Citrus Sinensis ID: 041855

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
KEIWRYFMSQARLAKLNYTTYHQREAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWISRIRSPFAKKDSYNEWNYSKLRFFFYPELSAAGNDKVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTWWHRLPKRINHLKVFSKQDDKEHQVGDGLYAIHYLGLKPWM
cHHHHHcHHHHHHHccccccccccEEEEEEcccccccHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHcccEEEEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEcccHHHHHHHHHHHccccccccccHHHHHHHHHccccccccccccccccccccHHHHcccccEEEEEccccccc
ccEEEccHHHccHHccccccccccEEEEEEEHccHHHHHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHcHEEEEcccccccccccccEEcccccEEEccccHHccccccccEEcccEEEEcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcHcccHHHHHHHHccHHHHHccccEEEEEEEcccccc
KEIWRYFMSQARLAKLNYTTYHQREAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGwktkwisrirspfakkdsynewnysklrfffypelsaagndkvlfnsgvmviepslckfeDLMLKSFQvssynggdqgflNEVFTWWHRLpkrinhlkvfskqddkehqvgdGLYAIHYLGLKPWM
KEIWRYFMSQARLAKLNYTTYHQREAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLhdksisgkslrslraagwktkwisrirspfakkdsynEWNYSKLRFFFYPELSAAGNDKVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTWWHRLPKRINHLKVFskqddkehqvgdGLYAIHYLGLKPWM
KEIWRYFMSQARLAKLNYTTYHQREAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWISRIRSPFAKKDSYNEWNYSKLRFFFYPELSAAGNDKVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTWWHRLPKRINHLKVFSKQDDKEHQVGDGLYAIHYLGLKPWM
**IWRYFMSQARLAKLNYTTYHQREAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWISRIRSPFAKKDSYNEWNYSKLRFFFYPELSAAGNDKVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTWWHRLPKRINHLKVFSKQDDKEHQVGDGLYAIHYLGLK***
************************EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWISRIRSPFAKKDSYNEWNYSKLRFFFYPELSAAGNDKVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTWWHRLPKRINHLKVFSKQDDKEHQVGDGLYAIHYLGLKPWM
KEIWRYFMSQARLAKLNYTTYHQREAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWISRIRSPFAKKDSYNEWNYSKLRFFFYPELSAAGNDKVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTWWHRLPKRINHLKVFSKQDDKEHQVGDGLYAIHYLGLKPWM
*EIWRYFMSQARLAKLNYTTYHQREAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWISRIRSPFAKKDSYNEWNYSKLRFFFYPELSAAGNDKVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTWWHRLPKRINHLKVFSKQDDKEHQVGDGLYAIHYLGLKP*M
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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KEIWRYFMSQARLAKLNYTTYHQREAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWISRIRSPFAKKDSYNEWNYSKLRFFFYPELSAAGNDKVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTWWHRLPKRINHLKVFSKQDDKEHQVGDGLYAIHYLGLKPWM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query203 2.2.26 [Sep-21-2011]
Q9FZ37557 Putative UDP-glucuronate: yes no 0.886 0.323 0.580 8e-67
F4HZC3566 Putative UDP-glucuronate: no no 0.886 0.318 0.599 2e-64
Q8GWW4596 UDP-glucuronate:xylan alp no no 0.911 0.310 0.513 4e-59
Q9LSB1 659 UDP-glucuronate:xylan alp no no 0.891 0.274 0.506 4e-53
Q8W4A7 618 Putative UDP-glucuronate: no no 0.916 0.300 0.466 4e-47
Q8GWB7 537 Putative glucuronosyltran no no 0.669 0.253 0.335 4e-14
P46976 350 Glycogenin-1 OS=Homo sapi yes no 0.866 0.502 0.260 2e-07
Q9R062 333 Glycogenin-1 OS=Mus muscu yes no 0.684 0.417 0.273 3e-07
P13280 333 Glycogenin-1 OS=Oryctolag yes no 0.866 0.528 0.260 4e-07
O08730 333 Glycogenin-1 OS=Rattus no yes no 0.866 0.528 0.264 5e-07
>sp|Q9FZ37|GUX4_ARATH Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4 OS=Arabidopsis thaliana GN=GUX4 PE=3 SV=1 Back     alignment and function desciption
 Score =  253 bits (645), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 119/205 (58%), Positives = 149/205 (72%), Gaps = 25/205 (12%)

Query: 24  REAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWI 83
           R AYVT+LHSSEAYVCGAIALA+SI Q  S +D++LLHD +I+ KSL  L AAGW  + I
Sbjct: 270 RVAYVTVLHSSEAYVCGAIALAQSIRQSGSHKDMILLHDHTITNKSLIGLSAAGWNLRLI 329

