Citrus Sinensis ID: 041880

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLCGEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYMVFSIGRPRWLVKMVERDQQKKVRRRRPRHRM
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccEEcccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEccccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccEcHccccccc
Coil and Loop (DISEMBL)
mtalesldlsfnrlhgripeqlLGVTALASLNLSYNrlrgriprgnqfntfdndsyignihlcgepltvtcsndgqpkappsastdheedetpswfdwKMAKLGYASGVVIGLSIGYMVFSIGRPRWLVKMVERDQQKkvrrrrprhrm
Flexible Loop (DISEMBL)
MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLCGEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYMVFSIGRPrwlvkmverdqqkkvrrrrprhrm
Low Complexity Region (SEG)
MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLCGEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYMVFSIGRPRWLVKMVERDQQKKVrrrrprhrM
Disordered region (IsUnstruct)
********LSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLCGEPLTVTC**********************SWFDWKMAKLGYASGVVIGLSIGYMVFSIGRPRWLVKMV*****************
Disordered Region (DISOPRED)
MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLCGEPLT**************************WFDWKMAKLGYASGVVIGLSIGYMVFSIGRPRWLVKMVERDQQKKVR*R******
Disordered Region (DISEMBL)
MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLCGEPLTVTCSN*******************PSWFDWKMAKLGYASGVVIGLSIGYMVFSIGRPRWLVKMVE****************
Disordered Region (DISPRO)
*TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLCGEPLTVTC**********************SWFDWKMAKLGYASGVVIGLSIGYMVFSIGRPRWLVKMVERDQQKK**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLCGEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYMVFSIGRPRWLVKMVERDQQKKVRRRRPRHRM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.912	0.160	0.335	2e-14
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.395	0.057	0.523	4e-12
Q9ZVR7	1008	Phytosulfokine receptor 1	no	no	0.429	0.063	0.538	2e-11
Q9FN37	1036	Phytosulfokine receptor 2	no	no	0.818	0.117	0.335	2e-10
A7PW81	333	Polygalacturonase inhibit	no	no	0.429	0.192	0.507	2e-10
Q00874	372	DNA-damage-repair/tolerat	no	no	0.469	0.188	0.471	2e-10
Q9C7S5	1095	Tyrosine-sulfated glycope	no	no	0.469	0.063	0.478	3e-10
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.422	0.050	0.476	6e-10
C0LGF4	591	LRR receptor-like serine/	no	no	0.530	0.133	0.387	2e-09
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.516	0.063	0.409	3e-09

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 4/140 (2%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
           +T LE+LD+S N+L G+IP+ L  ++ L+ +N S+N L+G +PRG QF      S++ N 
Sbjct: 705 LTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNP 764

Query: 61  HLCGEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYMVF 120
            L G  L   C + G          D  E E  + F+W  A + Y  GV+ GL IG+  +
Sbjct: 765 GLYG--LEDICRDTGALNPTSQLPEDLSEAEE-NMFNWVAAAIAYGPGVLCGLVIGHF-Y 820

Query: 121 SIGRPRWLVKMVERDQQKKV 140
           +     W  +   R Q K +
Sbjct: 821 TSHNHEWFTEKFGRKQHKAL 840

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 45/65 (69%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
           MT+LE LDLS N L G IP  L+ ++ L++ +++YN+L G IP G QF TF N S+ GN 
Sbjct: 580 MTSLEVLDLSHNNLSGNIPPSLVKLSFLSTFSVAYNKLSGPIPTGVQFQTFPNSSFEGNQ 639

Query: 61  HLCGE 65
            LCGE
Sbjct: 640 GLCGE 644

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
           MT+LE+LDLS NRL G IP  L  ++ L+  +++YN L G IP G QF TF N S+  N 
Sbjct: 570 MTSLEALDLSNNRLSGSIPVSLQQLSFLSKFSVAYNNLSGVIPSGGQFQTFPNSSFESN- 628

Query: 61  HLCGE 65
           HLCGE
Sbjct: 629 HLCGE 633

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FN37|PSKR2_ARATH Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 21/143 (14%)

Query: 4   LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLC 63
           LE LDLS+N L+G IP     +T L+  +++YNRL G IP G QF +F + S+ GN+ LC
Sbjct: 586 LEVLDLSYNHLYGSIPLSFQSLTFLSRFSVAYNRLTGAIPSGGQFYSFPHSSFEGNLGLC 645

Query: 64  ---GEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYMVF 120
                P  V  SN   PK     + +               K G +S VV+ +S+     
Sbjct: 646 RAIDSPCDVLMSNMLNPKGSSRRNNNG-------------GKFGRSSIVVLTISL----- 687

Query: 121 SIGRPRWLVKMVERDQQKKVRRR 143
           +IG    L  ++ R  +K V  R
Sbjct: 688 AIGITLLLSVILLRISRKDVDDR 710

Phytosulfokine receptor with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|A7PW81|PGIP_VITVI Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 3   ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHL 62
           +L SLDLS N++ G +PE +  +  L  LN+SYNRL G+IP G +  +FD DSY  N  L
Sbjct: 266 SLTSLDLSHNKIAGSLPEMMTSLD-LQFLNVSYNRLCGKIPVGGKLQSFDYDSYFHNRCL 324

Query: 63  CGEPL 67
           CG PL
Sbjct: 325 CGAPL 329

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi.

Vitis vinifera (taxid: 29760)

>sp|Q00874|DR100_ARATH DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 43/70 (61%)

Query: 2   TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIH 61
           T L SLDLS N L GRIP+ L     +  L++S+N+L GRIP G  F+  +  S+  N  
Sbjct: 303 TYLVSLDLSHNSLSGRIPDSLSSAKFVGHLDISHNKLCGRIPTGFPFDHLEATSFSDNQC 362

Query: 62  LCGEPLTVTC 71
           LCG PLT +C
Sbjct: 363 LCGGPLTTSC 372

This protein is able to complement bacterial recA mutations, but its native function in the plant is not known.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 43/71 (60%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
           +T LE LDLS N L GRIP  L G+  L+  N++ N L G IP G QF+TF   ++ GN 
Sbjct: 628 LTNLERLDLSNNNLSGRIPWSLTGLHFLSYFNVANNTLSGPIPTGTQFDTFPKANFEGNP 687

Query: 61  HLCGEPLTVTC 71
            LCG  L  +C
Sbjct: 688 LLCGGVLLTSC 698

Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity. Regulates, in response to tyrosine-sulfated glycopeptide binding, a signaling cascade involved in cellular proliferation and plant growth. Not involved in PSK perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 2/65 (3%)

Query: 4   LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLC 63
           LESLDLS N+L G +P Q+  + +L  LNLSYN L G++ +  QF+ +  D+++GN  LC
Sbjct: 795 LESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKK--QFSRWQADAFVGNAGLC 852

Query: 64  GEPLT 68
           G PL+
Sbjct: 853 GSPLS 857

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGF4|FEI1_ARATH LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
           +  L+ LD+S N L G IP  L  +  L++ N+S N L G+IP     + F  +S+IGN+
Sbjct: 145 LPGLQKLDMSSNTLSGPIPASLGQLKKLSNFNVSNNFLVGQIPSDGVLSGFSKNSFIGNL 204

Query: 61  HLCGEPLTVTCSND-GQPKA 79
           +LCG+ + V C +D G P +
Sbjct: 205 NLCGKHVDVVCQDDSGNPSS 224

Involved in the signaling pathway that regulates cell wall function, including cellulose biosynthesis, likely via an 1-aminocyclopropane-1-carboxylic acid (ACC)-mediated signal (a precursor of ethylene).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 45/83 (54%), Gaps = 6/83 (7%)

Query: 7   LDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLCGEP 66
           LDLS+NR +G IP  L  +T L  ++LS N L G IP    F+TF  D    N  LCG P
Sbjct: 716 LDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDTFP-DYRFANNSLCGYP 774

Query: 67  LTVTCSNDGQPKAPPSASTDHEE 89
           L + CS+      P S +  H++
Sbjct: 775 LPIPCSS-----GPKSDANQHQK 792

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
224116970	921	predicted protein [Populus trichocarpa]	0.959	0.155	0.557	2e-40
255568090	1014	serine/threonine-protein kinase bri1, pu	0.912	0.134	0.510	9e-36
224111710	1176	predicted protein [Populus trichocarpa]	0.979	0.124	0.509	7e-35
297736159	149	unnamed protein product [Vitis vinifera]	0.906	0.906	0.528	3e-34
224152304	242	predicted protein [Populus trichocarpa]	0.979	0.603	0.496	3e-33
147826872	751	hypothetical protein VITISV_000530 [Viti	0.906	0.179	0.521	4e-33
296082718	745	unnamed protein product [Vitis vinifera]	0.906	0.181	0.514	1e-32
225462116	1001	PREDICTED: receptor-like protein 12-like	0.906	0.134	0.514	1e-32
224099469	897	predicted protein [Populus trichocarpa]	0.959	0.159	0.493	1e-31
356561450	813	PREDICTED: receptor-like protein 12-like	0.939	0.172	0.510	2e-31

>gi|224116970|ref|XP_002331797.1| predicted protein [Populus trichocarpa] gi|222874493|gb|EEF11624.1| predicted protein [Populus trichocarpa]

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/147 (55%), Positives = 107/147 (72%), Gaps = 4/147 (2%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
           +TALESLDLS N L G IP QL  +T LA LNLSYN+L G IP G+QF+TF NDSY+GN+
Sbjct: 778 LTALESLDLSSNGLGGGIPSQLTRLTFLAVLNLSYNQLVGPIPHGSQFDTFQNDSYVGNL 837

Query: 61  HLCGEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYMVF 120
            LCG PL+V CS D  P+ PP      E+++  S F+WK A +GY  G+VIGLS+GY+VF
Sbjct: 838 RLCGFPLSVKCSGDVAPQPPPF----QEKEDPASLFNWKFAMIGYGCGLVIGLSVGYIVF 893

Query: 121 SIGRPRWLVKMVERDQQKKVRRRRPRH 147
           + G+P+W V+ VE +Q+K +RRR  R+
Sbjct: 894 TTGKPQWFVRKVEVEQKKWLRRRTKRN 920

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568090|ref|XP_002525021.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223535683|gb|EEF37348.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 70/137 (51%), Positives = 100/137 (72%), Gaps = 1/137 (0%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
           +T +ESLDLS N+L G IP QL  ++ LA LNL++N+L+G+IP+G QFNTF NDSY+GN+
Sbjct: 862 LTNMESLDLSSNKLVGEIPSQLTLLSFLAVLNLTFNQLKGQIPQGKQFNTFANDSYVGNL 921

Query: 61  HLCGEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYMVF 120
            LCG PL+  CS+   P+  PS    HEE+++  WFDWK A +GY  G+V GLS+GY+V 
Sbjct: 922 GLCGFPLSQKCSSGEPPQLSPSP-IPHEEEDSQGWFDWKFALMGYGCGMVFGLSMGYIVL 980

Query: 121 SIGRPRWLVKMVERDQQ 137
           +  +P+W+V+++E  Q 
Sbjct: 981 ATRKPQWIVRIIEERQH 997

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111710|ref|XP_002332892.1| predicted protein [Populus trichocarpa] gi|222833737|gb|EEE72214.1| predicted protein [Populus trichocarpa]

 Score =  151 bits (382), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 77/151 (50%), Positives = 96/151 (63%), Gaps = 5/151 (3%)

Query: 1    MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
            +T LESLDLS N L GRIP QL+ +T L  LNLSYN+L G IP+G QFNTF+N SY GN+
Sbjct: 1022 LTNLESLDLSSNLLAGRIPPQLVDLTFLQVLNLSYNQLEGPIPQGKQFNTFENGSYEGNL 1081

Query: 61   HLCGEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYMVF 120
             LCG PL V C N G+ + PP ++ + E+      F WK   +GY  G V G+SIGY+VF
Sbjct: 1082 GLCGLPLQVKC-NKGEGQQPPPSNFEKEDSMFEEGFGWKAVAMGYGCGFVFGVSIGYVVF 1140

Query: 121  SIGRPRWLVKMVERDQQKKVRRRR----PRH 147
               +P W VKMVE    +  +R R    PRH
Sbjct: 1141 RARKPAWFVKMVEDSAHQNAKRLRRKNAPRH 1171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736159|emb|CBI24197.3| unnamed protein product [Vitis vinifera]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 74/140 (52%), Positives = 95/140 (67%), Gaps = 5/140 (3%)

Query: 3   ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHL 62
            LESLDLS N+L GRIP +L  +T L  LNLS N L G IPRGNQF++F N+SY GNI L
Sbjct: 2   VLESLDLSSNKLSGRIPRELTSLTFLEVLNLSKNHLTGVIPRGNQFDSFTNNSYSGNIGL 61

Query: 63  CGEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYMVFSI 122
           CG PL+  C  D  P+ P       EE E+ + FDWK+  +GY  G+V+GLSIG +VF  
Sbjct: 62  CGFPLSKKCVVDEAPQPP-----KEEEVESDTGFDWKVILMGYGCGLVVGLSIGCLVFLT 116

Query: 123 GRPRWLVKMVERDQQKKVRR 142
            +P+W V+M+E D+ KKVR+
Sbjct: 117 RKPKWFVRMIEGDRHKKVRK 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224152304|ref|XP_002337217.1| predicted protein [Populus trichocarpa] gi|222838492|gb|EEE76857.1| predicted protein [Populus trichocarpa]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 73/147 (49%), Positives = 95/147 (64%), Gaps = 1/147 (0%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
           +T LESLDLS N L GRIP QL+ +T L  LNLSYN L G IP+G QF+TF+N SY GN+
Sbjct: 87  LTNLESLDLSSNLLAGRIPPQLVDLTFLQVLNLSYNHLEGPIPQGKQFSTFENGSYEGNL 146

Query: 61  HLCGEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYMVF 120
            LCG PL V C N+G+ + PP ++ + E+      F WK   +GY  G V G+SIGY+VF
Sbjct: 147 GLCGLPLQVKC-NEGEGQQPPPSNFEKEDSMFEEGFGWKAVAMGYGCGFVFGVSIGYVVF 205

Query: 121 SIGRPRWLVKMVERDQQKKVRRRRPRH 147
              +P W VKMVE    +  +R R ++
Sbjct: 206 RARKPAWFVKMVEASAHQYGKRLRRKN 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147826872|emb|CAN73268.1| hypothetical protein VITISV_000530 [Vitis vinifera]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/140 (52%), Positives = 93/140 (66%), Gaps = 5/140 (3%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
           +  LESLDLS N+L GRIP +L  +T L  LNLS N L G IPRGNQF+TF N+SY GNI
Sbjct: 602 LMVLESLDLSSNKLSGRIPRELTSLTFLEVLNLSKNHLTGVIPRGNQFDTFANNSYSGNI 661

Query: 61  HLCGEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYMVF 120
            LCG PL+  C  D  P+ P       EE E+ + FDWK+  +GY  G+V+GL +G +VF
Sbjct: 662 GLCGFPLSKKCVVDEAPQPP-----KEEEVESDTGFDWKVILMGYGCGLVVGLFMGCLVF 716

Query: 121 SIGRPRWLVKMVERDQQKKV 140
              +P+WLV M+E D+ KKV
Sbjct: 717 LTRKPKWLVTMIEGDRHKKV 736

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082718|emb|CBI21723.3| unnamed protein product [Vitis vinifera]

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/140 (51%), Positives = 92/140 (65%), Gaps = 5/140 (3%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
           +  LESLDLS N+L GRIP +L  +T L  LNLS N L G IPRGNQF+TF N+SY GNI
Sbjct: 596 LMVLESLDLSSNKLSGRIPRELTSLTFLEVLNLSKNHLTGVIPRGNQFDTFANNSYSGNI 655

Query: 61  HLCGEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYMVF 120
            LCG PL+  C  D  P+ P       EE E+ + FDWK+  +GY  G+V+GL +G +VF
Sbjct: 656 GLCGLPLSKKCVVDEAPQPP-----KEEEVESDTGFDWKVILMGYGCGLVVGLFMGCLVF 710

Query: 121 SIGRPRWLVKMVERDQQKKV 140
              +P+W V M+E D+ KKV
Sbjct: 711 LTRKPKWFVTMIEGDRHKKV 730

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462116|ref|XP_002263233.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/140 (51%), Positives = 92/140 (65%), Gaps = 5/140 (3%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
           +  LESLDLS N+L GRIP +L  +T L  LNLS N L G IPRGNQF+TF N+SY GNI
Sbjct: 852 LMVLESLDLSSNKLSGRIPRELTSLTFLEVLNLSKNHLTGVIPRGNQFDTFANNSYSGNI 911

Query: 61  HLCGEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYMVF 120
            LCG PL+  C  D  P+ P       EE E+ + FDWK+  +GY  G+V+GL +G +VF
Sbjct: 912 GLCGLPLSKKCVVDEAPQPP-----KEEEVESDTGFDWKVILMGYGCGLVVGLFMGCLVF 966

Query: 121 SIGRPRWLVKMVERDQQKKV 140
              +P+W V M+E D+ KKV
Sbjct: 967 LTRKPKWFVTMIEGDRHKKV 986

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099469|ref|XP_002334479.1| predicted protein [Populus trichocarpa] gi|222872406|gb|EEF09537.1| predicted protein [Populus trichocarpa]

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 71/144 (49%), Positives = 91/144 (63%), Gaps = 1/144 (0%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
           +T LESLDLS N L GRIP++L+ +T L  LNLSYN+L G IP G QFNTF+N SY GN+
Sbjct: 743 LTNLESLDLSSNLLAGRIPQELVDLTFLQVLNLSYNQLEGPIPLGKQFNTFENGSYEGNL 802

Query: 61  HLCGEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYMVF 120
            LCG PL V C N G+ + PP ++ + E+      F WK   +GY  G V G+SIGY+VF
Sbjct: 803 GLCGFPLQVKC-NKGEGQQPPPSNFEKEDSMFGEGFGWKAVTMGYGCGFVFGVSIGYVVF 861

Query: 121 SIGRPRWLVKMVERDQQKKVRRRR 144
              +  W V MVE    +  +R R
Sbjct: 862 RARKAAWFVNMVEDSAHQYGKRLR 885

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561450|ref|XP_003548994.1| PREDICTED: receptor-like protein 12-like [Glycine max]

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/143 (51%), Positives = 88/143 (61%), Gaps = 3/143 (2%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
           +T LESLDLS N L GRIP +L  +  L  LNLS N L G IPRG QFNTF NDSY GN+
Sbjct: 661 LTNLESLDLSSNMLTGRIPTELTNLNFLEVLNLSNNHLAGEIPRGQQFNTFSNDSYKGNL 720

Query: 61  HLCGEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYMVF 120
            LCG PLT  CS   +  +PPS +      E    F WK   +GY  GVV G+ +G  V 
Sbjct: 721 GLCGLPLTTECSKGPEQHSPPSTTL---RREAGFGFGWKPVAIGYGCGVVFGVGMGCCVL 777

Query: 121 SIGRPRWLVKMVERDQQKKVRRR 143
            IG+P+WLV+MV     KKV+R+
Sbjct: 778 LIGKPQWLVRMVGGKLNKKVKRK 800

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
TAIR|locus:2046500	218	RLP25 "receptor like protein 2	0.885	0.605	0.377	1.2e-19
TAIR|locus:2829370	915	RLP40 "receptor like protein 4	0.845	0.137	0.407	1.4e-19
TAIR|locus:2086979	890	RLP42 "receptor like protein 4	0.852	0.142	0.412	1.7e-19
TAIR|locus:2046600	800	RLP26 "receptor like protein 2	0.906	0.168	0.378	1.8e-19
TAIR|locus:2046397	589	RLP22 "receptor like protein 2	0.825	0.208	0.4	2.2e-19
TAIR|locus:2046357	890	RLP23 "receptor like protein 2	0.906	0.151	0.368	3.6e-19
TAIR|locus:2087253	884	RLP39 "AT3G24900" [Arabidopsis	0.838	0.141	0.396	4.6e-19
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.879	0.162	0.388	5.1e-19
TAIR|locus:2046515	864	RLP24 "receptor like protein 2	0.832	0.143	0.387	7.2e-19
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.825	0.140	0.403	9.4e-19

TAIR|locus:2046500 RLP25 "receptor like protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 51/135 (37%), Positives = 76/135 (56%)

Query:     4 LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLC 63
             LESLD+S N L G IP+ L  ++ L  +N+S+N+L+G IP+G Q       S+ GN  LC
Sbjct:    85 LESLDMSRNGLSGTIPQGLKTLSFLGYINVSHNQLKGEIPQGTQITGPPKSSFEGNAGLC 144

Query:    64 GEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYMVFSIG 123
             G PL  +C     P    S   D++ED      +WK    GY  GV  GL+I  ++ S  
Sbjct:   145 GLPLEESCFGTKVPPIQQSKKEDNQEDAKV--LNWKAVATGYGPGVFFGLAIAQIIASY- 201

Query:   124 RPRWLVKMVERDQQK 138
             +P WLVK++  ++++
Sbjct:   202 KPEWLVKIIGPNKRR 216

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2829370 RLP40 "receptor like protein 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 53/130 (40%), Positives = 76/130 (58%)

Query:     4 LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLC 63
             +ESLDLS N+L G IP  L  ++ LA +N+S+N+L G IP+G Q       S+ GN  LC
Sbjct:   783 MESLDLSSNQLSGTIPNGLRTLSFLAYVNVSHNQLIGEIPQGTQITGQPKSSFEGNAGLC 842

Query:    64 GEPLTVTCSNDGQPKAP-PSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYMVFSI 122
             G PL  +C     P A  P    + EEDE     +WK   +GY  GV++GL+I  ++ S+
Sbjct:   843 GFPLQESCFGTNTPPAQHPKEQEEEEEDEQV--LNWKAVAIGYGIGVLLGLAIAQLI-SL 899

Query:   123 GRPRWLVKMV 132
              +P+WL  +V
Sbjct:   900 YKPKWLASLV 909

GO:0009507 "chloroplast" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2086979 RLP42 "receptor like protein 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.7e-19, P = 1.7e-19
 Identities = 54/131 (41%), Positives = 76/131 (58%)

Query:     4 LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLC 63
             +ESLDLS N+L G IP  L  ++ LA +N+S+N+L G IP+G Q       S+ GN  LC
Sbjct:   750 IESLDLSSNQLSGTIPNGLGTLSFLAYMNVSHNQLNGEIPQGTQITGQPKSSFEGNAGLC 809

Query:    64 GEPLTVTCSNDGQPKAP-PSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYMVFSI 122
             G PL  +C     P A  P    + EEDE     +WK   +GY  GV++GL+I  ++ S 
Sbjct:   810 GFPLQESCFGTNAPPAQKPKEEEEAEEDEQE--LNWKAVAIGYGVGVLLGLAIAQLIASY 867

Query:   123 GRPRWLVKMVE 133
              +P WLV +V+
Sbjct:   868 -KPEWLVCLVK 877

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046600 RLP26 "receptor like protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.8e-19, P = 1.8e-19
 Identities = 53/140 (37%), Positives = 85/140 (60%)

Query:     1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
             +T LESLDLS N+L G IP +L  ++ LA +++++N+L+G IP+G QF+     S+ GN+
Sbjct:   639 VTELESLDLSRNQLSGNIPRELGSLSFLAYISVAHNQLKGEIPQGPQFSGQAESSFEGNV 698

Query:    61 HLCGEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYMVF 120
              LCG PL  +C      K P     + EEDE     +WK    GY  G+++GL + +++ 
Sbjct:   699 GLCGLPLQGSCVAP-PTKYPKEEDEEEEEDEV---IEWKAVFFGYWPGLLLGLVMAHVIA 754

Query:   121 SIGRPRWLVKMVERDQQKKV 140
             S  +P+W VK++   + K+V
Sbjct:   755 SF-KPKWFVKILGPAKGKQV 773

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046397 RLP22 "receptor like protein 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.2e-19, P = 2.2e-19
 Identities = 52/130 (40%), Positives = 79/130 (60%)

Query:     1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
             +T LESLDLS N+L G IP++L  ++ LA +++S N+L G+IP+G Q       S+ GN 
Sbjct:   454 VTELESLDLSGNKLSGEIPQELGRLSYLAYIDVSDNQLTGKIPQGTQIIGQPKSSFEGNS 513

Query:    61 HLCGEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYMVF 120
              LCG PL  +C  +  P      ST   E+E     +W+ A +GY  GV+ GL+IG++V 
Sbjct:   514 GLCGLPLEESCLREDAP------STQEPEEEEEEILEWRAAAIGYGPGVLFGLAIGHVV- 566

Query:   121 SIGRPRWLVK 130
             ++ +P W +K
Sbjct:   567 ALYKPGWFIK 576

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046357 RLP23 "receptor like protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 3.6e-19, P = 3.6e-19
 Identities = 52/141 (36%), Positives = 81/141 (57%)

Query:     4 LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLC 63
             LESLD+S N+L G IP  L  ++ LA +N+S+N+L G IP+G Q       S+ GN  LC
Sbjct:   750 LESLDMSRNQLSGTIPNGLGSISFLAYINVSHNQLTGEIPQGTQITGQSKSSFEGNAGLC 809

Query:    64 GEPLTVTCSNDGQP-----KAPPSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYM 118
             G PL  +C   G P     K       + EE+E     + +   +GY SG+++GL+I  +
Sbjct:   810 GLPLKESCFGTGAPPMYHQKQEDKEEEEEEEEEEEEVLNGRAVAIGYGSGLLLGLAIAQV 869

Query:   119 VFSIGRPRWLVKMVERDQQKK 139
             + S  +P WLVK++  ++++K
Sbjct:   870 IASY-KPEWLVKIIGLNKRRK 889

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2087253 RLP39 "AT3G24900" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 4.6e-19, P = 4.6e-19
 Identities = 50/126 (39%), Positives = 72/126 (57%)

Query:     4 LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLC 63
             +ESLDLS N+L G IP  +  ++ LA +N+S+N+L G IP+G Q       S+ GN  LC
Sbjct:   752 IESLDLSSNQLSGTIPNGIGTLSFLAYMNVSHNQLNGEIPQGTQITGQPKSSFEGNAGLC 811

Query:    64 GEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYMVFSIG 123
             G PL  +C     P A      + EE+E     +WK   +GY  GV++GL+I  ++ S  
Sbjct:   812 GLPLQESCFGTNAPPAQHPKEEEEEEEEEEQVLNWKGVGIGYGVGVLLGLAIAQLIASY- 870

Query:   124 RPRWLV 129
             +P WLV
Sbjct:   871 KPEWLV 876

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 54/139 (38%), Positives = 84/139 (60%)

