  Sum_probs=111.8

Q ss_pred             cCCCCChh-ccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851            3 HLQRLPDE-LGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI   80 (151)
Q Consensus         3 ~l~~lp~~-~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l   80 (151)
                      ++..+|.. +..+++|++|++++|.++.++. .+..+++|+.+++++|.    +....+  ..+..+++|+.|++++|.+
T Consensus        72 ~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~--~~~~~l~~L~~L~Ls~n~l  145 (270)
T 2o6q_A           72 KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ----LKSLPP--RVFDSLTKLTYLSLGYNEL  145 (270)
T ss_dssp             CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCC
T ss_pred             ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc----cCeeCH--HHhCcCcCCCEEECCCCcC
Confidence            46677755 4789999999999999997765 56889999999999886    444444  6678899999999999999


Q ss_pred             CccCc-ccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccccCCCC----CCCcceEcccCCc
Q 041851           81 TRLPE-NIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLSKL----PCKLHELDAHHCT  146 (151)
Q Consensus        81 ~~~~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~----~~~l~~l~l~~~~  146 (151)
                      ++++. .+..+++|+.|++++|.++.++. .+..+++|+.|++++|. +..+|..    +++|+.|++.+++
T Consensus       146 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCCC
Confidence            98665 47889999999999999997665 57788999999999985 5566642    4788999998654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.68  E-value=3.1e-16  Score=111.55  Aligned_cols=135  Identities=23%  Similarity=0.274  Sum_probs=103.9

Q ss_pred             cCCCCChhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      ++..+|..+.  +++++|++++|.++.++. .+..+++|+.+++++|.    +.+..+  ..+..+++|+.|++++|.++
T Consensus        42 ~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~--~~~~~l~~L~~L~Ls~n~l~  113 (353)
T 2z80_A           42 SLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG----INTIEE--DSFSSLGSLEHLDLSYNYLS  113 (353)
T ss_dssp             TCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC----CCEECT--TTTTTCTTCCEEECCSSCCS
T ss_pred             Cccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc----cCccCH--hhcCCCCCCCEEECCCCcCC
Confidence            5677887654  589999999999887765 78889999999999776    444445  66888889999999999988


Q ss_pred             ccCcc-cCCCCCCCEEeCCCCCCccCCc--chhccCccCEEeccCCcccccCCC-C---CCCcceEcccCC
Q 041851           82 RLPEN-IGQLSSLEELDLQENNFERIPE--SITQRSKLGRLSLRYCERLQSLSK-L---PCKLHELDAHHC  145 (151)
Q Consensus        82 ~~~~~-~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~-~---~~~l~~l~l~~~  145 (151)
                      +++.. +..+++|++|++++|.++.+|.  .+..+++|+.|++++|..+..++. .   +++|++|++++|
T Consensus       114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            87654 7788999999999998887776  677888899999988854555542 2   356677777654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=6.2e-16  Score=101.47  Aligned_cols=116  Identities=21%  Similarity=0.284  Sum_probs=98.0

Q ss_pred             cCCCCChhccCcccccccccccccceecCh--hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPS--SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI   80 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~--~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l   80 (151)
                      +++.+|..+..  ++++|++++|.++.++.  .+..+++|+.|++++|.    +.+..|  ..+..+++|+.|++++|.+
T Consensus        19 ~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~--~~~~~l~~L~~L~Ls~N~l   90 (192)
T 1w8a_A           19 GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ----LTGIEP--NAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC----CCCBCT--TTTTTCTTCCEEECCSCCC
T ss_pred             CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCC----CCCcCH--hHcCCcccCCEEECCCCcC
Confidence            57788876643  89999999999997765  38889999999999887    555556  7888999999999999999


Q ss_pred             CccC-cccCCCCCCCEEeCCCCCCc-cCCcchhccCccCEEeccCCcc
Q 041851           81 TRLP-ENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSLRYCER  126 (151)
Q Consensus        81 ~~~~-~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~~  126 (151)
                      ++++ ..+..+++|++|++++|.++ ..|..+..+++|+.+++++|+.
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            9854 45888999999999999999 4577788899999999999874

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.67  E-value=1.6e-15  Score=103.26  Aligned_cols=135  Identities=21%  Similarity=0.322  Sum_probs=111.6

Q ss_pred             cCCCCChhccCcccccccccccccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      ++..+|..+.  ++++.|++++|.++.++ ..+..+++|+.|++++|.    +....+  ..+..+++|+.|++++|.++
T Consensus        25 ~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~--~~~~~l~~L~~L~L~~n~l~   96 (251)
T 3m19_A           25 SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ----LQTLSA--GVFDDLTELGTLGLANNQLA   96 (251)
T ss_dssp             CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC----CCCCCT--TTTTTCTTCCEEECTTSCCC
T ss_pred             CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc----CCccCH--hHhccCCcCCEEECCCCccc
Confidence            5677887654  68999999999999664 478899999999999887    444455  66888999999999999999


Q ss_pred             ccC-cccCCCCCCCEEeCCCCCCccCCcc-hhccCccCEEeccCCcccccCCC-C---CCCcceEcccCCc
Q 041851           82 RLP-ENIGQLSSLEELDLQENNFERIPES-ITQRSKLGRLSLRYCERLQSLSK-L---PCKLHELDAHHCT  146 (151)
Q Consensus        82 ~~~-~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~-~---~~~l~~l~l~~~~  146 (151)
                      +++ ..+..+++|++|++++|.++.++.. +..+++|+.|++++|. +..++. .   +++|++|+++++.
T Consensus        97 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A           97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCc
Confidence            865 4678999999999999999977764 6789999999999985 566664 2   3789999998764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.67  E-value=1.6e-15  Score=104.97  Aligned_cols=112  Identities=29%  Similarity=0.427  Sum_probs=57.4

Q ss_pred             ChhccCccccccccccccc-ceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCc
Q 041851            8 PDELGNLEALWSLHAIGTA-IREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPE   85 (151)
Q Consensus         8 p~~~~~l~~L~~L~l~~~~-i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~   85 (151)
                      |..+..+++|++|++++|. ++.+ +..+..+++|+.+++.+|.    +....+  ..+..+++|+.+++++|.+++++.
T Consensus        73 ~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~  146 (285)
T 1ozn_A           73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG----LQELGP--GLFRGLAALQYLYLQDNALQALPD  146 (285)
T ss_dssp             TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC----CCCCCT--TTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc----CCEECH--hHhhCCcCCCEEECCCCcccccCH
Confidence            4455666666666666665 5544 3455556666666666554    222223  344445555555555555554332


Q ss_pred             -ccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCc
Q 041851           86 -NIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCE  125 (151)
Q Consensus        86 -~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~  125 (151)
                       .+..+++|+.|++++|.++.++. .+..+++|+.|++++|.
T Consensus       147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  188 (285)
T 1ozn_A          147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR  188 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence             24445555555555555543333 24444555555555543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.67  E-value=2.5e-15  Score=99.49  Aligned_cols=135  Identities=21%  Similarity=0.318  Sum_probs=103.2

Q ss_pred             cCCCCChhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      .+..+|..+  .+++++|++++|.++.++. .+..+++|+.+++++|.    +....+  ..+..+++|+++++++|.++
T Consensus        18 ~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~--~~~~~l~~L~~L~Ls~n~l~   89 (208)
T 2o6s_A           18 GRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK----LQSLPN--GVFNKLTSLTYLNLSTNQLQ   89 (208)
T ss_dssp             CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCCC
T ss_pred             CccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc----cCccCh--hhcCCCCCcCEEECCCCcCC
Confidence            456677554  4689999999999987765 46788999999999876    333333  45678899999999999998


Q ss_pred             ccCc-ccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccccCCCC----CCCcceEcccCCc
Q 041851           82 RLPE-NIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLSKL----PCKLHELDAHHCT  146 (151)
Q Consensus        82 ~~~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~----~~~l~~l~l~~~~  146 (151)
                      +++. .+..+++|++|++++|.++.++. .+..+++|+.|++++|. +..++..    +++|++|+++++.
T Consensus        90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A           90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC
Confidence            8654 46788999999999999886665 46788899999999985 4455532    4778888888754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.67  E-value=3e-16  Score=109.56  Aligned_cols=130  Identities=25%  Similarity=0.338  Sum_probs=74.9

Q ss_pred             ccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCcccc-ccccccCCCCCCcccEEEcccCCCCcc-Cccc
Q 041851           11 LGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSL-SLPITLSLDGLHTLTYLNLTDCGITRL-PENI   87 (151)
Q Consensus        11 ~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~   87 (151)
                      +..+++|++|++++|.+... +..+..+++|+.+++++|.    +.+ ..|  ..+..+++|+.+++++|.++++ +..+
T Consensus       122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~  195 (306)
T 2z66_A          122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS----FQENFLP--DIFTELRNLTFLDLSQCQLEQLSPTAF  195 (306)
T ss_dssp             TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE----EGGGEEC--SCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc----cccccch--hHHhhCcCCCEEECCCCCcCCcCHHHh
Confidence            44444455555555544422 2334445555555555443    222 234  5566677777777777777763 5566


Q ss_pred             CCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccccCCCC----CCCcceEcccCCc
Q 041851           88 GQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLSKL----PCKLHELDAHHCT  146 (151)
Q Consensus        88 ~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~----~~~l~~l~l~~~~  146 (151)
                      ..+++|+.|++++|.++.++. .+..+++|+.|++++|......+..    +++|+.|++++++
T Consensus       196 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             TTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             cCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            677777777777777775443 5566677777777777544433322    2467777777654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.66  E-value=1.1e-15  Score=115.38  Aligned_cols=135  Identities=22%  Similarity=0.275  Sum_probs=85.2

Q ss_pred             cCCCCChhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      ++..+|..+.  +++++|++++|.++.+++ .+..+++|+++++++|.    +.+..|  ..|..+++|++|++++|.++
T Consensus        22 ~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~----l~~i~~--~~~~~l~~L~~L~Ls~n~l~   93 (606)
T 3vq2_A           22 KLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE----IETIED--KAWHGLHHLSNLILTGNPIQ   93 (606)
T ss_dssp             CCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC----CCEECT--TTTTTCTTCCEEECTTCCCC
T ss_pred             CcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc----ccccCH--HHhhchhhcCEeECCCCccc
Confidence            4566666543  567777777777765543 66677777777777664    333344  55666777777777777776


Q ss_pred             cc-CcccCCCCCCCEEeCCCCCCccCC-cchhccCccCEEeccCCcccc-cCCCC---CCCcceEcccCC
Q 041851           82 RL-PENIGQLSSLEELDLQENNFERIP-ESITQRSKLGRLSLRYCERLQ-SLSKL---PCKLHELDAHHC  145 (151)
Q Consensus        82 ~~-~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~-~~~~~---~~~l~~l~l~~~  145 (151)
                      ++ |..++.+++|++|++++|.++.++ ..++.+++|++|++++|.... .+|..   +++|++|+++++
T Consensus        94 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A           94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN  163 (606)
T ss_dssp             CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred             ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence            63 556667777777777777766444 456666777777777764332 34432   356666666655

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.66  E-value=9.3e-16  Score=103.21  Aligned_cols=118  Identities=23%  Similarity=0.318  Sum_probs=101.7

Q ss_pred             cCCCC-ChhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851            3 HLQRL-PDELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI   80 (151)
Q Consensus         3 ~l~~l-p~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l   80 (151)
                      ++..+ |..+..+++|++|++++|.++.++. .+..+++|+.|++++|.    +....+  ..+..+++|+.|++++|.+
T Consensus        51 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~----l~~l~~--~~~~~l~~L~~L~Ls~N~l  124 (229)
T 3e6j_A           51 QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ----LTVLPS--AVFDRLVHLKELFMCCNKL  124 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCC
T ss_pred             ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc----CCccCh--hHhCcchhhCeEeccCCcc
Confidence            45555 5678899999999999999998875 56889999999999887    443334  5678899999999999999


Q ss_pred             CccCcccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcc
Q 041851           81 TRLPENIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCER  126 (151)
Q Consensus        81 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~  126 (151)
                      +.+|..+..+++|+.|++++|.++.++. .+..+++|+.+++++|+.
T Consensus       125 ~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          125 TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             CSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             cccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence            9999999999999999999999997765 577889999999999974

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.66  E-value=1.7e-15  Score=105.75  Aligned_cols=137  Identities=21%  Similarity=0.313  Sum_probs=114.8

Q ss_pred             cCCCCChhccCcccccccccccccceecCh--hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPS--SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI   80 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~--~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l   80 (151)
                      ++..+|..+..+++|++|++++|.++.++.  .+..+++|+.+++++|.    +....+  ..+..+++|+.+++++|.+
T Consensus        89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~--~~~~~l~~L~~L~l~~n~l  162 (306)
T 2z66_A           89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH----TRVAFN--GIFNGLSSLEVLKMAGNSF  162 (306)
T ss_dssp             SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC----CEECST--TTTTTCTTCCEEECTTCEE
T ss_pred             ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc----CCccch--hhcccCcCCCEEECCCCcc
Confidence            456678888999999999999999997653  68889999999999876    454555  6788899999999999998


Q ss_pred             Cc--cCcccCCCCCCCEEeCCCCCCccC-CcchhccCccCEEeccCCcccccCCC----CCCCcceEcccCCc
Q 041851           81 TR--LPENIGQLSSLEELDLQENNFERI-PESITQRSKLGRLSLRYCERLQSLSK----LPCKLHELDAHHCT  146 (151)
Q Consensus        81 ~~--~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~----~~~~l~~l~l~~~~  146 (151)
                      .+  .+..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|. +..++.    .+++|+.|++++|.
T Consensus       163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC
T ss_pred             ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC
Confidence            86  778899999999999999999955 6678889999999999986 444443    24789999999775

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.66  E-value=1.8e-15  Score=104.26  Aligned_cols=134  Identities=24%  Similarity=0.280  Sum_probs=71.4

Q ss_pred             CCCCChhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            4 LQRLPDELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         4 l~~lp~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      +.++|..+.  +++++|++++|.++.++. .+..+++|+.+++++|.    +....+  ..+..+++|+.+++++|.+++
T Consensus        19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~--~~~~~l~~L~~L~L~~n~l~~   90 (276)
T 2z62_A           19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE----IQTIED--GAYQSLSHLSTLILTGNPIQS   90 (276)
T ss_dssp             CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC----CCEECT--TTTTTCTTCCEEECTTCCCCE
T ss_pred             ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCc----CCccCH--HHccCCcCCCEEECCCCccCc
Confidence            444555432  356666666666665543 55666666666666554    222222  345555666666666666655


Q ss_pred             cC-cccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccc-cCCCC---CCCcceEcccCC
Q 041851           83 LP-ENIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQ-SLSKL---PCKLHELDAHHC  145 (151)
Q Consensus        83 ~~-~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~-~~~~~---~~~l~~l~l~~~  145 (151)
                      ++ ..+..+++|++|++++|.++.++. .+..+++|+.|++++|.... .+|..   +++|++|++++|
T Consensus        91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N  159 (276)
T 2z62_A           91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  159 (276)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence            32 345556666666666665554433 45555566666666553221 12321   245555555544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.66  E-value=8.6e-16  Score=102.82  Aligned_cols=118  Identities=19%  Similarity=0.243  Sum_probs=100.8

Q ss_pred             cCCCCC--hhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCC
Q 041851            3 HLQRLP--DELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCG   79 (151)
Q Consensus         3 ~l~~lp--~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~   79 (151)
                      ++..++  ..+..+++|++|++++|.++.+++ .+..+++|+.|++++|.    +....+  ..+..+++|+.|++++|.
T Consensus        43 ~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~----l~~~~~--~~~~~l~~L~~L~Ls~N~  116 (220)
T 2v70_A           43 EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR----LENVQH--KMFKGLESLKTLMLRSNR  116 (220)
T ss_dssp             CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC----CCCCCG--GGGTTCSSCCEEECTTSC
T ss_pred             cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc----cCccCH--hHhcCCcCCCEEECCCCc
Confidence            455553  347889999999999999997765 78999999999999887    444445  668899999999999999


Q ss_pred             CCcc-CcccCCCCCCCEEeCCCCCCccC-CcchhccCccCEEeccCCcc
Q 041851           80 ITRL-PENIGQLSSLEELDLQENNFERI-PESITQRSKLGRLSLRYCER  126 (151)
Q Consensus        80 l~~~-~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~~  126 (151)
                      ++++ +..+..+++|+.|++++|.++.+ |..+..+++|+.+++++|+.
T Consensus       117 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          117 ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            9985 67888999999999999999965 67888999999999999974

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.66  E-value=3.4e-15  Score=102.81  Aligned_cols=134  Identities=22%  Similarity=0.346  Sum_probs=107.4

Q ss_pred             CCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCcc
Q 041851            4 LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRL   83 (151)
Q Consensus         4 l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~   83 (151)
                      +..++ .+..+++|++|++++|.++.++ .+..+++|+++++++|.    +....+  ..+..+++|+.|++++|.++++
T Consensus        53 i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~----l~~~~~--~~~~~l~~L~~L~L~~n~l~~~  124 (272)
T 3rfs_A           53 IKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ----LQSLPN--GVFDKLTNLKELVLVENQLQSL  124 (272)
T ss_dssp             CCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC----CCCCCT--TTTTTCTTCCEEECTTSCCCCC
T ss_pred             ccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc----cCccCh--hHhcCCcCCCEEECCCCcCCcc
Confidence            44444 4678899999999999988764 67889999999999876    444444  5678899999999999999986


Q ss_pred             Cc-ccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccccCCC----CCCCcceEcccCCc
Q 041851           84 PE-NIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLSK----LPCKLHELDAHHCT  146 (151)
Q Consensus        84 ~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~----~~~~l~~l~l~~~~  146 (151)
                      +. .+..+++|++|++++|.++.++. .+..+++|+.|++++|. +..++.    .+++|+.|++++|.
T Consensus       125 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCc
Confidence            54 47889999999999999996665 46788999999999985 445553    24789999998764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=7.5e-16  Score=101.37  Aligned_cols=126  Identities=18%  Similarity=0.248  Sum_probs=107.8

Q ss_pred             cCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-cCcccCCC
Q 041851           12 GNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-LPENIGQL   90 (151)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~~~~l   90 (151)
                      ..+++|++|++++|.++.+| .+..+++|+.+++++|.    +.  .+  ..+..+++|+.+++++|.+++ .+..+..+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~----~~--~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l  111 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH----AT--NY--NPISGLSNLERLRIMGKDVTSDKIPNLSGL  111 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC----CS--CC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTC
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC----CC--cc--hhhhcCCCCCEEEeECCccCcccChhhcCC
Confidence            57889999999999999887 68899999999999774    22  12  457789999999999999997 77789999


Q ss_pred             CCCCEEeCCCCCCc-cCCcchhccCccCEEeccCCcccccCCCC--CCCcceEcccCCc
Q 041851           91 SSLEELDLQENNFE-RIPESITQRSKLGRLSLRYCERLQSLSKL--PCKLHELDAHHCT  146 (151)
Q Consensus        91 ~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~--~~~l~~l~l~~~~  146 (151)
                      ++|++|++++|.++ ..+..+..+++|+.|++++|..+..++..  +++|+.|++++|.
T Consensus       112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~  170 (197)
T 4ezg_A          112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG  170 (197)
T ss_dssp             TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC
T ss_pred             CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC
Confidence            99999999999998 56778899999999999999767777743  4889999998764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.65  E-value=2.5e-16  Score=106.47  Aligned_cols=38  Identities=16%  Similarity=0.352  Sum_probs=18.9

Q ss_pred             hccCccccccccccccc-ceecCh-hhhcCCCCCeeeccc
Q 041851           10 ELGNLEALWSLHAIGTA-IREVPS-SFFRLNNIDLLSFQR   47 (151)
Q Consensus        10 ~~~~l~~L~~L~l~~~~-i~~~~~-~~~~l~~L~~l~l~~   47 (151)
                      .+..+++|++|++++|. ++.+++ .+..+++|+.+++++
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~   89 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN   89 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEE
T ss_pred             HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCC
Confidence            34455555555555554 444433 344455555555554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=2e-16  Score=101.53  Aligned_cols=127  Identities=23%  Similarity=0.244  Sum_probs=105.0

Q ss_pred             cCcccccccccccccce--ecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-cCcccC
Q 041851           12 GNLEALWSLHAIGTAIR--EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-LPENIG   88 (151)
Q Consensus        12 ~~l~~L~~L~l~~~~i~--~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~~~   88 (151)
                      ...+++++|++++|.++  .+|..+..+++|+.+++++|.    +...    ..+..+++|+.+++++|.+++ ++..+.
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~----l~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~   92 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG----LISV----SNLPKLPKLKKLELSENRIFGGLDMLAE   92 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC----CCCC----SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC----CCCh----hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence            34578999999999998  788778889999999999876    3222    357788999999999999998 776677


Q ss_pred             CCCCCCEEeCCCCCCccCC--cchhccCccCEEeccCCcccccCCC-------CCCCcceEcccCCcc
Q 041851           89 QLSSLEELDLQENNFERIP--ESITQRSKLGRLSLRYCERLQSLSK-------LPCKLHELDAHHCTA  147 (151)
Q Consensus        89 ~l~~L~~L~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~~~-------~~~~l~~l~l~~~~~  147 (151)
                      .+++|++|++++|.++.++  ..+..+++|+.|++++|. +..++.       .+++|++|++.+|..
T Consensus        93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A           93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            7999999999999999776  678889999999999986 455554       348899999988863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=9.3e-17  Score=125.68  Aligned_cols=115  Identities=19%  Similarity=0.207  Sum_probs=62.3

Q ss_pred             CCCCChhccCccccccccccccccee------------------cChhhh--cCCCCCeeeccccccCCccccccccccC
Q 041851            4 LQRLPDELGNLEALWSLHAIGTAIRE------------------VPSSFF--RLNNIDLLSFQRSRGHKQMSLSLPITLS   63 (151)
Q Consensus         4 l~~lp~~~~~l~~L~~L~l~~~~i~~------------------~~~~~~--~l~~L~~l~l~~n~~~~~~~~~~~~~~~   63 (151)
                      +..+|..++++++|+.|++++|.++.                  +|..+.  .+++|+.|+++.|.    +.+..|  ..
T Consensus       437 L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~----l~~~iP--~~  510 (876)
T 4ecn_A          437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP----NMTQLP--DF  510 (876)
T ss_dssp             EEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT----TCCSCC--GG
T ss_pred             ccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC----CCccCh--HH
Confidence            33366666777777777777776665                  666544  66677777776554    333444  44


Q ss_pred             CCCCCcccEEEcccCC-CCc--cCcccCCC-------CCCCEEeCCCCCCccCCc--chhccCccCEEeccCC
Q 041851           64 LDGLHTLTYLNLTDCG-ITR--LPENIGQL-------SSLEELDLQENNFERIPE--SITQRSKLGRLSLRYC  124 (151)
Q Consensus        64 ~~~~~~L~~l~l~~~~-l~~--~~~~~~~l-------~~L~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n  124 (151)
                      ++.+++|+.|++++|. +++  +|..++.+       ++|+.|++++|.++.+|.  .++.+++|+.|++++|
T Consensus       511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N  583 (876)
T 4ecn_A          511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN  583 (876)
T ss_dssp             GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS
T ss_pred             HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC
Confidence            5555555555555554 443  33333222       255555555555444444  4444445555555444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=1e-15  Score=98.16  Aligned_cols=119  Identities=21%  Similarity=0.230  Sum_probs=100.7

Q ss_pred             CCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccC-
Q 041851            6 RLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLP-   84 (151)
Q Consensus         6 ~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~-   84 (151)
                      .+|..+..+++|++|++++|.++.+ ..+..+++|+.+++++|.    +....|  ..+..+++|+.+++++|.+++++ 
T Consensus        40 ~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~----l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~  112 (168)
T 2ell_A           40 KIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENR----IFGGLD--MLAEKLPNLTHLNLSGNKLKDIST  112 (168)
T ss_dssp             BCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCC----CCSCCC--HHHHHCTTCCEEECBSSSCCSSGG
T ss_pred             hHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCc----CchHHH--HHHhhCCCCCEEeccCCccCcchh
Confidence            7888889999999999999999877 668889999999999887    444455  55666899999999999999865 


Q ss_pred             -cccCCCCCCCEEeCCCCCCccCCc----chhccCccCEEeccCCcccccCCC
Q 041851           85 -ENIGQLSSLEELDLQENNFERIPE----SITQRSKLGRLSLRYCERLQSLSK  132 (151)
Q Consensus        85 -~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~~~L~~l~l~~n~~~~~~~~  132 (151)
                       ..+..+++|+.|++++|.++.++.    .+..+++|+.|++++|. ..++|.
T Consensus       113 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~  164 (168)
T 2ell_A          113 LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD  164 (168)
T ss_dssp             GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred             HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence             688899999999999999997776    67889999999999985 455553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.64  E-value=2.5e-15  Score=103.49  Aligned_cols=117  Identities=21%  Similarity=0.319  Sum_probs=85.9

Q ss_pred             cCCCCCh-hccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851            3 HLQRLPD-ELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI   80 (151)
Q Consensus         3 ~l~~lp~-~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l   80 (151)
                      ++..++. .+..+++|++|++++|.++.++. .+..+++|+.+++++|.    +....+  ..+..+++|+.+++++|.+
T Consensus        39 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~--~~~~~l~~L~~L~l~~n~l  112 (276)
T 2z62_A           39 PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP----IQSLAL--GAFSGLSSLQKLVAVETNL  112 (276)
T ss_dssp             CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC----CCEECT--TTTTTCTTCCEEECTTSCC
T ss_pred             cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc----cCccCh--hhhcCCccccEEECCCCCc
Confidence            4555554 67788889999999988886654 67788889999998776    443444  5667777788888888777


Q ss_pred             CccCc-ccCCCCCCCEEeCCCCCCcc--CCcchhccCccCEEeccCCc
Q 041851           81 TRLPE-NIGQLSSLEELDLQENNFER--IPESITQRSKLGRLSLRYCE  125 (151)
Q Consensus        81 ~~~~~-~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~L~~l~l~~n~  125 (151)
                      .+++. .+..+++|++|++++|.++.  +|..+..+++|+.|++++|.
T Consensus       113 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~  160 (276)
T 2z62_A          113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (276)
T ss_dssp             CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             cccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence            77443 56777788888888777764  56677777778888777774

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.64  E-value=1.5e-15  Score=109.27  Aligned_cols=116  Identities=22%  Similarity=0.340  Sum_probs=74.9

Q ss_pred             CCCCChh-ccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            4 LQRLPDE-LGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         4 l~~lp~~-~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      +..+|.. +..+++|++|++++|.++.+++ .+..+++|+.+++++|.    +....+  ..++.+++|+.|++++|.++
T Consensus        57 l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~--~~~~~l~~L~~L~L~~n~l~  130 (390)
T 3o6n_A           57 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA----IRYLPP--HVFQNVPLLTVLVLERNDLS  130 (390)
T ss_dssp             ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCCC
T ss_pred             hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC----CCcCCH--HHhcCCCCCCEEECCCCccC
Confidence            4445543 4566777777777777765543 56667777777777665    333334  55666777777777777777


Q ss_pred             ccCcc-cCCCCCCCEEeCCCCCCccC-CcchhccCccCEEeccCCc
Q 041851           82 RLPEN-IGQLSSLEELDLQENNFERI-PESITQRSKLGRLSLRYCE  125 (151)
Q Consensus        82 ~~~~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~  125 (151)
                      +++.. +..+++|++|++++|.++.+ +..+..+++|+.|++++|.
T Consensus       131 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  176 (390)
T 3o6n_A          131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR  176 (390)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC
T ss_pred             cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc
Confidence            76554 46677777777777777644 3346666777777777764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.64  E-value=2.4e-15  Score=100.63  Aligned_cols=118  Identities=19%  Similarity=0.304  Sum_probs=100.2

Q ss_pred             cCCCCCh-hccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851            3 HLQRLPD-ELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI   80 (151)
Q Consensus         3 ~l~~lp~-~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l   80 (151)
                      +|..+|. .+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.    +....+  ..|..+++|+.|++++|.+
T Consensus        43 ~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~----l~~l~~--~~f~~l~~L~~L~L~~N~l  116 (220)
T 2v9t_B           43 TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK----ITELPK--SLFEGLFSLQLLLLNANKI  116 (220)
T ss_dssp             CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCC
T ss_pred             cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc----CCccCH--hHccCCCCCCEEECCCCCC
Confidence            4566664 678899999999999999966 6789999999999999887    443333  5578899999999999999


Q ss_pred             Ccc-CcccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcc
Q 041851           81 TRL-PENIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCER  126 (151)
Q Consensus        81 ~~~-~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~  126 (151)
                      +++ +..+..+++|+.|++++|.++.++. .+..+++|+.+++++|+.
T Consensus       117 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          117 NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            995 5678899999999999999997665 578889999999999974

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.64  E-value=9.4e-16  Score=103.62  Aligned_cols=113  Identities=19%  Similarity=0.230  Sum_probs=62.1

Q ss_pred             CCCCCh-hccCccccccccccc-ccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCccc---EEEccc
Q 041851            4 LQRLPD-ELGNLEALWSLHAIG-TAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLT---YLNLTD   77 (151)
Q Consensus         4 l~~lp~-~~~~l~~L~~L~l~~-~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~---~l~l~~   77 (151)
                      ++.+|. .+..+++|++|++++ |.++.++. .+..+++|+.+++..|....     .|  . +..+++++   .+++++
T Consensus        68 l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-----lp--~-~~~l~~L~~L~~L~l~~  139 (239)
T 2xwt_C           68 LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-----FP--D-LTKVYSTDIFFILEITD  139 (239)
T ss_dssp             CCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-----CC--C-CTTCCBCCSEEEEEEES
T ss_pred             cceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-----cc--c-cccccccccccEEECCC
Confidence            556664 567778888888887 77776653 56677788888887765211     22  2 33344444   555555


Q ss_pred             C-CCCccCc-ccCCCCCCC-EEeCCCCCCccCCcchhccCccCEEeccCC
Q 041851           78 C-GITRLPE-NIGQLSSLE-ELDLQENNFERIPESITQRSKLGRLSLRYC  124 (151)
Q Consensus        78 ~-~l~~~~~-~~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n  124 (151)
                      | .+++++. .+..+++|+ .+++++|.++.+|......++|+.+++++|
T Consensus       140 N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n  189 (239)
T 2xwt_C          140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN  189 (239)
T ss_dssp             CTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred             CcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence            5 4444332 244455555 555555554444433222244555555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.64  E-value=4e-15  Score=106.28  Aligned_cols=135  Identities=20%  Similarity=0.225  Sum_probs=90.4

Q ss_pred             cCCCCChhccCcccccccccccccceecCh-hhh-cCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPS-SFF-RLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI   80 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~-~~~-~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l   80 (151)
                      ++..+|..+.  +.++.|++++|.++.++. .+. .+++|+.|++++|.    +....+  ..|..+++|+.|++++|.+
T Consensus        29 ~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~----i~~i~~--~~~~~l~~L~~L~Ls~N~l  100 (361)
T 2xot_A           29 QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH----LNFISS--EAFVPVPNLRYLDLSSNHL  100 (361)
T ss_dssp             CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC----CCEECT--TTTTTCTTCCEEECCSSCC
T ss_pred             CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc----CCccCh--hhccCCCCCCEEECCCCcC
Confidence            4666776543  357778888888776654 344 67778888887765    343334  5577777788888888877


Q ss_pred             CccCc-ccCCCCCCCEEeCCCCCCccC-CcchhccCccCEEeccCCcccccCCCC-------CCCcceEcccCCc
Q 041851           81 TRLPE-NIGQLSSLEELDLQENNFERI-PESITQRSKLGRLSLRYCERLQSLSKL-------PCKLHELDAHHCT  146 (151)
Q Consensus        81 ~~~~~-~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~-------~~~l~~l~l~~~~  146 (151)
                      +.++. .+..+++|+.|++++|.++.+ +..+..+++|+.|++++|. +..+|..       +++|+.|+++++.
T Consensus       101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A          101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC
Confidence            77443 566777788888887777744 4567777777788877774 4555531       4667777776653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.64  E-value=3.5e-15  Score=109.35  Aligned_cols=121  Identities=26%  Similarity=0.392  Sum_probs=78.6

Q ss_pred             cCCCCChhccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      ++..+|..+.  +++++|++++|.++.+ +..+..+++|+.|++++|.    +....+  ..+..+++|+.|++++|.++
T Consensus        65 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~----i~~~~~--~~~~~l~~L~~L~L~~n~l~  136 (452)
T 3zyi_A           65 GLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS----IRQIEV--GAFNGLASLNTLELFDNWLT  136 (452)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC----CCEECT--TTTTTCTTCCEEECCSSCCS
T ss_pred             CcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc----cCCcCh--hhccCcccCCEEECCCCcCC
Confidence            4556665443  5777788888877755 4567777778888887665    443444  56667777777777777777


Q ss_pred             ccCc-ccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccccCC
Q 041851           82 RLPE-NIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLS  131 (151)
Q Consensus        82 ~~~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~  131 (151)
                      .++. .+..+++|++|++++|.++.++. .+..+++|+.|++++|..++.++
T Consensus       137 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~  188 (452)
T 3zyi_A          137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS  188 (452)
T ss_dssp             BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence            7543 46667777777777777765544 45555666666666554444444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.63  E-value=4e-16  Score=120.39  Aligned_cols=119  Identities=17%  Similarity=0.233  Sum_probs=95.1