Query: 84  SRIRSPFAKKDSYNEWNYSKLR-------------------------FFFYPELSAAGND 118
            RIRSPF++KDSYNEWNYSKLR                          F+YP+LSA+GND
Sbjct: 330 DRIRSPFSQKDSYNEWNYSKLRVWQVTDYDKLVFIDADFIILKKLDHLFYYPQLSASGND 389

Query: 119 KVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTWWHRLPKRINHLKVFS 178
           KVLFNSG+MV+EPS C F+DLM KSF++ SYNGGDQGFLNE+F WWHRL KR+N +K F 
Sbjct: 390 KVLFNSGIMVLEPSACMFKDLMEKSFKIESYNGGDQGFLNEIFVWWHRLSKRVNTMKYFD 449

Query: 179 KQDDKEHQVGDGLYAIHYLGLKPWM 203
           +++ + H + + +  +HYLGLKPW+
Sbjct: 450 EKNHRRHDLPENVEGLHYLGLKPWV 474
May be involved in the substitutions of the xylan backbone in stem glucuronoxylan.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -
>sp|F4HZC3|GUX5_ARATH Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 OS=Arabidopsis thaliana GN=GUX5 PE=2 SV=1 Back     alignment and function description
>sp|Q8GWW4|GUX2_ARATH UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 OS=Arabidopsis thaliana GN=GUX2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSB1|GUX1_ARATH UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 OS=Arabidopsis thaliana GN=GUX1 PE=2 SV=1 Back     alignment and function description
>sp|Q8W4A7|GUX3_ARATH Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 OS=Arabidopsis thaliana GN=GUX3 PE=2 SV=1 Back     alignment and function description
>sp|Q8GWB7|GUX6_ARATH Putative glucuronosyltransferase PGSIP6 OS=Arabidopsis thaliana GN=PGSIP6 PE=2 SV=1 Back     alignment and function description
>sp|P46976|GLYG_HUMAN Glycogenin-1 OS=Homo sapiens GN=GYG1 PE=1 SV=4 Back     alignment and function description
>sp|Q9R062|GLYG_MOUSE Glycogenin-1 OS=Mus musculus GN=Gyg1 PE=2 SV=3 Back     alignment and function description
>sp|P13280|GLYG_RABIT Glycogenin-1 OS=Oryctolagus cuniculus GN=GYG1 PE=1 SV=3 Back     alignment and function description
>sp|O08730|GLYG_RAT Glycogenin-1 OS=Rattus norvegicus GN=Gyg1 PE=2 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query203
224131048 430 predicted protein [Populus trichocarpa] 0.990 0.467 0.622 3e-73
224125270 425 predicted protein [Populus trichocarpa] 0.950 0.454 0.621 3e-71
147866346 546 hypothetical protein VITISV_042631 [Viti 0.990 0.368 0.592 6e-70
225450971 546 PREDICTED: uncharacterized protein LOC10 0.990 0.368 0.587 7e-70
150036251 614 glycosyl transferase [Cucumis melo subsp 0.990 0.327 0.580 5e-69
449443179 607 PREDICTED: putative UDP-glucuronate:xyla 0.990 0.331 0.571 2e-68
15221943 557 plant glycogenin-like starch initiation 0.886 0.323 0.580 4e-65
297848078 560 hypothetical protein ARALYDRAFT_337776 [ 0.886 0.321 0.580 8e-65
297843694 527 hypothetical protein ARALYDRAFT_470978 [ 0.886 0.341 0.608 1e-64
186478283 566 plant glycogenin-like starch initiation 0.886 0.318 0.599 8e-63
>gi|224131048|ref|XP_002328440.1| predicted protein [Populus trichocarpa] gi|222838155|gb|EEE76520.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 142/228 (62%), Positives = 167/228 (73%), Gaps = 27/228 (11%)

Query: 2   EIWRYFMSQ-ARLAKLN-YTTYHQREAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVL 59
           EI RY M++ +   KLN +  YHQR AY T+LHSSEAYVCGAIALA+SIIQ NS+ DLVL
Sbjct: 120 EIQRYKMAEYSTTRKLNDHKLYHQRVAYATVLHSSEAYVCGAIALAQSIIQNNSTNDLVL 179

Query: 60  LHDKSISGKSLRSLRAAGWKTKWISRIRSPFAKKDSYNEWNYSKLR-------------- 105
           LHD S+S KSL+ LR AGWKTK I  IRSPFA+K+SYNEWNYSKLR              
Sbjct: 180 LHDSSLSQKSLQGLRDAGWKTKQIQPIRSPFARKNSYNEWNYSKLRLWQLTDYDKVIFID 239