Query:     1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
             +T LESLDLS N+L G IP  L  ++ LA +++++N+L G IP+G Q       S+ GN 
Sbjct:   649 VTELESLDLSRNQLSGTIPNGLKTLSFLAYISVAHNQLIGEIPQGTQITGQSKSSFEGNA 708

Query:    61 HLCGEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYMVF 120
              LCG PL  +C       APP+     EEDE     +WK   +GY  G+++GL + +++ 
Sbjct:   709 GLCGLPLQGSCF------APPTPQPK-EEDEDEEVLNWKAVVIGYWPGLLLGLIMAHVIA 761

Query:   121 SIGRPRWLVKMVERDQQKK 139
             S  +P+WLVK+V  +++K+
Sbjct:   762 SF-KPKWLVKIVGPEKRKE 779

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046515 RLP24 "receptor like protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 7.2e-19, P = 7.2e-19
 Identities = 50/129 (38%), Positives = 76/129 (58%)

Query:     4 LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLC 63
             LESLD+S N+L G IP  L  ++ L  +++++N+L+G IP+G Q       S+ GN  LC
Sbjct:   739 LESLDMSGNQLSGTIPNGLGSLSFLVYISVAHNKLKGEIPQGTQITGQIKSSFEGNAGLC 798

Query:    64 GEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYMVFSIG 123
             G PL  TC +   P   P    D E+ E     +WK   +GYA G++ GL+I +++ S  
Sbjct:   799 GLPLQETCFDSSVPPIQPKQE-DEEKGEV---INWKAVAIGYAPGLLFGLAIAHLIASY- 853

Query:   124 RPRWLVKMV 132
             +P WLVK++
Sbjct:   854 KPEWLVKII 862

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 9.4e-19, P = 9.4e-19
 Identities = 52/129 (40%), Positives = 78/129 (60%)

Query:     4 LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLC 63
             LESLD+S N+L G IP++L  ++ LA +N S+N+L G++P G QF T    S+  N+ LC
Sbjct:   737 LESLDVSRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVPGGTQFRTQSASSFEENLGLC 796

Query:    64 GEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYMVFSIG 123
             G PL   C    +P  P   S   E ++  SW     A +G+  G+V+GL+IG++V S  
Sbjct:   797 GRPLE-ECRVVHEP-TPSGESETLESEQVLSWI---AAAIGFTPGIVLGLTIGHIVLS-S 850

Query:   124 RPRWLVKMV 132
             +PRW  K++
Sbjct:   851 KPRWFFKVL 859

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_182000003 hypothetical protein (921 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	149
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.004
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.6 bits (147), Expect = 1e-11
 Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 10/79 (12%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP--------RGNQFNTFD 52
           +T+LE LDLS+N  +G IPE L  +T+L  LNL+ N L GR+P            FN  D
Sbjct: 465 ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524

Query: 53  NDSYIG--NIHLCGEPLTV 69
           N    G   +  CG  L+V
Sbjct: 525 NAGLCGIPGLRACGPHLSV 543

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 60.2 bits (146), Expect = 2e-11
 Identities = 44/135 (32%), Positives = 59/135 (43%), Gaps = 14/135 (10%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
           M  L  LDLS N+L G IP+ L  V +L  +N+S+N L G +P    F   +  +  GNI
Sbjct: 546 MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNI 605

Query: 61  HLCGEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDWKMAKLGYASGVVIGLSIGYMVF 120
            LCG         D     PP         +TPSW  W        + +V+ L     VF
Sbjct: 606 DLCGG--------DTTSGLPPCKRV----RKTPSW--WFYITCTLGAFLVLALVAFGFVF 651

Query: 121 SIGRPRWLVKMVERD 135
             GR    +K VE +
Sbjct: 652 IRGRNNLELKRVENE 666

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 4   LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
           L+S++LS N + G IP  L  +T+L  L+LSYN   G IP
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 20/40 (50%), Positives = 27/40 (67%)

Query: 4   LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
           L  L LS N+L G IP++L     L SL+LS+N+L G+IP
Sbjct: 501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 4   LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44
           LE+LDLS N+  G +P +L  ++ L  L LS N+L G IP 
Sbjct: 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD 517

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.0 bits (96), Expect = 9e-05
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
           M +L+ + L +N L G IP ++ G+T+L  L+L YN L G IP
Sbjct: 211 MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP 253

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 19/45 (42%), Positives = 25/45 (55%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45
           +  L SLDLS N L G IPE ++ +  L  L+L  N   G+IP  
Sbjct: 283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 4   LESLDLSFNRLHGRIPEQLLGVT-ALASLNLSYNRLRGRIPRGNQFN--TFD--NDSYIG 58
           +++++LS N+L G IP+ +   + +L  LNLS N   G IPRG+  N  T D  N+   G
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG 154

Query: 59  NI 60
            I
Sbjct: 155 EI 156

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45
           M +L+ L L+ N+  G +P    G   L +L+LS N+  G +PR 
Sbjct: 451 MPSLQMLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRK 494

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 5e-04
 Identities = 17/38 (44%), Positives = 22/38 (57%)

Query: 1  MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRL 38
          +  L+ LDLS N L    PE   G+ +L SL+LS N L
Sbjct: 23 LPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 38.3 bits (89), Expect = 7e-04
 Identities = 18/43 (41%), Positives = 24/43 (55%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
           +  L+ L L  N+L G IP  +  +  L SL+LS N L G IP
Sbjct: 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 36.4 bits (84), Expect = 0.003
 Identities = 19/43 (44%), Positives = 24/43 (55%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
           +T+L  LDL +N L G IP  L  +  L  L L  N+L G IP
Sbjct: 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 36.0 bits (83), Expect = 0.004
 Identities = 20/43 (46%), Positives = 29/43 (67%)

Query: 2   TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44
           ++L+ LDL  N L G+IP  L  +T+L  L L+ N+L G+IPR
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR 206

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 33.7 bits (78), Expect = 0.004
 Identities = 16/36 (44%), Positives = 19/36 (52%)

Query: 4  LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLR 39
          L+SLDLS NRL         G+  L  L+LS N L 
Sbjct: 2  LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT 37

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
PLN03150	623	hypothetical protein; Provisional	99.35
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.26
PLN03150	623	hypothetical protein; Provisional	98.79
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.63
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.4
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.91
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.82
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.48
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.99
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.5
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.27
PLN03210	1153	Resistant to P. syringae 6; Provisional	96.13
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	95.95
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	95.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	95.49
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	95.48
PLN03210	1153	Resistant to P. syringae 6; Provisional	95.4
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.33
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	95.2
KOG0617	264	consensus Ras suppressor protein (contains leucine	94.86
smart00370	26	LRR Leucine-rich repeats, outliers.	94.83
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.83
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	94.75
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	94.31
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	93.89
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.61
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	93.52
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.42
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	93.36
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	93.04
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	92.86
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	92.32
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	91.97
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	91.54
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	91.43
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	90.31
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	90.17
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	90.13
KOG4237	498	consensus Extracellular matrix protein slit, conta	90.06
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	90.04
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	89.37
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	89.2
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	88.42
KOG2982	418	consensus Uncharacterized conserved protein [Funct	87.95
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	87.93
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	87.37
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	87.19
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	86.67
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	86.59
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	85.79
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	84.48
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	83.95

>PLN03150 hypothetical protein; Provisional

Probab=99.35  E-value=2.5e-12  Score=109.76  Aligned_cols=70  Identities=41%  Similarity=0.612  Sum_probs=45.0

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCc--ccCCCccccccccCccCCCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQ--FNTFDNDSYIGNIHLCGEPLTVTC   71 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~--~~~~~~~~~~gn~~lcg~~~~~~c   71 (149)
                      +.|+.|||++|+|+|.+|..++++++|+.|+|++|+|+|.+|....  +.......+.+|+.+|+.+....|
T Consensus       466 ~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C  537 (623)
T PLN03150        466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC  537 (623)
T ss_pred             CCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence            4566677777777777777777777777777777777777775422  122234557788888876543444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.26  E-value=1.1e-11  Score=109.93  Aligned_cols=66  Identities=41%  Similarity=0.683  Sum_probs=57.2

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccccCccCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLCGEP   66 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~lcg~~   66 (149)
                      +++|+.|||++|+++|.+|..+..+++|+.+++++|+++|.+|...++..+....+.||+.+||.+
T Consensus       546 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        546 MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             cccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            467888888888888888888888888999999999999999988888888888899999999854

>PLN03150 hypothetical protein; Provisional

Probab=98.79  E-value=3.3e-08  Score=84.68  Aligned_cols=59  Identities=37%  Similarity=0.580  Sum_probs=47.1

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCC-cccCCCccccccc
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN-QFNTFDNDSYIGN   59 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   59 (149)
                      |++|+.|||++|+|+|.+|..++.++.|+.|||++|+|+|.+|... .+..+....+.+|
T Consensus       441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N  500 (623)
T PLN03150        441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN  500 (623)
T ss_pred             CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence            4678999999999999999999999999999999999999999742 2334444445555

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.63  E-value=2.2e-07  Score=82.64  Aligned_cols=60  Identities=35%  Similarity=0.487  Sum_probs=40.6

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCc-ccCCCccccccccC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQ-FNTFDNDSYIGNIH   61 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~-~~~~~~~~~~gn~~   61 (149)
                      ++|+.|||++|.++|.+|..+..+++|+.|++++|+++|.+|.... +..+....+.+|..
T Consensus       523 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l  583 (968)
T PLN00113        523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL  583 (968)
T ss_pred             cCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence            5677777777777777777777778888888888888887776421 22333444555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.40  E-value=2.6e-07  Score=52.32  Aligned_cols=37  Identities=41%  Similarity=0.595  Sum_probs=32.9

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLR   39 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~   39 (149)
                      ++|++|++++|+++ .||..+.+|+.|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            57999999999999 79998999999999999999987

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.91  E-value=8.9e-06  Score=48.74  Aligned_cols=43  Identities=40%  Similarity=0.507  Sum_probs=35.9

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      ++|+.|++++|+|+.--+..+..++.|++|++++|++...-|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~   43 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPD   43 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETT
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHH
Confidence            5799999999999944446788999999999999999755444

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.82  E-value=1.4e-05  Score=47.89  Aligned_cols=38  Identities=39%  Similarity=0.521  Sum_probs=34.3

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRL   38 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l   38 (149)
                      +++|++||+++|.++.--|..+..++.|++|++++|++
T Consensus        24 l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen   24 LPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             GTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46899999999999977777899999999999999975

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.48  E-value=4e-05  Score=36.78  Aligned_cols=21  Identities=48%  Similarity=0.556  Sum_probs=17.1

Q ss_pred             CccEEeCCCCcCceeCCcchhc
Q 041880            3 ALESLDLSFNRLHGRIPEQLLG   24 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP~~l~~   24 (149)
                      +|++|||++|+|+ .||+++++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4788999999988 88887654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.99  E-value=0.00041  Score=56.69  Aligned_cols=58  Identities=24%  Similarity=0.300  Sum_probs=47.9

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCcccccccc
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI   60 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~   60 (149)
                      |++|..|||..|.|. ++|..+.-+.+|+.||+|+|.+++--+.-+.. .+....+.|||
T Consensus       251 L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  251 LNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             cccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence            467889999999998 89999999999999999999999866654433 55555677886

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.50  E-value=0.001  Score=58.66  Aligned_cols=40  Identities=35%  Similarity=0.473  Sum_probs=24.5

Q ss_pred             ccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880            4 LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         4 L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      |+.|+|++|+|+ .||..+.+++.|+.|+|++|+|+|.+|.
T Consensus       424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            344445555554 5666666666777777777777766655

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.27  E-value=0.0026  Score=52.19  Aligned_cols=42  Identities=43%  Similarity=0.551  Sum_probs=33.6

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG   45 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~   45 (149)
                      |.+|..|||.+|.+. +||+.+++|++|++|++.+|.|.  .|..
T Consensus       504 m~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~  545 (565)
T KOG0472|consen  504 MRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRH  545 (565)
T ss_pred             hhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCHH
Confidence            356778888888887 78888888888888888888887  5543

>PLN03210 Resistant to P

Probab=96.13  E-value=0.007  Score=55.66  Aligned_cols=57  Identities=18%  Similarity=0.206  Sum_probs=44.2

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCcccccc
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIG   58 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~g   58 (149)
                      ++|+.|+|++|...+++|.+++++++|+.|+++++..-+.+|....+..+....+.|
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~  834 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSG  834 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCC
Confidence            478899999999999999999999999999999987677788754333333333333

syringae 6; Provisional

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=95.95  E-value=0.0051  Score=44.88  Aligned_cols=37  Identities=41%  Similarity=0.604  Sum_probs=11.4

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      .+|+.||||+|.++ .|+ .+..++.|++|++++|.++.
T Consensus        42 ~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~   78 (175)
T PF14580_consen   42 DKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS   78 (175)
T ss_dssp             TT--EEE-TTS--S---T-T----TT--EEE--SS---S
T ss_pred             cCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc
Confidence            35666677777665 332 35556666666666666653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=95.65  E-value=0.0018  Score=45.95  Aligned_cols=40  Identities=35%  Similarity=0.557  Sum_probs=32.7

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRI   42 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~i   42 (149)
                      +.++.|+|++|.++ .+|.++..++.|+.+|+++|.|+-..
T Consensus        77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p  116 (177)
T KOG4579|consen   77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEP  116 (177)
T ss_pred             chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccch
Confidence            35677888888887 78888999999999999998887643

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=95.49  E-value=0.005  Score=45.34  Aligned_cols=35  Identities=37%  Similarity=0.586  Sum_probs=19.9

Q ss_pred             CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcC
Q 041880            3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRL   38 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l   38 (149)
                      +|+.|++++|++. ++|.+++.++.|+.|+++-|.|
T Consensus        57 nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl   91 (264)
T KOG0617|consen   57 NLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL   91 (264)
T ss_pred             hhhhhhcccchhh-hcChhhhhchhhhheecchhhh
Confidence            4555666666655 5555555555555555555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=95.48  E-value=0.012  Score=42.97  Aligned_cols=39  Identities=38%  Similarity=0.541  Sum_probs=15.3

Q ss_pred             CCCccEEeCCCCcCceeCCcch-hcCCCCCEEEccCCcCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQL-LGVTALASLNLSYNRLRG   40 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l-~~l~~L~~l~ls~N~l~G   40 (149)
                      ++.|+.|++++|.++ .|+..+ ..++.|+.|++++|++..
T Consensus        63 L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~  102 (175)
T PF14580_consen   63 LPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISD  102 (175)
T ss_dssp             -TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---S
T ss_pred             hhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCC
Confidence            356777888888887 454444 357778888888877754

>PLN03210 Resistant to P

Probab=95.40  E-value=0.026  Score=52.01  Aligned_cols=57  Identities=23%  Similarity=0.252  Sum_probs=34.3

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCcccccc
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIG   58 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~g   58 (149)
                      ++|+.|+|++|..-..+|.++.+++.|+.|+++++..-+.+|....+..+....+.|
T Consensus       657 ~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsg  713 (1153)
T PLN03210        657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSG  713 (1153)
T ss_pred             CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCC
Confidence            456666676666556677777777777777777665556666543333333333333

syringae 6; Provisional

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.33  E-value=0.0086  Score=26.71  Aligned_cols=13  Identities=62%  Similarity=0.759  Sum_probs=6.1

Q ss_pred             CccEEeCCCCcCc
Q 041880            3 ALESLDLSFNRLH   15 (149)
Q Consensus         3 ~L~~LdLs~N~L~   15 (149)
                      +|+.|||++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4566666666654

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=95.20  E-value=0.008  Score=47.84  Aligned_cols=38  Identities=34%  Similarity=0.358  Sum_probs=29.7

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGR   41 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~   41 (149)
                      |.++.||+|+|.+. .+ ..+..+++|+.||||+|.|+-.
T Consensus       307 Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~  344 (490)
T KOG1259|consen  307 PKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAEC  344 (490)
T ss_pred             cceeEEecccccee-ee-hhhhhcccceEeecccchhHhh
Confidence            56788888888886 33 2388899999999999988643

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=94.86  E-value=0.01  Score=43.74  Aligned_cols=43  Identities=33%  Similarity=0.594  Sum_probs=35.6

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCC-CCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGR-IPR   44 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~-iP~   44 (149)
                      |+.|+.|+++-|.|. .+|..++.++.|+.||+++|+|+.. +|.
T Consensus        78 l~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpg  121 (264)
T KOG0617|consen   78 LPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPG  121 (264)
T ss_pred             chhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCc
Confidence            467888999999997 6899999999999999999998764 443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.83  E-value=0.025  Score=27.70  Aligned_cols=20  Identities=40%  Similarity=0.614  Sum_probs=13.5

Q ss_pred             CCCccEEeCCCCcCceeCCcc
Q 041880            1 MTALESLDLSFNRLHGRIPEQ   21 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~   21 (149)
                      |++|+.|+|++|+|. .||..
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            456777777777776 55554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.83  E-value=0.025  Score=27.70  Aligned_cols=20  Identities=40%  Similarity=0.614  Sum_probs=13.5

Q ss_pred             CCCccEEeCCCCcCceeCCcc
Q 041880            1 MTALESLDLSFNRLHGRIPEQ   21 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~   21 (149)
                      |++|+.|+|++|+|. .||..
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            456777777777776 55554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=94.75  E-value=0.0073  Score=52.35  Aligned_cols=33  Identities=45%  Similarity=0.696  Sum_probs=14.3

Q ss_pred             EeCCCCcCceeCCcch-hcCCCCCEEEccCCcCCC
Q 041880            7 LDLSFNRLHGRIPEQL-LGVTALASLNLSYNRLRG   40 (149)
Q Consensus         7 LdLs~N~L~G~iP~~l-~~l~~L~~l~ls~N~l~G   40 (149)
                      |+||+|++. +||.++ .+|+.|-.||||+|.|.-
T Consensus       131 LNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~  164 (1255)
T KOG0444|consen  131 LNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEM  164 (1255)
T ss_pred             EEcccCccc-cCCchHHHhhHhHhhhccccchhhh
Confidence            334444433 344332 244444455555555443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=94.31  E-value=0.055  Score=48.05  Aligned_cols=38  Identities=32%  Similarity=0.491  Sum_probs=21.4

Q ss_pred             CCccEEeCCCCcCceeCCc---chhcC--------------CCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGRIPE---QLLGV--------------TALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~---~l~~l--------------~~L~~l~ls~N~l~G   40 (149)
                      ++|+.|||++|+|++ +|.   .+..|              ..|+.|++++|+|++
T Consensus       302 ~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~  356 (788)
T PRK15387        302 PGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS  356 (788)
T ss_pred             cccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccCC
Confidence            356677777777764 332   21111              256667777777664

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=93.89  E-value=0.017  Score=50.21  Aligned_cols=38  Identities=34%  Similarity=0.481  Sum_probs=21.4

Q ss_pred             CCccEEeCCCCcC-ceeCCcchhcCCCCCEEEccCCcCC
Q 041880            2 TALESLDLSFNRL-HGRIPEQLLGVTALASLNLSYNRLR   39 (149)
Q Consensus         2 ~~L~~LdLs~N~L-~G~iP~~l~~l~~L~~l~ls~N~l~   39 (149)
                      +.|.++++.+|+| +..||..+..|..|+.||||+|+|.
T Consensus        78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~  116 (1255)
T KOG0444|consen   78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR  116 (1255)
T ss_pred             hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh
Confidence            4455555555555 2245666666666666666666654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.61  E-value=0.013  Score=28.20  Aligned_cols=22  Identities=36%  Similarity=0.404  Sum_probs=12.7

Q ss_pred             CCCccEEeCCCCcCceeCCcch
Q 041880            1 MTALESLDLSFNRLHGRIPEQL   22 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l   22 (149)
                      +++|+.|||++|.++..-...|
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            3577888888888776544433

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=93.52  E-value=0.1  Score=46.21  Aligned_cols=13  Identities=46%  Similarity=0.582  Sum_probs=6.5

Q ss_pred             CCCEEEccCCcCC
Q 041880           27 ALASLNLSYNRLR   39 (149)
Q Consensus        27 ~L~~l~ls~N~l~   39 (149)
                      .|+.|++++|+|+
T Consensus       263 ~L~~L~Ls~N~L~  275 (754)
T PRK15370        263 ALQSLDLFHNKIS  275 (754)
T ss_pred             CCCEEECcCCccC
Confidence            4455555555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.42  E-value=0.048  Score=42.03  Aligned_cols=40  Identities=33%  Similarity=0.419  Sum_probs=34.9

Q ss_pred             CCCccEEeCCCC--cCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            1 MTALESLDLSFN--RLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         1 l~~L~~LdLs~N--~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      |+.|+.|++|.|  +.++.++...-.+++|++++++.|++.-
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~  105 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD  105 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence            578999999999  7788888777788999999999999863

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=93.36  E-value=0.0076  Score=52.82  Aligned_cols=63  Identities=29%  Similarity=0.397  Sum_probs=38.5

Q ss_pred             CCCccEEeCCCCcCceeCCc----------------------chhcCCCCCEEEccCCcCCCCCCCC--CcccCCCcccc
Q 041880            1 MTALESLDLSFNRLHGRIPE----------------------QLLGVTALASLNLSYNRLRGRIPRG--NQFNTFDNDSY   56 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~----------------------~l~~l~~L~~l~ls~N~l~G~iP~~--~~~~~~~~~~~   56 (149)
                      ++.|++|||++|.|. .+|.                      .+.+|.+|+.|||++|-|++----.  ..+..+....+
T Consensus       208 l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~L  286 (1096)
T KOG1859|consen  208 LPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWL  286 (1096)
T ss_pred             cccccccccccchhc-cccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhh
Confidence            467888888888885 4453                      2456778888899998887631100  01112233456


Q ss_pred             ccccCccC
Q 041880           57 IGNIHLCG   64 (149)
Q Consensus        57 ~gn~~lcg   64 (149)
                      .|||--|.
T Consensus       287 eGNPl~c~  294 (1096)
T KOG1859|consen  287 EGNPLCCA  294 (1096)
T ss_pred             cCCccccC
Confidence            78876664

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=93.04  E-value=0.042  Score=47.32  Aligned_cols=39  Identities=36%  Similarity=0.422  Sum_probs=22.7

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      +.|+.||||+|.+.---+++..-...|+.|+|++|+++.
T Consensus       293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~  331 (873)
T KOG4194|consen  293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR  331 (873)
T ss_pred             chhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence            445556666666655555555555566666666666554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=92.86  E-value=0.12  Score=45.76  Aligned_cols=34  Identities=35%  Similarity=0.555  Sum_probs=18.0

Q ss_pred             CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCC
Q 041880            3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLR   39 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~   39 (149)
                      +|+.|+|++|+|+ .+|..+.  +.|+.|++++|+|+
T Consensus       347 sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt  380 (754)
T PRK15370        347 ELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT  380 (754)
T ss_pred             cccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC
Confidence            4555555555554 3444332  35556666666555

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=92.32  E-value=0.09  Score=40.64  Aligned_cols=40  Identities=28%  Similarity=0.349  Sum_probs=29.9

Q ss_pred             CCccEEeCCCCcCcee----CCcchhcCCCCCEEEccCCcCCCC
Q 041880            2 TALESLDLSFNRLHGR----IPEQLLGVTALASLNLSYNRLRGR   41 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~----iP~~l~~l~~L~~l~ls~N~l~G~   41 (149)
                      ..|+.|+|++|++++.    ++..+..++.|+.|++++|.+++.
T Consensus       165 ~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  208 (319)
T cd00116         165 RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE  208 (319)
T ss_pred             CCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence            4688899999988853    444566667888999988887643

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=91.97  E-value=0.081  Score=40.89  Aligned_cols=37  Identities=38%  Similarity=0.479  Sum_probs=16.4

Q ss_pred             ccEEeCCCCcCce----eCCcchhcC-CCCCEEEccCCcCCC
Q 041880            4 LESLDLSFNRLHG----RIPEQLLGV-TALASLNLSYNRLRG   40 (149)
Q Consensus         4 L~~LdLs~N~L~G----~iP~~l~~l-~~L~~l~ls~N~l~G   40 (149)
                      |++|++++|++++    .+...+..+ +.|+.|++++|.+++
T Consensus       110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  151 (319)
T cd00116         110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG  151 (319)
T ss_pred             ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc
Confidence            4445555554442    222233333 445555555555543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=91.54  E-value=0.14  Score=43.97  Aligned_cols=38  Identities=29%  Similarity=0.420  Sum_probs=34.8

Q ss_pred             CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCC
Q 041880            3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGR   41 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~   41 (149)
                      .|..||+|+|+++ .||..+.+|..|++|.|.+|.|.-+
T Consensus       212 pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  212 PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence            3678999999998 8999999999999999999999765

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=91.43  E-value=0.073  Score=45.90  Aligned_cols=45  Identities=33%  Similarity=0.474  Sum_probs=38.7

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG   45 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~   45 (149)
                      |..++.|+|+.|+++.-=-.++..|+.|+.|+||+|.++...++.
T Consensus       268 l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~  312 (873)
T KOG4194|consen  268 LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS  312 (873)
T ss_pred             ecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch
Confidence            357899999999998666678999999999999999998877753

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=90.31  E-value=0.16  Score=45.88  Aligned_cols=44  Identities=30%  Similarity=0.437  Sum_probs=37.4

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG   45 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~   45 (149)
                      |+.|..||||+|.=-+.+|.++++|-+|++||++...++ .+|.+
T Consensus       570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~  613 (889)
T KOG4658|consen  570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSG  613 (889)
T ss_pred             CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchH
Confidence            567889999998777899999999999999999988877 66754

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=90.17  E-value=0.05  Score=47.94  Aligned_cols=39  Identities=46%  Similarity=0.617  Sum_probs=32.6

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      +.|++|||++|.++---  .+..++.|..||+++|+|.- +|
T Consensus       187 ~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~-vp  225 (1096)
T KOG1859|consen  187 PALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH-VP  225 (1096)
T ss_pred             HHhhhhccchhhhhhhH--HHHhcccccccccccchhcc-cc
Confidence            56789999999998532  78889999999999999964 44

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=90.13  E-value=0.1  Score=42.01  Aligned_cols=36  Identities=39%  Similarity=0.635  Sum_probs=17.0

Q ss_pred             CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCC
Q 041880            3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLR   39 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~   39 (149)
                      .|+.||+++|++. .+|..+.+++.|+.|++++|+++
T Consensus       141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~  176 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS  176 (394)
T ss_pred             hcccccccccchh-hhhhhhhccccccccccCCchhh
Confidence            3444555555544 34444444444444444444443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=90.06  E-value=0.1  Score=42.90  Aligned_cols=62  Identities=23%  Similarity=0.363  Sum_probs=39.0