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      ++...|..+..++.|+.|++++|.+..+|..+..+++|+.|++++|.    +. .+|  ..++.+++|+.|++++|.++.
T Consensus       212 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~----l~-~lp--~~~~~l~~L~~L~Ls~N~l~~  284 (727)
T 4b8c_D          212 RMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS----LT-ELP--AEIKNLSNLRVLDLSHNRLTS  284 (727)
T ss_dssp             ----------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC----CS-CCC--GGGGGGTTCCEEECTTSCCSS
T ss_pred             ceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc----Cc-ccC--hhhhCCCCCCEEeCcCCcCCc
Confidence            34445677888899999999999998888878889999999999886    44 556  677888999999999999998


Q ss_pred             cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccc
Q 041851           83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQ  128 (151)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~  128 (151)
                      +|..++.+++|++|+|++|.++.+|..++.+++|+.|++++|...+
T Consensus       285 lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          285 LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             CCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             cChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence            8888999999999999999999888888899999999999987543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.63  E-value=1.4e-15  Score=113.57  Aligned_cols=136  Identities=22%  Similarity=0.290  Sum_probs=107.4

Q ss_pred             cCCCCChhccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      ++..+|..+.  +++++|++++|.++.+ |..+..+++|+++++++|.    +.+..+  +.+..+++|+.|++++|.++
T Consensus        16 ~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~----i~~~~~--~~~~~l~~L~~L~Ls~n~l~   87 (549)
T 2z81_A           16 SFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR----INTIEG--DAFYSLGSLEHLDLSDNHLS   87 (549)
T ss_dssp             CCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC----CCEECT--TTTTTCTTCCEEECTTSCCC
T ss_pred             ccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCC----cCccCh--hhccccccCCEEECCCCccC
Confidence            6778887654  7899999999999865 4578889999999999876    555555  67888999999999999998


Q ss_pred             ccCc-ccCCCCCCCEEeCCCCCCc--cCCcchhccCccCEEeccCCcccccCCC----CCCCcceEcccCCc
Q 041851           82 RLPE-NIGQLSSLEELDLQENNFE--RIPESITQRSKLGRLSLRYCERLQSLSK----LPCKLHELDAHHCT  146 (151)
Q Consensus        82 ~~~~-~~~~l~~L~~L~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~~~~~~~~----~~~~l~~l~l~~~~  146 (151)
                      +++. .++.+++|++|++++|.++  ..|..+..+++|+.|++++|..++.+|.    .+++|++|++++|.
T Consensus        88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~  159 (549)
T 2z81_A           88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS  159 (549)
T ss_dssp             SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence            8654 4889999999999999888  3466788888999999998875666653    23667777776543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.63  E-value=7.3e-15  Score=97.26  Aligned_cols=121  Identities=21%  Similarity=0.354  Sum_probs=99.6

Q ss_pred             cCCCCChh-ccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851            3 HLQRLPDE-LGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI   80 (151)
Q Consensus         3 ~l~~lp~~-~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l   80 (151)
                      ++..+|.. +..+++|++|++++|.++.++. .+..+++|+++++++|.    +....+  ..+..+++|+.+++++|.+
T Consensus        39 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~--~~~~~l~~L~~L~L~~N~l  112 (208)
T 2o6s_A           39 SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ----LQSLPN--GVFDKLTQLKELALNTNQL  112 (208)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCC
T ss_pred             ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc----CCccCH--hHhcCccCCCEEEcCCCcC
Confidence            45667654 6789999999999999997765 46789999999999886    443333  5578899999999999999


Q ss_pred             CccCc-ccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCccccc
Q 041851           81 TRLPE-NIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQS  129 (151)
Q Consensus        81 ~~~~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~  129 (151)
                      ++++. .+..+++|+.|++++|.++.++. .+..+++|+.+++++|+....
T Consensus       113 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  163 (208)
T 2o6s_A          113 QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  163 (208)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred             cccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC
Confidence            98665 47889999999999999997766 477889999999999875433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.63  E-value=2.2e-15  Score=111.98  Aligned_cols=135  Identities=20%  Similarity=0.189  Sum_probs=111.1

Q ss_pred             ccCCCCChhccCcccccccccccccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851            2 FHLQRLPDELGNLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI   80 (151)
Q Consensus         2 ~~l~~lp~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l   80 (151)
                      .++..+|..+.  +++++|++++|.++.++ ..+..+++|+++++++|.    +.+..|  +.+..+++|++|++++|.+
T Consensus        10 n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~--~~~~~l~~L~~L~Ls~N~l   81 (520)
T 2z7x_B           10 NGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNR----IQYLDI--SVFKFNQELEYLDLSHNKL   81 (520)
T ss_dssp             SCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC----CCEEEG--GGGTTCTTCCEEECCSSCC
T ss_pred             CCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCc----cCCcCh--HHhhcccCCCEEecCCCce
Confidence            36788898765  89999999999999776 578999999999999887    555556  7888999999999999999


Q ss_pred             CccCcccCCCCCCCEEeCCCCCCcc--CCcchhccCccCEEeccCCcccccCCCCCCCc--ceEcccCCc
Q 041851           81 TRLPENIGQLSSLEELDLQENNFER--IPESITQRSKLGRLSLRYCERLQSLSKLPCKL--HELDAHHCT  146 (151)
Q Consensus        81 ~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l--~~l~l~~~~  146 (151)
                      +++|..  .+++|++|++++|.++.  +|..++.+++|++|++++|......-..++++  +.|++++|.
T Consensus        82 ~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~  149 (520)
T 2z7x_B           82 VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGE  149 (520)
T ss_dssp             CEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECT
T ss_pred             eecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeeccc
Confidence            998766  89999999999999984  67889999999999999986433221233566  888887764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.62  E-value=7e-15  Score=102.99  Aligned_cols=109  Identities=22%  Similarity=0.313  Sum_probs=58.5

Q ss_pred             CCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCcc
Q 041851            4 LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRL   83 (151)
Q Consensus         4 l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~   83 (151)
                      +..+| .+..+++|++|++++|.++.++. +..+++|+.|++++|....     .   +.+..+++|+.|++++|.++++
T Consensus        53 i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-----~---~~~~~l~~L~~L~l~~n~l~~~  122 (308)
T 1h6u_A           53 VTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-----V---SAIAGLQSIKTLDLTSTQITDV  122 (308)
T ss_dssp             CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-----C---GGGTTCTTCCEEECTTSCCCCC
T ss_pred             ccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-----c---hhhcCCCCCCEEECCCCCCCCc
Confidence            44455 45666777777777777666554 6666677777776654211     1   1244455555555555555544


Q ss_pred             CcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCC
Q 041851           84 PENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYC  124 (151)
Q Consensus        84 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n  124 (151)
                      +. +..+++|+.|++++|.++.++. +..+++|+.|++++|
T Consensus       123 ~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n  161 (308)
T 1h6u_A          123 TP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA  161 (308)
T ss_dssp             GG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS
T ss_pred             hh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC
Confidence            32 4445555555555555444333 444444555555444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.62  E-value=3.3e-15  Score=113.02  Aligned_cols=116  Identities=22%  Similarity=0.340  Sum_probs=80.1

Q ss_pred             CCCCChh-ccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            4 LQRLPDE-LGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         4 l~~lp~~-~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      +..+|.. +..+++|++|++++|.++.+++ .+..+++|+.|++++|.    +.+..+  ..++.+++|+.|++++|.++
T Consensus        63 l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~--~~~~~l~~L~~L~L~~n~l~  136 (597)
T 3oja_B           63 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA----IRYLPP--HVFQNVPLLTVLVLERNDLS  136 (597)
T ss_dssp             ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCCC
T ss_pred             CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc----CCCCCH--HHHcCCCCCCEEEeeCCCCC
Confidence            3445543 4567777788888777775543 67777778888877665    444444  55677777888888888777


Q ss_pred             ccCcc-cCCCCCCCEEeCCCCCCccC-CcchhccCccCEEeccCCc
Q 041851           82 RLPEN-IGQLSSLEELDLQENNFERI-PESITQRSKLGRLSLRYCE  125 (151)
Q Consensus        82 ~~~~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~  125 (151)
                      ++|.. ++.+++|++|++++|.++.+ |..+..+++|+.|++++|.
T Consensus       137 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  182 (597)
T 3oja_B          137 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR  182 (597)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred             CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence            76654 46777888888888777744 3356777778888887774

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.62  E-value=3.3e-15  Score=96.63  Aligned_cols=127  Identities=17%  Similarity=0.176  Sum_probs=104.1

Q ss_pred             hccCcccccccccccccceecChhhhcCC-CCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCccc-
Q 041851           10 ELGNLEALWSLHAIGTAIREVPSSFFRLN-NIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENI-   87 (151)
Q Consensus        10 ~~~~l~~L~~L~l~~~~i~~~~~~~~~l~-~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~-   87 (151)
                      .+..+.++++|++++|.++.++. +..+. +|+.+++++|.    +.+.    +.+..+++|+.+++++|.++++++.+ 
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~----l~~~----~~l~~l~~L~~L~Ls~N~l~~~~~~~~   84 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE----IRKL----DGFPLLRRLKTLLVNNNRICRIGEGLD   84 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC----CCEE----CCCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred             hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC----CCcc----cccccCCCCCEEECCCCcccccCcchh
Confidence            35678899999999999997765 44554 99999999886    3322    35778999999999999999977554 


Q ss_pred             CCCCCCCEEeCCCCCCccCCc--chhccCccCEEeccCCcccccCCCC-------CCCcceEcccCCc
Q 041851           88 GQLSSLEELDLQENNFERIPE--SITQRSKLGRLSLRYCERLQSLSKL-------PCKLHELDAHHCT  146 (151)
Q Consensus        88 ~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~-------~~~l~~l~l~~~~  146 (151)
                      ..+++|++|++++|.++.+|.  .+..+++|+.+++++|+ +..+|..       +++|+.|+++++.
T Consensus        85 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           85 QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             hcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            889999999999999998887  78889999999999996 4566652       4889999988765

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.62  E-value=1.7e-15  Score=114.44  Aligned_cols=130  Identities=18%  Similarity=0.222  Sum_probs=77.7

Q ss_pred             hccCccccccccccccccee-cChhhhcCCCCCeeeccccccCCcccc-ccccccCCCCCCcccEEEcccCCCCc-cCcc
Q 041851           10 ELGNLEALWSLHAIGTAIRE-VPSSFFRLNNIDLLSFQRSRGHKQMSL-SLPITLSLDGLHTLTYLNLTDCGITR-LPEN   86 (151)
Q Consensus        10 ~~~~l~~L~~L~l~~~~i~~-~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~   86 (151)
                      .+..+++|++|++++|.+.. .|..+..+++|+.+++++|.    +.+ ..|  ..++.+++|+.+++++|.+++ .+..
T Consensus       419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~  492 (606)
T 3vq2_A          419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS----FKDNTLS--NVFANTTNLTFLDLSKCQLEQISWGV  492 (606)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE----EGGGEEC--SCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred             hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc----CCCcchH--HhhccCCCCCEEECCCCcCCccChhh
Confidence            34445555555555555542 23344455555555555443    222 134  556677777777777777776 4456


Q ss_pred             cCCCCCCCEEeCCCCCCcc-CCcchhccCccCEEeccCCcccccCCCCC----CCcceEcccCCc
Q 041851           87 IGQLSSLEELDLQENNFER-IPESITQRSKLGRLSLRYCERLQSLSKLP----CKLHELDAHHCT  146 (151)
Q Consensus        87 ~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~~~~----~~l~~l~l~~~~  146 (151)
                      +..+++|+.|++++|.++. .|..+..+++|+.|++++|. +..+|..+    ++|+.+++++++
T Consensus       493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred             hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence            6777777777777777774 35566777777777777774 44555422    357777776644

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.61  E-value=8.5e-15  Score=110.57  Aligned_cols=135  Identities=20%  Similarity=0.194  Sum_probs=94.8

Q ss_pred             cCCCCChhccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      ++..+|..+.  +.+++|++++|.++.+ |..+..+++|+++++++|.    +....|  ..|..+++|+.|++++|.++
T Consensus        23 ~l~~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~----i~~~~~--~~~~~l~~L~~L~Ls~n~l~   94 (606)
T 3t6q_A           23 GLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ----IYWIHE--DTFQSQHRLDTLVLTANPLI   94 (606)
T ss_dssp             CCSSCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC----CCEECT--TTTTTCTTCCEEECTTCCCS
T ss_pred             CcccCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCc----cceeCh--hhccCccccCeeeCCCCccc
Confidence            4566776554  3678888888888755 4577778888888888765    444455  66777888888888888877


Q ss_pred             c-cCcccCCCCCCCEEeCCCCCCccC-CcchhccCccCEEeccCCcccc-cCCCC--CCCcceEcccCC
Q 041851           82 R-LPENIGQLSSLEELDLQENNFERI-PESITQRSKLGRLSLRYCERLQ-SLSKL--PCKLHELDAHHC  145 (151)
Q Consensus        82 ~-~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~~~~-~~~~~--~~~l~~l~l~~~  145 (151)
                      + .|..++.+++|++|++++|.++.+ +..++.+++|++|++++|.... ..|..  +++|++|+++++
T Consensus        95 ~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  163 (606)
T 3t6q_A           95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN  163 (606)
T ss_dssp             EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS
T ss_pred             ccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC
Confidence            7 456777788888888888877755 4567777788888888775332 22332  367777777765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=2.2e-15  Score=94.79  Aligned_cols=122  Identities=20%  Similarity=0.247  Sum_probs=101.8

Q ss_pred             Ccccccccccccccce--ecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-cCcccCC
Q 041851           13 NLEALWSLHAIGTAIR--EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-LPENIGQ   89 (151)
Q Consensus        13 ~l~~L~~L~l~~~~i~--~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~~~~   89 (151)
                      ..++++.|++++|.++  .+|..+..+++|+.+++++|.    +...    ..++.+++|+.+++++|.+++ +|..+..
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~----l~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~   86 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG----LTSI----ANLPKLNKLKKLELSDNRVSGGLEVLAEK   86 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC----CCCC----TTCCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC----CCCc----hhhhcCCCCCEEECCCCcccchHHHHhhh
Confidence            4578999999999998  788878899999999999886    3222    357788999999999999998 7777777


Q ss_pred             CCCCCEEeCCCCCCccCC--cchhccCccCEEeccCCcccccCCC----C---CCCcceEccc
Q 041851           90 LSSLEELDLQENNFERIP--ESITQRSKLGRLSLRYCERLQSLSK----L---PCKLHELDAH  143 (151)
Q Consensus        90 l~~L~~L~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~~~----~---~~~l~~l~l~  143 (151)
                      +++|++|++++|.++.++  ..+..+++|+.+++++|. +..++.    .   +++|+.|+++
T Consensus        87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence            999999999999999764  678899999999999995 555554    1   3788888875

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.61  E-value=4.1e-15  Score=103.44  Aligned_cols=109  Identities=25%  Similarity=0.368  Sum_probs=61.8

Q ss_pred             CCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCcc
Q 041851            4 LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRL   83 (151)
Q Consensus         4 l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~   83 (151)
                      +..++ .+..+++|++|++++|.++.+++ +..+++|+.+++++|.    +.. .   +.+..+++|+.|++++|.++++
T Consensus        58 i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~----l~~-~---~~l~~l~~L~~L~L~~n~i~~~  127 (291)
T 1h6t_A           58 IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK----VKD-L---SSLKDLKKLKSLSLEHNGISDI  127 (291)
T ss_dssp             CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC----CCC-G---GGGTTCTTCCEEECTTSCCCCC
T ss_pred             cccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc----CCC-C---hhhccCCCCCEEECCCCcCCCC
Confidence            44454 35667777777777777776554 6667777777777664    211 1   2244555566666666655554


Q ss_pred             CcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCC
Q 041851           84 PENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYC  124 (151)
Q Consensus        84 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n  124 (151)
                      + .+..+++|+.|++++|.++.+ ..+..+++|+.|++++|
T Consensus       128 ~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N  166 (291)
T 1h6t_A          128 N-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN  166 (291)
T ss_dssp             G-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS
T ss_pred             h-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC
Confidence            2 344555555555555555544 33445555555555555

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.61  E-value=7.8e-15  Score=102.73  Aligned_cols=130  Identities=22%  Similarity=0.310  Sum_probs=75.2

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      ++..++. +..+++|++|++++|.++.++ .+..+++|+.|++++|.    +.. .+   .+..+++|+.|++++|.+++
T Consensus        74 ~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~----l~~-~~---~l~~l~~L~~L~l~~n~l~~  143 (308)
T 1h6u_A           74 QITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQ----ITD-VT---PLAGLSNLQVLYLDLNQITN  143 (308)
T ss_dssp             CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSC----CCC-CG---GGTTCTTCCEEECCSSCCCC
T ss_pred             cCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCC----CCC-ch---hhcCCCCCCEEECCCCccCc
Confidence            4555665 677778888888887777654 46677777777777665    221 12   24555666666666666655


Q ss_pred             cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC--CCCCcceEcccCC
Q 041851           83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK--LPCKLHELDAHHC  145 (151)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~--~~~~l~~l~l~~~  145 (151)
                      ++. +..+++|+.|++++|.++.++. +..+++|+.|++++|. +..++.  .+++|++|++++|
T Consensus       144 ~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          144 ISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISPLASLPNLIEVHLKNN  205 (308)
T ss_dssp             CGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECTTS
T ss_pred             Ccc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChhhcCCCCCCEEEccCC
Confidence            443 5555666666666665554443 4555556666665553 333332  1244555555544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.61  E-value=6.5e-15  Score=102.37  Aligned_cols=119  Identities=25%  Similarity=0.247  Sum_probs=103.3

Q ss_pred             ccCCCCChhccCcccccccccccccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851            2 FHLQRLPDELGNLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI   80 (151)
Q Consensus         2 ~~l~~lp~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l   80 (151)
                      .++..+|..+..+++|++|++++|.++.++ ..+..+++|+.|++++|.    +....+  ..+..+++|+.|++++|.+
T Consensus        87 N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~----l~~~~~--~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE----LKTLPP--GLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC----CCCCCT--TTTTTCTTCCEEECTTSCC
T ss_pred             CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC----CCccCh--hhcccccCCCEEECCCCcC
Confidence            356788888899999999999999999776 468899999999999887    443334  5678899999999999999


Q ss_pred             CccCcc-cCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcc
Q 041851           81 TRLPEN-IGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCER  126 (151)
Q Consensus        81 ~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~  126 (151)
                      ++++.. +..+++|+.|++++|.++.+|..+....+|+.+++++|+.
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             CccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence            997764 5679999999999999999999888889999999999873

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.61  E-value=6.8e-15  Score=110.46  Aligned_cols=134  Identities=19%  Similarity=0.176  Sum_probs=109.4

Q ss_pred             cCCCCChhccCcccccccccccccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      ++.++|..+.  +++++|++++|.++.++ ..+..+++|+++++++|.    +.+..|  +.+..+++|++|++++|.++
T Consensus        42 ~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~--~~~~~l~~L~~L~Ls~N~l~  113 (562)
T 3a79_B           42 NLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR----IRSLDF--HVFLFNQDLEYLDVSHNRLQ  113 (562)
T ss_dssp             CCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC----CCEECT--TTTTTCTTCCEEECTTSCCC
T ss_pred             CCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCC----CCcCCH--HHhCCCCCCCEEECCCCcCC
Confidence            5778887664  89999999999999776 488999999999999886    555556  77889999999999999999


Q ss_pred             ccCcccCCCCCCCEEeCCCCCCccC--CcchhccCccCEEeccCCcccccCCCCCCCc--ceEcccCCc
Q 041851           82 RLPENIGQLSSLEELDLQENNFERI--PESITQRSKLGRLSLRYCERLQSLSKLPCKL--HELDAHHCT  146 (151)
Q Consensus        82 ~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l--~~l~l~~~~  146 (151)
                      ++|..  .+++|++|++++|.++.+  |..++.+++|++|++++|.....--..+.++  +.|+++++.
T Consensus       114 ~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          114 NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESS
T ss_pred             ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeeccc
Confidence            98866  899999999999999865  4689999999999999986432211223455  888887764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.61  E-value=1e-14  Score=100.09  Aligned_cols=130  Identities=22%  Similarity=0.246  Sum_probs=83.2

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      ++..+| .+..+++|++|++++|.++.+++ +..+++|+.+++++|.    +.+ .+  . +.. ++|+.|++++|.+++
T Consensus        52 ~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~----l~~-l~--~-~~~-~~L~~L~L~~N~l~~  120 (263)
T 1xeu_A           52 NIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR----LKN-LN--G-IPS-ACLSRLFLDNNELRD  120 (263)
T ss_dssp             CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC----CSC-CT--T-CCC-SSCCEEECCSSCCSB
T ss_pred             Ccccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc----cCC-cC--c-ccc-CcccEEEccCCccCC
Confidence            345555 45666777777777777766655 6667777777777665    221 22  1 222 667777777777776


Q ss_pred             cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC--CCCCcceEcccCCc
Q 041851           83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK--LPCKLHELDAHHCT  146 (151)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~--~~~~l~~l~l~~~~  146 (151)
                      ++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|. +..++.  .+++|+.|++++++
T Consensus       121 ~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          121 TD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTGGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             SG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCTTSTTCCCCCEEEEEEEE
T ss_pred             Ch-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchHHhccCCCCCEEeCCCCc
Confidence            54 4677778888888888777665 56777788888888775 333332  23667777776543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.61  E-value=4.8e-15  Score=112.91  Aligned_cols=130  Identities=15%  Similarity=0.193  Sum_probs=65.4

Q ss_pred             CcccccccccccccceecChh-hhcCCCCCeeeccccccCCc---------------------------cccccccccCC
Q 041851           13 NLEALWSLHAIGTAIREVPSS-FFRLNNIDLLSFQRSRGHKQ---------------------------MSLSLPITLSL   64 (151)
Q Consensus        13 ~l~~L~~L~l~~~~i~~~~~~-~~~l~~L~~l~l~~n~~~~~---------------------------~~~~~~~~~~~   64 (151)
                      .+++|++|++++|.++.+|.. +..+++|+.+++++|.....                           +. .+|  ..+
T Consensus       431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp--~~~  507 (636)
T 4eco_A          431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLS--DDF  507 (636)
T ss_dssp             CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCC--GGG
T ss_pred             cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccC--hhh
Confidence            455666666666666655543 23355566666655542210                           11 222  233


Q ss_pred             C--CCCcccEEEcccCCCCccCcccCCCCCCCEEeCC------CCCCc-cCCcchhccCccCEEeccCCcccccCCC-CC
Q 041851           65 D--GLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQ------ENNFE-RIPESITQRSKLGRLSLRYCERLQSLSK-LP  134 (151)
Q Consensus        65 ~--~~~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~------~n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~-~~  134 (151)
                      .  .+++|+.|++++|.++++|..++.+++|+.|+++      +|.+. .+|..+..+++|+.|++++|.. +.+|. ..
T Consensus       508 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~  586 (636)
T 4eco_A          508 RATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT  586 (636)
T ss_dssp             STTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred             hhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence            2  4555555555555555555555555555555552      23333 4455555555555555555543 55554 23


Q ss_pred             CCcceEcccCCc
Q 041851          135 CKLHELDAHHCT  146 (151)
Q Consensus       135 ~~l~~l~l~~~~  146 (151)
                      ++|+.|++++|+
T Consensus       587 ~~L~~L~Ls~N~  598 (636)
T 4eco_A          587 PNISVLDIKDNP  598 (636)
T ss_dssp             TTCCEEECCSCT
T ss_pred             CcCCEEECcCCC
Confidence            556666665553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=7.4e-15  Score=115.08  Aligned_cols=126  Identities=14%  Similarity=0.206  Sum_probs=71.5

Q ss_pred             CcccccccccccccceecChhhhcC--------CCCCeeeccccccCCccccccccccCCC--CCCcccEEEcccCCCCc
Q 041851           13 NLEALWSLHAIGTAIREVPSSFFRL--------NNIDLLSFQRSRGHKQMSLSLPITLSLD--GLHTLTYLNLTDCGITR   82 (151)
Q Consensus        13 ~l~~L~~L~l~~~~i~~~~~~~~~l--------~~L~~l~l~~n~~~~~~~~~~~~~~~~~--~~~~L~~l~l~~~~l~~   82 (151)
                      .+++|+.|++++|.++.+|..+...        ++|+.|+++.|.    +. .+|  ..+.  .+++|+.|++++|.+++
T Consensus       695 ~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~----L~-~lp--~~l~~~~l~~L~~L~Ls~N~L~~  767 (876)
T 4ecn_A          695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK----LT-SLS--DDFRATTLPYLSNMDVSYNCFSS  767 (876)
T ss_dssp             TTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC----CC-CCC--GGGSTTTCTTCCEEECCSSCCSS
T ss_pred             cCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC----Cc-cch--HHhhhccCCCcCEEEeCCCCCCc
Confidence            4455555555555555444322221        145555555443    22 233  3343  56666666666666666


Q ss_pred             cCcccCCCCCCCEEeCCC------CCCc-cCCcchhccCccCEEeccCCcccccCCC-CCCCcceEcccCCc
Q 041851           83 LPENIGQLSSLEELDLQE------NNFE-RIPESITQRSKLGRLSLRYCERLQSLSK-LPCKLHELDAHHCT  146 (151)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~------n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~-~~~~l~~l~l~~~~  146 (151)
                      +|..++.+++|+.|++++      |.+. .+|..+..+++|+.|++++|.. +.+|. ..++|+.|++++|+
T Consensus       768 lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~  838 (876)
T 4ecn_A          768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNP  838 (876)
T ss_dssp             CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCT
T ss_pred             cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCC
Confidence            666666666666666654      4444 5566666667777777777653 66665 34667777777665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.61  E-value=1.3e-14  Score=107.83  Aligned_cols=132  Identities=17%  Similarity=0.226  Sum_probs=103.3

Q ss_pred             CChhccCccccccccccccccee---cChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-
Q 041851            7 LPDELGNLEALWSLHAIGTAIRE---VPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-   82 (151)
Q Consensus         7 lp~~~~~l~~L~~L~l~~~~i~~---~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-   82 (151)
                      +|..+..+++|++|++++|.++.   +|..+..+++|+.+++++|.    +.+..|. ..+..+++|+.+++++|.+++ 
T Consensus       340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~----l~~~l~~-~~~~~l~~L~~L~Ls~N~l~~~  414 (520)
T 2z7x_B          340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS----VSYDEKK-GDCSWTKSLLSLNMSSNILTDT  414 (520)
T ss_dssp             TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC----CBCCGGG-CSCCCCTTCCEEECCSSCCCGG
T ss_pred             hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc----CCccccc-chhccCccCCEEECcCCCCCcc
Confidence            56777888888888888888874   34567788888888888776    4443441 346778899999999999876 


Q ss_pred             cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCC----CCCcceEcccCCc
Q 041851           83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKL----PCKLHELDAHHCT  146 (151)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~----~~~l~~l~l~~~~  146 (151)
                      .+..+.  ++|+.|++++|.++.+|..+..+++|+.|++++|. +..+|..    +++|+.|++++++
T Consensus       415 ~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          415 IFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             GGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCc-CCccCHHHhccCCcccEEECcCCC
Confidence            554443  79999999999999999888899999999999985 5677753    3778999998765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.60  E-value=8.3e-15  Score=105.41  Aligned_cols=125  Identities=14%  Similarity=0.154  Sum_probs=103.0

Q ss_pred             cccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCCCCC
Q 041851           14 LEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSL   93 (151)
Q Consensus        14 l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L   93 (151)
                      .++|+.|++++|.++.. +.+..+++|+.+++++|.    +.+..+  ..+..+++|+.+++++|.+++++..+..+++|
T Consensus       225 ~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~----l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L  297 (390)
T 3o6n_A          225 NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNE----LEKIMY--HPFVKMQRLERLYISNNRLVALNLYGQPIPTL  297 (390)
T ss_dssp             CSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC----CCEEES--GGGTTCSSCCEEECCSSCCCEEECSSSCCTTC
T ss_pred             cccccEEECCCCCCccc-HHHcCCCCccEEECCCCc----CCCcCh--hHccccccCCEEECCCCcCcccCcccCCCCCC
Confidence            35788888888887765 457788999999999876    555556  77888999999999999999887777889999


Q ss_pred             CEEeCCCCCCccCCcchhccCccCEEeccCCcccccCC-CCCCCcceEcccCCc
Q 041851           94 EELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLS-KLPCKLHELDAHHCT  146 (151)
Q Consensus        94 ~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~l~~l~l~~~~  146 (151)
                      +.|++++|.++.+|..+..+++|+.|++++|. +..++ ..+++|+.|++++++
T Consensus       298 ~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          298 KVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHND  350 (390)
T ss_dssp             CEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSSC
T ss_pred             CEEECCCCcceecCccccccCcCCEEECCCCc-cceeCchhhccCCEEEcCCCC
Confidence            99999999999888888889999999999986 44444 456889999998764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.60  E-value=1.2e-14  Score=106.13  Aligned_cols=113  Identities=28%  Similarity=0.409  Sum_probs=54.6

Q ss_pred             CCCCChhccCcccccccccccccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            4 LQRLPDELGNLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         4 l~~lp~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      +..+|..+.  ++++.|++++|.++.++ ..+..+++|+.|++++|.    +....+  ..|..+++|+.|++++|.+++
T Consensus        55 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~----i~~i~~--~~~~~l~~L~~L~L~~n~l~~  126 (440)
T 3zyj_A           55 LREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH----IRTIEI--GAFNGLANLNTLELFDNRLTT  126 (440)
T ss_dssp             CSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC----CCEECG--GGGTTCSSCCEEECCSSCCSS
T ss_pred             cCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc----CCccCh--hhccCCccCCEEECCCCcCCe
Confidence            445554432  45555566655555433 345555555555555544    222222  344455555555555555555


Q ss_pred             cCc-ccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCC
Q 041851           83 LPE-NIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYC  124 (151)
Q Consensus        83 ~~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n  124 (151)
                      ++. .+..+++|++|++++|.++.++. .+..+++|+.|++++|
T Consensus       127 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~  170 (440)
T 3zyj_A          127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL  170 (440)
T ss_dssp             CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC
T ss_pred             eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCC
Confidence            332 34455555555555555543332 3334444444444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.60  E-value=5.4e-15  Score=108.89  Aligned_cols=115  Identities=24%  Similarity=0.371  Sum_probs=60.7

Q ss_pred             CCCC-ChhccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            4 LQRL-PDELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         4 l~~l-p~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      +..+ |..+..+++|++|++++|.++.+ |..+..+++|+.|++++|.    +....+  ..+..+++|+.|++++|.+.
T Consensus        44 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~--~~~~~l~~L~~L~Ls~n~i~  117 (477)
T 2id5_A           44 IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR----LKLIPL--GVFTGLSNLTKLDISENKIV  117 (477)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC----CCSCCT--TSSTTCTTCCEEECTTSCCC
T ss_pred             cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc----CCccCc--ccccCCCCCCEEECCCCccc
Confidence            4444 34566777777777777777644 4566667777777777664    222222  33445555555555555555


Q ss_pred             c-cCcccCCCCCCCEEeCCCCCCcc-CCcchhccCccCEEeccCC
Q 041851           82 R-LPENIGQLSSLEELDLQENNFER-IPESITQRSKLGRLSLRYC  124 (151)
Q Consensus        82 ~-~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~L~~l~l~~n  124 (151)
                      + .+..+..+++|+.|++++|.++. .+..+..+++|+.|++++|
T Consensus       118 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  162 (477)
T 2id5_A          118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC  162 (477)
T ss_dssp             EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred             cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence            4 23344445555555555554442 2223444444444444444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=7.5e-16  Score=96.99  Aligned_cols=110  Identities=24%  Similarity=0.300  Sum_probs=95.2

Q ss_pred             CCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccC-
Q 041851            6 RLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLP-   84 (151)
Q Consensus         6 ~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~-   84 (151)
                      .+|..+..+++|++|++++|.++.+ ..+..+++|+.+++++|.    +.+..|  ..+..+++|+.+++++|.+++++ 
T Consensus        33 ~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~----i~~~~~--~~~~~l~~L~~L~ls~N~i~~~~~  105 (149)
T 2je0_A           33 KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR----VSGGLE--VLAEKCPNLTHLNLSGNKIKDLST  105 (149)
T ss_dssp             BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC----CCSCTH--HHHHHCTTCCEEECTTSCCCSHHH
T ss_pred             HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc----ccchHH--HHhhhCCCCCEEECCCCcCCChHH
Confidence            7888889999999999999999877 668889999999999887    444455  55667899999999999999854 


Q ss_pred             -cccCCCCCCCEEeCCCCCCccCCc----chhccCccCEEecc
Q 041851           85 -ENIGQLSSLEELDLQENNFERIPE----SITQRSKLGRLSLR  122 (151)
Q Consensus        85 -~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~~~L~~l~l~  122 (151)
                       ..++.+++|++|++++|.++..+.    .+..+++|+.|+++
T Consensus       106 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          106 IEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             HHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence             788999999999999999997765    67889999999886

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.59  E-value=3.7e-15  Score=112.58  Aligned_cols=119  Identities=20%  Similarity=0.297  Sum_probs=102.0

Q ss_pred             ccCCCCC-hhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCC
Q 041851            2 FHLQRLP-DELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCG   79 (151)
Q Consensus         2 ~~l~~lp-~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~   79 (151)
                      .+|..+| ..|..+++|++|++++|.++.+++ .|..+++|++|++++|+    +....+  ..|..+++|+.|++++|.
T Consensus        62 N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~----l~~l~~--~~f~~L~~L~~L~Ls~N~  135 (635)
T 4g8a_A           62 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP----IQSLAL--GAFSGLSSLQKLVAVETN  135 (635)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC----CCEECG--GGGTTCTTCCEEECTTSC
T ss_pred             CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc----CCCCCH--HHhcCCCCCCEEECCCCc
Confidence            3567777 468999999999999999998765 68899999999999887    443334  568899999999999999