Query: 106 -----------FFFYPELSAAGNDKVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQ 154
                      FF YP+LSAA NDKVLFNSG+MVIEPS C FED+M KS ++ SYNGGDQ
Sbjct: 240 ADLIILKNIDKFFAYPQLSAAPNDKVLFNSGIMVIEPSTCLFEDMMSKSRRLMSYNGGDQ 299

Query: 155 GFLNEVFTWWHRLPKRINHLKVFSKQDDKEHQVGDGLYAIHYLGLKPW 202
           GFLNEVFTWWHRLP ++N+LK+  +QD+  H++  G Y IH+LGLKPW
Sbjct: 300 GFLNEVFTWWHRLPGKLNYLKICKRQDNPNHEMEKGTYTIHFLGLKPW 347

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224125270|ref|XP_002319544.1| predicted protein [Populus trichocarpa] gi|222857920|gb|EEE95467.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147866346|emb|CAN81983.1| hypothetical protein VITISV_042631 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225450971|ref|XP_002280832.1| PREDICTED: uncharacterized protein LOC100247620 [Vitis vinifera] gi|296088322|emb|CBI36767.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|150036251|gb|ABR67414.1| glycosyl transferase [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|449443179|ref|XP_004139358.1| PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4-like [Cucumis sativus] gi|449483044|ref|XP_004156478.1| PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15221943|ref|NP_175891.1| plant glycogenin-like starch initiation protein 4 [Arabidopsis thaliana] gi|75173348|sp|Q9FZ37.1|GUX4_ARATH RecName: Full=Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4; Short=UDP-GlcA:xylan glucuronyltransferase 4; AltName: Full=Glycogenin-like protein 4; AltName: Full=Plant glycogenin-like starch initiation protein 4; AltName: Full=Protein GLUCURONIC ACID SUBSTITUTION OF XYLAN 4; Short=AtGUX4 gi|9857520|gb|AAG00875.1|AC064840_6 Hypothetical protein [Arabidopsis thaliana] gi|12322173|gb|AAG51129.1|AC069144_26 hypothetical protein [Arabidopsis thaliana] gi|332195044|gb|AEE33165.1| plant glycogenin-like starch initiation protein 4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297848078|ref|XP_002891920.1| hypothetical protein ARALYDRAFT_337776 [Arabidopsis lyrata subsp. lyrata] gi|297337762|gb|EFH68179.1| hypothetical protein ARALYDRAFT_337776 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297843694|ref|XP_002889728.1| hypothetical protein ARALYDRAFT_470978 [Arabidopsis lyrata subsp. lyrata] gi|297335570|gb|EFH65987.1| hypothetical protein ARALYDRAFT_470978 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|186478283|ref|NP_172373.3| plant glycogenin-like starch initiation protein 5 [Arabidopsis thaliana] gi|385178635|sp|F4HZC3.1|GUX5_ARATH RecName: Full=Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5; Short=UDP-GlcA:xylan glucuronyltransferase 5; AltName: Full=Glycogenin-like protein 5; AltName: Full=Plant glycogenin-like starch initiation protein 5; AltName: Full=Protein GLUCURONIC ACID SUBSTITUTION OF XYLAN 5; Short=AtGUX5 gi|332190259|gb|AEE28380.1| plant glycogenin-like starch initiation protein 5 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query203
TAIR|locus:2036024566 PGSIP5 "plant glycogenin-like 0.472 0.169 0.683 1.4e-62
TAIR|locus:2011045557 PGSIP4 "AT1G54940" [Arabidopsi 0.477 0.174 0.628 1.5e-34
TAIR|locus:2094014 659 PGSIP1 "plant glycogenin-like 0.477 0.147 0.547 4e-25
TAIR|locus:2196020 618 PGSIP2 "plant glycogenin-like 0.477 0.156 0.523 8.3e-23
TAIR|locus:2146173 537 PGSIP6 "plant glycogenin-like 0.192 0.072 0.615 2.2e-13
TAIR|locus:2136829336 GolS6 "galactinol synthase 6" 0.453 0.273 0.357 4.1e-10
WB|WBGene00012020300 gyg-2 [Caenorhabditis elegans 0.729 0.493 0.303 1.8e-07
ZFIN|ZDB-GENE-080723-74 409 gyg2 "glycogenin 2" [Danio rer 0.467 0.232 0.355 2.6e-07
WB|WBGene00011684 449 T10B10.8 [Caenorhabditis elega 0.206 0.093 0.452 2.9e-07
UNIPROTKB|E1BYL9 332 E1BYL9 "Uncharacterized protei 0.394 0.240 0.355 5.2e-07
TAIR|locus:2036024 PGSIP5 "plant glycogenin-like starch initiation protein 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 367 (134.2 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
 Identities = 67/98 (68%), Positives = 77/98 (78%)

Query:   107 FFYPELSAAGNDKVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTWWHR 166
             F YP+LSAAGN+KVLFNSGVMV+EPS C FEDLMLKSF++ SYNGGDQGFLNE F WWHR
Sbjct:   385 FSYPQLSAAGNNKVLFNSGVMVLEPSACLFEDLMLKSFKIGSYNGGDQGFLNEYFVWWHR 444

Query:   167 LPKRINHLKVFSKQD--DKEHQVGDGLYAIHYLGLKPW 202
             L KR+N +K F  +   DK   + + L  IHYLGLKPW
Sbjct:   445 LSKRLNTMKYFGDESRHDKARNLPENLEGIHYLGLKPW 482
GO:0005794 "Golgi apparatus" evidence=ISM;IDA
GO:0009058 "biosynthetic process" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA;ISS
GO:0005982 "starch metabolic process" evidence=RCA
GO:0006826 "iron ion transport" evidence=RCA
GO:0010106 "cellular response to iron ion starvation" evidence=RCA
GO:0010167 "response to nitrate" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
TAIR|locus:2011045 PGSIP4 "AT1G54940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094014 PGSIP1 "plant glycogenin-like starch initiation protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196020 PGSIP2 "plant glycogenin-like starch initiation protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146173 PGSIP6 "plant glycogenin-like starch initiation protein 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136829 GolS6 "galactinol synthase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00012020 gyg-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080723-74 gyg2 "glycogenin 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00011684 T10B10.8 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYL9 E1BYL9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_scaffold_70000240
hypothetical protein (430 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query203
cd02537240 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 7e-43
pfam01501248 pfam01501, Glyco_transf_8, Glycosyl transferase fa 4e-19
cd04194248 cd04194, GT8_A4GalT_like, A4GalT_like proteins cat 0.004
>gnl|CDD|133018 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information 
 Score =  143 bits (363), Expect = 7e-43
 Identities = 68/214 (31%), Positives = 97/214 (45%), Gaps = 36/214 (16%)

Query: 25  EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84
           EAYVT+L + + Y+ GA+ L  S+ +  SS DLV+L    +S +S  +L   GW  + + 
Sbjct: 1   EAYVTLLTNDD-YLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEVGWIVREVE 59

Query: 85  RIRSPFAK---KDSYNEWNYSKLR--------------------------FFFYPELSAA 115
            I  P +    K    +  Y+KLR                          F    E +AA
Sbjct: 60  PIDPPDSANLLKRPRFKDTYTKLRLWNLTEYDKVVFLDADTLVLRNIDELFDLPGEFAAA 119

Query: 116 GNDK--VLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTW---WHRLPKR 170
            +     LFNSGV V++PS   F DL+       S++GGDQG LN  F+    W RLP  
Sbjct: 120 PDCGWPDLFNSGVFVLKPSEETFNDLLDALQDTPSFDGGDQGLLNSYFSDRGIWKRLPFT 179

Query: 171 INHLKVFSKQDDKEHQVGDGLYAIHYLG-LKPWM 203
            N LK       +    GD +  +H++G  KPW 
Sbjct: 180 YNALKPLRYLHPEALWFGDEIKVVHFIGGDKPWS 213

Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases. Length = 240
>gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8 Back     alignment and domain information
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 203
PLN00176333 galactinol synthase 100.0
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 100.0
cd06914278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 100.0
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 99.96
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 99.93
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 99.93
PRK15171334 lipopolysaccharide 1,3-galactosyltransferase; Prov 99.92
COG1442325 RfaJ Lipopolysaccharide biosynthesis proteins, LPS 99.91
cd06431280 GT8_LARGE_C LARGE catalytic domain has closest hom 99.89
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 99.86
cd06432248 GT8_HUGT1_C_like The C-terminal domain of HUGT1-li 99.72
cd06430304 GT8_like_2 GT8_like_2 represents a subfamily of GT 99.7
PLN02718603 Probable galacturonosyltransferase 99.66
PLN02523559 galacturonosyltransferase 99.54
COG5597368 Alpha-N-acetylglucosamine transferase [Cell envelo 99.46
PLN02867535 Probable galacturonosyltransferase 99.42
PLN02742534 Probable galacturonosyltransferase 99.3
PLN02659534 Probable galacturonosyltransferase 99.24
PLN02870533 Probable galacturonosyltransferase 99.22
PLN02829639 Probable galacturonosyltransferase 99.15
PLN02769629 Probable galacturonosyltransferase 99.07
PLN02910657 polygalacturonate 4-alpha-galacturonosyltransferas 99.04
KOG1950369 consensus Glycosyl transferase, family 8 - glycoge 98.89
PLN03182429 xyloglucan 6-xylosyltransferase; Provisional 94.95
PF11051271 Mannosyl_trans3: Mannosyltransferase putative; Int 93.0
PLN03181453 glycosyltransferase; Provisional 91.23
PF07801142 DUF1647: Protein of unknown function (DUF1647); In 86.66
PF03407212 Nucleotid_trans: Nucleotide-diphospho-sugar transf 84.37
PF05637239 Glyco_transf_34: galactosyl transferase GMA12/MNN1 83.08
>PLN00176 galactinol synthase Back     alignment and domain information 
Probab=100.00  E-value=2.7e-43  Score=303.05  Aligned_cols=182  Identities=27%  Similarity=0.418  Sum_probs=156.2