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCC------------------------CCCEEEccCCcCCCCCCCCCccc---CCCc
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVT------------------------ALASLNLSYNRLRGRIPRGNQFN---TFDN   53 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~------------------------~L~~l~ls~N~l~G~iP~~~~~~---~~~~   53 (149)
                      |+.|+.|||++|.+++--+.++..+.                        .|++|+|..|+++-.-|..  |.   .+..
T Consensus       273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a--F~~~~~l~~  350 (498)
T KOG4237|consen  273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA--FQTLFSLST  350 (498)
T ss_pred             cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc--ccccceeee
Confidence            57899999999999987776655444                        5555666666665544432  22   2223


Q ss_pred             cccccccCccC
Q 041880           54 DSYIGNIHLCG   64 (149)
Q Consensus        54 ~~~~gn~~lcg   64 (149)
                      ..+.+||..|.
T Consensus       351 l~l~~Np~~Cn  361 (498)
T KOG4237|consen  351 LNLLSNPFNCN  361 (498)
T ss_pred             eehccCcccCc
Confidence            34566776664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=90.04  E-value=0.29  Score=39.40  Aligned_cols=42  Identities=40%  Similarity=0.487  Sum_probs=31.9

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG   45 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~   45 (149)
                      +.++.|++++|.++ .++. ++.+..|+.|+++.|.+....|..
T Consensus       255 ~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         255 SNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             cccceecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence            45778888888887 5555 778888888888888887776653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=89.37  E-value=0.27  Score=27.32  Aligned_cols=33  Identities=21%  Similarity=0.359  Sum_probs=21.8

Q ss_pred             CCCCEEEccCCcCCCCCCC-CCcccCCCccccccc
Q 041880           26 TALASLNLSYNRLRGRIPR-GNQFNTFDNDSYIGN   59 (149)
Q Consensus        26 ~~L~~l~ls~N~l~G~iP~-~~~~~~~~~~~~~gn   59 (149)
                      +.|++|++++|+++ .+|. -..+..+....+.+|
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCC
Confidence            46899999999999 4666 344555555666666

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=89.20  E-value=0.54  Score=35.41  Aligned_cols=39  Identities=28%  Similarity=0.424  Sum_probs=22.5

Q ss_pred             ccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880            4 LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         4 L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      ...+||++|.+-- + ..+..++.|.+|.+.+|.+.-.=|.
T Consensus        44 ~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~   82 (233)
T KOG1644|consen   44 FDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPD   82 (233)
T ss_pred             cceecccccchhh-c-ccCCCccccceEEecCCcceeeccc
Confidence            4456777776631 1 2344566666777777766655444

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=88.42  E-value=0.32  Score=24.17  Aligned_cols=16  Identities=38%  Similarity=0.684  Sum_probs=9.7

Q ss_pred             CccEEeCCCCcCceeCC
Q 041880            3 ALESLDLSFNRLHGRIP   19 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP   19 (149)
                      .|+.|+.++|+|+ ++|
T Consensus         3 ~L~~L~vs~N~Lt-~LP   18 (26)
T smart00364        3 SLKELNVSNNQLT-SLP   18 (26)
T ss_pred             ccceeecCCCccc-cCc
Confidence            4666666666665 344

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.95  E-value=0.19  Score=40.11  Aligned_cols=41  Identities=37%  Similarity=0.425  Sum_probs=31.9

Q ss_pred             CccEEeCCCCcCce--eCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            3 ALESLDLSFNRLHG--RIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         3 ~L~~LdLs~N~L~G--~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      .+..|||.+|.++-  +|-.-+.+|+.|++||++.|+|+-+|-
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~  114 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK  114 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc
Confidence            45678999998864  455557789999999999999987654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=87.93  E-value=0.34  Score=39.67  Aligned_cols=41  Identities=32%  Similarity=0.434  Sum_probs=27.8

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      .+|+.|+|..|++.. |...+..++.|++|++++|.++...+
T Consensus        95 ~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~  135 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG  135 (414)
T ss_pred             cceeeeeccccchhh-cccchhhhhcchheeccccccccccc
Confidence            467777788887763 33336667777788888777766544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=87.37  E-value=0.21  Score=44.96  Aligned_cols=59  Identities=31%  Similarity=0.429  Sum_probs=37.1

Q ss_pred             CCccEEeCCCCcCceeCCc----------------------chhcCCCCCEEEccCCcCCC-CCCCCCcccCCCcccccc
Q 041880            2 TALESLDLSFNRLHGRIPE----------------------QLLGVTALASLNLSYNRLRG-RIPRGNQFNTFDNDSYIG   58 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~----------------------~l~~l~~L~~l~ls~N~l~G-~iP~~~~~~~~~~~~~~g   58 (149)
                      ..|+.|+||+|.|+ .||.                      .+..++.|+.+|+|.|+|+- .+|......++....+.|
T Consensus       407 e~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSG  485 (1081)
T KOG0618|consen  407 EELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSG  485 (1081)
T ss_pred             HHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccC
Confidence            34666777777665 4444                      45667788888999988864 444433224455556777


Q ss_pred             ccC
Q 041880           59 NIH   61 (149)
Q Consensus        59 n~~   61 (149)
                      |..
T Consensus       486 N~~  488 (1081)
T KOG0618|consen  486 NTR  488 (1081)
T ss_pred             Ccc
Confidence            764

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=87.19  E-value=0.22  Score=44.81  Aligned_cols=41  Identities=37%  Similarity=0.617  Sum_probs=33.1

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      +.+|++|+|.+|.+. ..|.++..+.+|++||+|+|+|. ++|
T Consensus        90 ~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~P  130 (1081)
T KOG0618|consen   90 MRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIP  130 (1081)
T ss_pred             hhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCc
Confidence            356788888888887 78888888889999999988874 555

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=86.67  E-value=0.55  Score=23.41  Aligned_cols=14  Identities=50%  Similarity=0.636  Sum_probs=9.4

Q ss_pred             CCccEEeCCCCcCc
Q 041880            2 TALESLDLSFNRLH   15 (149)
Q Consensus         2 ~~L~~LdLs~N~L~   15 (149)
                      ++|+.|||++|.|.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            45677777777763

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=86.59  E-value=0.67  Score=32.99  Aligned_cols=9  Identities=11%  Similarity=0.530  Sum_probs=3.4

Q ss_pred             eeehhhHHH
Q 041880          103 LGYASGVVI  111 (149)
Q Consensus       103 ~~~~~~~~~  111 (149)
                      +|+++.+++
T Consensus        56 VGVGg~ill   64 (154)
T PF04478_consen   56 VGVGGPILL   64 (154)
T ss_pred             ecccHHHHH
Confidence            333333333

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=85.79  E-value=0.71  Score=22.86  Aligned_cols=15  Identities=53%  Similarity=0.778  Sum_probs=10.1

Q ss_pred             CCCccEEeCCCCcCc
Q 041880            1 MTALESLDLSFNRLH   15 (149)
Q Consensus         1 l~~L~~LdLs~N~L~   15 (149)
                      +..|+.|+|++|.++
T Consensus         1 L~~L~~L~L~~NkI~   15 (26)
T smart00365        1 LTNLEELDLSQNKIK   15 (26)
T ss_pred             CCccCEEECCCCccc
Confidence            356777777777764

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=84.48  E-value=0.44  Score=38.98  Aligned_cols=38  Identities=39%  Similarity=0.467  Sum_probs=26.6

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      +++|++|||++|.++.-.  .+..++.|+.|++++|.++.
T Consensus       117 ~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~  154 (414)
T KOG0531|consen  117 LVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD  154 (414)
T ss_pred             hhcchheecccccccccc--chhhccchhhheeccCcchh
Confidence            457888899999887543  35566667777777776643

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=83.95  E-value=0.44  Score=38.24  Aligned_cols=37  Identities=41%  Similarity=0.410  Sum_probs=31.8

Q ss_pred             CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      .|+.||||+|.++ .|-.++--++.++.|++|+|.+.-
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~  321 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT  321 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEeccccceee
Confidence            4788999999998 677788888999999999998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	149
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-09
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-09
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-09

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 38/64 (59%)
Query: 4   LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLC 63
           L  LDL  NR++G +P+ L  +  L SLN+S+N L G IP+G     FD  +Y  N  LC
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305
Query: 64  GEPL 67
           G PL
Sbjct: 306 GSPL 309

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 39/67 (58%)
Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
           +  L  LDLS N+L GRIP+ +  +T L  ++LS N L G IP   QF TF    ++ N 
Sbjct: 679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 738
Query: 61  HLCGEPL 67
            LCG PL
Sbjct: 739 GLCGYPL 745

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 39/67 (58%)
Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
           +  L  LDLS N+L GRIP+ +  +T L  ++LS N L G IP   QF TF    ++ N 
Sbjct: 676 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 735
Query: 61  HLCGEPL 67
            LCG PL
Sbjct: 736 GLCGYPL 742

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	149
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-24
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  119 bits (301), Expect = 2e-32
 Identities = 33/88 (37%), Positives = 44/88 (50%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
           +  L  LDLS N+L GRIP+ +  +T L  ++LS N L G IP   QF TF    ++ N 
Sbjct: 679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 738

Query: 61  HLCGEPLTVTCSNDGQPKAPPSASTDHE 88
            LCG PL     ++    A    S  H 
Sbjct: 739 GLCGYPLPRCDPSNADGYAHHQRSHHHH 766

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.6 bits (140), Expect = 9e-11
 Identities = 17/46 (36%), Positives = 24/46 (52%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN 46
            +AL+ LD+S N+L G     +   T L  LN+S N+  G IP   
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP 267

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 20/43 (46%), Positives = 23/43 (53%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
            + L SL LSFN L G IP  L  ++ L  L L  N L G IP
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.1 bits (136), Expect = 3e-10
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLG-VTALASLNLSYNRLRGRIP 43
            + LESL LS N   G +P   L  +  L  L+LS+N   G +P
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.7 bits (135), Expect = 4e-10
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44
           ++ L  L L  N L G IP++L+ V  L +L L +N L G IP 
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.3 bits (134), Expect = 7e-10
 Identities = 18/43 (41%), Positives = 23/43 (53%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
              L+ L L  N   G+IP  L   + L SL+LS+N L G IP
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.5 bits (132), Expect = 1e-09
 Identities = 21/43 (48%), Positives = 25/43 (58%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
           +  LE+L L FN L G IP  L   T L  ++LS NRL G IP
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.5 bits (132), Expect = 1e-09
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGV---TALASLNLSYNRLRGRIPRGN 46
           + +LE LDLS N + G      +       L  L +S N++ G +    
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSR 198

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.5 bits (132), Expect = 1e-09
 Identities = 16/43 (37%), Positives = 20/43 (46%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
              L  LDLS N  +G +P      + L SL LS N   G +P
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 9/43 (20%), Positives = 18/43 (41%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
           ++     +++     G          ++  L++SYN L G IP
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTA-LASLNLSYNRLRGRIP 43
           M  L+ LDLSFN   G +PE L  ++A L +L+LS N   G I 
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.4 bits (129), Expect = 3e-09
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR--GNQFNTFDNDSYIG 58
           +  L  L LS N   G IP +L    +L  L+L+ N   G IP     Q      +   G
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572

Query: 59  NI 60
             
Sbjct: 573 KR 574

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.0 bits (128), Expect = 3e-09
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44
              LE LD+S N     IP  L   +AL  L++S N+L G   R
Sbjct: 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR 241

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.6 bits (127), Expect = 5e-09
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLG-VTALASLNLSYNRLRGRIP 43
           + +L+ L L+ N+  G IP+ L G    L  L+LS N   G +P
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.2 bits (126), Expect = 8e-09
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
            T L+ L++S N+  G IP   L   +L  L+L+ N+  G IP
Sbjct: 246 CTELKLLNISSNQFVGPIPPLPL--KSLQYLSLAENKFTGEIP 286

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.8 bits (125), Expect = 1e-08
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQF 48
           +T LESL LS + ++G +        +L SL+LS N L G +      
Sbjct: 76  LTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSL 122

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.9 bits (120), Expect = 4e-08
 Identities = 19/44 (43%), Positives = 23/44 (52%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44
            T L  + LS NRL G IP+ +  +  LA L LS N   G IP 
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 9e-08
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 1   MTALESLDLSFNRLHGRIPE--QLLGVTALASLNLSYNRLRGRIPRGNQFN 49
             +L SLDLS N L G +     L   + L  LN+S N L           
Sbjct: 99  SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK 149

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 1   MTALESLDLSFNRLHGRIP-EQLLGVTALASLNLSYNRLRGRIP 43
            + L+ L++S N L         L + +L  L+LS N + G   
Sbjct: 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 4   LESLDLSFNRLHGRIPEQLLGV--TALASLNLSYNRLRGRIPR 44
           L +LDLS N   G I   L       L  L L  N   G+IP 
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 4  LESLDLSFNRLH---GRIPEQLLGVTALASLNLSYNRLRGRIP 43
          + S+DLS   L+     +   LL +T L SL LS + + G + 
Sbjct: 52 VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS 94

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.3 bits (95), Expect = 9e-05
 Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 2/46 (4%)

Query: 1   MTALESLDLSFN--RLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44
               +    + N     G   EQL  ++     N++     G    
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
             +L  LDL+ N  +G IP  +       S  ++ N + G+     + +    + +    
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAM----FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592

Query: 61  HL 62
            L
Sbjct: 593 LL 594

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 93.4 bits (233), Expect = 5e-24
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
              L  LDL  NR++G +P+ L  +  L SLN+S+N L G IP+G     FD  +Y  N 
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302

Query: 61  HLCGEPLTVTCS 72
            LCG PL   C+
Sbjct: 303 CLCGSPLP-ACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.0 bits (136), Expect = 3e-10
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44
           +  L +LD S+N L G +P  +  +  L  +    NR+ G IP 
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.1 bits (131), Expect = 1e-09
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 12/63 (19%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALA-SLNLSYNRLRGRIPRGNQFNTFDNDSYIGN 59
           +  L  +    NR+ G IP+     + L  S+ +S NRL G+IP               N
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP-----------PTFAN 196

Query: 60  IHL 62
           ++L
Sbjct: 197 LNL 199

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.9 bits (128), Expect = 3e-09
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
           +T L  L ++   + G IP+ L  +  L +L+ SYN L G +P
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.5 bits (114), Expect = 3e-07
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 1   MTALESLDLS-FNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
           +  L  L +   N L G IP  +  +T L  L +++  + G IP
Sbjct: 75  LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP 118

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 1  MTALESLDLSFNRLHGR--IPEQLLGVTALASLNLS-YNRLRGRIP 43
             + +LDLS   L     IP  L  +  L  L +   N L G IP
Sbjct: 49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.3 bits (126), Expect = 6e-09
 Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 6/74 (8%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTF-DNDSYIGN 59
           +  L+ +DL  N L+           +L SLNL  N +            F      +  
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK-----KVFGPAFRNLTE 613

Query: 60  IHLCGEPLTVTCSN 73
           + +   P   TC +
Sbjct: 614 LDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 8/45 (17%), Positives = 18/45 (40%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45
            + L  L+L+ N++     +    +  L  L+L  N +   +   
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 4/74 (5%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGV-TALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN 59
             +L+SL+L  N +     +        L  L++ +N           F  + N+++   
Sbjct: 583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNI 642

Query: 60  IHLCGEPLTVTCSN 73
             L        C+ 
Sbjct: 643 PELSSH---YLCNT 653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 12/43 (27%), Positives = 18/43 (41%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
              L +LDLS N L        + +  L  L LS N+++    
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 10/53 (18%), Positives = 18/53 (33%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           +  +  + LS+N+           V +L  L L    L+      + F    N
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 14/76 (18%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP--------------RGN 46
            + L SLD+ FN +    PE    +  L  LNL +N L                     N
Sbjct: 48  YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107

Query: 47  QFNTFDNDSYIGNIHL 62
                 N+ ++   +L
Sbjct: 108 SIQKIKNNPFVKQKNL 123

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           +  LE LDL  N +   +  Q   G+  +  + LSYN+           N+F  
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR-----NSFAL 452

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 1   MTALESLDLSFNRLHGRIPE--QLLGVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           +  L+ L LS N++     E   +   ++L  L LS N+++   P       F  
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP-----GCFHA 193

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 6e-07
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 2   TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIH 61
           ++L+ L+LS N++    P     +  L  L L+  +L   +           ++ I N+ 
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK--LCLELANTSIRNLS 228

Query: 62  L 62
           L
Sbjct: 229 L 229

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 13/84 (15%), Positives = 22/84 (26%), Gaps = 16/84 (19%)

Query: 1   MTALESLDLSFNRLHG--RIPEQLLGVTALASLNLSYNRLRGRIPR-------------- 44
           + +L+ L L    L      P     +  L  L+LS N +                    
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512

Query: 45  GNQFNTFDNDSYIGNIHLCGEPLT 68
            N        +  G      + L+
Sbjct: 513 HNNLARLWKHANPGGPIYFLKGLS 536

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 12/44 (27%), Positives = 18/44 (40%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44
            T L  LDLS+N L+    +    +  L    L YN ++     
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 12/55 (21%), Positives = 21/55 (38%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDS 55
           +  LE L++  N + G       G+  L  L+LS +    R      F +  +  
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 4  LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
          +  L+L+ N+L           + L SL++ +N +    P
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 66

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 11/44 (25%), Positives = 16/44 (36%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR 44
            T L  L L  N +        +    L +L+LS+N L      
Sbjct: 96  CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 8/56 (14%)

Query: 1   MTALESLDLSFNRLHGRIPEQL---LGVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           +  L  L L+  +L   + E+L   L  T++ +L+LS ++L           TF  
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN-----TTFLG 244

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 16/71 (22%)

Query: 1   MTALESLDLSFNRLHGRIPEQL--LGVTALASLNLSYNRLRGRIPR-------------- 44
            T++ +L LS ++L          L  T L  L+LSYN L                    
Sbjct: 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280

Query: 45  GNQFNTFDNDS 55
            N      + S
Sbjct: 281 YNNIQHLFSHS 291

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 8/51 (15%)

Query: 1   MTALESLDLSFNRLH--------GRIPEQLLGVTALASLNLSYNRLRGRIP 43
           +  LE LDL  N L         G     L G++ L  LNL  N       
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 9/57 (15%)

Query: 1   MTALESLDLSFNRLHGRIPE----QLLGVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           +  L+ L LS +    R         L  + L  LNL+ N++          + F  
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES-----DAFSW 403

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 17/73 (23%)

Query: 4  LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP--------------RGNQFN 49
           E  D S  +L  ++P+ L   T +  LNL++N+LR                    N  +
Sbjct: 6  HEVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 50 TFDNDSYIGNIHL 62
            + +       L
Sbjct: 63 KLEPELCQKLPML 75

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 9/50 (18%), Positives = 13/50 (26%), Gaps = 5/50 (10%)

Query: 4   LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
                +S   L          +  L  LN+  N + G        N F  
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS-----NMFTG 351

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 8/43 (18%), Positives = 18/43 (41%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
           +++L+ L++S N            + +L  L+ S N +     
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 8/45 (17%), Positives = 16/45 (35%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45
           +  L  LD+S             G+++L  L ++ N  +      
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 14/69 (20%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP--------------RGN 46
           +  L  LDLS  +L    P     +++L  LN+S+N                       N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528

Query: 47  QFNTFDNDS 55
              T     
Sbjct: 529 HIMTSKKQE 537

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 14/73 (19%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR--------------GN 46
           ++ L +L L+ N +         G+++L  L      L                     N
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 47  QFNTFDNDSYIGN 59
              +F    Y  N
Sbjct: 135 LIQSFKLPEYFSN 147

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 9/43 (20%), Positives = 18/43 (41%)

Query: 1  MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
             L+ LDLS   +          ++ L++L L+ N ++    
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 14/88 (15%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGV-TALASLNLSYNRLRGRIP--------RGNQFNTF 51
           + +L+ LD S N +     ++L    ++LA LNL+ N               +  +    
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 576

Query: 52  DNDSYIGNI--HLCGEPLT---VTCSND 74
           + +           G P+    +TC  +
Sbjct: 577 EVERMECATPSDKQGMPVLSLNITCQMN 604

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 11/40 (27%), Positives = 16/40 (40%)

Query: 4  LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
           ++LDLSFN L             L  L+LS   ++    
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPR 44
           +  LE LD   + L       +   +  L  L++S+   R     
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 15/76 (19%)

Query: 1   MTALESLDLSFNRLH--GRIPEQLLGVTALASLNLSYNRLRGRIP-------------RG 45
           + +LE LDLS N L   G   +   G T+L  L+LS+N +                  + 
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405

Query: 46  NQFNTFDNDSYIGNIH 61
           +        S   ++ 
Sbjct: 406 SNLKQMSEFSVFLSLR 421

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 1   MTALESLDLSFNRLHG-RIPEQLLGVTALASLNLSYNRLRGRIP 43
           +  L+ L+++ N +   ++PE    +T L  L+LS N+++    
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTAL----ASLNLSYNRLRGRIP 43
           +T LE LDLS N++       L  +  +     SL+LS N +    P
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 4/72 (5%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG----RIPRGNQFNTFDNDSY 56
              +  L L      GR+P+ +  +T L  L L  +  +       P+G   N  D    
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 57  IGNIHLCGEPLT 68
              +H     + 
Sbjct: 140 KMRMHYQKTFVD 151

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 17/74 (22%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP---------------RG 45
           M  L  L+  +N+L G++P        LASLNL+YN++   IP                 
Sbjct: 329 MKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAH 386

Query: 46  NQFNTFDNDSYIGN 59
           N+     N     +
Sbjct: 387 NKLKYIPNIFDAKS 400

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 6/43 (13%), Positives = 16/43 (37%), Gaps = 3/43 (6%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
             +L  L +  N +   + E++     ++ L++  N       
Sbjct: 565 CPSLTQLQIGSNDIRK-VNEKIT--PNISVLDIKDNPNISIDL 604

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN 46
              + S++LS N++     E     + L+S+NL  N L   IP+ +
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNS 476

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.2 bits (110), Expect = 9e-07
 Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 7/50 (14%)

Query: 1   MTALESLDLSFNRLHG-------RIPEQLLGVTALASLNLSYNRLRGRIP 43
           ++ + ++D S+N +          +         ++S+NLS N++     
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 1   MTALESLDLSFNRL-HGRIPEQLLGVTALASLNLSYNRLRGRIP 43
              ++ + + +N L    +   L  +  L  L   YN+L G++P
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 13/71 (18%)

Query: 4   LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP------------RGNQFNTF 51
               D   NR     PE +    +L  L +  N +R  +             + N   + 
Sbjct: 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKITPNISVLDIKDNPNISI 602

Query: 52  DNDSYIGNIHL 62
           D       I  
Sbjct: 603 DLSYVCPYIEA 613

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 1   MTALESLDLSFNRLHGRIPE--QLLGVTALASLNLSYNRLRGRIPRG 45
              L S+DL FN+L   + +  +   +  L  ++LSYN      P  
Sbjct: 487 TYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQ 531

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 8/60 (13%)

Query: 1   MTALESLDLSFNRLHG-------RIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
            + L S++L  N L            E       L S++L +N+L   +    +  T   
Sbjct: 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPY 514

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 6/51 (11%), Positives = 19/51 (37%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTF 51
           +  L  +++       ++P  L  +  +  +N++ NR        + +   
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 7/50 (14%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNL------SYNRLRGRIPR 44
           +  L  +DLS+N      P Q L  + L    +        NR     P 
Sbjct: 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 7/57 (12%), Positives = 15/57 (26%), Gaps = 4/57 (7%)

Query: 1   MTALESLDLSFNRLHG----RIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           +T LE L L  +          P+ +    +           +      +    F +
Sbjct: 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 5/39 (12%), Positives = 11/39 (28%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLR 39
              +  LD+  N         +          L Y++ +
Sbjct: 586 TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 1   MTALESLDLSFNRLHGRIPE--QLLGVTALASLNLSYNRLRGRIPR 44
              +E+L  + N+L   IP       V+ +++++ SYN +     +
Sbjct: 376 TEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 5/52 (9%), Positives = 18/52 (34%), Gaps = 9/52 (17%)

Query: 1   MTALESLDLSFNRLH--------GRIPEQLLGVTALASLNLSYNRLR-GRIP 43
           +  ++ ++++ NR           +          +  + + YN L+   + 
Sbjct: 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 3/43 (6%), Positives = 12/43 (27%), Gaps = 1/43 (2%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
                 +    N +   + + ++ +T L    +  +       
Sbjct: 182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENI 223

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.5 bits (118), Expect = 6e-08
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 4   LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLC 63
           ++ LDL  N++   IP+Q++ + AL  LN++ N+L+  +P G     FD  + +  I L 
Sbjct: 423 IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDG----IFDRLTSLQKIWLH 476

Query: 64  GEPLTVTCS 72
             P   +C 
Sbjct: 477 TNPWDCSCP 485

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQF 48
              LE LDLS N+L   I         L  L+LS+N     +P   +F
Sbjct: 68  NQELEYLDLSHNKLVK-ISCHPT--VNLKHLDLSFNAFD-ALPICKEF 111

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 37.9 bits (88), Expect = 7e-04
 Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 2  TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
               L++S N +       +L ++ L  L +S+NR++  +        F  
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDIS----VFKF 67

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 15/70 (21%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP---------------RG 45
           +  L  LD+S+           LG+T+L +L ++ N  +                     
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482

Query: 46  NQFNTFDNDS 55
            Q        
Sbjct: 483 CQLEQISWGV 492

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
           +  L+ L++S N L          + +L++L+ S+NR+                  +   
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG-----ILQHFPKSLAFF 550

Query: 61  HLCGEPLTVTCSN 73
           +L    +   C +
Sbjct: 551 NLTNNSVACICEH 563

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 14/73 (19%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR--------------GN 46
           +  L +L L+ N +    P    G+T+L +L     +L                     N
Sbjct: 79  LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138

Query: 47  QFNTFDNDSYIGN 59
             ++    +Y  N
Sbjct: 139 FIHSCKLPAYFSN 151

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 16/77 (20%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG--------------- 45
             +L  LDLSFN     +    +G+  L  L+  ++ L+                     
Sbjct: 375 TNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433

Query: 46  NQFNTFDNDSYIGNIHL 62
                  +  ++G   L
Sbjct: 434 TNTKIDFDGIFLGLTSL 450

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 1  MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45
           + L+ LDLS   +     +   G+  L++L L+ N ++     G
Sbjct: 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS-FSPG 98