Q ss_pred             CCccCc-ccCCCCCCCEEeCCCCCCc--cCCcchhccCccCEEeccCCcc
Q 041851           80 ITRLPE-NIGQLSSLEELDLQENNFE--RIPESITQRSKLGRLSLRYCER  126 (151)
Q Consensus        80 l~~~~~-~~~~l~~L~~L~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~~  126 (151)
                      +++++. .++.+++|++|++++|.++  ..|..+..+++|++|++++|..
T Consensus       136 l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          136 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence            999664 6889999999999999987  4577888999999999999864

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.59  E-value=2.4e-14  Score=99.57  Aligned_cols=131  Identities=24%  Similarity=0.271  Sum_probs=93.5

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      ++..++. +..+++|++|++++|.++.++. +..+++|+.+++++|.    +...    +.+..+++|+.|++++|.+++
T Consensus        79 ~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~----i~~~----~~l~~l~~L~~L~l~~n~l~~  148 (291)
T 1h6t_A           79 KLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNG----ISDI----NGLVHLPQLESLYLGNNKITD  148 (291)
T ss_dssp             CCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSC----CCCC----GGGGGCTTCCEEECCSSCCCC
T ss_pred             ccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCc----CCCC----hhhcCCCCCCEEEccCCcCCc
Confidence            4555665 7778888888888888776654 7778888888888765    2221    245567788888888888877


Q ss_pred             cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC--CCCCcceEcccCCc
Q 041851           83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK--LPCKLHELDAHHCT  146 (151)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~--~~~~l~~l~l~~~~  146 (151)
                      + ..+..+++|+.|++++|.++.++. +..+++|+.|++++|. +..++.  .+++|+.|++++++
T Consensus       149 ~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~-i~~l~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          149 I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEEEE
T ss_pred             c-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCc-CCCChhhccCCCCCEEECcCCc
Confidence            6 467778888888888888876655 7777888888888874 455553  23677777777654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.59  E-value=5e-15  Score=105.78  Aligned_cols=137  Identities=22%  Similarity=0.259  Sum_probs=107.8

Q ss_pred             cCCCCChh-cc-CcccccccccccccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCC
Q 041851            3 HLQRLPDE-LG-NLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCG   79 (151)
Q Consensus         3 ~l~~lp~~-~~-~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~   79 (151)
                      +|..++.. +. .+++|++|++++|.++.++ ..+..+++|+.|++++|.    +....+  ..|..+++|+.|++++|.
T Consensus        50 ~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~----l~~~~~--~~~~~l~~L~~L~L~~N~  123 (361)
T 2xot_A           50 NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH----LHTLDE--FLFSDLQALEVLLLYNNH  123 (361)
T ss_dssp             CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC----CCEECT--TTTTTCTTCCEEECCSSC
T ss_pred             CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc----CCcCCH--HHhCCCcCCCEEECCCCc
Confidence            45666644 44 8999999999999999776 468899999999999887    444444  568889999999999999


Q ss_pred             CCcc-CcccCCCCCCCEEeCCCCCCccCCcch----hccCccCEEeccCCcccccCCC-C---CCC--cceEcccCCc
Q 041851           80 ITRL-PENIGQLSSLEELDLQENNFERIPESI----TQRSKLGRLSLRYCERLQSLSK-L---PCK--LHELDAHHCT  146 (151)
Q Consensus        80 l~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~~L~~l~l~~n~~~~~~~~-~---~~~--l~~l~l~~~~  146 (151)
                      ++++ +..+..+++|+.|++++|.++.+|..+    ..+++|+.|++++|. +..+|. .   ++.  ++.|++.+++
T Consensus       124 i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcceEEecCCC
Confidence            9984 668889999999999999999888754    568999999999985 556652 1   122  3667777543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.59  E-value=2.7e-14  Score=104.36  Aligned_cols=136  Identities=27%  Similarity=0.355  Sum_probs=82.3

Q ss_pred             cCCCCC-hhccCcccccccccccccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851            3 HLQRLP-DELGNLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI   80 (151)
Q Consensus         3 ~l~~lp-~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l   80 (151)
                      ++..++ ..+..+++|++|++++|.++.++ ..+..+++|+.|++++|.    +....+  ..+..+++|+.|++++|.+
T Consensus        75 ~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~----l~~~~~--~~~~~l~~L~~L~L~~N~i  148 (440)
T 3zyj_A           75 QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR----LTTIPN--GAFVYLSKLKELWLRNNPI  148 (440)
T ss_dssp             CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC----CSSCCT--TTSCSCSSCCEEECCSCCC
T ss_pred             cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc----CCeeCH--hHhhccccCceeeCCCCcc
Confidence            344454 66788888899999988888665 467788888888888776    332223  4566777777777777777


Q ss_pred             CccCc-ccCCCCCCCEEeCCCC-CCccCCc-chhccCccCEEeccCCcccccCCCC--CCCcceEcccCC
Q 041851           81 TRLPE-NIGQLSSLEELDLQEN-NFERIPE-SITQRSKLGRLSLRYCERLQSLSKL--PCKLHELDAHHC  145 (151)
Q Consensus        81 ~~~~~-~~~~l~~L~~L~l~~n-~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~--~~~l~~l~l~~~  145 (151)
                      ++++. .+..+++|+.|++++| .+..++. .+..+++|+.|++++|. +..+|..  +++|+.|++++|
T Consensus       149 ~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N  217 (440)
T 3zyj_A          149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGN  217 (440)
T ss_dssp             CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEECTTS
T ss_pred             cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCcccCEEECCCC
Confidence            76433 4555666666666553 3333333 34455555555555552 3344432  244444444433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.59  E-value=1.7e-14  Score=108.03  Aligned_cols=135  Identities=23%  Similarity=0.269  Sum_probs=86.7

Q ss_pred             cCCCCChhccCcccccccccccccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      ++..+|..+  .+.+++|++++|.++.++ ..+..+++|+.+++++|.    +.+..+  ..|..+++|++|++++|.++
T Consensus        18 ~l~~ip~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~----i~~i~~--~~~~~l~~L~~L~L~~n~l~   89 (570)
T 2z63_A           18 NFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE----IQTIED--GAYQSLSHLSTLILTGNPIQ   89 (570)
T ss_dssp             CCSSCCSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC----CCEECT--TTTTTCTTCCEEECTTCCCC
T ss_pred             CccccCCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCc----CCccCc--ccccCchhCCEEeCcCCcCC
Confidence            455666543  246777777777777553 367777777777777665    333334  55667777777777777777


Q ss_pred             ccC-cccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccc-cCCCC---CCCcceEcccCC
Q 041851           82 RLP-ENIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQ-SLSKL---PCKLHELDAHHC  145 (151)
Q Consensus        82 ~~~-~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~-~~~~~---~~~l~~l~l~~~  145 (151)
                      +++ ..+..+++|++|++++|.++.++. .++.+++|++|++++|.... .+|..   +++|++|+++++
T Consensus        90 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n  159 (570)
T 2z63_A           90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  159 (570)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred             ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC
Confidence            643 466677777777777777765554 46667777777777764322 24432   356677776655

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.59  E-value=1.1e-14  Score=99.92  Aligned_cols=130  Identities=22%  Similarity=0.263  Sum_probs=106.0

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      ++.+++ .+..+++|++|++++|.++.++ .+..+++|+.+++++|.    +.+ .+  . +..+++|+.|++++|.+++
T Consensus        30 ~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~----i~~-~~--~-l~~l~~L~~L~L~~N~l~~   99 (263)
T 1xeu_A           30 SVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ----ISD-LS--P-LKDLTKLEELSVNRNRLKN   99 (263)
T ss_dssp             CTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC----CCC-CG--G-GTTCSSCCEEECCSSCCSC
T ss_pred             Cccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc----cCC-Ch--h-hccCCCCCEEECCCCccCC
Confidence            455566 5678899999999999999887 68889999999999886    332 23  3 7789999999999999998


Q ss_pred             cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC--CCCCcceEcccCCc
Q 041851           83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK--LPCKLHELDAHHCT  146 (151)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~--~~~~l~~l~l~~~~  146 (151)
                      ++....  ++|+.|++++|.++.++ .+..+++|+.|++++|. +..++.  .+++|+.|++++|.
T Consensus       100 l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A          100 LNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVMLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             CTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGGGGGCTTCCEEECTTSC
T ss_pred             cCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChHHccCCCCCEEECCCCc
Confidence            765333  99999999999999775 58889999999999985 566664  34889999998764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=1.8e-14  Score=93.09  Aligned_cols=117  Identities=21%  Similarity=0.338  Sum_probs=90.0

Q ss_pred             cCCCCChhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      ++..+|..+  .+++++|++++|.++.++. .+..+++|+.+++++|.    +....+  ..+..+++|+.+++++|.++
T Consensus        18 ~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~--~~~~~l~~L~~L~l~~N~l~   89 (177)
T 2o6r_A           18 GLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ----IQSLPD--GVFDKLTKLTILYLHENKLQ   89 (177)
T ss_dssp             CCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCCC
T ss_pred             CCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc----ceEeCh--hHccCCCccCEEECCCCCcc
Confidence            466777554  3688999999998887665 46778889999998776    333333  45678889999999999988


Q ss_pred             ccCc-ccCCCCCCCEEeCCCCCCccCCcc-hhccCccCEEeccCCccc
Q 041851           82 RLPE-NIGQLSSLEELDLQENNFERIPES-ITQRSKLGRLSLRYCERL  127 (151)
Q Consensus        82 ~~~~-~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~~~  127 (151)
                      +++. .+..+++|++|++++|.++.+|.. +..+++|+.+++++|+..
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            8654 467888999999999988877764 467888999999988643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.59  E-value=2.5e-15  Score=106.90  Aligned_cols=137  Identities=20%  Similarity=0.217  Sum_probs=91.7

Q ss_pred             cCCCCCh-hccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851            3 HLQRLPD-ELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI   80 (151)
Q Consensus         3 ~l~~lp~-~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l   80 (151)
                      ++..+|. .+..+++|++|++++|.++.+ +..+..+++|+++++++|.    +....+  ..++.+++|+.+++++|.+
T Consensus        63 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~--~~~~~l~~L~~L~L~~n~l  136 (353)
T 2z80_A           63 RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY----LSNLSS--SWFKPLSSLTFLNLLGNPY  136 (353)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC----CSSCCH--HHHTTCTTCSEEECTTCCC
T ss_pred             cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc----CCcCCH--hHhCCCccCCEEECCCCCC
Confidence            4556664 677888888888888888865 4467788888888888775    332222  3366777788888888877


Q ss_pred             CccCc--ccCCCCCCCEEeCCCC-CCccC-CcchhccCccCEEeccCCcccccCCCC---CCCcceEcccCC
Q 041851           81 TRLPE--NIGQLSSLEELDLQEN-NFERI-PESITQRSKLGRLSLRYCERLQSLSKL---PCKLHELDAHHC  145 (151)
Q Consensus        81 ~~~~~--~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l~~l~l~~~  145 (151)
                      ++++.  .+..+++|++|++++| .++.+ +..+..+++|+.+++++|......|..   +++|++|+++++
T Consensus       137 ~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  208 (353)
T 2z80_A          137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK  208 (353)
T ss_dssp             SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             cccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence            77654  5667788888888777 35544 345667777777877777543333332   245566666544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.59  E-value=3e-14  Score=104.41  Aligned_cols=61  Identities=39%  Similarity=0.662  Sum_probs=31.2

Q ss_pred             CCCCCCcccEEEcccCCCCccCcccCCCCCCCEEeCCCCCCccC-CcchhccCccCEEeccCC
Q 041851           63 SLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERI-PESITQRSKLGRLSLRYC  124 (151)
Q Consensus        63 ~~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n  124 (151)
                      .+..+++|+.|++++|.+++++ .+..+++|+.|++++|.++.+ |..+..+++|+.|++++|
T Consensus       191 ~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  252 (452)
T 3zyi_A          191 AFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS  252 (452)
T ss_dssp             TTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred             hccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence            3445555666666655555543 344455555555555555522 334444445555555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.59  E-value=7.6e-15  Score=102.86  Aligned_cols=135  Identities=17%  Similarity=0.140  Sum_probs=78.2

Q ss_pred             CCChhc--cCcccccccccccccceecChhhhcC-----CCCCeeeccccccCCccccccccccCCCCCCcccEEEcccC
Q 041851            6 RLPDEL--GNLEALWSLHAIGTAIREVPSSFFRL-----NNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDC   78 (151)
Q Consensus         6 ~lp~~~--~~l~~L~~L~l~~~~i~~~~~~~~~l-----~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~   78 (151)
                      .+|..+  ..+++|++|++++|.++..|..+..+     ++|+++++++|.    +.+..+  ..++.+++|+.+++++|
T Consensus       110 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~----l~~~~~--~~~~~l~~L~~L~Ls~N  183 (312)
T 1wwl_A          110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH----SLNFSC--EQVRVFPALSTLDLSDN  183 (312)
T ss_dssp             CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS----CCCCCT--TTCCCCSSCCEEECCSC
T ss_pred             hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC----CccchH--HHhccCCCCCEEECCCC
Confidence            355554  66777777777777777556555555     677777777665    333344  45666677777777777


Q ss_pred             CCCc---cCccc--CCCCCCCEEeCCCCCCccCCc----chhccCccCEEeccCCcccccCC-C---CCCCcceEcccCC
Q 041851           79 GITR---LPENI--GQLSSLEELDLQENNFERIPE----SITQRSKLGRLSLRYCERLQSLS-K---LPCKLHELDAHHC  145 (151)
Q Consensus        79 ~l~~---~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~~~~L~~l~l~~n~~~~~~~-~---~~~~l~~l~l~~~  145 (151)
                      .+.+   ++..+  ..+++|++|++++|.++.++.    .+..+++|+.|++++|......| .   .+++|++|++++|
T Consensus       184 ~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N  263 (312)
T 1wwl_A          184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT  263 (312)
T ss_dssp             TTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS
T ss_pred             CcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC
Confidence            6543   23333  566666666666666663322    12344666666666664333221 1   1255666666655


Q ss_pred             c
Q 041851          146 T  146 (151)
Q Consensus       146 ~  146 (151)
                      .
T Consensus       264 ~  264 (312)
T 1wwl_A          264 G  264 (312)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.58  E-value=2.4e-14  Score=105.46  Aligned_cols=136  Identities=18%  Similarity=0.237  Sum_probs=110.7

Q ss_pred             cCCCCChhccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      ++..+|..+.  ++++.|++++|.++.+ +..+..+++|+.|++.+|.    +....|  ..+..+++|+.|++++|.++
T Consensus        22 ~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----i~~~~~--~~~~~l~~L~~L~L~~n~l~   93 (477)
T 2id5_A           22 RFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI----VSAVEP--GAFNNLFNLRTLGLRSNRLK   93 (477)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC----CCEECT--TTTTTCTTCCEEECCSSCCC
T ss_pred             CcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCc----cCEeCh--hhhhCCccCCEEECCCCcCC
Confidence            5778887653  6899999999999976 4588999999999999886    555556  78899999999999999999


Q ss_pred             ccCc-ccCCCCCCCEEeCCCCCCc-cCCcchhccCccCEEeccCCcccccCCC---CCCCcceEcccCCc
Q 041851           82 RLPE-NIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSLRYCERLQSLSK---LPCKLHELDAHHCT  146 (151)
Q Consensus        82 ~~~~-~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~---~~~~l~~l~l~~~~  146 (151)
                      +++. .+..+++|++|++++|.++ ..+..+..+++|+.|++++|......+.   .+++|+.|++++|.
T Consensus        94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  163 (477)
T 2id5_A           94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN  163 (477)
T ss_dssp             SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC
T ss_pred             ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc
Confidence            9765 5788999999999999999 4466788999999999999864333232   23678888887653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.58  E-value=1.9e-14  Score=101.37  Aligned_cols=120  Identities=14%  Similarity=0.254  Sum_probs=72.3

Q ss_pred             CCCCCh-hccCcccccccccccccce---ecChhhhcCCCCCeeeccccccCCc-----------------ccccccccc
Q 041851            4 LQRLPD-ELGNLEALWSLHAIGTAIR---EVPSSFFRLNNIDLLSFQRSRGHKQ-----------------MSLSLPITL   62 (151)
Q Consensus         4 l~~lp~-~~~~l~~L~~L~l~~~~i~---~~~~~~~~l~~L~~l~l~~n~~~~~-----------------~~~~~~~~~   62 (151)
                      +..++. .+..+++|++|++++|.++   ..+..+..+++|+.+++++|.....                 +....+  .
T Consensus       133 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~--~  210 (330)
T 1xku_A          133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA--A  210 (330)
T ss_dssp             CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECT--G
T ss_pred             ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCH--H
Confidence            444442 3566667777777766664   2234556666666666665532110                 122223  4


Q ss_pred             CCCCCCcccEEEcccCCCCccC-cccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCc
Q 041851           63 SLDGLHTLTYLNLTDCGITRLP-ENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCE  125 (151)
Q Consensus        63 ~~~~~~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~  125 (151)
                      .+..+++|+.|++++|.+++++ ..+..+++|+.|++++|.++.+|..+..+++|+.+++++|.
T Consensus       211 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC
T ss_pred             HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc
Confidence            5566667777777777776633 35666777777777777777777666667777777777764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.58  E-value=1.7e-14  Score=110.34  Aligned_cols=113  Identities=24%  Similarity=0.362  Sum_probs=50.5

Q ss_pred             CCCCChhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            4 LQRLPDELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         4 l~~lp~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      +..+|..+.  +++++|++++|.++.+++ .+..+++|+++++++|.    +.+..|  ..++.+++|+.|++++|.+++
T Consensus        16 L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~--~~~~~l~~L~~L~L~~n~l~~   87 (680)
T 1ziw_A           16 LTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT----ISKLEP--ELCQKLPMLKVLNLQHNELSQ   87 (680)
T ss_dssp             CSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC----CCCCCT--THHHHCTTCCEEECCSSCCCC
T ss_pred             ccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc----cCccCH--HHHhcccCcCEEECCCCccCc
Confidence            444554332  455555555555554433 35555555555555443    222222  333344444444444444444


Q ss_pred             cCc-ccCCCCCCCEEeCCCCCCccCC-cchhccCccCEEeccCC
Q 041851           83 LPE-NIGQLSSLEELDLQENNFERIP-ESITQRSKLGRLSLRYC  124 (151)
Q Consensus        83 ~~~-~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n  124 (151)
                      ++. .++.+++|++|++++|.++.++ ..++.+++|++|++++|
T Consensus        88 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  131 (680)
T 1ziw_A           88 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN  131 (680)
T ss_dssp             CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS
T ss_pred             cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC
Confidence            332 2444444444444444444332 23444444444444444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.58  E-value=4.4e-14  Score=103.29  Aligned_cols=125  Identities=20%  Similarity=0.233  Sum_probs=92.3

Q ss_pred             cccccccccccccee-cChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCcc-CcccCCCCC
Q 041851           15 EALWSLHAIGTAIRE-VPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRL-PENIGQLSS   92 (151)
Q Consensus        15 ~~L~~L~l~~~~i~~-~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~l~~   92 (151)
                      ++|++|++++|.++. .|..+..+++|+.+++++|.    +.+..+  ..+..+++|+.|++++|.++++ +..+..+++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  348 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE----INKIDD--NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK  348 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC----CCEECT--TTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCc----ccccCh--hHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence            578888888888874 45567778888888888776    444445  6677788888888888888774 556778888


Q ss_pred             CCEEeCCCCCCccC-CcchhccCccCEEeccCCcccccCCC----CCCCcceEcccCCc
Q 041851           93 LEELDLQENNFERI-PESITQRSKLGRLSLRYCERLQSLSK----LPCKLHELDAHHCT  146 (151)
Q Consensus        93 L~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~----~~~~l~~l~l~~~~  146 (151)
                      |+.|++++|.++.+ |..+..+++|+.|++++|. +..+|.    .+++|+.|++++++
T Consensus       349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEECCCCcccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCC
Confidence            88888888888844 6677788888888888875 445553    23678888887654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.58  E-value=1.7e-14  Score=109.07  Aligned_cols=124  Identities=15%  Similarity=0.150  Sum_probs=102.7

Q ss_pred             ccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCCCCCC
Q 041851           15 EALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLE   94 (151)
Q Consensus        15 ~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L~   94 (151)
                      ++|+.|++++|.++.. ..+..+++|+.|++++|.    +.+..|  ..++.+++|+.|++++|.+++++..+..+++|+
T Consensus       232 ~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~----l~~~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~  304 (597)
T 3oja_B          232 VELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNE----LEKIMY--HPFVKMQRLERLYISNNRLVALNLYGQPIPTLK  304 (597)
T ss_dssp             SCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC----CCEEES--GGGTTCSSCCEEECTTSCCCEEECSSSCCTTCC
T ss_pred             CCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCc----cCCCCH--HHhcCccCCCEEECCCCCCCCCCcccccCCCCc
Confidence            4677777888777754 567888999999999876    555566  778899999999999999999887788899999


Q ss_pred             EEeCCCCCCccCCcchhccCccCEEeccCCcccccCC-CCCCCcceEcccCCc
Q 041851           95 ELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLS-KLPCKLHELDAHHCT  146 (151)
Q Consensus        95 ~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~l~~l~l~~~~  146 (151)
                      .|++++|.++.+|..+..+++|+.|++++|.. ..++ ..+++|+.|++++++
T Consensus       305 ~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          305 VLDLSHNHLLHVERNQPQFDRLENLYLDHNSI-VTLKLSTHHTLKNLTLSHND  356 (597)
T ss_dssp             EEECCSSCCCCCGGGHHHHTTCSEEECCSSCC-CCCCCCTTCCCSEEECCSSC
T ss_pred             EEECCCCCCCccCcccccCCCCCEEECCCCCC-CCcChhhcCCCCEEEeeCCC
Confidence            99999999999998888999999999999864 4444 456889999998765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.57  E-value=1.8e-14  Score=108.43  Aligned_cols=116  Identities=19%  Similarity=0.246  Sum_probs=92.1

Q ss_pred             cccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCCCCCCE
Q 041851           16 ALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEE   95 (151)
Q Consensus        16 ~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L~~   95 (151)
                      .|+.|++++|.++.+|. +..+++|+.|+++.|.    +. .+|  ..++.+++|+.|++++|.++++| .++.+++|+.
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~----l~-~lp--~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~  512 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR----LR-ALP--PALAALRCLEVLQASDNALENVD-GVANLPRLQE  512 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC----CC-CCC--GGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCE
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCccc----cc-ccc--hhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcE
Confidence            46778888888888876 8888999999999876    33 456  67888889999999999998887 7888999999


Q ss_pred             EeCCCCCCccC--CcchhccCccCEEeccCCcccccCCCC-------CCCcceEc
Q 041851           96 LDLQENNFERI--PESITQRSKLGRLSLRYCERLQSLSKL-------PCKLHELD  141 (151)
Q Consensus        96 L~l~~n~~~~~--~~~~~~~~~L~~l~l~~n~~~~~~~~~-------~~~l~~l~  141 (151)
                      |++++|.++.+  |..++.+++|+.|++++|+ +..+|..       +++|+.|+
T Consensus       513 L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             EECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred             EECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence            99999998866  7888889999999999986 4444432       35666654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.57  E-value=1e-14  Score=109.28  Aligned_cols=133  Identities=22%  Similarity=0.361  Sum_probs=88.4

Q ss_pred             CChhccCcccccccccccccceecC--hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc--
Q 041851            7 LPDELGNLEALWSLHAIGTAIREVP--SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR--   82 (151)
Q Consensus         7 lp~~~~~l~~L~~L~l~~~~i~~~~--~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~--   82 (151)
                      +|..+..+++|++|++++|.+...+  ..+..+++|+.+++++|.    +....+  ..+..+++|+.+++++|.+.+  
T Consensus       388 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~  461 (570)
T 2z63_A          388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH----TRVAFN--GIFNGLSSLEVLKMAGNSFQENF  461 (570)
T ss_dssp             EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC----CEECCT--TTTTTCTTCCEEECTTCEEGGGE
T ss_pred             ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc----ccccch--hhhhcCCcCcEEECcCCcCcccc
Confidence            3433555566666666666555332  245556666666666554    333444  567778888888888888762  


Q ss_pred             cCcccCCCCCCCEEeCCCCCCccC-CcchhccCccCEEeccCCcccccCCC-C---CCCcceEcccCCc
Q 041851           83 LPENIGQLSSLEELDLQENNFERI-PESITQRSKLGRLSLRYCERLQSLSK-L---PCKLHELDAHHCT  146 (151)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~-~---~~~l~~l~l~~~~  146 (151)
                      +|..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|. +..++. .   +++|+.|++++++
T Consensus       462 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             chhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCc
Confidence            777788888888888888888844 6677788888888888875 344442 2   3677888887654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.57  E-value=2e-14  Score=108.90  Aligned_cols=110  Identities=24%  Similarity=0.344  Sum_probs=62.7

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      .+..+| .+..+++|+.|++++|.++.+++ +..+++|+.|+++.|....      +  +.+..+++|+.|++++|.+.+
T Consensus        54 ~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~------l--~~l~~l~~L~~L~Ls~N~l~~  123 (605)
T 1m9s_A           54 DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD------L--SSLKDLKKLKSLSLEHNGISD  123 (605)
T ss_dssp             CCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC------C--TTSTTCTTCCEEECTTSCCCC
T ss_pred             CCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC------C--hhhccCCCCCEEEecCCCCCC
Confidence            345555 46777788888888887776654 6677777777777665211      1  234455555555555555554


Q ss_pred             cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCC
Q 041851           83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYC  124 (151)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n  124 (151)
                      ++ .+..+++|+.|+|++|.++.+ ..+..+++|+.|++++|
T Consensus       124 l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N  163 (605)
T 1m9s_A          124 IN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN  163 (605)
T ss_dssp             CG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS
T ss_pred             Cc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC
Confidence            32 344455555555555555443 33444445555555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.56  E-value=2.7e-14  Score=101.14  Aligned_cols=125  Identities=21%  Similarity=0.239  Sum_probs=83.3

Q ss_pred             ccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCC
Q 041851           11 LGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQL   90 (151)
Q Consensus        11 ~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l   90 (151)
                      +..+++|++|++++|.++.++. +..+++|+.+++++|.    +.. .   +.+..+++|+.+++++|.+++++ .+..+
T Consensus       217 ~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~----l~~-~---~~~~~l~~L~~L~l~~n~l~~~~-~~~~l  286 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQ----ISD-I---NAVKDLTKLKMLNVGSNQISDIS-VLNNL  286 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC----CCC-C---GGGTTCTTCCEEECCSSCCCCCG-GGGGC
T ss_pred             hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCc----cCC-C---hhHhcCCCcCEEEccCCccCCCh-hhcCC
Confidence            4556666666666666665544 5666667777776554    221 1   24566777888888888777763 46777


Q ss_pred             CCCCEEeCCCCCCc-cCCcchhccCccCEEeccCCcccccCCC--CCCCcceEcccCCc
Q 041851           91 SSLEELDLQENNFE-RIPESITQRSKLGRLSLRYCERLQSLSK--LPCKLHELDAHHCT  146 (151)
Q Consensus        91 ~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~--~~~~l~~l~l~~~~  146 (151)
                      ++|+.|++++|.++ ..+..+..+++|+.+++++|+. ..++.  .+++|+.|++++|.
T Consensus       287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI-TDIRPLASLSKMDSADFANQV  344 (347)
T ss_dssp             TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC-CCCGGGGGCTTCSEESSSCC-
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc-ccccChhhhhccceeehhhhc
Confidence            88888888888777 4445677778888888888763 33332  34778888888775

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.56  E-value=2.7e-14  Score=93.57  Aligned_cols=123  Identities=18%  Similarity=0.186  Sum_probs=98.1

Q ss_pred             ccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCcc-CcccCCCCCCCE
Q 041851           17 LWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRL-PENIGQLSSLEE   95 (151)
Q Consensus        17 L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~l~~L~~   95 (151)
                      -+.++++++.++.+|..+.  .+++.+++++|.    +....+ ...+..+++|+.|++++|.++++ +..+..+++|+.
T Consensus        10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~----i~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   82 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNE----LGRISS-DGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE   82 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCC----CCSBCC-SCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             CCEEEcCCCCcCcCccCCC--CCCCEEECCCCc----CCccCC-ccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCE
Confidence            3689999999998887543  389999999886    333333 02477899999999999999994 678999999999


Q ss_pred             EeCCCCCCccCCc-chhccCccCEEeccCCcccccCCCC---CCCcceEcccCCc
Q 041851           96 LDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLSKL---PCKLHELDAHHCT  146 (151)
Q Consensus        96 L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l~~l~l~~~~  146 (151)
                      |++++|.++.++. .+..+++|+.|++++|......|..   +++|++|++++++
T Consensus        83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            9999999995544 5888999999999999754444543   4789999998764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.56  E-value=4.1e-14  Score=106.82  Aligned_cols=118  Identities=25%  Similarity=0.275  Sum_probs=63.9

Q ss_pred             cCCCCChhccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      ++..+|..+..+++|++|++++|.++.+ |..+..+++|+.+++.+|.    +....+. ..+..+++|+.+++++|.+.
T Consensus       289 ~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----~~~~~~~-~~~~~l~~L~~L~l~~n~l~  363 (606)
T 3t6q_A          289 HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT----KRLELGT-GCLENLENLRELDLSHDDIE  363 (606)
T ss_dssp             CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCS----SCCBCCS-STTTTCTTCCEEECCSSCCC
T ss_pred             ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCC----cccccch-hhhhccCcCCEEECCCCccc
Confidence            3455666666666666666666666644 3355566666666666553    1212220 23455566666666666655


Q ss_pred             cc---CcccCCCCCCCEEeCCCCCCc-cCCcchhccCccCEEeccCCc
Q 041851           82 RL---PENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSLRYCE  125 (151)
Q Consensus        82 ~~---~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~  125 (151)
                      +.   +..+..+++|++|++++|.++ ..|..+..+++|+.|++++|.
T Consensus       364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  411 (606)
T 3t6q_A          364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR  411 (606)
T ss_dssp             EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred             cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence            42   344555566666666655555 233344455555555555553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.56  E-value=6.4e-14  Score=98.85  Aligned_cols=114  Identities=19%  Similarity=0.301  Sum_probs=80.3

Q ss_pred             cCCCCChhccCcccccccccccccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      ++..+|..+.  ++++.|++++|.++.++ ..+..+++|+.+++++|.    +....|  ..+..+++|+.|++++|.++
T Consensus        44 ~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~--~~~~~l~~L~~L~L~~n~l~  115 (332)
T 2ft3_A           44 GLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK----ISKIHE--KAFSPLRKLQKLYISKNHLV  115 (332)
T ss_dssp             CCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC----CCEECG--GGSTTCTTCCEEECCSSCCC
T ss_pred             CccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc----cCccCH--hHhhCcCCCCEEECCCCcCC
Confidence            4556666543  57788888888887654 467778888888888765    444445  66777788888888888877


Q ss_pred             ccCcccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcc
Q 041851           82 RLPENIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCER  126 (151)
Q Consensus        82 ~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~  126 (151)
                      ++|..+.  ++|++|++++|.++.++. .+..+++|+.|++++|..
T Consensus       116 ~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  159 (332)
T 2ft3_A          116 EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL  159 (332)
T ss_dssp             SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred             ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence            7665554  677778887777775554 466777777777777653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.56  E-value=7.1e-14  Score=105.92  Aligned_cols=131  Identities=24%  Similarity=0.280  Sum_probs=100.9

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      ++..+|. +..+++|+.|++++|.++.++ .+..+++|+.|+++.|.    +.. .   +.+..+++|+.|++++|.+++
T Consensus        76 ~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~----l~~-l---~~l~~l~~L~~L~Ls~N~l~~  145 (605)
T 1m9s_A           76 KLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNG----ISD-I---NGLVHLPQLESLYLGNNKITD  145 (605)
T ss_dssp             CCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSC----CCC-C---GGGGGCTTCSEEECCSSCCCC
T ss_pred             CCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCC----CCC-C---ccccCCCccCEEECCCCccCC
Confidence            4556665 778888999999998888765 57788889999998776    222 1   346678889999999998887


Q ss_pred             cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC--CCCCcceEcccCCc
Q 041851           83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK--LPCKLHELDAHHCT  146 (151)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~--~~~~l~~l~l~~~~  146 (151)
                      + ..+..+++|+.|+|++|.++.++. +..+++|+.|++++|. +..++.  .+++|+.|++++|.
T Consensus       146 l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          146 I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             C-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCSEE
T ss_pred             c-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC-CCCChHHccCCCCCEEEccCCc
Confidence            7 567888899999999998886655 7788889999999884 455553  24788888888764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.55  E-value=9.4e-14  Score=104.28  Aligned_cols=132  Identities=16%  Similarity=0.153  Sum_probs=95.5

Q ss_pred             CChhccCcccccccccccccceecC---hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-
Q 041851            7 LPDELGNLEALWSLHAIGTAIREVP---SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-   82 (151)
Q Consensus         7 lp~~~~~l~~L~~L~l~~~~i~~~~---~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-   82 (151)
                      +|..+..+++|++|++++|.++.++   ..+..+++|+.+++++|.    +.+..|. ..+..+++|+.+++++|.+++ 
T Consensus       369 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~----l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~  443 (562)
T 3a79_B          369 VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS----LNSHAYD-RTCAWAESILVLNLSSNMLTGS  443 (562)
T ss_dssp             TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC----CBSCCSS-CCCCCCTTCCEEECCSSCCCGG
T ss_pred             hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc----CCCccCh-hhhcCcccCCEEECCCCCCCcc
Confidence            5666777777888888887777544   346677778888887765    3333331 346667788888888888765 