Q ss_pred             CCCCCeEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEecccCCC----------
Q 041855           20 TYHQREAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWISRIRSP----------   89 (203)
Q Consensus        20 ~~~~~~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~~i~~p----------   89 (203)
                      ...+++||||+|++|++|++|+++|++||+++++++|++|+++++||+++++.|++.|+.+++|+++.++          
T Consensus        18 ~~~~~~AyVT~L~~n~~Y~~Ga~vL~~SLr~~~s~~~lVvlVt~dVp~e~r~~L~~~g~~V~~V~~i~~~~~~~~~~~~~   97 (333)
T PLN00176         18 AKPAKRAYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEEHRRILVSQGCIVREIEPVYPPENQTQFAMAY   97 (333)
T ss_pred             cccCceEEEEEEecCcchHHHHHHHHHHHHHhCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEecccCCcccccccccch
Confidence            3477899999999999999999999999999999999999999999999999999999999999877532          


Q ss_pred             ----CCccccccccceeEEE--------------EeccCc--cccCCCC-------------------------------
Q 041855           90 ----FAKKDSYNEWNYSKLR--------------FFFYPE--LSAAGND-------------------------------  118 (203)
Q Consensus        90 ----~~k~~~~~l~~Y~rl~--------------Lfd~~~--~aA~~d~-------------------------------  118 (203)
                          ++|+++|.+++|+|++              ||+++.  ++||.|.                               
T Consensus        98 ~~i~~tKl~iw~l~~ydkvlyLDaD~lv~~nid~Lf~~~~~~~aAV~dc~~~~~~~~~p~~~~~~c~~~~~~~~wp~~~g  177 (333)
T PLN00176         98 YVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWPAELG  177 (333)
T ss_pred             hhhhhhhhhhccccccceEEEecCCEEeecChHHHhcCCCcceEEEecccccccccccccccccccccchhhccchhhcc
Confidence                4578899999999997              788753  5555441                               


Q ss_pred             ---cccccccEEEEeCCHHHHHHHHHHhhcCCCCCCChHhHHHHHhh-cCCCCCCcccceeee-ccCCCcccccCCceEE
Q 041855          119 ---KVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFT-WWHRLPKRINHLKVF-SKQDDKEHQVGDGLYA  193 (203)
Q Consensus       119 ---~~yfNsGvmvi~p~~~~~~~l~~~~~~~~~~~~~DQd~LN~~f~-~w~~Lp~~yN~~~~~-~~~~~~~~~~~~~~~I  193 (203)
                         ..||||||||++|+.+++++|++.+...+.+.++|||+||.+|+ +|..||.+||++..+ +.+  ++.+..++++|
T Consensus       178 ~~~~~yFNSGVlvinps~~~~~~ll~~l~~~~~~~f~DQD~LN~~F~~~~~~Lp~~YN~~~~~~~~~--~~~~~~~~vkI  255 (333)
T PLN00176        178 PPPPLYFNAGMFVFEPSLSTYEDLLETLKITPPTPFAEQDFLNMFFRDIYKPIPPVYNLVLAMLWRH--PENVELDKVKV  255 (333)
T ss_pred             CCCCCeEEeEEEEEEcCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCcEEECCchhcCchhhhhhC--hhhcccCCcEE
Confidence               13999999999999999999999988776778999999999998 899999999999743 333  23345678999


Q ss_pred             EEEec--CCCCC
Q 041855          194 IHYLG--LKPWM  203 (203)
Q Consensus       194 IHf~g--~KPW~  203 (203)
                      |||+|  .|||+
T Consensus       256 IHY~~~~~KPW~  267 (333)
T PLN00176        256 VHYCAAGSKPWR  267 (333)
T ss_pred             EEeeCCCCCCCC
Confidence            99996  59995