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 1   MTALESLDLSFNRLHG-RIPEQLLGVTALASLNLSYNRLRG 40
           +  L+ L+++ N +H  ++P     +T L  ++LSYN ++ 
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 4  LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45
           +++DLSFN L           + L  L+LS   +   I   
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDK 74

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40
           +  L+SL L+ N+    I  + + + +L+ L+LS N L  
Sbjct: 327 LPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSF 364

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 1   MTALESLDLSFNRLHGRIPE--QLLGVTALASLNLSYNRLR 39
           + +L  LDLS N L          LG  +L  L+LS+N   
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 12/45 (26%), Positives = 23/45 (51%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45
           ++ L+SL+LS+N       E       L  L+L++ RL+ +  + 
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 22/91 (24%), Positives = 30/91 (32%), Gaps = 18/91 (19%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP-------------RGNQ 47
           +  LE L LSF  L          +  +  ++LS+NRL                    N 
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNH 534

Query: 48  F-----NTFDNDSYIGNIHLCGEPLTVTCSN 73
                 +     S    I+L   PL  TCSN
Sbjct: 535 ISIILPSLLPILSQQRTINLRQNPLDCTCSN 565

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 10/45 (22%), Positives = 18/45 (40%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45
           ++ L+ L LS N+             +L  L++  N  R  +  G
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 10/40 (25%), Positives = 14/40 (35%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40
              L++L L+ N L       L G  AL  L      +  
Sbjct: 80  QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS 119

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           +  L+ L+LS + L     +   G+ AL  LNL  N       +  + N+   
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ--KTNSLQT 474

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
            + L+ LDL+   L   +P  L+G++ L  L LS N+            +  N
Sbjct: 277 FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ-----ISASN 323

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 9/40 (22%), Positives = 17/40 (42%)

Query: 1  MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40
          +  L  LDL+  +++    +       L +L L+ N L  
Sbjct: 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF 95

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 9/40 (22%), Positives = 13/40 (32%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40
              LESL L  N +      +      L  L+   N +  
Sbjct: 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 16/77 (20%)

Query: 1   MTALESLDLSFNRLH--GRIPEQLLGVTALASLNLSYNRLRGRIP--------------R 44
           +  L  LDLS + +        QL  ++ L SLNLSYN                      
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 45  GNQFNTFDNDSYIGNIH 61
             +    D  S   N+H
Sbjct: 409 FTRLKVKDAQSPFQNLH 425

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 10/74 (13%), Positives = 16/74 (21%), Gaps = 5/74 (6%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
             AL+ L      +       L     L SL L  N +                  +  +
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL-----PKGFPTEKLKVL 158

Query: 61  HLCGEPLTVTCSND 74
                 +      D
Sbjct: 159 DFQNNAIHYLSKED 172

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQF 48
             +L  L +  N     +    L  +  L  L+LS++ +        Q 
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 4  LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           E L+ SFN L          +  L  L+L+  ++   I       TF +
Sbjct: 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHED----TFQS 79

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 8/67 (11%)

Query: 1   MTALESLDLSFNRLHGRI---PEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYI 57
           + AL+ L+L  N            L  +  L  L LS+  L          + F +   +
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ-----HAFTSLKMM 502

Query: 58  GNIHLCG 64
            ++ L  
Sbjct: 503 NHVDLSH 509

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 4   LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45
           +ES++L  +             + L  L+L+   L   +P G
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSG 296

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 4   LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
             SL+L+ N + G I           SLN    +    I +G + +T  +
Sbjct: 181 NLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 4/72 (5%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG--NQFNTFDNDSYIG 58
           +  L  L L  N+L  R+P  L  +  L  + L  N +  ++              +Y  
Sbjct: 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYN 297

Query: 59  NIHLCGEPLTVT 70
            I L   P+   
Sbjct: 298 GISLFNNPVPYW 309

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRG 45
            + L  L L  N++   I    L  +  L  L+L  N+L  R+P G
Sbjct: 216 YSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAG 259

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 8/75 (10%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
           +  L+ L +S N L   IP  L   ++L  L +  NR+R ++P+G     F     +  I
Sbjct: 101 LRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKG----VFSGLRNMNCI 152

Query: 61  HLCGEPLTVTCSNDG 75
            + G PL  +    G
Sbjct: 153 EMGGNPLENSGFEPG 167

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 7/68 (10%)

Query: 2   TALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
             L  L L  N++   I  + L   + L  L L +N++R  I  G    +      +  +
Sbjct: 193 ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENG----SLSFLPTLREL 246

Query: 61  HLCGEPLT 68
           HL    L+
Sbjct: 247 HLDNNKLS 254

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.2 bits (112), Expect = 4e-07
 Identities = 10/50 (20%), Positives = 20/50 (40%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNT 50
           +  L  ++L       ++P+ L  +  L SLN++ NR          +  
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.8 bits (111), Expect = 5e-07
 Identities = 8/40 (20%), Positives = 16/40 (40%)

Query: 4   LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
           +  L L+     GR+P+ +  +T L  L+   +       
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR 364

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 10/57 (17%)

Query: 1   MTALESLDLSFNRLHG---------RIPEQLLGVTALASLNLSYNRLRGRIPRGNQF 48
           +  L+SL+++ NR            R+ +       +    + YN L    P     
Sbjct: 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASL 569

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 19/80 (23%)

Query: 1   MTALESLDLSF------NRLHGRIPEQLLGVTALASLNLSYNRLRGRIP----------- 43
            + L++  +        NR+  + P  +    +L  L +  N +R  +            
Sbjct: 775 SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKLTPQLYILD 833

Query: 44  -RGNQFNTFDNDSYIGNIHL 62
              N   + D  S    I  
Sbjct: 834 IADNPNISIDVTSVCPYIEA 853

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 4   LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
             ++ LS+N +     E     + ++++ LS N +   IP
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIP 713

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQF 48
              L  L L +N++   IPE        +  L  S+N+L+  IP     
Sbjct: 594 NVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNA 640

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN 59
           +  L ++D+S+N      P Q L  + L +  + + R       GN+         I  
Sbjct: 752 LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE----GNRILRQWPTG-ITT 804

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGV-TALASLNLSYNRLR 39
              ++   + +N L        L     L  L+  +N++R
Sbjct: 547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.0 bits (96), Expect = 6e-05
 Identities = 8/60 (13%), Positives = 20/60 (33%), Gaps = 8/60 (13%)

Query: 1   MTALESLDLSFNRL-------HGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
            + + ++ LS N +                    L +++L +N+L   +    +  T   
Sbjct: 696 GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPY 754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 5/48 (10%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTA-----LASLNLSYNRLRGRIP 43
           +  + S+D S+N++          +        +++ LSYN ++    
Sbjct: 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT 690

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 1   MTALESLDLSFNRLHGRIPE--QLLGVTALASLNLSYNRLRG 40
              +E L  S N+L   IP       V  + S++ SYN++  
Sbjct: 618 TDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGS 658

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.0 bits (112), Expect = 5e-07
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45
           +  L SLD+S N  H  +P+       +  LNLS   +R  +   
Sbjct: 386 LKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTC 428

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 5e-05
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
           +  L+ L +S N+L   +P+  L    L  + +S N+L+  +P G     FD  + +  I
Sbjct: 450 LPRLQELYISRNKLK-TLPDASL-FPVLLVMKISRNQLK-SVPDG----IFDRLTSLQKI 502

Query: 61  HLCGEPLTVTCSN 73
            L   P   +C  
Sbjct: 503 WLHTNPWDCSCPR 515

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFN 49
           + +LE LDLS N L   +       +++L  LNL  N  +  +   + F 
Sbjct: 73  LGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFP 120

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 2  TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           A++SLDLSFN++       L     L  L L  +R+   I        F +
Sbjct: 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGD----AFYS 72

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 16/74 (21%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG--------------- 45
              L+ L L  +R++    +    + +L  L+LS N L   +                  
Sbjct: 49  CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMG 107

Query: 46  NQFNTFDNDSYIGN 59
           N + T    S   N
Sbjct: 108 NPYQTLGVTSLFPN 121

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 1   MTALESLDLSFNRLHGRIPEQ-LLGVTALASLNLSYNRLRGRIPRG 45
           +T L++L +        I      G+T+L  L +    LR      
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQ 166

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 1   MTALESLDLSFNRLH--GRIPEQLLGVTALASLNLSYNRLR 39
             +L++L LS N L    +  E LL +  L SL++S N   
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.4 bits (110), Expect = 6e-07
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 1   MTALESLDLSFNRLHGRIPEQL-LGVTALASLNLSYNRLRGRIPRG 45
              L+ LDLS N L            + L SLNLS+  L+ ++P+G
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 39.9 bits (93), Expect = 9e-05
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40
            + L SL+LSF  L  ++P+ L     L+ L+LSYNRL  
Sbjct: 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 4   LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40
           L  LDLS+NRL  R P     +  + +L+L  N    
Sbjct: 276 LSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 7/78 (8%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
              L++LDLS N+L   +  +      +  ++L  N+L   I              + + 
Sbjct: 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIE-----KALRFSQNLEHF 242

Query: 61  HLCGEPLTVTCSNDGQPK 78
            L G         D   K
Sbjct: 243 DLRGNGFHCGTLRDFFSK 260

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 15/39 (38%), Positives = 17/39 (43%)

Query: 1  MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLR 39
             ++ LDLS N L       L   T L  LNLS N L 
Sbjct: 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQ 47
            T LE L+LS N L+    + L  ++ L +L+L+ N ++  +  G  
Sbjct: 57  FTKLELLNLSSNVLYE-TLD-LESLSTLRTLDLNNNYVQ-ELLVGPS 100

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 8/73 (10%), Positives = 24/73 (32%), Gaps = 19/73 (26%)

Query: 2   TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG---------------N 46
            ++E+L  + N +  R+           ++ L+ N++   +                  N
Sbjct: 99  PSIETLHAANNNIS-RVSCSRG--QGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLN 154

Query: 47  QFNTFDNDSYIGN 59
           + +T +      +
Sbjct: 155 EIDTVNFAELAAS 167

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 1/45 (2%)

Query: 1  MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45
              +   ++ + L   +         +  L+LS N L  +I   
Sbjct: 9  GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAA 52

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 6/53 (11%), Positives = 18/53 (33%), Gaps = 1/53 (1%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
               +++ L+ N++           + +  L+L  N +   +       + D 
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDT 170

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.0 bits (109), Expect = 8e-07
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 7/74 (9%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
              L++LDLS N+L   +  +      +  ++L  N+L   I              + + 
Sbjct: 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIE-----KALRFSQNLEHF 242

Query: 61  HLCGEPLTVTCSND 74
            L G         D
Sbjct: 243 DLRGNGFHCGTLRD 256

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 15/40 (37%), Positives = 17/40 (42%)

Query: 1  MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40
             ++ LDLS N L       L   T L  LNLS N L  
Sbjct: 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.0 bits (96), Expect = 6e-05
 Identities = 6/53 (11%), Positives = 18/53 (33%), Gaps = 1/53 (1%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
               +++ L+ N++           + +  L+L  N +   +       + D 
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSDT 170

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 6e-05
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQ 47
            T LE L+LS N L+    + L  ++ L +L+L+ N ++  +  G  
Sbjct: 57  FTKLELLNLSSNVLYE-TLD-LESLSTLRTLDLNNNYVQ-ELLVGPS 100

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 1/45 (2%)

Query: 1  MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45
              +   ++ + L   +         +  L+LS N L  +I   
Sbjct: 9  GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAA 52

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 8/73 (10%), Positives = 24/73 (32%), Gaps = 19/73 (26%)

Query: 2   TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG---------------N 46
            ++E+L  + N +  R+           ++ L+ N++   +                  N
Sbjct: 99  PSIETLHAANNNIS-RVSCSRG--QGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLN 154

Query: 47  QFNTFDNDSYIGN 59
           + +T +      +
Sbjct: 155 EIDTVNFAELAAS 167

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 37.5 bits (87), Expect = 8e-04
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLG-VTALASLNLSYNRLRGRIP 43
            + ++ LDL  N +      +L      L  LNL YN +   + 
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK 185

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN 59
           +  L  LDLS  +L  ++       +++L  LN++ N+L+  +P G     FD  + +  
Sbjct: 469 LRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLK-SVPDG----IFDRLTSLQK 522

Query: 60  IHLCGEPLTVTCSN 73
           I L   P   +C  
Sbjct: 523 IWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQF 48
            T+L+ LDLSFN +   +    LG+  L  L+  ++ L+ ++   + F
Sbjct: 372 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVF 417

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           +++L+ L      L       +  +  L  LN+++N ++        F+   N
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTN 150

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 8/45 (17%), Positives = 16/45 (35%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45
           +  L  LD+S             G+++L  L ++ N  +      
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 1   MTALESLDLSFNRL-HGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45
           +  L+ L+++ N +   ++PE    +T L  L+LS N+++  I   
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCT 167

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 5e-05
 Identities = 8/39 (20%), Positives = 16/39 (41%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLR 39
           ++ L +L L+ N +         G+++L  L      L 
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 5e-05
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 1  MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
             L+ LDLS   +          ++ L++L L+ N ++  +  G     F  
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALG----AFSG 98

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.1 bits (94), Expect = 9e-05
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 8/55 (14%)

Query: 1   MTALESLDLSFNRLHGRIPEQ--LLGVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           +  LE LD   + L  ++ E    L +  L  L++S+   R     G     F+ 
Sbjct: 395 LEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRV-AFNG----IFNG 443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 1   MTALESLDLSFNRLH--GRIPEQLLGVTALASLNLSYNRLRGRIPRG 45
           + +LE LDLS N L   G   +   G T+L  L+LS+N +   +   
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 391

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 2  TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           + ++LDLSFN L             L  L+LS   ++  I  G     + +
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDG----AYQS 74

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 7/73 (9%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN 59
           +  LE LDLS+N +   + +Q   G+  L  L L  N+L+  +P G     FD  + +  
Sbjct: 346 LDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDG----IFDRLTSLQK 399

Query: 60  IHLCGEPLTVTCS 72
           I L   P   +C 
Sbjct: 400 IWLHTNPWDCSCP 412

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 6/76 (7%)

Query: 1   MTALESLDLSFNRLHG-RIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIG 58
           +  LE L L+   L G  +       +T+L  L L  N ++   P       F N     
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS----FFLNMRRFH 157

Query: 59  NIHLCGEPLTVTCSND 74
            + L    +   C  D
Sbjct: 158 VLDLTFNKVKSICEED 173

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
            T LE L L+ N ++ +I +    G+T L  LNLS N L G I        F+N
Sbjct: 298 FTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSR----MFEN 345

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 7/54 (12%)

Query: 2   TALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRG-RIPRGNQFNTFDN 53
           ++L  L L +N+   ++      G+  L  L L+   L G  +        F  
Sbjct: 79  SSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGN----FFKP 127

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 37.4 bits (87), Expect = 8e-04
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           +  L+ L +        I      G+++L  L L YN+   ++  G     F+ 
Sbjct: 53  LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETG----AFNG 101

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 7/73 (9%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN 59
           +  L+ L +  +++   I       + +L  +NL++N L   +P       F    ++  
Sbjct: 230 LMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT-LLPHD----LFTPLHHLER 283

Query: 60  IHLCGEPLTVTCS 72
           IHL   P    C 
Sbjct: 284 IHLHHNPWNCNCD 296

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRG 45
           +  L +L+L  NRL   IP      ++ L  L L  N +   IP  
Sbjct: 111 LANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSY 154

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 7/54 (12%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           +  LE L LS N +   I      G+  L +L L  NRL   IP G     F  
Sbjct: 87  LRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT-TIPNG----AFVY 134

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 4   LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLC 63
           ++ LDL  NR+   IP+ +  + AL  LN++ N+L+  +P G     FD  + +  I L 
Sbjct: 452 VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDG----VFDRLTSLQYIWLH 505

Query: 64  GEPLTVTCS 72
             P   TC 
Sbjct: 506 DNPWDCTCP 514

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45
           M  LE L +S NRL   +      +  L  L+LS+N L   + R 
Sbjct: 271 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERN 313

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRG 45
              ++ L + FN +   +P  +   V  L  L L  N L   +PRG
Sbjct: 92  AHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRG 135

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGN 46
              L +L +S N L  RI +      T+L +L LS NRL   +    
Sbjct: 140 TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL 184

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 7/54 (12%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           +  L  L L  N L   +P  +      L +L++S N L  RI       TF  
Sbjct: 116 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDD----TFQA 163

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLR 39
              L  +DLS+N L  +I       +  L  L +S NRL 
Sbjct: 247 YPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV 285

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRL 38
            T+L++L LS NRL   +   L+   +L   N+SYN L
Sbjct: 164 TTSLQNLQLSSNRLT-HVDLSLI--PSLFHANVSYNLL 198

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 7/54 (12%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
              +E L+L+  ++   I          +  L + +N +R  +P       F N
Sbjct: 68  FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPH----VFQN 115

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 3/46 (6%)

Query: 1  MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRG 45
          +   + +    + +  ++P  LL     +  LNL+  ++   I   
Sbjct: 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTY 87

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN 59
           + +L++L L  NR+   +      G++++  L+L  N++   +  G     FD    +  
Sbjct: 104 LESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPG----AFDTLHSLST 157

Query: 60  IHLCGEPLTVTCS 72
           ++L   P    C 
Sbjct: 158 LNLLANPFNCNCY 170

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.3 bits (103), Expect = 7e-06
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40
           ++ L SL L+ N+L     E + G+T L +L LS N +  
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN 46
           +T + SL+L  N         L  +T L  L ++ ++++   P  N
Sbjct: 131 LTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTPIAN 175

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
           +T L  L L+ + +    P  L  +T + SLNL  N     + 
Sbjct: 109 LTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS 149

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 37.5 bits (88), Expect = 6e-04
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN 46
           +T+L       N++    P  +  +T L SL +  N++    P  N
Sbjct: 198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLAN 241

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 2   TALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
            +L+ L L+ N+++  +       +  L  L+L  N+L+  I +G    TF     I  +
Sbjct: 104 FSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKG----TFSPLRAIQTM 157

Query: 61  HLCGEPLTVTCS 72
           HL   P    C 
Sbjct: 158 HLAQNPFICDCH 169

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 8e-06
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN 59
           +++L+ L +  +++   I      G+ +L  LNL++N L   +P       F    Y+  
Sbjct: 241 LSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHD----LFTPLRYLVE 294

Query: 60  IHLCGEPLTVTCS 72
           +HL   P    C 
Sbjct: 295 LHLHHNPWNCDCD 307

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.5 bits (95), Expect = 8e-05
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45
           +  L+ L+L    +   +P  L  +  L  L +S N     I  G
Sbjct: 195 LFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFP-EIRPG 236

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRG 45
           + +L +L+L  N L   IP      ++ L  L L  N +   IP  
Sbjct: 122 LASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSY 165

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 7/54 (12%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           +  LE L L  N +  +I      G+ +L +L L  N L   IP G     F+ 
Sbjct: 98  LHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSG----AFEY 145

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 9e-06
 Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 16/89 (17%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG--------------- 45
           +  L+ L+LS+N L         G+  +A ++L  N +   I                  
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRD 371

Query: 46  NQFNTFDNDSYIGNIHLCGEPLTVTCSND 74
           N   T      I +I L G  L      +
Sbjct: 372 NALTTIHFIPSIPDIFLSGNKLVTLPKIN 400

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQF 48
           +  L  LDL  ++++  +      G+  L  L L +  L   + +   F
Sbjct: 72  LPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.6 bits (95), Expect = 8e-05
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 16/88 (18%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP-------------RGNQ 47
           ++ L+ L L+ N L+   P     +TAL  L+L+ NRL   +                NQ
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEILDISRNQ 537

Query: 48  FNTFDNDS--YIGNIHLCGEPLTVTCSN 73
               + D    +  + +        C  
Sbjct: 538 LLAPNPDVFVSLSVLDITHNKFICECEL 565

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 1   MTALESLDLSFNRLHGRI--PEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIG 58
           +  L  L L F  L   +        + AL  L+LS N++R          +F   + + 
Sbjct: 96  LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP----SFGKLNSLK 151

Query: 59  NIHLCGEPLTVTCSNDGQP 77
           +I      + + C ++ +P
Sbjct: 152 SIDFSSNQIFLVCEHELEP 170

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGV-TALASLNLSYNRLRGRIPRGNQFNTFDN 53
           +  L+ L L+ NR      +Q      +L  L L  N L+        ++ F+ 
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG 478

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 15/77 (19%)

Query: 1  MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG--------------- 45
          +   E L LSFN +          +  L  L L        I +                
Sbjct: 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 46 NQFNTFDNDSYIGNIHL 62
          ++      D++ G  HL
Sbjct: 83 SKIYFLHPDAFQGLFHL 99

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 37.5 bits (87), Expect = 8e-04
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLR 39
           +  L+ L+L++N+++    E   G+  L  LNLSYN L 
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 1e-05
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45
           M  LE L +S NRL   +      +  L  L+LS+N L   + R 
Sbjct: 277 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERN 319

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRG 45
              ++ L + FN +   +P  +   V  L  L L  N L   +PRG
Sbjct: 98  AHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRG 141

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.5 bits (97), Expect = 4e-05
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGN 46
              L +L +S N L  RI +      T+L +L LS NRL   +    
Sbjct: 146 TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL 190

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.1 bits (96), Expect = 4e-05
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 7/54 (12%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           +  L  L L  N L   +P  +      L +L++S N L  RI       TF  
Sbjct: 122 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDD----TFQA 169

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLR 39
              L  +DLS+N L  +I       +  L  L +S NRL 
Sbjct: 253 YPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV 291

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 7/54 (12%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
              +E L+L+  ++   I          +  L + +N +R  +P       F N
Sbjct: 74  FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPH----VFQN 121

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRL 38
            T+L++L LS NRL   +   L+   +L   N+SYN L
Sbjct: 170 TTSLQNLQLSSNRLT-HVDLSLI--PSLFHANVSYNLL 204

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 21/87 (24%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP-------------RGNQ 47
           +  +  LDLS NRL   +P  L  +  L  L  S N L   +                N+
Sbjct: 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNR 519

Query: 48  FNTFDNDSYIGN------IHLCGEPLT 68
                    + +      ++L G  L 
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 7/72 (9%)

Query: 2   TALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
           T+L+ L L  N+L  R+PE     +T L +L L  N+L+ R+P G     FD+   +  +
Sbjct: 157 TSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEG----AFDSLEKLKML 210

Query: 61  HLCGEPLTVTCS 72
            L   P   TC+
Sbjct: 211 QLQENPWDCTCN 222

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN 59
           +  L  LDLS N LH  + E L   + AL  L L  N +   + R      F++ + +  
Sbjct: 87  VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRN----AFEDMAQLQK 140

Query: 60  IHLCGEPLT 68
           ++L    ++
Sbjct: 141 LYLSQNQIS 149

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 7/69 (10%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN 59
           +T L SL LS N L+  I  +    V  L  L+LS N L   +        F +   +  
Sbjct: 63  LTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEF----LFSDLQALEV 116

Query: 60  IHLCGEPLT 68
           + L    + 
Sbjct: 117 LLLYNNHIV 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 12/78 (15%)

Query: 1   MTALESLDLSFNRLHGRIPEQ----LLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSY 56
           M  L+ L LS N++  R P +       +  L  L+LS N+L+ ++P             
Sbjct: 135 MAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLT----DLQKLPA 188

Query: 57  IG--NIHLCGEPLTVTCS 72
                ++L   PL   C 
Sbjct: 189 WVKNGLYLHNNPLECDCK 206

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN 59
           +  L+ + L   +L   +      G+  L  LN+S N+L   +        F +   +  
Sbjct: 271 LLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEES----VFHSVGNLET 324

Query: 60  IHLCGEPLTVTCS 72
           + L   PL   C 
Sbjct: 325 LILDSNPLACDCR 337

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.9 bits (96), Expect = 5e-05
 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45
           +  L+ L++S       +    L    L SL++++  L   +P  
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYL 242

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 7/54 (12%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
              LE L+L+ N +   +       +  L +L L  NRL+  IP G     F  
Sbjct: 55  FPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLK-LIPLG----VFTG 102

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRG 45
           +  L+SL++  N L   I  +   G+ +L  L L    L   IP  
Sbjct: 127 LYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTE 170

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           +  L +L L  NRL   IP  +  G++ L  L++S N++   +        F +
Sbjct: 79  LFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDY----MFQD 126

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 7/54 (12%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           ++ L  LD+S N++   + + +   +  L SL +  N L   I        F  
Sbjct: 103 LSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YISHR----AFSG 150

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 3/46 (6%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRG 45
           + +LE L L    L   IP + L  +  L  L L +  +   I   
Sbjct: 151 LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN-AIRDY 194

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 2   TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQF 48
           T+L+ LDLSFN +   +    LG+  L  L+  ++ L+ ++   + F
Sbjct: 78  TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVF 122

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 7/54 (12%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           +  L  LDLS  +L  ++       +++L  LN+S+N     +        +  
Sbjct: 174 LRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF-SLDTF----PYKC 221

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           +++LE L ++ N         +   +  L  L+LS  +L  ++        F++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPT----AFNS 197

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 8/55 (14%)

Query: 1   MTALESLDLSFNRLHGRIPEQ--LLGVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           +  LE LD   + L  ++ E    L +  L  L++S+   R     G     F+ 
Sbjct: 100 LEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTR-VAFNG----IFNG 148

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 6/73 (8%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDN-DSYIGN 59
           +++L+ L++S N            + +L  L+ S N +     +        +  S +  
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQ----ELQHFPSSLAF 252

Query: 60  IHLCGEPLTVTCS 72
           ++L       TC 
Sbjct: 253 LNLTQNDFACTCE 265

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 1  MTALESLDLSFNRLHGR--IPEQLLGVTALASLNLSYNRLRGRIPRG 45
          +T L  L LS N L  +    +   G T+L  L+LS+N +   +   
Sbjct: 51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 96

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRG 45
           +  L  LD+S           +  G+++L  L ++ N  +      
Sbjct: 125 LRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN 59
           +  L  L LSFN +   +    L     L  L+L+ N+L  ++P G       +  YI  
Sbjct: 215 LNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGG-----LADHKYIQV 267

Query: 60  IHLCGEPLT 68
           ++L    ++
Sbjct: 268 VYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 2   TALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
            +L  L L  N++  ++    L G+  LA L LS+N +   +  G    +  N  ++  +
Sbjct: 192 PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVDNG----SLANTPHLREL 245

Query: 61  HLCGEPLT 68
           HL    L 
Sbjct: 246 HLNNNKLV 253

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 1   MTALESLDLSFNRLH-GRIPEQLL-GVTALASLNLSYNRLRGRIPRG 45
           +  +  ++L  N L    I      G+  L+ + ++   +   IP+G
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG 189