Q ss_pred             cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCC----CCCcceEcccCCc
Q 041851           83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKL----PCKLHELDAHHCT  146 (151)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~----~~~l~~l~l~~~~  146 (151)
                      .+..+.  ++|+.|++++|.++.+|..+..+++|+.|++++|. +..+|..    +++|+.|++++++
T Consensus       444 ~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          444 VFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             GGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCC
T ss_pred             hhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCC
Confidence            444333  68899999999888888877788899999999885 5577753    3678888888764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.55  E-value=1.1e-13  Score=97.53  Aligned_cols=124  Identities=22%  Similarity=0.338  Sum_probs=52.3

Q ss_pred             ccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccC-cccC
Q 041851           11 LGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLP-ENIG   88 (151)
Q Consensus        11 ~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~-~~~~   88 (151)
                      +..+++|++|++++|.++.+ |..+..+++|+++++++|...     ..|  ..+  .++|+.+++++|.+++++ ..+.
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~l~--~~~--~~~L~~L~l~~n~l~~~~~~~~~  142 (330)
T 1xku_A           72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-----ELP--EKM--PKTLQELRVHENEITKVRKSVFN  142 (330)
T ss_dssp             TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-----BCC--SSC--CTTCCEEECCSSCCCBBCHHHHT
T ss_pred             hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-----ccC--hhh--cccccEEECCCCcccccCHhHhc
Confidence            44445555555555554433 334444555555555544311     111  111  123333344333333322 1244


Q ss_pred             CCCCCCEEeCCCCCCc---cCCcchhccCccCEEeccCCcccccCCC-CCCCcceEcccC
Q 041851           89 QLSSLEELDLQENNFE---RIPESITQRSKLGRLSLRYCERLQSLSK-LPCKLHELDAHH  144 (151)
Q Consensus        89 ~l~~L~~L~l~~n~~~---~~~~~~~~~~~L~~l~l~~n~~~~~~~~-~~~~l~~l~l~~  144 (151)
                      .+++|+.|++++|.++   ..+..+..+++|+.+++++|. +..+|. ..++|++|++++
T Consensus       143 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~  201 (330)
T 1xku_A          143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDG  201 (330)
T ss_dssp             TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTT
T ss_pred             CCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEECCC
Confidence            4555555555555443   223344445555555555543 333332 124444444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.55  E-value=4.2e-14  Score=103.38  Aligned_cols=119  Identities=18%  Similarity=0.241  Sum_probs=102.5

Q ss_pred             CChhccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-cC
Q 041851            7 LPDELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-LP   84 (151)
Q Consensus         7 lp~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~   84 (151)
                      .|..+..+++|++|++++|.++.+ +..+..+++|+.+++++|.    +....+  ..+..+++|+.|++++|.+++ .+
T Consensus       291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~  364 (455)
T 3v47_A          291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF----LGSIDS--RMFENLDKLEVLDLSYNHIRALGD  364 (455)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC----CCEECG--GGGTTCTTCCEEECCSSCCCEECT
T ss_pred             chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc----cCCcCh--hHhcCcccCCEEECCCCcccccCh
Confidence            467788999999999999999966 5588899999999999886    444555  678899999999999999998 47


Q ss_pred             cccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccccCC
Q 041851           85 ENIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLS  131 (151)
Q Consensus        85 ~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~  131 (151)
                      ..+..+++|++|++++|.++.+|. .+..+++|+.+++++|+.....|
T Consensus       365 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          365 QSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             hhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            789999999999999999997776 45789999999999998665555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.55  E-value=5.2e-14  Score=107.59  Aligned_cols=136  Identities=23%  Similarity=0.250  Sum_probs=104.9

Q ss_pred             cCCCCCh-hccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851            3 HLQRLPD-ELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI   80 (151)
Q Consensus         3 ~l~~lp~-~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l   80 (151)
                      ++..+|. .+..+++|++|++++|.++.+ |..+..+++|+.+++++|.    +....+  ..++.+++|+++++++|.+
T Consensus        36 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~l~~--~~~~~l~~L~~L~L~~n~l  109 (680)
T 1ziw_A           36 QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE----LSQLSD--KTFAFCTNLTELHLMSNSI  109 (680)
T ss_dssp             CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC----CCCCCT--TTTTTCTTCSEEECCSSCC
T ss_pred             CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc----cCccCh--hhhccCCCCCEEECCCCcc
Confidence            4666774 588899999999999999855 5678899999999999776    332223  4688889999999999998


Q ss_pred             CccC-cccCCCCCCCEEeCCCCCCc-cCCcchhccCccCEEeccCCcccccCCC------CCCCcceEcccCC
Q 041851           81 TRLP-ENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSLRYCERLQSLSK------LPCKLHELDAHHC  145 (151)
Q Consensus        81 ~~~~-~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~------~~~~l~~l~l~~~  145 (151)
                      ++++ ..++.+++|++|++++|.++ ..+..+..+++|+.|++++|.. ..++.      ...+|+.|++++|
T Consensus       110 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~L~~n  181 (680)
T 1ziw_A          110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI-QALKSEELDIFANSSLKKLELSSN  181 (680)
T ss_dssp             CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC-CCBCHHHHGGGTTCEESEEECTTC
T ss_pred             CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc-cccCHHHhhccccccccEEECCCC
Confidence            8855 57888999999999999888 4455677888999999998853 33332      1267888888766

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.55  E-value=5.4e-15  Score=95.62  Aligned_cols=115  Identities=19%  Similarity=0.196  Sum_probs=95.3

Q ss_pred             cCCCCChhccCcc-cccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            3 HLQRLPDELGNLE-ALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         3 ~l~~lp~~~~~l~-~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      ++..+|. +..+. +|++|++++|.++.+ ..+..+++|+.+++++|.    +....+  ..+..+++|+.+++++|.++
T Consensus        30 ~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~----l~~~~~--~~~~~l~~L~~L~L~~N~i~  101 (176)
T 1a9n_A           30 KIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR----ICRIGE--GLDQALPDLTELILTNNSLV  101 (176)
T ss_dssp             CCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC----CCEECS--CHHHHCTTCCEEECCSCCCC
T ss_pred             CCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc----ccccCc--chhhcCCCCCEEECCCCcCC
Confidence            4666664 44444 999999999999977 568889999999999887    433222  33478899999999999998


Q ss_pred             ccCc--ccCCCCCCCEEeCCCCCCccCCcc----hhccCccCEEeccCCc
Q 041851           82 RLPE--NIGQLSSLEELDLQENNFERIPES----ITQRSKLGRLSLRYCE  125 (151)
Q Consensus        82 ~~~~--~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~~L~~l~l~~n~  125 (151)
                      +++.  .+..+++|+.|++++|.++.+|..    +..+++|+.++++.|.
T Consensus       102 ~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          102 ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            8776  788999999999999999988874    8899999999999885

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.54  E-value=7.6e-15  Score=102.86  Aligned_cols=106  Identities=17%  Similarity=0.240  Sum_probs=50.4

Q ss_pred             Ccccccccccccccce-ecChhh--hcCCCCCeeeccccccCCccccccccccCCCCC-----CcccEEEcccCCCCccC
Q 041851           13 NLEALWSLHAIGTAIR-EVPSSF--FRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGL-----HTLTYLNLTDCGITRLP   84 (151)
Q Consensus        13 ~l~~L~~L~l~~~~i~-~~~~~~--~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~-----~~L~~l~l~~~~l~~~~   84 (151)
                      .+++|++|++++|.++ .+|..+  ..+++|+++++++|.    +.+. |  ..++.+     ++|+.|++++|.+++++
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~----l~~~-~--~~~~~l~~~~~~~L~~L~L~~N~l~~~~  165 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS----WATR-D--AWLAELQQWLKPGLKVLSIAQAHSLNFS  165 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB----CSSS-S--SHHHHHHTTCCTTCCEEEEESCSCCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC----Ccch-h--HHHHHHHHhhcCCCcEEEeeCCCCccch
Confidence            3445555555555554 334333  445555555555443    2211 2  222222     45555555555555532


Q ss_pred             -cccCCCCCCCEEeCCCCCCc-c--CCcch--hccCccCEEeccCCc
Q 041851           85 -ENIGQLSSLEELDLQENNFE-R--IPESI--TQRSKLGRLSLRYCE  125 (151)
Q Consensus        85 -~~~~~l~~L~~L~l~~n~~~-~--~~~~~--~~~~~L~~l~l~~n~  125 (151)
                       ..++.+++|++|++++|.+. .  ++..+  ..+++|+.|++++|.
T Consensus       166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~  212 (312)
T 1wwl_A          166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG  212 (312)
T ss_dssp             TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred             HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc
Confidence             45555555555555555543 1  22222  445555566665553

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.54  E-value=1.9e-14  Score=101.05  Aligned_cols=126  Identities=17%  Similarity=0.107  Sum_probs=87.2

Q ss_pred             CcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCC-CCCCcccEEEcccCCCCccCcccCCC
Q 041851           13 NLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSL-DGLHTLTYLNLTDCGITRLPENIGQL   90 (151)
Q Consensus        13 ~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~-~~~~~L~~l~l~~~~l~~~~~~~~~l   90 (151)
                      .+++|++|++++|.++.+++ .+..+++|+.+++++|.    +....+  ..+ ..+++|+.+++++|.+++++. ...+
T Consensus       118 ~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l  190 (317)
T 3o53_A          118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE----IDTVNF--AELAASSDTLEHLNLQYNFIYDVKG-QVVF  190 (317)
T ss_dssp             CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC----CCEEEG--GGGGGGTTTCCEEECTTSCCCEEEC-CCCC
T ss_pred             ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC----CCcccH--HHHhhccCcCCEEECCCCcCccccc-cccc
Confidence            35667777777777775533 56667778888888765    333333  333 356778888888888877643 3347


Q ss_pred             CCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCC---CCCcceEcccCCc
Q 041851           91 SSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKL---PCKLHELDAHHCT  146 (151)
Q Consensus        91 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l~~l~l~~~~  146 (151)
                      ++|+.|++++|.++.+|..+..+++|+.|++++|. +..+|..   +++|+.|+++++.
T Consensus       191 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          191 AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             TTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred             ccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCC
Confidence            88888888888888777777778888888888874 4556643   3677888887665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.54  E-value=4.3e-14  Score=110.66  Aligned_cols=134  Identities=23%  Similarity=0.210  Sum_probs=91.9

Q ss_pred             cCCCCChhccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCcccccc-ccccCCCCCCcccEEEcccCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSL-PITLSLDGLHTLTYLNLTDCGI   80 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~-~~~~~~~~~~~L~~l~l~~~~l   80 (151)
                      ++..+|.   -.+++++|++++|.++.+ +..+..+++|+.|++++|.    ..... |  +.+..+++|++|++++|.+
T Consensus        15 ~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~----~~~~i~~--~~f~~L~~L~~L~Ls~N~l   85 (844)
T 3j0a_A           15 NLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY----TPLTIDK--EAFRNLPNLRILDLGSSKI   85 (844)
T ss_dssp             CSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTC----CCCEECT--TTTSSCTTCCEEECTTCCC
T ss_pred             CCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCC----CccccCH--HHhcCCCCCCEEECCCCcC
Confidence            5677776   356788888888888754 5577788888888888663    12222 4  5677778888888888887


Q ss_pred             Cc-cCcccCCCCCCCEEeCCCCCCc-cCCcc--hhccCccCEEeccCCcccccCC-C---CCCCcceEcccCC
Q 041851           81 TR-LPENIGQLSSLEELDLQENNFE-RIPES--ITQRSKLGRLSLRYCERLQSLS-K---LPCKLHELDAHHC  145 (151)
Q Consensus        81 ~~-~~~~~~~l~~L~~L~l~~n~~~-~~~~~--~~~~~~L~~l~l~~n~~~~~~~-~---~~~~l~~l~l~~~  145 (151)
                      ++ .|..+..+++|++|++++|.++ ..+..  +..+++|+.|++++|......+ .   .+++|++|+++++
T Consensus        86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A           86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence            77 4667777888888888888776 34443  6677788888888775433222 1   2366777777665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.54  E-value=1.4e-13  Score=101.18  Aligned_cols=119  Identities=22%  Similarity=0.341  Sum_probs=56.3

Q ss_pred             ccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCC
Q 041851           11 LGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQL   90 (151)
Q Consensus        11 ~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l   90 (151)
                      +..+++|++|++++|.++.++  +..+++|+++++++|.    +.+     ..++.+++|+.+++++|.+++++  ++.+
T Consensus        60 l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~----l~~-----~~~~~l~~L~~L~L~~N~l~~l~--~~~l  126 (457)
T 3bz5_A           60 IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK----LTN-----LDVTPLTKLTYLNCDTNKLTKLD--VSQN  126 (457)
T ss_dssp             GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC----CSC-----CCCTTCTTCCEEECCSSCCSCCC--CTTC
T ss_pred             hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC----Cce-----eecCCCCcCCEEECCCCcCCeec--CCCC
Confidence            444555555555555544443  3444555555555443    111     01444555555555555555543  4555


Q ss_pred             CCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCC-CCCCCcceEcccC
Q 041851           91 SSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLS-KLPCKLHELDAHH  144 (151)
Q Consensus        91 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~l~~l~l~~  144 (151)
                      ++|++|++++|.++.++  ++.+++|+.+++++|..++.++ ..+++|+.|++++
T Consensus       127 ~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~  179 (457)
T 3bz5_A          127 PLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSF  179 (457)
T ss_dssp             TTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCS
T ss_pred             CcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCC
Confidence            55555555555555432  3444555555555553333332 1124444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.54  E-value=5.9e-15  Score=103.32  Aligned_cols=37  Identities=8%  Similarity=-0.017  Sum_probs=22.5

Q ss_pred             CcccccccccccccceecC-hhhhcCCCCCeeeccccc
Q 041851           13 NLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSR   49 (151)
Q Consensus        13 ~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~   49 (151)
                      .+++|++|++++|.++.++ ..+..+++|++|++++|+
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  180 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP  180 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC
Confidence            4566666666666666443 355566666666666554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.53  E-value=1.3e-14  Score=108.42  Aligned_cols=124  Identities=18%  Similarity=0.257  Sum_probs=91.2

Q ss_pred             cCCCC-ChhccCcccccccccccccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851            3 HLQRL-PDELGNLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI   80 (151)
Q Consensus         3 ~l~~l-p~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l   80 (151)
                      ++..+ |..+..+++|++|++++|.++.++ ..+..+++|+++++++|.    +.+..+  ..++.+++|+.|++++|.+
T Consensus        37 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~--~~~~~l~~L~~L~Ls~n~l  110 (549)
T 2z81_A           37 KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH----LSSLSS--SWFGPLSSLKYLNLMGNPY  110 (549)
T ss_dssp             CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC----CCSCCH--HHHTTCTTCCEEECTTCCC
T ss_pred             ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc----cCccCH--HHhccCCCCcEEECCCCcc
Confidence            34444 466788889999999999888654 578888889999998776    443444  4577888888888888888


Q ss_pred             Cc--cCcccCCCCCCCEEeCCCCC-CccCC-cchhccCccCEEeccCCcccccCCC
Q 041851           81 TR--LPENIGQLSSLEELDLQENN-FERIP-ESITQRSKLGRLSLRYCERLQSLSK  132 (151)
Q Consensus        81 ~~--~~~~~~~l~~L~~L~l~~n~-~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~  132 (151)
                      ++  .+..++.+++|++|++++|. +..+| ..+..+++|+.|++++|......|.
T Consensus       111 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  166 (549)
T 2z81_A          111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ  166 (549)
T ss_dssp             SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             cccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence            75  45677888888888888887 45555 3677788888888888765444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.53  E-value=7.4e-14  Score=98.52  Aligned_cols=140  Identities=16%  Similarity=0.241  Sum_probs=90.3

Q ss_pred             cCCCCCh-hccCccccccccccccccee---cChhhhcCCCCCeeeccccccCCc-----------------cccccccc
Q 041851            3 HLQRLPD-ELGNLEALWSLHAIGTAIRE---VPSSFFRLNNIDLLSFQRSRGHKQ-----------------MSLSLPIT   61 (151)
Q Consensus         3 ~l~~lp~-~~~~l~~L~~L~l~~~~i~~---~~~~~~~l~~L~~l~l~~n~~~~~-----------------~~~~~~~~   61 (151)
                      ++..+|. .+..+++|++|++++|.++.   .+..+..+ +|+.+++++|.....                 +....+  
T Consensus       134 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~--  210 (332)
T 2ft3_A          134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIEL--  210 (332)
T ss_dssp             CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCT--
T ss_pred             ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCH--
Confidence            4555654 36677777777777777652   23333333 444444444431110                 222233  


Q ss_pred             cCCCCCCcccEEEcccCCCCccC-cccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC-C------
Q 041851           62 LSLDGLHTLTYLNLTDCGITRLP-ENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK-L------  133 (151)
Q Consensus        62 ~~~~~~~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~-~------  133 (151)
                      ..+..+++|+.+++++|.+++++ ..+..+++|+.|++++|.++.+|..+..+++|+.+++++|. +..++. .      
T Consensus       211 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~  289 (332)
T 2ft3_A          211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGF  289 (332)
T ss_dssp             TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSC
T ss_pred             HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhHcccccc
Confidence            45777788888888888888744 46778888888888888888888888888888888888875 444432 1      


Q ss_pred             ---CCCcceEcccCCc
Q 041851          134 ---PCKLHELDAHHCT  146 (151)
Q Consensus       134 ---~~~l~~l~l~~~~  146 (151)
                         ...++.+++.+++
T Consensus       290 ~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          290 GVKRAYYNGISLFNNP  305 (332)
T ss_dssp             CSSSCCBSEEECCSSS
T ss_pred             ccccccccceEeecCc
Confidence               2446777777654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.52  E-value=2.3e-13  Score=96.37  Aligned_cols=110  Identities=17%  Similarity=0.252  Sum_probs=58.6

Q ss_pred             CCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCcc
Q 041851            4 LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRL   83 (151)
Q Consensus         4 l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~   83 (151)
                      +..+|. +..+++|++|++++|.++.++. +..+++|+.+++++|.    +.. .   +.+..+++|+.+++++|.++++
T Consensus        56 i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~----i~~-~---~~~~~l~~L~~L~l~~n~i~~~  125 (347)
T 4fmz_A           56 VASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK----ITD-I---SALQNLTNLRELYLNEDNISDI  125 (347)
T ss_dssp             CCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC----CCC-C---GGGTTCTTCSEEECTTSCCCCC
T ss_pred             cccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc----ccC-c---hHHcCCCcCCEEECcCCcccCc
Confidence            334442 5556666666666666665544 5566666666666554    111 1   2345556666666666666554


Q ss_pred             CcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCC
Q 041851           84 PENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYC  124 (151)
Q Consensus        84 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n  124 (151)
                      +. +..+++|+.|++++|.....+..+..+++|+.+++++|
T Consensus       126 ~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~  165 (347)
T 4fmz_A          126 SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES  165 (347)
T ss_dssp             GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS
T ss_pred             hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC
Confidence            43 55555555555555533322223444555555555554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.52  E-value=3.9e-14  Score=104.88  Aligned_cols=127  Identities=17%  Similarity=0.094  Sum_probs=93.0

Q ss_pred             Ccccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCC-CCCcccEEEcccCCCCccCcccCCC
Q 041851           13 NLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLD-GLHTLTYLNLTDCGITRLPENIGQL   90 (151)
Q Consensus        13 ~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~-~~~~L~~l~l~~~~l~~~~~~~~~l   90 (151)
                      .+++|+.|++++|.++.+ |..+..+++|+.|++++|.    +.+..|  ..+. .+++|+.|++++|.+++++. ...+
T Consensus       118 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~--~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l  190 (487)
T 3oja_A          118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE----IDTVNF--AELAASSDTLEHLNLQYNFIYDVKG-QVVF  190 (487)
T ss_dssp             CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC----CCEEEG--GGGGGGTTTCCEEECTTSCCCEEEC-CCCC
T ss_pred             ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC----CCCcCh--HHHhhhCCcccEEecCCCccccccc-cccC
Confidence            456778888888888755 4467778888888888776    444444  4443 57888888888888887643 3458


Q ss_pred             CCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCC---CCCcceEcccCCcc
Q 041851           91 SSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKL---PCKLHELDAHHCTA  147 (151)
Q Consensus        91 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l~~l~l~~~~~  147 (151)
                      ++|+.|++++|.++.+|..+..+++|+.|++++|. +..+|..   +++|+.|+++++..
T Consensus       191 ~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          191 AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             TTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCB
T ss_pred             CCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCC
Confidence            88888888888888777778888888888888875 4456643   36788888887653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.51  E-value=5.8e-14  Score=98.25  Aligned_cols=135  Identities=15%  Similarity=0.087  Sum_probs=88.6

Q ss_pred             CCChhc--cCccccccccccccccee-cC----hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccC
Q 041851            6 RLPDEL--GNLEALWSLHAIGTAIRE-VP----SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDC   78 (151)
Q Consensus         6 ~lp~~~--~~l~~L~~L~l~~~~i~~-~~----~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~   78 (151)
                      ..|..+  ..+++|++|++++|.++. .+    ..+..+++|+.+++++|.    +....+  ..++.+++|+.|++++|
T Consensus       106 ~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~----l~~~~~--~~~~~l~~L~~L~Ls~N  179 (310)
T 4glp_A          106 TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH----SPAFSC--EQVRAFPALTSLDLSDN  179 (310)
T ss_dssp             CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS----SCCCCT--TSCCCCTTCCEEECCSC
T ss_pred             chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC----cchhhH--HHhccCCCCCEEECCCC
Confidence            345555  788999999999999874 23    234468899999999886    444445  66778888888888888


Q ss_pred             CCCc---cC--cccCCCCCCCEEeCCCCCCccCCcc----hhccCccCEEeccCCcccccCCCC------CCCcceEccc
Q 041851           79 GITR---LP--ENIGQLSSLEELDLQENNFERIPES----ITQRSKLGRLSLRYCERLQSLSKL------PCKLHELDAH  143 (151)
Q Consensus        79 ~l~~---~~--~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~~L~~l~l~~n~~~~~~~~~------~~~l~~l~l~  143 (151)
                      .+.+   ++  ..+..+++|++|++++|.++.++..    +..+++|++|++++|......|..      +++|++|+++
T Consensus       180 ~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls  259 (310)
T 4glp_A          180 PGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLS  259 (310)
T ss_dssp             TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECC
T ss_pred             CCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECC
Confidence            8653   22  2235667777777777777644442    345567777777776543332321      1466666666


Q ss_pred             CCc
Q 041851          144 HCT  146 (151)
Q Consensus       144 ~~~  146 (151)
                      +|.
T Consensus       260 ~N~  262 (310)
T 4glp_A          260 FAG  262 (310)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.50  E-value=3.9e-15  Score=104.58  Aligned_cols=117  Identities=14%  Similarity=0.097  Sum_probs=96.6

Q ss_pred             cCCCCC-hhccCcccccccccccccceec-Chhh-hcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCC
Q 041851            3 HLQRLP-DELGNLEALWSLHAIGTAIREV-PSSF-FRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCG   79 (151)
Q Consensus         3 ~l~~lp-~~~~~l~~L~~L~l~~~~i~~~-~~~~-~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~   79 (151)
                      ++..++ ..+..+++|++|++++|.++.+ +..+ ..+++|+.+++++|.    +... +   ....+++|+.+++++|.
T Consensus       131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~----l~~~-~---~~~~l~~L~~L~Ls~N~  202 (317)
T 3o53_A          131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF----IYDV-K---GQVVFAKLKTLDLSSNK  202 (317)
T ss_dssp             CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC----CCEE-E---CCCCCTTCCEEECCSSC
T ss_pred             CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc----Cccc-c---cccccccCCEEECCCCc
Confidence            344554 4677899999999999999865 4444 468999999999886    3322 2   23358899999999999


Q ss_pred             CCccCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCccc
Q 041851           80 ITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERL  127 (151)
Q Consensus        80 l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~  127 (151)
                      +++++..+..+++|+.|++++|.++.+|..+..+++|+.+++++|+..
T Consensus       203 l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             CCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence            999888899999999999999999999988889999999999999754

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.50  E-value=1.4e-13  Score=107.78  Aligned_cols=112  Identities=22%  Similarity=0.332  Sum_probs=67.8

Q ss_pred             ChhccCcccccccccccccc-eec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-cC
Q 041851            8 PDELGNLEALWSLHAIGTAI-REV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-LP   84 (151)
Q Consensus         8 p~~~~~l~~L~~L~l~~~~i-~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~   84 (151)
                      |..+..+++|++|++++|.. ..+ |..+..+++|+.|++++|.    +....|  +.++.+++|+.|++++|.+.+ ++
T Consensus        41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~----l~~~~p--~~~~~l~~L~~L~Ls~n~l~~~~~  114 (844)
T 3j0a_A           41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK----IYFLHP--DAFQGLFHLFELRLYFCGLSDAVL  114 (844)
T ss_dssp             SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC----CCEECT--TSSCSCSSCCCEECTTCCCSSCCS
T ss_pred             hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc----CcccCH--hHccCCcccCEeeCcCCCCCcccc
Confidence            45566677777777776643 344 4456667777777777655    343444  566666666666666666665 33


Q ss_pred             cc--cCCCCCCCEEeCCCCCCccC--CcchhccCccCEEeccCCc
Q 041851           85 EN--IGQLSSLEELDLQENNFERI--PESITQRSKLGRLSLRYCE  125 (151)
Q Consensus        85 ~~--~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~L~~l~l~~n~  125 (151)
                      ..  ++.+++|++|++++|.++.+  +..++.+++|+.|++++|.
T Consensus       115 ~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A          115 KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ  159 (844)
T ss_dssp             TTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred             cCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence            32  56666666666666666533  2345666666666666654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.49  E-value=3.7e-13  Score=98.97  Aligned_cols=126  Identities=22%  Similarity=0.295  Sum_probs=105.0

Q ss_pred             hhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccC
Q 041851            9 DELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIG   88 (151)
Q Consensus         9 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~   88 (151)
                      ..++++++|++|++++|.++.+| .+..+++|+.++++.|.    +.+ .+    ++.+++|+.+++++|.+++++  ++
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~----l~~-~~----~~~l~~L~~L~Ls~N~l~~~~--~~  103 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNN----ITT-LD----LSQNTNLTYLACDSNKLTNLD--VT  103 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSC----CSC-CC----CTTCTTCSEEECCSSCCSCCC--CT
T ss_pred             cChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCc----CCe-Ec----cccCCCCCEEECcCCCCceee--cC
Confidence            45677899999999999999886 68899999999999886    332 12    678899999999999999875  88


Q ss_pred             CCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCC-CCCCCcceEcccCCcccc
Q 041851           89 QLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLS-KLPCKLHELDAHHCTALE  149 (151)
Q Consensus        89 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~l~~l~l~~~~~l~  149 (151)
                      .+++|++|++++|.++.++  ++.+++|+.|++++|. +..++ ..+++|+.|++++|..+.
T Consensus       104 ~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~  162 (457)
T 3bz5_A          104 PLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEIDVSHNTQLTELDCHLNKKIT  162 (457)
T ss_dssp             TCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCCCTTCTTCCEEECTTCSCCC
T ss_pred             CCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceeccccCCcCCEEECCCCCccc
Confidence            9999999999999999875  7889999999999985 44454 235889999999885443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.49  E-value=4.2e-13  Score=98.61  Aligned_cols=125  Identities=24%  Similarity=0.374  Sum_probs=63.2

Q ss_pred             CCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCcc
Q 041851            4 LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRL   83 (151)
Q Consensus         4 l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~   83 (151)
                      +..+| .++.+++|++|++++|.++.+|..   ..+|+.+++++|.    +.+ .|   .++.+++|+.+++++|.++++
T Consensus       143 l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~----l~~-l~---~~~~l~~L~~L~l~~N~l~~l  210 (454)
T 1jl5_A          143 LEKLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQ----LEE-LP---ELQNLPFLTAIYADNNSLKKL  210 (454)
T ss_dssp             CSSCC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC----CSS-CC---CCTTCTTCCEEECCSSCCSSC
T ss_pred             CCCCc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCc----CCc-Cc---cccCCCCCCEEECCCCcCCcC
Confidence            34444 355555555555555555544432   2345555555443    111 12   345566666666666665554


Q ss_pred             CcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCCCCCcceEcccCC
Q 041851           84 PENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHC  145 (151)
Q Consensus        84 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~l~~~  145 (151)
                      |..   .++|+.|++++|.++.+|. ++.+++|+.+++++|. +..+|..+.+++.|++++|
T Consensus       211 ~~~---~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~N  267 (454)
T 1jl5_A          211 PDL---PLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDN  267 (454)
T ss_dssp             CCC---CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSC-CSSCCSCCTTCCEEECCSS
T ss_pred             CCC---cCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCc-CCcccccccccCEEECCCC
Confidence            432   1355555565555555552 5555666666666653 3444444455555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.49  E-value=2.1e-13  Score=88.07  Aligned_cols=100  Identities=20%  Similarity=0.312  Sum_probs=64.9

Q ss_pred             cccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcc-cCCCCCCCEE
Q 041851           18 WSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPEN-IGQLSSLEEL   96 (151)
Q Consensus        18 ~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L   96 (151)
                      +.++++++.++.+|..+.  .+++.|++++|.    +....|  ..+..+++|+.|++++|.+++++.. +..+++|+.|
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~----l~~~~~--~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L   86 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ----ITKLEP--GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL   86 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC----ccccCH--HHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence            456677777766665442  567777777665    333334  5566677777777777777775543 4567777777


Q ss_pred             eCCCCCCccCCcc-hhccCccCEEeccCCc
Q 041851           97 DLQENNFERIPES-ITQRSKLGRLSLRYCE  125 (151)
Q Consensus        97 ~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~  125 (151)
                      ++++|.++.+|.. +..+++|+.|++++|+
T Consensus        87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             ECCCCccceeCHHHhccccCCCEEEeCCCC
Confidence            7777777766553 6666777777777765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.49  E-value=8.4e-14  Score=107.54  Aligned_cols=114  Identities=20%  Similarity=0.214  Sum_probs=90.0

Q ss_pred             ccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCCCCCCEEeCCCCCCc
Q 041851           25 TAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFE  104 (151)
Q Consensus        25 ~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~  104 (151)
                      |.+...+..+..+..|+.|++++|.    +. .+|  ..+..+++|+.|++++|.++.+|..++.+++|+.|+|++|.++
T Consensus       211 n~~~~~~~~~~~l~~L~~L~Ls~n~----l~-~l~--~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~  283 (727)
T 4b8c_D          211 NRMVMPKDSKYDDQLWHALDLSNLQ----IF-NIS--ANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT  283 (727)
T ss_dssp             -----------CCCCCCEEECTTSC----CS-CCC--GGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS
T ss_pred             cceecChhhhccCCCCcEEECCCCC----CC-CCC--hhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC
Confidence            3333345568889999999999886    33 344  5556889999999999999999999999999999999999999


Q ss_pred             cCCcchhccCccCEEeccCCcccccCCCCC---CCcceEcccCCc
Q 041851          105 RIPESITQRSKLGRLSLRYCERLQSLSKLP---CKLHELDAHHCT  146 (151)
Q Consensus       105 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~---~~l~~l~l~~~~  146 (151)
                      .+|..++.+++|+.|++++|. ++.+|..+   ++|+.|+++++.
T Consensus       284 ~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          284 SLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             SCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSC
T ss_pred             ccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCc
Confidence            999999999999999999984 67888643   788999999876

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.49  E-value=1.6e-16  Score=104.73  Aligned_cols=131  Identities=21%  Similarity=0.226  Sum_probs=103.4

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      .++.+|..+..+++|++|++++|.++.+| .+..+++|+.+++++|.    +. .+|  ..+..+++|+.+++++|.+++
T Consensus        36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~----l~-~l~--~~~~~~~~L~~L~L~~N~l~~  107 (198)
T 1ds9_A           36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL----IK-KIE--NLDAVADTLEELWISYNQIAS  107 (198)
T ss_dssp             TCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE----EC-SCS--SHHHHHHHCSEEEEEEEECCC
T ss_pred             cHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC----cc-ccc--chhhcCCcCCEEECcCCcCCc
Confidence            35667778889999999999999998887 78889999999999886    33 344  455566889999999999998


Q ss_pred             cCcccCCCCCCCEEeCCCCCCccCCc--chhccCccCEEeccCCcccccCCC-------------CCCCcceEcc
Q 041851           83 LPENIGQLSSLEELDLQENNFERIPE--SITQRSKLGRLSLRYCERLQSLSK-------------LPCKLHELDA  142 (151)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~-------------~~~~l~~l~l  142 (151)
                      ++ .+..+++|+.|++++|.++.++.  .+..+++|+.+++++|+.....|.             .+++|+.|+-
T Consensus       108 l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~  181 (198)
T 1ds9_A          108 LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred             CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence            76 67788999999999999886654  677889999999999875444332             1367777763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.48  E-value=1.5e-13  Score=103.45  Aligned_cols=111  Identities=16%  Similarity=0.150  Sum_probs=95.7

Q ss_pred             ccCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            2 FHLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         2 ~~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      .+|..+|. ++.+++|+.|++++|.++.+|..+..+++|+.|+++.|.    +.+ +|   .++.+++|+.|++++|.++
T Consensus       451 n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~----l~~-lp---~l~~l~~L~~L~Ls~N~l~  521 (567)
T 1dce_A          451 KDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA----LEN-VD---GVANLPRLQELLLCNNRLQ  521 (567)
T ss_dssp             SCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC----CCC-CG---GGTTCSSCCEEECCSSCCC
T ss_pred             CCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC----CCC-Cc---ccCCCCCCcEEECCCCCCC
Confidence            36778887 899999999999999999999999999999999999887    332 23   5788999999999999999


Q ss_pred             cc--CcccCCCCCCCEEeCCCCCCccCCcch----hccCccCEEec
Q 041851           82 RL--PENIGQLSSLEELDLQENNFERIPESI----TQRSKLGRLSL  121 (151)
Q Consensus        82 ~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~~L~~l~l  121 (151)
                      ++  |..++.+++|+.|++++|.++..|+..    ..+++|+.|++
T Consensus       522 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            96  889999999999999999998766533    34788988864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.48  E-value=4.2e-13  Score=88.04  Aligned_cols=120  Identities=18%  Similarity=0.257  Sum_probs=98.2

Q ss_pred             ccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccC-cccCCCCCCCE
Q 041851           17 LWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLP-ENIGQLSSLEE   95 (151)
Q Consensus        17 L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~-~~~~~l~~L~~   95 (151)
                      -+.++++++.++.+|..+  .++++.+++.+|.    +. .+|  ..+..+++|+.|++++|.+++++ ..+..+++|+.
T Consensus        12 ~~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~----i~-~ip--~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~   82 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPKGI--PRDVTELYLDGNQ----FT-LVP--KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT   82 (193)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCCEEECCSSC----CC-SCC--GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCEEEcCCCCCCcCCCCC--CCCCCEEECCCCc----Cc-hhH--HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCE
Confidence            357889999999888654  3689999999886    33 445  67888999999999999999955 56889999999


Q ss_pred             EeCCCCCCccCCc-chhccCccCEEeccCCcccccCCCC----CCCcceEcccCCc
Q 041851           96 LDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLSKL----PCKLHELDAHHCT  146 (151)
Q Consensus        96 L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~----~~~l~~l~l~~~~  146 (151)
                      |++++|.++.++. .+..+++|+.|++++|. +..+|..    +++|+.|++.+++
T Consensus        83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             EECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence            9999999996655 68899999999999985 5566642    4789999998654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.48  E-value=3.1e-13  Score=86.97  Aligned_cols=101  Identities=23%  Similarity=0.353  Sum_probs=68.5

Q ss_pred             ccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCc-ccCCCCCCCE
Q 041851           17 LWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPE-NIGQLSSLEE   95 (151)
Q Consensus        17 L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~l~~L~~   95 (151)
                      .+.++++++.++.+|..+  ..+++.+++++|.    +....+  ..+..+++|+.|++++|.+++++. .+..+++|++
T Consensus        11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~----i~~~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~   82 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQ----ITKLEP--GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ   82 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSSC----CCCCCT--TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCEEEeCCCCcCccCccC--CCCCcEEEcCCCc----CCccCh--hhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence            456777777777766544  3667777777665    443444  556677777777777777777554 3467777777


Q ss_pred             EeCCCCCCccCCc-chhccCccCEEeccCCc
Q 041851           96 LDLQENNFERIPE-SITQRSKLGRLSLRYCE  125 (151)
Q Consensus        96 L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~  125 (151)
                      |++++|.++.++. .+..+++|+.|++++|+
T Consensus        83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            7777777776655 46667777777777775

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.47  E-value=7.6e-13  Score=99.61  Aligned_cols=121  Identities=30%  Similarity=0.409  Sum_probs=58.4

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      ++..+|..+.  ++|+.|++++|.++.+|   ..+++|+.|+++.|.    +.. +|  . +..  +|+.|++++|.+++
T Consensus        70 ~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~----l~~-ip--~-l~~--~L~~L~Ls~N~l~~  134 (571)
T 3cvr_A           70 NLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR----LST-LP--E-LPA--SLKHLDVDNNQLTM  134 (571)
T ss_dssp             CCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC----CSC-CC--C-CCT--TCCEEECCSSCCSC
T ss_pred             CCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC----CCC-cc--h-hhc--CCCEEECCCCcCCC
Confidence            3555665442  56777777777666665   335666666666654    221 22  2 222  45555555555554


Q ss_pred             cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCCCCCcceEcccCC
Q 041851           83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHC  145 (151)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~l~~~  145 (151)
                      +|.   .+++|+.|++++|.++.+|.   .+++|+.|++++|. +..+|.+.++|+.|++++|
T Consensus       135 lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N  190 (571)
T 3cvr_A          135 LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTN  190 (571)
T ss_dssp             CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred             CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcchhhCCCCEEECcCC
Confidence            443   34444445554444444443   23344444444442 2223332234444444433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.47  E-value=6.6e-15  Score=103.79  Aligned_cols=81  Identities=20%  Similarity=0.295  Sum_probs=38.5

Q ss_pred             CCCcccEEEcccC-CCCc--cCcccCCCC-CCCEEeCCCCC--Cc--cCCcchhccCccCEEeccCCcccc-cCCC---C
Q 041851           66 GLHTLTYLNLTDC-GITR--LPENIGQLS-SLEELDLQENN--FE--RIPESITQRSKLGRLSLRYCERLQ-SLSK---L  133 (151)
Q Consensus        66 ~~~~L~~l~l~~~-~l~~--~~~~~~~l~-~L~~L~l~~n~--~~--~~~~~~~~~~~L~~l~l~~n~~~~-~~~~---~  133 (151)
                      .+++|+.|++++| .+++  ++..+..++ +|++|++++|.  ++  .++..+..+++|+.|++++|..+. ..+.   .
T Consensus       166 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~  245 (336)
T 2ast_B          166 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ  245 (336)
T ss_dssp             HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred             cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC
Confidence            3445555555555 4443  333444455 55555555552  22  334444455555555555554221 1111   1


Q ss_pred             CCCcceEcccCCc
Q 041851          134 PCKLHELDAHHCT  146 (151)
Q Consensus       134 ~~~l~~l~l~~~~  146 (151)
                      .++|++|++++|.
T Consensus       246 l~~L~~L~l~~~~  258 (336)
T 2ast_B          246 LNYLQHLSLSRCY  258 (336)
T ss_dssp             CTTCCEEECTTCT
T ss_pred             CCCCCEeeCCCCC
Confidence            2556666666554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.46  E-value=5.9e-13  Score=100.23  Aligned_cols=100  Identities=26%  Similarity=0.379  Sum_probs=48.2

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      +|..+|   ..+++|+.|++++|.++.+|. +..  +|+.|++++|.    +.+ +|  .   .+++|+.|++++|.+++
T Consensus        91 ~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~----l~~-lp--~---~l~~L~~L~Ls~N~l~~  154 (571)
T 3cvr_A           91 ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ----LTM-LP--E---LPALLEYINADNNQLTM  154 (571)
T ss_dssp             CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC----CSC-CC--C---CCTTCCEEECCSSCCSC
T ss_pred             CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc----CCC-CC--C---cCccccEEeCCCCccCc
Confidence            455555   345666777777776666555 332  56666666554    221 22  2   23444444444444444


Q ss_pred             cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCC
Q 041851           83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYC  124 (151)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n  124 (151)
                      +|.   .+++|+.|++++|.++.+|. +.  ++|+.|++++|
T Consensus       155 lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N  190 (571)
T 3cvr_A          155 LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN  190 (571)
T ss_dssp             CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS
T ss_pred             CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC
Confidence            433   23444444444444444433 22  34444444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.46  E-value=1.5e-12  Score=84.07  Aligned_cols=122  Identities=21%  Similarity=0.300  Sum_probs=98.4

Q ss_pred             cccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCc-ccCCCCCCC
Q 041851           16 ALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPE-NIGQLSSLE   94 (151)
Q Consensus        16 ~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~l~~L~   94 (151)
                      ..+.++.+++.++.+|..+  .++++.+++++|.    +....+  ..+..+++|+.+++++|.+++++. .+..+++|+
T Consensus         8 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~----l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~   79 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNK----LQSLPH--GVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT   79 (177)
T ss_dssp             ETTEEECCSSCCSSCCTTC--CTTCSEEECCSSC----CCCCCT--TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCEEEecCCCCccCCCCC--CCCCcEEEeCCCc----ccEeCH--HHhcCcccccEEECCCCcceEeChhHccCCCccC
Confidence            3567889999998888543  4789999999886    443334  567889999999999999998665 468999999


Q ss_pred             EEeCCCCCCccCCc-chhccCccCEEeccCCcccccCCCC----CCCcceEcccCCc
Q 041851           95 ELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLSKL----PCKLHELDAHHCT  146 (151)
Q Consensus        95 ~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~----~~~l~~l~l~~~~  146 (151)
                      .|++++|.++.++. .+..+++|+.|++++|. +..+|..    +++|++|++++++
T Consensus        80 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           80 ILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence            99999999997766 46788999999999985 5566642    4789999998775

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.46  E-value=6.6e-13  Score=97.66  Aligned_cols=104  Identities=26%  Similarity=0.329  Sum_probs=47.1

Q ss_pred             hccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCC
Q 041851           10 ELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQ   89 (151)
Q Consensus        10 ~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~   89 (151)
                      .+..+++|++|++++|.++..++ +..+++|+.+++++|..    .+ .+   .+..+++|+.+++++|.+++++. +..
T Consensus       238 ~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l----~~-~~---~~~~l~~L~~L~L~~n~l~~~~~-~~~  307 (466)
T 1o6v_A          238 TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQI----SN-IS---PLAGLTALTNLELNENQLEDISP-ISN  307 (466)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC----CC-CG---GGTTCTTCSEEECCSSCCSCCGG-GGG
T ss_pred             hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCcc----Cc-cc---cccCCCccCeEEcCCCcccCchh-hcC
Confidence            34555666666666666654433 45556666666665531    11 11   13334444444444444444322 334


Q ss_pred             CCCCCEEeCCCCCCccCCcchhccCccCEEeccCC
Q 041851           90 LSSLEELDLQENNFERIPESITQRSKLGRLSLRYC  124 (151)
Q Consensus        90 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n  124 (151)
                      +++|+.|++++|.++..+. +..+++|+.|++++|
T Consensus       308 l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          308 LKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNN  341 (466)
T ss_dssp             CTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS
T ss_pred             CCCCCEEECcCCcCCCchh-hccCccCCEeECCCC
Confidence            4444444444444443222 333344444444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.44  E-value=2e-12  Score=95.14  Aligned_cols=80  Identities=29%  Similarity=0.349  Sum_probs=52.8

Q ss_pred             CCCCCcccEEEcccCCCCccCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCC-CCCCCcceEcc
Q 041851           64 LDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLS-KLPCKLHELDA  142 (151)
Q Consensus        64 ~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~l~~l~l  142 (151)
                      +..+++|+.+++++|.+++++. +..+++|+.|++++|.++.++. +..+++|+.|++++|......| ..+++|+.|++
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l  338 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF  338 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEEC
T ss_pred             hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeEC
Confidence            5566777777777777776554 6677777777777777776554 6677788888888775332222 12366666666


Q ss_pred             cCC
Q 041851          143 HHC  145 (151)
Q Consensus       143 ~~~  145 (151)
                      ++|
T Consensus       339 ~~n  341 (466)
T 1o6v_A          339 YNN  341 (466)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            655

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.44  E-value=4.3e-13  Score=99.35  Aligned_cols=117  Identities=13%  Similarity=0.081  Sum_probs=97.9

Q ss_pred             cCCCC-ChhccCccccccccccccccee-cChhhh-cCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCC
Q 041851            3 HLQRL-PDELGNLEALWSLHAIGTAIRE-VPSSFF-RLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCG   79 (151)
Q Consensus         3 ~l~~l-p~~~~~l~~L~~L~l~~~~i~~-~~~~~~-~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~   79 (151)
                      ++..+ |..++.+++|++|++++|.++. .|..+. .+++|+.|++++|.    +.+. +   ....+++|+.|++++|.
T Consensus       131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~----l~~~-~---~~~~l~~L~~L~Ls~N~  202 (487)
T 3oja_A          131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF----IYDV-K---GQVVFAKLKTLDLSSNK  202 (487)
T ss_dssp             CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC----CCEE-E---CCCCCTTCCEEECCSSC
T ss_pred             CCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc----cccc-c---ccccCCCCCEEECCCCC
Confidence            34444 4567889999999999999985 455665 78999999999887    3332 2   23468899999999999


Q ss_pred             CCccCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCccc
Q 041851           80 ITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERL  127 (151)
Q Consensus        80 l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~  127 (151)
                      ++++++.+..+++|+.|++++|.++.+|..+..+++|+.+++++|+..
T Consensus       203 l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             CCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence            999888899999999999999999999998889999999999999754

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.43  E-value=2.1e-12  Score=94.89  Aligned_cols=77  Identities=22%  Similarity=0.336  Sum_probs=43.8

Q ss_pred             CCCCCcccEEEcccCCCCccCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCCCCCcceEccc
Q 041851           64 LDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAH  143 (151)
Q Consensus        64 ~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~l~  143 (151)
                      ++.+++|+.+++++|.++++|...   .+|++|++++|.++.+| .++.+++|+.+++++|. +..+|..+.+|+.|+++
T Consensus       149 ~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~  223 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAG  223 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECC
T ss_pred             cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCCcCcccEEECc
Confidence            555666666666666666554322   35666666666666555 35556666666666653 34455544555555555


Q ss_pred             CC
Q 041851          144 HC  145 (151)
Q Consensus       144 ~~  145 (151)
                      +|
T Consensus       224 ~n  225 (454)
T 1jl5_A          224 NN  225 (454)
T ss_dssp             SS
T ss_pred             CC
Confidence            44

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.42  E-value=2.6e-14  Score=100.74  Aligned_cols=56  Identities=29%  Similarity=0.404  Sum_probs=25.4

Q ss_pred             cccEEEcccC--CCCc--cCcccCCCCCCCEEeCCCCC-Cc-cCCcchhccCccCEEeccCC
Q 041851           69 TLTYLNLTDC--GITR--LPENIGQLSSLEELDLQENN-FE-RIPESITQRSKLGRLSLRYC  124 (151)
Q Consensus        69 ~L~~l~l~~~--~l~~--~~~~~~~l~~L~~L~l~~n~-~~-~~~~~~~~~~~L~~l~l~~n  124 (151)
                      +|+.|++++|  .+++  ++..+..+++|+.|++++|. ++ ..+..+..+++|+.|++++|
T Consensus       196 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            4555555554  2331  33334444555555555544 33 33334444445555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.42  E-value=1e-12  Score=84.83  Aligned_cols=98  Identities=23%  Similarity=0.332  Sum_probs=82.3

Q ss_pred             cCCCCChhccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      ++..+|..+.  +++++|++++|.++.+ |..+..+++|+.|++++|+    +....+  ..|..+++|+.|++++|.++
T Consensus        23 ~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~----l~~i~~--~~~~~l~~L~~L~L~~N~l~   94 (174)
T 2r9u_A           23 RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK----LTAIPT--GVFDKLTQLTQLDLNDNHLK   94 (174)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCCC
T ss_pred             CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC----CCccCh--hHhCCcchhhEEECCCCccc
Confidence            5788888664  8999999999999976 5578899999999999887    443333  45788999999999999999


Q ss_pred             ccCcc-cCCCCCCCEEeCCCCCCccCCc
Q 041851           82 RLPEN-IGQLSSLEELDLQENNFERIPE  108 (151)
Q Consensus        82 ~~~~~-~~~l~~L~~L~l~~n~~~~~~~  108 (151)
                      +++.. +..+++|++|++++|.+.-.+.
T Consensus        95 ~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           95 SIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             eeCHHHhccccCCCEEEeCCCCcccccc
Confidence            97764 8899999999999999885554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=2.1e-12  Score=83.00  Aligned_cols=96  Identities=23%  Similarity=0.351  Sum_probs=81.2

Q ss_pred             cCCCCChhccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      ++..+|..+.  +++++|++++|.++.+ |..+..+++|+.|++++|+    +....+  ..|..+++|+.|++++|.++
T Consensus        20 ~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~----l~~l~~--~~f~~l~~L~~L~L~~N~l~   91 (170)
T 3g39_A           20 SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ----LTVLPA--GVFDKLTQLTQLSLNDNQLK   91 (170)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCCC
T ss_pred             CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC----cCccCh--hhccCCCCCCEEECCCCccC
Confidence            5778887663  8899999999999977 5578899999999999887    444444  56789999999999999999


Q ss_pred             ccCc-ccCCCCCCCEEeCCCCCCccC
Q 041851           82 RLPE-NIGQLSSLEELDLQENNFERI  106 (151)
Q Consensus        82 ~~~~-~~~~l~~L~~L~l~~n~~~~~  106 (151)
                      +++. .+..+++|+.|++++|.++-.
T Consensus        92 ~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           92 SIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             EeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9765 588999999999999988733

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.39  E-value=5.2e-12  Score=96.02  Aligned_cols=87  Identities=24%  Similarity=0.279  Sum_probs=49.5

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      ++..+|..+.  ++|+.|++++|.++.+|.   .+++|+.|++++|..    . .+|  .   .+++|+.|++++|.+++
T Consensus        51 ~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l----~-~lp--~---~l~~L~~L~Ls~N~l~~  115 (622)
T 3g06_A           51 GLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL----T-SLP--V---LPPGLLELSIFSNPLTH  115 (622)
T ss_dssp             CCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCC----S-CCC--C---CCTTCCEEEECSCCCCC
T ss_pred             CcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcC----C-cCC--C---CCCCCCEEECcCCcCCC
Confidence            5666776554  677778888777776665   466777777776652    1 122  1   33455555555555555


Q ss_pred             cCcccCCCCCCCEEeCCCCCCccCC
Q 041851           83 LPENIGQLSSLEELDLQENNFERIP  107 (151)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~n~~~~~~  107 (151)
                      ++.   .+++|+.|++++|.++.+|
T Consensus       116 l~~---~l~~L~~L~L~~N~l~~lp  137 (622)
T 3g06_A          116 LPA---LPSGLCKLWIFGNQLTSLP  137 (622)
T ss_dssp             CCC---CCTTCCEEECCSSCCSCCC
T ss_pred             CCC---CCCCcCEEECCCCCCCcCC
Confidence            443   2344444444444444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.38  E-value=1.9e-12  Score=92.07  Aligned_cols=88  Identities=28%  Similarity=0.331  Sum_probs=69.1

Q ss_pred             CCCCC-CcccEEEcccCCCCccCcccCCCCCCCEEeCC-CCCCccCCc-chhccCccCEEeccCCcccccCCC-CCCCcc
Q 041851           63 SLDGL-HTLTYLNLTDCGITRLPENIGQLSSLEELDLQ-ENNFERIPE-SITQRSKLGRLSLRYCERLQSLSK-LPCKLH  138 (151)
Q Consensus        63 ~~~~~-~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~-~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~-~~~~l~  138 (151)
                      .+..+ ..++.+++++|.+++++.......+++.+++. +|.++.+|. .+..+++|+.|++++| .++.+|. .+.+|+
T Consensus       148 ~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~  226 (350)
T 4ay9_X          148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLK  226 (350)
T ss_dssp             SSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCC
T ss_pred             chhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccch
Confidence            34444 36888999999999988877778899999997 467778876 5678899999999998 4778875 468888


Q ss_pred             eEcccCCcccccC
Q 041851          139 ELDAHHCTALESL  151 (151)
Q Consensus       139 ~l~l~~~~~l~~~  151 (151)
                      +|.+.++..++++
T Consensus       227 ~L~~l~~~~l~~l  239 (350)
T 4ay9_X          227 KLRARSTYNLKKL  239 (350)
T ss_dssp             EEECTTCTTCCCC
T ss_pred             HhhhccCCCcCcC
Confidence            8888877776643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.37  E-value=2.9e-12  Score=91.12  Aligned_cols=119  Identities=13%  Similarity=0.210  Sum_probs=76.6

Q ss_pred             cCCCCChhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccE-EEcccCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTY-LNLTDCGI   80 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~-l~l~~~~l   80 (151)
                      +++++|..+  .+++++|++++|.++.+|. .|..+++|+.|++++|.    +.+..+. ..|..++++.. +.+..|.+
T Consensus        20 ~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~----i~~~i~~-~~f~~L~~l~~~l~~~~N~l   92 (350)
T 4ay9_X           20 KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND----VLEVIEA-DVFSNLPKLHEIRIEKANNL   92 (350)
T ss_dssp             TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT----TCCEECT-TSBCSCTTCCEEEEEEETTC
T ss_pred             CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC----CCCccCh-hHhhcchhhhhhhcccCCcc
Confidence            578899766  3689999999999998876 68899999999999886    2222220 34556665543 44555667


Q ss_pred             Ccc-CcccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccc
Q 041851           81 TRL-PENIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQ  128 (151)
Q Consensus        81 ~~~-~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~  128 (151)
                      +.+ +..+..+++|++|++++|.++.++. .+.....+..+++.++..+.
T Consensus        93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~  142 (350)
T 4ay9_X           93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH  142 (350)
T ss_dssp             CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC
T ss_pred             cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc
Confidence            664 3456667777777777776664443 22233344445544433333

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.34  E-value=1.5e-11  Score=93.47  Aligned_cols=41  Identities=22%  Similarity=0.250  Sum_probs=29.2

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSR   49 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~   49 (151)
                      +|..+|.   .+++|++|++++|.++.+|.   .+++|+.|++..|.
T Consensus        72 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~  112 (622)
T 3g06_A           72 NLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP  112 (622)
T ss_dssp             CCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred             CCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence            4556665   46778888888888777765   56777777777664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.31  E-value=8.2e-12  Score=88.47  Aligned_cols=95  Identities=23%  Similarity=0.207  Sum_probs=70.1

Q ss_pred             cCCCCChhccCccccccccccc-ccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIG-TAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI   80 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~-~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l   80 (151)
                      ++..+|. +..+++|+.|++++ |.++.++ ..+..+++|+.|+++.|.    +.+..+  ..|..+++|+.|+|++|.+
T Consensus        20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~----l~~~~~--~~~~~l~~L~~L~l~~N~l   92 (347)
T 2ifg_A           20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG----LRFVAP--DAFHFTPRLSRLNLSFNAL   92 (347)
T ss_dssp             CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC----CCEECT--TGGGSCSCCCEEECCSSCC
T ss_pred             CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc----cceeCH--HHhcCCcCCCEEeCCCCcc
Confidence            5777887 78888888888885 8888665 467778888888888776    444445  5677788888888888888


Q ss_pred             CccCcccCCCCCCCEEeCCCCCCc
Q 041851           81 TRLPENIGQLSSLEELDLQENNFE  104 (151)
Q Consensus        81 ~~~~~~~~~l~~L~~L~l~~n~~~  104 (151)
                      +++|........|+.|++.+|.+.
T Consensus        93 ~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           93 ESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             SCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ceeCHHHcccCCceEEEeeCCCcc
Confidence            876655444434888888888776

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.30  E-value=1.7e-13  Score=98.47  Aligned_cols=37  Identities=8%  Similarity=0.067  Sum_probs=16.1

Q ss_pred             cCccccccccccccccee-----cChhhhcCCCCCeeecccc
Q 041851           12 GNLEALWSLHAIGTAIRE-----VPSSFFRLNNIDLLSFQRS   48 (151)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~-----~~~~~~~l~~L~~l~l~~n   48 (151)
                      ..+++|++|++++|.++.     ++..+..+++|++|++++|
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n  132 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN  132 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC
Confidence            344444444444444442     2333344444444444433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.29  E-value=1.4e-11  Score=87.30  Aligned_cols=102  Identities=19%  Similarity=0.179  Sum_probs=84.8

Q ss_pred             cccccccc-cceecChhhhcCCCCCeeeccc-cccCCccccccccccCCCCCCcccEEEcccCCCCccC-cccCCCCCCC
Q 041851           18 WSLHAIGT-AIREVPSSFFRLNNIDLLSFQR-SRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLP-ENIGQLSSLE   94 (151)
Q Consensus        18 ~~L~l~~~-~i~~~~~~~~~l~~L~~l~l~~-n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~-~~~~~l~~L~   94 (151)
                      ..++.+++ .++.+|. +..+.+|+.|++++ |.    +....+  ..|..+++|+.|++++|.+++++ ..+..+++|+
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~----l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~   83 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQH----LQHLEL--RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS   83 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSS----CCEECG--GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCC----CCCcCh--hHhccccCCCEEECCCCccceeCHHHhcCCcCCC
Confidence            35677887 8889998 88999999999995 76    444444  67889999999999999999954 5778999999


Q ss_pred             EEeCCCCCCccCCcchhccCccCEEeccCCcc
Q 041851           95 ELDLQENNFERIPESITQRSKLGRLSLRYCER  126 (151)
Q Consensus        95 ~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~  126 (151)
                      .|+|++|.++.+|..+.....|+.|++.+|+.
T Consensus        84 ~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~  115 (347)
T 2ifg_A           84 RLNLSFNALESLSWKTVQGLSLQELVLSGNPL  115 (347)
T ss_dssp             EEECCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             EEeCCCCccceeCHHHcccCCceEEEeeCCCc
Confidence            99999999998887555444599999999863

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.29  E-value=1.8e-13  Score=98.32  Aligned_cols=137  Identities=20%  Similarity=0.206  Sum_probs=70.9

Q ss_pred             CChhccCcccccccccccccceec-Ch----hhhcC---------CCCCeeeccccccCCcccccccc-ccCCCCCCccc
Q 041851            7 LPDELGNLEALWSLHAIGTAIREV-PS----SFFRL---------NNIDLLSFQRSRGHKQMSLSLPI-TLSLDGLHTLT   71 (151)
Q Consensus         7 lp~~~~~l~~L~~L~l~~~~i~~~-~~----~~~~l---------~~L~~l~l~~n~~~~~~~~~~~~-~~~~~~~~~L~   71 (151)
                      +|..+..+++|++|++++|.++.. +.    .+..+         ++|+++++++|....   ...+. ...+..+++|+
T Consensus       114 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~---~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN---GSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG---GGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc---HHHHHHHHHHHhCCCcC
Confidence            444555666666666666666521 11    22222         566666666554211   11110 01233455666


Q ss_pred             EEEcccCCCCc------cCcccCCCCCCCEEeCCCCCC-----ccCCcchhccCccCEEeccCCccccc----CCC----
Q 041851           72 YLNLTDCGITR------LPENIGQLSSLEELDLQENNF-----ERIPESITQRSKLGRLSLRYCERLQS----LSK----  132 (151)
Q Consensus        72 ~l~l~~~~l~~------~~~~~~~l~~L~~L~l~~n~~-----~~~~~~~~~~~~L~~l~l~~n~~~~~----~~~----  132 (151)
                      .|++++|.+++      .+..+..+++|+.|++++|.+     ..+|..+..+++|+.|++++|.....    ++.    
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  270 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  270 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence            66666666652      122555666666666666666     33455556666666666666643221    222    


Q ss_pred             -CCCCcceEcccCCc
Q 041851          133 -LPCKLHELDAHHCT  146 (151)
Q Consensus       133 -~~~~l~~l~l~~~~  146 (151)
                       ..++|++|++++|.
T Consensus       271 ~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          271 LENIGLQTLRLQYNE  285 (386)
T ss_dssp             CSSCCCCEEECCSSC
T ss_pred             ccCCCeEEEECcCCc
Confidence             14566666666654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.25  E-value=5.8e-14  Score=92.34  Aligned_cols=126  Identities=17%  Similarity=0.215  Sum_probs=99.8

Q ss_pred             ccCcccccccccccccce-ecCh------hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCcc
Q 041851           11 LGNLEALWSLHAIGTAIR-EVPS------SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRL   83 (151)
Q Consensus        11 ~~~l~~L~~L~l~~~~i~-~~~~------~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~   83 (151)
                      +.....++.++++++.+. ..|.      .+..+++|+.+++++|.    +.. .|   .+..+++|+.+++++|.++++
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~----l~~-l~---~~~~l~~L~~L~l~~n~l~~l   85 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN----IEK-IS---SLSGMENLRILSLGRNLIKKI   85 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE----ESC-CC---CHHHHTTCCEEEEEEEEECSC
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC----Ccc-cc---ccccCCCCCEEECCCCCcccc
Confidence            345567777788777765 4444      88999999999999886    322 22   456788999999999999998


Q ss_pred             CcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC-----CCCCcceEcccCCc
Q 041851           84 PENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK-----LPCKLHELDAHHCT  146 (151)
Q Consensus        84 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~-----~~~~l~~l~l~~~~  146 (151)
                      |..+..+++|+.|++++|.++.+| .+..+++|+.|++++|. +..++.     .+++|++|++++|.
T Consensus        86 ~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A           86 ENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             SSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             cchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence            887778899999999999999876 68888999999999985 444332     35889999998774

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.23  E-value=1.3e-12  Score=93.31  Aligned_cols=36  Identities=11%  Similarity=0.130  Sum_probs=18.7

Q ss_pred             cccccccccccccceecC-----hhhhcCC-CCCeeeccccc
Q 041851           14 LEALWSLHAIGTAIREVP-----SSFFRLN-NIDLLSFQRSR   49 (151)
Q Consensus        14 l~~L~~L~l~~~~i~~~~-----~~~~~l~-~L~~l~l~~n~   49 (151)
                      .++|++|++++|.++..+     ..+..++ +|+.+++++|.
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~   62 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS   62 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC
Confidence            334666666666555433     2344455 55666665554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.18  E-value=6.9e-12  Score=89.48  Aligned_cols=41  Identities=15%  Similarity=0.241  Sum_probs=23.5

Q ss_pred             hhccCcc-cccccccccccceec-ChhhhcC-----CCCCeeeccccc
Q 041851            9 DELGNLE-ALWSLHAIGTAIREV-PSSFFRL-----NNIDLLSFQRSR   49 (151)
Q Consensus         9 ~~~~~l~-~L~~L~l~~~~i~~~-~~~~~~l-----~~L~~l~l~~n~   49 (151)
                      +.+..++ +|++|++++|.++.. +..+..+     ++|+.+++++|.
T Consensus        44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~   91 (362)
T 3goz_A           44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF   91 (362)
T ss_dssp             HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred             HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence            3445555 667777777666633 3344443     666666666554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.11  E-value=4.3e-12  Score=92.84  Aligned_cols=37  Identities=14%  Similarity=0.077  Sum_probs=24.9

Q ss_pred             Cccccccccccccccee-----cChhhhcCCCCCeeeccccc
Q 041851           13 NLEALWSLHAIGTAIRE-----VPSSFFRLNNIDLLSFQRSR   49 (151)
Q Consensus        13 ~l~~L~~L~l~~~~i~~-----~~~~~~~l~~L~~l~l~~n~   49 (151)
                      .+++|++|++++|.++.     ++..+..+++|+++++++|.
T Consensus       254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  295 (461)
T 1z7x_W          254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE  295 (461)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred             CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence            46677777777777663     45556667777777777664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.06  E-value=8.6e-12  Score=91.24  Aligned_cols=116  Identities=15%  Similarity=0.066  Sum_probs=56.7

Q ss_pred             CChhccCcccccccccccccceecC-----hh-hhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851            7 LPDELGNLEALWSLHAIGTAIREVP-----SS-FFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI   80 (151)
Q Consensus         7 lp~~~~~l~~L~~L~l~~~~i~~~~-----~~-~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l   80 (151)
                      ++..+..+++|++|++++|.++...     +. +..+++|+.+++++|..........+  ..+..+++|+.+++++|.+
T Consensus       219 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--~~l~~~~~L~~L~Ls~n~i  296 (461)
T 1z7x_W          219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC--RVLRAKESLKELSLAGNEL  296 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH--HHHHHCTTCCEEECTTCCC
T ss_pred             HHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH--HHHhhCCCcceEECCCCCC
Confidence            4555666777888888877766321     11 12467778888776642110000122  3333455666666666655


Q ss_pred             Cc-cCc----ccC-CCCCCCEEeCCCCCCcc-----CCcchhccCccCEEeccCC
Q 041851           81 TR-LPE----NIG-QLSSLEELDLQENNFER-----IPESITQRSKLGRLSLRYC  124 (151)
Q Consensus        81 ~~-~~~----~~~-~l~~L~~L~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n  124 (151)
                      ++ .+.    .+. ..++|+.|++++|.++.     ++..+..+++|+.|++++|
T Consensus       297 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  351 (461)
T 1z7x_W          297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN  351 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred             chHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence            43 111    111 12355555555554441     2233334445555555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.83  E-value=2.4e-08  Score=70.29  Aligned_cols=73  Identities=19%  Similarity=0.269  Sum_probs=53.2

Q ss_pred             CCcccEEEcccCCCCccCc-ccCCCCCCCEEeCCCCCCccCCc-chhccCccC-EEeccCCcccccCCCC----CCCcce
Q 041851           67 LHTLTYLNLTDCGITRLPE-NIGQLSSLEELDLQENNFERIPE-SITQRSKLG-RLSLRYCERLQSLSKL----PCKLHE  139 (151)
Q Consensus        67 ~~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~-~l~l~~n~~~~~~~~~----~~~l~~  139 (151)
                      +++|+.+++.+|.++.+++ .+..+.+|+.+++..| ++.++. +|.++.+|+ .+++..  .+..++..    +.+|+.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCE
Confidence            5678888888888888654 5777889999999887 665544 677888888 888876  35555532    356666


Q ss_pred             Ecc
Q 041851          140 LDA  142 (151)
Q Consensus       140 l~l  142 (151)
                      +++
T Consensus       302 l~l  304 (329)
T 3sb4_A          302 VLA  304 (329)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.82  E-value=3.6e-10  Score=81.09  Aligned_cols=128  Identities=16%  Similarity=0.142  Sum_probs=70.6

Q ss_pred             cccccccccccccee--cChhhhcCCCCCeeeccccccCCcccccccc--ccCC-CCCCcccEEEcccCCCCc-----cC
Q 041851           15 EALWSLHAIGTAIRE--VPSSFFRLNNIDLLSFQRSRGHKQMSLSLPI--TLSL-DGLHTLTYLNLTDCGITR-----LP   84 (151)
Q Consensus        15 ~~L~~L~l~~~~i~~--~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~--~~~~-~~~~~L~~l~l~~~~l~~-----~~   84 (151)
                      ++|+.|++++|.++.  +..-...+.+|+.+++++|.    +.+....  ...+ ...++|+.|++++|.+++     ++
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~----l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~  176 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS----LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM  176 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC----CCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC----CCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence            467777777776652  11112234566777777654    2221110  0111 234567777777777764     33


Q ss_pred             cccCCCCCCCEEeCCCCCCcc-----CCcchhccCccCEEeccCCcccc----cCCC---CCCCcceEcccCCc
Q 041851           85 ENIGQLSSLEELDLQENNFER-----IPESITQRSKLGRLSLRYCERLQ----SLSK---LPCKLHELDAHHCT  146 (151)
Q Consensus        85 ~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~~~~----~~~~---~~~~l~~l~l~~~~  146 (151)
                      ..+...++|++|++++|.++.     +...+...++|+.|++++|....    .+..   ..++|++|++++|.
T Consensus       177 ~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          177 EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            344566777777777777662     23344555677777777775321    1111   12667777777664

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.81  E-value=1.5e-09  Score=81.62  Aligned_cols=128  Identities=19%  Similarity=0.078  Sum_probs=59.8

Q ss_pred             CcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCCCC
Q 041851           13 NLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSS   92 (151)
Q Consensus        13 ~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l~~   92 (151)
                      .+++|++|+++++.+..++..+..+++|+.+++....... ......  ..+..+++|+.+++.++....++..+..+++
T Consensus       218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-~~~~~~--~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~  294 (592)
T 3ogk_B          218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDI-GMPEKY--MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQ  294 (592)
T ss_dssp             HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCT-TCTTSS--SCCCCCTTCCEEEETTCCTTTGGGGGGGGGG
T ss_pred             hCCCCcEEeccCccHHHHHHHHhhhhHHHhhccccccccc-chHHHH--HHhhccccccccCccccchhHHHHHHhhcCC
Confidence            3444444444444444444444444444444444211000 001111  3344555666666665444445555556667


Q ss_pred             CCEEeCCCCCCc--cCCcchhccCccCEEeccCCcccccCC---CCCCCcceEccc
Q 041851           93 LEELDLQENNFE--RIPESITQRSKLGRLSLRYCERLQSLS---KLPCKLHELDAH  143 (151)
Q Consensus        93 L~~L~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~l~~l~l~  143 (151)
                      |++|++++|.++  .+...+..+++|+.|+++.+..-..++   ..+++|++|++.
T Consensus       295 L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             CCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             CcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence            777777766654  222234556666666665321111111   123556666666

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.79  E-value=5.4e-10  Score=84.10  Aligned_cols=19  Identities=21%  Similarity=0.345  Sum_probs=9.1

Q ss_pred             CcchhccCccCEEeccCCc
Q 041851          107 PESITQRSKLGRLSLRYCE  125 (151)
Q Consensus       107 ~~~~~~~~~L~~l~l~~n~  125 (151)
                      |..+..+++|+.|++++|.
T Consensus       286 ~~~~~~~~~L~~L~Ls~~~  304 (592)
T 3ogk_B          286 PILFPFAAQIRKLDLLYAL  304 (592)
T ss_dssp             GGGGGGGGGCCEEEETTCC
T ss_pred             HHHHhhcCCCcEEecCCCc
Confidence            3334444455555555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.66  E-value=2.7e-09  Score=76.53  Aligned_cols=112  Identities=17%  Similarity=0.156  Sum_probs=80.4

Q ss_pred             CcccccccccccccceecC-hhh-----hcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc----
Q 041851           13 NLEALWSLHAIGTAIREVP-SSF-----FRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR----   82 (151)
Q Consensus        13 ~l~~L~~L~l~~~~i~~~~-~~~-----~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~----   82 (151)
                      .+++|+.|++++|.++... ..+     ...++|+.|++++|.........++  ..+...++|+.|++++|.+++    
T Consensus       124 ~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~--~~L~~~~~L~~L~Ls~N~l~~~g~~  201 (372)
T 3un9_A          124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM--EGLAGNTSVTHLSLLHTGLGDEGLE  201 (372)
T ss_dssp             HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH--HHHHTCSSCCEEECTTSSCHHHHHH
T ss_pred             HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH--HHHhcCCCcCEEeCCCCCCCcHHHH
Confidence            4568999999999987432 222     2357899999998862110001122  344567889999999999985    


Q ss_pred             -cCcccCCCCCCCEEeCCCCCCcc-----CCcchhccCccCEEeccCCcc
Q 041851           83 -LPENIGQLSSLEELDLQENNFER-----IPESITQRSKLGRLSLRYCER  126 (151)
Q Consensus        83 -~~~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~~  126 (151)
                       +...+...++|+.|++++|.++.     +...+...++|+.|++++|..
T Consensus       202 ~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          202 LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence             34566778899999999999872     333455668999999999964

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.64  E-value=9.8e-08  Score=67.14  Aligned_cols=86  Identities=12%  Similarity=0.156  Sum_probs=49.3

Q ss_pred             CCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccC-cccCCCCCCC-EEeCCCCCCccCC-cchhcc
Q 041851           37 LNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLP-ENIGQLSSLE-ELDLQENNFERIP-ESITQR  113 (151)
Q Consensus        37 l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~-~~~~~l~~L~-~L~l~~n~~~~~~-~~~~~~  113 (151)
                      +++|+.+++..|.    +....+  ..|..+.+|+.+++..| ++.++ ..+..+.+|+ .+++.. .++.++ .+|.++
T Consensus       225 ~~~L~~l~L~~n~----i~~I~~--~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c  296 (329)
T 3sb4_A          225 MPNLVSLDISKTN----ATTIPD--FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGC  296 (329)
T ss_dssp             CTTCCEEECTTBC----CCEECT--TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTC
T ss_pred             cCCCeEEECCCCC----cceecH--hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCC
Confidence            5666677666554    222222  45666666777776665 55543 3555666676 666666 455333 456666


Q ss_pred             CccCEEeccCCcccccCC
Q 041851          114 SKLGRLSLRYCERLQSLS  131 (151)
Q Consensus       114 ~~L~~l~l~~n~~~~~~~  131 (151)
                      ++|+.++++.| .+..++
T Consensus       297 ~~L~~l~l~~n-~i~~I~  313 (329)
T 3sb4_A          297 DNLRYVLATGD-KITTLG  313 (329)
T ss_dssp             TTEEEEEECSS-CCCEEC
T ss_pred             ccCCEEEeCCC-ccCccc
Confidence            67777776554 244444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.63  E-value=6.4e-09  Score=67.59  Aligned_cols=112  Identities=18%  Similarity=0.167  Sum_probs=68.6

Q ss_pred             hccCcccccccccccc-ccee-----cChhhhcCCCCCeeeccccccCCccccccc--cccCCCCCCcccEEEcccCCCC
Q 041851           10 ELGNLEALWSLHAIGT-AIRE-----VPSSFFRLNNIDLLSFQRSRGHKQMSLSLP--ITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus        10 ~~~~l~~L~~L~l~~~-~i~~-----~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~--~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      .+...+.|++|++++| .+..     +...+...++|++|++++|.    +.+...  ..+.+...++|+.|++++|.++
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~----i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR----SNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC----CCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC----CChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            3455677888888887 6652     22344455678888888665    322211  0023334456788888888877


Q ss_pred             c-----cCcccCCCCCCCEEeC--CCCCCc-c----CCcchhccCccCEEeccCCc
Q 041851           82 R-----LPENIGQLSSLEELDL--QENNFE-R----IPESITQRSKLGRLSLRYCE  125 (151)
Q Consensus        82 ~-----~~~~~~~l~~L~~L~l--~~n~~~-~----~~~~~~~~~~L~~l~l~~n~  125 (151)
                      +     +...+...+.|++|++  ++|.++ .    +...+...++|+.|+++.|.
T Consensus       107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            5     3445666677888888  667776 2    23344455678888887764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.62  E-value=1.3e-08  Score=76.59  Aligned_cols=36  Identities=8%  Similarity=0.100  Sum_probs=20.1

Q ss_pred             Ccccccccccccccce-ecChhhh-cCCCCCeeecccc
Q 041851           13 NLEALWSLHAIGTAIR-EVPSSFF-RLNNIDLLSFQRS   48 (151)
Q Consensus        13 ~l~~L~~L~l~~~~i~-~~~~~~~-~l~~L~~l~l~~n   48 (151)
                      .+++|++|+++++.++ ..+..+. .+++|+.|++..|
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            4556667777666655 2223332 4566666666643

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.60  E-value=3.3e-09  Score=79.79  Aligned_cols=109  Identities=16%  Similarity=0.243  Sum_probs=59.8

Q ss_pred             ccCccccccccccccc-ceec---C------------hhhhcCCCCCeeeccccccCCccccccccccCCC-CCCcccEE
Q 041851           11 LGNLEALWSLHAIGTA-IREV---P------------SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLD-GLHTLTYL   73 (151)
Q Consensus        11 ~~~l~~L~~L~l~~~~-i~~~---~------------~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~-~~~~L~~l   73 (151)
                      +.++++|+.|+++++. +...   |            .-...+++|+.+++.++.    +.+..+  ..+. .+++|+.|
T Consensus        62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~----~~~~~~--~~l~~~~~~L~~L  135 (594)
T 2p1m_B           62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV----VTDDCL--ELIAKSFKNFKVL  135 (594)
T ss_dssp             HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB----CCHHHH--HHHHHHCTTCCEE
T ss_pred             HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE----EcHHHH--HHHHHhCCCCcEE
Confidence            4567778888887765 2111   1            113457788888888654    332222  2222 35667777


Q ss_pred             EcccC-CCCc--cCcccCCCCCCCEEeCCCCCCcc-CCcc----hhccCccCEEeccCCc
Q 041851           74 NLTDC-GITR--LPENIGQLSSLEELDLQENNFER-IPES----ITQRSKLGRLSLRYCE  125 (151)
Q Consensus        74 ~l~~~-~l~~--~~~~~~~l~~L~~L~l~~n~~~~-~~~~----~~~~~~L~~l~l~~n~  125 (151)
                      ++.+| .+++  ++.....+++|++|++++|.++. .+..    ...+++|+.|+++.|.
T Consensus       136 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          136 VLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             EEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred             eCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence            77766 3443  33333456677777777666442 1111    2244566666666653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.53  E-value=8e-08  Score=61.79  Aligned_cols=81  Identities=15%  Similarity=0.165  Sum_probs=52.9

Q ss_pred             cccEEEcccCCCCc-cCcccCCCCCCCEEeCCCCC-Cc-cCCcchhcc----CccCEEeccCCcccccCC----CCCCCc
Q 041851           69 TLTYLNLTDCGITR-LPENIGQLSSLEELDLQENN-FE-RIPESITQR----SKLGRLSLRYCERLQSLS----KLPCKL  137 (151)
Q Consensus        69 ~L~~l~l~~~~l~~-~~~~~~~l~~L~~L~l~~n~-~~-~~~~~~~~~----~~L~~l~l~~n~~~~~~~----~~~~~l  137 (151)
                      .|+.+++++|.+++ .-..+..+++|+.|+|++|. ++ .--..+..+    ++|+.|++++|..+++-.    ..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            57888888887776 33456777888888887774 55 222234432    368888888876554321    124778


Q ss_pred             ceEcccCCcccc
Q 041851          138 HELDAHHCTALE  149 (151)
Q Consensus       138 ~~l~l~~~~~l~  149 (151)
                      ++|++++|++++
T Consensus       142 ~~L~L~~c~~It  153 (176)
T 3e4g_A          142 KYLFLSDLPGVK  153 (176)
T ss_dssp             CEEEEESCTTCC
T ss_pred             CEEECCCCCCCC
Confidence            888888887765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.45  E-value=1.3e-07  Score=64.79  Aligned_cols=63  Identities=22%  Similarity=0.271  Sum_probs=33.8

Q ss_pred             CCcccEEEcccCCCCcc---CcccCCCCCCCEEeCCCCCCccCCcchhccC--ccCEEeccCCcccccC
Q 041851           67 LHTLTYLNLTDCGITRL---PENIGQLSSLEELDLQENNFERIPESITQRS--KLGRLSLRYCERLQSL  130 (151)
Q Consensus        67 ~~~L~~l~l~~~~l~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--~L~~l~l~~n~~~~~~  130 (151)
                      ++.|+.|++++|.++++   +..+..+++|+.|+|++|.++.+. .+..+.  +|+.|++++|+....+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~  236 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTF  236 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGC
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCcccc
Confidence            45566666666666542   233445666666666666665442 223333  5666666666544433

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.34  E-value=9.2e-07  Score=60.61  Aligned_cols=96  Identities=19%  Similarity=0.179  Sum_probs=65.6

Q ss_pred             cccccccceecCh----hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccC--cccCCCCCC
Q 041851           20 LHAIGTAIREVPS----SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLP--ENIGQLSSL   93 (151)
Q Consensus        20 L~l~~~~i~~~~~----~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~--~~~~~l~~L   93 (151)
                      ++++.|....++.    ....+++|+.|++++|+... +. .++  ..+..+++|+.|++++|.++++.  ..+..+ +|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~-l~-~l~--~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L  222 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYR-LD-DMS--SIVQKAPNLKILNLSGNELKSERELDKIKGL-KL  222 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCC-CG-GGT--THHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CC
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCC-Cc-cch--hHHhhCCCCCEEECCCCccCCchhhhhcccC-Cc
Confidence            5556664433322    23468899999999997322 11 233  44557889999999999999752  233334 99


Q ss_pred             CEEeCCCCCCc-cCCc-------chhccCccCEEe
Q 041851           94 EELDLQENNFE-RIPE-------SITQRSKLGRLS  120 (151)
Q Consensus        94 ~~L~l~~n~~~-~~~~-------~~~~~~~L~~l~  120 (151)
                      ++|++++|.+. .+|.       .+..+++|+.||
T Consensus       223 ~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          223 EELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             SEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             ceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            99999999987 4552       356778888887

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.27  E-value=1.5e-07  Score=61.02  Aligned_cols=113  Identities=10%  Similarity=0.072  Sum_probs=78.1

Q ss_pred             hhhhcCCCCCeeecccc-ccCCccccccccccCCCCCCcccEEEcccCCCCc-----cCcccCCCCCCCEEeCCCCCCcc
Q 041851           32 SSFFRLNNIDLLSFQRS-RGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-----LPENIGQLSSLEELDLQENNFER  105 (151)
Q Consensus        32 ~~~~~l~~L~~l~l~~n-~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-----~~~~~~~l~~L~~L~l~~n~~~~  105 (151)
                      ..+...+.|++|++++| .....-...+.  ..+...++|+.|++++|.+++     +.+.+...+.|++|++++|.++.
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~--~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACA--EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHH--HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHH--HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            34556788999999977 52110001122  445567889999999999985     34455667899999999999882


Q ss_pred             -----CCcchhccCccCEEec--cCCccccc----CCC---CCCCcceEcccCCc
Q 041851          106 -----IPESITQRSKLGRLSL--RYCERLQS----LSK---LPCKLHELDAHHCT  146 (151)
Q Consensus       106 -----~~~~~~~~~~L~~l~l--~~n~~~~~----~~~---~~~~l~~l~l~~~~  146 (151)
                           +...+...++|+.|++  +.|..-.+    +..   ..++|++|++++|.
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence                 3445667789999999  77753221    221   13779999998764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.27  E-value=3.1e-07  Score=59.05  Aligned_cols=85  Identities=18%  Similarity=0.182  Sum_probs=55.0

Q ss_pred             CCCeeeccccccCCccccccccccCCCCCCcccEEEcccCC-CCc-cCcccCCC----CCCCEEeCCCCC-Cc-cCCcch
Q 041851           39 NIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCG-ITR-LPENIGQL----SSLEELDLQENN-FE-RIPESI  110 (151)
Q Consensus        39 ~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-l~~-~~~~~~~l----~~L~~L~l~~n~-~~-~~~~~~  110 (151)
                      .|+.++++++.    +.+..-  ..+..+++|+.|++++|. +++ .-..+..+    ++|++|++++|. ++ .--..+
T Consensus        62 ~L~~LDLs~~~----Itd~GL--~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L  135 (176)
T 3e4g_A           62 KIQAIDATDSC----IMSIGF--DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL  135 (176)
T ss_dssp             CEEEEEEESCC----CCGGGG--GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred             eEeEEeCcCCC----ccHHHH--HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence            47777777543    444433  456677788888888875 665 33344443    368888887764 66 223356


Q ss_pred             hccCccCEEeccCCccccc
Q 041851          111 TQRSKLGRLSLRYCERLQS  129 (151)
Q Consensus       111 ~~~~~L~~l~l~~n~~~~~  129 (151)
                      ..+++|+.|++++|+.+++
T Consensus       136 ~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          136 HHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GGCTTCCEEEEESCTTCCC
T ss_pred             hcCCCCCEEECCCCCCCCc
Confidence            6778888888888876554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.26  E-value=2.6e-07  Score=66.09  Aligned_cols=56  Identities=13%  Similarity=0.095  Sum_probs=27.7

Q ss_pred             CCCCCCEEeCCCCCCc-cCCcchh---ccCccCEEeccCCccccc-----CCC---CCCCcceEcccCC
Q 041851           89 QLSSLEELDLQENNFE-RIPESIT---QRSKLGRLSLRYCERLQS-----LSK---LPCKLHELDAHHC  145 (151)
Q Consensus        89 ~l~~L~~L~l~~n~~~-~~~~~~~---~~~~L~~l~l~~n~~~~~-----~~~---~~~~l~~l~l~~~  145 (151)
                      .+++|+.|++.+|.+. ..+..+.   .+++|++|+++.|. +++     ++.   .+++|+.|++++|
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCC
Confidence            3566666666666554 2222222   24566666666553 222     221   1355666666655

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.26  E-value=7.8e-06  Score=59.18  Aligned_cols=37  Identities=19%  Similarity=0.121  Sum_probs=21.3

Q ss_pred             hccCcccccccccccccceecChhhhcCCCCCeeecc
Q 041851           10 ELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQ   46 (151)
Q Consensus        10 ~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~   46 (151)
                      .+..|++|+.+++.+|.++.++.......+|+.+.+.
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp  211 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP  211 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred             HhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence            4556667777777766666555432224555555554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.18  E-value=2e-05  Score=57.00  Aligned_cols=99  Identities=15%  Similarity=0.216  Sum_probs=60.7

Q ss_pred             ccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCCCCC
Q 041851           15 EALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSL   93 (151)
Q Consensus        15 ~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L   93 (151)
                      .+|+.+.+..+ ++.++. .|.. .+|+.+.+..+     +.....  ..|..+.+|+.+++..|.++.++.......+|
T Consensus       135 ~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~~-----l~~I~~--~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L  205 (401)
T 4fdw_A          135 SQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPST-----LEQLKE--DIFYYCYNLKKADLSKTKITKLPASTFVYAGI  205 (401)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTT-CCCCEEECCTT-----CCEECS--STTTTCTTCCEEECTTSCCSEECTTTTTTCCC
T ss_pred             CCccEEEeCCC-ccEECHHhcCC-CCceEEEeCCC-----ccEehH--HHhhCcccCCeeecCCCcceEechhhEeeccc
Confidence            36777777654 555543 4444 35777777632     222223  56777888888888887777766544445777


Q ss_pred             CEEeCCCCCCccCC-cchhccCccCEEeccC
Q 041851           94 EELDLQENNFERIP-ESITQRSKLGRLSLRY  123 (151)
Q Consensus        94 ~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~  123 (151)
                      +.+.+..+ ++.++ .++.++++|+.+++..
T Consensus       206 ~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          206 EEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             SEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred             CEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence            77777644 44333 3556666677776654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.07  E-value=3e-06  Score=60.61  Aligned_cols=110  Identities=17%  Similarity=0.236  Sum_probs=66.0

Q ss_pred             cccccccccccccce-ecChhhh--cCCCCCeeeccccccC---CccccccccccCC--CCCCcccEEEcccCCCCc-cC
Q 041851           14 LEALWSLHAIGTAIR-EVPSSFF--RLNNIDLLSFQRSRGH---KQMSLSLPITLSL--DGLHTLTYLNLTDCGITR-LP   84 (151)
Q Consensus        14 l~~L~~L~l~~~~i~-~~~~~~~--~l~~L~~l~l~~n~~~---~~~~~~~~~~~~~--~~~~~L~~l~l~~~~l~~-~~   84 (151)
                      +++|++|++..+.+. .....+.  .+++|+.|++..+...   ......+.  ..+  ..+++|+.|++.+|.+.+ .+
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~--~~l~~~~~p~Lr~L~L~~~~i~~~~~  269 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR--PLFSKDRFPNLKWLGIVDAEEQNVVV  269 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG--GGSCTTTCTTCCEEEEESCTTHHHHH
T ss_pred             CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH--HHHhcCCCCCcCEEeCCCCCCchHHH
Confidence            344555555444443 1111222  5788888887531100   00000111  122  357899999999999875 32


Q ss_pred             ccc---CCCCCCCEEeCCCCCCcc-----CCcchhccCccCEEeccCCc
Q 041851           85 ENI---GQLSSLEELDLQENNFER-----IPESITQRSKLGRLSLRYCE  125 (151)
Q Consensus        85 ~~~---~~l~~L~~L~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~  125 (151)
                      ..+   ..+++|+.|+++.|.++.     ++..+..+++|+.|+++.|.
T Consensus       270 ~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            222   368999999999998873     23344567899999999885

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.55  E-value=0.0008  Score=48.30  Aligned_cols=106  Identities=13%  Similarity=0.259  Sum_probs=60.3

Q ss_pred             ccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccC-cccCC
Q 041851           11 LGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLP-ENIGQ   89 (151)
Q Consensus        11 ~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~-~~~~~   89 (151)
                      +..+..|+.+.+.++........+..+.+|+.+.+..+     +.....  ..|..+.+|+.+.+.. +++.+. ..+..
T Consensus       261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~-----i~~I~~--~aF~~c~~L~~i~lp~-~v~~I~~~aF~~  332 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR-----ITELPE--SVFAGCISLKSIDIPE-GITQILDDAFAG  332 (394)
T ss_dssp             TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-----CCEECT--TTTTTCTTCCEEECCT-TCCEECTTTTTT
T ss_pred             eeecccccEEecccccceecCcccccccccccccCCCc-----ccccCc--eeecCCCCcCEEEeCC-cccEehHhHhhC
Confidence            34555566665554332222234555666666666522     111112  4566777777777754 355533 35667


Q ss_pred             CCCCCEEeCCCCCCccCC-cchhccCccCEEeccCCc
Q 041851           90 LSSLEELDLQENNFERIP-ESITQRSKLGRLSLRYCE  125 (151)
Q Consensus        90 l~~L~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~  125 (151)
                      +.+|+.+.+..+ ++.+. .++.++.+|+.+++.++.
T Consensus       333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            777887777544 55443 366777778877777653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.41  E-value=0.0006  Score=41.49  Aligned_cols=36  Identities=31%  Similarity=0.371  Sum_probs=24.4

Q ss_pred             cccEEEcccCCCCccCc-ccCCCCCCCEEeCCCCCCc
Q 041851           69 TLTYLNLTDCGITRLPE-NIGQLSSLEELDLQENNFE  104 (151)
Q Consensus        69 ~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~n~~~  104 (151)
                      +++.|+|++|.++.++. .+..+++|+.|+|.+|.+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            56777777777777554 3456677777777777654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.18  E-value=0.0027  Score=45.22  Aligned_cols=61  Identities=18%  Similarity=0.207  Sum_probs=37.2

Q ss_pred             cCCCCCCcccEEEcccCCCCccC-cccCCCCCCCEEeCCCCCCccCC-cchhccCccCEEeccC
Q 041851           62 LSLDGLHTLTYLNLTDCGITRLP-ENIGQLSSLEELDLQENNFERIP-ESITQRSKLGRLSLRY  123 (151)
Q Consensus        62 ~~~~~~~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~  123 (151)
                      ..|..+.+|+.+.+.++.++.++ ..+..+.+|+.+.+..+ ++.+. .++.++.+|+.+.+..
T Consensus       280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            34566677777777666666643 35566677777777544 44333 3566666676666643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.18  E-value=0.0033  Score=44.72  Aligned_cols=108  Identities=14%  Similarity=0.229  Sum_probs=68.1

Q ss_pred             CcccccccccccccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccC-cccCCC
Q 041851           13 NLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLP-ENIGQL   90 (151)
Q Consensus        13 ~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~-~~~~~l   90 (151)
                      .+.+++.+.+..+ +..++ ..+..+..|+.+.+..+-     .....  ..|..+.+++.+.+.. .+..++ ..+..+
T Consensus       215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v-----~~I~~--~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c  285 (379)
T 4h09_A          215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNV-----TSIGS--FLLQNCTALKTLNFYA-KVKTVPYLLCSGC  285 (379)
T ss_dssp             TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTC-----CEECT--TTTTTCTTCCEEEECC-CCSEECTTTTTTC
T ss_pred             cccccceeeeccc-eeEEccccccCCccceEEEcCCCc-----cEeCc--cccceeehhccccccc-cceeccccccccc
Confidence            3444555555432 33332 345566677777665431     11122  4567778888888754 355544 366788


Q ss_pred             CCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccccCC
Q 041851           91 SSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLS  131 (151)
Q Consensus        91 ~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~  131 (151)
                      .+|+.+.+.++.++.++. ++.++.+|+.+.+..+  ++.++
T Consensus       286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~  325 (379)
T 4h09_A          286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQ  325 (379)
T ss_dssp             TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEEC
T ss_pred             cccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEH
Confidence            999999998888886544 7888899999998653  44444

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.11  E-value=0.0047  Score=44.30  Aligned_cols=60  Identities=23%  Similarity=0.301  Sum_probs=32.6

Q ss_pred             CCCCCCcccEEEcccCCCCccC-cccCCCCCCCEEeCCCCCCccCC-cchhccCccCEEeccCC
Q 041851           63 SLDGLHTLTYLNLTDCGITRLP-ENIGQLSSLEELDLQENNFERIP-ESITQRSKLGRLSLRYC  124 (151)
Q Consensus        63 ~~~~~~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n  124 (151)
                      .+..+.+|+.+.+..+ ++.+. ..+..+.+|+.+++..+ ++.+. .++.++.+|+.+++..+
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            3445556666665432 44432 34556666676666543 44332 35566666666666543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.96  E-value=0.00021  Score=46.65  Aligned_cols=14  Identities=29%  Similarity=0.273  Sum_probs=7.0

Q ss_pred             CcccEEEcccCCCC
Q 041851           68 HTLTYLNLTDCGIT   81 (151)
Q Consensus        68 ~~L~~l~l~~~~l~   81 (151)
                      ++|+.|+++.|.++
T Consensus        98 ~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           98 PSLRVLNVESNFLT  111 (197)
T ss_dssp             SSCCEEECCSSBCC
T ss_pred             CccCeEecCCCcCC
Confidence            34555555555554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.62  E-value=0.0038  Score=44.79  Aligned_cols=102  Identities=13%  Similarity=0.192  Sum_probs=70.1

Q ss_pred             ccCcccccccccccccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccC-cccC
Q 041851           11 LGNLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLP-ENIG   88 (151)
Q Consensus        11 ~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~-~~~~   88 (151)
                      +..+..++.+......   ++ ..+..+.+|+.+.+..+     +.....  ..|..+.+|+.+.+.. .++.+. ..+.
T Consensus       272 F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-----i~~I~~--~aF~~c~~L~~i~lp~-~v~~I~~~aF~  340 (394)
T 4fs7_A          272 FYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-----VKFIGE--EAFESCTSLVSIDLPY-LVEEIGKRSFR  340 (394)
T ss_dssp             TTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-----CCEECT--TTTTTCTTCCEECCCT-TCCEECTTTTT
T ss_pred             cccccccceeccCcee---eccccccccccccccccccc-----cceech--hhhcCCCCCCEEEeCC-cccEEhHHhcc
Confidence            3445555555554432   22 25667888998888743     122223  5788899999999864 477754 4777


Q ss_pred             CCCCCCEEeCCCCCCccC-CcchhccCccCEEeccCC
Q 041851           89 QLSSLEELDLQENNFERI-PESITQRSKLGRLSLRYC  124 (151)
Q Consensus        89 ~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n  124 (151)
                      .+.+|+.+.+..+ ++.+ ..++.++.+|+.+++..+
T Consensus       341 ~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          341 GCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             CCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            8999999999876 6644 447889999999998764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.28  E-value=0.0011  Score=43.30  Aligned_cols=103  Identities=15%  Similarity=0.126  Sum_probs=66.9

Q ss_pred             cCCCCCeeecccc-ccCCccccc----cccccCCCCCCcccEEEcccCCCCc-----cCcccCCCCCCCEEeCCCCCCc-
Q 041851           36 RLNNIDLLSFQRS-RGHKQMSLS----LPITLSLDGLHTLTYLNLTDCGITR-----LPENIGQLSSLEELDLQENNFE-  104 (151)
Q Consensus        36 ~l~~L~~l~l~~n-~~~~~~~~~----~~~~~~~~~~~~L~~l~l~~~~l~~-----~~~~~~~l~~L~~L~l~~n~~~-  104 (151)
                      .-..|+.|++.++ .    +.+.    +.  +.+..-.+|+.|++++|.+++     +.+.+..=+.|+.|+|+.|.++ 
T Consensus        39 ~n~~L~~L~L~~nn~----igd~ga~~la--~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           39 DDTDLKEVNINNMKR----VSKERIRSLI--EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             TCSSCCEEECTTCCS----SCHHHHHHHH--HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             cCCCccEEECCCCCC----CCHHHHHHHH--HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            3467889999864 3    3221    22  445566789999999999986     3334555678999999999987 


Q ss_pred             c----CCcchhccCccCEEeccCCcc--ccc-----CCC---CCCCcceEcccC
Q 041851          105 R----IPESITQRSKLGRLSLRYCER--LQS-----LSK---LPCKLHELDAHH  144 (151)
Q Consensus       105 ~----~~~~~~~~~~L~~l~l~~n~~--~~~-----~~~---~~~~l~~l~l~~  144 (151)
                      .    +-.++..-+.|+.|++++|..  ++.     +..   .-+.|..|+++.
T Consensus       113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~  166 (197)
T 1pgv_A          113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  166 (197)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence            2    222444556799999986521  221     111   126677777764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.23  E-value=0.0042  Score=37.68  Aligned_cols=55  Identities=16%  Similarity=0.173  Sum_probs=26.7

Q ss_pred             ccccccccce--ecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851           19 SLHAIGTAIR--EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus        19 ~L~l~~~~i~--~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      .++-+++.++  .+|..+  -.+++.|++++|.    +....+  ..|..+++|+.+++++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~----l~~l~~--~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNN----LTALPP--GLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSC----CSSCCT--TTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCc----CCccCh--hhhhhccccCEEEecCCCee
Confidence            3444455554  444321  1245666666554    222222  34445556666666666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.15  E-value=0.013  Score=41.98  Aligned_cols=103  Identities=17%  Similarity=0.278  Sum_probs=68.1

Q ss_pred             ccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccC-cccC
Q 041851           11 LGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLP-ENIG   88 (151)
Q Consensus        11 ~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~-~~~~   88 (151)
                      +..+.+|+.+.+.. .++.++. .|..+.+|+.+.+..+     +.....  ..|..+.+|+.+.+.. .++.+. ..+.
T Consensus       284 F~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-----v~~I~~--~aF~~C~~L~~i~ip~-sv~~I~~~aF~  354 (394)
T 4gt6_A          284 FMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-----ITQILD--DAFAGCEQLERIAIPS-SVTKIPESAFS  354 (394)
T ss_dssp             TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-----CCEECT--TTTTTCTTCCEEEECT-TCCBCCGGGGT
T ss_pred             cccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-----ccEehH--hHhhCCCCCCEEEECc-ccCEEhHhHhh
Confidence            45778888888864 5666654 6888899999999754     222223  6788999999999964 477754 4788


Q ss_pred             CCCCCCEEeCCCCCCccCCcchhccCccCEEeccCC
Q 041851           89 QLSSLEELDLQENNFERIPESITQRSKLGRLSLRYC  124 (151)
Q Consensus        89 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n  124 (151)
                      .+.+|+.+++.++... . ..+....+|+.+.+..+
T Consensus       355 ~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          355 NCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             TCTTCCEEEESSCHHH-H-HTCBCCCCC--------
T ss_pred             CCCCCCEEEECCceee-h-hhhhccCCCCEEEeCCC
Confidence            8999999999887432 1 23455667777776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	151
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 3e-07
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 67  LHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCER 126
             +L  LN+++  +  LP        LE L    N+   +PE       L +L + Y   
Sbjct: 283 PPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPELP---QNLKQLHVEYN-P 335

Query: 127 LQSLSKLPCKLHEL 140
           L+    +P  + +L
Sbjct: 336 LREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 2e-05
 Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 4/76 (5%)

Query: 70  LTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQS 129
              L L + G++ LPE       LE L    N+   +PE      K   +     + L  
Sbjct: 40  AHELELNNLGLSSLPELPPH---LESLVASCNSLTELPELPQS-LKSLLVDNNNLKALSD 95

Query: 130 LSKLPCKLHELDAHHC 145
           L  L   L   +    
Sbjct: 96  LPPLLEYLGVSNNQLE 111

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 8e-05
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 89  QLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAHHC 145
              SLEEL++  N    +P       +L RL   +   L  + +LP  L +L   + 
Sbjct: 282 LPPSLEELNVSNNKLIELPALP---PRLERLIASFN-HLAEVPELPQNLKQLHVEYN 334

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.7 bits (83), Expect = 5e-04
 Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 65  DGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKL 116
                L  L  +   +  +PE      +L++L ++ N     P+       L
Sbjct: 301 ALPPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL 349

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 2e-05
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 61  TLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIP 107
           T+S   L  +T L     GI  + + +  L++L +++   N    I 
Sbjct: 37  TVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDIT 82

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 7e-05
 Identities = 27/152 (17%), Positives = 48/152 (31%), Gaps = 18/152 (11%)

Query: 8   PDELGNLEALWSLHAIGTAIREVP--SSFFRLNNIDL-----------LSFQRSRGHKQM 54
              L +L  L  L      I  +   S   +L  + L                    +  
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN 293

Query: 55  SLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRS 114
              L     +  L  LTYL L    I+ +   +  L+ L+ L    N    +  S+   +
Sbjct: 294 ENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLT 351

Query: 115 KLGRLSLRYC--ERLQSLSKLPCKLHELDAHH 144
            +  LS  +     L  L+ L  ++ +L  + 
Sbjct: 352 NINWLSAGHNQISDLTPLANLT-RITQLGLND 382

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.4 bits (85), Expect = 3e-04
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 1/66 (1%)

Query: 71  TYLNLTDCGIT-RLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQS 129
             L+L +  I   LP+ + QL  L  L++  NN            +    +    + L  
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306

Query: 130 LSKLPC 135
                C
Sbjct: 307 SPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 36.7 bits (83), Expect = 6e-04
 Identities = 8/49 (16%), Positives = 14/49 (28%)

Query: 55  SLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNF 103
            +   +   L  L  L  LN++   +       G L   +      N  
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.2 bits (84), Expect = 4e-04
 Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 6/90 (6%)

Query: 62  LSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNF-----ERIPESITQRSKL 116
            S++G   L    +T      +   + +  S++E+ L  N         + E+I  +  L
Sbjct: 3   FSIEGKS-LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 61

Query: 117 GRLSLRYCERLQSLSKLPCKLHELDAHHCT 146
                      +   ++P  L  L      
Sbjct: 62  EIAEFSDIFTGRVKDEIPEALRLLLQALLK 91

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 7e-04
 Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 3/84 (3%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIP-ESITQRSKLGRLSL 121
            +  + +   +N     +T LP ++        L L EN        ++   ++L +L+L
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 122 RYCERLQSLSKLPCKLHELDAHHC 145
              E  +        +        
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSH 86

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (78), Expect = 0.002
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 63  SLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNF 103
            L+GL  L  L L +  +  +P+       L    L  N +
Sbjct: 167 LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (77), Expect = 0.003
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 64  LDGLHTLTYLNLTDCGIT-----RLPENIGQLSSLEELDLQENNF-ERIPESITQRSKLG 117
           L  L     + L DCG+T      +   +    +L EL+L+ N   +     + Q  +  
Sbjct: 23  LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82

Query: 118 RLSLRY 123
              ++ 
Sbjct: 83  SCKIQK 88

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (77), Expect = 0.003
 Identities = 11/87 (12%), Positives = 19/87 (21%), Gaps = 4/87 (4%)

Query: 62  LSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSL 121
                      L+L    I  +      L   + +D  +N   ++         L RL  
Sbjct: 12  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD----GFPLLRRLKT 67

Query: 122 RYCERLQSLSKLPCKLHELDAHHCTAL 148
                 +           L       L
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELIL 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	151
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.62
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.6
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.6
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.59
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.55
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.55
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.51
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.5
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.47
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.47
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.47
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.46
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.46
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.43
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.42
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.37
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.36
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.31
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.25
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.15
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.15
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.1
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.02
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.96
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.95
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.95
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.89
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.42
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.36
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.3
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.23
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.2
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.89
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.7
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.23
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.2
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.94

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=2.2e-15  Score=97.30  Aligned_cols=116  Identities=19%  Similarity=0.232  Sum_probs=97.5

Q ss_pred             cCCCCChhccCcccccccccccccce-ecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIR-EVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI   80 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~-~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l   80 (151)
                      ++..+|..+.  .++++|++++|.++ .++ ..|..+++|+.|++.+|.    +....+  ..+..+++|+.|++++|.+
T Consensus        19 ~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~----i~~~~~--~~~~~~~~L~~L~Ls~N~l   90 (192)
T d1w8aa_          19 GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ----LTGIEP--NAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC----CCCBCT--TTTTTCTTCCEEECCSCCC
T ss_pred             CcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccc----cccccc--cccccccccceeeeccccc
Confidence            5778887663  68999999999997 343 467889999999999887    444455  7788899999999999999


Q ss_pred             CccCc-ccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcc
Q 041851           81 TRLPE-NIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCER  126 (151)
Q Consensus        81 ~~~~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~  126 (151)
                      +.+++ .+..+++|++|+|++|.++.++. ++..+++|+++++++|+.
T Consensus        91 ~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence            99654 67889999999999999997655 678899999999999874

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=9.4e-15  Score=88.01  Aligned_cols=100  Identities=21%  Similarity=0.289  Sum_probs=80.8

Q ss_pred             cccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCCCCCCEEe
Q 041851           18 WSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELD   97 (151)
Q Consensus        18 ~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~   97 (151)
                      +.|++++|.++.++. +..+.+|+++++++|+    +. ..|  +.++.+++|+.+++++|.+++++ .+..+++|++++
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~----l~-~lp--~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~   71 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR----LR-ALP--PALAALRCLEVLQASDNALENVD-GVANLPRLQELL   71 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSC----CC-CCC--GGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEE
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCc----cC-cch--hhhhhhhcccccccccccccccC-ccccccccCeEE
Confidence            468889999887764 7888899999999886    33 345  56778889999999999998875 588899999999


Q ss_pred             CCCCCCccCCc--chhccCccCEEeccCCcc
Q 041851           98 LQENNFERIPE--SITQRSKLGRLSLRYCER  126 (151)
Q Consensus        98 l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~  126 (151)
                      +++|.++.++.  .+..+++|+.+++++|+.
T Consensus        72 l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          72 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             CCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CCCCccCCCCCchhhcCCCCCCEEECCCCcC
Confidence            99999886653  577888999999999863

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.8e-15  Score=94.35  Aligned_cols=124  Identities=19%  Similarity=0.179  Sum_probs=100.8

Q ss_pred             ccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcc-cCC
Q 041851           11 LGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPEN-IGQ   89 (151)
Q Consensus        11 ~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~   89 (151)
                      +.++.++++|++++|.|+.++..+..+++|+++++++|.    +.. +   +.+..+++|+.+++++|.++++++. +..
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~----i~~-l---~~~~~l~~L~~L~ls~N~i~~l~~~~~~~   85 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE----IRK-L---DGFPLLRRLKTLLVNNNRICRIGEGLDQA   85 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC----CCE-E---CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCC----CCc-c---CCcccCcchhhhhcccccccCCCcccccc
Confidence            457778999999999999888766789999999999886    332 2   3477889999999999999997665 457


Q ss_pred             CCCCCEEeCCCCCCccCCc--chhccCccCEEeccCCcccccCCC-------CCCCcceEccc
Q 041851           90 LSSLEELDLQENNFERIPE--SITQRSKLGRLSLRYCERLQSLSK-------LPCKLHELDAH  143 (151)
Q Consensus        90 l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~-------~~~~l~~l~l~  143 (151)
                      +++++.|++++|.++.++.  .+..+++|+.+++++|+ +...|.       .+++|+.|+-.
T Consensus        86 l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          86 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             ccccccceeccccccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCCC
Confidence            9999999999999987664  67889999999999996 455553       24778887754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1e-14  Score=98.46  Aligned_cols=139  Identities=20%  Similarity=0.152  Sum_probs=93.4

Q ss_pred             cCCCCC-hhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCcc-------------------cccccccc
Q 041851            3 HLQRLP-DELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQM-------------------SLSLPITL   62 (151)
Q Consensus         3 ~l~~lp-~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~-------------------~~~~~~~~   62 (151)
                      +|..+| ..+.++++|++|++++|.++.++. +..+++|+.+++++|+.....                   ....+  .
T Consensus        42 ~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~  118 (266)
T d1p9ag_          42 LLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL--G  118 (266)
T ss_dssp             CCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCS--S
T ss_pred             cCCCcCHHHhhcccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccceeec--c
Confidence            466666 457788888888888888886653 456788888888877532210                   00111  2


Q ss_pred             CCCCCCcccEEEcccCCCCccCc-ccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccccCCCC---CCCc
Q 041851           63 SLDGLHTLTYLNLTDCGITRLPE-NIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLSKL---PCKL  137 (151)
Q Consensus        63 ~~~~~~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~---~~~l  137 (151)
                      .+..+.++..+++.+|.++.++. .+..+++++.+++++|.++.++. .+..+++|+.|++++|. ++.+|..   ..+|
T Consensus       119 ~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L  197 (266)
T d1p9ag_         119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLL  197 (266)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCC
T ss_pred             ccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCC-CcccChhHCCCCCC
Confidence            34455666677777777666543 44567888888888888885554 56777888888888875 6677753   2677


Q ss_pred             ceEcccCC
Q 041851          138 HELDAHHC  145 (151)
Q Consensus       138 ~~l~l~~~  145 (151)
                      +.|+++++
T Consensus       198 ~~L~L~~N  205 (266)
T d1p9ag_         198 PFAFLHGN  205 (266)
T ss_dssp             SEEECCSC
T ss_pred             CEEEecCC
Confidence            88888754

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.59  E-value=3.2e-15  Score=103.02  Aligned_cols=85  Identities=15%  Similarity=0.187  Sum_probs=65.5

Q ss_pred             CCCCCcccEEEcccCCCCccCcccCCCCCCCEEeCCCCCCc-cCCcchhccCccCEEeccCCcccccCCCC--CCCcceE
Q 041851           64 LDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSLRYCERLQSLSKL--PCKLHEL  140 (151)
Q Consensus        64 ~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~--~~~l~~l  140 (151)
                      +..+++++.+++.++.+.+.++.++.+++++.|++++|.++ .+|..++.+++|++|++++|...+.+|..  +.+|+.+
T Consensus       217 ~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l  296 (313)
T d1ogqa_         217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS  296 (313)
T ss_dssp             CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGG
T ss_pred             ccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHH
Confidence            34555667777777776664456777889999999999998 89999999999999999998766678864  3677777


Q ss_pred             cccCCccc
Q 041851          141 DAHHCTAL  148 (151)
Q Consensus       141 ~l~~~~~l  148 (151)
                      ++++++.|
T Consensus       297 ~l~~N~~l  304 (313)
T d1ogqa_         297 AYANNKCL  304 (313)
T ss_dssp             GTCSSSEE
T ss_pred             HhCCCccc
Confidence            88777654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=2.2e-14  Score=86.35  Aligned_cols=109  Identities=17%  Similarity=0.174  Sum_probs=88.0

Q ss_pred             ccCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            2 FHLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         2 ~~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      .++..++ .++.+++|++|++++|.++.+|+.+..+++|+.+++++|.    +.. .+   .+..+++|+.+++++|.++
T Consensus         8 n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~----i~~-l~---~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           8 KDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA----LEN-VD---GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC----CCC-CG---GGTTCSSCCEEECCSSCCC
T ss_pred             CCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhccccccccccc----ccc-cC---ccccccccCeEECCCCccC
Confidence            3567776 4789999999999999999999889999999999999887    332 23   4778999999999999999


Q ss_pred             ccC--cccCCCCCCCEEeCCCCCCccCCc----chhccCccCEE
Q 041851           82 RLP--ENIGQLSSLEELDLQENNFERIPE----SITQRSKLGRL  119 (151)
Q Consensus        82 ~~~--~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~~~L~~l  119 (151)
                      +++  ..+..+++|+.+++++|.++..+.    ....+++++.+
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            865  467889999999999999874432    23445676654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=7.2e-14  Score=90.51  Aligned_cols=130  Identities=18%  Similarity=0.271  Sum_probs=89.9

Q ss_pred             CCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCcc
Q 041851            4 LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRL   83 (151)
Q Consensus         4 l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~   83 (151)
                      |..++ .++.+++|++|++++|.++.+++ +..+++|+++++..|....     .   +.+..++.|+.++++++.....
T Consensus        52 i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~-----~---~~l~~l~~L~~L~l~~~~~~~~  121 (199)
T d2omxa2          52 IKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD-----I---TPLANLTNLTGLTLFNNQITDI  121 (199)
T ss_dssp             CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-----C---GGGTTCTTCSEEECCSSCCCCC
T ss_pred             CCCcc-ccccCCCcCcCccccccccCccc-ccCCccccccccccccccc-----c---cccccccccccccccccccccc
Confidence            34443 46778888888888888876654 7778888888888665211     1   2356677788888877776654


Q ss_pred             CcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC--CCCCcceEcccCCc
Q 041851           84 PENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK--LPCKLHELDAHHCT  146 (151)
Q Consensus        84 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~--~~~~l~~l~l~~~~  146 (151)
                      + .+..+++|+.+++++|.+..++ .+..+++++.+++.+|. +..++.  .+++|++|++++|+
T Consensus       122 ~-~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~-l~~l~~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         122 D-PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQ-VTDLKPLANLTTLERLDISSNK  183 (199)
T ss_dssp             G-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSC
T ss_pred             c-ccchhhhhHHhhhhhhhhcccc-ccccccccccccccccc-ccCCccccCCCCCCEEECCCCC
Confidence            3 4667788888888888776554 46677788888888774 455543  34778888887763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=7.1e-14  Score=91.28  Aligned_cols=109  Identities=25%  Similarity=0.369  Sum_probs=60.9

Q ss_pred             CCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCcc
Q 041851            4 LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRL   83 (151)
Q Consensus         4 l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~   83 (151)
                      +..++ .++.+++|++|++++|.++.+++ +..+++|+.+++++|+...     .   +.+..+++|+.+++.+|.+..+
T Consensus        58 i~~l~-~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~-----l---~~l~~l~~L~~L~l~~~~~~~~  127 (210)
T d1h6ta2          58 IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-----L---SSLKDLKKLKSLSLEHNGISDI  127 (210)
T ss_dssp             CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-----G---GGGTTCTTCCEEECTTSCCCCC
T ss_pred             CCCch-hHhhCCCCCEEeCCCccccCccc-cccCccccccccccccccc-----c---cccccccccccccccccccccc
Confidence            44444 46778888888888888887653 5678888888888775221     1   1244556666666666655443


Q ss_pred             CcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCC
Q 041851           84 PENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYC  124 (151)
Q Consensus        84 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n  124 (151)
                      + .+..+++++.+++++|.++..+ .+..+++|+.+++++|
T Consensus       128 ~-~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n  166 (210)
T d1h6ta2         128 N-GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDN  166 (210)
T ss_dssp             G-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS
T ss_pred             c-cccccccccccccccccccccc-cccccccccccccccc
Confidence            2 2334444444444444443221 2333444444444444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=9e-14  Score=93.79  Aligned_cols=120  Identities=24%  Similarity=0.226  Sum_probs=88.9

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCc--------------------ccccccccc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQ--------------------MSLSLPITL   62 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~--------------------~~~~~~~~~   62 (151)
                      +|+.+|. +..+++|++|++++|.++..+..+..+++|+.+++..+.....                    +....+  .
T Consensus        66 ~l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~--~  142 (266)
T d1p9ag_          66 ELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP--G  142 (266)
T ss_dssp             CCCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT--T
T ss_pred             ccccccc-ccccccccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceecc--c
Confidence            3444543 3567777777777777766555566666777776666543221                    111122  4


Q ss_pred             CCCCCCcccEEEcccCCCCccC-cccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCc
Q 041851           63 SLDGLHTLTYLNLTDCGITRLP-ENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCE  125 (151)
Q Consensus        63 ~~~~~~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~  125 (151)
                      .+..++.++.+++++|.+++++ ..+..+++|++|+|++|.++.+|..+..+++|+.+++++|+
T Consensus       143 ~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             cccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCC
Confidence            5667889999999999999965 46788999999999999999999988899999999999987

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=9.1e-15  Score=91.99  Aligned_cols=114  Identities=18%  Similarity=0.198  Sum_probs=93.3

Q ss_pred             ccCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            2 FHLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         2 ~~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      .+|..+|..+..+++|++|++++|.++.++ .+..+++|+.+++++|.    +....+  ..+..+++++.+++++|.++
T Consensus        28 n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~----i~~l~~--~~~~~l~~L~~L~L~~N~i~  100 (162)
T d1a9na_          28 YKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNR----ICRIGE--GLDQALPDLTELILTNNSLV  100 (162)
T ss_dssp             SCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSC----CCEECS--CHHHHCTTCCEEECCSCCCC
T ss_pred             CCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhccccc----ccCCCc--cccccccccccceecccccc
Confidence            367788877778999999999999999875 47889999999999887    333223  33456889999999999999


Q ss_pred             ccC--cccCCCCCCCEEeCCCCCCccCCc----chhccCccCEEecc
Q 041851           82 RLP--ENIGQLSSLEELDLQENNFERIPE----SITQRSKLGRLSLR  122 (151)
Q Consensus        82 ~~~--~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~~~L~~l~l~  122 (151)
                      +++  ..+..+++|+++++++|.++..+.    .+..+++|++||-.
T Consensus       101 ~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_         101 ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             ccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            865  367889999999999999987764    47788999999844

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.2e-13  Score=93.88  Aligned_cols=135  Identities=23%  Similarity=0.253  Sum_probs=103.5

Q ss_pred             CCCC-ChhccCcccccccccccccceecC-hhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            4 LQRL-PDELGNLEALWSLHAIGTAIREVP-SSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         4 l~~l-p~~~~~l~~L~~L~l~~~~i~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      +..+ |..+..+++|++|++++|.+..++ ..+....+|+.+++..|.    +....+  ..+..+++++.+++++|.++
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~----l~~i~~--~~f~~~~~L~~L~l~~N~l~  166 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA----LQALPD--DTFRDLGNLTHLFLHGNRIS  166 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC----CCCCCT--TTTTTCTTCCEEECCSSCCC
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccc----ccccCh--hHhccccchhhcccccCccc
Confidence            4444 456788899999999999887554 356678889999999876    333334  56778888999999999998


Q ss_pred             ccC-cccCCCCCCCEEeCCCCCCc-cCCcchhccCccCEEeccCCcccccCCC----CCCCcceEcccCC
Q 041851           82 RLP-ENIGQLSSLEELDLQENNFE-RIPESITQRSKLGRLSLRYCERLQSLSK----LPCKLHELDAHHC  145 (151)
Q Consensus        82 ~~~-~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~----~~~~l~~l~l~~~  145 (151)
                      .++ ..+..+++|+.+++++|.++ ..|..+..+++++.+++++|.. ..++.    ...+|++|++.++
T Consensus       167 ~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL-SALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SCCCHHHHTTCTTCCEEECCSS
T ss_pred             ccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccc-ccccccccccccccCEEEecCC
Confidence            854 56778899999999999888 4567888889999999999864 44442    3477889988864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.47  E-value=4.3e-13  Score=86.79  Aligned_cols=116  Identities=21%  Similarity=0.324  Sum_probs=95.2

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      ++..++. +..+++|++|++++|.+..++. +..++.|+.+++.++..    ..  .  +.+..+++|+.+++++|.+..
T Consensus        73 ~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~~~~~----~~--~--~~~~~l~~L~~L~l~~n~l~~  142 (199)
T d2omxa2          73 QLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQI----TD--I--DPLKNLTNLNRLELSSNTISD  142 (199)
T ss_dssp             CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC----CC--C--GGGTTCTTCSEEECCSSCCCC
T ss_pred             cccCccc-ccCCcccccccccccccccccc-ccccccccccccccccc----cc--c--cccchhhhhHHhhhhhhhhcc
Confidence            4566664 7899999999999999887764 78899999999996652    21  1  346678999999999999887


Q ss_pred             cCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCC
Q 041851           83 LPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLS  131 (151)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  131 (151)
                      ++ .+..+++++.|++.+|.++.++ .+.++++|++|++++|+ +++++
T Consensus       143 ~~-~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~-i~~i~  188 (199)
T d2omxa2         143 IS-ALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNK-VSDIS  188 (199)
T ss_dssp             CG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCCG
T ss_pred             cc-cccccccccccccccccccCCc-cccCCCCCCEEECCCCC-CCCCc
Confidence            65 5888999999999999998776 47889999999999985 66665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.47  E-value=6.5e-14  Score=96.38  Aligned_cols=113  Identities=25%  Similarity=0.385  Sum_probs=59.7

Q ss_pred             CChhccCccccccccccc-ccce-ecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-c
Q 041851            7 LPDELGNLEALWSLHAIG-TAIR-EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-L   83 (151)
Q Consensus         7 lp~~~~~l~~L~~L~l~~-~~i~-~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~   83 (151)
                      +|..++++++|++|++++ |.++ .+|..+..+++|++|++++|+    +.+..+  ..+..+..|+.++++.|.+.. +
T Consensus        68 lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~----l~~~~~--~~~~~~~~L~~l~l~~N~~~~~~  141 (313)
T d1ogqa_          68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN----VSGAIP--DFLSQIKTLVTLDFSYNALSGTL  141 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC----CEEECC--GGGGGCTTCCEEECCSSEEESCC
T ss_pred             CChHHhcCccccccccccccccccccccccccccccchhhhcccc----cccccc--ccccchhhhcccccccccccccC
Confidence            555666666666666654 4454 556556666666666666554    222223  334444555555555555443 4


Q ss_pred             CcccCCCCCCCEEeCCCCCCc-cCCcchhccCcc-CEEeccCCc
Q 041851           84 PENIGQLSSLEELDLQENNFE-RIPESITQRSKL-GRLSLRYCE  125 (151)
Q Consensus        84 ~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L-~~l~l~~n~  125 (151)
                      |..+..++.++.+++++|.++ .+|..+..+..+ +.++++.|.
T Consensus       142 p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~  185 (313)
T d1ogqa_         142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             chhhccCcccceeecccccccccccccccccccccccccccccc
Confidence            555555555555555555555 455544444443 445554443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.47  E-value=5.7e-13  Score=86.90  Aligned_cols=127  Identities=24%  Similarity=0.293  Sum_probs=74.6

Q ss_pred             CCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCcc
Q 041851            4 LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRL   83 (151)
Q Consensus         4 l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~   83 (151)
                      |..++ .++.+++|++|++++|.++.++ .+..+++|+.+++.+|....      .  +.+..++.++.+++++|.+++.
T Consensus        80 i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~~~~~------~--~~l~~l~~l~~l~~~~n~l~~~  149 (210)
T d1h6ta2          80 LTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGISD------I--NGLVHLPQLESLYLGNNKITDI  149 (210)
T ss_dssp             CCCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCCCC------C--GGGGGCTTCCEEECCSSCCCCC
T ss_pred             ccCcc-ccccCccccccccccccccccc-cccccccccccccccccccc------c--cccccccccccccccccccccc
Confidence            44444 3456667777777777666654 35666667777766554111      1  2344556666777776666653


Q ss_pred             CcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCC--CCCcceEccc
Q 041851           84 PENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKL--PCKLHELDAH  143 (151)
Q Consensus        84 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~--~~~l~~l~l~  143 (151)
                      + .+..+++|+.+++++|.++.++. +..+++|+.|++++|. ++.++.+  +++|+.|+++
T Consensus       150 ~-~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         150 T-VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELF  208 (210)
T ss_dssp             G-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEE
T ss_pred             c-ccccccccccccccccccccccc-ccCCCCCCEEECCCCC-CCCChhhcCCCCCCEEEcc
Confidence            2 34556667777777776665543 5566677777777663 4555532  2556666654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.46  E-value=3.9e-17  Score=106.19  Aligned_cols=117  Identities=21%  Similarity=0.205  Sum_probs=94.7

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR   82 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~   82 (151)
                      .++.+|..+..+++|++|++++|.++.++ .+..+++|+.|++++|..    . .++  .....+++|+.+++++|.+++
T Consensus        36 ~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i----~-~i~--~~~~~~~~L~~L~l~~N~i~~  107 (198)
T d1m9la_          36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLI----K-KIE--NLDAVADTLEELWISYNQIAS  107 (198)
T ss_dssp             TCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEE----C-SCS--SHHHHHHHCCEEECSEEECCC
T ss_pred             chhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccc----c-ccc--ccccccccccccccccccccc
Confidence            46677788999999999999999999876 488899999999998862    2 222  223345679999999999998


Q ss_pred             cCcccCCCCCCCEEeCCCCCCccCCc--chhccCccCEEeccCCcccc
Q 041851           83 LPENIGQLSSLEELDLQENNFERIPE--SITQRSKLGRLSLRYCERLQ  128 (151)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~  128 (151)
                      ++ .+..+++|+.|++++|.++.++.  .+..+++|+.|++++|+...
T Consensus       108 l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         108 LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cc-cccccccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            64 47788999999999999987654  57888999999999997543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.46  E-value=4.6e-13  Score=91.68  Aligned_cols=130  Identities=15%  Similarity=0.272  Sum_probs=98.4

Q ss_pred             ChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCcc-Ccc
Q 041851            8 PDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRL-PEN   86 (151)
Q Consensus         8 p~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~   86 (151)
                      +..+..+++++.++++++.+..++..+  +++++.+++.+|.    .....+  ..+..++.++.+++++|.+.++ +..
T Consensus       143 ~~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~----~~~~~~--~~~~~~~~l~~L~~s~n~l~~~~~~~  214 (305)
T d1xkua_         143 NGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNK----ITKVDA--ASLKGLNNLAKLGLSFNSISAVDNGS  214 (305)
T ss_dssp             TTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSC----CCEECT--GGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred             ccccccccccCccccccCCccccCccc--CCccCEEECCCCc----CCCCCh--hHhhcccccccccccccccccccccc
Confidence            345566778888888888887776533  6778888888765    333344  5677888899999999998884 456


Q ss_pred             cCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC----------CCCCcceEcccCCc
Q 041851           87 IGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK----------LPCKLHELDAHHCT  146 (151)
Q Consensus        87 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~----------~~~~l~~l~l~~~~  146 (151)
                      +..+++|++|++++|.++.+|.++..+++|++|++++|+ ++.++.          ...+++.|++.+++
T Consensus       215 ~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~-i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         215 LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             GGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ccccccceeeecccccccccccccccccCCCEEECCCCc-cCccChhhccCcchhcccCCCCEEECCCCc
Confidence            778889999999999998888888888999999999885 555542          23667888887765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.43  E-value=1.1e-12  Score=86.31  Aligned_cols=134  Identities=19%  Similarity=0.290  Sum_probs=67.9

Q ss_pred             cCCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCcccc--------------------------
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSL--------------------------   56 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~--------------------------   56 (151)
                      +|..++ .++++++|++|++++|.++.+.+ +..+++++.+++..|.... +..                          
T Consensus        52 ~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~-i~~l~~l~~L~~l~l~~~~~~~~~~~~~~  128 (227)
T d1h6ua2          52 GVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VSAIAGLQSIKTLDLTSTQITDVTPLAGL  128 (227)
T ss_dssp             CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CGGGTTCTTCCEEECTTSCCCCCGGGTTC
T ss_pred             CCCcch-hHhcCCCCcEeecCCceeecccc-ccccccccccccccccccc-cccccccccccccccccccccccchhccc
Confidence            455553 46777777777777777765532 5556666666666543211 000                          


Q ss_pred             -----------ccccccCCCCCCcccEEEcccCCCCccCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCc
Q 041851           57 -----------SLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCE  125 (151)
Q Consensus        57 -----------~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~  125 (151)
                                 .......+..+++++.+++++|.+.+.+ .+..+++|+.|++++|.++.++. +..+++|++|++++|+
T Consensus       129 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQ  206 (227)
T ss_dssp             TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSC
T ss_pred             cchhhhhchhhhhchhhhhccccccccccccccccccch-hhcccccceecccCCCccCCChh-hcCCCCCCEEECcCCc
Confidence                       0000011223444555555555554432 24555566666666665554432 4555566666666553


Q ss_pred             ccccCCC--CCCCcceEcc
Q 041851          126 RLQSLSK--LPCKLHELDA  142 (151)
Q Consensus       126 ~~~~~~~--~~~~l~~l~l  142 (151)
                       ++.++.  .+++|+.|++
T Consensus       207 -lt~i~~l~~l~~L~~L~l  224 (227)
T d1h6ua2         207 -ISDVSPLANTSNLFIVTL  224 (227)
T ss_dssp             -CCBCGGGTTCTTCCEEEE
T ss_pred             -CCCCcccccCCCCCEEEe
Confidence             444442  2344555544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.42  E-value=1.7e-13  Score=88.21  Aligned_cols=129  Identities=22%  Similarity=0.181  Sum_probs=94.2

Q ss_pred             hhccCcccccccccccccceec-ChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCc-c
Q 041851            9 DELGNLEALWSLHAIGTAIREV-PSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPE-N   86 (151)
Q Consensus         9 ~~~~~l~~L~~L~l~~~~i~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~   86 (151)
                      ..+..+++|++|++++|.+..+ +..+..+++|+.+++++|+    +....+  +.|..+++|+.|++++|.++.+++ .
T Consensus        48 ~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~----l~~l~~--~~F~~l~~L~~L~L~~N~l~~i~~~~  121 (192)
T d1w8aa_          48 GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK----IKEISN--KMFLGLHQLKTLNLYDNQISCVMPGS  121 (192)
T ss_dssp             CSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC----CCEECS--SSSTTCTTCCEEECCSSCCCEECTTS
T ss_pred             cccCCCceEeeeeccccccccccccccccccccceeeecccc----ccccCH--HHHhCCCcccccccCCccccccCHHH
Confidence            4567899999999999999855 4578889999999999987    555555  778999999999999999999654 6


Q ss_pred             cCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCCCCCcceEccc
Q 041851           87 IGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDAH  143 (151)
Q Consensus        87 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~l~  143 (151)
                      +..+++|+++++++|.+........-...++...+..+...-..|....+++.+++.
T Consensus       122 f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~~l~~~~l~~L~  178 (192)
T d1w8aa_         122 FEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLP  178 (192)
T ss_dssp             STTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSC
T ss_pred             hcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCChhhcCCEeeecC
Confidence            789999999999999887443322212234444555543333445444444444443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.6e-12  Score=88.26  Aligned_cols=112  Identities=26%  Similarity=0.327  Sum_probs=95.4

Q ss_pred             hhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-cCcc
Q 041851            9 DELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-LPEN   86 (151)
Q Consensus         9 ~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~   86 (151)
                      ..+..+.+|+.+++++|.++.+++ .+..+.+++.+++.+|.    +....+  ..+..+++|+.+++++|.+.+ .|..
T Consensus       123 ~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~----l~~l~~--~~f~~l~~L~~l~l~~N~l~~i~~~~  196 (284)
T d1ozna_         123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR----ISSVPE--RAFRGLHSLDRLLLHQNRVAHVHPHA  196 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC----CCEECT--TTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             cccchhcccchhhhccccccccChhHhccccchhhcccccCc----ccccch--hhhccccccchhhhhhccccccChhH
Confidence            445678889999999999997764 67788999999999886    444445  678899999999999999998 5778


Q ss_pred             cCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcc
Q 041851           87 IGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCER  126 (151)
Q Consensus        87 ~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~  126 (151)
                      +..++++++|++++|.+..++. .+..+++|+.+++++|+.
T Consensus       197 f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             hhhhhhcccccccccccccccccccccccccCEEEecCCCC
Confidence            8999999999999999996665 677899999999999863

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.36  E-value=3.5e-12  Score=87.20  Aligned_cols=116  Identities=22%  Similarity=0.252  Sum_probs=94.8

Q ss_pred             cCCCCChhccCcccccccccccccce-ecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIR-EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGIT   81 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~   81 (151)
                      ++..+|..+  +++++.|++++|... ..+..+..+..++.+++++|.    +....+  ..+..+++|+.|++++|.++
T Consensus       161 ~l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~----l~~~~~--~~~~~l~~L~~L~L~~N~L~  232 (305)
T d1xkua_         161 NITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS----ISAVDN--GSLANTPHLRELHLNNNKLV  232 (305)
T ss_dssp             CCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC----CCEECT--TTGGGSTTCCEEECCSSCCS
T ss_pred             CccccCccc--CCccCEEECCCCcCCCCChhHhhcccccccccccccc----cccccc--ccccccccceeeeccccccc
Confidence            455666543  678999999999988 456678889999999999776    444444  66778899999999999999


Q ss_pred             ccCcccCCCCCCCEEeCCCCCCccCCc-------chhccCccCEEeccCCcc
Q 041851           82 RLPENIGQLSSLEELDLQENNFERIPE-------SITQRSKLGRLSLRYCER  126 (151)
Q Consensus        82 ~~~~~~~~l~~L~~L~l~~n~~~~~~~-------~~~~~~~L~~l~l~~n~~  126 (151)
                      ++|..+..+++|++|++++|.++.++.       ......+|+.+++++|+.
T Consensus       233 ~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         233 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            999899999999999999999987654       234557899999999973

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.34  E-value=6.2e-12  Score=88.03  Aligned_cols=137  Identities=19%  Similarity=0.270  Sum_probs=96.5

Q ss_pred             CCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCcccc--------------ccccccCCCCCCc
Q 041851            4 LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSL--------------SLPITLSLDGLHT   69 (151)
Q Consensus         4 l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~--------------~~~~~~~~~~~~~   69 (151)
                      +..+| .+..+++++.+++++|.++.+++ +..+++|+.+++..+........              .......+..+++
T Consensus       231 l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~  308 (384)
T d2omza2         231 LKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKN  308 (384)
T ss_dssp             CCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTT
T ss_pred             CCCcc-hhhcccccchhccccCccCCCCc-ccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcc
Confidence            44444 56678888888888888876653 66788888888876643221000              0000023456678


Q ss_pred             ccEEEcccCCCCccCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC--CCCCcceEcccCC
Q 041851           70 LTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK--LPCKLHELDAHHC  145 (151)
Q Consensus        70 L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~--~~~~l~~l~l~~~  145 (151)
                      ++.+++++|.+++++ .+..+++|+.|++++|.++.++ .+..+++|++|++++|. +..++.  .+++|+.|+++++
T Consensus       309 l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~-l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         309 LTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQ-ISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSEEECCSSCCSCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCCE
T ss_pred             cCeEECCCCCCCCCc-ccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCc-CCCChhhccCCCCCEeeCCCC
Confidence            889999999988865 4778899999999999888766 57888999999999885 555553  3478888888753

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=5.5e-12  Score=78.55  Aligned_cols=106  Identities=18%  Similarity=0.160  Sum_probs=69.1

Q ss_pred             cccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCcc-CcccCCCCCCC
Q 041851           16 ALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRL-PENIGQLSSLE   94 (151)
Q Consensus        16 ~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~l~~L~   94 (151)
                      ....++..++.+...|..+..+++++.+++..|+.   +....+  +.|..+++|+.|++++|+++.+ +..+..+++|+
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~---l~~i~~--~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQH---LQHLEL--RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSS---CCEECG--GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCcc---ccccCc--hhhccccccCcceeeccccCCccccccccccccc
Confidence            34456666666666666666677777777764421   222223  4566777777777777777775 34566777777


Q ss_pred             EEeCCCCCCccCCcchhccCccCEEeccCCcc
Q 041851           95 ELDLQENNFERIPESITQRSKLGRLSLRYCER  126 (151)
Q Consensus        95 ~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~  126 (151)
                      +|+|++|.++.+|.......+++.|++++|+.
T Consensus        84 ~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          84 RLNLSFNALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             EEECCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             ceeccCCCCcccChhhhccccccccccCCCcc
Confidence            77777777777766555555677777777753

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.2e-12  Score=78.65  Aligned_cols=96  Identities=21%  Similarity=0.145  Sum_probs=81.0

Q ss_pred             cCCCCChhccCcccccccccccc-cceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGT-AIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGI   80 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~-~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l   80 (151)
                      ++.++|..+..++++++|+++++ .++.++. .|..+++|+.|++++|+    +....+  ..|..+++|+.+++++|.+
T Consensus        19 ~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~----l~~i~~--~~f~~l~~L~~L~Ls~N~l   92 (156)
T d2ifga3          19 GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG----LRFVAP--DAFHFTPRLSRLNLSFNAL   92 (156)
T ss_dssp             CCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC----CCEECT--TGGGSCSCCCEEECCSSCC
T ss_pred             CCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccc----cCCccc--ccccccccccceeccCCCC
Confidence            45567888888999999999866 4887764 68889999999999887    554445  6788999999999999999


Q ss_pred             CccCcccCCCCCCCEEeCCCCCCc
Q 041851           81 TRLPENIGQLSSLEELDLQENNFE  104 (151)
Q Consensus        81 ~~~~~~~~~l~~L~~L~l~~n~~~  104 (151)
                      +.++........++.|++++|.+.
T Consensus        93 ~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          93 ESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cccChhhhccccccccccCCCccc
Confidence            998887777778999999999875

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.25  E-value=5.5e-11  Score=83.11  Aligned_cols=131  Identities=25%  Similarity=0.325  Sum_probs=92.5

Q ss_pred             CCCCChhccCcccccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCcc
Q 041851            4 LQRLPDELGNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRL   83 (151)
Q Consensus         4 l~~lp~~~~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~   83 (151)
                      +..++. ...+++++.|++++|.++.++ .+..+++++.+++..|....    .    ..++.+++|+.++++++.++++
T Consensus       209 i~~~~~-~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~----~----~~~~~~~~L~~L~l~~~~l~~~  278 (384)
T d2omza2         209 ISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISN----L----APLSGLTKLTELKLGANQISNI  278 (384)
T ss_dssp             CCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCC----C----GGGTTCTTCSEEECCSSCCCCC
T ss_pred             cCCCCc-ccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCC----C----CcccccccCCEeeccCcccCCC
Confidence            444443 456789999999999998765 57889999999999876322    1    1244556666666666655432


Q ss_pred             C---------------------cccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC--CCCCcceE
Q 041851           84 P---------------------ENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK--LPCKLHEL  140 (151)
Q Consensus        84 ~---------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~--~~~~l~~l  140 (151)
                      +                     ..+..+++++.+++++|.++.++ .+..+++|+.|++++|. ++.++.  .+++|+.|
T Consensus       279 ~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~-l~~l~~l~~l~~L~~L  356 (384)
T d2omza2         279 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNK-VSDVSSLANLTNINWL  356 (384)
T ss_dssp             GGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEE
T ss_pred             CccccccccccccccccccccccccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCC-CCCChhHcCCCCCCEE
Confidence            1                     13556678888888888888665 37788999999999984 555553  24788999


Q ss_pred             cccCCc
Q 041851          141 DAHHCT  146 (151)
Q Consensus       141 ~l~~~~  146 (151)
                      ++++|.
T Consensus       357 ~l~~N~  362 (384)
T d2omza2         357 SAGHNQ  362 (384)
T ss_dssp             ECCSSC
T ss_pred             ECCCCc
Confidence            888763

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.15  E-value=3.3e-10  Score=74.20  Aligned_cols=135  Identities=20%  Similarity=0.287  Sum_probs=86.3

Q ss_pred             cCcccccccccccccceecChhhhcCCCCCeeeccccccCCccc-c-------------ccccccCCCCCCcccEEEccc
Q 041851           12 GNLEALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMS-L-------------SLPITLSLDGLHTLTYLNLTD   77 (151)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~-~-------------~~~~~~~~~~~~~L~~l~l~~   77 (151)
                      ..+.+|+.|++.++.++.++ .+..+++|+.+++++|....... .             .....+.+..+++|+.+.+++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~  116 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTS  116 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTT
T ss_pred             HHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccccccccccccccccccccccccccccccccccccccc
Confidence            56889999999999999874 58899999999999886332100 0             000012344566667777666


Q ss_pred             CCCCccC---------------------cccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCC--CC
Q 041851           78 CGITRLP---------------------ENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSK--LP  134 (151)
Q Consensus        78 ~~l~~~~---------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~--~~  134 (151)
                      +...+..                     ..+..+++++.|++++|.++..+ .++.+++|+.+++++|. ++.++.  .+
T Consensus       117 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n~-l~~l~~l~~l  194 (227)
T d1h6ua2         117 TQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNK-ISDISPLASL  194 (227)
T ss_dssp             SCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCCGGGGGC
T ss_pred             ccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccch-hhcccccceecccCCCc-cCCChhhcCC
Confidence            6443211                     02334556667777766665443 36677788888888874 556654  24


Q ss_pred             CCcceEcccCCccccc
Q 041851          135 CKLHELDAHHCTALES  150 (151)
Q Consensus       135 ~~l~~l~l~~~~~l~~  150 (151)
                      ++|++|++++|+ +++
T Consensus       195 ~~L~~L~Ls~N~-lt~  209 (227)
T d1h6ua2         195 PNLIEVHLKNNQ-ISD  209 (227)
T ss_dssp             TTCCEEECTTSC-CCB
T ss_pred             CCCCEEECcCCc-CCC
Confidence            778888888773 543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.15  E-value=6.9e-13  Score=85.81  Aligned_cols=121  Identities=18%  Similarity=0.198  Sum_probs=92.9

Q ss_pred             cccccccccc--cceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCCCCC
Q 041851           16 ALWSLHAIGT--AIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSL   93 (151)
Q Consensus        16 ~L~~L~l~~~--~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L   93 (151)
                      .+..+++.+.  .++.++.++..+.+|+++++++|.    +.. +   +.+..+++|+.|++++|.+++++.....+++|
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~----I~~-i---~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L   95 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN----IEK-I---SSLSGMENLRILSLGRNLIKKIENLDAVADTL   95 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEE----ESC-C---CCHHHHTTCCEEECCEEEECSCSSHHHHHHHC
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccC----CCC-c---ccccCCccccChhhcccccccccccccccccc
Confidence            3445555543  355666789999999999999887    332 2   24667889999999999999887655667789


Q ss_pred             CEEeCCCCCCccCCcchhccCccCEEeccCCcccccCC-----CCCCCcceEcccCCc
Q 041851           94 EELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLS-----KLPCKLHELDAHHCT  146 (151)
Q Consensus        94 ~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-----~~~~~l~~l~l~~~~  146 (151)
                      +.|++++|.++.++ .+..+++|+.|++++|. +..++     ..+++|+.|++++++
T Consensus        96 ~~L~l~~N~i~~l~-~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_          96 EELWISYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             CEEECSEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccccccccccc-cccccccccccccccch-hccccccccccCCCccceeecCCCc
Confidence            99999999998764 47788999999999985 44443     235889999998764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=5.4e-10  Score=73.66  Aligned_cols=82  Identities=23%  Similarity=0.233  Sum_probs=60.6

Q ss_pred             CcccEEEcccCCCCccCcccCCCCCCCEE-eCCCCCCccCCc-chhccCccCEEeccCCcccccCCCC-CCCcceEcccC
Q 041851           68 HTLTYLNLTDCGITRLPENIGQLSSLEEL-DLQENNFERIPE-SITQRSKLGRLSLRYCERLQSLSKL-PCKLHELDAHH  144 (151)
Q Consensus        68 ~~L~~l~l~~~~l~~~~~~~~~l~~L~~L-~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~-~~~l~~l~l~~  144 (151)
                      ..+..+++.+|.+++++......+++..+ ++.+|.++.+|. .+.++++|++|++++|. ++.+|.. +.++..|...+
T Consensus       153 ~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~l~  231 (242)
T d1xwdc1         153 FESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARS  231 (242)
T ss_dssp             SSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCSSSCTTCCEEESSS
T ss_pred             ccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCHHHHcCCcccccCc
Confidence            36888999999999877766677777666 567788888876 46788999999999985 6777753 56666665554


Q ss_pred             Cccccc
Q 041851          145 CTALES  150 (151)
Q Consensus       145 ~~~l~~  150 (151)
                      +..+++
T Consensus       232 ~~~l~~  237 (242)
T d1xwdc1         232 TYNLKK  237 (242)
T ss_dssp             EESSSC
T ss_pred             CCCCCc
Confidence            444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2.8e-11  Score=82.16  Aligned_cols=36  Identities=17%  Similarity=0.232  Sum_probs=18.8

Q ss_pred             ccCcccccccccccccce-ecChhhhcCCCCCeeecc
Q 041851           11 LGNLEALWSLHAIGTAIR-EVPSSFFRLNNIDLLSFQ   46 (151)
Q Consensus        11 ~~~l~~L~~L~l~~~~i~-~~~~~~~~l~~L~~l~l~   46 (151)
                      +..+++|++|+++++.++ ..+..+..+++|++++++
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls  103 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  103 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             HHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence            445555555555555544 233344455555555555

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.96  E-value=9.2e-09  Score=70.60  Aligned_cols=69  Identities=25%  Similarity=0.396  Sum_probs=46.0

Q ss_pred             CCcccEEEcccCCCCccCcccCCCCCCCEEeCCCCCCccCCcchhccCccCEEeccCCcccccCCCCCCCcceEcc
Q 041851           67 LHTLTYLNLTDCGITRLPENIGQLSSLEELDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDA  142 (151)
Q Consensus        67 ~~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~l  142 (151)
                      +++|+.|++++|.++.+|..   +++|+.|++++|.++.+|..   +.+|+.|++++|+ ++.+|..+.++++|.+
T Consensus       283 ~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~L~~l~~~---~~~L~~L~L~~N~-L~~lp~~~~~L~~L~~  351 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPEL---PQNLKQLHVEYNP-LREFPDIPESVEDLRM  351 (353)
T ss_dssp             CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSCCCCCTTCCEEEC
T ss_pred             CCCCCEEECCCCccCccccc---cCCCCEEECCCCcCCccccc---cCCCCEEECcCCc-CCCCCccccccCeeEC
Confidence            45677777777777766532   46677777777777766642   3467777777775 6677766666776655

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.5e-09  Score=69.67  Aligned_cols=98  Identities=14%  Similarity=0.279  Sum_probs=68.4

Q ss_pred             cCCCCChhccCcccccccccccccceecCh-hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEccc-CCC
Q 041851            3 HLQRLPDELGNLEALWSLHAIGTAIREVPS-SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTD-CGI   80 (151)
Q Consensus         3 ~l~~lp~~~~~l~~L~~L~l~~~~i~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~-~~l   80 (151)
                      ++..+|..+.  +++++|++++|.++.+|. .|.++++|+++++++|..    ....+ ...|..++.++.+.+.. +.+
T Consensus        19 ~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~----~~~i~-~~~f~~l~~l~~l~~~~~n~l   91 (242)
T d1xwdc1          19 KVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV----LEVIE-ADVFSNLPKLHEIRIEKANNL   91 (242)
T ss_dssp             SCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTT----CCEEC-SSSEESCTTCCEEEEECCTTC
T ss_pred             CCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccc----cceee-ccccccccccccccccccccc
Confidence            5778887653  589999999999998876 678899999999998762    22222 03455667777776654 455


Q ss_pred             Cc-cCcccCCCCCCCEEeCCCCCCccCC
Q 041851           81 TR-LPENIGQLSSLEELDLQENNFERIP  107 (151)
Q Consensus        81 ~~-~~~~~~~l~~L~~L~l~~n~~~~~~  107 (151)
                      .. .+..+..+++|+++++++|.+...+
T Consensus        92 ~~~~~~~~~~l~~L~~l~l~~~~l~~~~  119 (242)
T d1xwdc1          92 LYINPEAFQNLPNLQYLLISNTGIKHLP  119 (242)
T ss_dssp             CEECTTSEECCTTCCEEEEESCCCCSCC
T ss_pred             cccccccccccccccccccchhhhcccc
Confidence            55 3345667778888888777766443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=7.8e-11  Score=79.91  Aligned_cols=84  Identities=21%  Similarity=0.253  Sum_probs=57.5

Q ss_pred             cCcccccccccccccce--ecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccC-CCCc--cCcc
Q 041851           12 GNLEALWSLHAIGTAIR--EVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDC-GITR--LPEN   86 (151)
Q Consensus        12 ~~l~~L~~L~l~~~~i~--~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-~l~~--~~~~   86 (151)
                      ....+|++|+++++.++  .+..-+..+++|+++++.++.    +.+..+  ..+..+++|+.+++++| .+++  +...
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~----l~~~~~--~~l~~~~~L~~L~Ls~c~~itd~~l~~l  116 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR----LSDPIV--NTLAKNSNLVRLNLSGCSGFSEFALQTL  116 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB----CCHHHH--HHHTTCTTCSEEECTTCBSCCHHHHHHH
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC----CCcHHH--HHHhcCCCCcCccccccccccccccchh
Confidence            35668999999998876  344456778999999999664    443444  45566777888888775 4654  3223


Q ss_pred             cCCCCCCCEEeCCCC
Q 041851           87 IGQLSSLEELDLQEN  101 (151)
Q Consensus        87 ~~~l~~L~~L~l~~n  101 (151)
                      ...+++|++|+++++
T Consensus       117 ~~~~~~L~~L~ls~c  131 (284)
T d2astb2         117 LSSCSRLDELNLSWC  131 (284)
T ss_dssp             HHHCTTCCEEECCCC
T ss_pred             hHHHHhccccccccc
Confidence            345677777777664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.89  E-value=1.3e-08  Score=69.80  Aligned_cols=109  Identities=21%  Similarity=0.297  Sum_probs=73.2

Q ss_pred             cccccccccccceecChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCcccCCCCCCCE
Q 041851           16 ALWSLHAIGTAIREVPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPENIGQLSSLEE   95 (151)
Q Consensus        16 ~L~~L~l~~~~i~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~l~~L~~   95 (151)
                      ++++|+++++.++.+|+.   .++|++|+++.|+    +. .+|  +.   +.+|+.|++.+|.++.++..   .+.|++
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~----l~-~lp--~~---~~~L~~L~l~~n~l~~l~~l---p~~L~~  102 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASCNS----LT-ELP--EL---PQSLKSLLVDNNNLKALSDL---PPLLEY  102 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCSSC----CS-SCC--CC---CTTCCEEECCSSCCSCCCSC---CTTCCE
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCC----Cc-ccc--cc---hhhhhhhhhhhcccchhhhh---cccccc
Confidence            577888888888887753   4678888888765    32 334  32   34678888888887765431   246888


Q ss_pred             EeCCCCCCccCCcchhccCccCEEeccCCcccccCCCCCCCcceEcc
Q 041851           96 LDLQENNFERIPESITQRSKLGRLSLRYCERLQSLSKLPCKLHELDA  142 (151)
Q Consensus        96 L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~l  142 (151)
                      |++++|.+..+|. ++.+++|+.+++++|. ....+.....+..+.+
T Consensus       103 L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~l~~  147 (353)
T d1jl5a_         103 LGVSNNQLEKLPE-LQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAA  147 (353)
T ss_dssp             EECCSSCCSSCCC-CTTCTTCCEEECCSSC-CSCCCCCCTTCCEEEC
T ss_pred             ccccccccccccc-hhhhccceeecccccc-ccccccccccccchhh
Confidence            8888888887775 4667888888888764 3444444444444443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.9e-08  Score=71.09  Aligned_cols=108  Identities=13%  Similarity=0.126  Sum_probs=61.2

Q ss_pred             ccccccccccccee--cChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc-----cCcccC
Q 041851           16 ALWSLHAIGTAIRE--VPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR-----LPENIG   88 (151)
Q Consensus        16 ~L~~L~l~~~~i~~--~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-----~~~~~~   88 (151)
                      +|+.|+++++.++.  +..-+..+++++.+++.+|.....-...++  ..+..+++|+.|++++|.+++     +...+.
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~--~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS--SALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH--HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHH--HHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            56777777777763  233355567777777775541110001112  334566677777777777753     122222


Q ss_pred             C-CCCCCEEeCCCCCCcc-----CCcchhccCccCEEeccCCc
Q 041851           89 Q-LSSLEELDLQENNFER-----IPESITQRSKLGRLSLRYCE  125 (151)
Q Consensus        89 ~-l~~L~~L~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~  125 (151)
                      . ..+|+.|++++|.++.     ++..+..+++|+.|++++|.
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence            2 2467777777777652     23344556677777777764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=2.6e-08  Score=61.82  Aligned_cols=63  Identities=24%  Similarity=0.239  Sum_probs=42.8

Q ss_pred             CCCcccEEEcccCCCCcc---CcccCCCCCCCEEeCCCCCCccCCc-chhccCccCEEeccCCcccc
Q 041851           66 GLHTLTYLNLTDCGITRL---PENIGQLSSLEELDLQENNFERIPE-SITQRSKLGRLSLRYCERLQ  128 (151)
Q Consensus        66 ~~~~L~~l~l~~~~l~~~---~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~  128 (151)
                      .++.|+.+++++|+++++   +..+..+++|+.|++++|.++.++. .......++.+++++|+...
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            466788888888887764   3345567888888888888876655 22234567788888876543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.30  E-value=1.3e-07  Score=65.21  Aligned_cols=135  Identities=19%  Similarity=0.205  Sum_probs=77.8

Q ss_pred             hccCccccccccccccccee-----cChhhhcCCCCCeeeccccccCCc-------------------------------
Q 041851           10 ELGNLEALWSLHAIGTAIRE-----VPSSFFRLNNIDLLSFQRSRGHKQ-------------------------------   53 (151)
Q Consensus        10 ~~~~l~~L~~L~l~~~~i~~-----~~~~~~~l~~L~~l~l~~n~~~~~-------------------------------   53 (151)
                      .+..+++|+.|++++|.++.     +...+...++|+++++.+|.....                               
T Consensus        88 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~  167 (344)
T d2ca6a1          88 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR  167 (344)
T ss_dssp             HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred             HHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccc
Confidence            34566778888888887663     223445567788888876531100                               


Q ss_pred             --ccc----ccccccCCCCCCcccEEEcccCCCCc------cCcccCCCCCCCEEeCCCCCCc-c----CCcchhccCcc
Q 041851           54 --MSL----SLPITLSLDGLHTLTYLNLTDCGITR------LPENIGQLSSLEELDLQENNFE-R----IPESITQRSKL  116 (151)
Q Consensus        54 --~~~----~~~~~~~~~~~~~L~~l~l~~~~l~~------~~~~~~~l~~L~~L~l~~n~~~-~----~~~~~~~~~~L  116 (151)
                        +..    .+.  ..+...++++.+++++|.+++      +.+.+...++|+.|++++|.++ .    +...+..+++|
T Consensus       168 n~i~~~~~~~l~--~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L  245 (344)
T d2ca6a1         168 NRLENGSMKEWA--KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL  245 (344)
T ss_dssp             SCCTGGGHHHHH--HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred             cccccccccccc--chhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccc
Confidence              000    000  112234567777887777763      2234556677888888877765 1    23345566778


Q ss_pred             CEEeccCCccccc----C----CC-CCCCcceEcccCCc
Q 041851          117 GRLSLRYCERLQS----L----SK-LPCKLHELDAHHCT  146 (151)
Q Consensus       117 ~~l~l~~n~~~~~----~----~~-~~~~l~~l~l~~~~  146 (151)
                      +.|++++|..-..    +    .. ....+++|++++|.
T Consensus       246 ~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             hhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc
Confidence            8888887753211    1    11 12557778887764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.8e-07  Score=57.91  Aligned_cols=84  Identities=20%  Similarity=0.153  Sum_probs=59.4

Q ss_pred             hhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCccCc-ccCCCCCCCEEeCCCCCCccC-Cc--
Q 041851           33 SFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITRLPE-NIGQLSSLEELDLQENNFERI-PE--  108 (151)
Q Consensus        33 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~n~~~~~-~~--  108 (151)
                      ....+++|+.+++++|+... +. ..+  ..+..+++|+.+++++|.++++++ .......++.+++++|.+... ..  
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~-l~-~~~--~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~  135 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYR-LD-DMS--SIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQS  135 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCC-CS-GGG--THHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHH
T ss_pred             HHHhCCCCCEeeCCCccccC-Cc-hhH--HHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccch
Confidence            34568999999999987322 11 122  345568899999999999998654 233456799999999988733 21  


Q ss_pred             -----chhccCccCEEe
Q 041851          109 -----SITQRSKLGRLS  120 (151)
Q Consensus       109 -----~~~~~~~L~~l~  120 (151)
                           .+..+|+|+.||
T Consensus       136 ~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         136 TYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHTTSTTCCEET
T ss_pred             hHHHHHHHHCCCCCEEC
Confidence                 245678888886

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.20  E-value=1.9e-07  Score=64.30  Aligned_cols=132  Identities=18%  Similarity=0.146  Sum_probs=79.5

Q ss_pred             ccccccccccccccee-----cChhhhcCCCCCeeeccccccCCc-cccccccccCCCCCCcccEEEcccCCCCc-----
Q 041851           14 LEALWSLHAIGTAIRE-----VPSSFFRLNNIDLLSFQRSRGHKQ-MSLSLPITLSLDGLHTLTYLNLTDCGITR-----   82 (151)
Q Consensus        14 l~~L~~L~l~~~~i~~-----~~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-----   82 (151)
                      .+.++.+.++++.++.     +...+.....++.+++..|..... +.....  ..+..+++|+.|++++|.+++     
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~--~~l~~~~~L~~L~Ls~N~i~~~g~~~  234 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL--EGLAYCQELKVLDLQDNTFTHLGSSA  234 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHH--TTGGGCTTCCEEECCSSCCHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchh--hhhcchhhhccccccccccccccccc
Confidence            3455566666665541     222345567788888886652110 001122  445567788899999888764     


Q ss_pred             cCcccCCCCCCCEEeCCCCCCc-cCCc----chhc--cCccCEEeccCCcccc----cCCC----CCCCcceEcccCCcc
Q 041851           83 LPENIGQLSSLEELDLQENNFE-RIPE----SITQ--RSKLGRLSLRYCERLQ----SLSK----LPCKLHELDAHHCTA  147 (151)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~n~~~-~~~~----~~~~--~~~L~~l~l~~n~~~~----~~~~----~~~~l~~l~l~~~~~  147 (151)
                      +.+.+...++|++|++++|.++ ....    .+..  .+.|+.|++++|..-.    .+..    ..++|++|+++++..
T Consensus       235 L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         235 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             HHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             ccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            3445677888999999999876 2112    2322  2468899999886321    1111    235788888887653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.89  E-value=2.3e-06  Score=53.05  Aligned_cols=109  Identities=15%  Similarity=0.139  Sum_probs=69.4

Q ss_pred             cCcccccccccccc-cce-e----cChhhhcCCCCCeeeccccccCCccccccc--cccCCCCCCcccEEEcccCCCCc-
Q 041851           12 GNLEALWSLHAIGT-AIR-E----VPSSFFRLNNIDLLSFQRSRGHKQMSLSLP--ITLSLDGLHTLTYLNLTDCGITR-   82 (151)
Q Consensus        12 ~~l~~L~~L~l~~~-~i~-~----~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~--~~~~~~~~~~L~~l~l~~~~l~~-   82 (151)
                      ...+.|++|+++++ .++ +    +-..+.....|+.|++++|.    +.....  ..+.+...++|+.+++++|.+++ 
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~----l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~   87 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA----ISDSEARGLIELIETSPSLRVLNVESNFLTPE   87 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC----CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc----cchhHHHHHhhhhhhcccccceeeehhhcchH
Confidence            34578999999874 465 1    12245556778899998765    322211  00233455778899999998885 


Q ss_pred             ----cCcccCCCCCCCEEeCCCCCCccC--------CcchhccCccCEEeccCC
Q 041851           83 ----LPENIGQLSSLEELDLQENNFERI--------PESITQRSKLGRLSLRYC  124 (151)
Q Consensus        83 ----~~~~~~~l~~L~~L~l~~n~~~~~--------~~~~~~~~~L~~l~l~~n  124 (151)
                          +...+..-+.|++|++++|....+        ...+...++|+.++++.+
T Consensus        88 g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          88 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence                334566677889999988765432        223444577888887654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=4.9e-06  Score=58.40  Aligned_cols=101  Identities=27%  Similarity=0.363  Sum_probs=70.5

Q ss_pred             CCCeeeccccccCCccccc-cccccCCCCCCcccEEEcccCCCCc-----cCcccCCCCCCCEEeCCCCCCcc-CCcchh
Q 041851           39 NIDLLSFQRSRGHKQMSLS-LPITLSLDGLHTLTYLNLTDCGITR-----LPENIGQLSSLEELDLQENNFER-IPESIT  111 (151)
Q Consensus        39 ~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~L~~l~l~~~~l~~-----~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~  111 (151)
                      +|+.++++.|+    +.+. +.  +.+..+++++.+++.+|++++     +...+...++|++|++++|.++. -...+.
T Consensus         3 ~l~~ld~~~~~----i~~~~~~--~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~   76 (460)
T d1z7xw1           3 DIQSLDIQCEE----LSDARWA--ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL   76 (460)
T ss_dssp             EEEEEEEESCC----CCHHHHH--HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             CCCEEEeeCCc----CChHHHH--HHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHH
Confidence            57889998776    3321 12  334467889999999999984     34566789999999999998862 111222


Q ss_pred             -----ccCccCEEeccCCccccc-----CC---CCCCCcceEcccCCc
Q 041851          112 -----QRSKLGRLSLRYCERLQS-----LS---KLPCKLHELDAHHCT  146 (151)
Q Consensus       112 -----~~~~L~~l~l~~n~~~~~-----~~---~~~~~l~~l~l~~~~  146 (151)
                           ...+|+.|++++|. +++     ++   ...++|++|+++++.
T Consensus        77 ~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          77 QGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHHhcCCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence                 12479999999986 332     22   234789999998875

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.23  E-value=3.6e-05  Score=47.43  Aligned_cols=104  Identities=13%  Similarity=0.102  Sum_probs=69.4

Q ss_pred             cCCCCCeeeccccccCCccccc----cccccCCCCCCcccEEEcccCCCCc-----cCcccCCCCCCCEEeCCCCCCc-c
Q 041851           36 RLNNIDLLSFQRSRGHKQMSLS----LPITLSLDGLHTLTYLNLTDCGITR-----LPENIGQLSSLEELDLQENNFE-R  105 (151)
Q Consensus        36 ~l~~L~~l~l~~n~~~~~~~~~----~~~~~~~~~~~~L~~l~l~~~~l~~-----~~~~~~~l~~L~~L~l~~n~~~-~  105 (151)
                      +.+.|+.+++.++..   +..+    +.  ..+...++++.|++++|.+++     +...+...+.|+.|++++|.++ .
T Consensus        13 n~~~L~~L~L~~~~~---i~~~~~~~l~--~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~   87 (167)
T d1pgva_          13 DDTDLKEVNINNMKR---VSKERIRSLI--EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE   87 (167)
T ss_dssp             TCSSCCEEECTTCCS---SCHHHHHHHH--HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             CCCCCcEEEeCCCCC---CCHHHHHHHH--HHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchH
Confidence            357899999985321   2221    22  345567789999999999985     3335556789999999999887 2


Q ss_pred             ----CCcchhccCccCEEeccCCcccccCC--------C---CCCCcceEcccCC
Q 041851          106 ----IPESITQRSKLGRLSLRYCERLQSLS--------K---LPCKLHELDAHHC  145 (151)
Q Consensus       106 ----~~~~~~~~~~L~~l~l~~n~~~~~~~--------~---~~~~l~~l~l~~~  145 (151)
                          +-.++...++|+.|++++|. ...+.        .   ..++++.|+++..
T Consensus        88 g~~~l~~aL~~n~sL~~L~l~~n~-~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          88 LLARLLRSTLVTQSIVEFKADNQR-QSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCS-SCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHHhCCcCCEEECCCCc-CCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence                22245566789999999873 22222        1   1266777777543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.20  E-value=2.1e-05  Score=48.38  Aligned_cols=111  Identities=19%  Similarity=0.212  Sum_probs=66.1

Q ss_pred             cCccccccccccc-ccce-e----cChhhhcCCCCCeeeccccccCCccccccccccCCCCCCcccEEEcccCCCCc---
Q 041851           12 GNLEALWSLHAIG-TAIR-E----VPSSFFRLNNIDLLSFQRSRGHKQMSLSLPITLSLDGLHTLTYLNLTDCGITR---   82 (151)
Q Consensus        12 ~~l~~L~~L~l~~-~~i~-~----~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~---   82 (151)
                      ...+.|++|++++ +.++ .    +-..+...++|++|++++|.........+.  +.+...++++.+++..+.+++   
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~--~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA--EMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH--HHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHH--HHHhhcccchhhhhccccccchhH
Confidence            4567888888887 4465 1    223445677788888887652111011112  334455678888888888774   


Q ss_pred             --cCcccCCCCCCCEEeC--CCCCCc-c----CCcchhccCccCEEeccCC
Q 041851           83 --LPENIGQLSSLEELDL--QENNFE-R----IPESITQRSKLGRLSLRYC  124 (151)
Q Consensus        83 --~~~~~~~l~~L~~L~l--~~n~~~-~----~~~~~~~~~~L~~l~l~~n  124 (151)
                        +.+.+...+.++.++|  ++|.+. .    +...+...+.|+.|++..+
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence              3345666777877555  444554 1    2334456677888887654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.94  E-value=0.0013  Score=39.89  Aligned_cols=105  Identities=10%  Similarity=0.138  Sum_probs=68.1

Q ss_pred             hcCCCCCeeeccccccCCcccc----ccccccCCCCCCcccEEEcccCCCCc-----cCcccCCCCCCCEEeCCCCCCc-
Q 041851           35 FRLNNIDLLSFQRSRGHKQMSL----SLPITLSLDGLHTLTYLNLTDCGITR-----LPENIGQLSSLEELDLQENNFE-  104 (151)
Q Consensus        35 ~~l~~L~~l~l~~n~~~~~~~~----~~~~~~~~~~~~~L~~l~l~~~~l~~-----~~~~~~~l~~L~~L~l~~n~~~-  104 (151)
                      ...++|+++++.++..   +..    .+.  ..+...++|+.|++++|.+++     +...+...+.++.++++++.++ 
T Consensus        14 ~~~~~L~~L~L~~~~~---i~~~~~~~l~--~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~   88 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMN---IPVPTLKACA--EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG   88 (166)
T ss_dssp             TTCTTCCEEECTTCTT---CCHHHHHHHH--HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             hcCCCCcEEEcCCCCC---CCHHHHHHHH--HHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccc
Confidence            4568899999985321   221    122  445577889999999999885     3345667789999999999876 


Q ss_pred             c----CCcchhccCccCEEeccC--Ccccc----cCCC---CCCCcceEcccC
Q 041851          105 R----IPESITQRSKLGRLSLRY--CERLQ----SLSK---LPCKLHELDAHH  144 (151)
Q Consensus       105 ~----~~~~~~~~~~L~~l~l~~--n~~~~----~~~~---~~~~l~~l~l~~  144 (151)
                      .    +...+...++++.+++..  |..-.    .+..   ..+++++|++..
T Consensus        89 ~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          89 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             hhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            2    233556667888877754  33211    1211   236788887764