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>PLN02718 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02523 galacturonosyltransferase Back     alignment and domain information
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02867 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02742 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02659 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02870 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02829 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02769 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>KOG1950 consensus Glycosyl transferase, family 8 - glycogenin [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional Back     alignment and domain information
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose Back     alignment and domain information
>PLN03181 glycosyltransferase; Provisional Back     alignment and domain information
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function Back     alignment and domain information
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [] Back     alignment and domain information
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query203
3q4s_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo 7e-09
1zcv_A 353 Apo Form Of A Mutant Of Glycogenin In Which Asp159 9e-09
3usr_A291 Structure Of Y194f Glycogenin Mutant Truncated At R 1e-08
3usq_A291 Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED 1e-08
3rmw_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m 2e-08
3t7m_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1) Comp 2e-08
3u2t_A284 Crystal Structure Of Human Glycogenin-1 (Gyg1) Comp 2e-08
1ll0_A 339 Crystal Structure Of Rabbit Muscle Glycogenin Lengt 3e-08
1zct_A290 Structure Of Glycogenin Truncated At Residue 270 In 3e-08
3v8y_A291 Structure Of Apo-Glycogenin Truncated At Residue 27 3e-08
3v90_A291 Structure Of T82m Glycogenin Mutant Truncated At Re 3e-08
1ll2_A 333 Crystal Structure Of Rabbit Muscle Glycogenin Compl 3e-08
1zcy_A 353 Apo Form Of A Mutant Of Glycogenin In Which Asp159 4e-08
1zcu_A 353 Apo Form Of The 162s Mutant Of Glycogenin Length = 2e-07
>pdb|3Q4S|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form Length = 263 Back     alignment and structure 
Iteration: 1

 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 43/219 (19%)
Query: 25  EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAA-------- 76
           +A+VT L +++AY  GA+ L  S+ Q  ++R LV+L    +S    + L           
Sbjct: 5   QAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVD 63
Query: 77  ---GWKTKWISRIRSP-----FAKKDSYNEWNYSKLRF--------------FFYPELSA 114
                 +  ++ ++ P       K   ++   YSK  F              F   ELSA
Sbjct: 64  VLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSA 123
Query: 115 AGND--KVLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTWWHRLPKR-- 170
           A +      FNSGV V +PS+  +  L+  + +  S++GGDQG LN  F+ W     R  
Sbjct: 124 APDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKH 183
Query: 171 ------INHLKVFSKQDDKEHQVGDGLYAIHYLG-LKPW 202
                 ++ + +FS     +   G     +H+LG +KPW
Sbjct: 184 LPFIYNLSSISIFSYLPAFK-VFGASAKVVHFLGRVKPW 221
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Asn Length = 353 Back     alignment and structure
>pdb|3USR|A Chain A, Structure Of Y194f Glycogenin Mutant Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|3USQ|A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT RESIDUE 270 Length = 291 Back     alignment and structure
>pdb|3RMW|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant Complexed With Manganese And Udp-Glucose Length = 263 Back     alignment and structure
>pdb|3T7M|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed With Manganese And Udp, In A Triclinic Closed Form Length = 263 Back     alignment and structure
>pdb|3U2T|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed With Manganese Length = 284 Back     alignment and structure
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Length = 339 Back     alignment and structure
>pdb|1ZCT|A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A Complex With Udp Length = 290 Back     alignment and structure
>pdb|3V8Y|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|3V90|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed With Udp- Glucose And Manganese Length = 333 Back     alignment and structure
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Ser Length = 353 Back     alignment and structure
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin Length = 353 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query203
1ll2_A 333 Glycogenin-1; protein-substrate complex, beta-alph 6e-28
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 3e-27
3tzt_A276 Glycosyl transferase family 8; structural genomics 4e-05
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 1e-04
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Length = 333 Back     alignment and structure
 Score =  106 bits (265), Expect = 6e-28
 Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 41/220 (18%)

Query: 24  REAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWI 83
            +A+VT L +++AY  GA+ L  S+ Q  +SR L +L    +S    ++L     +   +
Sbjct: 3   DQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITV 61

Query: 84  SRIRSPFAKKDSYNEW-----NYSKLRF-------------------------FFYPELS 113
             + S  +   +  +        +KL                           F   ELS
Sbjct: 62  DILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELS 121

Query: 114 AAGNDKV--LFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTWWHRLP--K 169
           AA +      FNSGV V +PS+  +  L+  + +  S++GGDQG LN  F  W      K
Sbjct: 122 AAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRK 181