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 8/68 (11%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
           +  LE L LS N+L   +PE++     L  L +  N +  ++ +      F+  + +  +
Sbjct: 99  LVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKS----VFNGLNQMIVV 150

Query: 61  HLCGEPLT 68
            L   PL 
Sbjct: 151 ELGTNPLK 158

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG 45
           M  L  + ++   +   IP+ L    +L  L+L  N++  ++   
Sbjct: 170 MKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKIT-KVDAA 210

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 11/36 (30%), Positives = 21/36 (58%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYN 36
           +T+L  LD+S +     I  ++  +  + S++LSYN
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
           ++ LE L +    +       L G+T+L  L++S++     I 
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 7/54 (12%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           + AL+ L L  N L   +P+     +  L  L L  NR+   +P       F  
Sbjct: 128 LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPER----AFRG 175

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 7/54 (12%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           +  L +L L    L   +   L  G+ AL  L L  N L+  +P      TF +
Sbjct: 104 LGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDD----TFRD 151

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 7/54 (12%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           +  L  L L  NR+   +PE+   G+ +L  L L  NR+   +        F +
Sbjct: 152 LGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA-HVHPH----AFRD 199

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           +  LE LDLS N     +      G+  L +L+L    L+  +  G     F  
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPG----LFRG 127

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 40.6 bits (95), Expect = 7e-05
 Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 10/67 (14%)

Query: 2   TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP-------RGNQFNTFDND 54
             L +L++S N+L   +P    G+  L+  +     L             GNQ  +    
Sbjct: 81  PELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL 139

Query: 55  SYIGNIH 61
                + 
Sbjct: 140 --PPGLQ 144

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLR 39
            + L SL +  N+L  R+PE L+ +++  ++NL  N L 
Sbjct: 260 PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.1 bits (94), Expect = 9e-05
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 7/54 (12%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
              L++L L+ N ++  I E     + +L  L+LSYN L   +        F  
Sbjct: 75  CVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSS----WFKP 122

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
                ++ ++   L  ++ + L  ++ L  L  S N+L+  +P G     FD  + +  I
Sbjct: 253 KFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDG----IFDRLTSLQKI 306

Query: 61  HLCGEPLTVTCS 72
            L   P   +C 
Sbjct: 307 WLHTNPWDCSCP 318

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 8/74 (10%)

Query: 1   MTALESLDLSFNRLHGRIPEQ-LLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN 59
           +  L +L +  + L   +          L+ LNLS+N L   +       T    S +  
Sbjct: 55  LGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWK----TVQGLS-LQE 107

Query: 60  IHLCGEPLTVTCSN 73
           + L G PL  +C+ 
Sbjct: 108 LVLSGNPLHCSCAL 121

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 2   TALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
             LE L L+ N L   +P  LL G+  L +L L  N L   IP+G     F +   +   
Sbjct: 148 PKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKG----FFGSHL-LPFA 200

Query: 61  HLCGEP 66
            L G P
Sbjct: 201 FLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDN 53
           +  L +LDLS N+L   +P     + AL  L++S+NRL   +P G        
Sbjct: 76  LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLG----ALRG 122

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLR 39
           ++ L+ + +    L   +P+ +     L +L L+ N LR
Sbjct: 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR 140

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN 46
           +  L  ++ S N+L    P  L  +T L  + ++ N++    P  N
Sbjct: 67  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLAN 110

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP 43
           +T L  + ++ N++    P  L  +T L  L L  N++    P
Sbjct: 89  LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP 129

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN 46
           +T L+ L    N++       L  +T +  L+  +N++    P  N
Sbjct: 330 LTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLAN 373

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN 46
           +T LE LD+S N++       L  +T L SL  + N++    P G 
Sbjct: 176 LTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITPLGI 219

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 4/38 (10%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRL 38
            + L+ +D+  N L  ++P+      +L  +    N+L
Sbjct: 152 SSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQL 185

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 37.6 bits (87), Expect = 7e-04
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 4/39 (10%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLR 39
              LE ++   N+L   +PE     T+L  L++  N+L 
Sbjct: 139 PALLEYINADNNQLT-MLPELP---TSLEVLSVRNNQLT 173

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 37.3 bits (86), Expect = 9e-04
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLR 39
            T+LE L +  N+L   +PE      +L +L++S N L 
Sbjct: 159 PTSLEVLSVRNNQL-TFLPELP---ESLEALDVSTNLLE 193

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 37.6 bits (86), Expect = 8e-04
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 1   MTALESLDLSFNRLHGR----IPEQLLGVTALASLNLSYNRL 38
           +  LE++D+S   L       + + +  +  L  +N+ YN L
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.87
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.53
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.37
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.36
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.31
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.28
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.23
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.18
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.17
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.17
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.17
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.14
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.13
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.1
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.1
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.02
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.02
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.01
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.99
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	97.96
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.94
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.93
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.93
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.92
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.91
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.91
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.91
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.9
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.89
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.88
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.86
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.84
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.84
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.83
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.8
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.8
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.79
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.79
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.76
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.76
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.75
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.72
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.72
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.72
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.72
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.72
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.68
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.66
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.66
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.65
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.65
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.64
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.64
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.63
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	97.63
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.63
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.62
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.61
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.57
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.57
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.56
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.56
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.55
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.52
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.52
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.52
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.51
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.51
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.51
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.49
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.48
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.47
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.47
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.46
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.44
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.43
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.43
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.43
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.43
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.42
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.41
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.39
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.37
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.36
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.31
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.3
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.3
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.27
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.26
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.25
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.25
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.24
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.24
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.02
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	96.98
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	96.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	96.9
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.89
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	96.88
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.83
1o6v_A	466	Internalin A; bacterial infection, extracellular r	96.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.79
1o6v_A	466	Internalin A; bacterial infection, extracellular r	96.78
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	96.73
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	96.71
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	96.55
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.43
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	96.42
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	96.38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	96.2
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.19
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	96.02
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	95.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	95.54
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	95.49
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.84
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	94.74
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	94.7
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	94.52
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	94.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	94.17
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	93.76
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	93.35
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	93.34
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	92.18
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	90.7
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	87.81
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	86.05
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	83.94
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	80.76

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.49  E-value=2e-14  Score=123.13  Aligned_cols=72  Identities=43%  Similarity=0.759  Sum_probs=66.5

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccccCccCCCCCCCCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLCGEPLTVTCSN   73 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~lcg~~~~~~c~~   73 (149)
                      ++.|+.|||++|+|+|.||..+..++.|++||+++|+|+|+||...+|.++...+|.||++|||.|+. .|..
T Consensus       679 L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~  750 (768)
T 3rgz_A          679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDP  750 (768)
T ss_dssp             CTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCS
T ss_pred             CCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999876 7764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.07  E-value=1.2e-10  Score=89.93  Aligned_cols=70  Identities=43%  Similarity=0.783  Sum_probs=63.5

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccccCccCCCCCCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLCGEPLTVTC   71 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~lcg~~~~~~c   71 (149)
                      +++|+.|||++|+++|.+|..+..++.|+.|++++|+++|.+|....+..+....+.+|+.+||.|.. .|
T Consensus       243 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            36899999999999999999999999999999999999999999877788888889999999998764 35

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.87  E-value=2.2e-09  Score=92.77  Aligned_cols=60  Identities=30%  Similarity=0.312  Sum_probs=35.8

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccccCccCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLCGE   65 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~lcg~   65 (149)
                      ++|+.|||++|+|++-.|..+.  ++|+.||+++|+++|.+|..  +..+....+.||+..|..
T Consensus       504 ~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c  563 (844)
T 3j0a_A          504 TALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICEC  563 (844)
T ss_dssp             CSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSS
T ss_pred             hhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccc
Confidence            4556666666666554333333  55666666666666666653  345556667888888843

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.53  E-value=5.9e-08  Score=83.12  Aligned_cols=44  Identities=39%  Similarity=0.624  Sum_probs=29.2

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG   45 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~   45 (149)
                      +.|+.|||++|+|+|.||..+++++.|+.||+++|+++|.||..
T Consensus       656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~  699 (768)
T 3rgz_A          656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA  699 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred             ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence            45666666666666666666666666666666666666666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.49  E-value=2.4e-07  Score=71.75  Aligned_cols=63  Identities=24%  Similarity=0.221  Sum_probs=44.0

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccccCcc
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLC   63 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~lc   63 (149)
                      |++|+.|||++|+|+|..|..+.+++.|+.|+|++|+|++..|.......+....+.+|+.-|
T Consensus        55 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           55 LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             CCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             ccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccC
Confidence            467888888888888888888888888888888888888654443222224444455665444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.37  E-value=8.5e-07  Score=62.52  Aligned_cols=41  Identities=24%  Similarity=0.181  Sum_probs=25.2

Q ss_pred             CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      .|+.|+|++|+|++..|..+..++.|+.|+|++|++++..|
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~   71 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA   71 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh
Confidence            45666666666666556666666666666666666664433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.36  E-value=6e-07  Score=64.38  Aligned_cols=43  Identities=26%  Similarity=0.408  Sum_probs=27.1

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      +.|+.|||++|+|++.+|..+..++.|+.|++++|++++..|.
T Consensus        54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~   96 (192)
T 1w8a_A           54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK   96 (192)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSS
T ss_pred             CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHH
Confidence            4566666666666666666666666666666666666665543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.31  E-value=1.3e-06  Score=61.86  Aligned_cols=58  Identities=17%  Similarity=0.135  Sum_probs=40.7

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC-CcccCCCccccccc
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG-NQFNTFDNDSYIGN   59 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn   59 (149)
                      +.|+.|+|++|+|++..|..+..++.|+.|+|++|+|++..+.. ..+..+....+.+|
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            46788888888888877888888888888888888888744432 22334444445555

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.28  E-value=1.2e-06  Score=64.18  Aligned_cols=43  Identities=23%  Similarity=0.268  Sum_probs=25.8

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      ++|+.|+|++|.|++..|..+..++.|++|++++|++++..|.
T Consensus        81 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  123 (220)
T 2v70_A           81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND  123 (220)
T ss_dssp             TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT
T ss_pred             CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh
Confidence            4566666666666655555566666666666666666655553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.23  E-value=1.7e-06  Score=71.19  Aligned_cols=63  Identities=19%  Similarity=0.211  Sum_probs=36.4

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCc-c-cCCCccccccccCccC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQ-F-NTFDNDSYIGNIHLCG   64 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~-~-~~~~~~~~~gn~~lcg   64 (149)
                      ++|+.|+|++|+|++-.|..+..+++|+.||+++|++++..|.... + ..+....+.+|+.-|.
T Consensus       518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            4556666666666655555566666666666666666666555422 1 2344455677776664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.18  E-value=2.8e-06  Score=61.03  Aligned_cols=42  Identities=40%  Similarity=0.479  Sum_probs=26.9

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      ++|+.|||++|.|++-.|..+..++.|+.|++++|++++..|
T Consensus        54 ~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~   95 (193)
T 2wfh_A           54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP   95 (193)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCH
Confidence            456666666666665555566666666666666666666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.17  E-value=3.9e-06  Score=58.97  Aligned_cols=59  Identities=22%  Similarity=0.196  Sum_probs=41.5

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC-CcccCCCccccccc
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG-NQFNTFDNDSYIGN   59 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn   59 (149)
                      +++|++|+|++|+|++..|..+..++.|+.|++++|++++..|.. ..+..+....+.+|
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  110 (177)
T 2o6r_A           51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN  110 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC
Confidence            367888999999998655556788889999999999988766543 22334444445555

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.17  E-value=2.3e-06  Score=61.32  Aligned_cols=43  Identities=26%  Similarity=0.231  Sum_probs=32.7

Q ss_pred             CccEEeCCCCcCceeCCc-chhcCCCCCEEEccCCcCCCCCCCC
Q 041880            3 ALESLDLSFNRLHGRIPE-QLLGVTALASLNLSYNRLRGRIPRG   45 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP~-~l~~l~~L~~l~ls~N~l~G~iP~~   45 (149)
                      .|+.|+|++|++++..|. .+..++.|++|++++|++++.+|..
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~   73 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA   73 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhH
Confidence            577888888888765554 3778888888888888888877754

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.17  E-value=3e-06  Score=62.00  Aligned_cols=42  Identities=26%  Similarity=0.295  Sum_probs=23.7

Q ss_pred             CCccEEeCCCCcCceeCCc-chhcCCCCCEEEccCCcCCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPE-QLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~-~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      ++|+.|||++|.|+. +|. .+..+++|+.|++++|++++..|.
T Consensus        80 ~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N~l~~~~~~  122 (220)
T 2v9t_B           80 RSLNSLVLYGNKITE-LPKSLFEGLFSLQLLLLNANKINCLRVD  122 (220)
T ss_dssp             SSCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cCCCEEECCCCcCCc-cCHhHccCCCCCCEEECCCCCCCEeCHH
Confidence            456666666666663 333 345566666666666666655443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.14  E-value=4.1e-06  Score=59.26  Aligned_cols=62  Identities=19%  Similarity=0.227  Sum_probs=34.5

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC-CcccCCCccccccccCcc
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG-NQFNTFDNDSYIGNIHLC   63 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn~~lc   63 (149)
                      ++|+.|||++|+|++-.|..+..++.|+.|+|++|++++..|.. ..+..+....+.+|+.-|
T Consensus        57 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           57 VNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             cCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            45667777777776533333566777777777777776544331 123344444455554443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.13  E-value=1.8e-06  Score=65.78  Aligned_cols=62  Identities=31%  Similarity=0.364  Sum_probs=47.4

Q ss_pred             CCCccEEeCCCCcCce--eCCcchhcCCCCCEEEccCCcCCCCCCCCCccc--CCCccccccccCccC
Q 041880            1 MTALESLDLSFNRLHG--RIPEQLLGVTALASLNLSYNRLRGRIPRGNQFN--TFDNDSYIGNIHLCG   64 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G--~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~--~~~~~~~~gn~~lcg   64 (149)
                      ++.|+.|||++|+|++  .+|..+..+++|+.|+|++|++++. ..-..+.  .+....+.||+ +|+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Np-l~~  234 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNS-LCD  234 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTST-TGG
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCc-Ccc
Confidence            5789999999999999  8888899999999999999999985 1111122  44455667774 554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.11  E-value=5.1e-06  Score=58.45  Aligned_cols=64  Identities=23%  Similarity=0.270  Sum_probs=44.2

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC-CcccCCCccccccccCccC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG-NQFNTFDNDSYIGNIHLCG   64 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn~~lcg   64 (149)
                      +++|+.|||++|+|++-.|..+..++.|+.|+|++|++++..|.. ..+..+....+.+|+.-|.
T Consensus        53 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             cccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            457888888888888655555678888888888888888755542 2334555556677765554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.10  E-value=3.7e-06  Score=65.02  Aligned_cols=58  Identities=19%  Similarity=0.127  Sum_probs=45.9

Q ss_pred             CCccEEeCCC-CcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC-CcccCCCccccccc
Q 041880            2 TALESLDLSF-NRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG-NQFNTFDNDSYIGN   59 (149)
Q Consensus         2 ~~L~~LdLs~-N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn   59 (149)
                      ++|+.|+|++ |+|++-.|..+..++.|+.|+|++|+|+|..|.. ..+..+....+.+|
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            5699999996 9999888889999999999999999999988764 22334444445555

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.10  E-value=6.2e-06  Score=60.61  Aligned_cols=41  Identities=29%  Similarity=0.344  Sum_probs=21.1

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      ++|+.|||++|+|++-.|..+..++.|+.|++++|+++ .+|
T Consensus        88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp  128 (229)
T 3e6j_A           88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELP  128 (229)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCC
T ss_pred             CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccC
Confidence            34555555555555433334455555555555555555 444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.09  E-value=6.4e-06  Score=63.73  Aligned_cols=43  Identities=19%  Similarity=0.176  Sum_probs=26.7

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG   45 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~   45 (149)
                      ++|+.|+|++|.+++ +|..+..+++|+.|++++|++.+.+|..
T Consensus       206 ~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~  248 (328)
T 4fcg_A          206 QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPI  248 (328)
T ss_dssp             TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCC
T ss_pred             CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHH
Confidence            456666666666663 5555666666666666666666666653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.06  E-value=8.7e-06  Score=61.10  Aligned_cols=40  Identities=35%  Similarity=0.447  Sum_probs=19.4

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGR   41 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~   41 (149)
                      ++|+.|+|++|++++..|..+..++.|+.|++++|++++.
T Consensus       133 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  172 (272)
T 3rfs_A          133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL  172 (272)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence            3445555555555543333444455555555555555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.02  E-value=1.3e-05  Score=57.60  Aligned_cols=42  Identities=31%  Similarity=0.286  Sum_probs=26.9

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      ++|++|||++|++++..|..+..++.|++|++++|++++..|
T Consensus        76 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  117 (208)
T 2o6s_A           76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD  117 (208)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCH
Confidence            456677777777765444445666777777777776665444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.02  E-value=1.1e-05  Score=64.16  Aligned_cols=39  Identities=36%  Similarity=0.562  Sum_probs=19.5

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      ++|+.|||++|++++..|..+..++.|++|++++|++++
T Consensus       347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  385 (455)
T 3v47_A          347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS  385 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ccCCEEECCCCcccccChhhccccccccEEECCCCcccc
Confidence            344455555555554444445555555555555555544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.01  E-value=1.1e-05  Score=59.72  Aligned_cols=42  Identities=29%  Similarity=0.253  Sum_probs=22.2

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      ++|+.|+|++|+|++-.|..+..++.|+.|++++|++++..|
T Consensus       107 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  148 (251)
T 3m19_A          107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA  148 (251)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence            445555566655554333344555555555555555554433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.99  E-value=4.2e-06  Score=64.24  Aligned_cols=45  Identities=31%  Similarity=0.638  Sum_probs=33.5

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG   45 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~   45 (149)
                      +++|++|||++|.++|.+|..+..+++|++|++++|+++|.+|..
T Consensus       124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~  168 (313)
T 1ogq_A          124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS  168 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred             CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH
Confidence            356777777777777777777777777777777777777777753

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=97.96  E-value=8.3e-06  Score=63.09  Aligned_cols=62  Identities=21%  Similarity=0.194  Sum_probs=49.1

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCC-cccCCCccccccccCc
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN-QFNTFDNDSYIGNIHL   62 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~l   62 (149)
                      +++|+.|+|++|++.+.+|..++.++.|+.|++++|++.+.+|... .+..+....+.+|..+
T Consensus       228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  290 (328)
T 4fcg_A          228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL  290 (328)
T ss_dssp             CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred             CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence            4689999999999999999999999999999999999999999753 2334444556666433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.94  E-value=6.4e-06  Score=57.29  Aligned_cols=39  Identities=36%  Similarity=0.458  Sum_probs=22.6

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      ++|+.|||++|.+++.+|..+..++.|+.|++++|++++
T Consensus        71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  109 (168)
T 2ell_A           71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD  109 (168)
T ss_dssp             SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS
T ss_pred             CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc
Confidence            455556666666655555555555666666666665554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.93  E-value=1e-05  Score=67.40  Aligned_cols=57  Identities=26%  Similarity=0.342  Sum_probs=43.5

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccc
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN   59 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn   59 (149)
                      +++|+.|||++|+|+ .||..++.+++|+.|+|++|++++ +|.-..+..+....+.+|
T Consensus       462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNN  518 (567)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSS
T ss_pred             cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCCC
Confidence            467889999999998 899999999999999999999988 673333344444455555

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.93  E-value=2e-05  Score=64.36  Aligned_cols=43  Identities=26%  Similarity=0.372  Sum_probs=23.8

Q ss_pred             CCccEEeCCCCcCc-eeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880            2 TALESLDLSFNRLH-GRIPEQLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         2 ~~L~~LdLs~N~L~-G~iP~~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      ++|+.|+|++|.++ +.+|..+..+++|+.|++++|++++..|.
T Consensus       445 ~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~  488 (570)
T 2z63_A          445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT  488 (570)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred             CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh
Confidence            34555555555554 45555555555555555555555555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.92  E-value=1.7e-05  Score=56.85  Aligned_cols=57  Identities=19%  Similarity=0.180  Sum_probs=41.7

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCC-cccCCCccccccc
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN-QFNTFDNDSYIGN   59 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   59 (149)
                      +.|+.|+|++|+|+ .||..+..++.|+.|++++|++++..|... .+..+....+.+|
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            46889999999998 888889999999999999999988666431 2223333444444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.91  E-value=9.8e-06  Score=67.54  Aligned_cols=40  Identities=30%  Similarity=0.416  Sum_probs=31.8

Q ss_pred             CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC
Q 041880            3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG   45 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~   45 (149)
                      .|+.|+|++|.|++ +|. ++.++.|+.|+|++|+++ .+|..
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~  481 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPA  481 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGG
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchh
Confidence            46788888888886 776 888888888888888888 77753

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.91  E-value=9e-06  Score=66.29  Aligned_cols=62  Identities=24%  Similarity=0.321  Sum_probs=46.1

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCC-cccCCCccccccccCccC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN-QFNTFDNDSYIGNIHLCG   64 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg   64 (149)
                      +++|+.|||++|.|++ +|..+..++.|+.|++++|++++ +|... .+..+....+.+|+..|+
T Consensus       190 l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~  252 (487)
T 3oja_A          190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG  252 (487)
T ss_dssp             CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred             CCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence            4678889999999986 45568889999999999999986 66542 233555566778877765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.91  E-value=1.9e-05  Score=57.63  Aligned_cols=59  Identities=15%  Similarity=0.205  Sum_probs=44.1

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCC-cccCCCccccccc
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN-QFNTFDNDSYIGN   59 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   59 (149)
                      +++|+.|+|++|.+++..|..+..++.|++|++++|++++..|... .+..+....+.+|
T Consensus        56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  115 (220)
T 2v70_A           56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN  115 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS
T ss_pred             CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC
Confidence            4678999999999998877789999999999999999988766421 2233344444455

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.91  E-value=1.3e-05  Score=66.16  Aligned_cols=42  Identities=31%  Similarity=0.095  Sum_probs=21.4

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      ++|+.|||++|++++.+|..+..++.|+.|++++|++++.+|
T Consensus       473 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  514 (606)
T 3vq2_A          473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS  514 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG
T ss_pred             CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH
Confidence            345555555555555555555555555555555555554444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.90  E-value=2.3e-05  Score=54.92  Aligned_cols=58  Identities=19%  Similarity=0.168  Sum_probs=43.8

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC-CcccCCCccccccc
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG-NQFNTFDNDSYIGN   59 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn   59 (149)
                      ++|+.|++++|++++..|..+..++.|++|++++|++++..|.. ..+..+....+.+|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            57899999999999766667899999999999999998765543 23334444455555

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.89  E-value=1.2e-05  Score=67.53  Aligned_cols=59  Identities=12%  Similarity=0.089  Sum_probs=45.2

Q ss_pred             CCCccEEeCCCCcCcee-----------------CCcchh--cCCCCCEEEccCCcCCCCCCCCC-cccCCCccccccc
Q 041880            1 MTALESLDLSFNRLHGR-----------------IPEQLL--GVTALASLNLSYNRLRGRIPRGN-QFNTFDNDSYIGN   59 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~-----------------iP~~l~--~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   59 (149)
                      +++|++|||++|+|+|+                 ||..++  +++.|++|++++|++.|.+|... .+..+....+.+|
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  283 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN  283 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence            46789999999999986                 999988  99999999999999999999642 2233333344444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.88  E-value=5.7e-06  Score=56.40  Aligned_cols=41  Identities=29%  Similarity=0.268  Sum_probs=27.4

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      ++|+.|++++|.+++.  ..+..++.|++|++++|++++.+|.
T Consensus        42 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~   82 (149)
T 2je0_A           42 EELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV   82 (149)
T ss_dssp             TTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH
T ss_pred             CCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH
Confidence            4566777777777654  5566677777777777777666554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.86  E-value=1.2e-05  Score=60.49  Aligned_cols=43  Identities=28%  Similarity=0.272  Sum_probs=22.6

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      ++|+.|+|++|.+++..+..+..++.|+.|++++|.+++..|.
T Consensus       153 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  195 (285)
T 1ozn_A          153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH  195 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             CCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHh
Confidence            3455555555555543333455555555555555555554443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.86  E-value=3.1e-05  Score=56.51  Aligned_cols=39  Identities=31%  Similarity=0.450  Sum_probs=28.5

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      ++|+.|+|++|++++..|..+..++.|++|+|++|+++.
T Consensus        56 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~   94 (220)
T 2v9t_B           56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE   94 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC
T ss_pred             CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc
Confidence            467777777777777667777777777777777777774

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.84  E-value=2.8e-05  Score=58.94  Aligned_cols=59  Identities=25%  Similarity=0.229  Sum_probs=41.1

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC-CcccCCCccccccc
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG-NQFNTFDNDSYIGN   59 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn   59 (149)
                      +++|+.|||++|.+++..|..+..++.|+.|++++|++++..+.. ..+..+....+.+|
T Consensus       174 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN  233 (306)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred             CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence            357888888888888888888888888888888888887754422 11223334444555

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.84  E-value=2.5e-05  Score=65.55  Aligned_cols=58  Identities=24%  Similarity=0.327  Sum_probs=42.1

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEc------cCCcCCCCCCCCC-cccCCCccccccc
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNL------SYNRLRGRIPRGN-QFNTFDNDSYIGN   59 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~l------s~N~l~G~iP~~~-~~~~~~~~~~~gn   59 (149)
                      +++|+.|||++|+|++ ||..+..++.|+.|++      ++|++.+.+|... .+..+....+.+|
T Consensus       512 l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  576 (636)
T 4eco_A          512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN  576 (636)
T ss_dssp             CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred             CCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence            4678888888888887 8888888888888888      4577888888653 2233444445555

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.83  E-value=2.6e-05  Score=63.49  Aligned_cols=62  Identities=19%  Similarity=0.256  Sum_probs=41.5

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC-CcccCCCccccccccCccC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG-NQFNTFDNDSYIGNIHLCG   64 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn~~lcg   64 (149)
                      +++|+.|||++|+|+ .||. ...++.|+.|++++|++++.+|.. ..+..+....+.+|+..|.
T Consensus       450 l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  512 (549)
T 2z81_A          450 LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  512 (549)
T ss_dssp             CTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred             CChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence            356777777777777 6776 466778888888888888776653 2334445555667765554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.80  E-value=3.5e-05  Score=61.55  Aligned_cols=63  Identities=14%  Similarity=0.094  Sum_probs=34.6

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC-CcccCCCccccccccCccC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG-NQFNTFDNDSYIGNIHLCG   64 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn~~lcg   64 (149)
                      ++|+.|+|++|++++..|..+..+++|+.|+|++|++++..+.. ..+..+....+.+|+..|.
T Consensus       231 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  294 (440)
T 3zyj_A          231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN  294 (440)
T ss_dssp             TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred             ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence            34555555555555555555556666666666666666543332 1223444455677776664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.80  E-value=2.4e-05  Score=59.71  Aligned_cols=42  Identities=38%  Similarity=0.538  Sum_probs=21.4

Q ss_pred             CCccEEeCCCCcCceeCCcchhcC---CCCCEEEccCCcCCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGV---TALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l---~~L~~l~ls~N~l~G~iP~   44 (149)
                      ++|++|||++|+|++.+|..+..+   +.|+.|++++|+++ .+|.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~  268 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPK  268 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCS
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhh
Confidence            345555555555555555444444   35555555555555 4444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.79  E-value=3.5e-05  Score=52.38  Aligned_cols=57  Identities=16%  Similarity=0.114  Sum_probs=44.4

Q ss_pred             CCccEEeCCCCcCc-eeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccc
Q 041880            2 TALESLDLSFNRLH-GRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN   59 (149)
Q Consensus         2 ~~L~~LdLs~N~L~-G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn   59 (149)
                      ++|+.|++++|.++ |.+|..+..++.|+.|++++|++++. +.-..+..+....+.+|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n   74 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN   74 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC
Confidence            46899999999999 99999999999999999999999886 33223334444444444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.79  E-value=3.2e-05  Score=53.68  Aligned_cols=57  Identities=18%  Similarity=0.103  Sum_probs=41.9

Q ss_pred             CCccEEeCCCCcCc-eeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccc
Q 041880            2 TALESLDLSFNRLH-GRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN   59 (149)
Q Consensus         2 ~~L~~LdLs~N~L~-G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn   59 (149)
                      +.|+.|+|++|+++ |.+|..+..++.|+.|++++|.+++. +.-..+..+....+.+|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N   81 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSEN   81 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCC
Confidence            56889999999998 88998888899999999999988876 33223334444444444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.78  E-value=3.9e-05  Score=61.50  Aligned_cols=63  Identities=17%  Similarity=0.094  Sum_probs=33.1

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCC-cccCCCccccccccCccC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN-QFNTFDNDSYIGNIHLCG   64 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg   64 (149)
                      ++|+.|+|++|++++..|..+..+++|+.|++++|++++..+... .+..+....+.+|+.-|.
T Consensus       242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred             cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence            345555555555555555555556666666666666654333221 123344455667765554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.76  E-value=1.9e-05  Score=56.47  Aligned_cols=44  Identities=23%  Similarity=0.258  Sum_probs=36.2

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      ++.|+.|++++|.+++..|..+..++.|+.|++++|++++..|.
T Consensus        87 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~  130 (197)
T 4ezg_A           87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT  130 (197)
T ss_dssp             CTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHH
T ss_pred             CCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHH
Confidence            46788888888888888888888888888888888888876554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.76  E-value=5.1e-05  Score=54.43  Aligned_cols=59  Identities=25%  Similarity=0.233  Sum_probs=42.0

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC-CcccCCCccccccc
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG-NQFNTFDNDSYIGN   59 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn   59 (149)
                      +++|+.|+|++|++++..+..+..++.|++|++++|++++..+.. ..+..+....+.+|
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  110 (208)
T 2o6s_A           51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN  110 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC
Confidence            467899999999999655556788999999999999998655542 22334444444444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.75  E-value=4.9e-05  Score=56.21  Aligned_cols=40  Identities=30%  Similarity=0.379  Sum_probs=21.7

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGR   41 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~   41 (149)
                      ++|+.|+|++|.|++..|..+..++.|++|++++|++++.
T Consensus        59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~   98 (251)
T 3m19_A           59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL   98 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred             ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc
Confidence            3455555555555554444555555555555555555543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.72  E-value=7e-05  Score=55.98  Aligned_cols=43  Identities=28%  Similarity=0.312  Sum_probs=29.2

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      +++|+.|+|++|.+++..+..+..++.|+.|++++|++++..|
T Consensus       132 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A          132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            3567777777777775444456777777777777777766444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.72  E-value=3.7e-05  Score=63.07  Aligned_cols=44  Identities=27%  Similarity=0.255  Sum_probs=33.0

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      +++|+.|||++|+|++.+|..+..+++|+.|+|++|++++..|.
T Consensus       493 l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~  536 (635)
T 4g8a_A          493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF  536 (635)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCG
T ss_pred             ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChh
Confidence            35677788888888777777777778888888888877776554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.72  E-value=3.6e-05  Score=54.03  Aligned_cols=37  Identities=19%  Similarity=0.256  Sum_probs=24.7

Q ss_pred             CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCC
Q 041880            3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGR   41 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~   41 (149)
                      +|+.|||++|.|++-  ..+..++.|++|++++|++++.
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~   79 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRI   79 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEE
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCccccc
Confidence            567777777777653  4566667777777777777643

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.72  E-value=1.7e-05  Score=65.51  Aligned_cols=44  Identities=27%  Similarity=0.291  Sum_probs=33.6

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      +++|+.|||++|++++.+|..+..++.|+.|++++|++++.+|.
T Consensus       475 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  518 (606)
T 3t6q_A          475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE  518 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG
T ss_pred             CCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChh
Confidence            35677788888888877777777788888888888877777664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.72  E-value=7.2e-05  Score=56.83  Aligned_cols=39  Identities=31%  Similarity=0.289  Sum_probs=22.1

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      ++|+.|+|++|+|++-.|..+..++.|+.|++++|++++
T Consensus       124 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G          124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (290)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence            455666666666664444444555666666666666553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.71  E-value=2.2e-05  Score=68.62  Aligned_cols=45  Identities=16%  Similarity=0.126  Sum_probs=36.6

Q ss_pred             CCCccEEeCCCCcCce-----------------eCCcchh--cCCCCCEEEccCCcCCCCCCCC
Q 041880            1 MTALESLDLSFNRLHG-----------------RIPEQLL--GVTALASLNLSYNRLRGRIPRG   45 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G-----------------~iP~~l~--~l~~L~~l~ls~N~l~G~iP~~   45 (149)
                      |++|+.|||++|+|+|                 .||..++  ++++|+.|++++|++.|.+|..
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~  510 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF  510 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH
Confidence            4678888888888888                 4888877  8888888888888888888853

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.70  E-value=6.5e-05  Score=55.06  Aligned_cols=40  Identities=25%  Similarity=0.196  Sum_probs=29.8

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGR   41 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~   41 (149)
                      ++|+.|+|++|++++..|..+..++.|+.|++++|++++.
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i   79 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL   79 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc
Confidence            4577788888888877777777777788888887777543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.68  E-value=3.6e-05  Score=65.85  Aligned_cols=39  Identities=36%  Similarity=0.525  Sum_probs=18.4

Q ss_pred             CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      .|++|+|++|.|+ .||..++.++.|+.|+|++|.|+ .||
T Consensus       248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp  286 (727)
T 4b8c_D          248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLP  286 (727)
T ss_dssp             SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCC
T ss_pred             CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccC
Confidence            3444444444444 44444444444444444444444 444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.66  E-value=8.4e-05  Score=55.66  Aligned_cols=59  Identities=24%  Similarity=0.192  Sum_probs=42.4

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC-CcccCCCccccccc
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG-NQFNTFDNDSYIGN   59 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn   59 (149)
                      +++|+.|+|++|++++..|..+..++.|++|++++|++++..|.. ..+..+....+.+|
T Consensus       108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  167 (272)
T 3rfs_A          108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN  167 (272)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC
Confidence            467889999999998777777888899999999999988766543 22334444444444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.66  E-value=4.1e-05  Score=62.08  Aligned_cols=44  Identities=27%  Similarity=0.206  Sum_probs=31.8

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG   45 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~   45 (149)
                      ++.|++|||++|++++..|..+..++.|++||+++|+++ .||..
T Consensus        44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~   87 (520)
T 2z7x_B           44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH   87 (520)
T ss_dssp             CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC
T ss_pred             cccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc
Confidence            356777777777777777777777777777777777776 46654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.65  E-value=2.6e-05  Score=59.59  Aligned_cols=57  Identities=30%  Similarity=0.341  Sum_probs=44.4

Q ss_pred             CCCccEEeCCCCcCceeCC-cchhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccc
Q 041880            1 MTALESLDLSFNRLHGRIP-EQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN   59 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP-~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn   59 (149)
                      +++|+.|||++|.+++.+| ..+..++.|+.|++++|+++ .+|.... ..+....+.+|
T Consensus       227 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-~~L~~L~Ls~N  284 (312)
T 1wwl_A          227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-AKLSVLDLSYN  284 (312)
T ss_dssp             TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-SEEEEEECCSS
T ss_pred             CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-CCceEEECCCC
Confidence            4689999999999999886 45667899999999999998 8887643 34444445555

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.65  E-value=5e-05  Score=60.99  Aligned_cols=63  Identities=21%  Similarity=0.167  Sum_probs=38.1

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC-CcccCCCccccccccCccC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG-NQFNTFDNDSYIGNIHLCG   64 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn~~lcg   64 (149)
                      ++|+.|+|++|++++..|..+..+++|+.|++++|++++..+.. ..+..+....+.+|+..|.
T Consensus       272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            45666777777777666777777777777777777777644322 1122334445566655443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.64  E-value=8.5e-05  Score=61.06  Aligned_cols=61  Identities=28%  Similarity=0.472  Sum_probs=39.8

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC--CcccCCCccccccccCccC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG--NQFNTFDNDSYIGNIHLCG   64 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~--~~~~~~~~~~~~gn~~lcg   64 (149)
                      ++|+.|||++|+|+ .||..+..++.|+.|++++|+++ .+|..  ..+..+....+.+|+..|.
T Consensus       450 ~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred             CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence            36777777777777 67777777788888888888887 46654  1223344445566665553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.64  E-value=9e-05  Score=60.07  Aligned_cols=60  Identities=28%  Similarity=0.526  Sum_probs=36.5

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC--CcccCCCccccccccCcc
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG--NQFNTFDNDSYIGNIHLC   63 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~--~~~~~~~~~~~~gn~~lc   63 (149)
                      ++|+.|||++|+++ .||..+..++.|+.|++++|+++ .+|..  ..+..+....+.+|+..|
T Consensus       421 ~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          421 PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence            35667777777776 67776667777777777777776 45553  122233444455665544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.63  E-value=6.4e-05  Score=64.29  Aligned_cols=57  Identities=26%  Similarity=0.324  Sum_probs=42.9

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCC-cccCCCccccccc
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN-QFNTFDNDSYIGN   59 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   59 (149)
                      |++|+.|||++|.|+ .||..++.|+.|++|+|++|.|+ .||... .+..+....+.+|
T Consensus       269 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          269 LSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             GTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred             CCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence            467899999999999 89999999999999999999886 778652 2223333344444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=97.63  E-value=3.6e-05  Score=59.20  Aligned_cols=40  Identities=30%  Similarity=0.334  Sum_probs=20.6

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      ++|+.|++++|.+++ + ..+..+++|+.|++++|++.+..|
T Consensus       265 ~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~  304 (347)
T 4fmz_A          265 TKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDM  304 (347)
T ss_dssp             TTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGH
T ss_pred             CCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcCh
Confidence            345555555555554 2 234555555555555555554443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.63  E-value=5.1e-05  Score=57.97  Aligned_cols=59  Identities=17%  Similarity=0.120  Sum_probs=43.0

Q ss_pred             CCCccEEeCCCCcCce--eCCcc-hhcCCCCCEEEccCCcCCCCCCCC--CcccCCCccccccc
Q 041880            1 MTALESLDLSFNRLHG--RIPEQ-LLGVTALASLNLSYNRLRGRIPRG--NQFNTFDNDSYIGN   59 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G--~iP~~-l~~l~~L~~l~ls~N~l~G~iP~~--~~~~~~~~~~~~gn   59 (149)
                      +++|+.|+|++|.+++  .+|.. +..++.|+.|++++|++++.+|..  .....+....+.+|
T Consensus       200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N  263 (312)
T 1wwl_A          200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT  263 (312)
T ss_dssp             CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS
T ss_pred             CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC
Confidence            4689999999999983  45544 357899999999999999987532  22334444455555

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.62  E-value=6.5e-05  Score=61.74  Aligned_cols=56  Identities=27%  Similarity=0.227  Sum_probs=34.2

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccc
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN   59 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn   59 (149)
                      +.|++|||++|++++..|..+..++.|++||+++|+++ .+|.. .+..+....+.+|
T Consensus        76 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~Ls~N  131 (562)
T 3a79_B           76 SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC-PMASLRHLDLSFN  131 (562)
T ss_dssp             TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC-CCTTCSEEECCSS
T ss_pred             CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc-ccccCCEEECCCC
Confidence            56677777777777666666777777777777777766 46654 3333333333333

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.61  E-value=9.5e-05  Score=52.73  Aligned_cols=59  Identities=20%  Similarity=0.211  Sum_probs=45.6

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccc
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN   59 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn   59 (149)
                      +++|+.|+|++|.+++.+|..+..++.|+.|++++|.+-+.+|.-..+..+....+.+|
T Consensus       111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n  169 (197)
T 4ezg_A          111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD  169 (197)
T ss_dssp             CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTB
T ss_pred             CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCC
Confidence            46899999999999998999999999999999999986666764333344444445555

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.57  E-value=0.0001  Score=64.50  Aligned_cols=58  Identities=22%  Similarity=0.347  Sum_probs=43.9

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccC------CcCCCCCCCCC-cccCCCccccccc
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSY------NRLRGRIPRGN-QFNTFDNDSYIGN   59 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~------N~l~G~iP~~~-~~~~~~~~~~~gn   59 (149)
                      +++|+.|||++|+|++ ||..+..+++|+.|++++      |++.+.+|... .+..+....+.+|
T Consensus       752 l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N  816 (876)
T 4ecn_A          752 LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN  816 (876)
T ss_dssp             CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred             CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC
Confidence            4678899999999987 898899999999998876      78888888653 2334444455555

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.57  E-value=4.4e-05  Score=59.13  Aligned_cols=62  Identities=23%  Similarity=0.366  Sum_probs=45.1

Q ss_pred             CCccEEeCCCCcCce-------------------------------eCCcchhcCCCCCEEEccCCcCCCCCCCCC--cc
Q 041880            2 TALESLDLSFNRLHG-------------------------------RIPEQLLGVTALASLNLSYNRLRGRIPRGN--QF   48 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G-------------------------------~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~--~~   48 (149)
                      ++|+.|||++|.+++                               .+|..+..+++|+.|++++|+++ .+|...  .+
T Consensus       222 ~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l  300 (353)
T 2z80_A          222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRL  300 (353)
T ss_dssp             TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred             ccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcC
Confidence            567788888888776                               35666788899999999999998 677642  34


Q ss_pred             cCCCccccccccCccC
Q 041880           49 NTFDNDSYIGNIHLCG   64 (149)
Q Consensus        49 ~~~~~~~~~gn~~lcg   64 (149)
                      ..+....+.+|+..|.
T Consensus       301 ~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          301 TSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             TTCCEEECCSSCBCCC
T ss_pred             CCCCEEEeeCCCccCc
Confidence            4555566777766554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.56  E-value=3.6e-05  Score=64.42  Aligned_cols=38  Identities=26%  Similarity=0.377  Sum_probs=23.5

Q ss_pred             CCccEEeCCCCcCceeCCc-chhcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGRIPE-QLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~-~l~~l~~L~~l~ls~N~l~G   40 (149)
                      ++|+.|||++|+++ .||. .+..++.|+.|++++|++++
T Consensus       536 ~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~  574 (680)
T 1ziw_A          536 SHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNT  574 (680)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCc
Confidence            45666666666666 4554 35666666666666666664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.56  E-value=2.2e-05  Score=63.52  Aligned_cols=40  Identities=43%  Similarity=0.605  Sum_probs=28.4

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC--CCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG--RIPRG   45 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G--~iP~~   45 (149)
                      ++|+.||+++|+++ .+|.   .+++|++|++++|+++|  .+|..
T Consensus       337 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~  378 (454)
T 1jl5_A          337 PRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPES  378 (454)
T ss_dssp             TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred             CcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHH
Confidence            46777777777777 4666   36777777777777777  66654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.55  E-value=8.7e-05  Score=56.55  Aligned_cols=54  Identities=41%  Similarity=0.555  Sum_probs=42.5

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC-CCCCCCcccCCCcccccccc
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG-RIPRGNQFNTFDNDSYIGNI   60 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G-~iP~~~~~~~~~~~~~~gn~   60 (149)
                      ++|++|+|++|+|+ .||..+.  +.|+.||+++|++++ +++.  .+..+....+.+|+
T Consensus       251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~L~~N~  305 (310)
T 4glp_A          251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPD--ELPEVDNLTLDGNP  305 (310)
T ss_dssp             TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTT--SCCCCSCEECSSTT
T ss_pred             CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhh--hCCCccEEECcCCC
Confidence            58999999999999 8998885  799999999999998 4543  34455555566663

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.52  E-value=0.00015  Score=55.59  Aligned_cols=43  Identities=26%  Similarity=0.278  Sum_probs=32.0

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      ++.|+.|+|++|.+++..|..+..++.|++|++++|++. .+|.
T Consensus        77 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~  119 (332)
T 2ft3_A           77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPP  119 (332)
T ss_dssp             CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCS
T ss_pred             CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCc
Confidence            356777888888887777777777888888888887776 4554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.52  E-value=0.00018  Score=55.12  Aligned_cols=58  Identities=24%  Similarity=0.275  Sum_probs=40.5

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCC-cccCCCccccccc
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN-QFNTFDNDSYIGN   59 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   59 (149)
                      +++|+.|+|++|.+++..|..+..+++|+.|++++|+++ .+|... .+..+....+.+|
T Consensus       216 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N  274 (332)
T 2ft3_A          216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN  274 (332)
T ss_dssp             CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSS
T ss_pred             CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCC
Confidence            357788888888888777777888888888888888887 677642 2223334444444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.52  E-value=0.00011  Score=63.43  Aligned_cols=45  Identities=22%  Similarity=0.324  Sum_probs=33.2

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG   45 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~   45 (149)
                      ++.|+.|||++|++++..|..+..+++|++|++++|.+++.+|..
T Consensus        72 L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~  116 (844)
T 3j0a_A           72 LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD  116 (844)
T ss_dssp             CTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTT
T ss_pred             CCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccC
Confidence            356777777777777777777777777777777777777766653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.51  E-value=0.00013  Score=55.19  Aligned_cols=59  Identities=20%  Similarity=0.281  Sum_probs=46.6

Q ss_pred             CCCccEEeCCCCcCce-eCCcchhcCCCCCEEEccCCcCCCCCCCCC-cccCCCccccccc
Q 041880            1 MTALESLDLSFNRLHG-RIPEQLLGVTALASLNLSYNRLRGRIPRGN-QFNTFDNDSYIGN   59 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G-~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   59 (149)
                      +++|+.|+|++|.+++ .+|..+..++.|+.|++++|++++..|... .+..+....+.+|
T Consensus       149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  209 (306)
T 2z66_A          149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN  209 (306)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC
Confidence            4689999999999998 689999999999999999999998777542 2234444445555

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.51  E-value=0.00012  Score=58.18  Aligned_cols=43  Identities=37%  Similarity=0.365  Sum_probs=28.2

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      ++|+.|+|++|++++..|..+..++.|+.|++++|++.+..|.
T Consensus       299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  341 (455)
T 3v47_A          299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR  341 (455)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG
T ss_pred             CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh
Confidence            4566677777777666666666666677777766666555443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.51  E-value=8.5e-05  Score=61.25  Aligned_cols=43  Identities=23%  Similarity=0.237  Sum_probs=23.2

Q ss_pred             CCccEEeCCCCcCce-eCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880            2 TALESLDLSFNRLHG-RIPEQLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G-~iP~~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      ++|+.|++++|.+++ .+|..+..+++|+.|++++|++++.+|.
T Consensus       448 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  491 (606)
T 3vq2_A          448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG  491 (606)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred             CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh
Confidence            345555555555555 2455555555555555555555554443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.49  E-value=7.5e-05  Score=60.80  Aligned_cols=40  Identities=28%  Similarity=0.358  Sum_probs=22.7

Q ss_pred             CCccEEeCCCCcCceeCCcchh-cCCCCCEEEccCCcCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLL-GVTALASLNLSYNRLRGR   41 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~-~l~~L~~l~ls~N~l~G~   41 (149)
                      ++|+.|||++|.|++.+|..+. .++.|+.|++++|.+++.
T Consensus       144 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            4555666666666665555554 455555555555555544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.48  E-value=0.00019  Score=54.44  Aligned_cols=41  Identities=37%  Similarity=0.470  Sum_probs=25.1

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      ++|+.|||++|+|+ .+|..+..++.|+.|++++|++++..|
T Consensus        77 ~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~  117 (290)
T 1p9a_G           77 PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL  117 (290)
T ss_dssp             TTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCS
T ss_pred             CcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCH
Confidence            45666666666665 566666666666666666666665443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.47  E-value=0.00012  Score=55.96  Aligned_cols=61  Identities=23%  Similarity=0.291  Sum_probs=39.7

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCC-cccCCCccccccccCcc
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN-QFNTFDNDSYIGNIHLC   63 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lc   63 (149)
                      +++|+.|||++|.+++ +|..+..++.|+.|++++|++++ +|... .+..+....+.+|+..|
T Consensus       190 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~  251 (317)
T 3o53_A          190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC  251 (317)
T ss_dssp             CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBH
T ss_pred             cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccC
Confidence            3567788888888874 55567788888888888888874 56532 22344444556665554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.47  E-value=0.00018  Score=55.02  Aligned_cols=38  Identities=29%  Similarity=0.339  Sum_probs=21.3

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLR   39 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~   39 (149)
                      +.|++|+|++|.+++..|..+..++.|++|++++|+++
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  113 (330)
T 1xku_A           76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK  113 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC
Confidence            34555555555555555555555555555555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.46  E-value=0.00012  Score=60.80  Aligned_cols=40  Identities=30%  Similarity=0.417  Sum_probs=33.5

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      ++.|+.|||++|.+++.+|..++.++.|+.|++++|.+++
T Consensus       253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  292 (597)
T 3oja_B          253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA  292 (597)
T ss_dssp             CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE
T ss_pred             CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC
Confidence            3678888888888888888888888888888888888877

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.44  E-value=0.00018  Score=56.14  Aligned_cols=42  Identities=38%  Similarity=0.301  Sum_probs=26.8

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      ++|+.|+|++|+|++-.|..+..++.|+.|+|++|++++..|
T Consensus        64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~  105 (361)
T 2xot_A           64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDE  105 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCH
Confidence            456666666666665555566666666667776666665443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.43  E-value=0.0005  Score=52.53  Aligned_cols=41  Identities=29%  Similarity=0.361  Sum_probs=25.7

Q ss_pred             CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      +|+.|+|++|.+++..|..+..++.|+.|++++|.+++..|
T Consensus       193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  233 (330)
T 1xku_A          193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN  233 (330)
T ss_dssp             TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT
T ss_pred             cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh
Confidence            45666666666666656666666666666666666665444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.43  E-value=0.0003  Score=52.46  Aligned_cols=38  Identities=21%  Similarity=0.201  Sum_probs=16.3

Q ss_pred             CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      +|+.|+|++|.+++..|..+..+++|++|++++|++.+
T Consensus        77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  114 (276)
T 2z62_A           77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS  114 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC
T ss_pred             CCCEEECCCCccCccChhhhcCCccccEEECCCCCccc
Confidence            34444444444444333444444444444444444433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.43  E-value=0.00026  Score=53.06  Aligned_cols=42  Identities=36%  Similarity=0.396  Sum_probs=20.0

Q ss_pred             CCccEEeCCCCc-CceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            2 TALESLDLSFNR-LHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         2 ~~L~~LdLs~N~-L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      ++|+.|||++|. +....|..+..++.|++|++++|++++..|
T Consensus        80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  122 (285)
T 1ozn_A           80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP  122 (285)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECH
Confidence            345555555554 333334444555555555555555544433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.43  E-value=9.6e-05  Score=51.77  Aligned_cols=38  Identities=21%  Similarity=0.220  Sum_probs=24.0

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCC-CCCEEEccCCcCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVT-ALASLNLSYNRLRGR   41 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~-~L~~l~ls~N~l~G~   41 (149)
                      .+|+.|+|++|+++ .+|. +..+. .|+.|++++|++++.
T Consensus        19 ~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~   57 (176)
T 1a9n_A           19 VRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL   57 (176)
T ss_dssp             TSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE
T ss_pred             CCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc
Confidence            45667777777776 4554 33333 777777777777653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.43  E-value=0.00016  Score=56.61  Aligned_cols=39  Identities=31%  Similarity=0.429  Sum_probs=30.0

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      ++|+.|||++|.+++.+|..+..++.|+.|++++|++++
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  286 (390)
T 3o6n_A          248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA  286 (390)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE
T ss_pred             CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc
Confidence            567777788887777777777777778888887777766

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.42  E-value=0.00011  Score=59.89  Aligned_cols=40  Identities=25%  Similarity=0.272  Sum_probs=18.5

Q ss_pred             CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCC
Q 041880            3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRI   42 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~i   42 (149)
                      .|++|||++|++++..|..+..++.|++|++++|++++..
T Consensus        51 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~   90 (549)
T 2z81_A           51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS   90 (549)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred             cccEEECCCCCcCccChhhccccccCCEEECCCCccCccC
Confidence            3444444444444444444444444444444444444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.41  E-value=0.00025  Score=58.86  Aligned_cols=43  Identities=16%  Similarity=0.175  Sum_probs=27.8

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      +.|+.|+|++|.+++..|..++.++.|+.|++++|.+++..|.
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  117 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH  117 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH
Confidence            4566666666666666666666666666666666666665553

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.39  E-value=0.00027  Score=56.55  Aligned_cols=40  Identities=28%  Similarity=0.232  Sum_probs=23.8

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGR   41 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~   41 (149)
                      +.|+.|+|++|++++..|..+..+++|++|++++|++++.
T Consensus        99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~  138 (452)
T 3zyi_A           99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI  138 (452)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC
T ss_pred             CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc
Confidence            4556666666666655555566666666666666666543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.37  E-value=0.00022  Score=55.64  Aligned_cols=44  Identities=30%  Similarity=0.166  Sum_probs=31.6

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      +++|+.|||++|+|++-.|..+..++.|+.|+|++|++++..|.
T Consensus        87 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~  130 (361)
T 2xot_A           87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN  130 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHH
Confidence            35677788888887766666677777777777777777765554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.36  E-value=0.00016  Score=55.95  Aligned_cols=39  Identities=28%  Similarity=0.391  Sum_probs=21.4

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      ++|+.|+|++|++++..|..+..++.|++|++++|++++
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  114 (353)
T 2z80_A           76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN  114 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS
T ss_pred             CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc
Confidence            345555555555555545555555555555555555553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.32  E-value=0.00019  Score=52.47  Aligned_cols=38  Identities=8%  Similarity=0.220  Sum_probs=17.0

Q ss_pred             CCccEEeCCCCc-CceeCCcchhcCCCCCEEEccC-CcCC
Q 041880            2 TALESLDLSFNR-LHGRIPEQLLGVTALASLNLSY-NRLR   39 (149)
Q Consensus         2 ~~L~~LdLs~N~-L~G~iP~~l~~l~~L~~l~ls~-N~l~   39 (149)
                      ++|+.||+++|. +++-.|..+..++.|++|++++ |+++
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~   94 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT   94 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC
T ss_pred             CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee
Confidence            344455555554 3322222444444455555544 4444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.31  E-value=0.0004  Score=55.67  Aligned_cols=39  Identities=31%  Similarity=0.351  Sum_probs=23.7

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      +.|+.|+|++|.+++..|..+.+++.|++|++++|++++
T Consensus        56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~   94 (477)
T 2id5_A           56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL   94 (477)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred             CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc
Confidence            455666666666666556666666666666666666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.30  E-value=0.00045  Score=51.47  Aligned_cols=43  Identities=30%  Similarity=0.319  Sum_probs=26.9

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      ++|+.|+|++|.+++..|..+..+++|++|++++|++++..|.
T Consensus        85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  127 (270)
T 2o6q_A           85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR  127 (270)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred             CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHH
Confidence            4566777777776654444556666666666666666655443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.30  E-value=0.00031  Score=56.01  Aligned_cols=43  Identities=26%  Similarity=0.274  Sum_probs=34.4

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      ++|+.|||++|.+++..|..+..++.|+.|++++|++++..|.
T Consensus       207 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  249 (440)
T 3zyj_A          207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN  249 (440)
T ss_dssp             SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh
Confidence            5677888888888887788888888888888888888776664

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.29  E-value=0.0003  Score=57.99  Aligned_cols=42  Identities=21%  Similarity=0.082  Sum_probs=23.9

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      ++|++|||++|++++..|..+..++.|++|++++|++.+..|
T Consensus        57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~   98 (606)
T 3t6q_A           57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE   98 (606)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT
T ss_pred             ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh
Confidence            445555555555555555555555555555555555555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.27  E-value=7.6e-05  Score=57.13  Aligned_cols=42  Identities=36%  Similarity=0.274  Sum_probs=32.7

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      ++|+.|||++|.+++..|..+..++.|+.|++++|++++..|
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~   75 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD   75 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh
Confidence            467888888888887767778888888888888888876554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.26  E-value=0.00042  Score=51.65  Aligned_cols=42  Identities=21%  Similarity=0.193  Sum_probs=23.5

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      ++|+.|||++|++++..|..+..+++|++|++++|++++..|
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   93 (276)
T 2z62_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL   93 (276)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred             cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh
Confidence            445556666665555444455555666666666665555443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.25  E-value=0.00046  Score=51.61  Aligned_cols=37  Identities=35%  Similarity=0.499  Sum_probs=25.3

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      ++|+.|+|++|++++. |. +..++.|+.|++++|++++
T Consensus        63 ~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~   99 (263)
T 1xeu_A           63 TNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN   99 (263)
T ss_dssp             TTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC
T ss_pred             CCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC
Confidence            5667777777777653 33 6777777777777777766

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.25  E-value=0.00023  Score=59.80  Aligned_cols=37  Identities=38%  Similarity=0.565  Sum_probs=21.0

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      ++|+.|+|++|.|++..|  +..++.|+.|+|++|++++
T Consensus       153 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          153 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             CCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence            455555555555555444  5555566666666665554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.24  E-value=0.00034  Score=58.46  Aligned_cols=15  Identities=27%  Similarity=0.259  Sum_probs=6.2

Q ss_pred             CCCCEEEccCCcCCC
Q 041880           26 TALASLNLSYNRLRG   40 (149)
Q Consensus        26 ~~L~~l~ls~N~l~G   40 (149)
                      ++|+.|++++|++++
T Consensus       140 ~~L~~L~Ls~N~l~~  154 (571)
T 3cvr_A          140 ALLEYINADNNQLTM  154 (571)
T ss_dssp             TTCCEEECCSSCCSC
T ss_pred             ccccEEeCCCCccCc
Confidence            334444444444443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.24  E-value=0.00025  Score=53.75  Aligned_cols=40  Identities=33%  Similarity=0.417  Sum_probs=22.0

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      ++|+.|+|++|.+++.  ..+..++.|+.|++++|++++..|
T Consensus       134 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~  173 (291)
T 1h6t_A          134 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  173 (291)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence            4555666666665542  345555556666666555555433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.24  E-value=0.00044  Score=51.67  Aligned_cols=38  Identities=29%  Similarity=0.314  Sum_probs=21.8

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGR   41 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~   41 (149)
                      ++|+.|||++|++++ +| .+..++.|+.|++++|++++.
T Consensus       128 ~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          128 KNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             TTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC
T ss_pred             ccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch
Confidence            455566666666654 23 455566666666666666554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.23  E-value=0.0006  Score=53.30  Aligned_cols=42  Identities=17%  Similarity=0.174  Sum_probs=23.4

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      +.|+.|+|++|.+++..|..+..++.|++|++++|.+.+..|
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  110 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP  110 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH
Confidence            455555666555555444455555555555555555555444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.18  E-value=0.00035  Score=56.93  Aligned_cols=64  Identities=22%  Similarity=0.231  Sum_probs=52.4

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCC-cccCCCccccccccCccC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN-QFNTFDNDSYIGNIHLCG   64 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg   64 (149)
                      +++|+.|||++|++++..|..+..+++|+.|++++|++++..|... .+..+....+.+|+..|.
T Consensus       469 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence            4689999999999999999999999999999999999999877542 344555566777766554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.13  E-value=0.00069  Score=56.59  Aligned_cols=41  Identities=24%  Similarity=0.230  Sum_probs=20.1

Q ss_pred             CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      +|++|||++|.+++..|..++.+++|++|++++|++++..|
T Consensus        98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  138 (680)
T 1ziw_A           98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL  138 (680)
T ss_dssp             TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC
T ss_pred             CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc
Confidence            44455555555544333445555555555555555554444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.11  E-value=0.0002  Score=60.36  Aligned_cols=40  Identities=35%  Similarity=0.464  Sum_probs=20.1

Q ss_pred             CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      +|+.|+|++|+|+ .||..+..+++|+.|++++|.++|.+|
T Consensus       262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~  301 (622)
T 3g06_A          262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  301 (622)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred             cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence            3444555555554 445555555555555555555554444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.04  E-value=0.00079  Score=50.97  Aligned_cols=37  Identities=32%  Similarity=0.471  Sum_probs=19.9

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      ++|+.|+|++|++++ + ..+..++.|+.|++++|++++
T Consensus       112 ~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~  148 (291)
T 1h6t_A          112 KKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD  148 (291)
T ss_dssp             TTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC
T ss_pred             CCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc
Confidence            445555555555554 2 345555555555555555554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.04  E-value=0.00015  Score=51.65  Aligned_cols=36  Identities=33%  Similarity=0.431  Sum_probs=19.7

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLR   39 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~   39 (149)
                      +.|+.|+|++|.+++ +| .+..++.|+.|++++|+++
T Consensus        48 ~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~   83 (198)
T 1ds9_A           48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK   83 (198)
T ss_dssp             TTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC
T ss_pred             CCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc
Confidence            345555555555554 45 5555555555555555554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.02  E-value=0.00072  Score=56.74  Aligned_cols=41  Identities=32%  Similarity=0.430  Sum_probs=29.7

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      |++|+.|+|++|.|++.  ..+..++.|+.|+|++|++++..|
T Consensus       130 l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A          130 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence            35677777777777653  467777888888888888877665

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.00  E-value=0.00093  Score=55.77  Aligned_cols=38  Identities=32%  Similarity=0.405  Sum_probs=21.2

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      ++|+.|+|++|.|++ ||.   .+++|+.|++++|++++ +|.
T Consensus       140 ~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~  177 (571)
T 3cvr_A          140 ALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE  177 (571)
T ss_dssp             TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC
T ss_pred             ccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch
Confidence            345556666666554 554   34556666666666555 444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=96.98  E-value=0.00099  Score=53.72  Aligned_cols=40  Identities=30%  Similarity=0.487  Sum_probs=32.1

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      ++|+.|++++|++++ +| +++.++.|++|++++|++++ +|.
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~  170 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPD  170 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCC
Confidence            467888888888886 88 58888888888888888886 554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=96.94  E-value=0.0011  Score=48.33  Aligned_cols=40  Identities=20%  Similarity=0.180  Sum_probs=31.0

Q ss_pred             CCCcc-EEeCCCCcCceeCCcchhcCCCCCEEEccCCc-CCCC
Q 041880            1 MTALE-SLDLSFNRLHGRIPEQLLGVTALASLNLSYNR-LRGR   41 (149)
Q Consensus         1 l~~L~-~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~-l~G~   41 (149)
                      +++|+ .|+|++|.++ .||......+.|+.|++++|. +++.
T Consensus       154 l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i  195 (239)
T 2xwt_C          154 LCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVI  195 (239)
T ss_dssp             TBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEE
T ss_pred             hhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccC
Confidence            35677 8999999888 788766666888889999884 7743

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=96.90  E-value=0.0014  Score=52.97  Aligned_cols=39  Identities=31%  Similarity=0.234  Sum_probs=29.2

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      ++|+.|||++|+|++ +|  ++.++.|+.|++++|+++|..+
T Consensus       212 ~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~  250 (457)
T 3bz5_A          212 IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV  250 (457)
T ss_dssp             TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred             CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH
Confidence            567778888888876 66  6777788888888888877543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.89  E-value=0.00012  Score=52.21  Aligned_cols=57  Identities=25%  Similarity=0.229  Sum_probs=43.9

Q ss_pred             CCccEEeCCCCcCceeCCc------chhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccc
Q 041880            2 TALESLDLSFNRLHGRIPE------QLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN   59 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~------~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn   59 (149)
                      ..++.++++.|.|+|.+|.      .+..++.|++|++++|++++ +|.-..+..+....+.+|
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n   80 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-ISSLSGMENLRILSLGRN   80 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEE
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-ccccccCCCCCEEECCCC
Confidence            4678899999999999998      89999999999999999998 773222233444444444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=96.88  E-value=0.00093  Score=50.94  Aligned_cols=37  Identities=19%  Similarity=0.349  Sum_probs=18.6

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      ++|+.|+|++|.+++ +|. +..++.|+.|++++|++++
T Consensus       151 ~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          151 TNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             TTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC
T ss_pred             CCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc
Confidence            345555555555553 222 4555555555555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.83  E-value=0.00085  Score=50.94  Aligned_cols=42  Identities=29%  Similarity=0.266  Sum_probs=35.2

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCC--CCCEEEccCCcCCCCCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVT--ALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~--~L~~l~ls~N~l~G~iP~   44 (149)
                      +++|+.|||++|+|++.  ..+..+.  .|++|+|++|.+.+.+|.
T Consensus       195 l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          195 APNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             STTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred             CCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence            47899999999999975  3455555  899999999999998884

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=96.82  E-value=0.0012  Score=53.02  Aligned_cols=37  Identities=27%  Similarity=0.366  Sum_probs=18.4

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      ++|+.|+|++|++++..|  +..++.|+.|++++|.+++
T Consensus       309 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~  345 (466)
T 1o6v_A          309 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD  345 (466)
T ss_dssp             TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             CCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence            445555555555555443  3444444444444444444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.79  E-value=0.00095  Score=51.69  Aligned_cols=43  Identities=19%  Similarity=0.255  Sum_probs=37.1

Q ss_pred             CCccEEeCCCCcCceeCCc-chhcCCCCCEEEccCCcCCCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPE-QLLGVTALASLNLSYNRLRGRIPRG   45 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~-~l~~l~~L~~l~ls~N~l~G~iP~~   45 (149)
                      ++++.|+|++|+|+ .||. .+..++.|++|+|++|++.+.||..
T Consensus        30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~   73 (350)
T 4ay9_X           30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEAD   73 (350)
T ss_dssp             TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTT
T ss_pred             CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChh
Confidence            46899999999998 5665 6899999999999999998888864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=96.78  E-value=0.0014  Score=52.56  Aligned_cols=40  Identities=33%  Similarity=0.483  Sum_probs=26.9

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      ++|+.|+|++|.+++..|  +..+++|+.|++++|++++..|
T Consensus       287 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~  326 (466)
T 1o6v_A          287 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP  326 (466)
T ss_dssp             TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred             CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence            456666777776665433  6677777777777777777655

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=96.73  E-value=0.0018  Score=49.25  Aligned_cols=37  Identities=24%  Similarity=0.504  Sum_probs=18.9

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      ++|+.|+|++|.+++ +|. +..++.|+.|++++|++++
T Consensus       107 ~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~  143 (308)
T 1h6u_A          107 QSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN  143 (308)
T ss_dssp             TTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC
T ss_pred             CCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc
Confidence            445555555555554 232 4555555555555555544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=96.71  E-value=0.0031  Score=50.88  Aligned_cols=37  Identities=27%  Similarity=0.248  Sum_probs=21.6

Q ss_pred             CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      .|+.|++++|++++.   .++.++.|+.|++++|++++ +|
T Consensus       192 ~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip  228 (457)
T 3bz5_A          192 LLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID  228 (457)
T ss_dssp             TCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC
T ss_pred             CCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC
Confidence            445555555555542   25566666677777777766 55

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=96.55  E-value=0.00084  Score=52.44  Aligned_cols=39  Identities=26%  Similarity=0.333  Sum_probs=25.9

Q ss_pred             CCccEEeCCCCcCcee----CCcchhc--CCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGR----IPEQLLG--VTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~----iP~~l~~--l~~L~~l~ls~N~l~G   40 (149)
                      ++|+.|+|++|.+++.    +|..+..  ++.|+.|++++|.+++
T Consensus       244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            5667777777777665    5555533  6777777777777766

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.43  E-value=0.0033  Score=42.32  Aligned_cols=56  Identities=20%  Similarity=0.277  Sum_probs=31.7

Q ss_pred             EEeCCCCcCc-eeCCcchhcCCCCCEEEccCCcCCCCCCCCC--cccCCCccccccccCccC
Q 041880            6 SLDLSFNRLH-GRIPEQLLGVTALASLNLSYNRLRGRIPRGN--QFNTFDNDSYIGNIHLCG   64 (149)
Q Consensus         6 ~LdLs~N~L~-G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~--~~~~~~~~~~~gn~~lcg   64 (149)
                      .+|.++++|+ .+||..+.  ++|+.|+|++|+|+. ||...  .+..+....+.+|+..|.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~NP~~Cd   70 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTA-LPPGLLDALPALRTAHLGANPWRCD   70 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSS-CCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCc-cChhhhhhccccCEEEecCCCeecc
Confidence            5677777775 45665432  357777777777764 44321  122334445666766663

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=96.42  E-value=0.0037  Score=52.63  Aligned_cols=37  Identities=38%  Similarity=0.487  Sum_probs=18.8

Q ss_pred             CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880            3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      +|+.|+|++|+|+ .||.   .+++|+.|++++|+++ .||.
T Consensus       242 ~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~  278 (622)
T 3g06_A          242 ELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPE  278 (622)
T ss_dssp             TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCG
T ss_pred             cCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCH
Confidence            3444455555444 3443   3445556666666655 4554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=96.38  E-value=0.0012  Score=51.57  Aligned_cols=38  Identities=26%  Similarity=0.246  Sum_probs=17.7

Q ss_pred             CccEEeCCCCcCc----eeCCcchhcCCCCCEEEccCCcCCC
Q 041880            3 ALESLDLSFNRLH----GRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         3 ~L~~LdLs~N~L~----G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      +|+.|+|++|.++    +.+|..+..++.|+.|++++|.+++
T Consensus       217 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~  258 (386)
T 2ca6_A          217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  258 (386)
T ss_dssp             TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence            4444444444443    3444444444444444444444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=96.20  E-value=0.0056  Score=46.74  Aligned_cols=37  Identities=30%  Similarity=0.433  Sum_probs=19.8

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      ++|++|++++|++++ +|. +..++.|++|++++|.+..
T Consensus        66 ~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~  102 (347)
T 4fmz_A           66 TNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD  102 (347)
T ss_dssp             TTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC
T ss_pred             CCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC
Confidence            445556666655553 333 5555555555555555544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.19  E-value=0.0016  Score=49.51  Aligned_cols=33  Identities=36%  Similarity=0.312  Sum_probs=12.3

Q ss_pred             ccEEeCCCCcCceeCCcchhcCCCCCEEEccCC
Q 041880            4 LESLDLSFNRLHGRIPEQLLGVTALASLNLSYN   36 (149)
Q Consensus         4 L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N   36 (149)
                      |++|+|++|.+++.+|..++.+++|++|++++|
T Consensus       120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~  152 (336)
T 2ast_B          120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  152 (336)
T ss_dssp             CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence            333333333333333333333333333333333

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.08  E-value=0.0064  Score=46.13  Aligned_cols=36  Identities=28%  Similarity=0.248  Sum_probs=19.0

Q ss_pred             CCccEEeCCCCc-CceeCCcchhcCCCCCEEEccCCc
Q 041880            2 TALESLDLSFNR-LHGRIPEQLLGVTALASLNLSYNR   37 (149)
Q Consensus         2 ~~L~~LdLs~N~-L~G~iP~~l~~l~~L~~l~ls~N~   37 (149)
                      ++|+.|+|++|. +++..|..+..++.|+.|++++|.
T Consensus       222 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          222 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            345555555555 444455555555555555555553

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=96.02  E-value=0.0018  Score=50.22  Aligned_cols=36  Identities=39%  Similarity=0.408  Sum_probs=14.5

Q ss_pred             ccEEeCCCCcCceeCCcchhcC-----CCCCEEEccCCcCC
Q 041880            4 LESLDLSFNRLHGRIPEQLLGV-----TALASLNLSYNRLR   39 (149)
Q Consensus         4 L~~LdLs~N~L~G~iP~~l~~l-----~~L~~l~ls~N~l~   39 (149)
                      |+.|||++|.+++..+..+..+     +.|++|++++|+++
T Consensus        53 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~   93 (362)
T 3goz_A           53 VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS   93 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             eeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence            4444444444443333333332     34444444444443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=95.90  E-value=0.0026  Score=50.39  Aligned_cols=39  Identities=26%  Similarity=0.159  Sum_probs=29.4

Q ss_pred             CCccEEeCCCCcCceeCCcchhc-----CCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLG-----VTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~-----l~~L~~l~ls~N~l~G   40 (149)
                      ++|+.|||++|.+++..+..+..     .+.|+.|++++|++++
T Consensus       341 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~  384 (461)
T 1z7x_W          341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  384 (461)
T ss_dssp             SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence            67888888888887765555553     6688888888888875

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=95.54  E-value=0.0037  Score=48.44  Aligned_cols=41  Identities=24%  Similarity=0.361  Sum_probs=27.1

Q ss_pred             CCccEEeCCCCcCceeCCcchhcC-----CCCCEEEccCCcCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGV-----TALASLNLSYNRLRGRI   42 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l-----~~L~~l~ls~N~l~G~i   42 (149)
                      ++|+.|||++|.+++..+..+...     +.|+.|++++|++++..
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  125 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS  125 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence            567777777777776666544443     67777777777775544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=95.49  E-value=0.015  Score=44.78  Aligned_cols=38  Identities=26%  Similarity=0.429  Sum_probs=22.1

Q ss_pred             CccEEeCCCCcCceeCCcc-hhcCCCCCEEEccCCcCCC
Q 041880            3 ALESLDLSFNRLHGRIPEQ-LLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP~~-l~~l~~L~~l~ls~N~l~G   40 (149)
                      +|+.|++++|+..+.||.. +..+++|+.||+++|+++.
T Consensus       178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~  216 (350)
T 4ay9_X          178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS  216 (350)
T ss_dssp             EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred             chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence            3455566554444456543 4566666777777776653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.84  E-value=0.052  Score=36.29  Aligned_cols=36  Identities=31%  Similarity=0.328  Sum_probs=30.8

Q ss_pred             CccEEeCCCCcCceeCCc-chhcCCCCCEEEccCCcCC
Q 041880            3 ALESLDLSFNRLHGRIPE-QLLGVTALASLNLSYNRLR   39 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP~-~l~~l~~L~~l~ls~N~l~   39 (149)
                      +|+.|||++|+|+. ||. .+..++.|+.|+|++|.+.
T Consensus        32 ~l~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTA-LPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSS-CCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCc-cChhhhhhccccCEEEecCCCee
Confidence            68999999999984 554 5678999999999999764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=94.74  E-value=0.0088  Score=47.06  Aligned_cols=40  Identities=18%  Similarity=0.204  Sum_probs=29.1

Q ss_pred             CCCccEEeCCCCcCceeCCcchh---cCCCCCEEEccCCcCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLL---GVTALASLNLSYNRLRG   40 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~---~l~~L~~l~ls~N~l~G   40 (149)
                      +++|+.|+|++|.+....+..+.   .++.|+.|+|+.|.+.+
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            36788888888888765554444   46778888888888766

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=94.70  E-value=0.012  Score=48.12  Aligned_cols=39  Identities=13%  Similarity=0.069  Sum_probs=25.6

Q ss_pred             CCccEEeCCCCcCce-eCCcchhcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHG-RIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G-~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      ++|+.|+|++|++++ .+|..+..+++|+.|++++|.+++
T Consensus       463 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~  502 (592)
T 3ogk_B          463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE  502 (592)
T ss_dssp             TTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred             ccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence            456777777777765 445555666777777777776654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=94.52  E-value=0.014  Score=46.03  Aligned_cols=38  Identities=21%  Similarity=0.189  Sum_probs=22.4

Q ss_pred             CCccEEeCCCCcCcee----CCcchhcCCCCCEEEccCCcCC
Q 041880            2 TALESLDLSFNRLHGR----IPEQLLGVTALASLNLSYNRLR   39 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~----iP~~l~~l~~L~~l~ls~N~l~   39 (149)
                      ++|+.|+|++|.++..    +|..+..+++|+.|++++|.++
T Consensus       256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  297 (461)
T 1z7x_W          256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG  297 (461)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred             CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence            3556666666666543    5555555666666666666554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=94.32  E-value=0.022  Score=44.78  Aligned_cols=38  Identities=32%  Similarity=0.339  Sum_probs=22.1

Q ss_pred             CCccEEeCCCCcCce----eCCcchhcCCCCCEEEccCCcCC
Q 041880            2 TALESLDLSFNRLHG----RIPEQLLGVTALASLNLSYNRLR   39 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G----~iP~~l~~l~~L~~l~ls~N~l~   39 (149)
                      +.|+.|||++|.|+.    .++..+...++|++|||++|+++
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~  196 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG  196 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence            346666666666643    23444455666666666666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=94.17  E-value=0.021  Score=44.86  Aligned_cols=39  Identities=28%  Similarity=0.338  Sum_probs=32.5

Q ss_pred             CCccEEeCCCCcCcee----CCcchhcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGR----IPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~----iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      ++|++|||++|.|+..    ++..+...++|+.|+|++|+++.
T Consensus       183 ~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          183 TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            5799999999999753    45667778899999999999865

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=93.76  E-value=0.019  Score=46.78  Aligned_cols=40  Identities=18%  Similarity=0.135  Sum_probs=27.4

Q ss_pred             CCccEEeCCCCcCcee-CCcchhcCCCCCEEEccCCcCCCC
Q 041880            2 TALESLDLSFNRLHGR-IPEQLLGVTALASLNLSYNRLRGR   41 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~-iP~~l~~l~~L~~l~ls~N~l~G~   41 (149)
                      ++|+.|||++|.+++. ++..+..+++|+.|++++|++++.
T Consensus       488 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          488 PNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             TTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             cccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            5677777777777654 444455677777777777776654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=93.35  E-value=0.051  Score=38.22  Aligned_cols=39  Identities=26%  Similarity=0.281  Sum_probs=30.5

Q ss_pred             CCccEEeCCCCcCcee----CCcchhcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGR----IPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~----iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      ++|+.|||++|.+...    +...+...++|++|+|++|++..
T Consensus        65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            5789999999998542    44456667889999999998865

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=93.34  E-value=0.038  Score=38.91  Aligned_cols=39  Identities=18%  Similarity=0.135  Sum_probs=31.3

Q ss_pred             CCccEEeCCCC-cCcee----CCcchhcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFN-RLHGR----IPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N-~L~G~----iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      +.|+.|+|++| .+...    +...+...++|++|+|++|++..
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~   79 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND   79 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCCh
Confidence            57899999999 88643    44556677899999999999864

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=92.18  E-value=0.04  Score=44.84  Aligned_cols=39  Identities=15%  Similarity=0.175  Sum_probs=27.7

Q ss_pred             CCccEEeCCCCcCceeCCcch-hcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQL-LGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l-~~l~~L~~l~ls~N~l~G   40 (149)
                      ++|+.|+|++|.+++..+..+ ..+++|+.|++++|.+++
T Consensus       456 ~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~  495 (594)
T 2p1m_B          456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD  495 (594)
T ss_dssp             TTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred             hhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence            567778888888766555444 567788888888887744

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=90.70  E-value=0.066  Score=42.02  Aligned_cols=40  Identities=15%  Similarity=0.057  Sum_probs=23.7

Q ss_pred             CCCccEEeCCC--CcCcee--C---Ccch--hcCCCCCEEEccCCcCCC
Q 041880            1 MTALESLDLSF--NRLHGR--I---PEQL--LGVTALASLNLSYNRLRG   40 (149)
Q Consensus         1 l~~L~~LdLs~--N~L~G~--i---P~~l--~~l~~L~~l~ls~N~l~G   40 (149)
                      +++|+.|+|+.  |+..|.  +   -..+  ..++.|+.|++.+|.+..
T Consensus       218 lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~  266 (362)
T 2ra8_A          218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN  266 (362)
T ss_dssp             CTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHH
T ss_pred             CCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCch
Confidence            46788888753  232222  1   1111  246788888888887764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=87.81  E-value=0.53  Score=38.11  Aligned_cols=36  Identities=31%  Similarity=0.252  Sum_probs=19.0

Q ss_pred             CCccEEeCCCCcCceeCCcchh----cCCCCCEEEccCCc
Q 041880            2 TALESLDLSFNRLHGRIPEQLL----GVTALASLNLSYNR   37 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~----~l~~L~~l~ls~N~   37 (149)
                      ++|++|+|++|.+++..+..+.    .+++|+.|++++|.
T Consensus       156 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             TTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred             CCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence            4556666666665554433333    33456666665554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=86.05  E-value=0.76  Score=34.70  Aligned_cols=40  Identities=30%  Similarity=0.360  Sum_probs=32.1

Q ss_pred             CCccEEeCCCCcCceeCCc-chhcCCCCCEEEccCCcCCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPE-QLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~-~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      ++|+.|+|++|+++ .||. .+..+++|+.+++++| + -.|+.
T Consensus       226 ~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i-~~I~~  266 (329)
T 3sb4_A          226 PNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-L-KTIGQ  266 (329)
T ss_dssp             TTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-C-CEECT
T ss_pred             CCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-c-ceehH
Confidence            57999999999998 5665 5888999999999987 3 33554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=83.94  E-value=0.54  Score=33.83  Aligned_cols=37  Identities=11%  Similarity=0.224  Sum_probs=18.4

Q ss_pred             CccEEeCCCC-cCcee----CCcchhcCCCCCEEEccCCcCC
Q 041880            3 ALESLDLSFN-RLHGR----IPEQLLGVTALASLNLSYNRLR   39 (149)
Q Consensus         3 ~L~~LdLs~N-~L~G~----iP~~l~~l~~L~~l~ls~N~l~   39 (149)
                      .|+.|+|++| ++...    |-..|..-+.|+.|+|++|++.
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig   83 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   83 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence            4566666654 44211    2223344455666666666553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=80.76  E-value=1  Score=31.75  Aligned_cols=35  Identities=9%  Similarity=0.138  Sum_probs=27.6

Q ss_pred             CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCc
Q 041880            3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNR   37 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~   37 (149)
                      .|+.|||+++.++..=-..+..++.|+.|+|++..
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence            47899999998865433557789999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	149
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 71.7 bits (174), Expect = 3e-16
 Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 8   DLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLCGEPL 67
           DL  NR++G +P+ L  +  L SLN+S+N L G IP+G     FD  +Y  N  LCG PL
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

Query: 68  TVTCS 72
              C+
Sbjct: 310 P-ACT 313

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 2e-06
 Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN 46
           +T L+ L  + N++       L  +T +  L+  +N++    P  N
Sbjct: 328 LTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLAN 371

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.3 bits (85), Expect = 3e-04
 Identities = 14/97 (14%), Positives = 26/97 (26%), Gaps = 5/97 (5%)

Query: 2   TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIH 61
                LDL  N++          +  L +L L  N++    P       F     +  ++
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-----GAFAPLVKLERLY 85

Query: 62  LCGEPLTVTCSNDGQPKAPPSASTDHEEDETPSWFDW 98
           L    L        +         +       S F+ 
Sbjct: 86  LSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNG 122

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 34.6 bits (78), Expect = 0.003
 Identities = 15/66 (22%), Positives = 24/66 (36%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI 60
             +L  L L  N++       L G+  LA L LS+N +               + ++ N 
Sbjct: 170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 229

Query: 61  HLCGEP 66
            L   P
Sbjct: 230 KLVKVP 235

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 34.5 bits (77), Expect = 0.003
 Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 5/43 (11%)

Query: 1   MTALESLDLSFNRLHGRIPEQLL-----GVTALASLNLSYNRL 38
              L++L L +N +       L       +  L  L L+ NR 
Sbjct: 272 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 34.8 bits (78), Expect = 0.003
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 1   MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG 40
              LE L  SFN L   +PE       L  L++ YN LR 
Sbjct: 303 PPRLERLIASFNHL-AEVPELP---QNLKQLHVEYNPLRE 338

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (76), Expect = 0.004
 Identities = 11/34 (32%), Positives = 13/34 (38%)

Query: 4  LESLDLSFNRLHGRIPEQLLGVTALASLNLSYNR 37
             L LS N L+      L+  T L  LNL    
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	149
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.38
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.19
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.19
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.14
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.13
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.08
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.71
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.63
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.61
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.53
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.49
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.39
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.33
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.29
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.13
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.03
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	96.87
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	96.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.82
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.69
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	96.67
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	96.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	96.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	96.51
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.48
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.28
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	96.25
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	95.72
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	94.98
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	94.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	93.97
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	92.81
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	92.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	92.31
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	91.72
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	91.17
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	87.14
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	86.31
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	80.84

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.38  E-value=1.6e-13  Score=103.85  Aligned_cols=70  Identities=43%  Similarity=0.783  Sum_probs=63.4

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccccCccCCCCCCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNIHLCGEPLTVTC   71 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~lcg~~~~~~c   71 (149)
                      ++.|+.|||++|+|+|.||.+++++++|++|||++|+|+|+||....+..+....+.||+.+||.|+. .|
T Consensus       243 ~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             ccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            36789999999999999999999999999999999999999998777788888889999999998763 44

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.19  E-value=1.9e-07  Score=69.67  Aligned_cols=41  Identities=37%  Similarity=0.421  Sum_probs=23.6

Q ss_pred             ccEEeCCCCcCce--eCCcchhcCCCCCEEEccC-CcCCCCCCC
Q 041880            4 LESLDLSFNRLHG--RIPEQLLGVTALASLNLSY-NRLRGRIPR   44 (149)
Q Consensus         4 L~~LdLs~N~L~G--~iP~~l~~l~~L~~l~ls~-N~l~G~iP~   44 (149)
                      ++.|||++|+++|  +||++++++++|++|++++ |+++|.||.
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~   95 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP   95 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccc
Confidence            4555666665555  4555666666666666653 555665554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=2e-06  Score=58.44  Aligned_cols=63  Identities=24%  Similarity=0.261  Sum_probs=46.7

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCC-CcccCCCccccccccCccC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRG-NQFNTFDNDSYIGNIHLCG   64 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn~~lcg   64 (149)
                      ++.|+.|+|++|+|+.--|..+..++.|++|+|++|+|+ .+|.. .....+....+.||+.-|.
T Consensus        55 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~C~  118 (156)
T d2ifga3          55 LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCS  118 (156)
T ss_dssp             CCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred             ccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhccccccccccCCCcccCC
Confidence            468899999999998766777889999999999999998 45543 2223444556677876553

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.14  E-value=1.5e-06  Score=56.91  Aligned_cols=57  Identities=26%  Similarity=0.342  Sum_probs=37.9

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccc
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN   59 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn   59 (149)
                      ++.|++||+++|.|+ .+|..++.++.|+.|++++|+++. +|.-..+..+....+.+|
T Consensus        19 l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3          19 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNN   75 (124)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSS
T ss_pred             CCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cCccccccccCeEECCCC
Confidence            356788888888887 678778888888888888888875 343223333333344444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2.2e-06  Score=62.54  Aligned_cols=63  Identities=32%  Similarity=0.347  Sum_probs=51.7

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCC-cccCCCccccccccCccC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGN-QFNTFDNDSYIGNIHLCG   64 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg   64 (149)
                      ++.|+.|++++|+|++..|..+..++.|++|+|++|+|+ .||... ....+....+.||+-.|.
T Consensus       147 l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             cccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCC
Confidence            357899999999999887788999999999999999999 888753 233455667789988775

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.08  E-value=2.7e-06  Score=59.27  Aligned_cols=39  Identities=28%  Similarity=0.470  Sum_probs=19.0

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      ++|+.|+|++|++.+..+..+..++.|++|++++|++..
T Consensus        54 ~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~   92 (192)
T d1w8aa_          54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE   92 (192)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE
T ss_pred             ceEeeeeccccccccccccccccccccceeeeccccccc
Confidence            344455555555554444444444455555555554443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.71  E-value=2.2e-05  Score=54.35  Aligned_cols=44  Identities=25%  Similarity=0.190  Sum_probs=36.3

Q ss_pred             CCccEEeCCCCcCceeCC-cchhcCCCCCEEEccCCcCCCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIP-EQLLGVTALASLNLSYNRLRGRIPRG   45 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP-~~l~~l~~L~~l~ls~N~l~G~iP~~   45 (149)
                      +.++.|+|++|+|++.++ ..+..++.|+.|++++|++.+..+..
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~   73 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA   73 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccc
Confidence            368899999999987664 56788999999999999998877754

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.63  E-value=4.3e-05  Score=56.09  Aligned_cols=41  Identities=32%  Similarity=0.458  Sum_probs=23.2

Q ss_pred             CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880            3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      .++.|++++|.+.+-.|..+..+++|++|++++|.++ .||.
T Consensus       196 ~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~  236 (305)
T d1xkua_         196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG  236 (305)
T ss_dssp             TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCT
T ss_pred             cccccccccccccccccccccccccceeeeccccccc-cccc
Confidence            4555666666665555555555666666666666554 3443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.8e-05  Score=57.87  Aligned_cols=41  Identities=29%  Similarity=0.289  Sum_probs=21.3

Q ss_pred             CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      .|+.|+|++|+|++-.|..+..+++|+.+++++|++++..|
T Consensus       154 ~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~  194 (284)
T d1ozna_         154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP  194 (284)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             chhhcccccCcccccchhhhccccccchhhhhhccccccCh
Confidence            44555555555554444445555555555555555554444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.53  E-value=5.9e-05  Score=48.96  Aligned_cols=58  Identities=24%  Similarity=0.193  Sum_probs=41.8

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC--CCCcccCCCcccccccc
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP--RGNQFNTFDNDSYIGNI   60 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP--~~~~~~~~~~~~~~gn~   60 (149)
                      +++|+.|++++|.++. +| .+..++.|+.+++++|+++..-.  .-..+..+....+.||+
T Consensus        42 l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          42 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             hhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCc
Confidence            4689999999999984 66 58999999999999999985322  11122344445566663

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=5e-05  Score=55.02  Aligned_cols=37  Identities=32%  Similarity=0.213  Sum_probs=26.1

Q ss_pred             CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCC
Q 041880            3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLR   39 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~   39 (149)
                      .|+.|||++|+|++--|..+..++.|++|+|++|+++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~   68 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT   68 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC
T ss_pred             CCCEEECcCCcCCCcCHHHhhcccccccccccccccc
Confidence            5677777777777544456777777777777777775

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.39  E-value=8.4e-05  Score=55.50  Aligned_cols=37  Identities=24%  Similarity=0.343  Sum_probs=24.6

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      +.++.|++++|++++- + .+..+++|+.|++++|++++
T Consensus       307 ~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~  343 (384)
T d2omza2         307 KNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD  343 (384)
T ss_dssp             TTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC
T ss_pred             cccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC
Confidence            4566777777777653 2 26667777777777777764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00016  Score=48.96  Aligned_cols=36  Identities=19%  Similarity=0.214  Sum_probs=25.2

Q ss_pred             CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCC
Q 041880            3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLR   39 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~   39 (149)
                      .++.|||++|.++ .||.....++.|+.||+++|+++
T Consensus        19 ~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~   54 (162)
T d1a9na_          19 RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR   54 (162)
T ss_dssp             SCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC
T ss_pred             cCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC
Confidence            4667777777776 45655566777777777777776

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00012  Score=49.60  Aligned_cols=40  Identities=18%  Similarity=0.267  Sum_probs=32.5

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRI   42 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~i   42 (149)
                      ++.|+.|||++|+++ +++ .+..++.|++|++++|+++..-
T Consensus        40 l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~   79 (162)
T d1a9na_          40 LDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIG   79 (162)
T ss_dssp             TTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEEC
T ss_pred             cccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCC
Confidence            467899999999998 564 4788899999999999987643

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.13  E-value=0.00019  Score=50.50  Aligned_cols=37  Identities=19%  Similarity=0.301  Sum_probs=26.0

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      ++|+.|++++|.+++..  .+..++.|+.|++++|++.+
T Consensus       151 ~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         151 TNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             TTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred             cccccccccccccccch--hhcccccceecccCCCccCC
Confidence            45777777777776432  36777777888887777765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=6.1e-05  Score=50.98  Aligned_cols=40  Identities=38%  Similarity=0.398  Sum_probs=34.1

Q ss_pred             CCCccEEeCCCCcCce--eCCcchhcCCCCCEEEccCCcCCC
Q 041880            1 MTALESLDLSFNRLHG--RIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G--~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      ++.|+.|||++|+++.  .++..+..+++|+.|++++|.++.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~  105 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS  105 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc
Confidence            4689999999999985  345667889999999999999875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.87  E-value=0.00054  Score=47.72  Aligned_cols=38  Identities=26%  Similarity=0.325  Sum_probs=24.2

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      +++|+.|+|++|.+++ +| .++.++.|+.|++++|++++
T Consensus        67 l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~  104 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD  104 (210)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCEEeCCCccccC-cc-ccccCccccccccccccccc
Confidence            3566677777777664 33 25666677777777776664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00085  Score=48.50  Aligned_cols=43  Identities=28%  Similarity=0.237  Sum_probs=34.3

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      +.|+.+++++|+|++..|..+..++.|+.|++++|++++..|.
T Consensus       129 ~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_         129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             cccchhhhccccccccChhHhccccchhhcccccCcccccchh
Confidence            4678899999999865566778888899999999988765554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.82  E-value=0.00093  Score=48.71  Aligned_cols=52  Identities=27%  Similarity=0.303  Sum_probs=39.2

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCcccccccc
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGNI   60 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~   60 (149)
                      ++|+.|+|++|+|+ .||..   +++|+.|++++|+++ .||..  ..++....+.+|+
T Consensus       284 ~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~--~~~L~~L~L~~N~  335 (353)
T d1jl5a_         284 PSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL--PQNLKQLHVEYNP  335 (353)
T ss_dssp             TTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC--CTTCCEEECCSSC
T ss_pred             CCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc--cCCCCEEECcCCc
Confidence            67999999999998 78865   567899999999997 67764  2344444555663

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.0011  Score=44.20  Aligned_cols=44  Identities=23%  Similarity=0.227  Sum_probs=34.6

Q ss_pred             CCCccEEeCCCCc-CceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880            1 MTALESLDLSFNR-LHGRIPEQLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         1 l~~L~~LdLs~N~-L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      +++|+.|++++|+ |+.--+..+..++.|+.|++++|+++..-|.
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~   74 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD   74 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccc
Confidence            3578999998765 7744445689999999999999999875554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.67  E-value=0.002  Score=46.76  Aligned_cols=39  Identities=31%  Similarity=0.419  Sum_probs=19.9

Q ss_pred             CccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCC
Q 041880            3 ALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGR   41 (149)
Q Consensus         3 ~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~   41 (149)
                      +|+.|++++|..++.+|..+..++.++.|++++|.+.+.
T Consensus       172 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~  210 (305)
T d1xkua_         172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV  210 (305)
T ss_dssp             TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred             ccCEEECCCCcCCCCChhHhhcccccccccccccccccc
Confidence            444555555555555555555555555555555555443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.66  E-value=0.00073  Score=50.14  Aligned_cols=41  Identities=24%  Similarity=0.418  Sum_probs=33.0

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIP   43 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP   43 (149)
                      |++|++|||++|+|++ +| .+.+++.|++|++++|++.+..|
T Consensus        65 L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~~i~~  105 (384)
T d2omza2          65 LNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIADITP  105 (384)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG
T ss_pred             CCCCCEEeCcCCcCCC-Cc-cccCCcccccccccccccccccc
Confidence            4678899999999985 44 38889999999999999887443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.63  E-value=0.00099  Score=46.32  Aligned_cols=37  Identities=32%  Similarity=0.374  Sum_probs=20.1

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      +.++.++++.|.+++  +..+..++.|+.+++++|++++
T Consensus       134 ~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~  170 (210)
T d1h6ta2         134 PQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD  170 (210)
T ss_dssp             TTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC
T ss_pred             ccccccccccccccc--cccccccccccccccccccccc
Confidence            345556666665553  2234555556666666665554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.51  E-value=0.0018  Score=44.43  Aligned_cols=36  Identities=25%  Similarity=0.413  Sum_probs=18.1

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLR   39 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~   39 (149)
                      ++|++|||++|++++-.|  +.+++.|++|++++|.+.
T Consensus        62 ~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~   97 (199)
T d2omxa2          62 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA   97 (199)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             CCcCcCccccccccCccc--ccCCcccccccccccccc
Confidence            445555555555553221  455555555555555443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.0011  Score=46.52  Aligned_cols=42  Identities=19%  Similarity=0.250  Sum_probs=35.9

Q ss_pred             CCccEEeCCCCcCceeCCc-chhcCCCCCEEEccCCcCCCCCCC
Q 041880            2 TALESLDLSFNRLHGRIPE-QLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~-~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      +.+++|||++|+++. ||. .+..+++|++|++++|.+...+|.
T Consensus        29 ~~l~~L~Ls~n~i~~-l~~~~f~~l~~L~~L~ls~n~~~~~i~~   71 (242)
T d1xwdc1          29 RNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEA   71 (242)
T ss_dssp             SCCSEEEEESCCCCE-ECTTTTTTCTTCCEEEEESCTTCCEECS
T ss_pred             CCCCEEECcCCcCCc-cChhHhhccchhhhhhhccccccceeec
Confidence            368999999999984 554 688999999999999999887765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.29  E-value=0.0022  Score=46.58  Aligned_cols=39  Identities=41%  Similarity=0.602  Sum_probs=32.6

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      +++|+.|+|++|+|+ +||..   +.+|+.|++++|+++ .+|.
T Consensus       303 ~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         303 PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred             cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCc
Confidence            368999999999998 78864   467999999999987 5664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.28  E-value=0.00045  Score=48.04  Aligned_cols=41  Identities=32%  Similarity=0.485  Sum_probs=33.7

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      |++|++|||++|+++ .|+ .+..+++|+.|++++|+++ .+|.
T Consensus        47 L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~   87 (198)
T d1m9la_          47 LKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIEN   87 (198)
T ss_dssp             TTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSS
T ss_pred             ccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccc
Confidence            467899999999998 675 5889999999999999886 4553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.25  E-value=0.0024  Score=44.48  Aligned_cols=38  Identities=21%  Similarity=0.386  Sum_probs=28.4

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      +++|+.|||++|.+++ +| .+..+++|++|++++|++++
T Consensus       172 l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         172 LSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISD  209 (227)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCB
T ss_pred             cccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCC
Confidence            4677888888888874 44 37778888888888888775

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.72  E-value=0.0052  Score=42.01  Aligned_cols=56  Identities=32%  Similarity=0.434  Sum_probs=39.4

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCCCCCCCCcccCCCccccccc
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRGRIPRGNQFNTFDNDSYIGN   59 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn   59 (149)
                      ++.|+.|++++|++.. +| .+..++.|+.|++++|++++.-| -..+..+....+.+|
T Consensus       127 l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         127 LTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSN  182 (199)
T ss_dssp             CTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred             hhhhHHhhhhhhhhcc-cc-cccccccccccccccccccCCcc-ccCCCCCCEEECCCC
Confidence            4678999999999873 44 58889999999999999887432 223334444445555

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=94.98  E-value=0.0014  Score=45.33  Aligned_cols=39  Identities=28%  Similarity=0.345  Sum_probs=30.5

Q ss_pred             CCCccEEeCCCCcCceeCCcchhcCCCCCEEEccCCcCCC
Q 041880            1 MTALESLDLSFNRLHGRIPEQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      +++|+.|||++|.++ .||.....++.|+.|++++|+++.
T Consensus        69 l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~  107 (198)
T d1m9la_          69 MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS  107 (198)
T ss_dssp             HTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC
T ss_pred             CccccChhhcccccc-cccccccccccccccccccccccc
Confidence            357888999999886 677666666778888888888875

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.0093  Score=44.50  Aligned_cols=39  Identities=26%  Similarity=0.169  Sum_probs=26.7

Q ss_pred             CCccEEeCCCCcCcee----CCcchh-cCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGR----IPEQLL-GVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~----iP~~l~-~l~~L~~l~ls~N~l~G   40 (149)
                      ++|+.|||++|+++.+    ++..+. ..+.|+.|++++|+++.
T Consensus       340 ~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~  383 (460)
T d1z7xw1         340 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  383 (460)
T ss_dssp             SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             cchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCCh
Confidence            4678888888888653    333443 35668888888888764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.97  E-value=0.0097  Score=39.53  Aligned_cols=43  Identities=28%  Similarity=0.208  Sum_probs=32.7

Q ss_pred             CCCccEEeCCCCcCceeCCc-chhcCCCCCEEEccCCcCCCCCCC
Q 041880            1 MTALESLDLSFNRLHGRIPE-QLLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         1 l~~L~~LdLs~N~L~G~iP~-~l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      +++|+.|||++|.++. ++. .......|+.+++++|.+......
T Consensus        90 l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~~~~~  133 (162)
T d1koha1          90 APNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSDTFRD  133 (162)
T ss_dssp             STTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSSSSSS
T ss_pred             CCcccccccccCcccc-chhhhhhhccccceeecCCCCcCcCccc
Confidence            4689999999999984 443 333445789999999999876554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.81  E-value=0.095  Score=35.96  Aligned_cols=36  Identities=22%  Similarity=0.392  Sum_probs=23.2

Q ss_pred             EeCCCCcCceeCCcc-hhcCCCCCEEEccCCcCCCCCCC
Q 041880            7 LDLSFNRLHGRIPEQ-LLGVTALASLNLSYNRLRGRIPR   44 (149)
Q Consensus         7 LdLs~N~L~G~iP~~-l~~l~~L~~l~ls~N~l~G~iP~   44 (149)
                      +++++|+|+ .||.. +..+++|+.|++++|+++ .+|.
T Consensus       182 ~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~  218 (242)
T d1xwdc1         182 NLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPS  218 (242)
T ss_dssp             ECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCC-CCCS
T ss_pred             ccccccccc-cccHHHhcCCCCCCEEECCCCcCC-ccCH
Confidence            345666665 56553 566777777777777776 4554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.62  E-value=0.054  Score=38.78  Aligned_cols=41  Identities=24%  Similarity=0.222  Sum_probs=33.4

Q ss_pred             CCCccEEeCCCC-cCceeCCcchhcCCCCCEEEccC-CcCCCC
Q 041880            1 MTALESLDLSFN-RLHGRIPEQLLGVTALASLNLSY-NRLRGR   41 (149)
Q Consensus         1 l~~L~~LdLs~N-~L~G~iP~~l~~l~~L~~l~ls~-N~l~G~   41 (149)
                      +++|+.||+++| .+++..+..+..++.|++|++++ ++++..
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~  216 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE  216 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred             cccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChH
Confidence            468999999985 57888888899999999999998 456543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.31  E-value=0.029  Score=40.28  Aligned_cols=34  Identities=35%  Similarity=0.331  Sum_probs=19.1

Q ss_pred             CCccEEeCCCCcCceeCCcchhcCCCCCEEEccC
Q 041880            2 TALESLDLSFNRLHGRIPEQLLGVTALASLNLSY   35 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP~~l~~l~~L~~l~ls~   35 (149)
                      ++|++|+|+++.+++..+..++.+++|+.|++++
T Consensus        71 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          71 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             CCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            3455555555555555555555555555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.72  E-value=0.045  Score=40.57  Aligned_cols=39  Identities=28%  Similarity=0.309  Sum_probs=20.1

Q ss_pred             CCccEEeCCCCcCcee----CCcchh-cCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGR----IPEQLL-GVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~----iP~~l~-~l~~L~~l~ls~N~l~G   40 (149)
                      ++|+.|||++|.++..    +...+. ..+.|+.|++++|+++.
T Consensus        55 ~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~   98 (460)
T d1z7xw1          55 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG   98 (460)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred             CCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccc
Confidence            4566777777766421    111111 12356666666666643

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=91.17  E-value=0.052  Score=39.63  Aligned_cols=38  Identities=21%  Similarity=0.252  Sum_probs=22.8

Q ss_pred             CCccEEeCCCCcCcee-----CCcchhcCCCCCEEEccCCcCC
Q 041880            2 TALESLDLSFNRLHGR-----IPEQLLGVTALASLNLSYNRLR   39 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~-----iP~~l~~l~~L~~l~ls~N~l~   39 (149)
                      +.|+.|+|++|++...     +...+..++.|+.|++++|.++
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~  228 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT  228 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhccccccccccc
Confidence            3566777777766432     2234556666777777776653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=87.14  E-value=0.14  Score=37.08  Aligned_cols=37  Identities=30%  Similarity=0.257  Sum_probs=22.7

Q ss_pred             CCccEEeCCCCcCcee----CCcchhcCCCCCEEEccCCcC
Q 041880            2 TALESLDLSFNRLHGR----IPEQLLGVTALASLNLSYNRL   38 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~----iP~~l~~l~~L~~l~ls~N~l   38 (149)
                      +.|+.|||++|.+...    +...+...++|+.|++++|.+
T Consensus        93 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1          93 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             CCcccccccccccccccccchhhhhcccccchheecccccc
Confidence            4566777777766543    333445566777777776665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=86.31  E-value=0.19  Score=33.02  Aligned_cols=38  Identities=13%  Similarity=0.240  Sum_probs=22.5

Q ss_pred             CCccEEeCCCC-cCcee----CCcchhcCCCCCEEEccCCcCC
Q 041880            2 TALESLDLSFN-RLHGR----IPEQLLGVTALASLNLSYNRLR   39 (149)
Q Consensus         2 ~~L~~LdLs~N-~L~G~----iP~~l~~l~~L~~l~ls~N~l~   39 (149)
                      ++|+.|+|+++ .++.+    +=..+...+.|+.|++++|.+.
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccc
Confidence            46777777763 34322    2223555667777777777664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=80.84  E-value=0.43  Score=31.16  Aligned_cols=39  Identities=21%  Similarity=0.211  Sum_probs=30.0

Q ss_pred             CCccEEeCCCCcCceeCC----cchhcCCCCCEEEccCCcCCC
Q 041880            2 TALESLDLSFNRLHGRIP----EQLLGVTALASLNLSYNRLRG   40 (149)
Q Consensus         2 ~~L~~LdLs~N~L~G~iP----~~l~~l~~L~~l~ls~N~l~G   40 (149)
                      +.|+.|+|++|.+...-.    ..+...+.|+.|++++|.++.
T Consensus        44 ~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~   86 (167)
T d1pgva_          44 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP   86 (167)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcch
Confidence            468999999999964322    345567899999999998865