Query: 170 RINHLKVFSKQDDKEH-----QVGDGLYAIHYLG-LKPWM 203
            +  +   S      +       G     +H+LG  KPW 
Sbjct: 182 HLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWN 221
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Length = 263 Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276 Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query203
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 100.0
1ll2_A 333 Glycogenin-1; protein-substrate complex, beta-alph 100.0
3tzt_A276 Glycosyl transferase family 8; structural genomics 99.94
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 99.92
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure
Probab=100.00  E-value=4.7e-42  Score=287.57  Aligned_cols=181  Identities=31%  Similarity=0.470  Sum_probs=156.3

Q ss_pred             CCCeEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEecccCCC------------
Q 041855           22 HQREAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWISRIRSP------------   89 (203)
Q Consensus        22 ~~~~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~~i~~p------------   89 (203)
                      .+++||||++ +|++|++|+++|++||+++|++++++||+++++|++.++.|++.|.+++.|+.++.+            
T Consensus         2 ~~~~AyvTl~-td~~Yl~ga~vL~~SL~~~~s~~~lvvLvt~~vs~~~~~~L~~~~~~vi~V~~l~~~~~~~~~~~~rp~   80 (263)
T 3u2u_A            2 MTDQAFVTLT-TNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTLMKRPE   80 (263)
T ss_dssp             TTTEEEEEEE-SSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHSSEEEECCCCCCCCHHHHHHTTCTT
T ss_pred             CcceEEEEEE-ECHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHHcCCeEEEeeecCCcchhhhhhhcCcc
Confidence            4589999975 799999999999999999999999999999999999999999999999998877542            


Q ss_pred             ----CCccccccccceeEEE--------------EeccCccccCCCCc--ccccccEEEEeCCHHHHHHHHHHhhcCCCC
Q 041855           90 ----FAKKDSYNEWNYSKLR--------------FFFYPELSAAGNDK--VLFNSGVMVIEPSLCKFEDLMLKSFQVSSY  149 (203)
Q Consensus        90 ----~~k~~~~~l~~Y~rl~--------------Lfd~~~~aA~~d~~--~yfNsGvmvi~p~~~~~~~l~~~~~~~~~~  149 (203)
                          ++|+.+|.+++|+|++              ||++++++|+||.+  .|||||||||+|+..+++++++.+.+.+++
T Consensus        81 ~~~~~~kl~~~~l~~~~~vlylD~D~~v~~~~~~Lf~~~~~aA~~d~~~~~~fNsGv~li~p~~~~~~~l~~~~~~~~~~  160 (263)
T 3u2u_A           81 LGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSF  160 (263)
T ss_dssp             GGGGGGGGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCSSEEEECTTSTTSEEEEEEEECCCHHHHHHHHHHHHHHCCT
T ss_pred             hhHHhHHHHhccccCcceEEEEcCCEeeccCHHHHhCCCcceEeccCCCCccccCeEEEEcccHHHHHHHHHHHHhcCCC
Confidence                4578899999999997              88888899999975  699999999999999999999999887789


Q ss_pred             CCChHhHHHHHhhcC------CCCCCcccceeeeccCCCcc-cccCCceEEEEEec-CCCCC
Q 041855          150 NGGDQGFLNEVFTWW------HRLPKRINHLKVFSKQDDKE-HQVGDGLYAIHYLG-LKPWM  203 (203)
Q Consensus       150 ~~~DQd~LN~~f~~w------~~Lp~~yN~~~~~~~~~~~~-~~~~~~~~IIHf~g-~KPW~  203 (203)
                      .++|||+||.+|++|      ..||.+||++........+. .+..++++||||+| .|||+
T Consensus       161 ~~~DQd~LN~~f~~w~~~~~~~~Lp~~yN~~~~~~y~~~~~~~~~~~~~~IIHf~g~~KPW~  222 (263)
T 3u2u_A          161 DGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRVKPWN  222 (263)
T ss_dssp             TSSHHHHHHHHTTTTTTSCGGGBCCGGGSEEHHHHHSSHHHHHHHGGGCSEEECCSSSCGGG
T ss_pred             CcccHHHHHHHhccccccCeeEeCCcccccccchhccccHHHHhhcCCeEEEEECCCCcCCC
Confidence            999999999999865      68999999986421111111 12357899999999 89995
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 203
d1ll2a_263 c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun 2e-22
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 89.2 bits (220), Expect = 2e-22
 Identities = 54/218 (24%), Positives = 85/218 (38%), Gaps = 41/218 (18%)

Query: 25  EAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWIS 84
           +A+VT L +++AY  GA+ L  S+ Q  +SR L +L    +S    ++L     +   + 
Sbjct: 4   QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 62

Query: 85  RIRSPFAKKDSYNEWN-----YSKLR-------------------------FFFYPELSA 114
            + S  +   +  +        +KL                           F   ELSA
Sbjct: 63  ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 122

Query: 115 AGNDK--VLFNSGVMVIEPSLCKFEDLMLKSFQVSSYNGGDQGFLNEVFTW------WHR 166
           A +      FNSGV V +PS+  +  L+  + +  S++GGDQG LN  F           
Sbjct: 123 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 182

Query: 167 LPKRINHLKVFSKQDDKEH-QVGDGLYAIHYLG-LKPW 202
           LP   N   +            G     +H+LG  KPW
Sbjct: 183 LPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPW 220

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query203
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 100.0
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 99.92
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=2.5e-35  Score=243.42  Aligned_cols=180  Identities=31%  Similarity=0.438  Sum_probs=152.0

Q ss_pred             CCeEEEEEeecCcchHHHHHHHHHHHHhhCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEecccCCC-------------
Q 041855           23 QREAYVTILHSSEAYVCGAIALAESIIQKNSSRDLVLLHDKSISGKSLRSLRAAGWKTKWISRIRSP-------------   89 (203)
Q Consensus        23 ~~~AyvT~l~~d~~Y~~~~~vl~~SL~~~~~~~~lvvlv~~~v~~~~~~~L~~~g~~v~~v~~i~~p-------------   89 (203)
                      .+.||||+ ++|++|++|++||++||++++++++++|+++++++++.++.|++.+.+++.++.++.+             
T Consensus         2 ~~~A~vt~-~t~d~Yl~~a~vl~~SL~~~~~~~~~vvl~~~~i~~~~~~~L~~~~~~~~~v~~i~~~~~~~~~~~~~~~~   80 (263)
T d1ll2a_           2 TDQAFVTL-TTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPEL   80 (263)
T ss_dssp             CSEEEEEE-ESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHCGGG
T ss_pred             CccEEEEE-EeCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHhCCcceeEEeecCcchhhhhhhccccc
Confidence            57899998 4799999999999999999999999999999999999999999999999998877643             


Q ss_pred             ---CCccccccccceeEEE--------------EeccCccccCCCCc--ccccccEEEEeCCHHHHHHHHHHhhcCCCCC
Q 041855           90 ---FAKKDSYNEWNYSKLR--------------FFFYPELSAAGNDK--VLFNSGVMVIEPSLCKFEDLMLKSFQVSSYN  150 (203)
Q Consensus        90 ---~~k~~~~~l~~Y~rl~--------------Lfd~~~~aA~~d~~--~yfNsGvmvi~p~~~~~~~l~~~~~~~~~~~  150 (203)
                         +.|+.+|.+.+|+|++              ||+.+.++|+++.+  .+||||||+++|+.+.++.|.+.+.+...+.
T Consensus        81 ~~ty~Kl~i~~l~~ydkvlYLDaD~lv~~~id~Lf~~~~~~a~~~~~~~~~~nsGv~l~~p~~~~~~~i~~~~~~~~~~~  160 (263)
T d1ll2a_          81 GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFD  160 (263)
T ss_dssp             HHHHHHGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCSSEEEECSSSTTSEEEEEEEECCCHHHHHHHHHHHHHTCCTT
T ss_pred             hhhhHHHHHhhhcccceEEEeCCCEEEecCHHHHhcCCccceeccCCCcccccCCcEEECccHHHHHHHHHHHHhhCCCC
Confidence               2466788899999987              88888889988864  6999999999999999999999998888888


Q ss_pred             CChHhHHHHHhh------cCCCCCCcccceeee-ccCCCcccccCCceEEEEEec-CCCCC
Q 041855          151 GGDQGFLNEVFT------WWHRLPKRINHLKVF-SKQDDKEHQVGDGLYAIHYLG-LKPWM  203 (203)
Q Consensus       151 ~~DQd~LN~~f~------~w~~Lp~~yN~~~~~-~~~~~~~~~~~~~~~IIHf~g-~KPW~  203 (203)
                      ++||+++|.+|.      .|..||..||+.... +...........+++||||+| .|||+
T Consensus       161 ~~dq~~ln~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iIHf~g~~KPW~  221 (263)
T d1ll2a_         161 GGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWN  221 (263)
T ss_dssp             SSHHHHHHHHTTTTTTSCGGGBCCGGGSEETTHHHHTHHHHHHHGGGCSEEECCSSCCGGG
T ss_pred             hhhhhHHHHHHHhhhccCcccccCHHHhhhhhhhhhhhHhHHhhcCCeEEEEeCCCCCCCC
Confidence            999999999995      466788888887532 111101123456899999999 79994
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure