Citrus Sinensis ID: 041882
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 491 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LQQ1 | 459 | Pentatricopeptide repeat- | yes | no | 0.910 | 0.973 | 0.605 | 1e-166 | |
| Q9FFE3 | 535 | Pentatricopeptide repeat- | no | no | 0.784 | 0.719 | 0.296 | 3e-53 | |
| O49436 | 660 | Pentatricopeptide repeat- | no | no | 0.745 | 0.554 | 0.326 | 1e-50 | |
| Q3E9F0 | 506 | Pentatricopeptide repeat- | no | no | 0.794 | 0.770 | 0.306 | 8e-48 | |
| Q9FNL2 | 472 | Pentatricopeptide repeat- | no | no | 0.725 | 0.754 | 0.288 | 1e-45 | |
| Q9LPX2 | 644 | Pentatricopeptide repeat- | no | no | 0.802 | 0.611 | 0.276 | 8e-45 | |
| Q9M302 | 659 | Pentatricopeptide repeat- | no | no | 0.743 | 0.553 | 0.270 | 9e-45 | |
| Q9FMF6 | 730 | Pentatricopeptide repeat- | no | no | 0.794 | 0.534 | 0.285 | 2e-43 | |
| Q9CAN6 | 590 | Pentatricopeptide repeat- | no | no | 0.773 | 0.644 | 0.280 | 5e-43 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.674 | 0.553 | 0.281 | 5e-43 |
| >sp|Q9LQQ1|PPR20_ARATH Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidopsis thaliana GN=At1g07740 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 584 bits (1506), Expect = e-166, Method: Compositional matrix adjust.
Identities = 279/461 (60%), Positives = 352/461 (76%), Gaps = 14/461 (3%)
Query: 5 HTLSTKTHFHSQKPKPKPSTKPRRKQNPQNHKTIRKTKEPIPFVNDLKEIRDPDEALSLF 64
++++ H+H+ +P+ KP TK P HK RK E +PF+ DLKEI DP+EALSLF
Sbjct: 13 QCIASQRHYHTSRPE-KP-TKKASSHEP-THKFTRKPWEEVPFLTDLKEIEDPEEALSLF 69
Query: 65 HRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA 124
H++ +MG +H YPSY+SLIYKLA++R+FDAV+ +L ++ N+RC+E+LF+ LIQHYGKA
Sbjct: 70 HQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESLFMGLIQHYGKA 129
Query: 125 HLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISF 184
VDKAI+VF+++TSFDCVRT+QS N+L+++LVDN ++ AK FD A M RPN +SF
Sbjct: 130 GSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAKDMRLRPNSVSF 189
Query: 185 NVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIK 244
N++IKG L K +WE A +VFDEMLE EV P+VVTYNSLIGFLCR +MGKAK L EDMIK
Sbjct: 190 NILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNDDMGKAKSLLEDMIK 249
Query: 245 KGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEE 304
K PNAVT+ LLM+GLC KGEYNEAKK+MFDM YRGCKP LVN+G+LMSDLGKRG+I+E
Sbjct: 250 KRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGILMSDLGKRGRIDE 309
Query: 305 AKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVD 364
AK LL EMKKR+ KPDVV YNIL+N+LC E R EAY+VLTEMQ+ GCKPNAATYRMM+D
Sbjct: 310 AKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQMKGCKPNAATYRMMID 369
Query: 365 GFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRF 424
GF R+EDF+ L VLNAML SRHCP TF C++ GL+KGG +D ACFVLE M K+ + F
Sbjct: 370 GFCRIEDFDSGLNVLNAMLASRHCPTPATFVCMVAGLIKGGNLDHACFVLEVMGKKNLSF 429
Query: 425 DLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNV 465
AW+ L++D CI DG Y A+S V+++
Sbjct: 430 GSGAWQNLLSDLCIKDGGV-----------YCEALSEVISI 459
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (533), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 137/462 (29%), Positives = 228/462 (49%), Gaps = 77/462 (16%)
Query: 44 PIPFVNDLKEIRDPDEALSLF---HRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLG 100
P V+ + + ++ D AL +F + H G H+Y +Y S+++KL+RAR FD VE+++
Sbjct: 49 PKRLVSMITQQQNIDLALQIFLYAGKSHP-GFTHNYDTYHSILFKLSRARAFDPVESLMA 107
Query: 101 YIQDF--NIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVD 158
+++ I+C E LFI L+++YG A + ++ +F R+ F R+++S N+LL++L+
Sbjct: 108 DLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQ 167
Query: 159 NDRVDDAKRMFDDA-DKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVV 217
N R D MF ++ + G PN+ + N+++K KK + E A +V DE+ + P +V
Sbjct: 168 NQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLV 227
Query: 218 TYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDM 277
TY +++G G+M AK + E+M+ +G YP+A TY +LM+G C G ++EA +M DM
Sbjct: 228 TYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDM 287
Query: 278 AYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDV---------------- 321
+P V +GV++ L K K EA+++ EM +R + PD
Sbjct: 288 EKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKV 347
Query: 322 -------------------VTYNILINYLCKEDRAAEAYKVLTEMQIGG----------- 351
+ LI++LCKE R EA K+ E + G
Sbjct: 348 DEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGSIPSLLTYNTLI 407
Query: 352 -----------------------CKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHC 388
CKPNA TY ++++G + + + ++VL ML
Sbjct: 408 AGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCF 467
Query: 389 PRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWE 430
P TF L GL K GK +DA ++ M + D ++WE
Sbjct: 468 PNKTTFLILFEGLQKLGKEEDAMKIV-SMAVMNGKVDKESWE 508
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 134/410 (32%), Positives = 207/410 (50%), Gaps = 44/410 (10%)
Query: 54 IRDPDEAL---SLFHRHHQMGS-KHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRC 109
+ +P EA +F +MGS K + +S+I A + DFD+VE +L I+ N
Sbjct: 51 VENPLEAPISEKMFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVI 110
Query: 110 KETLFISLIQHYGKAHLVDKAIEVFNRMT-SFDCVRTLQSFNSLLDILVDNDRVDDAKRM 168
E FI + + YGKAHL DKA+++F+RM F C R+++SFNS+L+++++
Sbjct: 111 IERSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEF 170
Query: 169 FD----DADKMGFRPNLISFNVMIK----------------------------------- 189
+D M PN +SFN++IK
Sbjct: 171 YDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMD 230
Query: 190 GRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYP 249
G K+ +EA + DEM P+ V YN LI LC+ G++ + L ++M KG P
Sbjct: 231 GLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVP 290
Query: 250 NAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLL 309
N VTY L+ GLC KG+ ++A ++ M C P V +G L++ L K+ + +A LL
Sbjct: 291 NEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLL 350
Query: 310 SEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRV 369
S M++R Y + Y++LI+ L KE +A EA + +M GCKPN Y ++VDG R
Sbjct: 351 SSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCRE 410
Query: 370 EDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEK 419
+ ++LN M+ S P T+S L+ G K G ++A V +EM+K
Sbjct: 411 GKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDK 460
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May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E9F0|PP392_ARATH Pentatricopeptide repeat-containing protein At5g18475 OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 191 bits (486), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 121/395 (30%), Positives = 209/395 (52%), Gaps = 5/395 (1%)
Query: 48 VNDLKEIRDPDEALSLFHR-HHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFN 106
V+ +K RDP L +F++ Q G H+ +Y+ L+ L R + F AV+ +L ++
Sbjct: 60 VSLMKRERDPQGVLDIFNKASQQKGFNHNNATYSVLLDNLVRHKKFLAVDAILHQMKYET 119
Query: 107 IRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVR-TLQSFNSLLDILVDNDRVDDA 165
R +E+LF++L++H+ ++ L DK +E+FN + V+ +L + ++ L++L+D+ V+ +
Sbjct: 120 CRFQESLFLNLMRHFSRSDLHDKVMEMFNLIQVIARVKPSLNAISTCLNLLIDSGEVNLS 179
Query: 166 KRMFDDA-DKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVP-PTVVTYNSLI 223
+++ A +G +PN FN+++K K G+ A V +EM + P +TY++L+
Sbjct: 180 RKLLLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTLM 239
Query: 224 GFLCRTGEMGKAKGLFEDMI-KKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGC 282
L +A LFEDMI K+G P+ VT+ +++ G C GE AKK++ M GC
Sbjct: 240 DCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNGC 299
Query: 283 KPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYK 342
P + N+ LM+ K GKI+EAK E+KK K D V Y L+N C+ EA K
Sbjct: 300 NPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMK 359
Query: 343 VLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLL 402
+L EM+ C+ + TY +++ G E +L++L+ + ++ +L L
Sbjct: 360 LLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRIILNALC 419
Query: 403 KGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDAC 437
G+++ A L M +R + W LV C
Sbjct: 420 CNGELEKAVKFLSVMSERGIWPHHATWNELVVRLC 454
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 184 bits (467), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 188/360 (52%), Gaps = 4/360 (1%)
Query: 40 KTKEPIPFVNDLKEIRDPDEALSLFHR---HHQMGSKHSYPSYASLIYKLARARDFDAVE 96
K P + ++ +D ++++++F + G H S+ ++ +L A F A E
Sbjct: 12 KNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFKAAE 71
Query: 97 TVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDIL 156
++ ++ N E + +S+ + YG+ H ++ VF++M FDC + +++ ++L IL
Sbjct: 72 DLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAIL 131
Query: 157 VDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKK-GEWEEASRVFDEMLEREVPPT 215
V+ ++++ A + + + ++G P + S NV+IK + G + ++F EM +R P
Sbjct: 132 VEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPD 191
Query: 216 VVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMF 275
TY +LI LCR G + +AK LF +M++K P VTY L+ GLC +EA + +
Sbjct: 192 SYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLE 251
Query: 276 DMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKED 335
+M +G +P + + LM L K G+ +A L M R +P++VTY LI LCKE
Sbjct: 252 EMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQ 311
Query: 336 RAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFS 395
+ EA ++L M + G KP+A Y ++ GF + F + L+ M+ P T++
Sbjct: 312 KIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWN 371
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 181 bits (460), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 111/401 (27%), Positives = 196/401 (48%), Gaps = 7/401 (1%)
Query: 44 PIPFVNDLKEI-------RDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVE 96
P+P V D + + + L+L + G HS + + +I R R
Sbjct: 84 PLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAF 143
Query: 97 TVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDIL 156
+ +G I +F +L+ V +A+E+ +RM TL + N+L++ L
Sbjct: 144 STMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGL 203
Query: 157 VDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTV 216
N +V DA + D + GF+PN +++ ++ K G+ A + +M ER +
Sbjct: 204 CLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDA 263
Query: 217 VTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFD 276
V Y+ +I LC+ G + A LF +M KG + +TY L+ G C G +++ K++ D
Sbjct: 264 VKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRD 323
Query: 277 MAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDR 336
M R P +V F VL+ K GK+ EA LL EM +R P+ +TYN LI+ CKE+R
Sbjct: 324 MIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENR 383
Query: 337 AAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSC 396
EA +++ M GC P+ T+ ++++G+ + + L++ M T++
Sbjct: 384 LEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNT 443
Query: 397 LLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDAC 437
L+ G + GK++ A + +EM R++R D+ +++ L+ C
Sbjct: 444 LVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLC 484
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 181 bits (460), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 107/396 (27%), Positives = 187/396 (47%), Gaps = 31/396 (7%)
Query: 73 KHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIE 132
KH+ ++ +I KLA D+V+ +L ++ C E LFIS+I Y + L ++A+E
Sbjct: 73 KHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVE 132
Query: 133 VFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRL 192
+F R+ F C +++ +N +LD L+ +R+ ++ D + GF PN+ ++NV++K
Sbjct: 133 MFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALC 192
Query: 193 KKGEWEEASRVFDEM------------------------------LEREVPPTVVTYNSL 222
K + + A ++ EM L P V YN+L
Sbjct: 193 KNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFEPVVSVYNAL 252
Query: 223 IGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGC 282
I LC+ + A L +M++KG PN ++Y+ L+ LC G+ A + M RGC
Sbjct: 253 INGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGC 312
Query: 283 KPQLVNFGVLMSDLGKRGKIEEAKSLLSEM-KKRQYKPDVVTYNILINYLCKEDRAAEAY 341
P + L+ RG +A L ++M + +P+VV YN L+ C +A
Sbjct: 313 HPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAV 372
Query: 342 KVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGL 401
V + M+ GC PN TY +++GF + +G++ + N MLTS CP + ++ ++ L
Sbjct: 373 SVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEAL 432
Query: 402 LKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDAC 437
+ K +A ++E M K + + + C
Sbjct: 433 CRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLC 468
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 123/431 (28%), Positives = 201/431 (46%), Gaps = 41/431 (9%)
Query: 69 QMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVD 128
Q G +HS+ Y LI KL +F ++ +L ++D I KE+LFIS+++ Y KA
Sbjct: 104 QNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPG 163
Query: 129 KAIEVFNRMTS-FDCVRTLQSFNSLLDILVDN---------------------------- 159
+ + M + + C T +S+N +L+ILV
Sbjct: 164 QTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVV 223
Query: 160 -------DRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREV 212
+ +D A + D K G PN + + +I K EA ++ +EM
Sbjct: 224 MKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGC 283
Query: 213 PPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKK 272
P T+N +I LC+ + +A + M+ +G P+ +TY LM GLC G + AK
Sbjct: 284 VPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAK- 342
Query: 273 MMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEM-KKRQYKPDVVTYNILINYL 331
D+ YR KP++V F L+ G++++AK++LS+M PDV TYN LI
Sbjct: 343 ---DLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGY 399
Query: 332 CKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRL 391
KE A +VL +M+ GCKPN +Y ++VDGF ++ + + VLN M P
Sbjct: 400 WKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNT 459
Query: 392 ETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRD 451
F+CL+ K ++ +A + EM ++ + D+ + L++ C D L +RD
Sbjct: 460 VGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRD 519
Query: 452 MRDYSMAISSV 462
M + ++V
Sbjct: 520 MISEGVVANTV 530
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070, mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (445), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 107/381 (28%), Positives = 182/381 (47%), Gaps = 1/381 (0%)
Query: 58 DEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISL 117
D +SL + +G H+ +Y+ I R +LG + SL
Sbjct: 92 DLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSL 151
Query: 118 IQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGF 177
+ + + + +A+ + ++M +F +L+ L +++ +A + + G
Sbjct: 152 LNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGC 211
Query: 178 RPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKG 237
+P+L+++ +I G K+GE + A + ++M + ++ VV YN++I LC+ M A
Sbjct: 212 QPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFD 271
Query: 238 LFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLG 297
LF M KG P+ TY L+ LC G +++A +++ DM + P LV F L+
Sbjct: 272 LFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFV 331
Query: 298 KRGKIEEAKSLLSEMKKRQYK-PDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA 356
K GK+ EA+ L EM K ++ PDVV YN LI CK R E +V EM G N
Sbjct: 332 KEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNT 391
Query: 357 ATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEE 416
TY ++ GF + D + + V M++ P + T++ LL GL G V+ A V E
Sbjct: 392 VTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEY 451
Query: 417 MEKRKMRFDLKAWEGLVTDAC 437
M+KR M+ D+ + ++ C
Sbjct: 452 MQKRDMKLDIVTYTTMIEALC 472
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (445), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 183/337 (54%), Gaps = 6/337 (1%)
Query: 116 SLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM 175
+LI+ + + KA ++ + V + ++N ++ +++A + D +M
Sbjct: 142 TLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLD---RM 198
Query: 176 GFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKA 235
P+++++N +++ G+ ++A V D ML+R+ P V+TY LI CR +G A
Sbjct: 199 SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHA 258
Query: 236 KGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSD 295
L ++M +G P+ VTY +L+ G+C +G +EA K + DM GC+P ++ +++
Sbjct: 259 MKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRS 318
Query: 296 LGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPN 355
+ G+ +A+ LL++M ++ + P VVT+NILIN+LC++ A +L +M GC+PN
Sbjct: 319 MCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPN 378
Query: 356 AATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHC-PRLETFSCLLVGLLKGGKVDDACFVL 414
+ +Y ++ GF + + + +++ L M+ SR C P + T++ +L L K GKV+DA +L
Sbjct: 379 SLSYNPLLHGFCKEKKMDRAIEYLERMV-SRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437
Query: 415 EEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRD 451
++ + L + V D G G +++ D
Sbjct: 438 NQLSSKGCSPVLITYN-TVIDGLAKAGKTGKAIKLLD 473
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 491 | ||||||
| 297746144 | 1093 | unnamed protein product [Vitis vinifera] | 0.900 | 0.404 | 0.647 | 1e-173 | |
| 225435096 | 501 | PREDICTED: pentatricopeptide repeat-cont | 0.879 | 0.862 | 0.660 | 1e-172 | |
| 147858028 | 1051 | hypothetical protein VITISV_003133 [Viti | 0.914 | 0.427 | 0.638 | 1e-171 | |
| 255580552 | 483 | pentatricopeptide repeat-containing prot | 0.930 | 0.946 | 0.628 | 1e-170 | |
| 224072823 | 427 | predicted protein [Populus trichocarpa] | 0.857 | 0.985 | 0.683 | 1e-168 | |
| 15222997 | 459 | pentatricopeptide repeat-containing prot | 0.910 | 0.973 | 0.605 | 1e-164 | |
| 356544600 | 449 | PREDICTED: pentatricopeptide repeat-cont | 0.869 | 0.951 | 0.602 | 1e-161 | |
| 297849070 | 459 | pentatricopeptide repeat-containing prot | 0.887 | 0.949 | 0.615 | 1e-161 | |
| 449485877 | 460 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.839 | 0.895 | 0.624 | 1e-153 | |
| 449436014 | 460 | PREDICTED: pentatricopeptide repeat-cont | 0.839 | 0.895 | 0.622 | 1e-153 |
| >gi|297746144|emb|CBI16200.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust.
Identities = 290/448 (64%), Positives = 372/448 (83%), Gaps = 6/448 (1%)
Query: 12 HFHSQKPKPKPSTKPRRKQNPQNHKTIRKTKEPIPFVNDLKEIRDPDEALSLFHRHHQMG 71
+H+ +P+ +P+T+ RR+ H++ + ++ IPF+ DLK ++DPD+ALSLF+++ QMG
Sbjct: 424 QYHTFRPR-RPTTESRREPP---HRSTSRLRKRIPFLADLKSVQDPDDALSLFNQYQQMG 479
Query: 72 SKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAI 131
KH YPSY++L+YKLAR+R+F+AVET+L Y+Q+ NIRC+ETLFI+LIQHYGK+ + +KA+
Sbjct: 480 FKHDYPSYSALVYKLARSRNFEAVETLLDYLQNINIRCRETLFIALIQHYGKSQMPEKAV 539
Query: 132 EVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGR 191
E+F RM SF+C RTL SFN+LL++LV+NDR DA +FD + KMGFR N ISFN++IKG
Sbjct: 540 ELFQRMPSFNCHRTLVSFNTLLNVLVENDRFLDAIGIFDRSTKMGFRRNSISFNIIIKGW 599
Query: 192 LKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNA 251
L KGEW++A +VF+EM+++EV PTVVT+NSLIGFLC G++ A GL EDMI+K PNA
Sbjct: 600 LGKGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGFLCGKGDLDGAMGLLEDMIQKRHRPNA 659
Query: 252 VTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSE 311
VTYALLMEGLC G+Y EAKKMMFDM Y+GCKP+L+NFGVLMSDLG+RG+I+++K+LL E
Sbjct: 660 VTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVLMSDLGRRGRIDDSKTLLLE 719
Query: 312 MKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVED 371
MK+R++KPDVVTYNILIN+LCKE RA EAYKVL EMQ+GGC+PNAATYRMMVDGF +VED
Sbjct: 720 MKRRRFKPDVVTYNILINHLCKEGRALEAYKVLVEMQVGGCEPNAATYRMMVDGFCQVED 779
Query: 372 FEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEG 431
FEG LKVL+AML HCPRLE+F L+VGLLK GK+D ACFVLEEMEKRKMRF L+AWE
Sbjct: 780 FEGGLKVLSAMLMCGHCPRLESFCDLVVGLLKNGKIDGACFVLEEMEKRKMRFHLEAWEA 839
Query: 432 LVTDACIGDGNAGGLVEIRDMRDYSMAI 459
LV DAC GD AGGLV R+++ + I
Sbjct: 840 LVKDACPGDRGAGGLV--RELKQNTTKI 865
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225435096|ref|XP_002281474.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust.
Identities = 288/436 (66%), Positives = 366/436 (83%), Gaps = 4/436 (0%)
Query: 12 HFHSQKPKPKPSTKPRRKQNPQNHKTIRKTKEPIPFVNDLKEIRDPDEALSLFHRHHQMG 71
+H+ +P+ +P+T+ RR+ H++ + ++ IPF+ DLK ++DPD+ALSLF+++ QMG
Sbjct: 62 QYHTFRPR-RPTTESRREPP---HRSTSRLRKRIPFLADLKSVQDPDDALSLFNQYQQMG 117
Query: 72 SKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAI 131
KH YPSY++L+YKLAR+R+F+AVET+L Y+Q+ NIRC+ETLFI+LIQHYGK+ + +KA+
Sbjct: 118 FKHDYPSYSALVYKLARSRNFEAVETLLDYLQNINIRCRETLFIALIQHYGKSQMPEKAV 177
Query: 132 EVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGR 191
E+F RM SF+C RTL SFN+LL++LV+NDR DA +FD + KMGFR N ISFN++IKG
Sbjct: 178 ELFQRMPSFNCHRTLVSFNTLLNVLVENDRFLDAIGIFDRSTKMGFRRNSISFNIIIKGW 237
Query: 192 LKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNA 251
L KGEW++A +VF+EM+++EV PTVVT+NSLIGFLC G++ A GL EDMI+K PNA
Sbjct: 238 LGKGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGFLCGKGDLDGAMGLLEDMIQKRHRPNA 297
Query: 252 VTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSE 311
VTYALLMEGLC G+Y EAKKMMFDM Y+GCKP+L+NFGVLMSDLG+RG+I+++K+LL E
Sbjct: 298 VTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVLMSDLGRRGRIDDSKTLLLE 357
Query: 312 MKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVED 371
MK+R++KPDVVTYNILIN+LCKE RA EAYKVL EMQ+GGC+PNAATYRMMVDGF +VED
Sbjct: 358 MKRRRFKPDVVTYNILINHLCKEGRALEAYKVLVEMQVGGCEPNAATYRMMVDGFCQVED 417
Query: 372 FEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEG 431
FEG LKVL+AML HCPRLE+F L+VGLLK GK+D ACFVLEEMEKRKMRF L+AWE
Sbjct: 418 FEGGLKVLSAMLMCGHCPRLESFCDLVVGLLKNGKIDGACFVLEEMEKRKMRFHLEAWEA 477
Query: 432 LVTDACIGDGNAGGLV 447
LV DAC GD AGGLV
Sbjct: 478 LVKDACPGDRGAGGLV 493
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147858028|emb|CAN80345.1| hypothetical protein VITISV_003133 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1569), Expect = e-171, Method: Compositional matrix adjust.
Identities = 290/454 (63%), Positives = 371/454 (81%), Gaps = 5/454 (1%)
Query: 12 HFHSQKPKPKPSTKPRRKQNPQNHKTIRKTKEPIPFVNDLKEIRDPDEALSLFHRHHQMG 71
+H+ +PK +P+T+ RR+ H++ + ++ IPF+ DLK ++DPD+ALSLF+++ QMG
Sbjct: 353 QYHTFRPK-RPTTESRREPP---HRSTSRLRKRIPFLADLKSVQDPDDALSLFNQYQQMG 408
Query: 72 SKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAI 131
KH YPSY++L+YKLAR+R+F+AVET+L Y+Q+ NIRC+ETLFI+LIQHYGK+ + +KAI
Sbjct: 409 FKHDYPSYSALVYKLARSRNFEAVETLLDYLQNINIRCRETLFIALIQHYGKSQMPEKAI 468
Query: 132 EVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGR 191
E+F RM SF+C RT+ SFN+LL++LV+ DR DA +FD + KMGFR N ISFN++IKG
Sbjct: 469 ELFQRMPSFNCHRTIVSFNTLLNVLVEIDRFLDAIGIFDRSTKMGFRRNSISFNIIIKGW 528
Query: 192 LKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNA 251
L KGEW++A +VF+EM+++EV PTVVT+NSLIGFLC G++ A GL ZDMI+K PNA
Sbjct: 529 LGKGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGFLCGKGDLDGAMGLLZDMIQKRHRPNA 588
Query: 252 VTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSE 311
VTYALLMEGLC G+Y EAKKMMFDM Y+GCKP+L+NFGVLMSDLG+RG+I++ K+LL E
Sbjct: 589 VTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVLMSDLGRRGRIDDXKTLLLE 648
Query: 312 MKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVED 371
MK+R++KPDVVTYNILIN LCKE RA EAYKVL EMQ+GGC+PNAATYRMMVDGF +VED
Sbjct: 649 MKRRRFKPDVVTYNILINXLCKEGRAXEAYKVLVEMQVGGCEPNAATYRMMVDGFCQVED 708
Query: 372 FEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEG 431
FEG LKVL+AML HCPRLE+F L+VGLLK GK+D ACFVLEEMEKRKMRF L+AWE
Sbjct: 709 FEGGLKVLSAMLMCGHCPRLESFCDLVVGLLKNGKIDGACFVLEEMEKRKMRFHLEAWEA 768
Query: 432 LVTDACIGDGNAGGL-VEIRDMRDYSMAISSVMN 464
LV DAC GD AGGL V+I ++ + V+N
Sbjct: 769 LVKDACPGDRGAGGLDVQISGKKNDGEXLMXVLN 802
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255580552|ref|XP_002531100.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223529296|gb|EEF31265.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 606 bits (1562), Expect = e-170, Method: Compositional matrix adjust.
Identities = 289/460 (62%), Positives = 361/460 (78%), Gaps = 3/460 (0%)
Query: 3 QLHTLSTKTHFHSQKPKPKPSTKPRRKQNPQNHKTIRKTKEPIPFVNDLKEIRDPDEALS 62
Q+H H+ Q+ K KPR+ H T R+ + IPFVN++KE+ DPD+ALS
Sbjct: 10 QIHRYINPAHY--QQYKTLGLAKPRKGNQKHQHFT-RRQRRDIPFVNNVKEVEDPDKALS 66
Query: 63 LFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYG 122
LFH + Q G +H YPSY++L+YKLAR+R F+AVETVLGY+QDFN+RC++TLFI+L +HYG
Sbjct: 67 LFHDYLQNGFRHDYPSYSALVYKLARSRRFEAVETVLGYLQDFNVRCRDTLFIALFEHYG 126
Query: 123 KAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLI 182
K LV KAI +FN MT F+C+RTLQSFN+LL++LVDNDR+ DAK++FD + +MGFR N +
Sbjct: 127 KVGLVAKAIRLFNEMTGFNCIRTLQSFNALLNVLVDNDRLFDAKQLFDRSSEMGFRLNSV 186
Query: 183 SFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDM 242
FN++IKG LKKGEW +A +VFDEMLER+V P+VVTYNSLIG+LCR GE+GKAKGLF+DM
Sbjct: 187 PFNILIKGWLKKGEWYQAGKVFDEMLERKVEPSVVTYNSLIGYLCRNGELGKAKGLFKDM 246
Query: 243 IKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKI 302
IKKG PNAVTYALLMEGLC GEY EAKKM+FDM YRGCKP+ +NFGVLM+DLGK+GKI
Sbjct: 247 IKKGKRPNAVTYALLMEGLCSMGEYKEAKKMLFDMEYRGCKPKNLNFGVLMNDLGKKGKI 306
Query: 303 EEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMM 362
EEAK LL EMKKR+++PDVV YNILIN+LCKE + AEAYK L EMQIGGC+ NAATYRM+
Sbjct: 307 EEAKLLLLEMKKRRFRPDVVIYNILINHLCKEGKVAEAYKTLFEMQIGGCEANAATYRML 366
Query: 363 VDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKM 422
DGF +V +FE LKVLNAML SRH PR+ETF+C +VGL+K G +D A FVLEEMEKRKM
Sbjct: 367 ADGFCQVGEFEEGLKVLNAMLVSRHAPRIETFNCFVVGLMKSGSIDGAFFVLEEMEKRKM 426
Query: 423 RFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSV 462
D WE LV C AG ++ + +++ ++S+
Sbjct: 427 ALDSDGWEALVRCCCSEHRGAGSVLLCESLIRHNLVVASL 466
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224072823|ref|XP_002303899.1| predicted protein [Populus trichocarpa] gi|222841331|gb|EEE78878.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 289/423 (68%), Positives = 341/423 (80%), Gaps = 2/423 (0%)
Query: 18 PKPKPSTKPRRKQNPQNHKTIRKTKEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYP 77
P KP KPR ++ + HKT + + PFVN +KE RDP EAL+LFH + Q G K YP
Sbjct: 7 PFNKPKAKPRHRR--KGHKTSSRNRNDAPFVNHVKEARDPVEALTLFHEYLQRGFKPDYP 64
Query: 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRM 137
SYA+L+YKLAR +DF AVE VL Y++D N+ C+ET+FI+L QHYGKA LV KA+E+FNRM
Sbjct: 65 SYAALLYKLARCQDFGAVEEVLRYVEDKNVHCQETIFIALFQHYGKAQLVHKAVELFNRM 124
Query: 138 TSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEW 197
T F+CVRT QS NSLL++LVDN +A +FD +MGFR N ++FNVMIKG L+KGEW
Sbjct: 125 TRFNCVRTSQSLNSLLNVLVDNGWFLEANELFDKGYEMGFRLNSVAFNVMIKGWLEKGEW 184
Query: 198 EEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALL 257
E+AS+VFDEMLER+V P+VVTYNSLIG+LCR GE+ KAKGL EDMIKKG PNA+T+ALL
Sbjct: 185 EQASKVFDEMLERKVEPSVVTYNSLIGYLCRNGELDKAKGLLEDMIKKGKRPNAITFALL 244
Query: 258 MEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQY 317
MEG C GE+NEAKKMMFDM YRGCKP +VNFGVLMSDLGKRGKI+EAKS+L EMKKR
Sbjct: 245 MEGSCLIGEHNEAKKMMFDMEYRGCKPTVVNFGVLMSDLGKRGKIDEAKSVLHEMKKRHM 304
Query: 318 KPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLK 377
KPDVVTYNILINYLCKE RAA+AY+VL EMQ+GGC+ NAATYRM+VDGF RV DFEG LK
Sbjct: 305 KPDVVTYNILINYLCKEGRAADAYEVLFEMQVGGCEANAATYRMLVDGFCRVGDFEGGLK 364
Query: 378 VLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDAC 437
VLNAMLTS H PR+ETF L+VGL+K G +D ACFVLEEMEKR+M F WE LV ++C
Sbjct: 365 VLNAMLTSGHFPRVETFRSLVVGLVKSGNLDGACFVLEEMEKRQMMFCADDWEALVMESC 424
Query: 438 IGD 440
GD
Sbjct: 425 RGD 427
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15222997|ref|NP_172253.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75180186|sp|Q9LQQ1.1|PPR20_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g07740, mitochondrial; Flags: Precursor gi|8439893|gb|AAF75079.1|AC007583_15 It contains PPR repeats PF|01535 [Arabidopsis thaliana] gi|14596021|gb|AAK68738.1| Unknown protein [Arabidopsis thaliana] gi|31376389|gb|AAP49521.1| At1g07730 [Arabidopsis thaliana] gi|51970836|dbj|BAD44110.1| hypothetical protein [Arabidopsis thaliana] gi|332190050|gb|AEE28171.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 279/461 (60%), Positives = 352/461 (76%), Gaps = 14/461 (3%)
Query: 5 HTLSTKTHFHSQKPKPKPSTKPRRKQNPQNHKTIRKTKEPIPFVNDLKEIRDPDEALSLF 64
++++ H+H+ +P+ KP TK P HK RK E +PF+ DLKEI DP+EALSLF
Sbjct: 13 QCIASQRHYHTSRPE-KP-TKKASSHEP-THKFTRKPWEEVPFLTDLKEIEDPEEALSLF 69
Query: 65 HRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA 124
H++ +MG +H YPSY+SLIYKLA++R+FDAV+ +L ++ N+RC+E+LF+ LIQHYGKA
Sbjct: 70 HQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESLFMGLIQHYGKA 129
Query: 125 HLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISF 184
VDKAI+VF+++TSFDCVRT+QS N+L+++LVDN ++ AK FD A M RPN +SF
Sbjct: 130 GSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAKDMRLRPNSVSF 189
Query: 185 NVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIK 244
N++IKG L K +WE A +VFDEMLE EV P+VVTYNSLIGFLCR +MGKAK L EDMIK
Sbjct: 190 NILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNDDMGKAKSLLEDMIK 249
Query: 245 KGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEE 304
K PNAVT+ LLM+GLC KGEYNEAKK+MFDM YRGCKP LVN+G+LMSDLGKRG+I+E
Sbjct: 250 KRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGILMSDLGKRGRIDE 309
Query: 305 AKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVD 364
AK LL EMKKR+ KPDVV YNIL+N+LC E R EAY+VLTEMQ+ GCKPNAATYRMM+D
Sbjct: 310 AKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQMKGCKPNAATYRMMID 369
Query: 365 GFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRF 424
GF R+EDF+ L VLNAML SRHCP TF C++ GL+KGG +D ACFVLE M K+ + F
Sbjct: 370 GFCRIEDFDSGLNVLNAMLASRHCPTPATFVCMVAGLIKGGNLDHACFVLEVMGKKNLSF 429
Query: 425 DLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNV 465
AW+ L++D CI DG Y A+S V+++
Sbjct: 430 GSGAWQNLLSDLCIKDGGV-----------YCEALSEVISI 459
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544600|ref|XP_003540737.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 270/448 (60%), Positives = 348/448 (77%), Gaps = 21/448 (4%)
Query: 4 LHTLSTKTHFHSQKPKP--KPSTKPRRKQNPQNHKTIRKTKEPIPFVNDLKEIRDPDEAL 61
+H + ++ H+ KP+P +P+ K R++ IPFV ++K + DP+EAL
Sbjct: 15 IHYANNRSIPHTHKPRPHERPTPKFRKR---------------IPFVTEVKTVEDPEEAL 59
Query: 62 SLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHY 121
SLFHR+ + G +H YPSYA+L+YKLAR+R FDAVET+L +++D ++C+E++FI+L QHY
Sbjct: 60 SLFHRYKEQGFRHYYPSYAALLYKLARSRMFDAVETILAHMKDTEMQCRESVFIALFQHY 119
Query: 122 GKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNL 181
G +KA+E+FNRM F+C RT+QSFN+LL++L+DNDR D+A +F + +MGFRPN
Sbjct: 120 GP----EKAVELFNRMPQFNCTRTIQSFNALLNVLIDNDRFDEANDIFGKSYEMGFRPNT 175
Query: 182 ISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFED 241
++FN+M+KGRL KGEW +A VFDEML++ V P+VVTYNSLIGFLCR G++ KA L ED
Sbjct: 176 VTFNIMVKGRLAKGEWGKACEVFDEMLQKRVQPSVVTYNSLIGFLCRKGDLDKAMALLED 235
Query: 242 MIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGK 301
M +KG + N VTYALLMEGLC + EAKK+MFDMAYRGCK Q VNFGVLM+DLGKRGK
Sbjct: 236 MGQKGKHANEVTYALLMEGLCSVEKTEEAKKLMFDMAYRGCKAQPVNFGVLMNDLGKRGK 295
Query: 302 IEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRM 361
+EEAKSLL EMKKR+ KPDVVTYNILINYLCKE +A EAYKVL EMQIGGC PNAATYRM
Sbjct: 296 VEEAKSLLHEMKKRRLKPDVVTYNILINYLCKEGKAMEAYKVLLEMQIGGCVPNAATYRM 355
Query: 362 MVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRK 421
+VDG ++ DFE +L VLNAMLTSRHCPR ETF+C++VGLLK G +D +CFVLEEMEKRK
Sbjct: 356 VVDGLCQIGDFEVALSVLNAMLTSRHCPRSETFNCMVVGLLKSGNIDGSCFVLEEMEKRK 415
Query: 422 MRFDLKAWEGLVTDACIGDGNAGGLVEI 449
+ FDL++WE ++ AC + A L+ +
Sbjct: 416 LEFDLESWETIIKSACSENKGASELMTV 443
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297849070|ref|XP_002892416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297338258|gb|EFH68675.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust.
Identities = 270/439 (61%), Positives = 340/439 (77%), Gaps = 3/439 (0%)
Query: 5 HTLSTKTHFHSQKPKPKPSTKPRRKQNPQNHKTIRKTKEPIPFVNDLKEIRDPDEALSLF 64
H ++++ H+H+ +P+ KP+ K + HK RK E +PF+ DLKEI DP+EALSLF
Sbjct: 13 HCIASQRHYHTSRPE-KPTKKATSHE--PTHKFTRKPWEEVPFLTDLKEIEDPEEALSLF 69
Query: 65 HRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA 124
H++ +MG +H YPSY+SLIYKLA++R+FDAV+ +L ++ N+RC+E+LF++LIQHYGKA
Sbjct: 70 HQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESLFMALIQHYGKA 129
Query: 125 HLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISF 184
VDKA++VF+++TSFDCVRT+QS N+L+++LVDN ++ AK FD A M RPN +SF
Sbjct: 130 GWVDKAVDVFHKLTSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAKDMRLRPNSVSF 189
Query: 185 NVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIK 244
N++IKG L K +WE A +VFDEMLE EV P+VVTYNSLIGFLCR +MGKA L EDMIK
Sbjct: 190 NILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNNDMGKATSLLEDMIK 249
Query: 245 KGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEE 304
K PNAVT+ LLM+GLC GEYNEAKK+MFDM YRGCKP LVN+GVLMSDLGKRGKI+E
Sbjct: 250 KRIRPNAVTFGLLMKGLCCNGEYNEAKKLMFDMEYRGCKPGLVNYGVLMSDLGKRGKIDE 309
Query: 305 AKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVD 364
AK LL EMKKR+ KPD V YNIL+N+LC E R EAY+ LTEMQ+ GCKPNAATYRM+VD
Sbjct: 310 AKILLGEMKKRRIKPDFVIYNILVNHLCTEGRVPEAYRTLTEMQMKGCKPNAATYRMIVD 369
Query: 365 GFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRF 424
GF R+ DF+ L VLNAML SRH P TF ++ GL+KGG +D ACFVLE M K+K+ F
Sbjct: 370 GFCRIGDFDSGLNVLNAMLASRHSPTPATFVRMVSGLIKGGNLDHACFVLEVMGKKKLSF 429
Query: 425 DLKAWEGLVTDACIGDGNA 443
AW+ L+ D CI DG A
Sbjct: 430 GYSAWQNLLCDLCIKDGGA 448
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449485877|ref|XP_004157297.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g07740, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 258/413 (62%), Positives = 326/413 (78%), Gaps = 1/413 (0%)
Query: 26 PRRKQNPQNHKTIRKTKEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYK 85
P + NHK RK +E IPFV D+KE++DP EAL+LF +H+ G KH YPSY+SLIYK
Sbjct: 31 PNKFDFENNHKQRRKIRERIPFVTDVKEVKDPCEALALFENYHEKGFKHHYPSYSSLIYK 90
Query: 86 LARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRT 145
LAR+R F+AVET+LG++++ NIRC ETLF++LIQHYGKAHLV+K IE+F++M SF+C RT
Sbjct: 91 LARSRRFEAVETILGHLRNRNIRCNETLFVALIQHYGKAHLVEKGIELFHQMPSFNCFRT 150
Query: 146 LQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFD 205
LQSFN LL+ LVD D+ A +F A +MGFRPN +S+N+MIKG +KKG WE+A +FD
Sbjct: 151 LQSFNVLLNTLVDCDQFSKASEIFQQAYEMGFRPNSVSYNIMIKGWIKKGGWEQACNLFD 210
Query: 206 EMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKG 265
EMLE+ V P+VVTYNS +G LCR GEM A LF++M +KG +PNAVTYALLMEG CF G
Sbjct: 211 EMLEKGVQPSVVTYNSXLGVLCRKGEMDTALCLFKNMTEKGHHPNAVTYALLMEGWCFIG 270
Query: 266 EYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYN 325
+Y EAKK+MFDM + GCK + VN+GVLM+ LGK G I+E +SLL+EMKKR+ KPDVVTYN
Sbjct: 271 KYKEAKKLMFDMEFHGCKLRPVNYGVLMTHLGKTGNIDEMESLLNEMKKRRLKPDVVTYN 330
Query: 326 ILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS 385
IL+NYLCKE + +AYKVL +MQ+GGC PNAATYRMM+DG+ DF+G++K+LNAML S
Sbjct: 331 ILVNYLCKEGKVGDAYKVLVKMQVGGCDPNAATYRMMIDGYCNAGDFDGAMKILNAMLMS 390
Query: 386 RHCPRLETFSCLLVGLLKGGKVDD-ACFVLEEMEKRKMRFDLKAWEGLVTDAC 437
H P L+TF+ L+VGLLKG DD CFVLEEMEKR++RFD + W L+ D C
Sbjct: 391 GHYPHLKTFASLVVGLLKGENNDDYVCFVLEEMEKRQLRFDAETWRILIMDVC 443
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436014|ref|XP_004135789.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 257/413 (62%), Positives = 325/413 (78%), Gaps = 1/413 (0%)
Query: 26 PRRKQNPQNHKTIRKTKEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYK 85
P + NHK RK +E IPFV D+KE++DP EAL+LF +H+ G KH YPSY+SLIYK
Sbjct: 31 PNKFDFENNHKQRRKIRERIPFVTDVKEVKDPCEALALFENYHEKGFKHHYPSYSSLIYK 90
Query: 86 LARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRT 145
LAR+R F+AVET+LG++++ NIRC ETLF++LIQHYGKAHLV+K IE+F++M SF+C RT
Sbjct: 91 LARSRRFEAVETILGHLRNRNIRCNETLFVALIQHYGKAHLVEKGIELFHQMPSFNCFRT 150
Query: 146 LQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFD 205
LQSFN LL+ LVD D+ A +F A +M FRPN +S+N+MIKG +KKG WE+A +FD
Sbjct: 151 LQSFNVLLNTLVDCDQFSKASEIFQQAYEMDFRPNSVSYNIMIKGWIKKGGWEQACNLFD 210
Query: 206 EMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKG 265
EMLE+ V P+VVTYNS +G LCR GEM A LF++M +KG +PNAVTYALLMEG CF G
Sbjct: 211 EMLEKGVQPSVVTYNSFLGVLCRKGEMDTALCLFKNMTEKGHHPNAVTYALLMEGWCFIG 270
Query: 266 EYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYN 325
+Y EAKK+MFDM + GCK + VN+GVLM+ LGK G I+E +SLL+EMKKR+ KPDVVTYN
Sbjct: 271 KYKEAKKLMFDMEFHGCKLRPVNYGVLMTHLGKTGNIDEMESLLNEMKKRRLKPDVVTYN 330
Query: 326 ILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS 385
IL+NYLCKE + +AYKVL +MQ+GGC PNAATYRMM+DG+ DF+G++K+LNAML S
Sbjct: 331 ILVNYLCKEGKVGDAYKVLVKMQVGGCDPNAATYRMMIDGYCNAGDFDGAMKILNAMLMS 390
Query: 386 RHCPRLETFSCLLVGLLKGGKVDD-ACFVLEEMEKRKMRFDLKAWEGLVTDAC 437
H P L+TF+ L+VGLLKG DD CFVLEEMEKR++RFD + W L+ D C
Sbjct: 391 GHYPHLKTFASLVVGLLKGENNDDYVCFVLEEMEKRQLRFDAETWRILIMDVC 443
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 491 | ||||||
| TAIR|locus:2026560 | 459 | AT1G07740 "AT1G07740" [Arabido | 0.828 | 0.886 | 0.643 | 7.5e-144 | |
| TAIR|locus:2171352 | 535 | AT5G16420 "AT5G16420" [Arabido | 0.649 | 0.596 | 0.328 | 2.6e-47 | |
| TAIR|locus:2009620 | 471 | AT1G53330 [Arabidopsis thalian | 0.782 | 0.815 | 0.307 | 4.4e-45 | |
| TAIR|locus:2161408 | 472 | AT5G46100 "AT5G46100" [Arabido | 0.725 | 0.754 | 0.288 | 3.9e-44 | |
| TAIR|locus:2119747 | 660 | EMB1025 "embryo defective 1025 | 0.786 | 0.584 | 0.307 | 1.4e-43 | |
| TAIR|locus:2168078 | 907 | AT5G59900 "AT5G59900" [Arabido | 0.731 | 0.395 | 0.279 | 5.9e-40 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.780 | 0.512 | 0.283 | 2.1e-39 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.790 | 0.602 | 0.272 | 2.3e-39 | |
| TAIR|locus:2015218 | 590 | AT1G63070 [Arabidopsis thalian | 0.843 | 0.701 | 0.264 | 9.9e-39 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.678 | 0.556 | 0.264 | 1.1e-38 |
| TAIR|locus:2026560 AT1G07740 "AT1G07740" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1406 (500.0 bits), Expect = 7.5e-144, P = 7.5e-144
Identities = 262/407 (64%), Positives = 319/407 (78%)
Query: 35 HKTIRKTKEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDA 94
HK RK E +PF+ DLKEI DP+EALSLFH++ +MG +H YPSY+SLIYKLA++R+FDA
Sbjct: 40 HKFTRKPWEEVPFLTDLKEIEDPEEALSLFHQYQEMGFRHDYPSYSSLIYKLAKSRNFDA 99
Query: 95 VETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLD 154
V+ +L ++ N+RC+E+LF+ LIQHYGKA VDKAI+VF+++TSFDCVRT+QS N+L++
Sbjct: 100 VDQILRLVRYRNVRCRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLIN 159
Query: 155 ILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPP 214
+LVDN ++ AK FD A M RPN +SFN++IKG L K +WE A +VFDEMLE EV P
Sbjct: 160 VLVDNGELEKAKSFFDGAKDMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQP 219
Query: 215 TVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMM 274
+VVTYNSLIGFLCR +MGKAK L EDMIKK PNAVT+ LLM+GLC KGEYNEAKK+M
Sbjct: 220 SVVTYNSLIGFLCRNDDMGKAKSLLEDMIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLM 279
Query: 275 FDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKE 334
FDM YRGCKP LVN+G+LMSDLGKRG+I+EAK LL EMKKR+ KPDVV YNIL+N+LC E
Sbjct: 280 FDMEYRGCKPGLVNYGILMSDLGKRGRIDEAKLLLGEMKKRRIKPDVVIYNILVNHLCTE 339
Query: 335 DRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETF 394
R EAY+VLTEMQ+ GCKPNAATYRMM+DGF R+EDF+ L VLNAML SRHCP TF
Sbjct: 340 CRVPEAYRVLTEMQMKGCKPNAATYRMMIDGFCRIEDFDSGLNVLNAMLASRHCPTPATF 399
Query: 395 SCXXXXXXXXXXXDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDG 441
C D ACFVLE M K+ + F AW+ L++D CI DG
Sbjct: 400 VCMVAGLIKGGNLDHACFVLEVMGKKNLSFGSGAWQNLLSDLCIKDG 446
|
|
| TAIR|locus:2171352 AT5G16420 "AT5G16420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 107/326 (32%), Positives = 188/326 (57%)
Query: 44 PIPFVNDLKEIRDPDEALSLF---HRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLG 100
P V+ + + ++ D AL +F + H G H+Y +Y S+++KL+RAR FD VE+++
Sbjct: 49 PKRLVSMITQQQNIDLALQIFLYAGKSHP-GFTHNYDTYHSILFKLSRARAFDPVESLMA 107
Query: 101 YIQDFN--IRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVD 158
+++ I+C E LFI L+++YG A + ++ +F R+ F R+++S N+LL++L+
Sbjct: 108 DLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQ 167
Query: 159 NDRVDDAKRMFDDA-DKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVV 217
N R D MF ++ + G PN+ + N+++K KK + E A +V DE+ + P +V
Sbjct: 168 NQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLV 227
Query: 218 TYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDM 277
TY +++G G+M AK + E+M+ +G YP+A TY +LM+G C G ++EA +M DM
Sbjct: 228 TYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDM 287
Query: 278 AYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRA 337
+P V +GV++ L K K EA+++ EM +R + PD +I+ LC++ +
Sbjct: 288 EKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKV 347
Query: 338 AEAYKVLTEMQIGGCKPNAATYRMMV 363
EA + +M C P+ A ++
Sbjct: 348 DEACGLWRKMLKNNCMPDNALLSTLI 373
|
|
| TAIR|locus:2009620 AT1G53330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 122/397 (30%), Positives = 204/397 (51%)
Query: 51 LKEIRDPDEALSLFHRHHQMGSKHSYP-SYASLIY-----KLARARDFDAVETVLGYIQ- 103
L+ DP A+ LF + P Y+ L Y KL ++ FD ++ VL +++
Sbjct: 16 LRRENDPSAAMKLFRNPDPESTNPKRPFRYSLLCYDIIITKLGGSKMFDELDQVLLHLKT 75
Query: 104 DFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVD 163
D I E +F ++I +G+ L +A+ +F+ M + C RT++S NSLL L+ ++
Sbjct: 76 DTRIVPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYRCQRTVKSLNSLLSALLKCGELE 135
Query: 164 DAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLI 223
K D+ G +P+ ++N++I G + G +++A ++FDEM++++V PT VT+ +LI
Sbjct: 136 KMKERLSSIDEFG-KPDACTYNILIHGCSQSGCFDDALKLFDEMVKKKVKPTGVTFGTLI 194
Query: 224 GFLCRTGEMGKAKGLFEDMIKK-GTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRG- 281
LC+ + +A + DM+K G P YA L++ LC GE + A K+ D AY G
Sbjct: 195 HGLCKDSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALCQIGELSFAFKLK-DEAYEGK 253
Query: 282 CKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAY 341
K + L+S L K G+ E +L EM ++ KPD VTYN+LIN C E+ + A
Sbjct: 254 IKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGFCVENDSESAN 313
Query: 342 KVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHC-PRLETFSCXXXX 400
+VL EM G KP+ +Y M++ F R++ +E + + M R C P ++
Sbjct: 314 RVLDEMVEKGLKPDVISYNMILGVFFRIKKWEEATYLFEDM-PRRGCSPDTLSYRIVFDG 372
Query: 401 XXXXXXXDDACFVLEEMEKRKMRFDLKAWEGLVTDAC 437
++A +L+EM + + EG + C
Sbjct: 373 LCEGLQFEEAAVILDEMLFKGYKPRRDRLEGFLQKLC 409
|
|
| TAIR|locus:2161408 AT5G46100 "AT5G46100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 104/360 (28%), Positives = 188/360 (52%)
Query: 40 KTKEPIPFVNDLKEIRDPDEALSLFHR---HHQMGSKHSYPSYASLIYKLARARDFDAVE 96
K P + ++ +D ++++++F + G H S+ ++ +L A F A E
Sbjct: 12 KNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFKAAE 71
Query: 97 TVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDIL 156
++ ++ N E + +S+ + YG+ H ++ VF++M FDC + +++ ++L IL
Sbjct: 72 DLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAIL 131
Query: 157 VDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKK-GEWEEASRVFDEMLEREVPPT 215
V+ ++++ A + + + ++G P + S NV+IK + G + ++F EM +R P
Sbjct: 132 VEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPD 191
Query: 216 VVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMF 275
TY +LI LCR G + +AK LF +M++K P VTY L+ GLC +EA + +
Sbjct: 192 SYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLE 251
Query: 276 DMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKED 335
+M +G +P + + LM L K G+ +A L M R +P++VTY LI LCKE
Sbjct: 252 EMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQ 311
Query: 336 RAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFS 395
+ EA ++L M + G KP+A Y ++ GF + F + L+ M+ P T++
Sbjct: 312 KIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWN 371
|
|
| TAIR|locus:2119747 EMB1025 "embryo defective 1025" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 460 (167.0 bits), Expect = 1.4e-43, P = 1.4e-43
Identities = 121/394 (30%), Positives = 195/394 (49%)
Query: 57 PDEALSLFHRH-HQMGSKHSYPSYASLIYKLARA----RDFDAVETVLGYIQDFNIRCKE 111
PD+A+ LFHR + K S S+ S++ + R + + V+ + NI
Sbjct: 128 PDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNG 187
Query: 112 TLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDD 171
F +I+ K VD+AIEVF M C+ ++ +L+D L +R+D+A + D+
Sbjct: 188 LSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDE 247
Query: 172 ADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGE 231
G P+ + +NV+I G KKG+ +++ D M + P VTYN+LI LC G+
Sbjct: 248 MQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGK 307
Query: 232 MGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGV 291
+ KA L E M+ PN VTY L+ GL + +A +++ M RG + V
Sbjct: 308 LDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSV 367
Query: 292 LMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGG 351
L+S L K GK EEA SL +M ++ KP++V Y++L++ LC+E + EA ++L M G
Sbjct: 368 LISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASG 427
Query: 352 CKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLE-TFSCXXXXXXXXXXXDDA 410
C PNA TY ++ GF + E +++V M C R + +S +A
Sbjct: 428 CLPNAYTYSSLMKGFFKTGLCEEAVQVWKEM-DKTGCSRNKFCYSVLIDGLCGVGRVKEA 486
Query: 411 CFVLEEMEKRKMRFDLKAWEGLVTDAC-IGDGNA 443
V +M ++ D A+ ++ C IG +A
Sbjct: 487 MMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDA 520
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| TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 417 (151.9 bits), Expect = 5.9e-40, Sum P(2) = 5.9e-40
Identities = 101/362 (27%), Positives = 183/362 (50%)
Query: 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRM 137
+Y +L+Y L + ++F+ ++ + E SL++ K +++A+ + R+
Sbjct: 299 TYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRV 358
Query: 138 TSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEW 197
F L +N+L+D L + +A+ +FD K+G RPN ++++++I ++G+
Sbjct: 359 VDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKL 418
Query: 198 EEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALL 257
+ A EM++ + +V YNSLI C+ G++ A+G +MI K P VTY L
Sbjct: 419 DTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSL 478
Query: 258 MEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQY 317
M G C KG+ N+A ++ +M +G P + F L+S L + G I +A L +EM +
Sbjct: 479 MGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNV 538
Query: 318 KPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLK 377
KP+ VTYN++I C+E ++A++ L EM G P+ +YR ++ G L + K
Sbjct: 539 KPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHG-LCLTGQASEAK 597
Query: 378 VLNAMLTSRHCPRLET-FSCXXXXXXXXXXXDDACFVLEEMEKRKMRFDLKAWEGLVTDA 436
V L +C E ++ ++A V +EM +R + DL + G++ D
Sbjct: 598 VFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCY-GVLIDG 656
Query: 437 CI 438
+
Sbjct: 657 SL 658
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| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 427 (155.4 bits), Expect = 2.1e-39, P = 2.1e-39
Identities = 109/385 (28%), Positives = 183/385 (47%)
Query: 58 DEALSLFHRHHQMGSKHSYPSYASLIYKLARA-RDFDAVETVLGYIQDFNIRCKETLFIS 116
D+ALS+ H G SY +++ R+ R+ E V + + + +
Sbjct: 151 DKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNI 210
Query: 117 LIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMG 176
LI+ + A +D A+ +F++M + C+ + ++N+L+D ++DD ++ G
Sbjct: 211 LIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKG 270
Query: 177 FRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAK 236
PNLIS+NV+I G ++G +E S V EM R VTYN+LI C+ G +A
Sbjct: 271 LEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQAL 330
Query: 237 GLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDL 296
+ +M++ G P+ +TY L+ +C G N A + + M RG P + L+
Sbjct: 331 VMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGF 390
Query: 297 GKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA 356
++G + EA +L EM + P VVTYN LIN C + +A VL +M+ G P+
Sbjct: 391 SQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDV 450
Query: 357 ATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCXXXXXXXXXXXDDACFVLEE 416
+Y ++ GF R D + +L+V M+ P T+S +AC + EE
Sbjct: 451 VSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEE 510
Query: 417 MEKRKMRFDLKAWEGLVTDACI-GD 440
M + + D + L+ C+ GD
Sbjct: 511 MLRVGLPPDEFTYTALINAYCMEGD 535
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| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 423 (154.0 bits), Expect = 2.3e-39, P = 2.3e-39
Identities = 106/389 (27%), Positives = 186/389 (47%)
Query: 61 LSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQH 120
L+L + G HS + + +I R R + +G I +F +L+
Sbjct: 108 LALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNG 167
Query: 121 YGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPN 180
V +A+E+ +RM TL + N+L++ L N +V DA + D + GF+PN
Sbjct: 168 LCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPN 227
Query: 181 LISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFE 240
+++ ++ K G+ A + +M ER + V Y+ +I LC+ G + A LF
Sbjct: 228 EVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFN 287
Query: 241 DMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRG 300
+M KG + +TY L+ G C G +++ K++ DM R P +V F VL+ K G
Sbjct: 288 EMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEG 347
Query: 301 KIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYR 360
K+ EA LL EM +R P+ +TYN LI+ CKE+R EA +++ M GC P+ T+
Sbjct: 348 KLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFN 407
Query: 361 MMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCXXXXXXXXXXXDDACFVLEEMEKR 420
++++G+ + + L++ M T++ + A + +EM R
Sbjct: 408 ILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSR 467
Query: 421 KMRFDLKAWEGLVTDACIGDGNAGGLVEI 449
++R D+ +++ L+ C +G +EI
Sbjct: 468 RVRPDIVSYKILLDGLC-DNGELEKALEI 495
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| TAIR|locus:2015218 AT1G63070 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 112/423 (26%), Positives = 195/423 (46%)
Query: 58 DEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISL 117
D +SL + +G H+ +Y+ I R +LG + SL
Sbjct: 92 DLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSL 151
Query: 118 IQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGF 177
+ + + + +A+ + ++M +F +L+ L +++ +A + + G
Sbjct: 152 LNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGC 211
Query: 178 RPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKG 237
+P+L+++ +I G K+GE + A + ++M + ++ VV YN++I LC+ M A
Sbjct: 212 QPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFD 271
Query: 238 LFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLG 297
LF M KG P+ TY L+ LC G +++A +++ DM + P LV F L+
Sbjct: 272 LFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFV 331
Query: 298 KRGKIEEAKSLLSEMKKRQYK-PDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA 356
K GK+ EA+ L EM K ++ PDVV YN LI CK R E +V EM G N
Sbjct: 332 KEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNT 391
Query: 357 ATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCXXXXXXXXXXXDDACFVLEE 416
TY ++ GF + D + + V M++ P + T++ + A V E
Sbjct: 392 VTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEY 451
Query: 417 MEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVM-NVVDLLWTYLGM 475
M+KR M+ D+ + ++ C AG + + D+ S+++ V NVV +T +
Sbjct: 452 MQKRDMKLDIVTYTTMIEALC----KAGKVEDGWDLF-CSLSLKGVKPNVVT--YTTMMS 504
Query: 476 GTC 478
G C
Sbjct: 505 GFC 507
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| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 90/340 (26%), Positives = 179/340 (52%)
Query: 116 SLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM 175
+LI+ + + KA ++ + V + ++N ++ +++A + D +M
Sbjct: 142 TLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLD---RM 198
Query: 176 GFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKA 235
P+++++N +++ G+ ++A V D ML+R+ P V+TY LI CR +G A
Sbjct: 199 SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHA 258
Query: 236 KGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSD 295
L ++M +G P+ VTY +L+ G+C +G +EA K + DM GC+P ++ +++
Sbjct: 259 MKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRS 318
Query: 296 LGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPN 355
+ G+ +A+ LL++M ++ + P VVT+NILIN+LC++ A +L +M GC+PN
Sbjct: 319 MCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPN 378
Query: 356 AATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHC-PRLETFSCXXXXXXXXXXXDDACFVL 414
+ +Y ++ GF + + + +++ L M+ SR C P + T++ +DA +L
Sbjct: 379 SLSYNPLLHGFCKEKKMDRAIEYLERMV-SRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437
Query: 415 EEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRD-MR 453
++ + L + ++ D G G +++ D MR
Sbjct: 438 NQLSSKGCSPVLITYNTVI-DGLAKAGKTGKAIKLLDEMR 476
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LQQ1 | PPR20_ARATH | No assigned EC number | 0.6052 | 0.9103 | 0.9738 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00024404001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (717 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 491 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-22 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-21 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-22
Identities = 80/330 (24%), Positives = 145/330 (43%), Gaps = 37/330 (11%)
Query: 87 ARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTL 146
A ++D D VL +Q+ ++ L+ +LI K+ VD EVF+ M + +
Sbjct: 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV 507
Query: 147 QSFNSLLD----------------IL----VDNDRV------------DDAKRMFDDADK 174
+F +L+D I+ V DRV R FD +
Sbjct: 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAE 567
Query: 175 MG-----FRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRT 229
M P+ I+ ++K G+ + A V+ + E + T Y + +
Sbjct: 568 MKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK 627
Query: 230 GEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNF 289
G+ A +++DM KKG P+ V ++ L++ G+ ++A +++ D +G K V++
Sbjct: 628 GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687
Query: 290 GVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQI 349
LM ++A L ++K + +P V T N LI LC+ ++ +A +VL+EM+
Sbjct: 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747
Query: 350 GGCKPNAATYRMMVDGFLRVEDFEGSLKVL 379
G PN TY +++ R +D + L +L
Sbjct: 748 LGLCPNTITYSILLVASERKDDADVGLDLL 777
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Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 6e-21
Identities = 72/315 (22%), Positives = 148/315 (46%), Gaps = 13/315 (4%)
Query: 63 LFHRHHQM---GSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQ 119
+F H+M G + + ++ +LI ARA G ++ N++ +F +LI
Sbjct: 491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550
Query: 120 HYGKAHLVDKAIEVFNRMTSF------DCVRTLQSFNSLLDILVDNDRVDDAKRMFDDAD 173
G++ VD+A +V M + D + + +L+ + +VD AK ++
Sbjct: 551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHI----TVGALMKACANAGQVDRAKEVYQMIH 606
Query: 174 KMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMG 233
+ + + + + +KG+W+ A ++D+M ++ V P V +++L+ G++
Sbjct: 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD 666
Query: 234 KAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLM 293
KA + +D K+G V+Y+ LM + +A ++ D+ +P + L+
Sbjct: 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALI 726
Query: 294 SDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCK 353
+ L + ++ +A +LSEMK+ P+ +TY+IL+ ++D A +L++ + G K
Sbjct: 727 TALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIK 786
Query: 354 PNAATYRMMVDGFLR 368
PN R + LR
Sbjct: 787 PNLVMCRCITGLCLR 801
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Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.9 bits (175), Expect = 8e-16
Identities = 24/48 (50%), Positives = 32/48 (66%)
Query: 319 PDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGF 366
PDVVTYN LI+ CK+ + EA K+ EM+ G KPN TY +++DG
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
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This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.5 bits (174), Expect = 1e-15
Identities = 24/49 (48%), Positives = 35/49 (71%)
Query: 214 PTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLC 262
P VVTYN+LI C+ G++ +A LF +M K+G PN TY++L++GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 3e-15
Identities = 67/284 (23%), Positives = 114/284 (40%), Gaps = 43/284 (15%)
Query: 145 TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVF 204
TL +FN L+ + + +D A R+ + G + + + +I K G+ + VF
Sbjct: 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495
Query: 205 DEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFK 264
EM+ V V T+ +LI R G++ KA G + M K
Sbjct: 496 HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV----------------- 538
Query: 265 GEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQY--KPDVV 322
KP V F L+S G+ G ++ A +L+EMK + PD +
Sbjct: 539 ------------------KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI 580
Query: 323 TYNILINYLCKE---DRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVL 379
T L+ DRA E Y+++ E I G Y + V+ + D++ +L +
Sbjct: 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKG---TPEVYTIAVNSCSQKGDWDFALSIY 637
Query: 380 NAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMR 423
+ M P FS L+ G +D A +L++ K+ ++
Sbjct: 638 DDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.0 bits (165), Expect = 2e-14
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 179 PNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCR 228
P+++++N +I G KKG+ EEA ++F+EM +R + P V TY+ LI LC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.7 bits (159), Expect = 1e-13
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 284 PQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCK 333
P +V + L+ K+GK+EEA L +EMKKR KP+V TY+ILI+ LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 1e-12
Identities = 75/375 (20%), Positives = 149/375 (39%), Gaps = 25/375 (6%)
Query: 56 DPDEALSLFHRHHQMGSKHSYPSYASLIYK-----LARA-RDFDAVETVLGYIQDFNIRC 109
+ EA +LF + GS ++ ++ ARA + G + D + C
Sbjct: 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC 263
Query: 110 KETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMF 169
+LI Y K ++ A VF+ M +T ++NS+L + ++A ++
Sbjct: 264 ------ALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLY 313
Query: 170 DDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRT 229
+ G + +F++MI+ + E A + ++ P +V +L+ +
Sbjct: 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373
Query: 230 GEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNF 289
G M A+ +F+ M +K N +++ L+ G G +A +M M G P V F
Sbjct: 374 GRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429
Query: 290 GVLMSDLGKRGKIEEAKSLLSEMKKRQ-YKPDVVTYNILINYLCKEDRAAEAYKVLTEMQ 348
++S G E+ + M + KP + Y +I L +E EAY ++
Sbjct: 430 LAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP 489
Query: 349 IGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVD 408
KP + ++ ++ E ++ L +L + LL G+
Sbjct: 490 F---KPTVNMWAALLTACRIHKNLELG-RLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQA 545
Query: 409 DACFVLEEMEKRKMR 423
+A V+E ++++ +
Sbjct: 546 EAAKVVETLKRKGLS 560
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 2e-12
Identities = 73/314 (23%), Positives = 131/314 (41%), Gaps = 34/314 (10%)
Query: 165 AKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIG 224
K ++ + GF P+ N ++ +K G +A R+FDEM ER + ++ ++IG
Sbjct: 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIG 197
Query: 225 FLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLME-----GLCFKGEYNE---AKKMMFD 276
L G +A LF +M + G+ T+ +++ G G+ K +
Sbjct: 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257
Query: 277 MAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDR 336
+ C L+ K G IE+A+ + M ++ V +N ++
Sbjct: 258 DTFVSC--------ALIDMYSKCGDIEDARCVFDGMPEKT----TVAWNSMLAGYALHGY 305
Query: 337 AAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSC 396
+ EA + EM+ G + T+ +M+ F R+ E + K +A L P +
Sbjct: 306 SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA-KQAHAGLIRTGFPLDIVANT 364
Query: 397 LLVGLL-KGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDY 455
LV L K G+++DA V + M ++ +L +W L+ G GN G + +M +
Sbjct: 365 ALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIA----GYGNHGRGTKAVEMFER 416
Query: 456 SMAISSVMNVVDLL 469
+A N V L
Sbjct: 417 MIAEGVAPNHVTFL 430
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 103/527 (19%), Positives = 202/527 (38%), Gaps = 81/527 (15%)
Query: 17 KPKPKPSTKPRRKQNPQNHKTI-RKTKEPIPFVNDLKEIRDPDEALSLFHRHHQ------ 69
KP+P+ +P R + ++ T+ V+ +I E L RH +
Sbjct: 56 KPRPRLKPEPIRIEVSESKDARLDDTQIRKSGVSLCSQI----EKLVACGRHREALELFE 111
Query: 70 ---MGSKHSYPS--YASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA 124
G + P+ Y +L+ + V+ V +++ + + ++ + K
Sbjct: 112 ILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC 171
Query: 125 HLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISF 184
++ A +F+ M R L S+ +++ LVD +A +F + + G +F
Sbjct: 172 GMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTF 227
Query: 185 NVMIK----------GRL-------------------------KKGEWEEASRVFDEMLE 209
VM++ G+ K G+ E+A VFD M E
Sbjct: 228 VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE 287
Query: 210 REVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFK-GEYN 268
+ T V +NS++ G +A L+ +M G + T++ +M + +
Sbjct: 288 K----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFS-IMIRIFSRLALLE 342
Query: 269 EAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILI 328
AK+ + G +V L+ K G++E+A+++ M ++ +++++N LI
Sbjct: 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALI 398
Query: 329 NYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHC 388
R +A ++ M G PN T+ + V R + ++ H
Sbjct: 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTF-LAVLSACRYSGLSEQGWEIFQSMSENHR 457
Query: 389 --PRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKA--WEGLVTDACIGDGNAG 444
PR ++C++ L + G +D+A ++ R+ F W L+T AC N
Sbjct: 458 IKPRAMHYACMIELLGREGLLDEAYAMI-----RRAPFKPTVNMWAALLT-ACRIHKNL- 510
Query: 445 GLVEIRDMRDYSMAISSVMNVVDLLWTYLGMG----TCVVIDLFQKR 487
L + + Y M + N V LL Y G V++ +++
Sbjct: 511 ELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 7e-10
Identities = 65/321 (20%), Positives = 109/321 (33%), Gaps = 34/321 (10%)
Query: 102 IQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDR 161
I E+ L Y + K+ +R+ + +R S + L
Sbjct: 277 ISSGKGIFAESKREELYTFYEEKQSRAKS----SRLPNVKGLRKGVSSATNSLSLD---- 328
Query: 162 VDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNS 221
K+ D + ++ + +R+ P + YN
Sbjct: 329 ----KKNNGVKDAELPGQSSGQAASDVEEENSLAAYNGGVS-----GKRKSPEYIDAYNR 379
Query: 222 LIGFLCRTGEMGKAKGLFEDMIKKGTYP-NAVTYALLMEGLCFKGEYNEAKKMMFDMAYR 280
L+ R G + L EDM K+G + + +A + + EA +R
Sbjct: 380 LL----RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEA--------FR 427
Query: 281 GCK----PQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDR 336
K P L F +LMS I+ A +L +++ K D Y LI+ K +
Sbjct: 428 FAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK 487
Query: 337 AAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSC 396
++V EM G + N T+ ++DG R + M + P F+
Sbjct: 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNA 547
Query: 397 LLVGLLKGGKVDDACFVLEEM 417
L+ + G VD A VL EM
Sbjct: 548 LISACGQSGAVDRAFDVLAEM 568
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 7e-10
Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 16/214 (7%)
Query: 151 SLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLER 210
+L+D+ R++DA+ +FD +M R NLIS+N +I G G +A +F+ M+
Sbjct: 365 ALVDLYSKWGRMEDARNVFD---RMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420
Query: 211 EVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIK-KGTYPNAVTYALLMEGLCFKGEYNE 269
V P VT+ +++ +G + +F+ M + P A+ YA ++E L +G +E
Sbjct: 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480
Query: 270 AKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAK---SLLSEMKKRQYKPDVVTYNI 326
A M+ + KP + + L++ +E + L M + VV N+
Sbjct: 481 AYAMIRRAPF---KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNL 537
Query: 327 LINYLCKEDRAAEAYKVLTEMQIGG-CKPNAATY 359
+ R AEA KV+ ++ G A T+
Sbjct: 538 YNS----SGRQAEAAKVVETLKRKGLSMHPACTW 567
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 1e-08
Identities = 60/247 (24%), Positives = 106/247 (42%), Gaps = 30/247 (12%)
Query: 150 NSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLE 209
N+LLD+ V R++ A F+ +K +++S+N+++ G + G+ A +F+ M+E
Sbjct: 528 NALLDLYVRCGRMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGSMAVELFNRMVE 582
Query: 210 REVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK-GTYPNAVTYALLMEGLCFKGEYN 268
V P VT+ SL+ R+G + + F M +K PN YA +++ L G+
Sbjct: 583 SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT 642
Query: 269 EAKKMMFDMAYRGCKPQLVNFGVLMS--------DLGKRGKIEEAKSLLSEMKKRQYKPD 320
EA + M P +G L++ +LG E A + E+
Sbjct: 643 EAYNFINKMP---ITPDPAVWGALLNACRIHRHVELG-----ELAAQHIFELDPN----S 690
Query: 321 VVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDG----FLRVEDFEGSL 376
V Y +L N + E +V M+ G + + V G FL ++ +
Sbjct: 691 VGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQI 750
Query: 377 KVLNAML 383
K +N +L
Sbjct: 751 KEINTVL 757
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 1e-08
Identities = 57/242 (23%), Positives = 100/242 (41%), Gaps = 43/242 (17%)
Query: 117 LIQHYGKAHLVDKAIEVFNRMT---------SFDCV-RT--------------------- 145
L+ Y KA D+A+ +++RM +F CV RT
Sbjct: 158 LVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG 217
Query: 146 ----LQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEAS 201
+ N+L+ + V V A+ +FD +M R + IS+N MI G + GE E
Sbjct: 218 FELDVDVVNALITMYVKCGDVVSARLVFD---RMPRR-DCISWNAMISGYFENGECLEGL 273
Query: 202 RVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGL 261
+F M E V P ++T S+I G+ + + ++K G + L++
Sbjct: 274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY 333
Query: 262 CFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDV 321
G + EA+K+ M + V++ ++S K G ++A + M++ PD
Sbjct: 334 LSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389
Query: 322 VT 323
+T
Sbjct: 390 IT 391
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 5e-08
Identities = 12/43 (27%), Positives = 30/43 (69%)
Query: 148 SFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKG 190
++N+L+D +V++A ++F++ K G +PN+ +++++I G
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 5e-08
Identities = 65/315 (20%), Positives = 119/315 (37%), Gaps = 59/315 (18%)
Query: 99 LGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVD 158
L +Q+ + E +++L + V++ V +R S ++ N++L + V
Sbjct: 74 LESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVR 133
Query: 159 NDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVT 218
+ A +F KM R +L S+NV++ G K G ++EA ++ ML V P V T
Sbjct: 134 FGELVHAWYVFG---KMPER-DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYT 189
Query: 219 Y-----------------------------------NSLIGFLCRTGEMGKAKGLFEDMI 243
+ N+LI + G++ A+ +F+ M
Sbjct: 190 FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP 249
Query: 244 KKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIE 303
++ + +++ ++ G GE E ++ F M P L+ ++S G
Sbjct: 250 RR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305
Query: 304 EAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQ----------IGGCK 353
+ + + K + DV N LI EA KV + M+ I G +
Sbjct: 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365
Query: 354 PNA------ATYRMM 362
N TY +M
Sbjct: 366 KNGLPDKALETYALM 380
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (116), Expect = 6e-08
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 315 RQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQ 348
+ KPDVVTYN LI+ LC+ R EA ++L EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 76/339 (22%), Positives = 134/339 (39%), Gaps = 52/339 (15%)
Query: 58 DEALSLFHRHHQMGSK---HSYPSYASL---IYKLARARDFDAVETVLGYIQDFNIRCKE 111
DEAL L+HR G + +++P I LAR R+ A G+ D ++
Sbjct: 169 DEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV---- 224
Query: 112 TLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDD 171
+LI Y K V A VF+RM DC+ S+N+++ +N + +F
Sbjct: 225 --VNALITMYVKCGDVVSARLVFDRMPRRDCI----SWNAMISGYFENGECLEGLELFFT 278
Query: 172 ADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGE 231
++ P+L++ +I G+ + +++ V NSLI G
Sbjct: 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338
Query: 232 MGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGV 291
G+A+ +F M K +AV++ ++ G G ++A + M P +
Sbjct: 339 WGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394
Query: 292 LMS--------DLG-KRGKIEEAKSLLS----------------------EMKKRQYKPD 320
++S D+G K ++ E K L+S E+ + D
Sbjct: 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD 454
Query: 321 VVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATY 359
V+++ +I L +R EA +M + KPN+ T
Sbjct: 455 VISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTL 492
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 73/349 (20%), Positives = 136/349 (38%), Gaps = 49/349 (14%)
Query: 116 SLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM 175
SLIQ Y +A +VF+RM + D V S+ +++ N D A + ++
Sbjct: 328 SLIQMYLSLGSWGEAEKVFSRMETKDAV----SWTAMISGYEKNGLPDKALETYALMEQD 383
Query: 176 GFRPNLISFNVMIK-----GRLKKG----EWEEASRVFDEMLEREVPPTVVTYNSLIGFL 226
P+ I+ ++ G L G E E + VV N+LI
Sbjct: 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS---------YVVVANALIEMY 434
Query: 227 CRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEA----KKMMFDMAYRGC 282
+ + KA +F ++ +K + +++ ++ GL EA ++M+ +
Sbjct: 435 SKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLTL----- 485
Query: 283 KPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYK 342
KP V +S + G + K + + + + D N L++ + R A+
Sbjct: 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWN 545
Query: 343 VLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLL 402
Q + + ++ +++ G++ ++++ N M+ S P TF LL
Sbjct: 546 -----QFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600
Query: 403 KGGKVDDACFVLEEME-KRKMRFDLKAWEGLVTDACIGD--GNAGGLVE 448
+ G V ME K + +LK + AC+ D G AG L E
Sbjct: 601 RSGMVTQGLEYFHSMEEKYSITPNLKHY------ACVVDLLGRAGKLTE 643
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 4e-07
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 212 VPPTVVTYNSLIGFLCRTGEMGKAKGLFEDM 242
+ P VVTYN+LI LCR G + +A L ++M
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 7e-06
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 217 VTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNA 251
VTYN+LI LC+ G + +A LF++M ++G P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 322 VTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA 356
VTYN LI+ LCK R EA ++ EM+ G +P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.4 bits (96), Expect = 3e-05
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 175 MGFRPNLISFNVMIKGRLKKGEWEEASRVFDEM 207
G +P+++++N +I G + G +EA + DEM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 3e-05
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 217 VTYNSLIGFLCRTGEMGKAKGLFEDMIKKG 246
VTYNSLI C+ G++ +A LF++M +KG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 4e-05
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 182 ISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTV 216
+++N +I G K G EEA +F EM ER + P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 64/308 (20%), Positives = 128/308 (41%), Gaps = 21/308 (6%)
Query: 116 SLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM 175
++I Y K L DKA+E + M + + S+L +D ++ + A++
Sbjct: 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK 418
Query: 176 GFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKA 235
G ++ N +I+ K ++A VF + E++V +++ S+I L +A
Sbjct: 419 GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV----ISWTSIIAGLRLNNRCFEA 474
Query: 236 KGLFEDMIKKGTYPNAVTY-----ALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFG 290
F M+ PN+VT A G G+ A + + + G P
Sbjct: 475 LIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN----- 528
Query: 291 VLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIG 350
L+ + G++ A + + +K DVV++NIL+ + + A ++ M
Sbjct: 529 ALLDLYVRCGRMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGSMAVELFNRMVES 583
Query: 351 GCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRH-CPRLETFSCLLVGLLKGGKVDD 409
G P+ T+ ++ R L+ ++M P L+ ++C++ L + GK+ +
Sbjct: 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTE 643
Query: 410 ACFVLEEM 417
A + +M
Sbjct: 644 AYNFINKM 651
|
Length = 857 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.3 bits (100), Expect = 2e-04
Identities = 52/264 (19%), Positives = 91/264 (34%), Gaps = 5/264 (1%)
Query: 160 DRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVP-PTVVT 218
+ A + +A L + GE EA + +E LE
Sbjct: 2 KDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGL 61
Query: 219 YNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPN-AVTYALLMEGLCFKGEYNEAKKMMFDM 277
L L + G + +A L E ++ PN A L L G+Y EA +++
Sbjct: 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKA 121
Query: 278 AYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKK--RQYKPDVVTYNILINYLCKED 335
P L + + L + G EEA L + + + L L
Sbjct: 122 LALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG 181
Query: 336 RAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFS 395
R EA ++L + +A + +L++ +E +L+ L E
Sbjct: 182 RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP-DNAEALY 240
Query: 396 CLLVGLLKGGKVDDACFVLEEMEK 419
L + LL+ G+ ++A LE+ +
Sbjct: 241 NLALLLLELGRYEEALEALEKALE 264
|
Length = 291 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 116 SLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLD 154
+LI Y K V++A+++FN M + +++ L+D
Sbjct: 8 TLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 182 ISFNVMIKGRLKKGEWEEASRVFDEMLEREV 212
+++N +I G K G+ EEA +F EM E+ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.1 bits (89), Expect = 0.003
Identities = 45/263 (17%), Positives = 94/263 (35%), Gaps = 7/263 (2%)
Query: 50 DLKEIRDPDEALSLFHR-HHQMGSKHSYPSYASLIYKLARARDFD-AVETVLGYIQDFNI 107
L+ + + EAL L + + L L + + A+E + ++ +
Sbjct: 32 LLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELL 91
Query: 108 RCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKR 167
++L ++A+E+ + + D L L L + ++A
Sbjct: 92 PNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALE 151
Query: 168 MFDDADKMGFRPNLISFNVMIKGRL--KKGEWEEASRVFDEMLEREVPPTVVTYNSLIGF 225
+++ A ++ N ++ ++ G L G +EEA + ++ L+ +L
Sbjct: 152 LYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLL 211
Query: 226 LCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQ 285
+ G+ +A +E ++ NA L L G Y EA + + A P
Sbjct: 212 YLKLGKYEEALEYYEKALEL-DPDNAEALYNLALLLLELGRYEEALE-ALEKALEL-DPD 268
Query: 286 LVNFGVLMSDLGKRGKIEEAKSL 308
L N G+ + L K+
Sbjct: 269 LYNLGLALLLLLAEALELLEKAD 291
|
Length = 291 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.4 bits (80), Expect = 0.004
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 322 VTYNILINYLCKEDRAAEAYKVLTEMQIGGC 352
VTYN LI+ CK + EA ++ EM+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 491 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.98 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.98 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.85 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.85 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.79 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.76 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.72 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.71 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.71 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.69 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.68 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.68 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.67 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.67 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.66 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.65 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.65 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.65 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.64 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.63 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.62 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.59 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.59 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.59 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.58 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.58 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.55 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.51 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.51 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.49 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.45 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.45 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.44 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.43 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.42 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.42 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.41 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.41 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.39 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.39 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.39 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.37 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.36 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.36 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.29 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.29 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.27 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.25 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.22 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.22 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.21 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.21 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.19 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.18 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.17 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.17 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.16 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.14 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.14 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.13 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.13 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.12 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.11 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.08 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.02 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.02 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.99 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.99 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.97 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.93 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.91 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.9 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.9 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.89 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.85 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.85 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.84 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.84 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.83 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.81 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.76 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.73 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.72 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.7 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.67 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.65 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.62 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.62 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.62 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.61 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.61 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.6 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.6 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.59 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.59 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.59 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.58 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.58 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.54 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.52 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.52 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.48 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.46 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.46 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.39 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.36 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.35 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.34 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.28 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.2 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.18 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.18 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.15 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.15 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.12 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.06 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.05 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.04 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.02 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.0 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.0 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.99 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.86 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.82 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.81 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.81 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.77 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.77 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.77 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.75 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.74 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.73 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.7 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.7 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.69 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.69 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.67 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.66 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.66 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.65 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.64 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.64 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.63 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.6 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.6 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.59 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.58 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.56 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.55 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.54 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.53 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.52 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.51 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.49 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.47 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.45 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.45 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.43 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.42 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.41 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.41 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.39 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.38 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.35 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.32 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.31 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.3 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.28 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.25 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.23 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.22 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.22 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.2 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.15 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.13 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.12 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.1 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.03 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.01 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.0 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.95 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.76 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.7 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.65 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.64 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.63 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.58 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.56 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.5 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.49 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.46 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.43 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.39 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.36 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.33 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.32 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.32 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.28 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.15 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.13 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.12 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.04 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.0 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.95 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.95 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.88 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.64 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.64 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.58 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.41 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.39 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.38 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.37 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.34 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.32 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.28 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.26 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.04 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.03 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.02 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.89 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.85 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.8 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.75 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.6 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.6 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.56 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.53 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.5 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.41 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.28 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.23 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.23 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.21 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 94.17 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.07 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.05 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.03 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.97 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.83 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.83 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.58 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.26 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.02 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.99 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.97 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.94 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.75 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.62 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.38 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.33 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.24 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 92.24 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.11 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.08 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.05 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.01 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 91.99 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.96 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 91.89 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.85 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.63 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.37 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.19 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 91.0 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.73 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 90.68 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.56 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 90.53 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.33 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 90.05 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.88 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.87 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.78 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.66 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 89.63 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 89.46 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.32 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.23 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.19 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.13 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 88.97 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.56 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 88.25 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.82 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.63 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 87.49 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 86.52 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 86.43 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.25 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.08 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 85.81 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.72 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 85.18 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 85.09 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 84.93 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 84.64 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.54 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 83.87 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 83.31 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 82.2 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 81.6 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 81.59 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.31 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 80.57 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 80.42 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 80.3 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-62 Score=494.44 Aligned_cols=438 Identities=19% Similarity=0.272 Sum_probs=393.1
Q ss_pred CcchHHHhhhcCChHHHHHHHHHhhhCCCC--------------------------------CCHHhHHHHHHHHHhcCC
Q 041882 44 PIPFVNDLKEIRDPDEALSLFHRHHQMGSK--------------------------------HSYPSYASLIYKLARARD 91 (491)
Q Consensus 44 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~--------------------------------~~~~~~~~ll~~~~~~~~ 91 (491)
...+...+++.|++++|+++|++|...|+. ||..+|+.++.+|++.|+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~ 452 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQD 452 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcC
Confidence 345777788889999999999999887753 677889999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHH
Q 041882 92 FDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDD 171 (491)
Q Consensus 92 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 171 (491)
++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 041882 172 ADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLE--REVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYP 249 (491)
Q Consensus 172 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 249 (491)
|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999976 5788999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 041882 250 NAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILIN 329 (491)
Q Consensus 250 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 329 (491)
+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.||..+|+.+|.
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ 692 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHH
Q 041882 330 YLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDD 409 (491)
Q Consensus 330 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 409 (491)
+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++
T Consensus 693 ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------------------------CCCcchhHHHHHHhhhhhhhhhhHHH
Q 041882 410 ACFVLEEMEKRKMRFDLKAWEGLVTDACIG------------------------DGNAGGLVEIRDMRDYSMAISSVMNV 465 (491)
Q Consensus 410 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~------------------------~~~~~~~~~~~~m~~~~~~~~~~~~~ 465 (491)
|.+++++|.+.|+.||..+|++++.. |.. +....++..+++|.+.|+.|+.....
T Consensus 773 A~~l~~~M~k~Gi~pd~~tynsLIgl-c~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~ 851 (1060)
T PLN03218 773 GLDLLSQAKEDGIKPNLVMCRCITGL-CLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLS 851 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH-HHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHH
Confidence 99999999999999999999999864 331 11245788899999999999876655
Q ss_pred HHHHHHhcCCCcchhhhh
Q 041882 466 VDLLWTYLGMGTCVVIDL 483 (491)
Q Consensus 466 ~~l~~~~~~~g~~~~~~~ 483 (491)
.-++ -+...+....+..
T Consensus 852 ~vL~-cl~~~~~~~~~~~ 868 (1060)
T PLN03218 852 QVLG-CLQLPHDATLRNR 868 (1060)
T ss_pred HHHH-HhcccccHHHHHH
Confidence 5443 3444454444433
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-62 Score=491.14 Aligned_cols=431 Identities=21% Similarity=0.258 Sum_probs=400.0
Q ss_pred CCCCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 041882 41 TKEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQH 120 (491)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (491)
...++.++..+++.|+++.|+++|+.|.+.|+.||..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~g 516 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHH--CCCCCCHHhHHHHHHHHHhcCChH
Q 041882 121 YGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADK--MGFRPNLISFNVMIKGRLKKGEWE 198 (491)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~p~~~~~~~ll~~~~~~~~~~ 198 (491)
|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|+++
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999999999999999999999999999999999986 578999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 041882 199 EASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMA 278 (491)
Q Consensus 199 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (491)
+|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.
T Consensus 597 eA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 597 RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 041882 279 YRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAAT 358 (491)
Q Consensus 279 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 358 (491)
+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.++.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 677 k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----C-------------------CCHHHHHHHHH
Q 041882 359 YRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLK----G-------------------GKVDDACFVLE 415 (491)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~ 415 (491)
|+.++.+|++.|+++.|.+++++|.+.|+.||..+|+.++..|.+ + +..++|..+|+
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYR 836 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHH
Confidence 999999999999999999999999999999999999999876432 1 22467999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHh
Q 041882 416 EMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTY 472 (491)
Q Consensus 416 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~ 472 (491)
+|.+.|+.||..+|+.++.+++..++...+...++.|...+..|+ ...+..+..-+
T Consensus 837 eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~-~~~y~~Li~g~ 892 (1060)
T PLN03218 837 ETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQK-QSNLSTLVDGF 892 (1060)
T ss_pred HHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcc-hhhhHHHHHhh
Confidence 999999999999999999877766665555555555554444343 34455555544
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-61 Score=483.68 Aligned_cols=428 Identities=20% Similarity=0.258 Sum_probs=396.4
Q ss_pred CCcchHHHhhhcCChHHHHHHHHHhhhCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 041882 43 EPIPFVNDLKEIRDPDEALSLFHRHHQMG-SKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHY 121 (491)
Q Consensus 43 ~~~~~~~~l~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (491)
.|...+..+.+.|++++|+++|++|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.|+..+++.++..|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 56778899999999999999999998764 68999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHH-------------------
Q 041882 122 GKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLI------------------- 182 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~------------------- 182 (491)
++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.|+.||..
T Consensus 169 ~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred hcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 999999999999999975 799999999999999999999999999998777666554
Q ss_pred ----------------hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041882 183 ----------------SFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKG 246 (491)
Q Consensus 183 ----------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 246 (491)
+|+.|+.+|++.|++++|.++|+.|.. +|..+||.++.+|++.|++++|.++|++|.+.|
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 456777888899999999999998865 488999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 041882 247 TYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNI 326 (491)
Q Consensus 247 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 326 (491)
+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.|+.+|++.|++++|.++|++|.+ ||..+||.
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~ 396 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNA 396 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999865 58899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHhHHHHHHHHHcCC
Q 041882 327 LINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT-SRHCPRLETFSCLLVGLLKGG 405 (491)
Q Consensus 327 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g 405 (491)
||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ .|+.|+..+|+.++++|++.|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999986 489999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhhHh
Q 041882 406 KVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDLFQ 485 (491)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 485 (491)
++++|.+++++| ++.|+..+|++|+.+++..|+.+.+...++++.+ ++|++...+..+...|.+.|+|+++..++
T Consensus 477 ~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 477 LLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred CHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 999999998765 5789999999999999999998888888888754 45888888999999999999999999987
Q ss_pred hh
Q 041882 486 KR 487 (491)
Q Consensus 486 k~ 487 (491)
+.
T Consensus 552 ~~ 553 (697)
T PLN03081 552 ET 553 (697)
T ss_pred HH
Confidence 64
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-59 Score=478.09 Aligned_cols=430 Identities=18% Similarity=0.228 Sum_probs=368.0
Q ss_pred CCCCCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041882 40 KTKEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQ 119 (491)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 119 (491)
....|+.++..+.+.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++.+.+++..+.+.|+.||..+|+.++.
T Consensus 252 d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~ 331 (857)
T PLN03077 252 DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQ 331 (857)
T ss_pred CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHH
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHH
Q 041882 120 HYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEE 199 (491)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 199 (491)
+|++.|++++|.++|++|.. ||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.
T Consensus 332 ~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 407 (857)
T PLN03077 332 MYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407 (857)
T ss_pred HHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHH
Confidence 99999999999999999975 68889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-
Q 041882 200 ASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMA- 278 (491)
Q Consensus 200 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~- 278 (491)
|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.
T Consensus 408 a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999998888888888888888888888888888777754 244455555555555555555555555554
Q ss_pred ---------------------------------HcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 041882 279 ---------------------------------YRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYN 325 (491)
Q Consensus 279 ---------------------------------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 325 (491)
+.|+.++..++++++.+|+++|++++|.++|+.+ .+|..+||
T Consensus 484 ~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n 558 (857)
T PLN03077 484 TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWN 558 (857)
T ss_pred CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHH
Confidence 4444455555555566666666667776666665 46888999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHhHHHHHHHHHcC
Q 041882 326 ILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAML-TSRHCPRLETFSCLLVGLLKG 404 (491)
Q Consensus 326 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 404 (491)
.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|+.++.+|++.
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~ 638 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999998 568899999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhhH
Q 041882 405 GKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDLF 484 (491)
Q Consensus 405 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 484 (491)
|++++|.+++++|. ++||..+|++|+.+|...++.+.+....+++.+ ++|++...++.++++|...|+|+++...
T Consensus 639 G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~v 713 (857)
T PLN03077 639 GKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARV 713 (857)
T ss_pred CCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHH
Confidence 99999999999884 789999999999986666665555444555554 5699999999999999999999999999
Q ss_pred hhh
Q 041882 485 QKR 487 (491)
Q Consensus 485 ~k~ 487 (491)
|+.
T Consensus 714 r~~ 716 (857)
T PLN03077 714 RKT 716 (857)
T ss_pred HHH
Confidence 864
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=468.48 Aligned_cols=439 Identities=18% Similarity=0.204 Sum_probs=337.2
Q ss_pred CCCCCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041882 40 KTKEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQ 119 (491)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 119 (491)
....|+.++..+.+.|++++|+.+|++|...|+.||..+|+.++.+|+..+++..+.+++..+.+.|+.++..+++.++.
T Consensus 151 d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~ 230 (857)
T PLN03077 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALIT 230 (857)
T ss_pred CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHH
Confidence 34457788888999999999999999999889999999999999888888888888888888888888888888899999
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHH
Q 041882 120 HYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEE 199 (491)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 199 (491)
+|++.|+++.|.++|++|.. +|..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.
T Consensus 231 ~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~ 306 (857)
T PLN03077 231 MYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL 306 (857)
T ss_pred HHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Confidence 99999999999999998875 67788888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 041882 200 ASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAY 279 (491)
Q Consensus 200 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (491)
+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|.++|++|.+
T Consensus 307 a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 888888888888878877777777777777777777777777642 4666777777777777777777777777777
Q ss_pred cCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------
Q 041882 280 RGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQI---------- 349 (491)
Q Consensus 280 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---------- 349 (491)
.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi 462 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSII 462 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHH
Confidence 7777777777777777777777777777666666666666666666666666666666666555555432
Q ss_pred --------------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----------------------
Q 041882 350 --------------------GGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRH---------------------- 387 (491)
Q Consensus 350 --------------------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------------------- 387 (491)
.++.||..||+.++.+|++.|+.+.+.+++..+.+.|+
T Consensus 463 ~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~ 542 (857)
T PLN03077 463 AGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542 (857)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHH
Confidence 13455555555555444444444444444333333332
Q ss_pred --------CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHh-hhhhh
Q 041882 388 --------CPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMR-DYSMA 458 (491)
Q Consensus 388 --------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~-~~~~~ 458 (491)
.+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|..+++.+.++.|. +.|+.
T Consensus 543 A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~ 622 (857)
T PLN03077 543 AWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622 (857)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence 356667888888888888888899999999988899999999999998888888888888888888 67888
Q ss_pred hhhhHHHHHHHHHhcCCCcchhhhhHhhh
Q 041882 459 ISSVMNVVDLLWTYLGMGTCVVIDLFQKR 487 (491)
Q Consensus 459 ~~~~~~~~~l~~~~~~~g~~~~~~~~~k~ 487 (491)
|+. ..+..+...|.+.|+.+++..+-++
T Consensus 623 P~~-~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 623 PNL-KHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred Cch-HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 865 5567777888888888888877553
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-54 Score=433.82 Aligned_cols=400 Identities=17% Similarity=0.232 Sum_probs=279.4
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHH
Q 041882 72 SKHSYPSYASLIYKLARARDFDAVETVLGYIQDFN-IRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFN 150 (491)
Q Consensus 72 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 150 (491)
...+..+|+.++..+.+.|++++|.++|++|...+ ..|+..+|+.++.+|++.++++.+.+++..|...|+.||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34566789999999999999999999999999765 67999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH--------
Q 041882 151 SLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSL-------- 222 (491)
Q Consensus 151 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------- 222 (491)
.++.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999997 489999999999999999999999999999888777776666554
Q ss_pred ---------------------------HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 041882 223 ---------------------------IGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMF 275 (491)
Q Consensus 223 ---------------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (491)
+.+|++.|++++|.++|+.|.. +|..+|+.++.+|++.|+.++|.++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5555555555555555555532 355555555555555555555555555
Q ss_pred HHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041882 276 DMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPN 355 (491)
Q Consensus 276 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 355 (491)
+|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 5555555555555666666665555555566665555555555555556666666666666666666655554 345
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 041882 356 AATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEK-RKMRFDLKAWEGLVT 434 (491)
Q Consensus 356 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~ 434 (491)
..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ .|+.|+..+|+.++.
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 5556666666666666666666666665555556666666666666666666666666666553 355566556666666
Q ss_pred HHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhhHhhh
Q 041882 435 DACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDLFQKR 487 (491)
Q Consensus 435 ~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~ 487 (491)
++++.|+.++|.+.+++| +..|+. ..+..+...+...|+.+.+...-++
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~-~~~~~Ll~a~~~~g~~~~a~~~~~~ 519 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTV-NMWAALLTACRIHKNLELGRLAAEK 519 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 666666555555555443 233433 3355555555555555555444433
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-27 Score=249.86 Aligned_cols=423 Identities=13% Similarity=0.077 Sum_probs=238.2
Q ss_pred hHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041882 47 FVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHL 126 (491)
Q Consensus 47 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 126 (491)
++..+.+.|++++|+.+++.+.... +.+...+..+...+...|++++|.+.|+.+.+.. +.+...+..+...+...|+
T Consensus 437 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~ 514 (899)
T TIGR02917 437 LILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGN 514 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCC
Confidence 4455566677777777776666532 4455667777777777777777777777776654 4455566666677777777
Q ss_pred HHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 041882 127 VDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDE 206 (491)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 206 (491)
+++|.+.|+++...+. .+..++..+...+...|+.++|..+++++...+ +.+...+..+...+...|++++|..+++.
T Consensus 515 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 592 (899)
T TIGR02917 515 PDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNE 592 (899)
T ss_pred HHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777777665542 255666666666666777777777776665543 22444555566666666666666666666
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCh
Q 041882 207 MLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQL 286 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 286 (491)
+.+.. +.+...|..+..++...|++++|...|+.+.+... .+...+..+..++...|++++|...++.+.+.. +.+.
T Consensus 593 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 669 (899)
T TIGR02917 593 AADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNT 669 (899)
T ss_pred HHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCH
Confidence 65542 33555666666666666666666666666665432 244555566666666666666666666665543 3334
Q ss_pred hcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041882 287 VNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGF 366 (491)
Q Consensus 287 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 366 (491)
..+..+...+...|++++|..+++.+.+.++. +...+..+...+...|++++|.+.++++... .|+..++..+..++
T Consensus 670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 746 (899)
T TIGR02917 670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHH
Confidence 45555555555566666666666555554332 4445555555555555555555555555543 23334444455555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchh
Q 041882 367 LRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGL 446 (491)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 446 (491)
...|++++|.+.++++.+.. +.+...+..+...|...|++++|..+|+++.+.. ..+...++.+...+...|+ .+++
T Consensus 747 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~ 823 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRAL 823 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHH
Confidence 55555555555555555432 2344445555555555555555555555555432 2234444444444444444 3344
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhhH
Q 041882 447 VEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDLF 484 (491)
Q Consensus 447 ~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 484 (491)
..+++.... .|+++..+..+++++...|++.++..+
T Consensus 824 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~ 859 (899)
T TIGR02917 824 EYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPL 859 (899)
T ss_pred HHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 444433332 144444444444444444444444444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-27 Score=249.72 Aligned_cols=431 Identities=12% Similarity=0.050 Sum_probs=379.2
Q ss_pred CcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 041882 44 PIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGK 123 (491)
Q Consensus 44 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (491)
+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.+ +.+..++..+...+.+
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 545 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLR 545 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 3456677888999999999999998764 5566788889999999999999999999999876 6678899999999999
Q ss_pred cCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHH
Q 041882 124 AHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRV 203 (491)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 203 (491)
.|++++|..+++++...+ +.+...+..++..+...|++++|..+++.+.+.. +.+...|..+..++...|++++|...
T Consensus 546 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 623 (899)
T TIGR02917 546 TGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSS 623 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998765 3477888999999999999999999999998764 45778899999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 041882 204 FDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCK 283 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (491)
|+.+.+... .+...+..+..++...|++++|..+|+++.+.. +.+..++..+...+...|++++|..+++.+.+.. +
T Consensus 624 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 700 (899)
T TIGR02917 624 FKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-P 700 (899)
T ss_pred HHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 999988643 367788999999999999999999999998864 3367889999999999999999999999999876 5
Q ss_pred CChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041882 284 PQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMV 363 (491)
Q Consensus 284 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 363 (491)
.+...+..+...+...|++++|...|+.+...+. +..++..++.++.+.|++++|.+.++++.+.. +.+...+..+.
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la 777 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALA 777 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 6677888889999999999999999999998754 44677788999999999999999999998764 66788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCc
Q 041882 364 DGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNA 443 (491)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 443 (491)
..|...|++++|...|+++.+.. +.+..++..+...+...|+ .+|...++++.+.. .-+...+..+...+...|+.+
T Consensus 778 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 778 ELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999874 4578889999999999999 88999999998763 335677888888899999999
Q ss_pred chhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhhHhhhhc
Q 041882 444 GGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDLFQKREM 489 (491)
Q Consensus 444 ~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~~~ 489 (491)
++...++++.+.+ |.++.....+++.|.+.|++.++..+.++.+
T Consensus 855 ~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 855 RALPLLRKAVNIA--PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHhhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999999876 7788999999999999999999998877643
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.4e-22 Score=178.58 Aligned_cols=429 Identities=13% Similarity=0.060 Sum_probs=209.1
Q ss_pred CCCCCCCCCCCCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH
Q 041882 33 QNHKTIRKTKEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKET 112 (491)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 112 (491)
+...+.........+...+-+.|++.+|++.....-+.+ +.+....-.+-..+.+..+++....--....+.. +.-.+
T Consensus 40 q~~~t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae 117 (966)
T KOG4626|consen 40 QFNKTHEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAE 117 (966)
T ss_pred HhccCCccchhHHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHH
Confidence 333444455556777888888999999998766544432 1122222222223333333333333222222222 33345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHH----------
Q 041882 113 LFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLI---------- 182 (491)
Q Consensus 113 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---------- 182 (491)
+|..+.+.+...|++++|+.+++.+.+.... ....|..+..++...|+.+.|.+.|.+.++. .|+..
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHH
Confidence 5555555555555555555555555554322 4455555555555555555555555554443 23332
Q ss_pred -------------------------hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 041882 183 -------------------------SFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKG 237 (491)
Q Consensus 183 -------------------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 237 (491)
.|..|...+...|+...|++.|++....+.. -...|-.|...|...+.+++|+.
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHH
Confidence 3344444444445555555555444443211 23344445555555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 041882 238 LFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQ-LVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQ 316 (491)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 316 (491)
.|.+...... .....+..+...|...|..+.|++.|++.++. .|+ ...|+.+..++-..|++.+|+..|++.....
T Consensus 274 ~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 274 CYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 5554443311 12334444444455555555555555555544 222 3445555555555555555555555555443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhH
Q 041882 317 YKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA-ATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPR-LETF 394 (491)
Q Consensus 317 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ 394 (491)
.. .....+.|...|...|.+++|..+|....+- .|.. ..++.|...|-++|++++|+..+++.+. +.|+ ...|
T Consensus 351 p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~ 425 (966)
T KOG4626|consen 351 PN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADAL 425 (966)
T ss_pred Cc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHH
Confidence 22 3444455555555555555555555555442 2322 2444555555555555555555555554 3343 3345
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhc
Q 041882 395 SCLLVGLLKGGKVDDACFVLEEMEKRKMRFD-LKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYL 473 (491)
Q Consensus 395 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~ 473 (491)
+.+...|-..|+.+.|.+.+.+.+. +.|. ...++.|.+.+-..|+..+++.-+++.... .|+.+....+++..+-
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHH
Confidence 5555555555555555555555553 2333 234455555555555555555555543332 2555555555554443
Q ss_pred CCCcch
Q 041882 474 GMGTCV 479 (491)
Q Consensus 474 ~~g~~~ 479 (491)
-.-+|.
T Consensus 502 ~vcdw~ 507 (966)
T KOG4626|consen 502 IVCDWT 507 (966)
T ss_pred HHhccc
Confidence 333333
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-21 Score=184.94 Aligned_cols=301 Identities=17% Similarity=0.161 Sum_probs=198.7
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhcCC
Q 041882 120 HYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPN---LISFNVMIKGRLKKGE 196 (491)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~ 196 (491)
.+...|++++|+..|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 44566777777777777776642 2556677777777777777777777777766432211 2345666777777777
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHhHHHH
Q 041882 197 WEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNA----VTYALLMEGLCFKGEYNEAKK 272 (491)
Q Consensus 197 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~ 272 (491)
++.|.++|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 777777777777642 235667777777777777777777777777765433221 234455556667777777777
Q ss_pred HHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041882 273 MMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGC 352 (491)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 352 (491)
.++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 777776653 23344556666777777777777777777766533323455667777777777777777777777664
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCCCCHH
Q 041882 353 KPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLK---GGKVDDACFVLEEMEKRKMRFDLK 427 (491)
Q Consensus 353 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 427 (491)
.|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..++++|.+.++.|++.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 355555566677777777777777777777664 3666666666665553 457777777777777666666554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-20 Score=192.90 Aligned_cols=426 Identities=11% Similarity=0.029 Sum_probs=274.0
Q ss_pred hHHHhhhcCChHHHHHHHHHhhhCCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 041882 47 FVNDLKEIRDPDEALSLFHRHHQMGSKHSYP-SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAH 125 (491)
Q Consensus 47 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 125 (491)
....+...|++++|++.|+.+.+.+ +++.. ............|++++|.+.++.+.+.. +.+...+..+...+...|
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccC
Confidence 3446778899999999999888754 34432 12122222234588999999999988876 667788888888888899
Q ss_pred CHHHHHHHHHHhhhCCCC------------------cC-HHHH----------------------------------HHH
Q 041882 126 LVDKAIEVFNRMTSFDCV------------------RT-LQSF----------------------------------NSL 152 (491)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~------------------~~-~~~~----------------------------------~~l 152 (491)
+.++|+..++++...... +. ...+ ...
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~ 275 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQ 275 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 999999988887542100 00 0000 011
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-ChhhHH-----------
Q 041882 153 LDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPP-TVVTYN----------- 220 (491)
Q Consensus 153 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~----------- 220 (491)
...+...|++++|+..|++..+.. +-+...+..+..++.+.|++++|+..|++..+..... ....|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 344566788999999999888763 2267778888888899999999999998888754321 111121
Q ss_pred -HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHH--------
Q 041882 221 -SLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGV-------- 291 (491)
Q Consensus 221 -~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------- 291 (491)
.....+.+.|++++|+..|+++.+... .+...+..+...+...|++++|++.|++..+.. +.+...+..
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 223456788889999999998887643 356677778888888899999999888887653 222222222
Q ss_pred ----------------------------------HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 292 ----------------------------------LMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRA 337 (491)
Q Consensus 292 ----------------------------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 337 (491)
+...+...|++++|.+.|++..+..+. +...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 223345678888888888888877554 667777788888888999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHH--------------------------------------------HHHhcCCHH
Q 041882 338 AEAYKVLTEMQIGGCKPNAATYRMMVD--------------------------------------------GFLRVEDFE 373 (491)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~li~--------------------------------------------~~~~~~~~~ 373 (491)
++|...++++.+.. +.+...+..+.. .+...|+++
T Consensus 512 ~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 99888888877542 222222222222 222333333
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHh
Q 041882 374 GSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMR 453 (491)
Q Consensus 374 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~ 453 (491)
+|..+++ . .+.+...+..+...+.+.|++++|+..|+++.+.. ..+...+..+...+...|+.+++.+.+....
T Consensus 591 eA~~~l~----~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 591 EAEALLR----Q-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHH----h-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 3333332 0 12334445556666666677777777777666542 2245566666666666666666666666444
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCCcchhhhhHhhh
Q 041882 454 DYSMAISSVMNVVDLLWTYLGMGTCVVIDLFQKR 487 (491)
Q Consensus 454 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~ 487 (491)
+. .|++......+++++.+.|+++++..+.++
T Consensus 665 ~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 665 AT--ANDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred cc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 33 356666666666666666666666655444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-20 Score=184.46 Aligned_cols=380 Identities=14% Similarity=0.044 Sum_probs=295.9
Q ss_pred CCCCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 041882 41 TKEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQH 120 (491)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (491)
....+-++..+.+.|+++.|+.+++...... +.+...+..++..+...|+++.|.+.++.+.... |.+...+..+...
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~ 119 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASV 119 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3445678889999999999999999988765 4456677777788888999999999999999887 6678889999999
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHH
Q 041882 121 YGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEA 200 (491)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 200 (491)
+...|++++|+..+++..... +.+...+..+..++...|++++|...++.+...... +...+..+ ..+...|++++|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHH
Confidence 999999999999999998865 336788999999999999999999999988765422 23333333 347889999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhH----HHHHHHH
Q 041882 201 SRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNE----AKKMMFD 276 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~ 276 (491)
...++.+......++...+..+..++...|++++|+..++++.+.... +...+..+...+...|++++ |...++.
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 999999887654445555566678889999999999999999987533 67788889999999999986 7999999
Q ss_pred HHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 041882 277 MAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA 356 (491)
Q Consensus 277 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 356 (491)
..+.. +.+...+..+...+...|++++|...+++..+..+. +...+..+..++.+.|++++|...++++.+. .|+.
T Consensus 276 Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~ 351 (656)
T PRK15174 276 ALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVT 351 (656)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccc
Confidence 88774 445678888999999999999999999999987655 6777888899999999999999999999875 3554
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 041882 357 A-TYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLE----TFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWE 430 (491)
Q Consensus 357 ~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 430 (491)
. .+..+..++...|++++|...|+++.+........ ....+-.++...+...+...+..++.-..-..|..+|+
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 430 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVAGRQSGIERDEWE 430 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHhcccccCChHHHH
Confidence 3 34445677889999999999999998863221122 22334444445555555545566655322233444444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-21 Score=175.52 Aligned_cols=381 Identities=16% Similarity=0.100 Sum_probs=319.0
Q ss_pred chHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 041882 46 PFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAH 125 (491)
Q Consensus 46 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 125 (491)
.+.+.+...|+.++|+.+++.+.+.. +...+.|..+..++...|+.+.|.+.|....+.+ +........+.......|
T Consensus 121 n~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgnLlka~G 198 (966)
T KOG4626|consen 121 NLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGNLLKAEG 198 (966)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhHHHHhhc
Confidence 37788889999999999999999864 4567789999999999999999999999999876 434455666777778889
Q ss_pred CHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCChHHHHHHH
Q 041882 126 LVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPN-LISFNVMIKGRLKKGEWEEASRVF 204 (491)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 204 (491)
++++|...+.+..+... --..+|..|.-.+-.+|+...|++.|++..+. .|+ ...|..|-..|...+.++.|...|
T Consensus 199 rl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 199 RLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred ccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 99999999988877542 24568999999999999999999999999875 444 467888999999999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 041882 205 DEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKP 284 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 284 (491)
.+...... .....+..+...|...|..+.|+..|++.++.... -+..|+.+..++-..|+..+|.+.|....... +.
T Consensus 276 ~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~ 352 (966)
T KOG4626|consen 276 LRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PN 352 (966)
T ss_pred HHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-Cc
Confidence 98877532 25678888999999999999999999999886332 46789999999999999999999999998874 44
Q ss_pred ChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 041882 285 QLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA-ATYRMMV 363 (491)
Q Consensus 285 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li 363 (491)
.....+.|..+|...|.+++|..+|....+-.+. -....+.|...|-+.|++++|+..+++..+ +.|+. ..|+.+.
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmG 429 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMG 429 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcc
Confidence 5677889999999999999999999999886333 456789999999999999999999999986 57776 5899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 041882 364 DGFLRVEDFEGSLKVLNAMLTSRHCPR-LETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFD-LKAWEGLVTDACIGDG 441 (491)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~ 441 (491)
..|-..|+.+.|.+.+.+++.. .|. ...++.|...|-..|++.+|++-++...+. +|| +..+-.++.++-...+
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHHHHhc
Confidence 9999999999999999999985 454 567889999999999999999999999964 555 2344444443333333
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-20 Score=195.14 Aligned_cols=428 Identities=12% Similarity=0.035 Sum_probs=325.9
Q ss_pred HHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-HHHH------------H
Q 041882 49 NDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCK-ETLF------------I 115 (491)
Q Consensus 49 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~ 115 (491)
..+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|.+.|+...+...... ...+ .
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 44567899999999999998764 55788899999999999999999999999887652221 1111 2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 041882 116 SLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKG 195 (491)
Q Consensus 116 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 195 (491)
.....+.+.|++++|+..|+++..... .+...+..+..++...|++++|++.|+++.+.. +.+...+..+...+. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hc
Confidence 234567789999999999999988753 367788889999999999999999999998763 224555666666664 46
Q ss_pred ChHHHHHHHHHHHhCCCC--------CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 196 EWEEASRVFDEMLEREVP--------PTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEY 267 (491)
Q Consensus 196 ~~~~a~~~~~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 267 (491)
+.++|..+++.+...... .....+..+...+...|++++|++.|++..+.... +...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 789999888765432100 11234556777888999999999999999987443 567788889999999999
Q ss_pred hHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH---------HHHHHHHHHHHhcCCHH
Q 041882 268 NEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDV---------VTYNILINYLCKEDRAA 338 (491)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~li~~~~~~~~~~ 338 (491)
++|...++++.+.. +.+...+..+...+...++.++|...++.+......++. ..+..+...+...|+.+
T Consensus 512 ~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 99999999998753 334444555555677889999999999876543222221 12334566788899999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 339 EAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
+|..+++. .+.+...+..+...+.+.|++++|+..|+++++.. +.+...+..++..|...|++++|.+.++.+.
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 99999872 25566677788889999999999999999999864 3467888999999999999999999999888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhh-h---hhhHHHHHHHHHhcCCCcchhhhhHhhhhc
Q 041882 419 KRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMA-I---SSVMNVVDLLWTYLGMGTCVVIDLFQKREM 489 (491)
Q Consensus 419 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~-~---~~~~~~~~l~~~~~~~g~~~~~~~~~k~~~ 489 (491)
+.. ..+...+..+..++...|+.+++.+.+++.....-+ | .+...+..++.++.+.|++.++..+.++.+
T Consensus 665 ~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 665 ATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred ccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 642 224556677777788899999999999887765311 1 133456677999999999999988876654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-21 Score=179.63 Aligned_cols=303 Identities=16% Similarity=0.140 Sum_probs=251.2
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHh
Q 041882 152 LLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPT---VVTYNSLIGFLCR 228 (491)
Q Consensus 152 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~ 228 (491)
....+...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|..
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3455677899999999999999874 23556888899999999999999999999987642221 2567888999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCh----hcHHHHHHHHHhcCChHH
Q 041882 229 TGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQL----VNFGVLMSDLGKRGKIEE 304 (491)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~ 304 (491)
.|++++|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999998763 346788999999999999999999999999886533221 234567778889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 305 AKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 305 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
|...++++.+.... +...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++.+
T Consensus 199 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999886543 56788889999999999999999999998753222245678889999999999999999999998
Q ss_pred CCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCCcchhHHHHHHhhhhhhhhh
Q 041882 385 SRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACI---GDGNAGGLVEIRDMRDYSMAISS 461 (491)
Q Consensus 385 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~~~~~~~~m~~~~~~~~~ 461 (491)
.. |+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..++. .|+..+++..+++|.+.++.|+.
T Consensus 278 ~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 278 EY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred hC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 64 66667788999999999999999999999875 6899999998887775 34788899999999998877653
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-19 Score=176.84 Aligned_cols=400 Identities=11% Similarity=-0.005 Sum_probs=264.0
Q ss_pred HHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 48 VNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLV 127 (491)
Q Consensus 48 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 127 (491)
-..+...|+++.|+..|++.+.. .|+...|..+..++.+.|+++.|.+.++...+.+ +.+...+..+..+|...|++
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 34556679999999999998874 5677888889999999999999999999999876 56778888999999999999
Q ss_pred HHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHH-------------HHH---C-----------CCCCC
Q 041882 128 DKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDD-------------ADK---M-----------GFRPN 180 (491)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-------------~~~---~-----------~~~p~ 180 (491)
++|+..|..+...+...+.. ...++..+........+...++. ... . ...++
T Consensus 211 ~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 211 ADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 99998887665433221211 11111111110000111111100 000 0 00000
Q ss_pred H-HhHHHHHHH---HHhcCChHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 041882 181 L-ISFNVMIKG---RLKKGEWEEASRVFDEMLERE--VPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTY 254 (491)
Q Consensus 181 ~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 254 (491)
. ..+..+... ....+++++|.+.|+...+.+ .+.....|+.+...+...|++++|+..+++.++.... +...|
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~ 368 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSY 368 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHH
Confidence 0 000000000 012356788888888877654 1224556777777788888888888888888775322 35567
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 041882 255 ALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKE 334 (491)
Q Consensus 255 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 334 (491)
..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...|++..+..+. +...+..+..++.+.
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHC
Confidence 777777888888888888888877764 445667777788888888888888888888876544 566777777888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------hHHHHHHHHHcCCCHH
Q 041882 335 DRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLE------TFSCLLVGLLKGGKVD 408 (491)
Q Consensus 335 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~ 408 (491)
|++++|+..+++..... +.+...+..+...+...|++++|+..|++.++.....+.. .++.....+...|+++
T Consensus 447 g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 447 GSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 88888888888877642 4456677777888888888888888888887753111111 1111222233468888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhh
Q 041882 409 DACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYS 456 (491)
Q Consensus 409 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~ 456 (491)
+|.+++++..+... .+...+..+...+...|+.++|+..+++..+..
T Consensus 526 eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 526 EAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 88888888776532 234567777888888888888888877765543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-19 Score=176.81 Aligned_cols=360 Identities=13% Similarity=0.065 Sum_probs=290.9
Q ss_pred hhhcCChHHHHHHHHHhhhCC--CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 041882 51 LKEIRDPDEALSLFHRHHQMG--SKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVD 128 (491)
Q Consensus 51 l~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 128 (491)
+.++.+++..--+|....+.. ...+......++..+.+.|+++.|..+++...... +.+...+..++......|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHH
Confidence 556677877777776554321 11223345666778889999999999999999876 556777777788888899999
Q ss_pred HHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 041882 129 KAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEML 208 (491)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 208 (491)
.|+..|+++....+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 99999999998763 377889999999999999999999999998863 2346678888999999999999999999887
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhc
Q 041882 209 EREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVN 288 (491)
Q Consensus 209 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 288 (491)
..... +...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|...++...+.. +.+...
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 76433 33344333 3478899999999999998876444455555666778899999999999999999875 456777
Q ss_pred HHHHHHHHHhcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041882 289 FGVLMSDLGKRGKIEE----AKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVD 364 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 364 (491)
+..+...+...|++++ |...|+++.+..+. +...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 8888999999999986 89999999987655 77899999999999999999999999998764 445667777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 365 GFLRVEDFEGSLKVLNAMLTSRHCPRL-ETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
++...|++++|...++++...+ |+. ..+..+..++...|++++|...|++..+.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999864 443 33444577889999999999999998865
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-18 Score=173.10 Aligned_cols=400 Identities=12% Similarity=-0.053 Sum_probs=291.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILV 157 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 157 (491)
.+......+.+.|+++.|.+.|+..... .|+...|..+..+|.+.|++++|++.+++..+.+. .+..+|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3556677888999999999999998876 45778899999999999999999999999988763 36789999999999
Q ss_pred hCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHh-------------------------C--
Q 041882 158 DNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLE-------------------------R-- 210 (491)
Q Consensus 158 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------------------------~-- 210 (491)
..|++++|+..|..+...+-. +......++..+........+...++.-.. .
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 999999999988766544211 111111111111111001111111110000 0
Q ss_pred CCCCC-hhhHHHHHHH---HHhcCChhHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 041882 211 EVPPT-VVTYNSLIGF---LCRTGEMGKAKGLFEDMIKKG-TYP-NAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKP 284 (491)
Q Consensus 211 ~~~~~-~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 284 (491)
...+. ...+..+... ....+++++|.+.|+...+.+ ..| ....+..+...+...|++++|...++...+.. +.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~ 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 00000 0001111111 122467999999999998764 223 45667888888899999999999999998763 33
Q ss_pred ChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041882 285 QLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVD 364 (491)
Q Consensus 285 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 364 (491)
....|..+...+...|++++|...|+.+.+.++. +...|..+...+...|++++|...|++..+.. +.+...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHH
Confidence 3567788888899999999999999999887554 68899999999999999999999999998764 445677788888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-----H-HHHHHHHHHHh
Q 041882 365 GFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDL-----K-AWEGLVTDACI 438 (491)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~-~~~~ll~~~~~ 438 (491)
.+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|...|++..+..-..+. . .++..+..+..
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999998853 345788899999999999999999999998865321111 1 11222222233
Q ss_pred cCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhhHhhh
Q 041882 439 GDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDLFQKR 487 (491)
Q Consensus 439 ~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~ 487 (491)
.+++.++...+++.... .|++...+..+++++..+|++.++..+..+
T Consensus 521 ~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 521 KQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred hhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 57788888888776654 488888999999999999999998877554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-17 Score=168.11 Aligned_cols=407 Identities=12% Similarity=0.005 Sum_probs=306.8
Q ss_pred CCCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 041882 42 KEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHY 121 (491)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (491)
......+......|+.++|++++....... +.+...+..+...+.+.|++++|.++++...+.. +.+...+..+...+
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l 93 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 334557777888999999999999988633 4556679999999999999999999999998876 66788888999999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 041882 122 GKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEAS 201 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 201 (491)
...|++++|+..++++.... +.+.. +..+..++...|+.++|+..++++.+.... +...+..+..++...+..+.|+
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHH
Confidence 99999999999999998875 33666 888999999999999999999999987422 4555666777888889999999
Q ss_pred HHHHHHHhCCCCCCh------hhHHHHHHHHH-----hcCCh---hHHHHHHHHHHHc-CCCCCHH-HH----HHHHHHH
Q 041882 202 RVFDEMLEREVPPTV------VTYNSLIGFLC-----RTGEM---GKAKGLFEDMIKK-GTYPNAV-TY----ALLMEGL 261 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~ll~~~ 261 (491)
+.++.+.. .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ...+.++
T Consensus 171 ~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 171 GAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 99887654 1221 11222233222 12234 7788888888864 2222221 11 1113445
Q ss_pred HhcCCHhHHHHHHHHHHHcCCC-CChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCH
Q 041882 262 CFKGEYNEAKKMMFDMAYRGCK-PQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKP---DVVTYNILINYLCKEDRA 337 (491)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~ 337 (491)
...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+..|+.+....... .......+..++...|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 6779999999999999887532 322 22335778999999999999999987754321 134566677788999999
Q ss_pred HHHHHHHHHHHhCC-----------CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 041882 338 AEAYKVLTEMQIGG-----------CKPNA---ATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLK 403 (491)
Q Consensus 338 ~~a~~~~~~~~~~~-----------~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 403 (491)
++|..+++.+.... -.|+. ..+..+...+...|+.++|+++++++.... +.+...+..+...+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 99999999988642 11232 245566778889999999999999998863 4467888999999999
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhh
Q 041882 404 GGKVDDACFVLEEMEKRKMRFD-LKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSV 462 (491)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~ 462 (491)
.|++++|++.+++..+. .|+ ...+......+...++++++...++++++.. |+++
T Consensus 406 ~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~--Pd~~ 461 (765)
T PRK10049 406 RGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE--PQDP 461 (765)
T ss_pred cCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCH
Confidence 99999999999999975 454 5566666667788889999999998888765 6653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-17 Score=167.64 Aligned_cols=415 Identities=14% Similarity=0.077 Sum_probs=314.2
Q ss_pred HHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 041882 61 LSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSF 140 (491)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 140 (491)
+..++. .. ..+.++.-....+......|+.++|++++....... +.+...+..+...+...|++++|.++|++....
T Consensus 2 ~~~~~~-~~-~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 2 LSWLRQ-AL-KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred chhhhh-hh-ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555 22 235666777888889999999999999999998744 566778999999999999999999999998876
Q ss_pred CCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHH
Q 041882 141 DCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYN 220 (491)
Q Consensus 141 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 220 (491)
. +.+...+..+..++...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+.... +...+.
T Consensus 79 ~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~ 154 (765)
T PRK10049 79 E-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPT 154 (765)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 5 3367788899999999999999999999998873 33455 888888999999999999999999997544 666777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH-----hcCCH---hHHHHHHHHHHHc-CCCCC
Q 041882 221 SLIGFLCRTGEMGKAKGLFEDMIKKGTYPNA------VTYALLMEGLC-----FKGEY---NEAKKMMFDMAYR-GCKPQ 285 (491)
Q Consensus 221 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~ 285 (491)
.+..++...+..++|++.++.... .|+. ......+.... ..+++ +.|+..++.+.+. ...|+
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 788888899999999999987654 2221 11122222222 22234 6788888888854 22232
Q ss_pred hh-cHH----HHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CH
Q 041882 286 LV-NFG----VLMSDLGKRGKIEEAKSLLSEMKKRQYK-PDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKP---NA 356 (491)
Q Consensus 286 ~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~ 356 (491)
.. .+. ..+.++...|++++|+..|+.+.+.+.. |+. .-..+..+|...|++++|+..|+++.+..-.. ..
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~ 310 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSD 310 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCCh
Confidence 21 111 1133456779999999999999887532 332 22225778999999999999999987643111 13
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC---HHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041882 357 ATYRMMVDGFLRVEDFEGSLKVLNAMLTSRH-----------CPR---LETFSCLLVGLLKGGKVDDACFVLEEMEKRKM 422 (491)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 422 (491)
.....+..++...|++++|..+++.+.+... .|+ ...+..+...+...|+.++|+.+++++... .
T Consensus 311 ~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~ 389 (765)
T PRK10049 311 EELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-A 389 (765)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence 4566677788999999999999999987531 122 234566778899999999999999999875 3
Q ss_pred CCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhhHhhhhc
Q 041882 423 RFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDLFQKREM 489 (491)
Q Consensus 423 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~~~ 489 (491)
+.+...+..+...+...|+.+++++.+++..... |++......++..+.+.|++.+++...++.+
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4457788888888889999999999998776654 9999999999999999999999988766543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-16 Score=155.20 Aligned_cols=430 Identities=11% Similarity=0.039 Sum_probs=307.6
Q ss_pred HHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 48 VNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLV 127 (491)
Q Consensus 48 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 127 (491)
+....+.|+++.|+..|++..+....-.+..+ .++..+...|+.++|+..+++..... +........+...+...|++
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCH
Confidence 34457789999999999999875422112334 88888889999999999999998322 33445555557789999999
Q ss_pred HHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 128 DKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEM 207 (491)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 207 (491)
++|+++|+++.+..+. +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++
T Consensus 119 d~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 9999999999988744 6788888899999999999999999999876 466666644444444456666699999999
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH------HHHHHHH-HH----hcCCH---hHHHHH
Q 041882 208 LEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVT------YALLMEG-LC----FKGEY---NEAKKM 273 (491)
Q Consensus 208 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~ll~~-~~----~~~~~---~~a~~~ 273 (491)
.+.... +...+..+..+..+.|-...|.++..+-... +.+...- ....++. .. ...++ +.|..-
T Consensus 196 l~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 196 VRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 998533 7888888999999999999988777664321 1111100 0111110 00 11222 334444
Q ss_pred HHHHHHc-CCCCCh-hcH----HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041882 274 MFDMAYR-GCKPQL-VNF----GVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEM 347 (491)
Q Consensus 274 ~~~~~~~-~~~~~~-~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 347 (491)
++.+... +-.|.. ..| .-.+-++...+++.++++.|+.+...+.+....+-..+.++|...+++++|..+++.+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 4554432 112321 122 2335567788899999999999998876656667888899999999999999999988
Q ss_pred HhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC--H-HhHHHHHHHHHcCCCHH
Q 041882 348 QIGG-----CKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRH-----------CPR--L-ETFSCLLVGLLKGGKVD 408 (491)
Q Consensus 348 ~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~--~-~~~~~l~~~~~~~g~~~ 408 (491)
.... ..++......|.-++...+++++|..+++.+.+... .|+ - ..+..++..+...|+..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 6542 122334456788888999999999999999987311 122 1 23445667788899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhhHhhh
Q 041882 409 DACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDLFQKR 487 (491)
Q Consensus 409 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~ 487 (491)
+|.+.++++... -+-|...+..+-..+...|+...+...++..... .|++......+++++-++|+|..++.....
T Consensus 434 ~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 434 TAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 999999999865 3447788888888878888888888887544444 599989999999999999999988776544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-16 Score=158.42 Aligned_cols=184 Identities=10% Similarity=-0.044 Sum_probs=130.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041882 297 GKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSL 376 (491)
Q Consensus 297 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 376 (491)
...|++++|...|+++... .|+...+..+..++.+.|++++|...+++..+.. +.+...+..+.......|++++|.
T Consensus 520 ~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHH
Confidence 4566666666666665443 2233344555566667777777777777776543 223333333334444568888888
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhh
Q 041882 377 KVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYS 456 (491)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~ 456 (491)
..+++.++. .|+...+..+..++.+.|++++|...+++..+.. +.+...++.+..++...|+.++++..+++..+..
T Consensus 597 ~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 597 NDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 888888875 3667788888888899999999999999988753 2245667777777888888888888887766654
Q ss_pred hhhhhhHHHHHHHHHhcCCCcchhhhhHhhhh
Q 041882 457 MAISSVMNVVDLLWTYLGMGTCVVIDLFQKRE 488 (491)
Q Consensus 457 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~~ 488 (491)
|+++..+..+++++...|++.++..+.++.
T Consensus 674 --P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 674 --PDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 899999999999999999999888776654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-16 Score=159.01 Aligned_cols=414 Identities=12% Similarity=0.031 Sum_probs=261.0
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041882 54 IRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEV 133 (491)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 133 (491)
.|++++|+..|+...+.. +.+..++..+...+.+.|++++|+..+++..+.. +.|...+..+ ..+ +++.+|..+
T Consensus 57 ~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA~~~ 130 (987)
T PRK09782 57 NNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKSVTT 130 (987)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhHHHH
Confidence 499999999999998876 4557888899999999999999999999998875 3444544444 222 888888888
Q ss_pred HHHhhhCCCCcCHHHHHHHHHH--------HHhCCChhhHHHHHHHHHHCCCCCCHHhHHHH-HHHHHhcCChHHHHHHH
Q 041882 134 FNRMTSFDCVRTLQSFNSLLDI--------LVDNDRVDDAKRMFDDADKMGFRPNLISFNVM-IKGRLKKGEWEEASRVF 204 (491)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~ll~~--------~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~ 204 (491)
++++...... +..++..+... |.+. +.|.+.++ .......|+..+.... .+.|.+.|++++|++++
T Consensus 131 ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 131 VEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 8888776532 44444444443 3333 33333333 2222222333333333 55666666666666666
Q ss_pred HHHHhCCC------------------------------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHH
Q 041882 205 DEMLEREV------------------------------PPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTY-PNAVT 253 (491)
Q Consensus 205 ~~~~~~~~------------------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 253 (491)
.++.+.+. .-+...+..+...|.+.|+.++|.++++++...-.. |...+
T Consensus 206 ~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~ 285 (987)
T PRK09782 206 NEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKS 285 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHH
Confidence 55554422 234555566777777778888888887776432111 11111
Q ss_pred HHH------------------------------HHHH-------------------------------------------
Q 041882 254 YAL------------------------------LMEG------------------------------------------- 260 (491)
Q Consensus 254 ~~~------------------------------ll~~------------------------------------------- 260 (491)
+.. ++..
T Consensus 286 ~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 365 (987)
T PRK09782 286 WLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLA 365 (987)
T ss_pred HHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHH
Confidence 000 0011
Q ss_pred --------------------HHhcCCHhHHHHHHHHHHHc-C-C------------------------------------
Q 041882 261 --------------------LCFKGEYNEAKKMMFDMAYR-G-C------------------------------------ 282 (491)
Q Consensus 261 --------------------~~~~~~~~~a~~~~~~~~~~-~-~------------------------------------ 282 (491)
..+.|+.++|.++++..... + .
T Consensus 366 ~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 445 (987)
T PRK09782 366 RLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLA 445 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccc
Confidence 12334444454444433321 0 0
Q ss_pred --------------------------CC--ChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 041882 283 --------------------------KP--QLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKE 334 (491)
Q Consensus 283 --------------------------~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 334 (491)
++ +...+..+..++.. ++.++|...+.+..... |+......+...+...
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~ 522 (987)
T PRK09782 446 EQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQV 522 (987)
T ss_pred hhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHC
Confidence 00 11122222222222 45555666555555442 3433333334444578
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHH
Q 041882 335 DRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVL 414 (491)
Q Consensus 335 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 414 (491)
|++++|...|+++... +|+...+..+..++.+.|++++|...+++..+.. +.+...+..+...+.+.|++++|...+
T Consensus 523 Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~ 599 (987)
T PRK09782 523 EDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDL 599 (987)
T ss_pred CCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 8889998888887553 4555556666777888899999999999888764 223334444444555679999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhhHhhhh
Q 041882 415 EEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDLFQKRE 488 (491)
Q Consensus 415 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~~ 488 (491)
++..+. .|+...|..+..++.+.|+.++++..+.+..+.. |++......+++++...|+++++.....+.
T Consensus 600 ~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 600 TRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE--PNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred HHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999864 5678888899889999999999999998877665 999999999999999999999887765543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.6e-15 Score=128.38 Aligned_cols=404 Identities=14% Similarity=0.157 Sum_probs=290.6
Q ss_pred HHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHH--hcCChhHH-HHHHHHHHhc-------------------
Q 041882 48 VNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLA--RARDFDAV-ETVLGYIQDF------------------- 105 (491)
Q Consensus 48 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~------------------- 105 (491)
+-.+...|...++.-+|+.|.+.|+..+...-..|++.-+ ...+..-+ .+.|-.|...
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E 201 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFE 201 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHh
Confidence 3345667999999999999999998888877666665433 22222211 1111111111
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHH
Q 041882 106 NIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFN 185 (491)
Q Consensus 106 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 185 (491)
-.+-+..++..+|.++++--..++|.+++++-.......+..+||.+|.+-.-... .+++.+|....+.||..|||
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHH
Confidence 12456788999999999999999999999998877777899999999987654333 78999999999999999999
Q ss_pred HHHHHHHhcCChHH----HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhH-HHHHHHHHHHc--C--C----CCCHH
Q 041882 186 VMIKGRLKKGEWEE----ASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGK-AKGLFEDMIKK--G--T----YPNAV 252 (491)
Q Consensus 186 ~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~--~--~----~~~~~ 252 (491)
.++++..+.|+++. |.+++.+|.+.|+.|+..+|..+|..+++.+++.+ +..++.++... | + +-|..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 99999999998765 56688889999999999999999999999888754 55556665532 1 2 22456
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcC----CCCC---hhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 041882 253 TYALLMEGLCFKGEYNEAKKMMFDMAYRG----CKPQ---LVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYN 325 (491)
Q Consensus 253 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 325 (491)
.|...+..|....+.+.|.++..-+.... +.|+ ..-|..+..+.++....+.....|+.|+-.-.-|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 67888888889999988888766554321 2233 2345677788888888999999999998887888999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CH--------H----H-HHHHH-------HHHHh
Q 041882 326 ILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVE-DF--------E----G-SLKVL-------NAMLT 384 (491)
Q Consensus 326 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~--------~----~-a~~~~-------~~~~~ 384 (491)
.++++....++++-.-++|.++...|..-+...-..++..+++.. .. . + |..++ .++..
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~ 517 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA 517 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 999999999999999999999888764444444444444444322 11 0 0 11111 22222
Q ss_pred CCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhh
Q 041882 385 SRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKM----RFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSM 457 (491)
Q Consensus 385 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~ 457 (491)
. .......+..+..+.+.|..++|.+++.-+.+.+- .|......-++.+.........++..++-|...+.
T Consensus 518 ~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 518 Q--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred c--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 2 23456677888889999999999999999965542 33444455666766667777777777777755544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-14 Score=143.51 Aligned_cols=405 Identities=15% Similarity=0.067 Sum_probs=281.7
Q ss_pred chHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 041882 46 PFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAH 125 (491)
Q Consensus 46 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 125 (491)
.++..+...|+.++|+..+++..... +........+...+...|+++.|.++++.+.+.. +.++..+..++..+...+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcC
Confidence 45677778899999999999988321 2233334444668888999999999999999987 666888888899999999
Q ss_pred CHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 041882 126 LVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFD 205 (491)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 205 (491)
+.++|++.++++.... |+...+..++..+...++..+|++.++++.+.. +-+...+..++.++.+.|-...|+++..
T Consensus 151 q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 151 RGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred CHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 9999999999998864 555556555555555666767999999999874 2356677888888899998888887776
Q ss_pred HHHhCCCCCChhhH------HHHHHHH-----HhcCC---hhHHHHHHHHHHHc-CCCCCH-----HHHHHHHHHHHhcC
Q 041882 206 EMLEREVPPTVVTY------NSLIGFL-----CRTGE---MGKAKGLFEDMIKK-GTYPNA-----VTYALLMEGLCFKG 265 (491)
Q Consensus 206 ~~~~~~~~~~~~~~------~~ll~~~-----~~~~~---~~~a~~~~~~~~~~-~~~~~~-----~~~~~ll~~~~~~~ 265 (491)
+-... +.+....+ ..+++.- ....+ .+.|+.-++.+... +..|.. .+..-.+-++...+
T Consensus 228 ~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~ 306 (822)
T PRK14574 228 ENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRH 306 (822)
T ss_pred hCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhh
Confidence 54321 11111111 1111100 01112 34455555555542 222321 12223455677888
Q ss_pred CHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCCHHHH
Q 041882 266 EYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQY-----KPDVVTYNILINYLCKEDRAAEA 340 (491)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a 340 (491)
++.++++.|+.+...+.+....+-..+.++|...+++++|+.+|..+..... .++......|.-+|...+++++|
T Consensus 307 r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A 386 (822)
T PRK14574 307 QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKA 386 (822)
T ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHH
Confidence 8999999999988887665566778888899999999999999988866431 22344456788888888999999
Q ss_pred HHHHHHHHhCCC-----------CCC--HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCC
Q 041882 341 YKVLTEMQIGGC-----------KPN--AA-TYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGK 406 (491)
Q Consensus 341 ~~~~~~~~~~~~-----------~~~--~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 406 (491)
..+++++.+..- .|| -. .+..++..+...|+..+|++.++++.... +-|......+...+...|.
T Consensus 387 ~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 387 YQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDL 465 (822)
T ss_pred HHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 999988876310 122 22 33445667788899999999999887753 4578888888888889999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhh
Q 041882 407 VDDACFVLEEMEKRKMRFD-LKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISS 461 (491)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~ 461 (491)
+.+|.+.++..... .|+ ..+......++...+++.++-+.+....+.. |++
T Consensus 466 p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~--Pe~ 517 (822)
T PRK14574 466 PRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVISRS--PED 517 (822)
T ss_pred HHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC--CCc
Confidence 99999999776654 444 4555566666677777777777776665544 544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-15 Score=144.70 Aligned_cols=425 Identities=11% Similarity=0.023 Sum_probs=254.5
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCC--CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGS--KHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYG 122 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (491)
+-+.+.+-..|++..+..+.+.+..... ..-...|-.+.+++-..|+++.|...|....+..-......+.-+.+.+.
T Consensus 274 ~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 274 NHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH
Confidence 3456667777788888777777665431 12234567777777778888888877777666542222344556777777
Q ss_pred hcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCC----ChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChH
Q 041882 123 KAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDND----RVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWE 198 (491)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 198 (491)
+.|+++.+...|+++.... +.+..+...|...|+..+ ..+.|..++.+..+.- ..|...|..+...+...+-+.
T Consensus 354 ~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~ 431 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA 431 (1018)
T ss_pred HhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH
Confidence 7888888887777776654 225566666666666554 3455666665555442 335556665555554443333
Q ss_pred HHHHHHHHH----HhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCH------HHHHHHHHHHHhcC
Q 041882 199 EASRVFDEM----LEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK---GTYPNA------VTYALLMEGLCFKG 265 (491)
Q Consensus 199 ~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~ll~~~~~~~ 265 (491)
. +.+|..+ ...+..+.....|.+.......|++++|...|+..... ...++. .+--.+...+-..+
T Consensus 432 s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~ 510 (1018)
T KOG2002|consen 432 S-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELH 510 (1018)
T ss_pred H-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhh
Confidence 2 5554433 23444456666777777777777777777777666543 111222 22223344444455
Q ss_pred CHhHHHHHHHHHHHcC---------------------------------CCCChhcHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 266 EYNEAKKMMFDMAYRG---------------------------------CKPQLVNFGVLMSDLGKRGKIEEAKSLLSEM 312 (491)
Q Consensus 266 ~~~~a~~~~~~~~~~~---------------------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 312 (491)
++..|.++|..+.+.. ...++..++.+...+.+...+..|..-|..+
T Consensus 511 ~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i 590 (1018)
T KOG2002|consen 511 DTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETI 590 (1018)
T ss_pred hhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHH
Confidence 5555555555554431 0223333344444555555555555544444
Q ss_pred HHc-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041882 313 KKR-QYKPDVVTYNILINYLCK------------EDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVL 379 (491)
Q Consensus 313 ~~~-~~~~~~~~~~~li~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 379 (491)
.+. ...+|+.+.-.|...|.+ .+..++|+++|.+.++.. +-|...-+.+...++..|++..|..+|
T Consensus 591 ~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIF 669 (1018)
T KOG2002|consen 591 LKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIF 669 (1018)
T ss_pred HhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHH
Confidence 332 112355555555554432 234667777777777653 556666667777777888888888888
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhh
Q 041882 380 NAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKR-KMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMA 458 (491)
Q Consensus 380 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~ 458 (491)
.+..+... ....+|..+.++|..+|++..|++.|+...+. .-.-+......|-.+++..|++.++.+.+...+...
T Consensus 670 sqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~-- 746 (1018)
T KOG2002|consen 670 SQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA-- 746 (1018)
T ss_pred HHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--
Confidence 88877632 34566777888888888888888888876643 334466777778888888888766666665544433
Q ss_pred hhhhHHHHHHHHHhcCCC
Q 041882 459 ISSVMNVVDLLWTYLGMG 476 (491)
Q Consensus 459 ~~~~~~~~~l~~~~~~~g 476 (491)
|+++.-.++++.+..+.+
T Consensus 747 p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 747 PSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred CccchHHhHHHHHHHHHH
Confidence 777777777777766554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.6e-15 Score=140.93 Aligned_cols=430 Identities=12% Similarity=0.063 Sum_probs=307.8
Q ss_pred hhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHH
Q 041882 52 KEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIR--CKETLFISLIQHYGKAHLVDK 129 (491)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~ 129 (491)
........++..+...-..+ ..++...+.|...+.-.|+++.+..+...+...... .-...|..+.++|-..|++++
T Consensus 247 ~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ek 325 (1018)
T KOG2002|consen 247 NDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEK 325 (1018)
T ss_pred cchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHH
Confidence 33456778888888777544 567788999999999999999999999998876521 223558889999999999999
Q ss_pred HHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC----ChHHHHHHHH
Q 041882 130 AIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKG----EWEEASRVFD 205 (491)
Q Consensus 130 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~ 205 (491)
|..+|.+.......-.+..+--+.+.+...|+.+.+...|+.+.+.. +-+..+..+|...|...+ ..+.|..++.
T Consensus 326 A~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 326 AFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred HHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 99999988776533224566778999999999999999999998863 234556666666666664 4577777777
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-
Q 041882 206 EMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMI----KKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR- 280 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~- 280 (491)
...+.- +.|...|-.+...+-... +..++.+|.... ..+..+.+...|.+...+...|++..|...|+.....
T Consensus 405 K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 405 KVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred HHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 777754 448888988888776554 444477776654 4455678899999999999999999999999987765
Q ss_pred --CCCCCh------hcHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---------------------------------C
Q 041882 281 --GCKPQL------VNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYK---------------------------------P 319 (491)
Q Consensus 281 --~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------------~ 319 (491)
...++. .+--.+....-..++.+.|.+.|..+.+..+. .
T Consensus 483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~ 562 (1018)
T KOG2002|consen 483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS 562 (1018)
T ss_pred hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence 122222 12223444445556677777777776654221 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCC
Q 041882 320 DVVTYNILINYLCKEDRAAEAYKVLTEMQIG-GCKPNAATYRMMVDGFLR------------VEDFEGSLKVLNAMLTSR 386 (491)
Q Consensus 320 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~------------~~~~~~a~~~~~~~~~~~ 386 (491)
++..+..+...+.+...+..|.+-|...... ...+|..+...|.+.|.. .+..++|+++|.+.++..
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d 642 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND 642 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC
Confidence 2223333333333333333333333333221 112444444455554442 344678888888888864
Q ss_pred CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHH
Q 041882 387 HCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVV 466 (491)
Q Consensus 387 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~ 466 (491)
+.|...-+-+.-.++..|++.+|..+|.+..+... -+..+|-.+..+|..+|.+..|++.++...+.-.+-+++..+.
T Consensus 643 -pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 643 -PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH 720 (1018)
T ss_pred -cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 34777778888889999999999999999998743 3557788899999999999999999988887777778899999
Q ss_pred HHHHHhcCCCcchhhhhHhhh
Q 041882 467 DLLWTYLGMGTCVVIDLFQKR 487 (491)
Q Consensus 467 ~l~~~~~~~g~~~~~~~~~k~ 487 (491)
-|+.+|++.|+++++.....+
T Consensus 721 ~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred HHHHHHHHhhhHHHHHHHHHH
Confidence 999999999999988776544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-14 Score=124.97 Aligned_cols=344 Identities=14% Similarity=0.153 Sum_probs=261.2
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHH
Q 041882 73 KHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSL 152 (491)
Q Consensus 73 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 152 (491)
+.+..++..+|..+++-...+.|.+++++........+..+||.+|.+-.-..+ .+++.+|......||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence 446679999999999999999999999999888888999999999887554333 6788899888899999999999
Q ss_pred HHHHHhCCChh----hHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHH-HHHHHHHHHhC----CC----CCChhhH
Q 041882 153 LDILVDNDRVD----DAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEE-ASRVFDEMLER----EV----PPTVVTY 219 (491)
Q Consensus 153 l~~~~~~~~~~----~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~----~~----~~~~~~~ 219 (491)
+++..+.|+++ .|.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++... .+ +-|...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 99999999876 456778889999999999999999999999888754 44555554432 12 2245567
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHH
Q 041882 220 NSLIGFLCRTGEMGKAKGLFEDMIKKG----TYPN---AVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVL 292 (491)
Q Consensus 220 ~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (491)
...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....|+....+....+|+.|+-+-+-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 788889999999999988877665321 2222 234666777888999999999999999998888999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-C---H-----H-----HHHHH-------HHHHHhCC
Q 041882 293 MSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKED-R---A-----A-----EAYKV-------LTEMQIGG 351 (491)
Q Consensus 293 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~---~-----~-----~a~~~-------~~~~~~~~ 351 (491)
+++..-.+.++-..++|..+...|...+...-..++..+++.. + . . -|..+ -.+|..
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~-- 517 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA-- 517 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--
Confidence 9999999999999999999988775545555444555454433 1 1 0 01111 122332
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041882 352 CKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHC----PRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKM 422 (491)
Q Consensus 352 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 422 (491)
........+...-.+.+.|..++|.+++..+.+.+-. |......-+++.-.+.+....|..+++-|...+.
T Consensus 518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 3455666777788889999999999999999766322 3333444666777788999999999999976643
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.1e-15 Score=130.06 Aligned_cols=416 Identities=11% Similarity=0.060 Sum_probs=274.7
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHhH-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHH
Q 041882 54 IRDPDEALSLFHRHHQMGSKHSYPSY-ASLIYKLARARDFDAVETVLGYIQDFNIRCK----ETLFISLIQHYGKAHLVD 128 (491)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 128 (491)
.....+|+..|+-+.+...-|+.-.+ ..+...+.+.+++..|.+.|+.....-...+ ..+.+.+...+.+.|.++
T Consensus 214 ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~ 293 (840)
T KOG2003|consen 214 NDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYD 293 (840)
T ss_pred hHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccch
Confidence 45556777777766665555554433 2334566777888889888887765432222 345666666788899999
Q ss_pred HHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhH--------HHHHHHHHhcC-----
Q 041882 129 KAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISF--------NVMIKGRLKKG----- 195 (491)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~--------~~ll~~~~~~~----- 195 (491)
.|+..|+...+. .|+..+-..|+-++..-|+.++..+.|.+|+.....||..-| ..|+.-..+..
T Consensus 294 dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ 371 (840)
T KOG2003|consen 294 DAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNM 371 (840)
T ss_pred hhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHH
Confidence 999999988775 377766666666777788888888899888765333332211 11221111111
Q ss_pred ---ChHHHHHHHHH---HHhCCCCCChh---------------------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041882 196 ---EWEEASRVFDE---MLEREVPPTVV---------------------TYNSLIGFLCRTGEMGKAKGLFEDMIKKGTY 248 (491)
Q Consensus 196 ---~~~~a~~~~~~---~~~~~~~~~~~---------------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 248 (491)
+-..|++.+-. +..--+.|+-. .-..-..-+.+.|+++.|+++++-+.+..-.
T Consensus 372 ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk 451 (840)
T KOG2003|consen 372 EKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNK 451 (840)
T ss_pred HHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccch
Confidence 11112221111 11111111100 0011223566777777777777766544221
Q ss_pred CCHHH-------------------------------HHH-----HHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHH
Q 041882 249 PNAVT-------------------------------YAL-----LMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVL 292 (491)
Q Consensus 249 ~~~~~-------------------------------~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (491)
.-... |+. --.....+|++++|.+.|++.+.....-....|++
T Consensus 452 ~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni- 530 (840)
T KOG2003|consen 452 TASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI- 530 (840)
T ss_pred hhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-
Confidence 11100 111 01112345788999999998886643333333333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 041882 293 MSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDF 372 (491)
Q Consensus 293 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 372 (491)
.-.+...|++++|+..|-++... ...+..+...+...|-...+..+|++++.+.... ++.|+..++.+...|-+.|+-
T Consensus 531 glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdk 608 (840)
T KOG2003|consen 531 GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDK 608 (840)
T ss_pred cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccch
Confidence 33466789999999998877553 2237778888889999999999999999887653 567788899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCCcchhHHHHH
Q 041882 373 EGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACI-GDGNAGGLVEIRD 451 (491)
Q Consensus 373 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~~~ 451 (491)
.+|.+.+-.-... ++.+..+..-|...|....-+++++.+|++..- ++|+..-|..++..|.+ .|++..+++.++.
T Consensus 609 sqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 609 SQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred hhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 9999887665553 566888888888889999999999999998873 79999999999876554 5678889998887
Q ss_pred HhhhhhhhhhhHHHHHHHHHhcCCCcch
Q 041882 452 MRDYSMAISSVMNVVDLLWTYLGMGTCV 479 (491)
Q Consensus 452 m~~~~~~~~~~~~~~~l~~~~~~~g~~~ 479 (491)
..+.- |.+..++--|..+...+|.-+
T Consensus 686 ~hrkf--pedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 686 IHRKF--PEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHhC--ccchHHHHHHHHHhccccchh
Confidence 66553 899999999999888888443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-12 Score=124.23 Aligned_cols=367 Identities=14% Similarity=0.097 Sum_probs=282.0
Q ss_pred hHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041882 47 FVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHL 126 (491)
Q Consensus 47 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 126 (491)
.++.+...|+.++|.+++.+.+... +.....|..|...|-+.|+.+.+...+-.+--.+ +.|...|..+.....+.|.
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence 4455556799999999999999865 6677799999999999999999998776665555 6778999999999999999
Q ss_pred HHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHh----HHHHHHHHHhcCChHHHHH
Q 041882 127 VDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLIS----FNVMIKGRLKKGEWEEASR 202 (491)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~ 202 (491)
+++|.-.|.+..+..+ ++...+---...|-+.|+...|..-|.++.....+.|..- .-.+++.+...++-+.|.+
T Consensus 223 i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999998763 3666666678889999999999999999988743222222 2334566777788899999
Q ss_pred HHHHHHhC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---------------------------CHHHH
Q 041882 203 VFDEMLER-EVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYP---------------------------NAVTY 254 (491)
Q Consensus 203 ~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~~~~~ 254 (491)
.++..... +-..+...++.++..|.+...++.|......+......+ +..++
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 99887763 233466788999999999999999999888877622222 22221
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcC--CCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 041882 255 ALLMEGLCFKGEYNEAKKMMFDMAYRG--CKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLC 332 (491)
Q Consensus 255 ~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 332 (491)
-+.-++...+..+....+...+.... ..-+...|.-+..++...|++.+|..+|..+......-+...|-.+..+|.
T Consensus 382 -rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 -RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred -hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 22334455555555555666666665 334566788899999999999999999999998765557889999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCCHHhHHHHHHHHHcC
Q 041882 333 KEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT--------SRHCPRLETFSCLLVGLLKG 404 (491)
Q Consensus 333 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~ 404 (491)
..|.++.|.+.|...+... +.+...-..|...+.+.|+.++|.+.++.+.. .+..|+..........+...
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 9999999999999998753 44455666777788899999999999998653 23445666666677788889
Q ss_pred CCHHHHHHHHHHHH
Q 041882 405 GKVDDACFVLEEME 418 (491)
Q Consensus 405 g~~~~a~~~~~~~~ 418 (491)
|+.++-..+...|.
T Consensus 540 gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 540 GKREEFINTASTLV 553 (895)
T ss_pred hhHHHHHHHHHHHH
Confidence 99888666655554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-12 Score=114.66 Aligned_cols=362 Identities=10% Similarity=0.010 Sum_probs=263.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHH--
Q 041882 108 RCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFN-- 185 (491)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-- 185 (491)
..|...+-.....+.+.|....|+..|......- +..=.+|..|.... .+.+. ...+.. +...|.....
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~----~~~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEI----LSILVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHH----HHHHHh-cCcccchHHHHH
Confidence 3455555555556667777888888877776532 12333343333332 22222 222221 1121211111
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHh
Q 041882 186 VMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGT--YPNAVTYALLMEGLCF 263 (491)
Q Consensus 186 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~ 263 (491)
.+..++-...+.+++..-.......|++.+...-+....+.....+++.|+.+|+++.+... .-|..+|+.++-.-..
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 23345556668888888888888888886766666667777888999999999999998732 1267788887743322
Q ss_pred cCCHh-HHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041882 264 KGEYN-EAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYK 342 (491)
Q Consensus 264 ~~~~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 342 (491)
..... .|..++. + -+--+.|..++...|+-.++.++|...|++..+.++. ....|+.+..-|....+...|.+
T Consensus 312 ~skLs~LA~~v~~-i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 312 KSKLSYLAQNVSN-I----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hHHHHHHHHHHHH-h----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 22211 1222211 1 1344567888899999999999999999999998776 77889999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041882 343 VLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKM 422 (491)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 422 (491)
-++...+-+ +.|...|-.+.++|.-.+.+.-|+-+|+++.+.. +.|...|.+|..+|.+.++.++|++.|++....|-
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 999999865 6788899999999999999999999999999863 34889999999999999999999999999997653
Q ss_pred CCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhh-----hhhhhhHHHHHHHHHhcCCCcchhhhhHhhh
Q 041882 423 RFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYS-----MAISSVMNVVDLLWTYLGMGTCVVIDLFQKR 487 (491)
Q Consensus 423 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~ 487 (491)
.+...+..|...+-+.++..++...+++-.+.- ++|.......-|+..+.+.++++++..|.-+
T Consensus 464 -te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 464 -TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred -cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 366788889998888899999998887766533 4466777777799999999999999988544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.1e-13 Score=126.84 Aligned_cols=366 Identities=15% Similarity=0.127 Sum_probs=279.4
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhh
Q 041882 85 KLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDD 164 (491)
Q Consensus 85 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 164 (491)
.+...|++++|.+++.++++.. +.....|..|...|-..|+.+++...+-.....+. .|...|..+.....+.|.++.
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHH
Confidence 3445599999999999999987 77889999999999999999999998887776653 377999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCChhHHHHHHH
Q 041882 165 AKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVV----TYNSLIGFLCRTGEMGKAKGLFE 240 (491)
Q Consensus 165 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~ 240 (491)
|.-.|.+.++.. +++...+---+..|-+.|+...|...|.++.....+.|.. .--.+++.+...++-+.|.+.++
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999875 3355555556778999999999999999999875432322 22344666777888899999988
Q ss_pred HHHHc-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC---------------------------ChhcHHHH
Q 041882 241 DMIKK-GTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKP---------------------------QLVNFGVL 292 (491)
Q Consensus 241 ~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~~~~~~~l 292 (491)
..... +-..+...++.++..|.+...++.+.............+ +...+ -+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl 383 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RL 383 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hH
Confidence 87763 223355678888999999999999988887776622222 22221 12
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 041882 293 MSDLGKRGKIEEAKSLLSEMKKRQ--YKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVE 370 (491)
Q Consensus 293 l~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 370 (491)
+-++.+....+....+.....+.+ +.-+...|.-+..+|...|++.+|+.+|..+......-+...|..+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 223344455555555555556655 334567899999999999999999999999988755566778999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCC
Q 041882 371 DFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEME--------KRKMRFDLKAWEGLVTDACIGDGN 442 (491)
Q Consensus 371 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~ 442 (491)
.+++|.+.|+..+... +.+...-..|...+-..|+.++|.+.++.+. ..+..|+....-.....+...|+.
T Consensus 464 e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 9999999999999863 2356666778888999999999999999954 233556666666666667777777
Q ss_pred cchhHHHHHHhhh
Q 041882 443 AGGLVEIRDMRDY 455 (491)
Q Consensus 443 ~~~~~~~~~m~~~ 455 (491)
++-+.....|...
T Consensus 543 E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 543 EEFINTASTLVDD 555 (895)
T ss_pred HHHHHHHHHHHHH
Confidence 7766666665554
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-11 Score=112.15 Aligned_cols=433 Identities=9% Similarity=0.008 Sum_probs=270.4
Q ss_pred chHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH----HHhcCCCCCHHHHHHHHHHH
Q 041882 46 PFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGY----IQDFNIRCKETLFISLIQHY 121 (491)
Q Consensus 46 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~ 121 (491)
.+..+|.+..-++.|..+++.+.+. ++.++..|......=-.+|+.+...+++++ +...|+..+...|..=...|
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 3455555666666666666666653 556666666655555566666666666553 23455556666666666666
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCc--CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHH
Q 041882 122 GKAHLVDKAIEVFNRMTSFDCVR--TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEE 199 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 199 (491)
-..|..-.+..+.......|+.- -..+|+.-...|.+.+.++-|..+|...++. ++-+...|......--..|..+.
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHH
Confidence 66666666666666665555432 2345666666666666666666666666553 22344555555555555567777
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 041882 200 ASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAY 279 (491)
Q Consensus 200 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (491)
...+|+++... ++.....|-.....+-..|+...|..++....+.... +...|-.-++.-..+.+++.|..+|.+...
T Consensus 569 l~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 569 LEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 77777777665 3335666666677777778888888888887776433 667777777777788888888888877665
Q ss_pred cCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 041882 280 RGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATY 359 (491)
Q Consensus 280 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 359 (491)
. .|+...|.--+...--.+..++|.+++++..+.- +.-...|..+.+.+-+.++.+.|.+.|..-... ++-....|
T Consensus 647 ~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLW 722 (913)
T KOG0495|consen 647 I--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLW 722 (913)
T ss_pred c--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHH
Confidence 4 5666666665555566777888888887777652 223456777777777788888887777665442 23334455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC----C--------------
Q 041882 360 RMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKR----K-------------- 421 (491)
Q Consensus 360 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-------------- 421 (491)
..+...=-+.|.+-.|..++++..-.+ +.+...|...|+.-.+.|+.+.|..+..+..+. |
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcc
Confidence 555555566777788888888777664 346677777888888888888777766665543 1
Q ss_pred -----------CCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhhHhhhhc
Q 041882 422 -----------MRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDLFQKREM 489 (491)
Q Consensus 422 -----------~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~~~ 489 (491)
.+-|++..-++...+....+.+.+.+-|.+... +.|+....+.-+...+...|.-++..+..++..
T Consensus 802 rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 802 RKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred cchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 111333333333333333334444444443332 337777777777777777786666666666544
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.1e-13 Score=125.79 Aligned_cols=283 Identities=13% Similarity=0.064 Sum_probs=200.3
Q ss_pred cCCHHHHHHHHHHhhhCCCCcCHHH-HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHH--HHHHHHHhcCChHHH
Q 041882 124 AHLVDKAIEVFNRMTSFDCVRTLQS-FNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFN--VMIKGRLKKGEWEEA 200 (491)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a 200 (491)
.|+++.|++.+....... +++.. |.....+....|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 588998888887765542 22333 333344447788899999999888765 45543332 335678888999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHhHHHHH
Q 041882 201 SRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNA-------VTYALLMEGLCFKGEYNEAKKM 273 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~ 273 (491)
...++.+.+.... +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999988887543 6778888888899999999999999998887655322 1223333333344455566666
Q ss_pred HHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041882 274 MFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCK 353 (491)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 353 (491)
++.+.+. .+.+......+...+...|+.++|..++++..+. .++.... ++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 6655433 2456677778888888889999999888888774 3344322 2333345588888888888887653 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 354 PNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 354 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
-|...+..+...|.+.+++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55566777888888889999999999888884 48888888888888889999999888887653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.6e-16 Score=138.29 Aligned_cols=260 Identities=16% Similarity=0.163 Sum_probs=78.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhC
Q 041882 81 SLIYKLARARDFDAVETVLGYIQDFN-IRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDN 159 (491)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 159 (491)
.+...+.+.|+++.|.++++...... .+.+...|..+...+...++++.|++.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 33555556666666666664433222 2334444555555555566666666666666554422 44455555555 466
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChhHHHHH
Q 041882 160 DRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLERE-VPPTVVTYNSLIGFLCRTGEMGKAKGL 238 (491)
Q Consensus 160 ~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~ 238 (491)
+++++|.+++....+. .++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|++++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666554433 2344455556666666666666666666655432 234555566666666666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 041882 239 FEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYK 318 (491)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 318 (491)
+++..+.... |......++..+...|+.+++..++....+.. +.|...+..+..++...|+.++|...|++..+.++.
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 6666665222 45555666666666666666666666655543 344445555666666666666666666666654333
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041882 319 PDVVTYNILINYLCKEDRAAEAYKVLTEM 347 (491)
Q Consensus 319 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 347 (491)
|+.....+..++...|+.++|.++.++.
T Consensus 247 -d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 -DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp --HHHHHHHHHHHT---------------
T ss_pred -cccccccccccccccccccccccccccc
Confidence 5666666666666666666666665554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-12 Score=123.10 Aligned_cols=285 Identities=14% Similarity=0.126 Sum_probs=219.4
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHH--HHHHHHHhCCChhh
Q 041882 88 RARDFDAVETVLGYIQDFNIRCKETLF-ISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFN--SLLDILVDNDRVDD 164 (491)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~ 164 (491)
-.||++.|.+.+....+.. +++..+ ........+.|+++.|.+.+.++.+.. |+..... .....+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHH
Confidence 3699999998888766643 223333 333455588999999999999998753 4443332 34678888999999
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCChhHHHH
Q 041882 165 AKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTV-------VTYNSLIGFLCRTGEMGKAKG 237 (491)
Q Consensus 165 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~ 237 (491)
|...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999998875 335677888999999999999999999999987654222 123333444444555666667
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 041882 238 LFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQY 317 (491)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 317 (491)
+++.+.+. .+.++.....+...+...|+.++|...+.+..+. +++... .++.+....++.+++....+...+..+
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC
Confidence 77766543 3447788888999999999999999999998874 555522 233344456999999999999998766
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 318 KPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 318 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 385 (491)
. |...+..+...+.+.+++++|.+.|+...+. .|+..++..+...+.+.|+.++|.+++++....
T Consensus 326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5 7888999999999999999999999999874 799999999999999999999999999988653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=7e-13 Score=124.97 Aligned_cols=291 Identities=10% Similarity=0.053 Sum_probs=196.7
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcC-HHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCChH
Q 041882 122 GKAHLVDKAIEVFNRMTSFDCVRT-LQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLI--SFNVMIKGRLKKGEWE 198 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~ 198 (491)
...|+++.|.+.+.+..+.. |+ ...+-....++...|+++.|.+++.+..+.. |+.. .-......+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 45788888888888876653 33 3344455667777888888888888876643 4432 3333577778888888
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HhcCCHhHHHHHH
Q 041882 199 EASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYA-LLMEGL---CFKGEYNEAKKMM 274 (491)
Q Consensus 199 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~~~~~~a~~~~ 274 (491)
.|...++.+.+.... +...+..+...+.+.|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+...+.+
T Consensus 171 ~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 171 AARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 888888888887533 6677888888888888888888888888887654 332221 111111 2223333333344
Q ss_pred HHHHHcC---CCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 275 FDMAYRG---CKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTY-NILINYLCKEDRAAEAYKVLTEMQIG 350 (491)
Q Consensus 275 ~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~ 350 (491)
..+.+.. .+.+...+..+...+...|+.++|.+++++..+..+......+ ..........++.+.+.+.++...+.
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 4444432 1236777788888888899999999999888886443221111 11112223457778888888877764
Q ss_pred CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 351 GCKPNA--ATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 351 ~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
. +-|+ ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 329 ~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 V-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred C-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 3344 456678888889999999999999533333458888888899999999999999999988653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-12 Score=123.30 Aligned_cols=290 Identities=12% Similarity=0.042 Sum_probs=196.2
Q ss_pred hCCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 041882 158 DNDRVDDAKRMFDDADKMGFRPNL-ISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAK 236 (491)
Q Consensus 158 ~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 236 (491)
..|+++.|.+.+.+..+. .|+. ..+-....+....|+++.|.+.+.+..+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 468899999998887665 3443 3344456677788999999999988876532222223344577788889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHH---HhcCChHHHHHHHHHHH
Q 041882 237 GLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDL---GKRGKIEEAKSLLSEMK 313 (491)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~ 313 (491)
..++.+.+.... +..++..+...+...|+++.|.+.+..+.+.+..+.......-..++ ...+..+.+...+..+.
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999998887543 66778888888999999999999999988886433322211111221 22222233333444444
Q ss_pred HcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHH--HHHhcCCHHHHHHHHHHHHhCCC
Q 041882 314 KRQY---KPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATY-RMMVD--GFLRVEDFEGSLKVLNAMLTSRH 387 (491)
Q Consensus 314 ~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~--~~~~~~~~~~a~~~~~~~~~~~~ 387 (491)
+..+ +.+...+..++..+...|+.++|.+.+++..+.. |+.... ..++. .....++.+.+.+.++...+..
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~- 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV- 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence 3322 1377888888888899999999999999888753 333311 01222 2234577888888888887752
Q ss_pred CCCH--HhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHh
Q 041882 388 CPRL--ETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMR 453 (491)
Q Consensus 388 ~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~ 453 (491)
+-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.+++.+.+++-.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2234 56678888889999999999999964444457888888888888888888888877776543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-12 Score=110.80 Aligned_cols=291 Identities=17% Similarity=0.167 Sum_probs=202.1
Q ss_pred hhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHH
Q 041882 52 KEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCK---ETLFISLIQHYGKAHLVD 128 (491)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 128 (491)
.-.+++++|++.|-.|.+.. +.+.++--.|...+.+.|..+.|++++..+.+..--+. ......|..-|...|-++
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred HhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 44578889999998888743 44555667777888888999999999988876431111 234556777788889999
Q ss_pred HHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCChHHHHHHH
Q 041882 129 KAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNL----ISFNVMIKGRLKKGEWEEASRVF 204 (491)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~ 204 (491)
.|+++|..+.+.+ .--..+...|+..|-...+|++|++.-+++.+.+..+.. ..|.-+...+....+++.|..++
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999998887754 224567888888888888999999888888876544332 23455555666677888888888
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 041882 205 DEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKP 284 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 284 (491)
.+..+.+.+ ++..-..+.+.....|+++.|++.++...+.+..--..+...+..+|.+.|+.++....+..+.+.. +
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~ 280 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--T 280 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--C
Confidence 888776543 5555566777888888888888888888887655556677778888888888888888888887763 3
Q ss_pred ChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh
Q 041882 285 QLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCK---EDRAAEAYKVLTEMQI 349 (491)
Q Consensus 285 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~ 349 (491)
....-..+........-.+.|..++.+-... +|+...+..++..-.. .|...+.+.++++|..
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3333444444444444555665555444433 4777777777775542 3445556666666654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.4e-16 Score=137.62 Aligned_cols=263 Identities=14% Similarity=0.131 Sum_probs=115.3
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMG-SKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGK 123 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (491)
..+...+...|++++|++++....... .+.+...|..+.......++++.|.+.++.+...+ +.++..+..++.. ..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cc
Confidence 456777889999999999997655443 24455556666677778999999999999999876 4467778888887 78
Q ss_pred cCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCChHHHHH
Q 041882 124 AHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMG-FRPNLISFNVMIKGRLKKGEWEEASR 202 (491)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~ 202 (491)
.+++++|.+++++..+.. ++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|++
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999998876543 567778889999999999999999999987542 34577888889999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 041882 203 VFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGC 282 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 282 (491)
.+++..+.... |....+.++..+...|+.+++.++++...+.. +.|+..+..+..++...|+.++|..+++...+..
T Consensus 168 ~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 168 DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 99999987433 68889999999999999999999999887763 3456678889999999999999999999998874
Q ss_pred CCChhcHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041882 283 KPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKK 314 (491)
Q Consensus 283 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 314 (491)
+.|......+..++...|+.++|..+..++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 56888888999999999999999999887654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-12 Score=115.42 Aligned_cols=382 Identities=11% Similarity=0.077 Sum_probs=254.8
Q ss_pred HhhhcCChHHHHHHHHHhhhCCCCCCHH----hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 041882 50 DLKEIRDPDEALSLFHRHHQMGSKHSYP----SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAH 125 (491)
Q Consensus 50 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 125 (491)
...+..++..|+++|+-.+..-...+.. ..+.+...+.+.|.++.|...|+.+.+. .|+-.+-..|+-++...|
T Consensus 246 i~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~ 323 (840)
T KOG2003|consen 246 IHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIG 323 (840)
T ss_pred eeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecC
Confidence 3455678889999988776543333322 3455556677889999999999988876 356555445555555678
Q ss_pred CHHHHHHHHHHhhhCCCCc------------CHHHHHHHH-----HHHHhCC--ChhhHHHHHHHHHHCCCCCCHHh---
Q 041882 126 LVDKAIEVFNRMTSFDCVR------------TLQSFNSLL-----DILVDND--RVDDAKRMFDDADKMGFRPNLIS--- 183 (491)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~------------~~~~~~~ll-----~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~--- 183 (491)
+-++..+.|.+|...-..+ +....+..| .-.-+.+ +.++++-.-.+++.--+.||-..
T Consensus 324 d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~d 403 (840)
T KOG2003|consen 324 DAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCD 403 (840)
T ss_pred cHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccH
Confidence 8888888888886642222 222222211 1111111 11122211122222222232110
Q ss_pred H------------------HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHH----------------------
Q 041882 184 F------------------NVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLI---------------------- 223 (491)
Q Consensus 184 ~------------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll---------------------- 223 (491)
| ..-...+.+.|+++.|.++++-+...+-+.-...-+.|-
T Consensus 404 wcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~al 483 (840)
T KOG2003|consen 404 WCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIAL 483 (840)
T ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh
Confidence 0 011235778888888888887776553221111111111
Q ss_pred --------------HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcH
Q 041882 224 --------------GFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNF 289 (491)
Q Consensus 224 --------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 289 (491)
..-...|++++|.+.|++.+.....-....|+ +--.+-..|+.++|++.|-.+... +..+..+.
T Consensus 484 n~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl 561 (840)
T KOG2003|consen 484 NIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVL 561 (840)
T ss_pred cccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHH
Confidence 11124588999999999998763332222333 334567889999999999877543 23456677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 041882 290 GVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRV 369 (491)
Q Consensus 290 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 369 (491)
..+...|....+...|++++.+.... ++.|+.+.+-|...|-+.|+-.+|.+.+-+--+- .+-|..+...+...|...
T Consensus 562 ~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 562 VQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhh
Confidence 77888899999999999999888765 4558999999999999999999999887654432 467788888888889999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH-HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041882 370 EDFEGSLKVLNAMLTSRHCPRLETFSCLLVGL-LKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGD 440 (491)
Q Consensus 370 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 440 (491)
.-+++++.+|++..- +.|+..-|..++-.| .+.|++.+|..+++....+ +.-|......|+..+...|
T Consensus 640 qf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 640 QFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 999999999999876 679999999888655 5689999999999999875 6667788888887654444
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-10 Score=103.76 Aligned_cols=377 Identities=11% Similarity=0.122 Sum_probs=236.1
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA 124 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (491)
+.+.+-=..+++...|..+|++++.-. ..+...|-.-+..=.+.+....|..+++.....- |.-...|--.+.+=-..
T Consensus 77 ikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 77 IKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHh
Confidence 334444445678888999999888754 4445556666666666677777777777766542 22223344444444455
Q ss_pred CCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 041882 125 HLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVF 204 (491)
Q Consensus 125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 204 (491)
|++..|.++|++..+. .|+..+|++.|..=.+.+.++.|..+|+...-. .|+..+|....+.=.+.|++..+.++|
T Consensus 155 gNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred cccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 6677777777666654 466667777776666666666666666665543 356666555544444444444444444
Q ss_pred HHHHhC--------------------------------------------------------------------------
Q 041882 205 DEMLER-------------------------------------------------------------------------- 210 (491)
Q Consensus 205 ~~~~~~-------------------------------------------------------------------------- 210 (491)
+...+.
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 433321
Q ss_pred ------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HhcCCHhHHHHHH
Q 041882 211 ------EVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNA-------VTYALLMEGL---CFKGEYNEAKKMM 274 (491)
Q Consensus 211 ------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~---~~~~~~~~a~~~~ 274 (491)
.-+.|-.+|-..++.-...|+.+...++|++.+.. ++|-. ..|..+--++ ....+.+.+.+++
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 01223444555555555566666667777766654 33311 1121111111 2456666777777
Q ss_pred HHHHHcCCCCChhcHHHHHHHH----HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 275 FDMAYRGCKPQLVNFGVLMSDL----GKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIG 350 (491)
Q Consensus 275 ~~~~~~~~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 350 (491)
+..++. ++....||.-+--.| .++.++..|.+++..... ..|-..+|...|..-.+.++++.+..++++.++-
T Consensus 390 q~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 390 QACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 776663 345555655443333 356777888888777653 4567778888888888888999999999998886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 041882 351 GCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSR-HCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAW 429 (491)
Q Consensus 351 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 429 (491)
+ +-|..+|......-...|+.+.|..+|+-++... .......|...|+.-...|.+++|..+++++.+.. +...+|
T Consensus 467 ~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvW 543 (677)
T KOG1915|consen 467 S-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVW 543 (677)
T ss_pred C-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHH
Confidence 5 5566777777777777899999999999888762 22345667777887788999999999999998763 344466
Q ss_pred HHHHH
Q 041882 430 EGLVT 434 (491)
Q Consensus 430 ~~ll~ 434 (491)
.....
T Consensus 544 isFA~ 548 (677)
T KOG1915|consen 544 ISFAK 548 (677)
T ss_pred HhHHH
Confidence 55544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.8e-12 Score=107.48 Aligned_cols=287 Identities=17% Similarity=0.198 Sum_probs=197.6
Q ss_pred cCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH------HhHHHHHHHHHhcCCh
Q 041882 124 AHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNL------ISFNVMIKGRLKKGEW 197 (491)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~ll~~~~~~~~~ 197 (491)
.++.++|.+.|-+|.+.+.. +.++.-+|.+.|-+.|..+.|+++...+.++ ||. .....|.+-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 46778888888888775422 5566677888888888888888888887764 332 2233455667788888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHhHHHHH
Q 041882 198 EEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNA----VTYALLMEGLCFKGEYNEAKKM 273 (491)
Q Consensus 198 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~ 273 (491)
|.|+.+|..+.+.+.. -......|+..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 8888888888775432 4556677888888888888888888888776554432 3455566666667788888888
Q ss_pred HHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041882 274 MFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCK 353 (491)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 353 (491)
+.+..+.+ +..+..--.+.+.....|+++.|.+.++.+.+.++.--+.+...|..+|.+.|+.++....+.++.+..
T Consensus 203 l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-- 279 (389)
T COG2956 203 LKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-- 279 (389)
T ss_pred HHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 88877664 333344445667777888888888888888887666566677788888888888888888888877653
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc---CCCHHHHHHHHHHHHHC
Q 041882 354 PNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLK---GGKVDDACFVLEEMEKR 420 (491)
Q Consensus 354 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 420 (491)
++...-..+.+......-.+.|..++.+-+.. .|+...+..++..-.. .|...+-...++.|...
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 33333444444444444555666555555443 4788888888876553 35566667777777644
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.7e-10 Score=103.72 Aligned_cols=425 Identities=13% Similarity=0.101 Sum_probs=329.6
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA 124 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (491)
..+-+......+++.|.-++.+..+. ++.+.+ |..++++...|+.|..+++...+. ++.+..+|......=-..
T Consensus 380 v~LWKaAVelE~~~darilL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~n 453 (913)
T KOG0495|consen 380 VRLWKAAVELEEPEDARILLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEAN 453 (913)
T ss_pred HHHHHHHHhccChHHHHHHHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhc
Confidence 34555556667777788888887774 233333 344566777889999999988875 477888888777777788
Q ss_pred CCHHHHHHHHHHh----hhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCChH
Q 041882 125 HLVDKAIEVFNRM----TSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPN--LISFNVMIKGRLKKGEWE 198 (491)
Q Consensus 125 ~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~ 198 (491)
|+.+...+++++- ...|+..+...|-.=...|-..|..-.+..+....+..|+.-. ..||+.-...|.+.+.++
T Consensus 454 gn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~ 533 (913)
T KOG0495|consen 454 GNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIE 533 (913)
T ss_pred CCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHH
Confidence 8888888877653 4567888888898888888888998888888888887776432 457888888999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 041882 199 EASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMA 278 (491)
Q Consensus 199 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (491)
-|..+|....+- .+-+...|......--..|..+....++++.... ++-....|....+-+-..|+...|..++....
T Consensus 534 carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af 611 (913)
T KOG0495|consen 534 CARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAF 611 (913)
T ss_pred HHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 999999998875 3336677877777777788899999999999886 33356677777788888999999999999998
Q ss_pred HcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-H
Q 041882 279 YRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA-A 357 (491)
Q Consensus 279 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~ 357 (491)
+.. +.+...+-+-+........++.|..+|.+.... .|+...|.--+......++.++|.+++++.++. -|+. .
T Consensus 612 ~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~K 686 (913)
T KOG0495|consen 612 EAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHK 686 (913)
T ss_pred HhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHH
Confidence 875 456778888888889999999999999998874 456677776666666789999999999998874 4555 4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041882 358 TYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDAC 437 (491)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 437 (491)
.|..+.+.+-+.++.+.|...|..-.+. ++-.+..|..+.+.--+.|..-+|..++++..-++ .-+...|-..|..=.
T Consensus 687 l~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~El 764 (913)
T KOG0495|consen 687 LWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMEL 764 (913)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHH
Confidence 6677777888899999999988877664 34456788888888889999999999999998664 337788999999888
Q ss_pred hcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCC-cchhhhhHhh
Q 041882 438 IGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMG-TCVVIDLFQK 486 (491)
Q Consensus 438 ~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~k 486 (491)
+.|+.+.+-..+-+..+.- |++..-+..-.|...+-+ +...++.++|
T Consensus 765 R~gn~~~a~~lmakALQec--p~sg~LWaEaI~le~~~~rkTks~DALkk 812 (913)
T KOG0495|consen 765 RAGNKEQAELLMAKALQEC--PSSGLLWAEAIWLEPRPQRKTKSIDALKK 812 (913)
T ss_pred HcCCHHHHHHHHHHHHHhC--CccchhHHHHHHhccCcccchHHHHHHHh
Confidence 8888666555544433333 888888888888877666 5555666665
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.7e-11 Score=104.14 Aligned_cols=292 Identities=13% Similarity=0.074 Sum_probs=208.9
Q ss_pred hcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHH
Q 041882 123 KAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASR 202 (491)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 202 (491)
-.|+|.+|++...+-.+.+-. ....|..-..+.-..|+.+.+-.++.+.-+..-.++....-...+.....|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 358888888888887665532 3445555666666778888888888887765334455555666677778888888888
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHhHHHHHHH
Q 041882 203 VFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNA-------VTYALLMEGLCFKGEYNEAKKMMF 275 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~ 275 (491)
-++.+.+.+.. ++........+|.+.|++.....++..+.+.|.--+. .+|..++.-....+..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 88888776544 6677788888888888888888888888887765443 356667766666666666556666
Q ss_pred HHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041882 276 DMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPN 355 (491)
Q Consensus 276 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 355 (491)
..... ...++..-.+++.-+.++|+.++|.++..+..+++..|+ .. ..-.+.+.++...-.+..+.-... .+-+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~-h~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQ-HPED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHh-CCCC
Confidence 55443 255566667777888888999999998888888776655 11 222345667777777666665443 2444
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 041882 356 AATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRF 424 (491)
Q Consensus 356 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 424 (491)
+..+..+...|.+.+.|.+|...|+...+. .|+..+|..+.+++.+.|+..+|.+..++..-.-.+|
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 567788888888999999999999988774 4888889999999999999999988888876443333
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.5e-11 Score=104.26 Aligned_cols=281 Identities=14% Similarity=0.110 Sum_probs=125.8
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 041882 160 DRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLF 239 (491)
Q Consensus 160 ~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 239 (491)
|+|..|+++..+-.+.+-.| ...|..-..+.-..|+.+.+-.++.+..+.--.++....-+........|+++.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 55555555555444443221 23333344444445555555555555444322233334444444445555555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCh-------hcHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 240 EDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQL-------VNFGVLMSDLGKRGKIEEAKSLLSEM 312 (491)
Q Consensus 240 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~ 312 (491)
+++.+.+.. ++........+|.+.|++..+..++..+.+.+.-.+. .++..+++-....+..+.-...|+..
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 555444332 3444445555555555555555555555554433321 23444444444444444444444444
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 041882 313 KKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLE 392 (491)
Q Consensus 313 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 392 (491)
... .+.++..-.+++.-+.+.|+.++|.++.++..+.+..|+.. ..-.+.+-++.+.-++..++-... .+.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHh-CCCChh
Confidence 332 22234444444444555555555555555554444333311 111233444444444444443332 112234
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHH
Q 041882 393 TFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIR 450 (491)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 450 (491)
.+.+|...|.+.+.|.+|...|+...+ ..|+..+|+-+-.++-+.|+..++.+..+
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 444555555555555555555554443 24455555555555555555444444433
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-10 Score=101.60 Aligned_cols=329 Identities=8% Similarity=-0.017 Sum_probs=220.7
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcC-HHH-HH
Q 041882 73 KHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRT-LQS-FN 150 (491)
Q Consensus 73 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~-~~ 150 (491)
..|...+-.....+.+.|..+.|.+.+......- |..-..|..|..... +.+.+..+ .... +.+ ... --
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit---~~e~~~~l----~~~l-~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELIT---DIEILSIL----VVGL-PSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhc---hHHHHHHH----HhcC-cccchHHHHH
Confidence 3444444444555667777888888777766543 444444444444332 22222221 1111 111 111 12
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHh
Q 041882 151 SLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVP--PTVVTYNSLIGFLCR 228 (491)
Q Consensus 151 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~ 228 (491)
.+..++-...+.+++.+-.+.+...|+.-+...-+....+.....+++.|+.+|+++.+...- -|..+|+.++..-..
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 234455555677888888888888777655555555555666778899999999998886421 256677776644322
Q ss_pred cCChh-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHH
Q 041882 229 TGEMG-KAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKS 307 (491)
Q Consensus 229 ~~~~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 307 (491)
..... -|..+++ -... -+.|...+.+-|.-.++.++|...|++.++.+ +-....|+.+..-|....+...|.+
T Consensus 312 ~skLs~LA~~v~~---idKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 312 KSKLSYLAQNVSN---IDKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hHHHHHHHHHHHH---hccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 11111 1111111 1112 34567777888888888888888888888775 4455677778888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041882 308 LLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRH 387 (491)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 387 (491)
-++.+++-++. |-..|-.+.++|.-.+.+.-|+-.|++..+.. +-|...|..|.++|.+.++.++|++.|......|-
T Consensus 386 sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 386 SYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 88888887665 88888888888888888888888888887753 55677888888888888899999998888888752
Q ss_pred CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 388 CPRLETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 388 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
.+...+..+.+.|-+.++..+|.+.|++..+
T Consensus 464 -te~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 464 -TEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred -cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3567788888888888888888888887764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-12 Score=120.79 Aligned_cols=200 Identities=14% Similarity=0.019 Sum_probs=87.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHH
Q 041882 215 TVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMS 294 (491)
Q Consensus 215 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 294 (491)
.+.+|-++..+|.-.++.+.|++.|++.++.... ...+|+.+-.-+.....+|.|...|+..+... +-+-..|-.+.-
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~ 497 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGT 497 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhh
Confidence 3444555555555555555555555554443211 33444444444444444555555554443221 111112222334
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 041882 295 DLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEG 374 (491)
Q Consensus 295 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 374 (491)
.|.+.++++.|+-.|+.+.+.++. +.+....+...+.+.|+.++|++++++..... +.|+..--..+..+...+++++
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred heeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHH
Confidence 444555555555555555444433 34444444444444555555555555444332 2222222222333344445555
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 375 SLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 375 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
|...++++.+. ++.+..++..+...|.+.|+.+.|+.-|--+.+
T Consensus 576 al~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 576 ALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 55555555442 112233444444445555555555444444443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-12 Score=120.23 Aligned_cols=282 Identities=13% Similarity=0.062 Sum_probs=219.2
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CcCHHHHHHHHHHHHhCCChhhHHHH
Q 041882 91 DFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDC--VRTLQSFNSLLDILVDNDRVDDAKRM 168 (491)
Q Consensus 91 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~ 168 (491)
+..+|..+|..+..+- ..+.++...+..+|...+++++|..+|+.+..... ..+.+.|.+.+--+-+. -++.+
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 5678888888855543 45568888999999999999999999999876531 12667777776654322 22222
Q ss_pred H-HHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041882 169 F-DDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGT 247 (491)
Q Consensus 169 ~-~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 247 (491)
+ +++.+.. +-.+.+|..+..+|.-.++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+..+..
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-- 484 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV-- 484 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC--
Confidence 2 2333332 346789999999999999999999999999886433 7889999999999999999999999988765
Q ss_pred CCCHHHHHH---HHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 041882 248 YPNAVTYAL---LMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTY 324 (491)
Q Consensus 248 ~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 324 (491)
|+..|++ +.-.|.+.++++.|+-.|+...+.+ +-+.+....+...+-+.|+.++|+.+++++...+.+ |+..-
T Consensus 485 --~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 485 --DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred --CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 5555554 5567889999999999999988775 556677777888888999999999999999888776 65555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041882 325 NILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSR 386 (491)
Q Consensus 325 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 386 (491)
-..+..+...+++++|+..++++++. ++-+...|..+...|.+.|+.+.|..-|..+.+..
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 55677778889999999999999874 23444577778889999999999999999998864
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-10 Score=101.84 Aligned_cols=80 Identities=11% Similarity=0.037 Sum_probs=60.3
Q ss_pred HhhhcCChHHHHHHHHHhhhCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 041882 50 DLKEIRDPDEALSLFHRHHQMGSKHS-YPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVD 128 (491)
Q Consensus 50 ~l~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 128 (491)
.+-++|.+++|+++|.+.++. .|+ +.-|....-+|...|+|+.+.+--....+.+ +.-...+..-..++-..|+++
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHHhhccHH
Confidence 355678999999999999874 566 6678888888999999999988888887765 333455555666666777777
Q ss_pred HHHH
Q 041882 129 KAIE 132 (491)
Q Consensus 129 ~a~~ 132 (491)
+|+.
T Consensus 201 eal~ 204 (606)
T KOG0547|consen 201 EALF 204 (606)
T ss_pred HHHH
Confidence 7653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-11 Score=117.92 Aligned_cols=349 Identities=12% Similarity=0.118 Sum_probs=220.2
Q ss_pred HHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 041882 62 SLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFD 141 (491)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 141 (491)
.++-.+...|+.|+..+|..++.-|+..|+.+.|- +|..|.-...+.+...|+.++....+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667778899999999999999999999999999 9999999888889999999999999999888775
Q ss_pred CCcCHHHHHHHHHHHHhCCChhh---HHHHHHHHHH----CCCCCCHHhHH--------------HHHHHHHhcCChHHH
Q 041882 142 CVRTLQSFNSLLDILVDNDRVDD---AKRMFDDADK----MGFRPNLISFN--------------VMIKGRLKKGEWEEA 200 (491)
Q Consensus 142 ~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~----~~~~p~~~~~~--------------~ll~~~~~~~~~~~a 200 (491)
.|...+|..|..+|...||... +.+.+..+.. .|+..-..-+- .++....-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999654 3332222221 12211111111 122223334455555
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 041882 201 SRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (491)
++++..+...... . .+..+++-+.... .-..++........-.|++.+|.+++++-..+|+.+.|..++.+|.+.
T Consensus 159 lkll~~~Pvsa~~-~--p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWN-A--PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHHhhCCccccc-c--hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 5555444332111 0 1111233333222 222333333222211578999999999999999999999999999999
Q ss_pred CCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 041882 281 GCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYR 360 (491)
Q Consensus 281 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 360 (491)
|.+.+.+-|..|+-+ .++...++.++.-|.+.|+.|+..|+...+..+..+|....+ +.| .++...++
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e~-sq~~hg~t 301 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EEG-SQLAHGFT 301 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------ccc-cchhhhhh
Confidence 998888887777755 788888889999999999999999998888877775542211 122 23333333
Q ss_pred HHHHHHHhcC-----CHH-----HHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCC-CHH
Q 041882 361 MMVDGFLRVE-----DFE-----GSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRK--MRF-DLK 427 (491)
Q Consensus 361 ~li~~~~~~~-----~~~-----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~-~~~ 427 (491)
+-+.+-+-.| +.+ -....+++..-.|+.....+|.. ..-...+|+-++..++-..|..-. +.+ +..
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~-c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSM-CEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHH-HHHHHHcCCCchHHHHHhhhcCCccccCcchHH
Confidence 3333222223 111 11222222223344444444443 333344788888888888776322 222 334
Q ss_pred HHHHHHHHHHhcC
Q 041882 428 AWEGLVTDACIGD 440 (491)
Q Consensus 428 ~~~~ll~~~~~~~ 440 (491)
.+..++..|.+..
T Consensus 381 a~~~~lrqyFrr~ 393 (1088)
T KOG4318|consen 381 AFGALLRQYFRRI 393 (1088)
T ss_pred HHHHHHHHHHHHH
Confidence 5666666555443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.5e-09 Score=94.45 Aligned_cols=396 Identities=12% Similarity=0.085 Sum_probs=284.4
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCH-HHHHH
Q 041882 73 KHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTL-QSFNS 151 (491)
Q Consensus 73 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 151 (491)
+.+...|..-..-=..++++..|..+|+..+... ..+...|...+.+=.+...+..|..+|++....= |-+ ..|-.
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyK 146 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYK 146 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHH
Confidence 3444455555555556789999999999999877 4567788888888899999999999999987752 333 45666
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 041882 152 LLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGE 231 (491)
Q Consensus 152 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 231 (491)
.+..=-..|++..|.++|+.-.+. .|+...|++.++.=.+.+.++.|..+++..+-. .|++.+|--..+.=-+.|.
T Consensus 147 Y~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 147 YIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCc
Confidence 676667789999999999998875 799999999999999999999999999998864 5899999999998889999
Q ss_pred hhHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC--hhcHHHHHHHHHhcCChHHHHH
Q 041882 232 MGKAKGLFEDMIKK-GT-YPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQ--LVNFGVLMSDLGKRGKIEEAKS 307 (491)
Q Consensus 232 ~~~a~~~~~~~~~~-~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~ 307 (491)
...|..+|+...+. |- ..+...+.++..-=.+...++.|.-+|+-.+..- +.+ ...|..+...--+.|+....+.
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 99999999998764 11 1123334444444455667888888888877652 222 3445555554445566544433
Q ss_pred H--------HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHH---HH-HH-HH---Hhc
Q 041882 308 L--------LSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAA--TYR---MM-VD-GF---LRV 369 (491)
Q Consensus 308 ~--------~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~---~l-i~-~~---~~~ 369 (491)
. |+.++..++. |-.+|--.++.-...|+.+...++|++.... ++|-.. .|. .| |+ +| ...
T Consensus 302 ~Iv~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ 379 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEA 379 (677)
T ss_pred HHhhhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 3445555444 7777877887777788888888888888753 455321 111 11 11 11 246
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHh----HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcch
Q 041882 370 EDFEGSLKVLNAMLTSRHCPRLET----FSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGG 445 (491)
Q Consensus 370 ~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 445 (491)
.+++.+.++|+..++. ++....| |........++-+...|.+++...+ |.-|...+|...|..=.+.+.++..
T Consensus 380 ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRC 456 (677)
T ss_pred hhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHH
Confidence 7888888888888873 3333333 4444455567888888888888887 6678888888888876777777777
Q ss_pred hHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhh
Q 041882 446 LVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDL 483 (491)
Q Consensus 446 ~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 483 (491)
-+.+++.++.+ |.+-..+...+..-..+|+++.+..
T Consensus 457 RkLYEkfle~~--Pe~c~~W~kyaElE~~LgdtdRaRa 492 (677)
T KOG1915|consen 457 RKLYEKFLEFS--PENCYAWSKYAELETSLGDTDRARA 492 (677)
T ss_pred HHHHHHHHhcC--hHhhHHHHHHHHHHHHhhhHHHHHH
Confidence 77777776665 8888888888888888887765543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.5e-10 Score=99.41 Aligned_cols=84 Identities=11% Similarity=0.061 Sum_probs=64.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHh
Q 041882 80 ASLIYKLARARDFDAVETVLGYIQDFNIRCK-ETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVD 158 (491)
Q Consensus 80 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 158 (491)
.....-|.+.|.+++|++.|.+.++.. |+ +..|.....+|...|+|++..+.-.+..+.++. -+.++..-.+++-.
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHEQ 195 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHHh
Confidence 344567889999999999999999874 56 788999999999999999999988888776422 23455555566666
Q ss_pred CCChhhHH
Q 041882 159 NDRVDDAK 166 (491)
Q Consensus 159 ~~~~~~a~ 166 (491)
.|++++|+
T Consensus 196 lg~~~eal 203 (606)
T KOG0547|consen 196 LGKFDEAL 203 (606)
T ss_pred hccHHHHH
Confidence 66666654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.5e-09 Score=89.86 Aligned_cols=411 Identities=11% Similarity=0.038 Sum_probs=237.9
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA 124 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (491)
+|-+..+....++..|+.+++.....+-.....+---+...+.+.|++++|...+..+.... .++...+..|..++.-.
T Consensus 26 ~P~Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 26 MPELEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYL 104 (557)
T ss_pred CchHHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHH
Confidence 34488899999999999999887644422222333445567778999999999999988865 67778888888888888
Q ss_pred CCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 041882 125 HLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVF 204 (491)
Q Consensus 125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 204 (491)
|.+.+|..+-.+..+ ++-.-..|+....+.++-++...+-..+... ..---+|.......-.+++|++++
T Consensus 105 g~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvY 174 (557)
T KOG3785|consen 105 GQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVY 174 (557)
T ss_pred HHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999988766543 3333344455555667766666666555432 111223333333444678899999
Q ss_pred HHHHhCCCCCChhhHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC--
Q 041882 205 DEMLEREVPPTVVTYNSL-IGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRG-- 281 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-- 281 (491)
......+ |.-...|.- .-+|.+..-++-+.++++-..+. ++-++...+..+....+.=+-..|..-.+.+..++
T Consensus 175 krvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~ 251 (557)
T KOG3785|consen 175 KRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ 251 (557)
T ss_pred HHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc
Confidence 8887652 344444443 34566777788888888877765 33234444443332222211112222222222111
Q ss_pred ------------------------CCC-----ChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-
Q 041882 282 ------------------------CKP-----QLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYL- 331 (491)
Q Consensus 282 ------------------------~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~- 331 (491)
+-| -+..--.|+-.|.+++++.+|..+.+++.-. .|-....-.++.+-
T Consensus 252 ~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aal 329 (557)
T KOG3785|consen 252 EYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAAL 329 (557)
T ss_pred cchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHh
Confidence 001 0112223455677888888888887665421 22222222222211
Q ss_pred ----HhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCC
Q 041882 332 ----CKEDRAAEAYKVLTEMQIGGCKPNA-ATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGK 406 (491)
Q Consensus 332 ----~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 406 (491)
.......-|.+.|+-.-+++..-|. .--.++..++.-..++++.+.+++.+..--...|... -.+..+++..|+
T Consensus 330 GQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgn 408 (557)
T KOG3785|consen 330 GQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGN 408 (557)
T ss_pred hhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcC
Confidence 1112344566666555444333222 2234556666667788888888888776532233333 457899999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCC
Q 041882 407 VDDACFVLEEMEKRKMRFDLKAWEGLVTDACIG-DGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMG 476 (491)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g 476 (491)
+.+|.++|-++....++ |..+|-.++.-++.. ++..-++..+ ...+-.-+...-+...+...++.+
T Consensus 409 y~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~ 475 (557)
T KOG3785|consen 409 YVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKAN 475 (557)
T ss_pred hHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHH
Confidence 99999999888866555 556666666544444 4444444333 333322233333444445444444
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-10 Score=113.74 Aligned_cols=267 Identities=14% Similarity=0.074 Sum_probs=175.4
Q ss_pred CCCHHhHHHHHHHHHh-----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHhh
Q 041882 73 KHSYPSYASLIYKLAR-----ARDFDAVETVLGYIQDFNIRCKETLFISLIQHYG---------KAHLVDKAIEVFNRMT 138 (491)
Q Consensus 73 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 138 (491)
..+...|...+++... .+++++|.+.++...+.. |.+...+..+..++. ..+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4455555555544321 246788888888888775 445566666655443 2245788888888888
Q ss_pred hCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh
Q 041882 139 SFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVT 218 (491)
Q Consensus 139 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 218 (491)
+.+.. +..++..+..++...|++++|...|++..+.+ +.+...+..+..++...|++++|...+++..+.+.. +...
T Consensus 332 ~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 87633 77788888888888889999999998888764 224566777788888889999999999888876433 2333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-hhcHHHHHHHHH
Q 041882 219 YNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQ-LVNFGVLMSDLG 297 (491)
Q Consensus 219 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~ 297 (491)
+..++..+...|++++|...++++.....+-+...+..+..++...|+.++|...+..+... .|+ ....+.+...|.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 34445556678888889988888876532224555667777788889999999888887655 333 333444555566
Q ss_pred hcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 298 KRGKIEEAKSLLSEMKKRQ-YKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIG 350 (491)
Q Consensus 298 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 350 (491)
..| +.+...++.+.+.. ..+....+ +-..|.-.|+.+.+..+ +++.+.
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 666 46777666665431 11222222 33334445666666555 776654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.8e-09 Score=97.19 Aligned_cols=286 Identities=12% Similarity=0.047 Sum_probs=227.2
Q ss_pred CcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 041882 143 VRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSL 222 (491)
Q Consensus 143 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 222 (491)
..++.....-..-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=..+++.- +-...+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 3466666777778888899999999999988763 4556666667778899999888888778888763 4478899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCh
Q 041882 223 IGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKI 302 (491)
Q Consensus 223 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 302 (491)
.--|...|...+|.+.|.+....... -...|-.+...|+..+..++|+..+...-+.= +-...-+-.+.--|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccH
Confidence 99999999999999999998765333 24578888899999999999999988776541 11122233344557889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041882 303 EEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIG------GCKPNAATYRMMVDGFLRVEDFEGSL 376 (491)
Q Consensus 303 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~~~~~~a~ 376 (491)
+.|.++|.......+. |+...+-+.......+.+.+|..+|+..+.. .......+++.+..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999999999887554 8888888888888889999999999887632 11123456788889999999999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041882 377 KVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDA 436 (491)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 436 (491)
..+++.+... +.+..++.++.-.|...|+++.|...|.+.. .+.||..+-..++..+
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 9999999873 4688999999999999999999999999988 4688887777777643
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.1e-10 Score=110.46 Aligned_cols=269 Identities=11% Similarity=0.067 Sum_probs=190.5
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHh---------CCChhhHHHHHHHHH
Q 041882 108 RCKETLFISLIQHYGK-----AHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVD---------NDRVDDAKRMFDDAD 173 (491)
Q Consensus 108 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~ 173 (491)
+.+...|...+.+-.. .+++++|+..|++..+.++. +...|..+..++.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4455555555554321 24568999999999887633 56677666655542 245789999999998
Q ss_pred HCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 041882 174 KMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVT 253 (491)
Q Consensus 174 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 253 (491)
+.. +-+...+..+...+...|++++|...|++..+.+.. +...+..+..++...|++++|+..+++..+.... +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 875 236677888888889999999999999999987533 6778888999999999999999999999987544 3333
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 041882 254 YALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCK 333 (491)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 333 (491)
+..++..+...|++++|...+++......+.+...+..+..++...|+.++|...+.++...... +....+.+...|..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhc
Confidence 33445556778999999999999876642234555677888888999999999999988665322 44556666667777
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041882 334 EDRAAEAYKVLTEMQIGG-CKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSR 386 (491)
Q Consensus 334 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 386 (491)
.| ++|...++.+.+.. ..+....+.. ..+.-.|+.+.+... +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLP--LVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHH--HHHHHHhhhHHHHHH-HHhhccc
Confidence 77 47777777765531 1222222223 334455676666665 7777754
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-10 Score=99.08 Aligned_cols=197 Identities=14% Similarity=0.159 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 041882 113 LFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRL 192 (491)
Q Consensus 113 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 192 (491)
.+..+...+...|++++|.+.+++..... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 33444444444444444444444443332 1133344444444444444444444444444332 112233334444444
Q ss_pred hcCChHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 041882 193 KKGEWEEASRVFDEMLEREV-PPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAK 271 (491)
Q Consensus 193 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 271 (491)
..|++++|.+.++...+... ......+..+...+...|++++|...+++..+.... +...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHH
Confidence 44444444444444443211 112223344444445555555555555554443211 2334444444555555555555
Q ss_pred HHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 041882 272 KMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMK 313 (491)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 313 (491)
..+++.... .+.+...+..+...+...|+.+.|..+.+.+.
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555554443 12233333444444445555555555544443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.4e-10 Score=98.76 Aligned_cols=199 Identities=13% Similarity=-0.004 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 041882 217 VTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDL 296 (491)
Q Consensus 217 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 296 (491)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 344444455555555555555555554432 1133444444555555555555555555554442 22333444445555
Q ss_pred HhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 297 GKRGKIEEAKSLLSEMKKRQY-KPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGS 375 (491)
Q Consensus 297 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 375 (491)
...|++++|...++....... ......+..+...+...|++++|...+.+..... +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555544311 1123344455556666666666666666665532 23344555566666666666666
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 376 LKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
...++++.+. .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 6666666654 223445555555666666666666666665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-07 Score=87.52 Aligned_cols=260 Identities=12% Similarity=0.046 Sum_probs=154.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-----------
Q 041882 217 VTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPN---AVTYALLMEGLCFKGEYNEAKKMMFDMAYRGC----------- 282 (491)
Q Consensus 217 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------- 282 (491)
..|..+.+.|-..|+.+.|..+|++..+-..+-- ..+|......=.+..+++.|.++++......-
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 3567777778888888888888888776533211 23455555555566777777777766543211
Q ss_pred CC------ChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 041882 283 KP------QLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA 356 (491)
Q Consensus 283 ~~------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 356 (491)
++ +...|...++.-...|-++....+|+++.+..+. ++...-.....+-.+.-++++.+.+++-...--.|+.
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 11 1233444555555667788888888888877665 4443333343445566678888888775554334554
Q ss_pred -HHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHH--hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHH
Q 041882 357 -ATYRMMVDGFLR---VEDFEGSLKVLNAMLTSRHCPRLE--TFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFD--LKA 428 (491)
Q Consensus 357 -~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~ 428 (491)
..|+..+.-+.+ ....+.|..+|+++++ |.+|... .|......--+.|....|..++++.... +++. ...
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~m 624 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDM 624 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHH
Confidence 355655554443 2468999999999998 5655432 2222333334568888999999997653 4443 357
Q ss_pred HHHHHHHHHhcCCCcchhHHHHHHhhhhhhhh--hhHHHHHHHHHhcCCCcchhh
Q 041882 429 WEGLVTDACIGDGNAGGLVEIRDMRDYSMAIS--SVMNVVDLLWTYLGMGTCVVI 481 (491)
Q Consensus 429 ~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~--~~~~~~~l~~~~~~~g~~~~~ 481 (491)
||..|.-....=+....-..+++.++. + |+ ...-+...+..-.+.|....+
T Consensus 625 yni~I~kaae~yGv~~TR~iYekaIe~-L-p~~~~r~mclrFAdlEtklGEidRA 677 (835)
T KOG2047|consen 625 YNIYIKKAAEIYGVPRTREIYEKAIES-L-PDSKAREMCLRFADLETKLGEIDRA 677 (835)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHh-C-ChHHHHHHHHHHHHHhhhhhhHHHH
Confidence 888887655555544555555555544 2 32 233344445555555544433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.7e-11 Score=101.15 Aligned_cols=230 Identities=11% Similarity=-0.010 Sum_probs=190.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 041882 185 NVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFK 264 (491)
Q Consensus 185 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 264 (491)
+.+.++|.+.|.+.+|.+-++...+. .|-+.||-.|-++|.+..++..|+.++.+-.+. ++-|+....-+...+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56788999999999999999887776 456778888999999999999999999988775 333444455567778888
Q ss_pred CCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041882 265 GEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVL 344 (491)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 344 (491)
++.++|.++|+...+.. +.+......+...|.-.++++.|.++|+++...|+. ++..|+.+.-+|...++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999988875 566677777777788889999999999999999988 8999999999999999999999999
Q ss_pred HHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 345 TEMQIGGCKPNA--ATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 345 ~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
.+....--.|+. .+|-.+.......||+..|.+.|+-.+.++ ..+...++.|...-.+.|++++|..+++.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 888765333443 467777777788899999999999888864 345778899988889999999999999988754
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.1e-09 Score=99.34 Aligned_cols=289 Identities=15% Similarity=0.109 Sum_probs=132.9
Q ss_pred hhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----C
Q 041882 51 LKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA-----H 125 (491)
Q Consensus 51 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~ 125 (491)
+...|++++|++.++.-.. .+.............+.+.|++++|..+|..+.+.+ |.+..-|..+..+..-. .
T Consensus 14 l~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccc
Confidence 4455666666666654332 223333344555566666666666666666666665 34444444444444221 1
Q ss_pred CHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChh-hHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 041882 126 LVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVD-DAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVF 204 (491)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 204 (491)
+.+...++++++...- |...+...+.-.+.....+. .+..++..+...|++ .+|+.+-..|......+-..+++
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHH
Confidence 3455555555554432 22222222222222212222 233334444444433 23444444444333333344444
Q ss_pred HHHHhC----C----------CCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHh
Q 041882 205 DEMLER----E----------VPPTV--VTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYN 268 (491)
Q Consensus 205 ~~~~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 268 (491)
...... + -+|+. .++.-+...|...|++++|+++++..++.... .+..|..-...+-..|++.
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHH
Confidence 443321 0 11222 12233444555555666666666555554211 2444555555555556666
Q ss_pred HHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH------HH--HHHHHHHHhcCCHHHH
Q 041882 269 EAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVV------TY--NILINYLCKEDRAAEA 340 (491)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~--~~li~~~~~~~~~~~a 340 (491)
+|.+.++...... .-|...-+-.+..+.+.|++++|.+++......+..|... .| .....+|.+.|++..|
T Consensus 246 ~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 246 EAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 6555555555543 3344444445555555555555555555555443322111 11 2233445555555555
Q ss_pred HHHHHHHH
Q 041882 341 YKVLTEMQ 348 (491)
Q Consensus 341 ~~~~~~~~ 348 (491)
++.|..+.
T Consensus 325 Lk~~~~v~ 332 (517)
T PF12569_consen 325 LKRFHAVL 332 (517)
T ss_pred HHHHHHHH
Confidence 55555443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.1e-09 Score=100.83 Aligned_cols=128 Identities=14% Similarity=0.024 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLR 368 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 368 (491)
+..+...|...|++++|.++++...++.+. .+..|..-...+-+.|++.+|.+.++...... .-|...-+..+..+.+
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHH
Confidence 344556666777777777777777776443 46667777777777777777777777776643 2344444445566677
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH--------hHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 369 VEDFEGSLKVLNAMLTSRHCPRLE--------TFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
+|++++|.+++..+...+..|... .......+|.+.|++..|++-|..+.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 777777777777776654332211 12344567777777777776665554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5e-08 Score=90.70 Aligned_cols=416 Identities=12% Similarity=0.097 Sum_probs=232.5
Q ss_pred hhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 51 LKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKA 130 (491)
Q Consensus 51 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 130 (491)
|...|+.++|....+...+.+ .-+...|..+.-.+...+++++|.+.|......+ +.|..++.-+.-.-++.++++..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence 455678888888887776644 4455677777777777788888888888888776 66777777776667777888877
Q ss_pred HHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCCHHhHHHHH------HHHHhcCChHHHHHH
Q 041882 131 IEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMG-FRPNLISFNVMI------KGRLKKGEWEEASRV 203 (491)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~ll------~~~~~~~~~~~a~~~ 203 (491)
......+.+.. +.....|..+..++...|+...|..++++..+.. ..|+...+.... ....+.|..+.|++.
T Consensus 129 ~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 129 LETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 77777766653 2245677788888888888888888888877653 245555553322 234566777777776
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCCHhHHH-HHHHHHHHcC
Q 041882 204 FDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLM-EGLCFKGEYNEAK-KMMFDMAYRG 281 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~-~~~~~~~~~~ 281 (491)
+...... +.-....-..-...+.+.+++++|..++..++.. .||...|...+ .++.+..+..++. .+|....+.
T Consensus 208 L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~- 283 (700)
T KOG1156|consen 208 LLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK- 283 (700)
T ss_pred HHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-
Confidence 6554432 1112222334455677788888888888888876 34555444443 4443333333333 455544433
Q ss_pred CCCChhcHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CC-----
Q 041882 282 CKPQLVNFG-VLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQI----GG----- 351 (491)
Q Consensus 282 ~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~----- 351 (491)
.|....-. .=+.......-.+..-.++......|+.+ ++..+...|-.....+-..++...+.. .|
T Consensus 284 -y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 284 -YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred -CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 11111110 01111111111223334444555555442 233333333222211111111111111 11
Q ss_pred -----CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041882 352 -----CKPNAATY--RMMVDGFLRVEDFEGSLKVLNAMLTSRHCPR-LETFSCLLVGLLKGGKVDDACFVLEEMEKRKMR 423 (491)
Q Consensus 352 -----~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 423 (491)
-+|+...| -.++..+-..|+++.|..+++..+++ .|+ +..|..-.+.+...|++++|..++++..+.+.
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~- 436 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT- 436 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-
Confidence 14555443 34566777888888888888888775 344 34555666778888888888888888876532
Q ss_pred CCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhh-------hhhHHHHHHHHHhcCCCcchh
Q 041882 424 FDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAI-------SSVMNVVDLLWTYLGMGTCVV 480 (491)
Q Consensus 424 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~ 480 (491)
+|...=.--.....+.+..++|.+.+-..-+.|... .=......-|..|.++|++..
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ 500 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGL 500 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHH
Confidence 232222233333444555555555554444444211 112222333455666666643
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-08 Score=92.76 Aligned_cols=431 Identities=11% Similarity=-0.010 Sum_probs=270.3
Q ss_pred CCCCCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041882 40 KTKEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQ 119 (491)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 119 (491)
+...+..+++....+.++.-|+-+-++....+ -|+...-.+++.+.-.|+++.|..++..-.-. ..|.........
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 33445667777888888999988888776544 56666777888888889999988888665332 346677777888
Q ss_pred HHHhcCCHHHHHHHHHHh----hhCC---------CCcCHHH----HHHHH-------HHHHhCCChhhHHHHHHHHHHC
Q 041882 120 HYGKAHLVDKAIEVFNRM----TSFD---------CVRTLQS----FNSLL-------DILVDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~----~~~~---------~~~~~~~----~~~ll-------~~~~~~~~~~~a~~~~~~~~~~ 175 (491)
.+.+..++++|..++... .... +.+|..- -+.-. ..|....++++|...|.+....
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~ 170 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA 170 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc
Confidence 888999999999988822 1110 0001000 11111 2333344566777676665543
Q ss_pred CCCCCHHhHHHHHH---HHH-----------------hcC-ChHHHHHHHHHHHh----------------CCCCCChhh
Q 041882 176 GFRPNLISFNVMIK---GRL-----------------KKG-EWEEASRVFDEMLE----------------REVPPTVVT 218 (491)
Q Consensus 176 ~~~p~~~~~~~ll~---~~~-----------------~~~-~~~~a~~~~~~~~~----------------~~~~~~~~~ 218 (491)
|...|..+.. ... -.+ +.+....+|+.... .+..-+...
T Consensus 171 ----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dl 246 (611)
T KOG1173|consen 171 ----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDL 246 (611)
T ss_pred ----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHH
Confidence 4444332221 111 001 11111112221100 012224444
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHh
Q 041882 219 YNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGK 298 (491)
Q Consensus 219 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (491)
......-+...+++.+..++.+.+.+. .++....+..-|.++...|+..+...+=.++++.- +....+|-++.-.|..
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHH
Confidence 555556677788899999999988876 33455556666678888888888887777777763 5567788888888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041882 299 RGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKV 378 (491)
Q Consensus 299 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 378 (491)
.|+..+|.+.|.+....+.. -...|-.+...|+-.+..++|...+...-+. ++-...-+--+.--|.+.++.+.|.++
T Consensus 325 i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred hcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 89999999999887765433 3456777888888888888888877766543 111111122233346667777777777
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHhcCCCcchhHHHHHH
Q 041882 379 LNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKR--KMR----FDLKAWEGLVTDACIGDGNAGGLVEIRDM 452 (491)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~----~~~~~~~~ll~~~~~~~~~~~~~~~~~~m 452 (491)
|.++... .+.|+.+.+-+.-.....+.+.+|..+|+..... .+. --..+++.|..++.+.+.+++++..+++.
T Consensus 403 f~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 403 FKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 7777664 2335666666666666677777777777766521 011 12345666777777777777777777765
Q ss_pred hhhhhhhhhhHHHHHHHHHhcCCCcchhhhhHh
Q 041882 453 RDYSMAISSVMNVVDLLWTYLGMGTCVVIDLFQ 485 (491)
Q Consensus 453 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 485 (491)
.... |.++.....+|.+|.-+|..+.|..+-
T Consensus 482 L~l~--~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 482 LLLS--PKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHcC--CCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 5554 777777777777777777776665553
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.6e-10 Score=108.87 Aligned_cols=274 Identities=16% Similarity=0.148 Sum_probs=152.2
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCC
Q 041882 98 VLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGF 177 (491)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 177 (491)
.+-.+...|+.|+..+|..+|..|+..|+.+.|- +|.-|...+.+.+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455666777777777888888888888877777 7777766666666777777777777777766554
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHH
Q 041882 178 RPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIK-KGTYPNAVTYAL 256 (491)
Q Consensus 178 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ 256 (491)
.|...+|..|..+|...||+..-..+=+.+. .+...+...|.-..-..++..+.- -+..||..+
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe------------~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n--- 144 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLE------------SINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN--- 144 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHH------------HHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---
Confidence 4667778888888887777655111111111 122223333333333333322211 112223221
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 041882 257 LMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDR 336 (491)
Q Consensus 257 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 336 (491)
.+.-....|-|+.+.+++..+....-. . .+..+++-+... ..-.+++........-.|++.+|..++.+-...|+
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~ 219 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGD 219 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCccccc-c--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Confidence 222223344455554444333221100 0 111112222221 12222232222222114677777777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCC
Q 041882 337 AAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGK 406 (491)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 406 (491)
.+.|..++.+|.+.|++.+..-|..++.+ .++...++.+++-|.+.|+.|+..|+...+..+..+|.
T Consensus 220 ~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 220 VDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 77777777777777777777766666655 66667777777777777777777777777666666544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.9e-10 Score=93.87 Aligned_cols=230 Identities=13% Similarity=0.022 Sum_probs=160.3
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 041882 150 NSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRT 229 (491)
Q Consensus 150 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 229 (491)
+.+..+|.+.|.+.+|.+.++...+. .|-+.||..|-+.|.+.++...|+.+|.+-.+. .+-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 66777777888888888877776665 456667777777888888888888887776664 333444445566777777
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHH
Q 041882 230 GEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLL 309 (491)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 309 (491)
++.++|.++|+...+... .++.....+...|.-.++.+.|+++|+++...|+ -+...|+.+.-+|.-.++++-+..-|
T Consensus 304 ~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 778888888887776532 2555556666677777778888888888877773 45666777777777777777777777
Q ss_pred HHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 310 SEMKKRQYKPD--VVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 310 ~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 385 (491)
.+....-..|+ ..+|-.+.......|++..|.+.|+-....+ .-+...++.+.-.-.+.|++++|..++......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 77665433333 3456666666667788888888887776553 444567777776677778888888888777663
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-11 Score=77.95 Aligned_cols=50 Identities=30% Similarity=0.551 Sum_probs=40.3
Q ss_pred CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041882 389 PRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACI 438 (491)
Q Consensus 389 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 438 (491)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.+|+++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67778888888888888888888888888888888888888888887764
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.6e-09 Score=98.48 Aligned_cols=238 Identities=18% Similarity=0.159 Sum_probs=174.5
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhC-----C-CCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCC
Q 041882 181 LISFNVMIKGRLKKGEWEEASRVFDEMLER-----E-VPPTVV-TYNSLIGFLCRTGEMGKAKGLFEDMIKK-----GTY 248 (491)
Q Consensus 181 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~ 248 (491)
..++..+...|...|+++.|+.+++...+. | ..|... ..+.+...|...+++++|..+|+++... |-.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666889999999999999999887664 2 122322 2344777888999999999999998753 221
Q ss_pred -C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-----CC-CCC-hhcHHHHHHHHHhcCChHHHHHHHHHHHHc---C
Q 041882 249 -P-NAVTYALLMEGLCFKGEYNEAKKMMFDMAYR-----GC-KPQ-LVNFGVLMSDLGKRGKIEEAKSLLSEMKKR---Q 316 (491)
Q Consensus 249 -~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~ 316 (491)
| -..+++.|..+|.+.|++++|...++...+- +. .|. ...++.+...+...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 2356777888899999999998888776542 11 122 223566777788899999999998866542 1
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 041882 317 YKP----DVVTYNILINYLCKEDRAAEAYKVLTEMQIG-----G-CKPN-AATYRMMVDGFLRVEDFEGSLKVLNAMLT- 384 (491)
Q Consensus 317 ~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 384 (491)
+.+ -..+++.|...|...|++++|.+++++.... | ..+. ...++.+...|.+.+.+++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 222 2457899999999999999999999987653 1 1222 34677888899999999989888876543
Q ss_pred ---CCCC-C-CHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 385 ---SRHC-P-RLETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 385 ---~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
.|.. | ...+|..|...|.+.|++++|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2321 2 35688999999999999999999988876
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.5e-07 Score=86.97 Aligned_cols=371 Identities=10% Similarity=-0.019 Sum_probs=241.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH-HhH
Q 041882 106 NIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNL-ISF 184 (491)
Q Consensus 106 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~ 184 (491)
.+..+..+|..+.-+..++|+++.+.+.|++....-. ...+.|+.+...|...|.-..|..+++......-.|+. ..+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 3556888999999999999999999999999876533 36788999999999999999999999886654323433 333
Q ss_pred HHHHHHHH-hcCChHHHHHHHHHHHhC--C--CCCChhhHHHHHHHHHhc-----------CChhHHHHHHHHHHHcCCC
Q 041882 185 NVMIKGRL-KKGEWEEASRVFDEMLER--E--VPPTVVTYNSLIGFLCRT-----------GEMGKAKGLFEDMIKKGTY 248 (491)
Q Consensus 185 ~~ll~~~~-~~~~~~~a~~~~~~~~~~--~--~~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~ 248 (491)
-..-..|. +.+.+++++.+-.++... + -......|..+.-+|... ....++++.+++..+.+..
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33333343 346677777766666551 1 112334454454444422 1245788888888876543
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCC--------
Q 041882 249 PNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKR-QYKP-------- 319 (491)
Q Consensus 249 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~-------- 319 (491)
|+.+.-.+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+...+. +...
T Consensus 477 -dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 -DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred -CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 333333344457788899999999999998865777888888888888899999999998876543 1100
Q ss_pred ----------CHHHHHHHHHHHH------hcC-----------------CHHHHHHHHHHH--------HhCC-------
Q 041882 320 ----------DVVTYNILINYLC------KED-----------------RAAEAYKVLTEM--------QIGG------- 351 (491)
Q Consensus 320 ----------~~~~~~~li~~~~------~~~-----------------~~~~a~~~~~~~--------~~~~------- 351 (491)
...|...++..+- ..+ +..++.+..+.+ ...|
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 0111222221111 000 111111111110 0001
Q ss_pred --CC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 041882 352 --CK--PN------AATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRK 421 (491)
Q Consensus 352 --~~--~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 421 (491)
+. |+ ...|......+...++.++|...+.++.... +-....|......+...|++++|.+.|......
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l- 713 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL- 713 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc-
Confidence 01 11 1123344556777788888887777776642 345667777778888999999999999998864
Q ss_pred CCCC-HHHHHHHHHHHHhcCCCcchhH--HHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhh
Q 041882 422 MRFD-LKAWEGLVTDACIGDGNAGGLV--EIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDL 483 (491)
Q Consensus 422 ~~~~-~~~~~~ll~~~~~~~~~~~~~~--~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 483 (491)
.|+ .....++...+...|+..-+.+ .+.++.+. +|.++..|..+|.++.++|+...+..
T Consensus 714 -dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 714 -DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--DPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred -CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccchHHHHH
Confidence 454 5677788888888887555666 44555554 49999999999999999998776543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.2e-07 Score=85.55 Aligned_cols=382 Identities=15% Similarity=0.160 Sum_probs=233.3
Q ss_pred hHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041882 47 FVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHL 126 (491)
Q Consensus 47 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 126 (491)
-++.....|++++|++...++...+ +.+...+..-+.++.+.+.|++|+.+.+.-.... .+...+..=..+.-+.++
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHccc
Confidence 3455566789999999999999866 7777888888899999999999996665433211 111111122333457899
Q ss_pred HHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC---------------------------
Q 041882 127 VDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRP--------------------------- 179 (491)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p--------------------------- 179 (491)
.++|+..++-... .+..+...-...+.+.|++++|+++|+.+.+.+..-
T Consensus 95 ~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v 170 (652)
T KOG2376|consen 95 LDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEV 170 (652)
T ss_pred HHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCC
Confidence 9999999883322 244466777788889999999999999885543210
Q ss_pred CHHhHHHHHH---HHHhcCChHHHHHHHHHHHhCC-------CCCChh-------hHHHHHHHHHhcCChhHHHHHHHHH
Q 041882 180 NLISFNVMIK---GRLKKGEWEEASRVFDEMLERE-------VPPTVV-------TYNSLIGFLCRTGEMGKAKGLFEDM 242 (491)
Q Consensus 180 ~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~ 242 (491)
...+|..+.+ .+...|++.+|+++++.....+ -.-+.. .-.-+..++...|+.++|..+|...
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 1123333332 3456788999999888873321 111111 1223445667789999999999888
Q ss_pred HHcCCCCCHHH----HHHHHHHHHhcCCHhH--------------HHHHHHHHH--------------------------
Q 041882 243 IKKGTYPNAVT----YALLMEGLCFKGEYNE--------------AKKMMFDMA-------------------------- 278 (491)
Q Consensus 243 ~~~~~~~~~~~----~~~ll~~~~~~~~~~~--------------a~~~~~~~~-------------------------- 278 (491)
++.... |... .|.++. +....++.. +..+...+.
T Consensus 251 i~~~~~-D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~ 328 (652)
T KOG2376|consen 251 IKRNPA-DEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRE 328 (652)
T ss_pred HHhcCC-CchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 876432 3211 122211 111111000 000000000
Q ss_pred ---Hc-CCCCChhcHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-------
Q 041882 279 ---YR-GCKPQLVNFGVLMSDLGK--RGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLT------- 345 (491)
Q Consensus 279 ---~~-~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~------- 345 (491)
.. +..|. ..+.+++..+.+ ......+.+++....+....-...+.-.+++.....|+++.|.+++.
T Consensus 329 ~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 329 LSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred HHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 00 11122 233334333322 22366677777776665444345566677777888999999999998
Q ss_pred -HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC----HHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 346 -EMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS--RHCPR----LETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 346 -~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
.+.+.+.. +.+...++..+.+.++.+.|..++...+.. .-.+. ..++..++..-.+.|+.++|..+++++.
T Consensus 408 ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~ 485 (652)
T KOG2376|consen 408 SSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELV 485 (652)
T ss_pred hhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHH
Confidence 55544433 345556667778888877788877777652 01112 2233444445567899999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCC
Q 041882 419 KRKMRFDLKAWEGLVTDACIGDG 441 (491)
Q Consensus 419 ~~~~~~~~~~~~~ll~~~~~~~~ 441 (491)
+. ..+|..+...++.+|++.+-
T Consensus 486 k~-n~~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 486 KF-NPNDTDLLVQLVTAYARLDP 507 (652)
T ss_pred Hh-CCchHHHHHHHHHHHHhcCH
Confidence 85 35688899999998887764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-11 Score=77.00 Aligned_cols=49 Identities=47% Similarity=0.925 Sum_probs=25.5
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 041882 214 PTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLC 262 (491)
Q Consensus 214 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 262 (491)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3445555555555555555555555555555555555555555555543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-07 Score=81.62 Aligned_cols=361 Identities=13% Similarity=0.083 Sum_probs=177.8
Q ss_pred HhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 041882 50 DLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDK 129 (491)
Q Consensus 50 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 129 (491)
-.-+.|++++|+..++.+.+.. .++...+..|.-...-.|.+.+|..+.....+ ++-....++...-+.++-++
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHH
Confidence 3456799999999999888754 56666777777777778889998887765543 22333344444455566555
Q ss_pred HHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHH-HHHHhcCChHHHHHHHHHHH
Q 041882 130 AIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMI-KGRLKKGEWEEASRVFDEML 208 (491)
Q Consensus 130 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~ 208 (491)
-..+-+.+.. +.+---+|.......-.+++|++++...... .|+-...|..+ -+|.+..-++-+.++++-..
T Consensus 140 ~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 140 ILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 5555444433 2233334444444445566777777766654 23444444332 34455555666666665554
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH--------------HHHcCC------------CC-----CHHHHHHH
Q 041882 209 EREVPPTVVTYNSLIGFLCRTGEMGKAKGLFED--------------MIKKGT------------YP-----NAVTYALL 257 (491)
Q Consensus 209 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~--------------~~~~~~------------~~-----~~~~~~~l 257 (491)
+. ++-++...|.......+.=+-..|..-.+. +.+.++ -| -+..-..+
T Consensus 213 ~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL 291 (557)
T KOG3785|consen 213 RQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNL 291 (557)
T ss_pred Hh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhh
Confidence 43 222233333222222211111111111111 111000 00 01111223
Q ss_pred HHHHHhcCCHhHHHHHHHHHH--------------------------------------HcCCCCChhc-HHHHHHHHHh
Q 041882 258 MEGLCFKGEYNEAKKMMFDMA--------------------------------------YRGCKPQLVN-FGVLMSDLGK 298 (491)
Q Consensus 258 l~~~~~~~~~~~a~~~~~~~~--------------------------------------~~~~~~~~~~-~~~ll~~~~~ 298 (491)
+--|.+.++..+|..+.+++. +.+..-|... -..+..++.-
T Consensus 292 ~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred eeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 333445555555555444332 2222222111 1122222333
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHH
Q 041882 299 RGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRM-MVDGFLRVEDFEGSLK 377 (491)
Q Consensus 299 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~ 377 (491)
..++++....++.+..--...|...+ .+.++++..|++.+|+++|-.+....+ .|..+|.+ +.++|.+.+.++.|+.
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHH
Confidence 33455555555554443222233333 356666667777777777766554332 23444443 4456677777777666
Q ss_pred HHHHHHhCCCCCCHHh-HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 041882 378 VLNAMLTSRHCPRLET-FSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEG 431 (491)
Q Consensus 378 ~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 431 (491)
++-++.. +.+..+ ...+..-|.+++.+--|-+.|+.+.. ..|++..|..
T Consensus 450 ~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWeG 499 (557)
T KOG3785|consen 450 MMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWEG 499 (557)
T ss_pred HHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccCC
Confidence 5443322 222222 23334566677777777777777664 3566666643
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.6e-09 Score=96.34 Aligned_cols=238 Identities=21% Similarity=0.184 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CC-CcCHH-HHHHHHHHHHhCCChhhHHHHHHHHHHC-----CC-
Q 041882 111 ETLFISLIQHYGKAHLVDKAIEVFNRMTSF-----DC-VRTLQ-SFNSLLDILVDNDRVDDAKRMFDDADKM-----GF- 177 (491)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~- 177 (491)
..+...+...|...|+++.|+.+++...+. |. .|.+. ..+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 355556777777777777777777766543 10 12332 2334666777778888888877776543 21
Q ss_pred CC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHhC-----CC-CCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHc---C
Q 041882 178 RP-NLISFNVMIKGRLKKGEWEEASRVFDEMLER-----EV-PPTV-VTYNSLIGFLCRTGEMGKAKGLFEDMIKK---G 246 (491)
Q Consensus 178 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~ 246 (491)
.| -..+++.|..+|.+.|++++|...++...+. +. .|.+ ..++.+...|...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 11 1345666667788888887777777665432 11 1121 23455666777778888888777765532 1
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC----C---CCChhcHHHHHHHHHhcCChHHHHHHHHHHHH-
Q 041882 247 TYP----NAVTYALLMEGLCFKGEYNEAKKMMFDMAYRG----C---KPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKK- 314 (491)
Q Consensus 247 ~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~- 314 (491)
+.+ -..+++.+...|...|++++|.++++..+... . .-....++.+...|.+.+++.+|..+|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 111 24567788888888888888888888776431 1 11234566777778888888878777765432
Q ss_pred ---cCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041882 315 ---RQYK-P-DVVTYNILINYLCKEDRAAEAYKVLTEMQ 348 (491)
Q Consensus 315 ---~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 348 (491)
.|+. | ...+|..|...|...|++++|.++...+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2221 1 34578888888888888888888877665
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.6e-08 Score=88.64 Aligned_cols=229 Identities=12% Similarity=-0.033 Sum_probs=159.8
Q ss_pred hhhcCChHHHHHHHHHhhhCCC-CC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 51 LKEIRDPDEALSLFHRHHQMGS-KH--SYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLV 127 (491)
Q Consensus 51 l~~~~~~~~A~~~~~~~~~~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 127 (491)
+...+..+.++..+.+++.... .| ....|..+...+...|+++.|...|+...+.. +.+...|+.+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH
Confidence 3344677888888888875431 22 23457778888899999999999999999887 66789999999999999999
Q ss_pred HHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 128 DKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEM 207 (491)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 207 (491)
++|+..|++..+.+.. +..+|..+..++...|++++|++.|+...+.. |+..........+...++.++|...|...
T Consensus 115 ~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 115 DAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9999999999886533 57788889999999999999999999988763 44332223333345567899999999775
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC---C---CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 041882 208 LEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKG---T---YPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRG 281 (491)
Q Consensus 208 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 281 (491)
.... .++...+ .......|+...+ +.++.+.+.. . +....+|..+...+.+.|++++|...|+...+.+
T Consensus 192 ~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5432 2232222 2233345666554 3445544321 1 0123467778888888888888888888888765
Q ss_pred CCCChhcH
Q 041882 282 CKPQLVNF 289 (491)
Q Consensus 282 ~~~~~~~~ 289 (491)
+++..-+
T Consensus 267 -~~~~~e~ 273 (296)
T PRK11189 267 -VYNFVEH 273 (296)
T ss_pred -CchHHHH
Confidence 3343333
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.4e-06 Score=79.79 Aligned_cols=383 Identities=11% Similarity=0.103 Sum_probs=233.0
Q ss_pred CcchHHHhhhcCChHHHHHHHHHhhh-CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 041882 44 PIPFVNDLKEIRDPDEALSLFHRHHQ-MGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYG 122 (491)
Q Consensus 44 ~~~~~~~l~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (491)
|..++.-+..+|+...-...|++.+. ..+.-....|...+......+-.+.+..++++.++.. +..-+..+..++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L~ 180 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYLA 180 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHHH
Confidence 34566677778888888888877664 3334445578888887777888888888888887653 344666777888
Q ss_pred hcCCHHHHHHHHHHhhhCC------CCcCHHHHHHHHHHHHhCCCh---hhHHHHHHHHHHCCCCCC--HHhHHHHHHHH
Q 041882 123 KAHLVDKAIEVFNRMTSFD------CVRTLQSFNSLLDILVDNDRV---DDAKRMFDDADKMGFRPN--LISFNVMIKGR 191 (491)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~p~--~~~~~~ll~~~ 191 (491)
..+++++|-+.+..+...+ .+.+-..|+.+....+++-+. -....+++.+... -+| ...|+.|.+-|
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYY 258 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHH
Confidence 8888888888888775431 123455677666666655432 2333444444432 234 34678888889
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----------------------ChhHHHHHHHHHHHcCC--
Q 041882 192 LKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTG----------------------EMGKAKGLFEDMIKKGT-- 247 (491)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------------~~~~a~~~~~~~~~~~~-- 247 (491)
.+.|.++.|..+|++....- .+..-|..+.++|++-. +++-.+..|+.+...+.
T Consensus 259 Ir~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 99999999999998877642 23444444444444211 12233334444433211
Q ss_pred ---------CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC------hhcHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 248 ---------YPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQ------LVNFGVLMSDLGKRGKIEEAKSLLSEM 312 (491)
Q Consensus 248 ---------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~~ 312 (491)
+.+...|..-+. ...|+..+....+.+..+. +.|. ...|..+...|-..|+++.|..+|++.
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 112222322222 3345566666777776654 1221 245677888888999999999999988
Q ss_pred HHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------C------CCHHHHHHHHHHHHhcCCH
Q 041882 313 KKRQYKPD---VVTYNILINYLCKEDRAAEAYKVLTEMQIGGC-----------K------PNAATYRMMVDGFLRVEDF 372 (491)
Q Consensus 313 ~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~------~~~~~~~~li~~~~~~~~~ 372 (491)
.+-..+-- ..+|..-...-.+..+++.|+++++.....-- + .+...|...+..--..|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 87644311 23455555555677888888888877653210 1 1223344445555567888
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 041882 373 EGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFD-LKAWEGLVTDACI 438 (491)
Q Consensus 373 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~ 438 (491)
+....+++++++..+. ++.+.......+-.+.-++++.+++++=+..=--|+ ...|+..+..+.+
T Consensus 494 estk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 8888888888887543 333333444445566667777777776543311233 3567777776554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.8e-08 Score=79.91 Aligned_cols=193 Identities=16% Similarity=0.140 Sum_probs=95.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCC
Q 041882 82 LIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDR 161 (491)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 161 (491)
|.-.|.+.|++..|..-+++.+++. +.+..++..+...|.+.|..+.|.+.|++....... +..+.|.....+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCC
Confidence 3344455555555555555555554 334445555555555555555555555555444322 44455555555555555
Q ss_pred hhhHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 041882 162 VDDAKRMFDDADKMG-FRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFE 240 (491)
Q Consensus 162 ~~~a~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 240 (491)
+++|...|++..... +.--..+|..+.-+..+.|+.+.|...|++..+.... ...+.-.+.......|++-.|..+++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHH
Confidence 555555555554431 1111234444555555555555555555555554322 33344444555555555555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 041882 241 DMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMA 278 (491)
Q Consensus 241 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (491)
.....+. ++..+.-..|..--..|+.+.+.++=..+.
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5544433 444444444444445555555544444443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.3e-07 Score=78.06 Aligned_cols=267 Identities=13% Similarity=0.050 Sum_probs=146.7
Q ss_pred cCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 041882 144 RTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLI-SFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSL 222 (491)
Q Consensus 144 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 222 (491)
-|+.....+..++...|+.++|+..|++.... .|+.. ......-.+.+.|+++....+...+.... .-....|..-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 35566666666666666666666666665543 22221 11112222345566666666555555432 1133344444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCh
Q 041882 223 IGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKI 302 (491)
Q Consensus 223 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 302 (491)
+......+++..|+.+-++.++.... +...+-.-...+...++..+|.-.|+..+... +-+..+|..|+..|...|++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 44455566666666666666654222 33333333345556666666666666665543 34566677777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 041882 303 EEAKSLLSEMKKRQYKPDVVTYNILI-NYLC-KEDRAAEAYKVLTEMQIGGCKPNA-ATYRMMVDGFLRVEDFEGSLKVL 379 (491)
Q Consensus 303 ~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~ 379 (491)
.+|..+-+...+. ...+..+...+. ..+. ....-++|-+++++.... .|+. ...+.+...|...|..+.++.++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 7666655554443 112344443331 2221 122345666666655542 3443 34455556666677777777777
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 380 NAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 380 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
++.+.. .||....+.|.+.+...+.+.+|...|......
T Consensus 462 e~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 462 EKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 766663 466666677777777777777777777766643
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-07 Score=79.04 Aligned_cols=415 Identities=14% Similarity=0.090 Sum_probs=198.2
Q ss_pred CCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH-HHHHHH
Q 041882 43 EPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFI-SLIQHY 121 (491)
Q Consensus 43 ~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~ 121 (491)
..++.+..+.+..++..|++++....++. +.+......+...|-+..++..|-+.++++...- |...-|. --...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHH
Confidence 34556666666666777776666555543 3355566666666666666777777666666542 2222222 123344
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHH--HHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHH
Q 041882 122 GKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLD--ILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEE 199 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 199 (491)
-+.+.+..|+.+...|... ++...-..-+. .....+++..+..++++....| +..+.+...-...+.|+++.
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 4556666666666665542 22211111122 2223456666666666554322 23333333333446666666
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHhcCCHhHHHHHHH
Q 041882 200 ASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVT----YALLMEGLCFKGEYNEAKKMMF 275 (491)
Q Consensus 200 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~ 275 (491)
|.+-|+...+-+--.....|+..+. ..+.|+++.|+++..++++.|+.-.+.. ..-.+.+ ...|+. ..+..
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~lh~ 237 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LVLHQ 237 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HHHHH
Confidence 6666666555432223444544333 3345666666666666666655311100 0000000 000000 00000
Q ss_pred HHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041882 276 DMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKR-QYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKP 354 (491)
Q Consensus 276 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 354 (491)
. .-...+|.-...+.+.++++.|.+-+-.|.-+ ....|++|...+.-.= ..+++.+..+-+.-+...+ +-
T Consensus 238 ----S---al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-Pf 308 (459)
T KOG4340|consen 238 ----S---ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PF 308 (459)
T ss_pred ----H---HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CC
Confidence 0 00112222233445677778887777776432 2334566655443221 2344555555555555443 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHc-CCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041882 355 NAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHC-PRLETFSCLLVGLLK-GGKVDDACFVLEEMEKRKMRFDLKAWEGL 432 (491)
Q Consensus 355 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 432 (491)
...||..++-.||+..-++.|..++.+-...... .+...|+ +++++.- .-..++|.+-++.+... ..-......+-
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~-l~~kLRklAi~ 386 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGM-LTEKLRKLAIQ 386 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 5568888888888887788777776543222111 2333333 3444443 44566666665555432 00011112222
Q ss_pred HHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhhH
Q 041882 433 VTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDLF 484 (491)
Q Consensus 433 l~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 484 (491)
++. .+..+.+.++....+--+..+ .-....+...+|.|-+..+++.+++.
T Consensus 387 vQe-~r~~~dd~a~R~ai~~Yd~~L-E~YLPVlMa~AkiyW~~~Dy~~vEk~ 436 (459)
T KOG4340|consen 387 VQE-ARHNRDDEAIRKAVNEYDETL-EKYLPVLMAQAKIYWNLEDYPMVEKI 436 (459)
T ss_pred HHH-HHhcccHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccccHHHHHH
Confidence 221 222232222222111111111 11234567778888888888877765
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3e-07 Score=81.05 Aligned_cols=305 Identities=12% Similarity=0.050 Sum_probs=216.7
Q ss_pred CCHHhHHHHHHHHHh--cCChhHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHH
Q 041882 74 HSYPSYASLIYKLAR--ARDFDAVETVLGYIQD-FNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFN 150 (491)
Q Consensus 74 ~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 150 (491)
|..++...-+.+++. .++-..+...+-.+.. .-++.++.....+...+...|+.++|+..|++....++. +.....
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD 270 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMD 270 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHH
Confidence 333333344444443 3444444444443333 235778899999999999999999999999998876522 444455
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 041882 151 SLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTG 230 (491)
Q Consensus 151 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 230 (491)
...-.+...|+.+....+...+.... +-....|-.-.......++++.|+.+-++.++.+.. +...+-.-..++...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhcc
Confidence 55556667888888888887776542 123334444444556678899999999988876433 5666666667888999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHH-HHHH-hcCChHHHHHH
Q 041882 231 EMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLM-SDLG-KRGKIEEAKSL 308 (491)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~~-~~~~~~~a~~~ 308 (491)
++++|.-.|+...... +-+...|.-++.+|...|.+.+|.-+-....+. .+.+..+...+. ..+. .-..-++|..+
T Consensus 349 R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred chHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 9999999999987753 237789999999999999999988776655443 133344444331 2222 22235788888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041882 309 LSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSR 386 (491)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 386 (491)
++.....++. -....+.+...+...|..++++.++++... ..||....+.+.+.+...+.+++|++.|..++..+
T Consensus 427 ~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 427 AEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 8887775433 344567777888899999999999999876 37899999999999999999999999999998853
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-06 Score=82.48 Aligned_cols=396 Identities=12% Similarity=0.047 Sum_probs=261.2
Q ss_pred CChHHHHHH----HHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 55 RDPDEALSL----FHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKA 130 (491)
Q Consensus 55 ~~~~~A~~~----~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 130 (491)
.+..++... +.++....+.-+...|..+.-++...|+++.+.+.|+.....-+ -....|..+...|...|.-..|
T Consensus 298 e~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~A 376 (799)
T KOG4162|consen 298 ENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKA 376 (799)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHH
Confidence 445555443 23334444566888999999999999999999999999876543 3457788888889999999999
Q ss_pred HHHHHHhhhCCCCc-CHHHHHHHHHHHHh-CCChhhHHHHHHHHHHC--CC--CCCHHhHHHHHHHHHhc----------
Q 041882 131 IEVFNRMTSFDCVR-TLQSFNSLLDILVD-NDRVDDAKRMFDDADKM--GF--RPNLISFNVMIKGRLKK---------- 194 (491)
Q Consensus 131 ~~~~~~~~~~~~~~-~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~--~~--~p~~~~~~~ll~~~~~~---------- 194 (491)
..+++.-......| +...+-..-..|.+ .+..++++++-.+.... +. ......|..+.-+|...
T Consensus 377 v~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR 456 (799)
T KOG4162|consen 377 VNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSER 456 (799)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHH
Confidence 99998876543223 34444444444544 36677777777766652 11 11223333333333311
Q ss_pred -CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 041882 195 -GEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKM 273 (491)
Q Consensus 195 -~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 273 (491)
....++++.+++..+.+.. |+....-+.--|+..++.+.|.+..++..+.+..-+...|..+.-.+...+++.+|+.+
T Consensus 457 ~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 457 DALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 2245677788888776543 33333344455677889999999999999886666888999999999999999999999
Q ss_pred HHHHHHc-CCC------------------CChhcHHHHHHHHHh---------c--------------CChHHHHHHHHH
Q 041882 274 MFDMAYR-GCK------------------PQLVNFGVLMSDLGK---------R--------------GKIEEAKSLLSE 311 (491)
Q Consensus 274 ~~~~~~~-~~~------------------~~~~~~~~ll~~~~~---------~--------------~~~~~a~~~~~~ 311 (491)
.+..... |.. ....|...++..+-. . ++..++......
T Consensus 536 vd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ 615 (799)
T KOG4162|consen 536 VDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRY 615 (799)
T ss_pred HHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHH
Confidence 8876654 110 001122222222210 0 011111111111
Q ss_pred H----H----HcC---------C--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041882 312 M----K----KRQ---------Y--KPD------VVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGF 366 (491)
Q Consensus 312 ~----~----~~~---------~--~~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 366 (491)
+ . ..+ . .|+ ...|......+.+.++.++|...+.+.... .+.....|......+
T Consensus 616 ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~ 694 (799)
T KOG4162|consen 616 LSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLL 694 (799)
T ss_pred HHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHH
Confidence 0 0 001 0 111 224556667777888889998888877653 244555666666778
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcc
Q 041882 367 LRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACF--VLEEMEKRKMRFDLKAWEGLVTDACIGDGNAG 444 (491)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 444 (491)
...|.+++|.+.|......+ +.+....+++..++.+.|+..-|.. ++..+.+.+. .+...|..+...+-+.|+...
T Consensus 695 ~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHH
Confidence 88999999999999998853 2356788999999999999888877 9999998653 378899999999999999888
Q ss_pred hhHHHHHHhhh
Q 041882 445 GLVEIRDMRDY 455 (491)
Q Consensus 445 ~~~~~~~m~~~ 455 (491)
+.+-+....+.
T Consensus 773 Aaecf~aa~qL 783 (799)
T KOG4162|consen 773 AAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHhh
Confidence 88877655543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.8e-07 Score=82.08 Aligned_cols=376 Identities=12% Similarity=0.045 Sum_probs=221.0
Q ss_pred HHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 041882 49 NDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVD 128 (491)
Q Consensus 49 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 128 (491)
+.....|+++.|+..|...+... ++|...|..-..++...|++++|.+=-....+.+ |..+..|.....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHH
Confidence 34667899999999999988876 4588888888999999999999988777777765 556688999999999999999
Q ss_pred HHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhH---HHHHHHHHHC---CCCCCHHhHHHHHHHHH----------
Q 041882 129 KAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDA---KRMFDDADKM---GFRPNLISFNVMIKGRL---------- 192 (491)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a---~~~~~~~~~~---~~~p~~~~~~~ll~~~~---------- 192 (491)
+|+..|.+-.+.... +...++.+..++......... -.++..+... ........|..++...-
T Consensus 88 eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 999999998887532 566677777666211000000 0000000000 00000111111111110
Q ss_pred hcCChHHHHHHHHH-----HHhCC-------CCC----------------------ChhhHHHHHHHHHhcCChhHHHHH
Q 041882 193 KKGEWEEASRVFDE-----MLERE-------VPP----------------------TVVTYNSLIGFLCRTGEMGKAKGL 238 (491)
Q Consensus 193 ~~~~~~~a~~~~~~-----~~~~~-------~~~----------------------~~~~~~~ll~~~~~~~~~~~a~~~ 238 (491)
....+..+.-.+.. +...+ ..| -..-...+.++..+..+++.|++.
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 00001111111100 00000 000 011234566666677777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHH-------HHHHHHhcCChHHHHHHHHH
Q 041882 239 FEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGV-------LMSDLGKRGKIEEAKSLLSE 311 (491)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------ll~~~~~~~~~~~a~~~~~~ 311 (491)
+....... -+..-++....+|...|.+......-....+.|- -....|+. +..+|.+.++.+.+...|.+
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 77776654 2444455555666666666665555555444431 11111221 22344555666666666666
Q ss_pred HHHcCCCCCHHH-------------------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041882 312 MKKRQYKPDVVT-------------------------YNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGF 366 (491)
Q Consensus 312 ~~~~~~~~~~~~-------------------------~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 366 (491)
.......|+... ...-...+.+.|++..|+..|.+++... +-|...|..-.-+|
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACY 402 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence 544333332211 1112445667788999999999888765 66677888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041882 367 LRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVT 434 (491)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 434 (491)
.+.|.+..|+.-.+..++.+ ++....|..-..++....++++|.+.|++..+. .|+..-+...+.
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~ 467 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYR 467 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 89999998888888887753 233455555566666777888888888888865 345444433333
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-07 Score=84.08 Aligned_cols=218 Identities=15% Similarity=0.028 Sum_probs=120.1
Q ss_pred CCHHHHHHHHHHhhhCC---CCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 041882 125 HLVDKAIEVFNRMTSFD---CVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEAS 201 (491)
Q Consensus 125 ~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 201 (491)
+..+.++.-+.++.... .......|..+...+...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555555321 11123456666667777777777777777776653 224566777777777777777777
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 041882 202 RVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRG 281 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 281 (491)
..|+...+.... +..+|..+..++...|++++|.+.|+...+.... +. ........+...++.++|...+.......
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 777777665332 4556666677777777777777777777665322 22 11111222334556777777775544322
Q ss_pred CCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHc---CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041882 282 CKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKR---QYK---PDVVTYNILINYLCKEDRAAEAYKVLTEMQIGG 351 (491)
Q Consensus 282 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 351 (491)
.++... ..+. ....|+...+ ..+..+.+. .+. .....|..+...+.+.|++++|...|++..+.+
T Consensus 196 -~~~~~~-~~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQWG-WNIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -CccccH-HHHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 222211 1222 2223444333 233333321 000 123456677777777777777777777776643
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-06 Score=82.31 Aligned_cols=197 Identities=13% Similarity=0.016 Sum_probs=107.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNI-RCKE-TLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDI 155 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 155 (491)
.|..+...+...|+.+.+.+.+....+... ..+. .........+...|++++|.+.+++.....+ .+...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-hHH
Confidence 445555555556666666665555444321 1121 2222233344566777778777777766532 23334332 222
Q ss_pred HHh----CCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 041882 156 LVD----NDRVDDAKRMFDDADKMGFRPN-LISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTG 230 (491)
Q Consensus 156 ~~~----~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 230 (491)
+.. .+..+.+.+.+... ....|+ ......+...+...|++++|.+.+++..+.... +...+..+..++...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcC
Confidence 222 23344444444331 111222 223334455667777777777777777776432 4556677777777777
Q ss_pred ChhHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 041882 231 EMGKAKGLFEDMIKKGT-YPNA--VTYALLMEGLCFKGEYNEAKKMMFDMAY 279 (491)
Q Consensus 231 ~~~~a~~~~~~~~~~~~-~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (491)
++++|..++++...... .++. ..|..+...+...|++++|..+++....
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 77777777777665422 1222 2344566667777777777777777643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.6e-06 Score=78.77 Aligned_cols=401 Identities=14% Similarity=0.118 Sum_probs=255.7
Q ss_pred CCCCCCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 041882 39 RKTKEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLI 118 (491)
Q Consensus 39 ~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 118 (491)
.+...|..+--......++++|++.|..+...+ +.|...+..+.-.-++.|+++..........+.. +.....|..+.
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~A 150 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFA 150 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHH
Confidence 344556666666677889999999999999865 6778888888888889999999999888888765 44566788888
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCC-CCcCHHHHHHHH------HHHHhCCChhhHHHHHHHHHHCCCCCCHHhH-HHHHHH
Q 041882 119 QHYGKAHLVDKAIEVFNRMTSFD-CVRTLQSFNSLL------DILVDNDRVDDAKRMFDDADKMGFRPNLISF-NVMIKG 190 (491)
Q Consensus 119 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll------~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~ll~~ 190 (491)
.++--.|+...|..++++..+.. -.|+...+.... ....+.|..+.|++.+..-... ..|...+ ..-...
T Consensus 151 vs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l 228 (700)
T KOG1156|consen 151 VAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADL 228 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHH
Confidence 88888999999999998886653 235655554433 4456678888888887765443 1233333 344566
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhH
Q 041882 191 RLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAK-GLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNE 269 (491)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 269 (491)
+.+.+++++|..++..+...... +...|..+..++.+..+..++. .+|....+.-.. ....-..=+.......-.+.
T Consensus 229 ~~kl~~lEeA~~~y~~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~ 306 (700)
T KOG1156|consen 229 LMKLGQLEEAVKVYRRLLERNPD-NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEI 306 (700)
T ss_pred HHHHhhHHhHHHHHHHHHhhCch-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHH
Confidence 78899999999999999987422 4444444555554333333333 666665543111 11000111111112222344
Q ss_pred HHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHH----cC----------CCCCHHHH--HHHHHHHHh
Q 041882 270 AKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKK----RQ----------YKPDVVTY--NILINYLCK 333 (491)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~~--~~li~~~~~ 333 (491)
.-.++..+.+.|+++- +..+...|-.-...+-.+++.-.+.. .| -+|....| -.++..|-+
T Consensus 307 vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~ 383 (700)
T KOG1156|consen 307 VDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDK 383 (700)
T ss_pred HHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHH
Confidence 5566677777776543 34444444332222211222111111 11 14555444 456777888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHH
Q 041882 334 EDRAAEAYKVLTEMQIGGCKPNA-ATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACF 412 (491)
Q Consensus 334 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 412 (491)
.|+++.|..+++....+ .|+. ..|..-.+.+...|+++.|..++++..+.+ .+|..+-.--+.-..++++.++|.+
T Consensus 384 ~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~ 460 (700)
T KOG1156|consen 384 LGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEE 460 (700)
T ss_pred cccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHH
Confidence 99999999999998865 4554 355555678888999999999999998864 3666655567777889999999999
Q ss_pred HHHHHHHCCCC--CC----HHHHHHH--HHHHHhcCCCcchhHHHHH
Q 041882 413 VLEEMEKRKMR--FD----LKAWEGL--VTDACIGDGNAGGLVEIRD 451 (491)
Q Consensus 413 ~~~~~~~~~~~--~~----~~~~~~l--l~~~~~~~~~~~~~~~~~~ 451 (491)
+...+.+.|.. -+ .-.|-.+ ..+|.+.+++..|++.+..
T Consensus 461 ~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 461 VLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred HHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 99999887741 01 1123222 2245555566556655543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.9e-06 Score=76.49 Aligned_cols=379 Identities=13% Similarity=0.164 Sum_probs=214.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCCh
Q 041882 83 IYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRV 162 (491)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 162 (491)
+..+.+.+++++|.+....+...+ +.+...+.+-+.+..+.+++++|+.+.+.-... ..+...+-.-..+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 556678899999999999999887 777888888889999999999999665543221 11111112224455678999
Q ss_pred hhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---------------------------C
Q 041882 163 DDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPP---------------------------T 215 (491)
Q Consensus 163 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~ 215 (491)
++|+..++-+. +-|..+...-...+.+.+++++|+.+|+.+.+.+..- .
T Consensus 96 Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 96 DEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP 171 (652)
T ss_pred HHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence 99999988322 1234467777788999999999999999996653210 1
Q ss_pred hhhHHHH---HHHHHhcCChhHHHHHHHHHHHc-------CCCCCHH-------HHHHHHHHHHhcCCHhHHHHHHHHHH
Q 041882 216 VVTYNSL---IGFLCRTGEMGKAKGLFEDMIKK-------GTYPNAV-------TYALLMEGLCFKGEYNEAKKMMFDMA 278 (491)
Q Consensus 216 ~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (491)
..+|..+ .-.+...|++.+|+++++...+. +-.-+.. .-..+.-.+-..|+..+|..++...+
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 1123222 23445678888888888877322 1111111 11223445567788888888888887
Q ss_pred HcCCCCChhcH----HHHHHHHHhc---------------------------------------------CChHHHHHHH
Q 041882 279 YRGCKPQLVNF----GVLMSDLGKR---------------------------------------------GKIEEAKSLL 309 (491)
Q Consensus 279 ~~~~~~~~~~~----~~ll~~~~~~---------------------------------------------~~~~~a~~~~ 309 (491)
+.. .+|.... |.|+.+-... +..+.+.++-
T Consensus 252 ~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~ 330 (652)
T KOG2376|consen 252 KRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELS 330 (652)
T ss_pred Hhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 764 2332111 1111100000 0000000000
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-------
Q 041882 310 SEMKKRQYKPDVVTYNILINYLC--KEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLN------- 380 (491)
Q Consensus 310 ~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~------- 380 (491)
.... +..|. ..+..++.... +...+..+.+++...-+..-.-...+.-.+++.....|+++.|.+++.
T Consensus 331 a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 331 ASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred HhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 0000 11111 22233333222 122355666666665543211123344455666777888888888888
Q ss_pred -HHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCCcchhHHHHHHh
Q 041882 381 -AMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKR--KMRFD----LKAWEGLVTDACIGDGNAGGLVEIRDMR 453 (491)
Q Consensus 381 -~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~~ll~~~~~~~~~~~~~~~~~~m~ 453 (491)
.+.+.+. .+.+...+...+.+.++.+.|..++.+..+- .-.+. ..+|.-+..--.+.|...++...++++.
T Consensus 408 ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~ 485 (652)
T KOG2376|consen 408 SSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELV 485 (652)
T ss_pred hhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHH
Confidence 4444332 3344555666667766666666666655421 00111 2233333333345567777777778777
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCC
Q 041882 454 DYSMAISSVMNVVDLLWTYLGMG 476 (491)
Q Consensus 454 ~~~~~~~~~~~~~~l~~~~~~~g 476 (491)
... |.+...+..+.-.|....
T Consensus 486 k~n--~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 486 KFN--PNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HhC--CchHHHHHHHHHHHHhcC
Confidence 765 777777777777766554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-07 Score=75.97 Aligned_cols=195 Identities=15% Similarity=0.097 Sum_probs=99.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 041882 186 VMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKG 265 (491)
Q Consensus 186 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 265 (491)
.|.-.|...|+...|.+-+++.++.+.. +..+|..+...|.+.|+.+.|.+.|++..+.... +..+.|..-.-+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCC
Confidence 3444455555555555555555554322 4445555555555555555555555555544222 3444455555555555
Q ss_pred CHhHHHHHHHHHHHcC-CCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041882 266 EYNEAKKMMFDMAYRG-CKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVL 344 (491)
Q Consensus 266 ~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 344 (491)
++++|...|+...... ......+|..+.-+..+.|+.+.|...|++..+.... .+...-.+.......|++..|..++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHH
Confidence 5555555555554431 1111234444444455555555555555555554333 3334444555555555666665555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 345 TEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
+.....+ .++.......|+.-...|+.+.+-++=.++..
T Consensus 197 ~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 197 ERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5555443 25555555555555555555555555444444
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-06 Score=82.35 Aligned_cols=306 Identities=12% Similarity=-0.024 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CcC-HHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHH
Q 041882 111 ETLFISLIQHYGKAHLVDKAIEVFNRMTSFDC-VRT-LQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMI 188 (491)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll 188 (491)
...+..+...+...|+.+.+...+.+...... ..+ ..........+...|++++|.+++++..+.. +.|...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 44566666667777878877766666544321 112 2223333445667889999999999887763 223333332 1
Q ss_pred HHHH----hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 041882 189 KGRL----KKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFK 264 (491)
Q Consensus 189 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 264 (491)
..+. ..+..+.+.+.+.... ...+........+...+...|++++|...+++..+.... +...+..+...+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHc
Confidence 1222 2345555555554411 112222334455667788899999999999999887433 566777888888899
Q ss_pred CCHhHHHHHHHHHHHcCC-CCCh--hcHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHhcCCH
Q 041882 265 GEYNEAKKMMFDMAYRGC-KPQL--VNFGVLMSDLGKRGKIEEAKSLLSEMKKRQY-KPDVVTY-N--ILINYLCKEDRA 337 (491)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~-~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~~~~ 337 (491)
|++++|...+........ .++. ..+..+...+...|++++|..++++...... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 999999999988776532 1222 2344677788889999999999988764432 1111111 1 222223333432
Q ss_pred HHHHHH--HHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--------CCHHhHHHHHHHHHcCC
Q 041882 338 AEAYKV--LTEMQIGGC--KPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHC--------PRLETFSCLLVGLLKGG 405 (491)
Q Consensus 338 ~~a~~~--~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g 405 (491)
..+.+. +........ ............++...|+.+.|...++.+...... ...........++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 222222 111111110 111122224566777888888888888887663211 01222233334456788
Q ss_pred CHHHHHHHHHHHHHC
Q 041882 406 KVDDACFVLEEMEKR 420 (491)
Q Consensus 406 ~~~~a~~~~~~~~~~ 420 (491)
++++|.+.+......
T Consensus 322 ~~~~A~~~L~~al~~ 336 (355)
T cd05804 322 NYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888888877653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-07 Score=89.95 Aligned_cols=426 Identities=12% Similarity=0.043 Sum_probs=230.1
Q ss_pred CChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041882 55 RDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVF 134 (491)
Q Consensus 55 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 134 (491)
.+...|+..|-+..+..... ...|..|...|....|...|.+.|+..-+.+ .-+......+...|++..+++.|..+.
T Consensus 472 K~~~~al~ali~alrld~~~-apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSL-APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 44666666666555544222 3478888888888888888999998888876 556777888888999999999888874
Q ss_pred HHhhhCCC-CcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 041882 135 NRMTSFDC-VRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVP 213 (491)
Q Consensus 135 ~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 213 (491)
-..-+... ..-...|....-.|.+.++...++.-|+...+..+ -|...|..+..+|..+|.+..|.++|.+.... .
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 33322110 11223455555666677778888888877776542 26677788888888888888888888776654 2
Q ss_pred CChhhHHH--HHHHHHhcCChhHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH-------H
Q 041882 214 PTVVTYNS--LIGFLCRTGEMGKAKGLFEDMIKK------GTYPNAVTYALLMEGLCFKGEYNEAKKMMFDM-------A 278 (491)
Q Consensus 214 ~~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-------~ 278 (491)
|+. .|.. ....-+..|.+.+|+..+...... +..--..++..+...+...|-...+.++++.- .
T Consensus 627 P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 627 PLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 222 2211 222345667777777776665432 00001111211111111111111111111111 1
Q ss_pred HcC--------------------CCCC------------------------------------------hhcHHHHHHHH
Q 041882 279 YRG--------------------CKPQ------------------------------------------LVNFGVLMSDL 296 (491)
Q Consensus 279 ~~~--------------------~~~~------------------------------------------~~~~~~ll~~~ 296 (491)
... +.|+ ..+|..+...|
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINY 785 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHH
Confidence 110 0111 11111111111
Q ss_pred Hh----c----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041882 297 GK----R----GKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLR 368 (491)
Q Consensus 297 ~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 368 (491)
.+ . .+...|...+...+..... +..+||.|.-. ...|++.-+.-.|-+-.... +.+..+|..+.-.+..
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEe
Confidence 11 0 0111233333333322111 33344443322 33344444444333333221 3344455555555666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHH--HH--HCCCCCCHHHHHHHHHHHHhcCCCcc
Q 041882 369 VEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEE--ME--KRKMRFDLKAWEGLVTDACIGDGNAG 444 (491)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--~~--~~~~~~~~~~~~~ll~~~~~~~~~~~ 444 (491)
..+++.|...|....... +.+...|..........|+.-++..+|.. .. ..|--++...|-+...-....|+.++
T Consensus 863 n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~ 941 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEE 941 (1238)
T ss_pred cccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHH
Confidence 778888888888777642 23455565555555667888888887776 21 33445666666666555566666666
Q ss_pred hhHHHHHHhhhhhh--------hhhhHHHHHHHHHhcCCCcchhhhhHhhhhcC
Q 041882 445 GLVEIRDMRDYSMA--------ISSVMNVVDLLWTYLGMGTCVVIDLFQKREMG 490 (491)
Q Consensus 445 ~~~~~~~m~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~~~~~~k~~~~ 490 (491)
-+...++.....+. |++-..+.-.+...-.++.+.++.....|.+|
T Consensus 942 ~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rlig 995 (1238)
T KOG1127|consen 942 SINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIG 995 (1238)
T ss_pred HHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 55555444332222 56656666666666666677777766666655
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.4e-06 Score=72.22 Aligned_cols=151 Identities=15% Similarity=0.189 Sum_probs=108.8
Q ss_pred hhhcCChHHHHHHHHHhhhCCCCCCHHhHHH-HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH----HHHhcC
Q 041882 51 LKEIRDPDEALSLFHRHHQMGSKHSYPSYAS-LIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQ----HYGKAH 125 (491)
Q Consensus 51 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~ 125 (491)
+-+..++..|-..++++... .|...-|.. -...+-+.+.+..|+.+...|... ....+..+. ..-..+
T Consensus 54 YY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~ 126 (459)
T KOG4340|consen 54 YYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEG 126 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccc
Confidence 44567888999999988774 344444432 245667889999999999988764 222222222 223568
Q ss_pred CHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 041882 126 LVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM-GFRPNLISFNVMIKGRLKKGEWEEASRVF 204 (491)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 204 (491)
++..+..+.++....| +..+.+...-...+.|+++.|++-|....+. |+. ....|+..+ +..+.++++.|++..
T Consensus 127 Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~i 201 (459)
T KOG4340|consen 127 DLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHI 201 (459)
T ss_pred cCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHH
Confidence 8999999999887543 5555666666677899999999999998876 555 456787655 555778999999999
Q ss_pred HHHHhCCCC
Q 041882 205 DEMLEREVP 213 (491)
Q Consensus 205 ~~~~~~~~~ 213 (491)
.+++++|++
T Consensus 202 SEIieRG~r 210 (459)
T KOG4340|consen 202 SEIIERGIR 210 (459)
T ss_pred HHHHHhhhh
Confidence 999998764
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.8e-06 Score=88.82 Aligned_cols=337 Identities=14% Similarity=0.055 Sum_probs=211.2
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC------CcC--HHHHHHHHHHH
Q 041882 85 KLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDC------VRT--LQSFNSLLDIL 156 (491)
Q Consensus 85 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~ll~~~ 156 (491)
.+...|++..+..+++.+.......++.........+...|++++|...+......-. .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777766553221122233334455556778999999998887644210 111 12223334556
Q ss_pred HhCCChhhHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHH
Q 041882 157 VDNDRVDDAKRMFDDADKMGFRPNL----ISFNVMIKGRLKKGEWEEASRVFDEMLER----EV-PPTVVTYNSLIGFLC 227 (491)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~ 227 (491)
...|+++.|...+++....-...+. ...+.+...+...|++++|...+++.... |. .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999988763111121 23455566677899999999999887643 11 111234556677788
Q ss_pred hcCChhHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC--CCC--ChhcHHHHHHHH
Q 041882 228 RTGEMGKAKGLFEDMIKK----GTY--P-NAVTYALLMEGLCFKGEYNEAKKMMFDMAYRG--CKP--QLVNFGVLMSDL 296 (491)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~ll~~~ 296 (491)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998887653 221 1 22334455566777899999999988775531 112 123344456677
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHH
Q 041882 297 GKRGKIEEAKSLLSEMKKRQYKP-DVVTY-----NILINYLCKEDRAAEAYKVLTEMQIGGCKPNA---ATYRMMVDGFL 367 (491)
Q Consensus 297 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~ 367 (491)
...|+.+.|...+.......... ....+ ...+..+...|+.+.|...+............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999988875421110 11111 11224445678999999988775542211111 11345666788
Q ss_pred hcCCHHHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 041882 368 RVEDFEGSLKVLNAMLTS----RHCP-RLETFSCLLVGLLKGGKVDDACFVLEEMEKRK 421 (491)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 421 (491)
..|++++|...++++... |... ...+...+..++.+.|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999988763 3222 23456667788899999999999999988653
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-05 Score=72.65 Aligned_cols=408 Identities=12% Similarity=0.115 Sum_probs=218.2
Q ss_pred CCCCCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041882 40 KTKEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQ 119 (491)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 119 (491)
...+|..+++.+..+ -.+++...++++..- .+-++..|..-+..-...++++....+|.++...- .+...|...+.
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 335566677766665 888888888887753 34556677778888888888888888888877653 34566665555
Q ss_pred HHHhc-CCHHHH----HHHHHHh-hhCCCCc-CHHHHHHHHHHH---------HhCCChhhHHHHHHHHHHCCCCCCHHh
Q 041882 120 HYGKA-HLVDKA----IEVFNRM-TSFDCVR-TLQSFNSLLDIL---------VDNDRVDDAKRMFDDADKMGFRPNLIS 183 (491)
Q Consensus 120 ~~~~~-~~~~~a----~~~~~~~-~~~~~~~-~~~~~~~ll~~~---------~~~~~~~~a~~~~~~~~~~~~~p~~~~ 183 (491)
.-.+. ++...+ .+.|+-. .+.|..+ +-..|+..+.-+ ..+.+++...++|.++....+.-=...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 43332 222221 1222221 2223222 334455554433 233456666777777665422111112
Q ss_pred H------HHHHHH-------HHhcCChHHHHHHHHHHHh--CCCCCChhh---------------HHHHHHHHHhcCC--
Q 041882 184 F------NVMIKG-------RLKKGEWEEASRVFDEMLE--REVPPTVVT---------------YNSLIGFLCRTGE-- 231 (491)
Q Consensus 184 ~------~~ll~~-------~~~~~~~~~a~~~~~~~~~--~~~~~~~~~---------------~~~ll~~~~~~~~-- 231 (491)
| ..=++. --+...+..|.++++++.. +|...+..+ |..+|..=-.++-
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 2 111111 1123345666767666543 232222111 3333332111110
Q ss_pred ------hhHHHHHHHHHHH-cCCCCCHHH-HHHHH----HHHHhcCC-------HhHHHHHHHHHHHcCCCCChhcHHHH
Q 041882 232 ------MGKAKGLFEDMIK-KGTYPNAVT-YALLM----EGLCFKGE-------YNEAKKMMFDMAYRGCKPQLVNFGVL 292 (491)
Q Consensus 232 ------~~~a~~~~~~~~~-~~~~~~~~~-~~~ll----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (491)
-....-++++... .+..|+... +...+ +.+...|+ .+++..+++..+..-..-+..+|..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111222222221 122222211 11111 11222222 34555555555543323333344333
Q ss_pred HHHHHhcC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 041882 293 MSDLGKRG---KIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKP-NAATYRMMVDGFLR 368 (491)
Q Consensus 293 l~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~ 368 (491)
...--..- ..+....+++++...-..--..+|..++....+......|..+|.++.+.+..+ .....++++.-++
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c- 413 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC- 413 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-
Confidence 32221112 255566666666554222233457777777778888888888888888876666 5556667776555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCCcchh
Q 041882 369 VEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFD--LKAWEGLVTDACIGDGNAGGL 446 (491)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~~~ 446 (491)
.++.+-|.++|+--++. +..+..--...++.+...|+-..|..+|++....++.|| ...|..+|.-=..-|+....+
T Consensus 414 skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 414 SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 47888888888877665 223344446677778888888888888888887766555 367888888656667666666
Q ss_pred HHHHHHh
Q 041882 447 VEIRDMR 453 (491)
Q Consensus 447 ~~~~~m~ 453 (491)
++-+++.
T Consensus 493 ~lekR~~ 499 (656)
T KOG1914|consen 493 KLEKRRF 499 (656)
T ss_pred HHHHHHH
Confidence 5555544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-05 Score=78.61 Aligned_cols=394 Identities=15% Similarity=0.198 Sum_probs=223.2
Q ss_pred chHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhH----------HHHHHHHHHhcCC--------
Q 041882 46 PFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDA----------VETVLGYIQDFNI-------- 107 (491)
Q Consensus 46 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----------a~~~~~~~~~~~~-------- 107 (491)
.++...-+.++..--+.+++...+.| ..++.+++.+...|...++-.+ ...+=+...+++.
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeec
Confidence 35555566777888888888888888 5677889998888776543322 2222222222210
Q ss_pred --CCC---------HHHHHHHHHHHHhcCCHHHHH-----------HHHHHhhhCCCC--cCHHHHHHHHHHHHhCCChh
Q 041882 108 --RCK---------ETLFISLIQHYGKAHLVDKAI-----------EVFNRMTSFDCV--RTLQSFNSLLDILVDNDRVD 163 (491)
Q Consensus 108 --~~~---------~~~~~~l~~~~~~~~~~~~a~-----------~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~ 163 (491)
..| ...|....+...+..+.+--. ++.++....+++ .|+......+.++...+-+.
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence 112 233445555555555543322 344555443322 36667777888888888889
Q ss_pred hHHHHHHHHHHCC--CCCCHHhHHHHHHHHHhc---------------------------CChHHHHHHHHHHHhCCCCC
Q 041882 164 DAKRMFDDADKMG--FRPNLISFNVMIKGRLKK---------------------------GEWEEASRVFDEMLEREVPP 214 (491)
Q Consensus 164 ~a~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~---------------------------~~~~~a~~~~~~~~~~~~~~ 214 (491)
+.+++++++.-.+ +.-+...-|.|+-...+. +-+++|..+|+..--
T Consensus 1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~----- 1076 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDM----- 1076 (1666)
T ss_pred HHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcc-----
Confidence 9999988876431 111222223333333332 233344444433211
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHH
Q 041882 215 TVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMS 294 (491)
Q Consensus 215 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 294 (491)
+....+.|+. ..+..+.|.++-++. -.+..|+.+.++-.+.|...+|++-|-+ ..|+..|.-+++
T Consensus 1077 n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~ 1141 (1666)
T KOG0985|consen 1077 NVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVID 1141 (1666)
T ss_pred cHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHH
Confidence 2222222222 123334443333332 1456788888888888888888766543 245667888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 041882 295 DLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEG 374 (491)
Q Consensus 295 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 374 (491)
...+.|.+++..+++...++..-.|... +.|+-+|++.++..+..+++. .||......+..-|...+.++.
T Consensus 1142 ~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~a 1212 (1666)
T KOG0985|consen 1142 VASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEA 1212 (1666)
T ss_pred HHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHH
Confidence 8888999988888888777765544433 567888888888877665542 5777777777788888888877
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhh
Q 041882 375 SLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRD 454 (491)
Q Consensus 375 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~ 454 (491)
|.-+|.. ...|..|...+...|++..|...-++.. +..+|..+-.+ |..++ .+ .+-.|-.
T Consensus 1213 Akl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~Vcfa-Cvd~~---EF-rlAQiCG 1272 (1666)
T KOG0985|consen 1213 AKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFA-CVDKE---EF-RLAQICG 1272 (1666)
T ss_pred HHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHH-Hhchh---hh-hHHHhcC
Confidence 7766653 3346666666777777777766554443 34556555443 22211 11 1112222
Q ss_pred hhhhhhhhHHHHHHHHHhcCCCcchhhhhHhhhhcC
Q 041882 455 YSMAISSVMNVVDLLWTYLGMGTCVVIDLFQKREMG 490 (491)
Q Consensus 455 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~~~~ 490 (491)
..+ .-....+..+...|-..|-++++-.+....+|
T Consensus 1273 L~i-ivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG 1307 (1666)
T KOG0985|consen 1273 LNI-IVHADELEELIEYYQDRGYFEELISLLEAGLG 1307 (1666)
T ss_pred ceE-EEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc
Confidence 222 11234455555555555555555544444333
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.9e-06 Score=70.29 Aligned_cols=301 Identities=13% Similarity=0.069 Sum_probs=200.0
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHH-HHHHHH
Q 041882 75 SYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQ-SFNSLL 153 (491)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll 153 (491)
+..-.--+...+...|++..|+.-|....+.+ +.+-.++..-...|...|+...|+.=|.++.+. +||-. +-..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 33344556677778888888888888877654 333344444556677788888888888887775 45542 223344
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHH----h------------HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh
Q 041882 154 DILVDNDRVDDAKRMFDDADKMGFRPNLI----S------------FNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVV 217 (491)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 217 (491)
..+.+.|.++.|..-|+.++... |+.. . ....+..+...|+...|+.....+.+.. +-|..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence 56778888888888888887763 2211 1 1223345566788888888888888763 34777
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHH----HH-
Q 041882 218 TYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFG----VL- 292 (491)
Q Consensus 218 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l- 292 (491)
.+..-..+|...|++..|+.=++...+..-. ++.++--+-..+...|+...++...++.++. .||...+- .+
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLK 267 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHH
Confidence 8888888888888888888877777665333 4555556667777888888888888887766 45533211 11
Q ss_pred --------HHHHHhcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHH
Q 041882 293 --------MSDLGKRGKIEEAKSLLSEMKKRQYKPDVVT---YNILINYLCKEDRAAEAYKVLTEMQIGGCKPN-AATYR 360 (491)
Q Consensus 293 --------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 360 (491)
+......+++.++.+-.+...+..+...... +..+-.++...+++.+|++...+.++. .|+ ..++.
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~ 345 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHH
Confidence 1223345667777777777766644422222 334445556677888888888887763 444 66777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041882 361 MMVDGFLRVEDFEGSLKVLNAMLTSR 386 (491)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~~~~~~ 386 (491)
--..+|.-...++.|+.-|+.+.+.+
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 77778887788888888888887753
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.5e-08 Score=85.25 Aligned_cols=250 Identities=13% Similarity=0.082 Sum_probs=109.9
Q ss_pred HHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 041882 49 NDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVD 128 (491)
Q Consensus 49 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 128 (491)
+..--.|++..++.-.+ ........+......+.+++...|+++.+ +..+.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 33444566666665444 22221122233344455566666655432 23333322 344444444443333333444
Q ss_pred HHHHHHHHhhhCCCCc-CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 129 KAIEVFNRMTSFDCVR-TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEM 207 (491)
Q Consensus 129 ~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 207 (491)
.++.-+++........ +.........++...|++++|++++... .+.......+.++.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444433222121 2222222223344456666666555431 23444555556666666666666666666
Q ss_pred HhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 041882 208 LEREVPPTVVTYNSLIGFLCR----TGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCK 283 (491)
Q Consensus 208 ~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (491)
.+.+ .| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+....+ +
T Consensus 158 ~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred HhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 5542 12 222223332221 23456666666665443 34455555555556666666666666655554433 2
Q ss_pred CChhcHHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 041882 284 PQLVNFGVLMSDLGKRGKI-EEAKSLLSEMKK 314 (491)
Q Consensus 284 ~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~ 314 (491)
-+..+...++.+....|+. +.+.+.+.++..
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 3344444444444444544 444455555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-07 Score=83.63 Aligned_cols=149 Identities=16% Similarity=0.091 Sum_probs=65.4
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHH----hcC
Q 041882 225 FLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLG----KRG 300 (491)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~~ 300 (491)
.+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..++. ..+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCch
Confidence 334445555555544331 133444444555555555555555555554331 12 22222222222 122
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 041882 301 KIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDF-EGSLKVL 379 (491)
Q Consensus 301 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~ 379 (491)
.+.+|..+|+++... ..+++.+.+.+..+....|++++|.+++.+..+.+ +-++.++..++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 355555555554433 33355555555555555555555555555544332 22334444444444444444 4444455
Q ss_pred HHHHh
Q 041882 380 NAMLT 384 (491)
Q Consensus 380 ~~~~~ 384 (491)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 55444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-05 Score=76.52 Aligned_cols=378 Identities=11% Similarity=0.080 Sum_probs=212.7
Q ss_pred hhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC--------CCCCHHHHHHHHHHHHh
Q 041882 52 KEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFN--------IRCKETLFISLIQHYGK 123 (491)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~ 123 (491)
.-.|+.+.|.+-.+.+.. ...|..+.+.|.+.++++-|.-.+..|.... ...+...-.........
T Consensus 739 vtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAie 812 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIE 812 (1416)
T ss_pred EEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHH
Confidence 346888888887765443 3589999999999999888887776665321 11111222233334467
Q ss_pred cCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHH
Q 041882 124 AHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRV 203 (491)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 203 (491)
.|.+++|+.+|++.+.. ..|=..|-..|.|++|.++-+.-.+..+ ..||.....-+-..++.+.|++.
T Consensus 813 LgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHH
Confidence 78999999999887753 2344556667999999888765333222 24555566666677788888887
Q ss_pred HHHHHhC----------C---------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 041882 204 FDEMLER----------E---------VPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFK 264 (491)
Q Consensus 204 ~~~~~~~----------~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 264 (491)
|++.... . -..|...|.-.....-..|+.+.|+.+|....+ |-.+++..|-.
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQ 951 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeec
Confidence 7653211 0 011223333333334445556666666555432 33445555666
Q ss_pred CCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCC
Q 041882 265 GEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQ--------YKPDVVTYNILINYLCKEDR 336 (491)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~~~ 336 (491)
|+.++|.++-++ .-|....-.+.+.|...|++.+|..+|.+..... -..+...+|..+ .....+
T Consensus 952 Gk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal--~s~~~d 1023 (1416)
T KOG3617|consen 952 GKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLAL--MSGGSD 1023 (1416)
T ss_pred cCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh--hcCchh
Confidence 666666665443 2345556677788888888888888877654310 000111122111 011122
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCC--CCCHHhHHHHHHHHHcCCC
Q 041882 337 AAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLN--------AMLTSRH--CPRLETFSCLLVGLLKGGK 406 (491)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--------~~~~~~~--~~~~~~~~~l~~~~~~~g~ 406 (491)
.-.|-++|++. |.. +...+..|-+.|.+.+|+++-- +++..++ ..|+...+.-.+.++...+
T Consensus 1024 ~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~q 1095 (1416)
T KOG3617|consen 1024 LVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQ 1095 (1416)
T ss_pred HHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHH
Confidence 33333444432 111 1223445666677666665421 1222222 2467777777888888899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhh-hh---hhhhHHHHHHHHHhcCCCcchhhh
Q 041882 407 VDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYS-MA---ISSVMNVVDLLWTYLGMGTCVVID 482 (491)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~-~~---~~~~~~~~~l~~~~~~~g~~~~~~ 482 (491)
+++|..++....+ |...++ +|+..+..-.-+..+.|--.+ -. .+....+..++....++|.|-.+.
T Consensus 1096 yekAV~lL~~ar~---------~~~Alq-lC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~At 1165 (1416)
T KOG3617|consen 1096 YEKAVNLLCLARE---------FSGALQ-LCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAAT 1165 (1416)
T ss_pred HHHHHHHHHHHHH---------HHHHHH-HHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHH
Confidence 9999988876654 344454 466555433333333333111 11 234566777788888888766543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.1e-05 Score=83.33 Aligned_cols=332 Identities=13% Similarity=0.032 Sum_probs=181.8
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC------CCC--hhhHHHHHHHHH
Q 041882 156 LVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREV------PPT--VVTYNSLIGFLC 227 (491)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~ll~~~~ 227 (491)
....|+++.+..++..+.......+..........+...|+++++..++....+.-- .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566666666655542111111222223334445567888888888877654210 011 112222334556
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC---CCC--hhcHHHHHHHHHh
Q 041882 228 RTGEMGKAKGLFEDMIKKGTYPNA----VTYALLMEGLCFKGEYNEAKKMMFDMAYRGC---KPQ--LVNFGVLMSDLGK 298 (491)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~ll~~~~~ 298 (491)
..|++++|...++.....-...+. ...+.+...+...|+++.|...+.+.....- .+. ...+..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 788888888888887653111121 2334455566778888888888877664311 111 2234455566777
Q ss_pred cCChHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHH
Q 041882 299 RGKIEEAKSLLSEMKKR----QYK--P-DVVTYNILINYLCKEDRAAEAYKVLTEMQIG--GCKPN--AATYRMMVDGFL 367 (491)
Q Consensus 299 ~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~li~~~~ 367 (491)
.|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+. ...+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 88888888887766542 211 1 1223444555666678888888888776542 11121 223344455666
Q ss_pred hcCCHHHHHHHHHHHHhC--CCCCCHH--hH--HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh
Q 041882 368 RVEDFEGSLKVLNAMLTS--RHCPRLE--TF--SCLLVGLLKGGKVDDACFVLEEMEKRKMRFD---LKAWEGLVTDACI 438 (491)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~--~~~~~~~--~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~ 438 (491)
..|+++.|.+.++.+... ....... .. ...+..+...|+.+.|..++........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 788888888888777542 1111110 00 1122344557888888888766553211111 1113345555667
Q ss_pred cCCCcchhHHHHHHhhh----hhhhhhhHHHHHHHHHhcCCCcchhhhhHhhh
Q 041882 439 GDGNAGGLVEIRDMRDY----SMAISSVMNVVDLLWTYLGMGTCVVIDLFQKR 487 (491)
Q Consensus 439 ~~~~~~~~~~~~~m~~~----~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~ 487 (491)
.|+..++...+.+.... +........+..++..+.+.|+.+++.....+
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777777665543 22233445667777888888887777665443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-06 Score=87.44 Aligned_cols=232 Identities=15% Similarity=0.139 Sum_probs=184.7
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhc
Q 041882 213 PPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK-GTYP---NAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVN 288 (491)
Q Consensus 213 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 288 (491)
+-+...|-..|....+.++.++|.++.++.+.. ++.- -...|.++++.-..-|.-+...++|+++.+. ......
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 346778888899999999999999999998864 1211 1235667777666777888899999998876 334567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHH
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPN---AATYRMMVDG 365 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~ 365 (491)
|..|...|.+.+.+++|.++++.|.+.-- -....|...+..+.+.++-+.|..++.+.+.. -|. .......++.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 88999999999999999999999988632 47789999999999999999999999998874 343 2344455566
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCCc
Q 041882 366 FLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDL--KAWEGLVTDACIGDGNA 443 (491)
Q Consensus 366 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~ 443 (491)
-.+.|+.+++..+|+..+... +.-...|+.+++.-.++|+.+.++.+|+++...++.|-. ..|..++. |=+..+.+
T Consensus 1610 EFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe-yEk~~Gde 1687 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE-YEKSHGDE 1687 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH-HHHhcCch
Confidence 678899999999999998863 346789999999999999999999999999999887653 56777887 56666667
Q ss_pred chhHHHHH
Q 041882 444 GGLVEIRD 451 (491)
Q Consensus 444 ~~~~~~~~ 451 (491)
+.+++++.
T Consensus 1688 ~~vE~VKa 1695 (1710)
T KOG1070|consen 1688 KNVEYVKA 1695 (1710)
T ss_pred hhHHHHHH
Confidence 77777643
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.7e-07 Score=83.39 Aligned_cols=216 Identities=15% Similarity=0.159 Sum_probs=111.7
Q ss_pred hhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 51 LKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKA 130 (491)
Q Consensus 51 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 130 (491)
+.+.|+..+|.-.|+..+..+ +-+..+|..|.......++-..|+..+.++.+.. +-+..+.-.|...|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 456677777777777776654 5566677777777777777777777777777765 55666677777777777777777
Q ss_pred HHHHHHhhhCCCCcCHHHHHHHH-----------HHHHhCCChhhHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCChH
Q 041882 131 IEVFNRMTSFDCVRTLQSFNSLL-----------DILVDNDRVDDAKRMFDDADKM-GFRPNLISFNVMIKGRLKKGEWE 198 (491)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~ll-----------~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~ 198 (491)
+.+|++.....++ |..+. ..+.....+....++|-++... +..+|......|--.|.-.|+++
T Consensus 373 l~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 7777766543211 00000 0001111122233333333222 22234444444444444555555
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHH
Q 041882 199 EASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPN-AVTYALLMEGLCFKGEYNEAKKMMFD 276 (491)
Q Consensus 199 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 276 (491)
.|...|+.++..... |..+||.|...++...+.++|+..|++.++. .|+ +.+...|.-+|...|.+++|...|-.
T Consensus 448 raiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 555555555443222 4445555555555555555555555555443 221 22233334444555555555444433
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.6e-05 Score=71.67 Aligned_cols=378 Identities=11% Similarity=0.051 Sum_probs=230.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcC-HHHHHHHHHHHHhCCC
Q 041882 83 IYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRT-LQSFNSLLDILVDNDR 161 (491)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~ 161 (491)
..+....|+++.|...|...+... +++...|..-..+|+..|++++|++=-.+-.+.. |+ ...|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhccc
Confidence 345678899999999999999887 6688899999999999999999988777666653 44 4689999999999999
Q ss_pred hhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHH---HHHHHHHHHhC---CCCCChhhHHHHHHHHHhc------
Q 041882 162 VDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEE---ASRVFDEMLER---EVPPTVVTYNSLIGFLCRT------ 229 (491)
Q Consensus 162 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~------ 229 (491)
+++|+..|.+-++.. +-+...++.+..++.......+ --.++..+... ........|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999999987763 2345666667666521100000 00011111000 0000111222222221110
Q ss_pred -CChhHHHHHHHHHH--------HcC-------CCC----------------------CHHHHHHHHHHHHhcCCHhHHH
Q 041882 230 -GEMGKAKGLFEDMI--------KKG-------TYP----------------------NAVTYALLMEGLCFKGEYNEAK 271 (491)
Q Consensus 230 -~~~~~a~~~~~~~~--------~~~-------~~~----------------------~~~~~~~ll~~~~~~~~~~~a~ 271 (491)
.+.+......-.+. ..| ..| -..-...+..+..+..+++.|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 00111111111110 000 011 1122456777888889999999
Q ss_pred HHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhcCCHHHHHHHH
Q 041882 272 KMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNI-------LINYLCKEDRAAEAYKVL 344 (491)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~~~~~~a~~~~ 344 (491)
+-+....+.. -+..-++....+|...|.+..+...-....+.|.. ...-|+. +..+|.+.++++.++..|
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 9999888775 45555677778888888888887777776665433 2223333 333566678888999888
Q ss_pred HHHHhCCCCCCHHHH-------------------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 041882 345 TEMQIGGCKPNAATY-------------------------RMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLV 399 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~-------------------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 399 (491)
.+.......|+...- ..-...+.+.|++..|...|.+++... +.|...|....-
T Consensus 322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAa 400 (539)
T KOG0548|consen 322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAA 400 (539)
T ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHH
Confidence 876654333332111 111344556788888888888888875 457788888888
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHh
Q 041882 400 GLLKGGKVDDACFVLEEMEKRKMRFD-LKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTY 472 (491)
Q Consensus 400 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~ 472 (491)
+|.+.|.+..|+.-.+...+. .|+ ...|..=..++....+++.+++.+.+-.+.. |++....+.+...+
T Consensus 401 c~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 401 CYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHH
Confidence 888889888888887777765 333 2223222333334445666666665544443 66555544444333
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.1e-06 Score=73.79 Aligned_cols=133 Identities=8% Similarity=0.011 Sum_probs=61.8
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCCh--hhHH
Q 041882 90 RDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAH-LVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRV--DDAK 166 (491)
Q Consensus 90 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~a~ 166 (491)
+..++|+.+.+.+++.+ +-+..+|+.....+...| ++++++..++++...+.+ +..+|+....++.+.|.. ++++
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHH
Confidence 34445555555555443 333344444444444444 345555555555544322 444454444333333331 3445
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 041882 167 RMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFL 226 (491)
Q Consensus 167 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 226 (491)
.+++++.+... -+..+|+...-++...|+++++++.++++++.++. |...|+.....+
T Consensus 129 ~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl 186 (320)
T PLN02789 129 EFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVI 186 (320)
T ss_pred HHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHH
Confidence 55555544432 14445555444555555555555555555554433 444444444333
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-06 Score=80.51 Aligned_cols=220 Identities=15% Similarity=0.057 Sum_probs=105.5
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 041882 122 GKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEAS 201 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 201 (491)
.+.|++.+|.-.|+.....++. +..+|..|.......++-..|+..+++..+... -+......|.-.|...|.-..|+
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHHHH
Confidence 4455566665556555554422 555566666666555555556655555555421 13344444445555555555555
Q ss_pred HHHHHHHhCCCC--------CChhhHHHHHHHHHhcCChhHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 041882 202 RVFDEMLEREVP--------PTVVTYNSLIGFLCRTGEMGKAKGLFEDMI-KKGTYPNAVTYALLMEGLCFKGEYNEAKK 272 (491)
Q Consensus 202 ~~~~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 272 (491)
+.++..+....+ ++...-+. ..+..........++|-++. ..+..+|+.+...|--.|.-.|+++.|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 555554432100 00000000 11111122223333333332 23333455555555555556666666666
Q ss_pred HHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041882 273 MMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEM 347 (491)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 347 (491)
.|+..+... +-|..+||-|...++...+.++|+.-|.+..+..+.- +.+...|.-.|...|.+++|.+.|-+.
T Consensus 452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 666655543 3345556666666666666666666666665542221 122223344555566666666555443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.3e-06 Score=73.35 Aligned_cols=207 Identities=11% Similarity=0.081 Sum_probs=138.0
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCC-ChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCh--
Q 041882 121 YGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDND-RVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEW-- 197 (491)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~-- 197 (491)
+...++.++|+.+.+++...... +..+|+....++...| .+++++..++++.+...+ +..+|+..-..+.+.|..
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhh
Confidence 34457788889998888876533 5667777777777777 578999999988876533 455676555555566653
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCH----hHH
Q 041882 198 EEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFK---GEY----NEA 270 (491)
Q Consensus 198 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~----~~a 270 (491)
++++.+++.+.+.+.. |..+|+....++...|+++++++.++++++.+.. +..+|+.....+.+. |.. +..
T Consensus 125 ~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 6778888888877654 8888888888888889999999999999887655 566666655544443 222 345
Q ss_pred HHHHHHHHHcCCCCChhcHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 041882 271 KKMMFDMAYRGCKPQLVNFGVLMSDLGKR----GKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCK 333 (491)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 333 (491)
..+....+... +-+...|+.+...+... +...+|.+.+.+....++. +......|++.|+.
T Consensus 203 l~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 55555555543 44556666666666552 2334566666665554433 55666666666654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.83 E-value=0.0001 Score=72.77 Aligned_cols=315 Identities=15% Similarity=0.150 Sum_probs=184.0
Q ss_pred hHHHhhhcCChHHHHHHHHHhhhCC--CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 041882 47 FVNDLKEIRDPDEALSLFHRHHQMG--SKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA 124 (491)
Q Consensus 47 ~~~~l~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (491)
.++++...+=+.+-+++++++.-.+ ...+...-+.|+-...+. +...+.+..+++...+. |+ +...+...
T Consensus 990 tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-~~------ia~iai~~ 1061 (1666)
T KOG0985|consen 990 TVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-PD------IAEIAIEN 1061 (1666)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-hh------HHHHHhhh
Confidence 4556666677777777777765322 222222333344333333 44555555555554331 11 23344555
Q ss_pred CCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 041882 125 HLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVF 204 (491)
Q Consensus 125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 204 (491)
+-+++|..+|++.. .+..+.+.|+.- -+..+.|.++-++.. ....|..+..+-.+.|.+.+|.+-|
T Consensus 1062 ~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred hHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHH
Confidence 66777777776543 244444444442 245556655554432 3456777888888888887777666
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 041882 205 DEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKP 284 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 284 (491)
-+. -|+..|..++....+.|.+++-.+++....+....|... +.++-+|++.++..+.++++. -|
T Consensus 1128 ika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gp 1192 (1666)
T KOG0985|consen 1128 IKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GP 1192 (1666)
T ss_pred Hhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CC
Confidence 432 166678888888888888888888887777765555544 467777888887776655432 46
Q ss_pred ChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041882 285 QLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVD 364 (491)
Q Consensus 285 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 364 (491)
+......+.+-|...+.++.|.-+|..+. -|..|...+...|++..|.+.-++. .+..||..+-.
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~Vcf 1257 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCF 1257 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHH
Confidence 66666667777777777777766665432 3666667777777777776655442 34556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 365 GFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
+|...+.+.-| +|...++.....-...++..|-..|-+++.+.+++...
T Consensus 1258 aCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1258 ACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 66655444322 22222233344445555666666666666655555443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.6e-05 Score=65.09 Aligned_cols=297 Identities=12% Similarity=0.037 Sum_probs=216.6
Q ss_pred hHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcC
Q 041882 47 FVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKET-LFISLIQHYGKAH 125 (491)
Q Consensus 47 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~ 125 (491)
+-+.+...|++..|+.-|....+.+ +.+-.++-.-...|...|+-..|+.=+..+.+. .||-. .-..-...+.+.|
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 4456777899999999999888633 333333444456677888888888888888876 44432 2334455678999
Q ss_pred CHHHHHHHHHHhhhCCCCcC--HHH------------HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 041882 126 LVDKAIEVFNRMTSFDCVRT--LQS------------FNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGR 191 (491)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~--~~~------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 191 (491)
.+++|..=|+.+...+...+ ... ....+..+...|+...|+.....+++.. +.|...+..-..+|
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence 99999999999987653211 111 2233455667899999999999998864 45888899999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH----HHHH---------H
Q 041882 192 LKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVT----YALL---------M 258 (491)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l---------l 258 (491)
...|++..|+.=++..-+..-. ++.++.-+-..+...|+.+.++...++.++. .||... |..+ +
T Consensus 200 i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred HhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999887776655333 6777778888999999999999999999875 344322 2111 1
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCh---hcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 041882 259 EGLCFKGEYNEAKKMMFDMAYRGCKPQL---VNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKED 335 (491)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 335 (491)
......++|.++.+..+...+....... ..+..+-.++...+++.+|+..-.++...... |..++..-..+|.-..
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhH
Confidence 2335667888888888887776422122 23445666777788999999999998876433 5888888899999999
Q ss_pred CHHHHHHHHHHHHhCC
Q 041882 336 RAAEAYKVLTEMQIGG 351 (491)
Q Consensus 336 ~~~~a~~~~~~~~~~~ 351 (491)
+++.|+.-|+...+.+
T Consensus 356 ~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999988754
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.4e-06 Score=82.72 Aligned_cols=201 Identities=14% Similarity=0.137 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHC-CCCCC---HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 041882 147 QSFNSLLDILVDNDRVDDAKRMFDDADKM-GFRPN---LISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSL 222 (491)
Q Consensus 147 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 222 (491)
..|-..|......++.++|.+++++.+.. ++.-. ...|.++++.-...|.-+...++|+++.+.. -....|..|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHH
Confidence 44555555555555555555555544432 11111 1233444444444444444555555544431 012334445
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC---hhcHHHHHHHHHhc
Q 041882 223 IGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQ---LVNFGVLMSDLGKR 299 (491)
Q Consensus 223 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~ 299 (491)
...|.+.+.+++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.+..+. -|. .....-.+..-.+.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhc
Confidence 55555555555555555555443 1123344445555555555545555555444433 121 11222223333344
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041882 300 GKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCK 353 (491)
Q Consensus 300 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 353 (491)
|+.+.+..+|+......++ ....|+.+++.-.++|+.+.+..+|++....++.
T Consensus 1614 GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 5555555555544444333 3444555555555555555555555555444433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.4e-06 Score=77.81 Aligned_cols=230 Identities=15% Similarity=0.135 Sum_probs=169.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 041882 185 NVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFK 264 (491)
Q Consensus 185 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 264 (491)
..+...+...|-...|..+|+++. .|..++.+|...|+.++|..+..+..+ -+||+..|..+.......
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence 456667778888888888887754 466788888888988888888888777 367888888877776666
Q ss_pred CCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041882 265 GEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVL 344 (491)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 344 (491)
.-+++|.++.+..... .-..+.......++++++.+.|+.-.+.++- ...+|-.+..+..+.+++..|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHH
Confidence 6677787777654432 1112222233468888999888887776544 6678888888888889999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-C
Q 041882 345 TEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKM-R 423 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~ 423 (491)
....... +-+...|+.+-.+|.+.++-.+|...+.+..+.+ ..+..+|...+....+.|.+++|.+.+.++.+... .
T Consensus 543 ~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 543 HRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred HHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 8887642 4445689999999999999999999999998876 45667778888888899999999999988874321 1
Q ss_pred CCHHHHHHHHHH
Q 041882 424 FDLKAWEGLVTD 435 (491)
Q Consensus 424 ~~~~~~~~ll~~ 435 (491)
-|......++..
T Consensus 621 ~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 621 KDDEVLLIIVRT 632 (777)
T ss_pred ccchhhHHHHHH
Confidence 144444445444
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.4e-05 Score=76.90 Aligned_cols=284 Identities=14% Similarity=0.112 Sum_probs=182.8
Q ss_pred CCCHHHHHHHHHH--HHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC-C--------
Q 041882 108 RCKETLFISLIQH--YGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM-G-------- 176 (491)
Q Consensus 108 ~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-------- 176 (491)
..|+.+-.++++. |...|+.+.|.+-.+-++ +..+|..+.+.|.+.++.+-|.-.+-.|... |
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 4566666666654 566788888877766554 4457888888888877777665555444321 0
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 041882 177 FRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYAL 256 (491)
Q Consensus 177 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 256 (491)
-.|+ .+=..+.-.....|.+++|+.+|++..+. ..|=..|...|.+++|+++-+.=-... =..||..
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~ 863 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYN 863 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHH
Confidence 1122 22222333456778999999999887763 345556777899999988876533222 2346666
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 041882 257 LMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDR 336 (491)
Q Consensus 257 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 336 (491)
...-+...++.+.|++.|++... +-...+..|. .++...+.+.+.+. |...|.--.+.+-..|+
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~Ge 927 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGE 927 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccc
Confidence 77777788888888888875431 2222222221 12333333444433 45666666677777899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHH
Q 041882 337 AAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEE 416 (491)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 416 (491)
.+.|+.+|....+ |-++++..+-.|+.++|.++-++ . -|......+.+.|-..|++.+|..+|-+
T Consensus 928 mdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e---s---gd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 928 MDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE---S---GDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred hHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh---c---ccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999887664 55667777778999998887654 2 2455556688889999999999988887
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHH
Q 041882 417 MEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRD 451 (491)
Q Consensus 417 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 451 (491)
.. +|...|. +|+.++..+.+.-+--
T Consensus 993 Aq---------afsnAIR-lcKEnd~~d~L~nlal 1017 (1416)
T KOG3617|consen 993 AQ---------AFSNAIR-LCKENDMKDRLANLAL 1017 (1416)
T ss_pred HH---------HHHHHHH-HHHhcCHHHHHHHHHh
Confidence 65 3445565 5777776666555433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.2e-05 Score=78.90 Aligned_cols=278 Identities=14% Similarity=0.140 Sum_probs=170.4
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHh-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 041882 145 TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLIS-FNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLI 223 (491)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 223 (491)
+...+..|+..+...+++++|.++.+...+. .|+... |-.+...+...++.+++..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 5677888888888888888888888866654 344332 22222245555554443333 333
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChH
Q 041882 224 GFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIE 303 (491)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 303 (491)
.......++..+..++..+...+ -+...+..+..+|-+.|+.+++..+++++++.. +-|..+.|.+...|+.. +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 33334444544444444554432 244567777888888888888888888888776 56677777777777777 888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041882 304 EAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAML 383 (491)
Q Consensus 304 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 383 (491)
+|++++.+.... |...+++..+.++|.++.+.. |+ +++.-..+.+.+.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~~ki~ 214 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIERKVL 214 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHHHHHH
Confidence 888887776654 555567777777777777642 22 2222333334444
Q ss_pred hC-CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhh
Q 041882 384 TS-RHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSV 462 (491)
Q Consensus 384 ~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~ 462 (491)
.. |..--..++..+-..|-..++|+++..+++.+.+..-. |......++.+|...-.....++++.+|...+-.+..+
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~ 293 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPV 293 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccH
Confidence 33 32334456666777788888999999999999976433 56667777775554444556777777777654333333
Q ss_pred HHHHHHH--HHhcCCCcc
Q 041882 463 MNVVDLL--WTYLGMGTC 478 (491)
Q Consensus 463 ~~~~~l~--~~~~~~g~~ 478 (491)
.....-+ ...++.|.+
T Consensus 294 ~~~i~~fek~i~f~~G~y 311 (906)
T PRK14720 294 KDCIADFEKNIVFDTGNF 311 (906)
T ss_pred HHHHHHHHHHeeecCCCE
Confidence 3333333 334555543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.6e-05 Score=73.28 Aligned_cols=138 Identities=16% Similarity=0.195 Sum_probs=78.7
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 258 MEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRA 337 (491)
Q Consensus 258 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 337 (491)
+.+......|.+|+.+++.+.... .-..-|..+.+.|+..|+++.|+++|-+.- .++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 444556677777777777776653 233456667777777777777777775432 244566777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 041882 338 AEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEM 417 (491)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 417 (491)
++|.++-.+... -......|..-..-.-.+|++.+|.++|-.+-. |+. .|..|-+.|..++.+++.++-
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHHh
Confidence 777777666542 122333444444445566666666655432211 221 234455555555555554443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2e-05 Score=75.01 Aligned_cols=215 Identities=17% Similarity=0.117 Sum_probs=146.0
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 041882 150 NSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRT 229 (491)
Q Consensus 150 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 229 (491)
..+...+...|-..+|..+|+++. .|..++.+|+..|+..+|..+..+..++ +|++..|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 445566667777778887777643 3566777788888888888887777663 56777777777776666
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHH
Q 041882 230 GEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLL 309 (491)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 309 (491)
.-+++|.++.+..... .-..+.......+++.++.+.|+.-.+.+ +.-..+|-.+..+..+.++++.|...|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 6677777777665332 11122222234677777777777666553 344556666666777777888888877
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 310 SEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 310 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 385 (491)
..-....+. +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|++.+.++.+.
T Consensus 543 ~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 543 HRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 777765444 56678888888888888888888888877765 444455656666667778888888887777654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.9e-05 Score=66.00 Aligned_cols=165 Identities=16% Similarity=0.111 Sum_probs=118.6
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHH
Q 041882 74 HSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLL 153 (491)
Q Consensus 74 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 153 (491)
-|... ..+-..+...|+-+....+........ +.+.......+....+.|++..|+..|++..... ++|..+|+.+.
T Consensus 65 ~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lg 141 (257)
T COG5010 65 EDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLG 141 (257)
T ss_pred chHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHH
Confidence 34444 555566666777777766666644332 4566677778888888888888888888887765 45788888888
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 041882 154 DILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMG 233 (491)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 233 (491)
.+|.+.|+++.|..-|.+..+.... +....+.+.-.+.-.|+.+.|..++......+.. |..+-..+.......|+++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChH
Confidence 8888888888888888887776322 4556677777777788888888888887776433 6667777777788888888
Q ss_pred HHHHHHHHHH
Q 041882 234 KAKGLFEDMI 243 (491)
Q Consensus 234 ~a~~~~~~~~ 243 (491)
+|..+...-.
T Consensus 220 ~A~~i~~~e~ 229 (257)
T COG5010 220 EAEDIAVQEL 229 (257)
T ss_pred HHHhhccccc
Confidence 8877765543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.62 E-value=1e-05 Score=70.60 Aligned_cols=183 Identities=11% Similarity=0.010 Sum_probs=89.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCH--HHHHH
Q 041882 77 PSYASLIYKLARARDFDAVETVLGYIQDFNIRCKE---TLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTL--QSFNS 151 (491)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 151 (491)
..+..+...+...|+++.|...++.+.... +.+. ..+..+...+...|++++|+..++++.+....... .++..
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 344444555555555555555555555443 1111 33444555555556666666665555443211010 12333
Q ss_pred HHHHHHhC--------CChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 041882 152 LLDILVDN--------DRVDDAKRMFDDADKMGFRPNLI-SFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSL 222 (491)
Q Consensus 152 ll~~~~~~--------~~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 222 (491)
+..++... |+++.|.+.|+.+.... |+.. .+..+... .. ... .. ......+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~-~~---~~~------~~--------~~~~~~~ 172 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM-DY---LRN------RL--------AGKELYV 172 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH-HH---HHH------HH--------HHHHHHH
Confidence 33333332 45566666666665542 2221 11111100 00 000 00 0011234
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 041882 223 IGFLCRTGEMGKAKGLFEDMIKKGT--YPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 223 l~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (491)
...+.+.|++++|...++...+... +.....+..+..++...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566777777777777777766522 123456667777777777777777777766554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.8e-05 Score=66.26 Aligned_cols=147 Identities=9% Similarity=0.082 Sum_probs=100.4
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 041882 259 EGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAA 338 (491)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 338 (491)
..|...|+++.+....+.+.. |. . .+...++.+++...++...+.++. +...|..+...|...|+++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHH
Confidence 456677777766444322211 11 0 111255667777777777776555 7788888888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHH
Q 041882 339 EAYKVLTEMQIGGCKPNAATYRMMVDGF-LRVED--FEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLE 415 (491)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 415 (491)
+|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++..+.+ +.+...+..+...+...|++++|...|+
T Consensus 91 ~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 91 NALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888887754 44566666666653 56666 488888888888864 2356777778888888888888888888
Q ss_pred HHHHC
Q 041882 416 EMEKR 420 (491)
Q Consensus 416 ~~~~~ 420 (491)
++.+.
T Consensus 169 ~aL~l 173 (198)
T PRK10370 169 KVLDL 173 (198)
T ss_pred HHHhh
Confidence 88765
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00014 Score=69.56 Aligned_cols=190 Identities=17% Similarity=0.214 Sum_probs=93.2
Q ss_pred HHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhH
Q 041882 155 ILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGK 234 (491)
Q Consensus 155 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 234 (491)
+......|.+|+.+++.+.... .-..-|..+...|+..|+++.|.++|.+. ..++-.|.+|.+.|+|+.
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 3344455566666665555442 12334555555666666666666665331 224445556666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041882 235 AKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKK 314 (491)
Q Consensus 235 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 314 (491)
|.++-++.. |.......|-+-..-+-..|++.+|.++|-.+. .|+ ..|.+|-+.|..+..+++.++-.-
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhCh
Confidence 666555442 233334444444444555566666555543222 233 234555566655555555443321
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041882 315 RQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKV 378 (491)
Q Consensus 315 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 378 (491)
. .-..+...+..-|-..|+...|..-|-+.. -|.+.++.|-..+-|+.|.++
T Consensus 879 d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 879 D---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred h---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHH
Confidence 1 112233344445555566666665554332 133444455555555555544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-05 Score=70.23 Aligned_cols=186 Identities=12% Similarity=0.040 Sum_probs=121.2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChh----
Q 041882 214 PTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTY-P-NAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLV---- 287 (491)
Q Consensus 214 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---- 287 (491)
.....+..+...+...|++++|...|+++...... | ...++..+..++...|++++|...++.+.+.. |+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence 35667777888888999999999999988775322 1 12456777788888999999999999988763 3221
Q ss_pred cHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 041882 288 NFGVLMSDLGKR--------GKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATY 359 (491)
Q Consensus 288 ~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 359 (491)
++..+..++... |+.+.|.+.++.+.+..+. +...+..+..... .... .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~------~~--------~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNR------LA--------GKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHH------HH--------HHH
Confidence 344444445443 6677788888887776433 2222222211110 0000 00 011
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 360 RMMVDGFLRVEDFEGSLKVLNAMLTSRH--CPRLETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 360 ~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
..+...+.+.|++++|...++.+.+... +.....+..+..++...|++++|..+++.+..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2345567888999999999988887621 123567788888899999999999988888754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.3e-08 Score=54.15 Aligned_cols=32 Identities=41% Similarity=0.800 Sum_probs=14.5
Q ss_pred CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 176 GFRPNLISFNVMIKGRLKKGEWEEASRVFDEM 207 (491)
Q Consensus 176 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 207 (491)
|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 33444444444444444444444444444443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.5e-05 Score=75.63 Aligned_cols=170 Identities=11% Similarity=0.065 Sum_probs=110.3
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHH
Q 041882 74 HSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLL 153 (491)
Q Consensus 74 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 153 (491)
.+...+..|+..+...+++++|.++.+...+.. +.....|-.+...+.+.++...+..+ .++
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 345677888888888888888888888766654 33344444444466666665544433 233
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 041882 154 DILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMG 233 (491)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 233 (491)
.......++..+..+...+...+ -+...+..+..+|-+.|+.+++..+++++.+.... |+.+.|.+...|... +.+
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHH
Confidence 33344445544444555555432 23446677778888888888888888888887633 777888888888888 888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 041882 234 KAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (491)
+|.+++.+.... +...+++..+..++..+...
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 888887777654 44445555666666655554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00012 Score=72.21 Aligned_cols=421 Identities=12% Similarity=0.026 Sum_probs=226.5
Q ss_pred hhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHH
Q 041882 51 LKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFN-IRCKETLFISLIQHYGKAHLVDK 129 (491)
Q Consensus 51 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 129 (491)
++...+...|.+.|+...+.+ ..+......+...++...+++.|..+.-..-+.. ...-..-|....-.|.+.++...
T Consensus 502 Yrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~ 580 (1238)
T KOG1127|consen 502 YRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHG 580 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhh
Confidence 344457778888998888765 5677788889999999999999998843333221 00111223345556778889999
Q ss_pred HHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHH--HHHhcCChHHHHHHHHHH
Q 041882 130 AIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIK--GRLKKGEWEEASRVFDEM 207 (491)
Q Consensus 130 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~ 207 (491)
|+.-|+.....++. |...|..+..+|...|++..|+++|.+.... .|+. +|..... .-+..|.+.+++..+...
T Consensus 581 aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 581 AVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred HHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999988887644 8889999999999999999999999887654 3443 2322221 234456666666666554
Q ss_pred HhC------CCCCChhhHHHHHHHHHhcCChhHHHHHHHH----------------------------------------
Q 041882 208 LER------EVPPTVVTYNSLIGFLCRTGEMGKAKGLFED---------------------------------------- 241 (491)
Q Consensus 208 ~~~------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~---------------------------------------- 241 (491)
... +..--..++..+...+.-.|-..++..++++
T Consensus 657 i~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~ 736 (1238)
T KOG1127|consen 657 IYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNM 736 (1238)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHH
Confidence 332 0000111111111111111111111111111
Q ss_pred ---------HHHcCCCC--------------------CHHHHHHHHHHHHh-------cC-CHhHHHHHHHHHHHcCCCC
Q 041882 242 ---------MIKKGTYP--------------------NAVTYALLMEGLCF-------KG-EYNEAKKMMFDMAYRGCKP 284 (491)
Q Consensus 242 ---------~~~~~~~~--------------------~~~~~~~ll~~~~~-------~~-~~~~a~~~~~~~~~~~~~~ 284 (491)
....+..+ +..+|..+...|.+ .+ +...|+..++..++.. ..
T Consensus 737 h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-an 815 (1238)
T KOG1127|consen 737 HYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-AN 815 (1238)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hc
Confidence 11111111 11112222221111 11 1124455555544432 22
Q ss_pred ChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041882 285 QLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVD 364 (491)
Q Consensus 285 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 364 (491)
+..+|+.| ......|++.-+...|-.-....+. ...+|..+...+.+..+++.|...|....... +.|...|.....
T Consensus 816 n~~~WnaL-GVlsg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Al 892 (1238)
T KOG1127|consen 816 NEGLWNAL-GVLSGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEAL 892 (1238)
T ss_pred cHHHHHHH-HHhhccchhhhhhhhhhhhhhcccc-chhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHH
Confidence 33344443 3335556677766666665555443 66778878878888899999999998877542 344455555444
Q ss_pred HHHhcCCHHHHHHHHHHH--HhC--CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHH----------HHHCCCCCCHHHHH
Q 041882 365 GFLRVEDFEGSLKVLNAM--LTS--RHCPRLETFSCLLVGLLKGGKVDDACFVLEE----------MEKRKMRFDLKAWE 430 (491)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~--~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~----------~~~~~~~~~~~~~~ 430 (491)
.....|+.-+...+|..- ... |-.++..-|-........+|+.++-+.-.+. ... |..-+...|.
T Consensus 893 i~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~ 971 (1238)
T KOG1127|consen 893 IPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYA 971 (1238)
T ss_pred hHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHH
Confidence 445667777777777652 221 3234444444444445556665544433332 222 2222344555
Q ss_pred HHHHHHHhcCCCcchhHHHHHHh---hhhhhhh-hhHHHHHHHHHhcCCCcchhh
Q 041882 431 GLVTDACIGDGNAGGLVEIRDMR---DYSMAIS-SVMNVVDLLWTYLGMGTCVVI 481 (491)
Q Consensus 431 ~ll~~~~~~~~~~~~~~~~~~m~---~~~~~~~-~~~~~~~l~~~~~~~g~~~~~ 481 (491)
+.....-+.+.+.+++....+.+ +...+.+ +...--..+..+...|.++.+
T Consensus 972 ~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A 1026 (1238)
T KOG1127|consen 972 ANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESA 1026 (1238)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhH
Confidence 55554445555555555544433 2222222 222444556666677766533
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.8e-08 Score=54.03 Aligned_cols=32 Identities=34% Similarity=0.571 Sum_probs=19.1
Q ss_pred CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 041882 386 RHCPRLETFSCLLVGLLKGGKVDDACFVLEEM 417 (491)
Q Consensus 386 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 417 (491)
|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666555
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.1e-05 Score=65.82 Aligned_cols=157 Identities=15% Similarity=0.148 Sum_probs=76.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 041882 115 ISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKK 194 (491)
Q Consensus 115 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 194 (491)
..+-..+...|+-+....+........ ..+....+.++....+.|++..|+..+.+..... ++|..+|+.+--+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 334444444455555554444433322 1233444445555555555555555555554432 34455555555555555
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 041882 195 GEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMM 274 (491)
Q Consensus 195 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 274 (491)
|+++.|..-|.+..+.... +....+.+.-.+.-.|+++.|..++......+.. |..+-..+.......|+++.|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 5555555555555443222 3444555555555555555555555555444222 4444444444555555555555444
Q ss_pred H
Q 041882 275 F 275 (491)
Q Consensus 275 ~ 275 (491)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 3
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.6e-05 Score=75.21 Aligned_cols=180 Identities=9% Similarity=0.026 Sum_probs=124.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 041882 248 YPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNIL 327 (491)
Q Consensus 248 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 327 (491)
..+...+..|.....+.|.+++|..+++...+.. +-+......+..++.+.+++++|...+++.....+. +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 3357778888888888888888888888888763 333455666777788888888888888888887665 67777778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCH
Q 041882 328 INYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKV 407 (491)
Q Consensus 328 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 407 (491)
..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+.. .+....|+.++ ++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHH
Confidence 888888888888888888888732 4446778888888888888888888888887762 24445555443 344
Q ss_pred HHHHHHHHHHHHC----CCCCCHHHHHHHHHHHH
Q 041882 408 DDACFVLEEMEKR----KMRFDLKAWEGLVTDAC 437 (491)
Q Consensus 408 ~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~ 437 (491)
..-..+++++.-. |..........+|.-+-
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIG 266 (694)
T ss_pred HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHh
Confidence 4455566665532 22333444555554333
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.6e-05 Score=65.31 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=70.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHH-HhcCC--hHHH
Q 041882 229 TGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDL-GKRGK--IEEA 305 (491)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~--~~~a 305 (491)
.++.+++...++...+.... +...|..+...|...|++++|...|+...+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 44455555555555554322 55666666666666666666666666666553 33444455555442 44454 3666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 306 KSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIG 350 (491)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 350 (491)
.+++++..+.++. +...+..+...+.+.|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666666554 5566666666666666666666666666654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-05 Score=63.63 Aligned_cols=109 Identities=11% Similarity=-0.004 Sum_probs=78.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 306 KSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 385 (491)
+.++++..+. ++..+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...|+++...
T Consensus 13 ~~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455555554 33335556677777888888888888877654 456677777777888888888888888888875
Q ss_pred CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 386 RHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 386 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
+ +.+...+..+..++...|++++|...|+...+.
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 346677777888888888888888888888764
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00018 Score=60.41 Aligned_cols=248 Identities=14% Similarity=0.106 Sum_probs=120.4
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhh
Q 041882 85 KLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDD 164 (491)
Q Consensus 85 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 164 (491)
-+.-.|+|..+...-....... -+...-.-+-++|...|.+...+. ++.... .|.......+......-++.++
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHH
Confidence 3344455555544443333221 233333344455555555443222 222221 2233333333333333333333
Q ss_pred HH-HHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041882 165 AK-RMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMI 243 (491)
Q Consensus 165 a~-~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 243 (491)
.+ ++.+.+.......+......-...|++.+++++|++...... +......=...+.+..+++.|.+.+++|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 233333333333333333334445666677777776665511 22233333344455566677777777776
Q ss_pred HcCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 041882 244 KKGTYPNAVTYALLMEGLCF----KGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKP 319 (491)
Q Consensus 244 ~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 319 (491)
+.. +..|.+.|..++.+ .+...+|.-+|++|-+. ..|+..+.+....++...|++++|..+++....+..+
T Consensus 165 ~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~- 239 (299)
T KOG3081|consen 165 QID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK- 239 (299)
T ss_pred ccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-
Confidence 541 44455555555433 34566677777776653 2566666666666667777777777777777666555
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 041882 320 DVVTYNILINYLCKEDRA-AEAYKVLTEMQI 349 (491)
Q Consensus 320 ~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~ 349 (491)
++.+...++-.-...|.. +...+.+.++..
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 444444444433334433 334455555544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00014 Score=61.02 Aligned_cols=249 Identities=16% Similarity=0.131 Sum_probs=134.3
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 041882 154 DILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMG 233 (491)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 233 (491)
+-+.-.|.+..++..-....... -+...-..+.++|...|.+..... ++.... .|.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence 33444566666665554443321 233344445566776666554332 222221 223333333333333334433
Q ss_pred HHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 234 KAK-GLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEM 312 (491)
Q Consensus 234 ~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 312 (491)
.-+ ++.+.+.......+......-...|+..+++++|++...... +......=+..+.+..+++-|...++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 334444443333333333334455677777887777766521 1222222334455666777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041882 313 KKRQYKPDVVTYNILINYLCK----EDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHC 388 (491)
Q Consensus 313 ~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 388 (491)
... -+..+.+.|..++.+ .+.+.+|.-+|++|-+. .+|+..+.+....++...|++++|..+++.++....
T Consensus 164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~- 238 (299)
T KOG3081|consen 164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA- 238 (299)
T ss_pred Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-
Confidence 764 255666666666654 24567777777777653 467777777777777777777777777777777632
Q ss_pred CCHHhHHHHHHHHHcCCCHHH-HHHHHHHHHH
Q 041882 389 PRLETFSCLLVGLLKGGKVDD-ACFVLEEMEK 419 (491)
Q Consensus 389 ~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~ 419 (491)
.++.+...++.+-...|...+ ..+.+.++..
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 345555555555555555433 3444555543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00014 Score=72.42 Aligned_cols=183 Identities=10% Similarity=0.041 Sum_probs=140.2
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHH
Q 041882 212 VPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGV 291 (491)
Q Consensus 212 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (491)
...++..+..|.....+.|.+++|..+++...+.... +......+...+.+.+++++|....++..... +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 4447889999999999999999999999999986333 56677788899999999999999999999885 445666777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 041882 292 LMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVED 371 (491)
Q Consensus 292 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 371 (491)
+..++.+.|++++|..+|+++...+.. +..++..+...+...|+.++|...|+...+.. .+....|+..+ ++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VD 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HH
Confidence 888899999999999999999985443 67889999999999999999999999998763 45556655543 23
Q ss_pred HHHHHHHHHHHHhCC----CCCCHHhHHHHHHHHHcC
Q 041882 372 FEGSLKVLNAMLTSR----HCPRLETFSCLLVGLLKG 404 (491)
Q Consensus 372 ~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~ 404 (491)
...-...++++.-.+ .+..+......+.-|.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 344455566654432 222344455555555543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0012 Score=61.08 Aligned_cols=410 Identities=12% Similarity=0.089 Sum_probs=250.1
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHH
Q 041882 73 KHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSL 152 (491)
Q Consensus 73 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 152 (491)
+-|..+|..|++-+..+ ..+++.+.++.+...- +..+..|..-+..-.+.++++..+.+|.+.... ..+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 77899999999987666 9999999999998764 677888999999999999999999999998764 3467778777
Q ss_pred HHHHHhC-CChhh----HHHHHHHHH-HCCCCCC-HHhHHHHHHH---------HHhcCChHHHHHHHHHHHhCCCCCCh
Q 041882 153 LDILVDN-DRVDD----AKRMFDDAD-KMGFRPN-LISFNVMIKG---------RLKKGEWEEASRVFDEMLEREVPPTV 216 (491)
Q Consensus 153 l~~~~~~-~~~~~----a~~~~~~~~-~~~~~p~-~~~~~~ll~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~ 216 (491)
+.--.+. +.... ..+.|+-.. +.|+.+- ...|+..+.. +....+++...++++++...-+.-=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 7655443 33222 233344333 3353332 2234444432 34445677788888887764222111
Q ss_pred hhHH------HHHHH-------HHhcCChhHHHHHHHHHHH--cCCCCCHH---------------HHHHHHHHHHhcCC
Q 041882 217 VTYN------SLIGF-------LCRTGEMGKAKGLFEDMIK--KGTYPNAV---------------TYALLMEGLCFKGE 266 (491)
Q Consensus 217 ~~~~------~ll~~-------~~~~~~~~~a~~~~~~~~~--~~~~~~~~---------------~~~~ll~~~~~~~~ 266 (491)
..|+ .=|+. --+...+..|.++++++.. .|...+.. .|..+|.- .+.+-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNp 251 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCC
Confidence 1221 11111 1133456678888877754 23321111 13333321 11111
Q ss_pred Hh---------HHHHHHHHHH-HcCCCCChhcH-H----HHHHHHHhcCC-------hHHHHHHHHHHHHcCCCCCHHHH
Q 041882 267 YN---------EAKKMMFDMA-YRGCKPQLVNF-G----VLMSDLGKRGK-------IEEAKSLLSEMKKRQYKPDVVTY 324 (491)
Q Consensus 267 ~~---------~a~~~~~~~~-~~~~~~~~~~~-~----~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~ 324 (491)
.. ...-.+++.. -.+..|+.... . ..-+.+...|+ -+++..+++...+.-..-+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 1111122211 12223322111 0 11122333343 34566666665543222244444
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHhHHHHHHH
Q 041882 325 NILINYLCKED---RAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCP-RLETFSCLLVG 400 (491)
Q Consensus 325 ~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~ 400 (491)
..+.+.--..- ..+.....+.++......--..+|...++.-.+....+.|..+|.++.+.+..+ ++.++++++..
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 44443221111 255566666666554222223467788888888899999999999999986666 67778888877
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhh-hhHHHHHHHHHhcCCCcch
Q 041882 401 LLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAIS-SVMNVVDLLWTYLGMGTCV 479 (491)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 479 (491)
+| +++.+-|.++|+-=.+. ...++..-...+.-+...++...+-.++++....++.|+ +...++.+...-...|+..
T Consensus 412 ~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 76 57889999999975543 444667777788878888888888888898887766654 6788889999999999999
Q ss_pred hhhhHhhhhc
Q 041882 480 VIDLFQKREM 489 (491)
Q Consensus 480 ~~~~~~k~~~ 489 (491)
.+..+-||+.
T Consensus 490 si~~lekR~~ 499 (656)
T KOG1914|consen 490 SILKLEKRRF 499 (656)
T ss_pred HHHHHHHHHH
Confidence 8888877753
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.7e-05 Score=61.52 Aligned_cols=88 Identities=7% Similarity=-0.136 Sum_probs=36.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 041882 295 DLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEG 374 (491)
Q Consensus 295 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 374 (491)
++...|++++|...|+......+. +...|..+..++...|++++|...|+...+.. +.+...+..+..++...|++++
T Consensus 33 ~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~e 110 (144)
T PRK15359 33 ASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPGL 110 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHH
Confidence 333444444444444444433222 33444444444444444444444444444322 2233344444444444444444
Q ss_pred HHHHHHHHHh
Q 041882 375 SLKVLNAMLT 384 (491)
Q Consensus 375 a~~~~~~~~~ 384 (491)
|...|+..++
T Consensus 111 Ai~~~~~Al~ 120 (144)
T PRK15359 111 AREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHH
Confidence 4444444444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00055 Score=57.09 Aligned_cols=188 Identities=15% Similarity=0.148 Sum_probs=113.6
Q ss_pred cCChHHHHHHHHHhhh---CC-CCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 041882 54 IRDPDEALSLFHRHHQ---MG-SKHSYP-SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVD 128 (491)
Q Consensus 54 ~~~~~~A~~~~~~~~~---~~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 128 (491)
..++++.++++..+.. .| ..++.. .|..++-+....|+.+.|..+++.+...- +-+..+-..-.-.+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 3567777777776652 22 333333 34555566667777777777777776653 333333222222334457777
Q ss_pred HHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 041882 129 KAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEML 208 (491)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 208 (491)
+|+++++.+.+.+ +.|..++-.-+.+.-..|..-+|++-+.+..+. +..|...|.-+...|...|+++.|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 7777777777766 335666666666666667666777666666554 34577777777777777777777777777776
Q ss_pred hCCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHc
Q 041882 209 EREVPPTVVTYNSLIGFLCRTG---EMGKAKGLFEDMIKK 245 (491)
Q Consensus 209 ~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~ 245 (491)
-..+. +...+..+...+.-.| +.+.+.++|.+..+.
T Consensus 182 l~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 65322 4445555555444333 344566666666664
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.8e-05 Score=61.10 Aligned_cols=98 Identities=12% Similarity=0.224 Sum_probs=61.2
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHH
Q 041882 76 YPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDI 155 (491)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 155 (491)
......+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|...+++....+ +.+...+..+..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3445555556666666777776666666654 4456666666666666666666666666665554 2245566666666
Q ss_pred HHhCCChhhHHHHHHHHHHC
Q 041882 156 LVDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~~ 175 (491)
+...|++++|...|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00032 Score=64.10 Aligned_cols=139 Identities=15% Similarity=0.183 Sum_probs=70.8
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 261 LCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEA 340 (491)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 340 (491)
+...|++++|+..+..+.... +-|........+.+.+.++.++|.+.++.+....+. .....-.+..+|.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHH
Confidence 344555555555555555442 223333344455555555556666555555554222 244444455555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 341 YKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
+.++++..... +-|+..|..|.++|...|+..++..... ..|...|+++.|...+....+.
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 55555554432 4455555555555555555544443322 2233445555555555555543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00086 Score=55.99 Aligned_cols=186 Identities=17% Similarity=0.084 Sum_probs=103.7
Q ss_pred ChHHHHHHHHHHHhC---C-CCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHH
Q 041882 196 EWEEASRVFDEMLER---E-VPPTVV-TYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEA 270 (491)
Q Consensus 196 ~~~~a~~~~~~~~~~---~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 270 (491)
+.++..+++..+... | ..++.. .|..++-+....|+.+.|...++.+.+. ++-+..+-..-.--+-..|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhH
Confidence 344555555444331 2 223332 2333444555566667777777766654 221222222222223456677777
Q ss_pred HHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 271 KKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIG 350 (491)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 350 (491)
+++++.+++.+ +.|..++--=+.+.-..|+.-+|++-+....+.- ..|...|..+...|...|++++|.-.++++.-.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 77777777665 4445555444444555666666666666666552 337777777777777777777777777777654
Q ss_pred CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 041882 351 GCKPNAATYRMMVDGFLRVE---DFEGSLKVLNAMLTS 385 (491)
Q Consensus 351 ~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~ 385 (491)
. |.++..+..+...+.-.| +.+.+.++|.+.++.
T Consensus 184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 2 444445555555443333 455677777777764
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.7e-05 Score=59.27 Aligned_cols=95 Identities=14% Similarity=0.078 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLL 402 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 402 (491)
....+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|..++++..+.+ +.+...+..+...+.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 34444445555555555555555554432 3344455555555555555666665555555542 223444555555555
Q ss_pred cCCCHHHHHHHHHHHHH
Q 041882 403 KGGKVDDACFVLEEMEK 419 (491)
Q Consensus 403 ~~g~~~~a~~~~~~~~~ 419 (491)
..|++++|...|+...+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 97 ALGEPESALKALDLAIE 113 (135)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 56666666666655554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.8e-05 Score=68.57 Aligned_cols=123 Identities=18% Similarity=0.267 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 041882 290 GVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRV 369 (491)
Q Consensus 290 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 369 (491)
..|+..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++.+..... +-+...+..-...|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344555555666677777777766653 22 33445566666666666666666666432 33444455455556666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 370 EDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 370 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
++++.|..+.+++.+.. +.+..+|..|..+|...|+++.|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777776642 2244567777777777777777776666654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0017 Score=59.60 Aligned_cols=143 Identities=19% Similarity=0.105 Sum_probs=118.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhc
Q 041882 221 SLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQ-LVNFGVLMSDLGKR 299 (491)
Q Consensus 221 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~ 299 (491)
-....+...|++++|+..++.++.. .+-|+.........+.+.++.++|.+.++.+... .|+ ....-.+..++.+.
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhc
Confidence 3344566789999999999998876 3346677777788899999999999999999987 455 55556778899999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041882 300 GKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVL 379 (491)
Q Consensus 300 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 379 (491)
|++.+|+.+++........ |+..|..|.++|...|+..++.....+ .+...|+++.|...+
T Consensus 388 g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l 448 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFL 448 (484)
T ss_pred CChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHH
Confidence 9999999999999887665 899999999999999999888776554 455679999999998
Q ss_pred HHHHhC
Q 041882 380 NAMLTS 385 (491)
Q Consensus 380 ~~~~~~ 385 (491)
....+.
T Consensus 449 ~~A~~~ 454 (484)
T COG4783 449 MRASQQ 454 (484)
T ss_pred HHHHHh
Confidence 888876
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0093 Score=58.94 Aligned_cols=108 Identities=16% Similarity=0.150 Sum_probs=64.0
Q ss_pred HhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHH--HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 50 DLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKL--ARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLV 127 (491)
Q Consensus 50 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 127 (491)
+....+++..|++......+. .|+. .|..++.++ .+.|+.++|..+++.....+. .|..+...+-.+|...++.
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhh
Confidence 445556677777776666653 2332 334444333 356677777766666665552 3666666677777777777
Q ss_pred HHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChh
Q 041882 128 DKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVD 163 (491)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 163 (491)
++|..+|++..... |+......+..+|.+.+++.
T Consensus 94 d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 94 DEAVHLYERANQKY--PSEELLYHLFMAYVREKSYK 127 (932)
T ss_pred hHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHH
Confidence 77777777766543 45555556666666655543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.9e-05 Score=67.89 Aligned_cols=124 Identities=17% Similarity=0.154 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 041882 114 FISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLK 193 (491)
Q Consensus 114 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 193 (491)
...|+..+...++++.|+.+|+++.+.. |+ ....++..+...++-.+|.+++.+..... +-+..........+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3344445555556666666666655543 22 33335555555555556666655555432 2234444444455555
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041882 194 KGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMI 243 (491)
Q Consensus 194 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 243 (491)
.++++.|+++.+++.+... -+-.+|..|..+|...|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 5666666666666555421 134456666666666666666665555543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.011 Score=58.54 Aligned_cols=412 Identities=11% Similarity=0.039 Sum_probs=235.2
Q ss_pred hhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 51 LKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKA 130 (491)
Q Consensus 51 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 130 (491)
+.+.|+.++|..+++.....+ ..|..+...+-..|...+..++|..+|+...... |+......+..+|++.+++.+-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999998877655 3377788998899999999999999999998874 5588888888889998887654
Q ss_pred HHHHHHhhhCCCCcCHHHHHHHHHHHHhC-CC---------hhhHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCChHH
Q 041882 131 IEVFNRMTSFDCVRTLQSFNSLLDILVDN-DR---------VDDAKRMFDDADKMG-FRPNLISFNVMIKGRLKKGEWEE 199 (491)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~---------~~~a~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~ 199 (491)
.+.--++-+. .+.+...+=++++.+... .. ..-|.+.++.+.+.+ .--+..-.......+...|.+++
T Consensus 130 Qkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 3333232221 122343433444444432 11 224555666666553 21122233344455667888999
Q ss_pred HHHHH-HHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------------
Q 041882 200 ASRVF-DEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLC---------------- 262 (491)
Q Consensus 200 a~~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---------------- 262 (491)
|..++ ....+.-...+...-+.-+..+...+++.+..++-.++...|.. | |...+..+.
T Consensus 209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s 284 (932)
T KOG2053|consen 209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHS 284 (932)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhh
Confidence 99999 34444434445556667788888999999999999999988654 2 333222211
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 041882 263 FKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGK---RGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAE 339 (491)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 339 (491)
..+..+...+...+.... .....|-+-+.++.+ -|+.+++...|-+- .|-+| .|..=+..|...=..++
T Consensus 285 ~~~~l~~~~ek~~~~i~~---~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q 356 (932)
T KOG2053|consen 285 LSKSLDECIEKAQKNIGS---KSRGPYLARLELDKRYKLIGDSEEMLSYYFKK--FGDKP---CCAIDLNHYLGHLNIDQ 356 (932)
T ss_pred hhhhHHHHHHHHHHhhcc---cccCcHHHHHHHHHHhcccCChHHHHHHHHHH--hCCCc---HhHhhHHHhhccCCHHH
Confidence 111122222222222211 122334444444444 36666655444332 22222 33333444444445555
Q ss_pred HHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCC-----HHHHHHHHHHHH---hCC------CCCCHH------
Q 041882 340 AYKVLTEMQIGGCKPNAA-------TYRMMVDGFLRVED-----FEGSLKVLNAML---TSR------HCPRLE------ 392 (491)
Q Consensus 340 a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~~~-----~~~a~~~~~~~~---~~~------~~~~~~------ 392 (491)
-..++...... .++.. .+...+..-...|. .+....++.++. ++| .-|+..
T Consensus 357 ~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~ 434 (932)
T KOG2053|consen 357 LKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDEL 434 (932)
T ss_pred HHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHH
Confidence 56666655432 22222 12233333233342 333444444333 223 223332
Q ss_pred ---hHHHHHHHHHcCCCHHH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHH
Q 041882 393 ---TFSCLLVGLLKGGKVDD---ACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVV 466 (491)
Q Consensus 393 ---~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~ 466 (491)
+.+.+++.+.+.++... |+-+++.-.... .-|..+--.+|..|+..|....+.+.++.|--..++.++...+.
T Consensus 435 llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~ 513 (932)
T KOG2053|consen 435 LLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI 513 (932)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH
Confidence 34667788888888763 444444444321 22445555688899999999999999999988888877654443
Q ss_pred HHHHHhcCCCcchhhhh
Q 041882 467 DLLWTYLGMGTCVVIDL 483 (491)
Q Consensus 467 ~l~~~~~~~g~~~~~~~ 483 (491)
. ..+...|+|..+--
T Consensus 514 ~--~~~~t~g~~~~~s~ 528 (932)
T KOG2053|consen 514 F--RRAETSGRSSFASN 528 (932)
T ss_pred H--HHHHhcccchhHHH
Confidence 2 23334456655443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00025 Score=56.32 Aligned_cols=126 Identities=13% Similarity=0.109 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPD--VVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA--ATYRMMVD 364 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~ 364 (491)
|..++..+ ..++...+...++.+.+....-. ....-.+...+...|++++|...|+.+......++. .....+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33344433 35666666666776666533311 122333445666677777777777777665422221 12333455
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 041882 365 GFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEM 417 (491)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 417 (491)
.+...|++++|+..++...... .....+....++|.+.|++++|...|+..
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6667777777777775533222 23445556667777777777777777653
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.7e-06 Score=46.44 Aligned_cols=33 Identities=36% Similarity=0.591 Sum_probs=25.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 041882 393 TFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFD 425 (491)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 425 (491)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577778888888888888888888887777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00036 Score=55.36 Aligned_cols=21 Identities=10% Similarity=0.003 Sum_probs=9.5
Q ss_pred HHHHhcCCHHHHHHHHHHhhh
Q 041882 119 QHYGKAHLVDKAIEVFNRMTS 139 (491)
Q Consensus 119 ~~~~~~~~~~~a~~~~~~~~~ 139 (491)
..+...|++++|...|+.+..
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHh
Confidence 334444444444444444444
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.04 E-value=9.9e-06 Score=45.84 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=22.6
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 041882 392 ETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRF 424 (491)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 424 (491)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356677777777777777777777777666665
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.2e-05 Score=45.80 Aligned_cols=33 Identities=42% Similarity=0.856 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 041882 218 TYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPN 250 (491)
Q Consensus 218 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 250 (491)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0002 Score=66.31 Aligned_cols=124 Identities=15% Similarity=0.173 Sum_probs=89.7
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhc
Q 041882 211 EVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK--GTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVN 288 (491)
Q Consensus 211 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 288 (491)
+.+.+......++..+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.+..+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556667777777777777777788877777655 2222234456788888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKE 334 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 334 (491)
++.|++.+.+.|++..|.++...|...+...+..++...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888777776666666666666555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00016 Score=66.87 Aligned_cols=118 Identities=14% Similarity=0.213 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHHC--CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 041882 145 TLQSFNSLLDILVDNDRVDDAKRMFDDADKM--GFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSL 222 (491)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 222 (491)
+......++..+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.++.+++.=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444444555555555555555555555443 11111223345555555555555555555555555555555555555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 041882 223 IGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLC 262 (491)
Q Consensus 223 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 262 (491)
|..+.+.|++..|.++...|...+...+..|+...+.+|.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 5555555555555555555554444444444444444333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.4e-05 Score=45.24 Aligned_cols=31 Identities=32% Similarity=0.567 Sum_probs=14.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041882 218 TYNSLIGFLCRTGEMGKAKGLFEDMIKKGTY 248 (491)
Q Consensus 218 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 248 (491)
+|+.++.+|++.|+++.|.++|++|.+.|+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 4444444444444444444444444444443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0056 Score=53.10 Aligned_cols=56 Identities=14% Similarity=-0.011 Sum_probs=27.4
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCcCHHH---HHHHHHHHHhCCChhhHHHHHHHHHHC
Q 041882 119 QHYGKAHLVDKAIEVFNRMTSFDCVRTLQS---FNSLLDILVDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 119 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~ 175 (491)
..+...|++++|++.|+++....+. +... .-.++.++.+.+++++|...+++..+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3334455566666665555544321 1111 123445555555666666666555554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00041 Score=50.13 Aligned_cols=77 Identities=12% Similarity=0.191 Sum_probs=49.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHcCC--------CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041882 362 MVDGFLRVEDFEGSLKVLNAMLTSRH-CPRLETFSCLLVGLLKGG--------KVDDACFVLEEMEKRKMRFDLKAWEGL 432 (491)
Q Consensus 362 li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~l 432 (491)
.|..|...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34445555666666666666666666 566666666666655431 234556777777777778888888877
Q ss_pred HHHHHh
Q 041882 433 VTDACI 438 (491)
Q Consensus 433 l~~~~~ 438 (491)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 776543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.039 Score=53.69 Aligned_cols=343 Identities=9% Similarity=0.093 Sum_probs=176.6
Q ss_pred hCCCCCCHHhHHH-----HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH--HHHHHHH-HHhhhC
Q 041882 69 QMGSKHSYPSYAS-----LIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLV--DKAIEVF-NRMTSF 140 (491)
Q Consensus 69 ~~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~-~~~~~~ 140 (491)
..|++.+..-|.. ++.-+...+.+..|.++-..+......- ..+|......+.+..+. +++++.. +++...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4566666666644 4566667788888888887776433222 56677777776665322 2222222 222221
Q ss_pred CCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCC----CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 041882 141 DCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGF----RPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTV 216 (491)
Q Consensus 141 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 216 (491)
. .....|..+.+.....|+++-|..+++.=...+- -.+..-+...+.-+.+.|+.+....++-.+... .+.
T Consensus 504 -~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~ 578 (829)
T KOG2280|consen 504 -L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNR 578 (829)
T ss_pred -C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHH
Confidence 1 2345677777777788888888887764222210 012223444555666677777776666665543 111
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH-H----HcCCCCChhcHHH
Q 041882 217 VTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDM-A----YRGCKPQLVNFGV 291 (491)
Q Consensus 217 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~----~~~~~~~~~~~~~ 291 (491)
..+...+ .+...|..+|.+..+.. |..+ +-..|....+...+-.+.-+- . ..+..|+ ...
T Consensus 579 s~l~~~l------~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~ 643 (829)
T KOG2280|consen 579 SSLFMTL------RNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKT 643 (829)
T ss_pred HHHHHHH------HhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHH
Confidence 1222111 23445555555554421 1111 111222222222211111110 0 0111222 222
Q ss_pred HHHHHHhcCC----------hHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 041882 292 LMSDLGKRGK----------IEEAKSLLSEMKKR-QYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYR 360 (491)
Q Consensus 292 ll~~~~~~~~----------~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 360 (491)
...++.+... ...-..+.+.+... +..-...+.+--+.-+...|+..+|.++-.+.+ -||...|.
T Consensus 644 ~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~w 719 (829)
T KOG2280|consen 644 AANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWW 719 (829)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHH
Confidence 2233333222 11112222222221 222233445555666677777777777777665 57777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041882 361 MMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGD 440 (491)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 440 (491)
.-+.+++..+++++-+++-+... .+.-|...+.+|.+.|+.++|.+++-+.... . -...+|.+.|
T Consensus 720 Lk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--~-------ekv~ay~~~~ 784 (829)
T KOG2280|consen 720 LKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--Q-------EKVKAYLRVG 784 (829)
T ss_pred HHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh--H-------HHHHHHHHhc
Confidence 77777777777776655543321 2455667777788888888888877766532 1 2344566667
Q ss_pred CCcchhHHHHH
Q 041882 441 GNAGGLVEIRD 451 (491)
Q Consensus 441 ~~~~~~~~~~~ 451 (491)
+..+|++..-+
T Consensus 785 ~~~eAad~A~~ 795 (829)
T KOG2280|consen 785 DVKEAADLAAE 795 (829)
T ss_pred cHHHHHHHHHH
Confidence 77677666543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00039 Score=50.25 Aligned_cols=71 Identities=20% Similarity=0.373 Sum_probs=34.4
Q ss_pred HhcCCHhHHHHHHHHHHHcCC-CCChhcHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 041882 262 CFKGEYNEAKKMMFDMAYRGC-KPQLVNFGVLMSDLGKRG--------KIEEAKSLLSEMKKRQYKPDVVTYNILINYLC 332 (491)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 332 (491)
...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ++-....+|+.|...+++|+..+|+.++..+.
T Consensus 36 ~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 36 FENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred HhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 333555555555555555555 455555555554444321 12234445555555555555555555554443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.027 Score=50.80 Aligned_cols=140 Identities=19% Similarity=0.221 Sum_probs=95.9
Q ss_pred hcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041882 287 VNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGF 366 (491)
Q Consensus 287 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 366 (491)
.+.+..+.-+...|+...|.++-.+.. + |+...|...+.+++..++|++..++... +-++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 345555666777888888877766553 2 5888899999999999999887775432 23457788889999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchh
Q 041882 367 LRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGL 446 (491)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 446 (491)
...|+..+|..+..++ + +..-+..|.+.|++.+|.+.--+.. |...+..+.. .|..++....+
T Consensus 248 ~~~~~~~eA~~yI~k~------~----~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~-~~~~~~~~~~~ 310 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI------P----DEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILK-RCPGNNDQLIA 310 (319)
T ss_pred HHCCCHHHHHHHHHhC------C----hHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHH-HCCCCChHHHH
Confidence 9999999988887761 1 2456777889999999887655444 4455555554 23333333333
Q ss_pred HHHHHHh
Q 041882 447 VEIRDMR 453 (491)
Q Consensus 447 ~~~~~m~ 453 (491)
..++.|.
T Consensus 311 ~~i~~~~ 317 (319)
T PF04840_consen 311 DKIEQML 317 (319)
T ss_pred HHHHHHH
Confidence 4556554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00071 Score=48.85 Aligned_cols=94 Identities=18% Similarity=0.142 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 041882 324 YNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLK 403 (491)
Q Consensus 324 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 403 (491)
+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...... +.+...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3444555556666666666666665532 2233455555566666666666666666666543 2233455666666666
Q ss_pred CCCHHHHHHHHHHHHH
Q 041882 404 GGKVDDACFVLEEMEK 419 (491)
Q Consensus 404 ~g~~~~a~~~~~~~~~ 419 (491)
.|++++|...++...+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6777777666666553
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0017 Score=49.44 Aligned_cols=98 Identities=13% Similarity=0.079 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHhHHHHH
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIGGC--KPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHC--PRLETFSCLL 398 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 398 (491)
++..++..+.+.|++++|.+.+..+....- ......+..+..++...|+++.|...|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455556666777777777766654320 011234445566666677777777777766654211 1234455666
Q ss_pred HHHHcCCCHHHHHHHHHHHHHC
Q 041882 399 VGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 399 ~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
.++...|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666777777777777776654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0006 Score=49.26 Aligned_cols=87 Identities=13% Similarity=0.181 Sum_probs=34.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChh
Q 041882 84 YKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVD 163 (491)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 163 (491)
..+...|+++.|...++.+.+.. +.+...+..+...+...+++++|.+.|+....... .+..++..+...+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHhHH
Confidence 33334444444444444443332 22223333344444444444444444444333221 12233333444444444444
Q ss_pred hHHHHHHHH
Q 041882 164 DAKRMFDDA 172 (491)
Q Consensus 164 ~a~~~~~~~ 172 (491)
.|...+...
T Consensus 86 ~a~~~~~~~ 94 (100)
T cd00189 86 EALEAYEKA 94 (100)
T ss_pred HHHHHHHHH
Confidence 444444333
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.019 Score=48.46 Aligned_cols=131 Identities=18% Similarity=0.230 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHH-----
Q 041882 114 FISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMI----- 188 (491)
Q Consensus 114 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll----- 188 (491)
-+.++....-.|.+.-...++.++.+.+.+.++.....|++.-.+.|+.+.|...|++..+..-+.|..+++.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344455555556666666666666665555566666666666666677666666666655443333433333332
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041882 189 KGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK 245 (491)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 245 (491)
..+.-.+++..|...++++...+.. |+...|.-.-+..-.|+..+|++.++.|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2344455666666666666655332 4444444444444456666666666666654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0013 Score=50.04 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=7.1
Q ss_pred HHHHHhCCChhhHHHHHHH
Q 041882 153 LDILVDNDRVDDAKRMFDD 171 (491)
Q Consensus 153 l~~~~~~~~~~~a~~~~~~ 171 (491)
..++...|+++.|...|+.
T Consensus 46 ~~~~~~~~~~~~A~~~~~~ 64 (119)
T TIGR02795 46 GEAYYAQGKYADAAKAFLA 64 (119)
T ss_pred HHHHHhhccHHHHHHHHHH
Confidence 3333333333333333333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.70 E-value=6.3e-05 Score=41.35 Aligned_cols=29 Identities=34% Similarity=0.587 Sum_probs=19.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 041882 393 TFSCLLVGLLKGGKVDDACFVLEEMEKRK 421 (491)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 421 (491)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56667777777777777777777776655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00091 Score=61.85 Aligned_cols=89 Identities=12% Similarity=0.093 Sum_probs=45.3
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhh
Q 041882 85 KLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDD 164 (491)
Q Consensus 85 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 164 (491)
.+...|+++.|.+.|+.+.+.. +.+...+..+..++...|++++|+..+++....+. .+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHH
Confidence 3344455555555555555444 33444555555555555555555555555544432 244455555555555555555
Q ss_pred HHHHHHHHHHC
Q 041882 165 AKRMFDDADKM 175 (491)
Q Consensus 165 a~~~~~~~~~~ 175 (491)
|+..|++..+.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 55555555543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0014 Score=60.61 Aligned_cols=92 Identities=10% Similarity=0.042 Sum_probs=59.8
Q ss_pred HHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 48 VNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLV 127 (491)
Q Consensus 48 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 127 (491)
...+...|+++.|+..|+++++.. +.+...|..+..++.+.|++++|...++.+.... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 344555667777777777766654 3455566666666667777777777777766665 44566666666667777777
Q ss_pred HHHHHHHHHhhhCC
Q 041882 128 DKAIEVFNRMTSFD 141 (491)
Q Consensus 128 ~~a~~~~~~~~~~~ 141 (491)
++|+..|++....+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777766654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.017 Score=50.06 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=27.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhhH---HHHHHHHHhcCChhHHHHHHHHHHHc
Q 041882 190 GRLKKGEWEEASRVFDEMLEREVPPTVVTY---NSLIGFLCRTGEMGKAKGLFEDMIKK 245 (491)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~ 245 (491)
.+...|++++|.+.|+.+...... +.... -.++.++.+.+++++|...+++..+.
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344455666666666555553221 11111 23344555566666666666655554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0001 Score=52.19 Aligned_cols=81 Identities=9% Similarity=0.128 Sum_probs=38.6
Q ss_pred cCChHHHHHHHHHhhhCCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041882 54 IRDPDEALSLFHRHHQMGSK-HSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIE 132 (491)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 132 (491)
.|+++.|+.+|+++.+.... ++...+-.+..++.+.|++++|.++++. .+.+ +.+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35556666666665543321 1233333455555566666666666655 2222 1122333344555555666666665
Q ss_pred HHHH
Q 041882 133 VFNR 136 (491)
Q Consensus 133 ~~~~ 136 (491)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.66 E-value=7.2e-05 Score=41.13 Aligned_cols=28 Identities=39% Similarity=0.749 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041882 218 TYNSLIGFLCRTGEMGKAKGLFEDMIKK 245 (491)
Q Consensus 218 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 245 (491)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0016 Score=58.01 Aligned_cols=130 Identities=13% Similarity=0.103 Sum_probs=66.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041882 183 SFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGF-LCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGL 261 (491)
Q Consensus 183 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 261 (491)
+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|...... |...++.+.|..+|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555666666666666666666665432 1233344443333 22244555566666666554 333555555556666
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCC---hhcHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 041882 262 CFKGEYNEAKKMMFDMAYRGCKPQ---LVNFGVLMSDLGKRGKIEEAKSLLSEMKKR 315 (491)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 315 (491)
...++.+.|..+|++.... +.++ ...|...++.-.+.|+.+.+..+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666665544 1111 125555555555666666666666555553
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00014 Score=51.51 Aligned_cols=80 Identities=21% Similarity=0.235 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHH
Q 041882 335 DRAAEAYKVLTEMQIGGCK-PNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFV 413 (491)
Q Consensus 335 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 413 (491)
|+++.|+.+++++.+..-. ++...+..+..++.+.|++++|..++++ .+.+. .+......+..+|.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555543210 1223333345555556666666665555 22111 1223333345555566666666655
Q ss_pred HHH
Q 041882 414 LEE 416 (491)
Q Consensus 414 ~~~ 416 (491)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0013 Score=51.35 Aligned_cols=90 Identities=11% Similarity=0.135 Sum_probs=46.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCCh
Q 041882 83 IYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRV 162 (491)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 162 (491)
...+...|++++|.++|+.+.... +.+..-|-.|.-++-..|++++|+..|......++ .++..+-.+..++...|+.
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence 334445555555555555555544 33444445555555555555555555555544442 2445555555555555555
Q ss_pred hhHHHHHHHHHH
Q 041882 163 DDAKRMFDDADK 174 (491)
Q Consensus 163 ~~a~~~~~~~~~ 174 (491)
+.|.+.|+..+.
T Consensus 120 ~~A~~aF~~Ai~ 131 (157)
T PRK15363 120 CYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0015 Score=58.08 Aligned_cols=128 Identities=17% Similarity=0.244 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQH-YGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDIL 156 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 156 (491)
+|..++..+-+.+..+.|+.+|....+.+ ..+..+|...... +...++.+.|..+|+...+. ...+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444444444444555555555554322 2222333332222 11123344455555544432 122444444444444
Q ss_pred HhCCChhhHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041882 157 VDNDRVDDAKRMFDDADKMGFRPNL----ISFNVMIKGRLKKGEWEEASRVFDEMLE 209 (491)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 209 (491)
...++.+.|..+|++.... .|.. ..|...+..=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555555555544433 1111 2444444444444444444444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0022 Score=50.13 Aligned_cols=94 Identities=10% Similarity=0.038 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 041882 115 ISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKK 194 (491)
Q Consensus 115 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 194 (491)
-.+...+...|++++|..+|+-+...++. +..-|-.|..++-..|++.+|+..|.......+ -|...+-.+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 34444455666677776666666665532 555666666666666666666666666665542 2455566666666666
Q ss_pred CChHHHHHHHHHHHhC
Q 041882 195 GEWEEASRVFDEMLER 210 (491)
Q Consensus 195 ~~~~~a~~~~~~~~~~ 210 (491)
|+.+.|.+.|+..+..
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6666666666665543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0018 Score=52.97 Aligned_cols=81 Identities=10% Similarity=-0.037 Sum_probs=48.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHH
Q 041882 76 YPSYASLIYKLARARDFDAVETVLGYIQDFNIRC--KETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLL 153 (491)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 153 (491)
...+..+...+...|++++|...++........+ ...++..+...+...|++++|+..+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445556666666777777777777766543221 22456666777777777777777777766543 22344455555
Q ss_pred HHHH
Q 041882 154 DILV 157 (491)
Q Consensus 154 ~~~~ 157 (491)
.++.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.033 Score=50.28 Aligned_cols=169 Identities=14% Similarity=0.052 Sum_probs=98.5
Q ss_pred CCHHhHHHHH-HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH---
Q 041882 179 PNLISFNVMI-KGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTY--- 254 (491)
Q Consensus 179 p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--- 254 (491)
|...++..+- .++.-.|++++|.++--...+.+.. +......-..++.-.++.+.|...|++.+..+. +...-
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp--dh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDP--DHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccCh--hhhhHHhH
Confidence 3334444332 3455678888888777666665322 333322233345567788888888888776532 22111
Q ss_pred HHH----------HHHHHhcCCHhHHHHHHHHHHHc---CCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 041882 255 ALL----------MEGLCFKGEYNEAKKMMFDMAYR---GCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDV 321 (491)
Q Consensus 255 ~~l----------l~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 321 (491)
... ..-..+.|++..|.+.|.+.+.. +..++...|.....+..+.|+.++|+.--+...+.+.. -.
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yi 321 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YI 321 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HH
Confidence 111 12235678888888888887754 23444555666666677788888888887777764211 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041882 322 VTYNILINYLCKEDRAAEAYKVLTEMQIGG 351 (491)
Q Consensus 322 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 351 (491)
..|..-..++.-.+++++|.+-+++..+..
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 122222334455678888888888776543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0057 Score=50.16 Aligned_cols=82 Identities=17% Similarity=0.136 Sum_probs=34.1
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 041882 149 FNSLLDILVDNDRVDDAKRMFDDADKMGFRPN--LISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFL 226 (491)
Q Consensus 149 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 226 (491)
+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+.... +...+..+..++
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 34444444444444444444444443221111 123444444444555555555555444443211 233344444444
Q ss_pred HhcCC
Q 041882 227 CRTGE 231 (491)
Q Consensus 227 ~~~~~ 231 (491)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.014 Score=52.26 Aligned_cols=131 Identities=15% Similarity=0.143 Sum_probs=70.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHH
Q 041882 294 SDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKE-DRAAEAYKVLTEMQIG----GCKPN--AATYRMMVDGF 366 (491)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~ 366 (491)
..|...|++..|-..+..+- ..|... |++++|++.|++..+. + .+. ...+..+...+
T Consensus 102 ~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHH
Confidence 34555555555554444433 334444 6667777666665432 2 111 23445566677
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-----CHH-hHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHH
Q 041882 367 LRVEDFEGSLKVLNAMLTSRHCP-----RLE-TFSCLLVGLLKGGKVDDACFVLEEMEKR--KMRFD--LKAWEGLVTDA 436 (491)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~-----~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~--~~~~~~ll~~~ 436 (491)
.+.|++++|.++|++........ +.. .+...+-++...|+...|.+.+++.... ++..+ ......|+.+
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A- 244 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA- 244 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH-
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH-
Confidence 78888888888888877653221 111 2333444566778888888888887744 23222 4566677775
Q ss_pred HhcCC
Q 041882 437 CIGDG 441 (491)
Q Consensus 437 ~~~~~ 441 (491)
+..++
T Consensus 245 ~~~~D 249 (282)
T PF14938_consen 245 YEEGD 249 (282)
T ss_dssp HHTT-
T ss_pred HHhCC
Confidence 55555
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0021 Score=52.75 Aligned_cols=32 Identities=25% Similarity=0.294 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 041882 198 EEASRVFDEMLEREVPPTVVTYNSLIGFLCRT 229 (491)
Q Consensus 198 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 229 (491)
+-|++++++|...|+-||..++..++..+.+.
T Consensus 120 ~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 120 ECAIDLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 34555555555555555555555555555433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.014 Score=56.63 Aligned_cols=143 Identities=10% Similarity=-0.057 Sum_probs=94.2
Q ss_pred CCCChhcHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 041882 282 CKPQLVNFGVLMSDLGKR-----GKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKE--------DRAAEAYKVLTEMQ 348 (491)
Q Consensus 282 ~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~~~a~~~~~~~~ 348 (491)
.+.+...|...+++.... ++...|..+|++..+..+. ....|..+..++... ++...+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 355667777777665432 2266788888888876544 444555444433321 12234444444433
Q ss_pred hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 041882 349 IG-GCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLK 427 (491)
Q Consensus 349 ~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 427 (491)
.. ..+.+...|..+.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++.... .|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCc
Confidence 32 124455677777666667899999999999999865 67888899999999999999999999998864 44444
Q ss_pred HH
Q 041882 428 AW 429 (491)
Q Consensus 428 ~~ 429 (491)
+|
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 44
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0068 Score=49.69 Aligned_cols=61 Identities=11% Similarity=0.025 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc--CHHHHHHHHHHHHhCCChhhHHHHHHHHHH
Q 041882 114 FISLIQHYGKAHLVDKAIEVFNRMTSFDCVR--TLQSFNSLLDILVDNDRVDDAKRMFDDADK 174 (491)
Q Consensus 114 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 174 (491)
+..+...+...|++++|...|++.......+ ....+..+..++...|++++|...+.+..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444444444444322111 123444444555555555555555554444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0015 Score=56.11 Aligned_cols=84 Identities=17% Similarity=0.156 Sum_probs=37.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 041882 298 KRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPN-AATYRMMVDGFLRVEDFEGSL 376 (491)
Q Consensus 298 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~ 376 (491)
+.+++.+|+..|.+.++..+. |.+-|..-..+|.+.|.++.|++-.+..+.. .|. ..+|..|..+|...|++++|+
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHHH
Confidence 344444444444444444333 4444444444444444444444444444332 222 234444444444444444444
Q ss_pred HHHHHHHh
Q 041882 377 KVLNAMLT 384 (491)
Q Consensus 377 ~~~~~~~~ 384 (491)
+.|++.++
T Consensus 170 ~aykKaLe 177 (304)
T KOG0553|consen 170 EAYKKALE 177 (304)
T ss_pred HHHHhhhc
Confidence 44444444
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.066 Score=48.37 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041882 322 VTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGL 401 (491)
Q Consensus 322 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 401 (491)
.+.+..+.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-..+... .-++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 355666777788899999999887775 68999999999999999999987775432 23457899999999
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHH
Q 041882 402 LKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRD 451 (491)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 451 (491)
.+.|+..+|..++.++.. ..-+..|.+.|++.+|.+...+
T Consensus 248 ~~~~~~~eA~~yI~k~~~----------~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIPD----------EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhCCh----------HHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999887331 3345567888888888877654
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0051 Score=50.26 Aligned_cols=94 Identities=13% Similarity=-0.022 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc--CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHH
Q 041882 111 ETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVR--TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMI 188 (491)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll 188 (491)
...+..+...+...|++++|+..|++.......+ ...+|..+..++...|++++|+..+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4556666777777788888888888776543222 23467777777888888888888887777642 22234444455
Q ss_pred HHHH-------hcCChHHHHHHHH
Q 041882 189 KGRL-------KKGEWEEASRVFD 205 (491)
Q Consensus 189 ~~~~-------~~~~~~~a~~~~~ 205 (491)
..+. ..|+++.|+..++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 4554 5555554444443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.08 Score=48.60 Aligned_cols=137 Identities=10% Similarity=0.046 Sum_probs=83.9
Q ss_pred HhhhcCChHHHHHHHHHhhhCCCCCCHHh------HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH--H
Q 041882 50 DLKEIRDPDEALSLFHRHHQMGSKHSYPS------YASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQH--Y 121 (491)
Q Consensus 50 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~ 121 (491)
.+.++++.++|..+|.+..+.- ..++.. -+.++.++.. .+.+.....+....+.. +. ..|-.+..+ +
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~-~~--s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF-GK--SAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc-CC--chHHHHHHHHHH
Confidence 3567889999999998877542 223222 2455566544 36666666666666543 22 223333322 3
Q ss_pred HhcCCHHHHHHHHHHhhhC--CCCc------------CHHHHHHHHHHHHhCCChhhHHHHHHHHHHC----CCCCCHHh
Q 041882 122 GKAHLVDKAIEVFNRMTSF--DCVR------------TLQSFNSLLDILVDNDRVDDAKRMFDDADKM----GFRPNLIS 183 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~ 183 (491)
-+.+.+.+|++.+....+. +..+ |...=+..+.++...|++.++..+++++... ....+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 5778888888887766543 2111 1122256677888899999999988887654 23467788
Q ss_pred HHHHHHHH
Q 041882 184 FNVMIKGR 191 (491)
Q Consensus 184 ~~~ll~~~ 191 (491)
|+.++-.+
T Consensus 170 yd~~vlml 177 (549)
T PF07079_consen 170 YDRAVLML 177 (549)
T ss_pred HHHHHHHH
Confidence 87754443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0089 Score=51.80 Aligned_cols=116 Identities=8% Similarity=0.049 Sum_probs=66.6
Q ss_pred hHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHH
Q 041882 57 PDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA---HLVDKAIEV 133 (491)
Q Consensus 57 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~ 133 (491)
++....-++...+.+ +-|...|-.|..+|...|+++.|...|....+.. +.++..+..+..++... ....++..+
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 334444444444433 4556666666666666666666666666666654 45555555555554332 234456666
Q ss_pred HHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC
Q 041882 134 FNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 175 (491)
|+++...+.. |+.+...|...+...|++.+|...|+.|.+.
T Consensus 216 l~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 216 LRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6666665532 5555666666666666666666666666654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0019 Score=53.00 Aligned_cols=87 Identities=20% Similarity=0.216 Sum_probs=46.0
Q ss_pred CHHhHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----------------cCChhHHHHH
Q 041882 180 NLISFNVMIKGRLKK-----GEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCR----------------TGEMGKAKGL 238 (491)
Q Consensus 180 ~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----------------~~~~~~a~~~ 238 (491)
+..+|..+++.|.+. |..+-....+..|.+-|+..|..+|+.|++.+=+ -.+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 444444444444422 3444444444555555555555555555544322 1234556666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 041882 239 FEDMIKKGTYPNAVTYALLMEGLCFKGE 266 (491)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 266 (491)
+++|...|+.||..++..++..+++.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 6666666666666666666666655543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.012 Score=52.66 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 041882 79 YASLIYKLARARDFDAVETVLGYIQ 103 (491)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~~~ 103 (491)
|......|...+++++|.+.|....
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHH
Confidence 3444455666677777777776554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.012 Score=51.14 Aligned_cols=122 Identities=11% Similarity=0.061 Sum_probs=91.4
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhC
Q 041882 309 LSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRV---EDFEGSLKVLNAMLTS 385 (491)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~ 385 (491)
++.-...++. |...|-.|..+|...|+++.|..-|.+..+.. ++|...+..+..++... ....++..+|++++..
T Consensus 145 Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 145 LETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred HHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 3333444455 88899999999999999999999999987753 56677777777765543 3456788999999886
Q ss_pred CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041882 386 RHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTD 435 (491)
Q Consensus 386 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 435 (491)
. +-|+.....|...+...|++.+|...|+.|.+. -|....+..+|..
T Consensus 223 D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~ 269 (287)
T COG4235 223 D-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIER 269 (287)
T ss_pred C-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHH
Confidence 4 346777788888899999999999999999975 3344455556553
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00078 Score=45.28 Aligned_cols=52 Identities=23% Similarity=0.208 Sum_probs=26.9
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 041882 88 RARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSF 140 (491)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 140 (491)
..|++++|.++|+.+.... |.+..+...+..+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455555555555555443 334555555555555555555555555555443
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.011 Score=44.51 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=25.7
Q ss_pred hhcCChHHHHHHHHHhhhCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041882 52 KEIRDPDEALSLFHRHHQMGSKHS--YPSYASLIYKLARARDFDAVETVLGYIQD 104 (491)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 104 (491)
-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++....
T Consensus 12 d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 12 DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555555443332 22333444445555555555555555443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0028 Score=54.54 Aligned_cols=105 Identities=13% Similarity=0.156 Sum_probs=78.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCCh
Q 041882 83 IYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRV 162 (491)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 162 (491)
..-+.+.++|.+|+..|...+... +-|...|..-..+|.+.|.++.|++-.+.....+.. ...+|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcH
Confidence 345667788888888888888876 567777888888888888888888887777776522 557888888888888888
Q ss_pred hhHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 041882 163 DDAKRMFDDADKMGFRPNLISFNVMIKGR 191 (491)
Q Consensus 163 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 191 (491)
.+|++.|++.++. .|+-.+|-.=+...
T Consensus 166 ~~A~~aykKaLel--dP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 166 EEAIEAYKKALEL--DPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHhhhcc--CCCcHHHHHHHHHH
Confidence 8888888877764 67766665555443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.15 Score=49.41 Aligned_cols=139 Identities=12% Similarity=0.058 Sum_probs=77.4
Q ss_pred hhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-cCCC--------CCHHHHHHHHHHH
Q 041882 51 LKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQD-FNIR--------CKETLFISLIQHY 121 (491)
Q Consensus 51 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~--------~~~~~~~~l~~~~ 121 (491)
|...=..++|.++.+ -.|.+..|..+.......-.++.|...|-+... .|++ .+...-.+=+.
T Consensus 673 Lve~vgledA~qfiE------dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~-- 744 (1189)
T KOG2041|consen 673 LVEAVGLEDAIQFIE------DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS-- 744 (1189)
T ss_pred HHHHhchHHHHHHHh------cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--
Confidence 344444556666554 257788899998888888888888887765543 2221 11111111122
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCChHHH
Q 041882 122 GKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM-GFRPNLISFNVMIKGRLKKGEWEEA 200 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a 200 (491)
+--|++++|++++-++-.++. .|..+.+.|+|-.+.++++.--.. .-.--...|+.+...++....|++|
T Consensus 745 ~~~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A 815 (1189)
T KOG2041|consen 745 AFYGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEA 815 (1189)
T ss_pred hhhcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334889999999887765432 345555666666666655431100 0000124555566666666666666
Q ss_pred HHHHHH
Q 041882 201 SRVFDE 206 (491)
Q Consensus 201 ~~~~~~ 206 (491)
.+.|..
T Consensus 816 ~~yY~~ 821 (1189)
T KOG2041|consen 816 AKYYSY 821 (1189)
T ss_pred HHHHHh
Confidence 665543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.019 Score=43.22 Aligned_cols=92 Identities=15% Similarity=0.066 Sum_probs=50.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHhHHHHHHHHH
Q 041882 327 LINYLCKEDRAAEAYKVLTEMQIGGCKPN--AATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHC--PRLETFSCLLVGLL 402 (491)
Q Consensus 327 li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 402 (491)
+..++-..|+.++|+.+|++..+.|.... ...+..+..++...|++++|..++++....... .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455556666777777776666654433 224445555666667777777777666654211 01222223334556
Q ss_pred cCCCHHHHHHHHHHHH
Q 041882 403 KGGKVDDACFVLEEME 418 (491)
Q Consensus 403 ~~g~~~~a~~~~~~~~ 418 (491)
..|+.++|+..+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6677777666665544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.023 Score=55.13 Aligned_cols=138 Identities=10% Similarity=0.064 Sum_probs=91.2
Q ss_pred CCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCC--------ChhhHHHHHHHHH
Q 041882 107 IRCKETLFISLIQHYGKA-----HLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDND--------RVDDAKRMFDDAD 173 (491)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~ 173 (491)
.+.+...|...+++.... +....|..+|++..+.++. ....|..+..++.... +...+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 366777777777775432 2366788888888876522 4455555444333221 1234444444433
Q ss_pred HC-CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041882 174 KM-GFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGT 247 (491)
Q Consensus 174 ~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 247 (491)
.. ....+...|..+.-.....|++++|...+++..+.+ |+...|..+...+...|++++|.+.|++......
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 32 123345667766666667789999999999988875 5778888889999999999999999988877643
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0011 Score=44.63 Aligned_cols=64 Identities=25% Similarity=0.314 Sum_probs=39.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041882 367 LRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLV 433 (491)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 433 (491)
...|++++|+++|+++.... +.+...+..++.+|.+.|++++|..+++++... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 34567777777777776653 235666666777777777777777777777754 44544444443
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.006 Score=54.76 Aligned_cols=132 Identities=11% Similarity=-0.035 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHH----cCCC-CChhcHHHHHHHHHhcCChHHHHHHHHHHHH----cCC-CCCHH
Q 041882 253 TYALLMEGLCFKGEYNEAKKMMFDMAY----RGCK-PQLVNFGVLMSDLGKRGKIEEAKSLLSEMKK----RQY-KPDVV 322 (491)
Q Consensus 253 ~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~ 322 (491)
.|..+-..|.-.|+++.|+...+.-.. .|-. .....+..+..++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455566666667778887766544322 2211 1234566677777777888888887775432 211 11233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIG-----GCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
+.-.|..+|.-..++.+|+.++.+-..- ...-....+.++..++...|..++|+.+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4455666776667777887776653321 1123445677788888888888888877766554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.04 Score=46.53 Aligned_cols=49 Identities=10% Similarity=0.122 Sum_probs=26.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHcCCCHHHH
Q 041882 362 MVDGFLRVEDFEGSLKVLNAMLTSR--HCPRLETFSCLLVGLLKGGKVDDA 410 (491)
Q Consensus 362 li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a 410 (491)
+..-|.+.|.+..|..-++.+++.- ..........++.+|.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 3455666677777777777666651 111123445556666666666643
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.065 Score=42.90 Aligned_cols=132 Identities=14% Similarity=0.101 Sum_probs=87.2
Q ss_pred CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHH
Q 041882 283 KPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGG---CKPNAATY 359 (491)
Q Consensus 283 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~ 359 (491)
.|+...--.|..+....|+..+|...|++...--..-|....-.+.++....+++..|...++++.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 455555556677777778888888888777664444566777777777777788888888887776642 1233 33
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 360 RMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 360 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
-.+.+.+...|.+..|+..|+..... -|+...-......+.++|+.+++..-+..+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 44566777778888888888887774 3555444445556677777776665544444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.15 Score=46.34 Aligned_cols=271 Identities=12% Similarity=0.067 Sum_probs=156.6
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhh
Q 041882 85 KLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDD 164 (491)
Q Consensus 85 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 164 (491)
.+.+..++..|+..+...++.. +.+...|..-...+...+++++|.--.+.-.+.... ......-.-+++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHH
Confidence 4455667777777777777766 445666666666677777777776555544433211 12223333333333344444
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCChhhHHHHH-HHHHhcCChhHHHHHHHHH
Q 041882 165 AKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREV-PPTVVTYNSLI-GFLCRTGEMGKAKGLFEDM 242 (491)
Q Consensus 165 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~ 242 (491)
|.+.++ +...+ ....++..++....... +|.-.+|..+- .++.-.|++++|...--..
T Consensus 136 A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 136 AEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 444443 11111 11222333333222221 23334444332 3566778999998887777
Q ss_pred HHcCCCCCHHHHHHHHH--HHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHH-------------HHHHHhcCChHHHHH
Q 041882 243 IKKGTYPNAVTYALLME--GLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVL-------------MSDLGKRGKIEEAKS 307 (491)
Q Consensus 243 ~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------------l~~~~~~~~~~~a~~ 307 (491)
.+.... +. +...+. ++.-.++.+.+...|.+.+..+ |+...-... ..-..+.|.+..|.+
T Consensus 196 lkld~~-n~--~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 196 LKLDAT-NA--EALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred Hhcccc-hh--HHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 765322 22 333333 3456778889999888887663 443322111 223356788899999
Q ss_pred HHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHH
Q 041882 308 LLSEMKKR---QYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYR---MMVDGFLRVEDFEGSLKVLNA 381 (491)
Q Consensus 308 ~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~ 381 (491)
.|.+.... +.+|+...|.....+..+.|+..+|+.--++... .|..-.. .-..++...++|++|.+.+++
T Consensus 271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888764 3455666777777778888999998888777764 3433222 223456667888999988888
Q ss_pred HHhCC
Q 041882 382 MLTSR 386 (491)
Q Consensus 382 ~~~~~ 386 (491)
..+..
T Consensus 347 a~q~~ 351 (486)
T KOG0550|consen 347 AMQLE 351 (486)
T ss_pred HHhhc
Confidence 88763
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.074 Score=42.60 Aligned_cols=102 Identities=9% Similarity=0.030 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCC-CCCHHhHHHH
Q 041882 109 CKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGF-RPNLISFNVM 187 (491)
Q Consensus 109 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l 187 (491)
|+..-...|.....+.|+..+|...|++...--...|....-.+.++....+++..|...++++-+... .-+..+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 344444445555555555555555555554432333444555555555555555555555555544320 0011223334
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q 041882 188 IKGRLKKGEWEEASRVFDEMLER 210 (491)
Q Consensus 188 l~~~~~~~~~~~a~~~~~~~~~~ 210 (491)
.+.+...|.+.+|+.-|+.....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh
Confidence 45555555555555555555543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.039 Score=46.60 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=28.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 041882 83 IYKLARARDFDAVETVLGYIQDFNI--RCKETLFISLIQHYGKAHLVDKAIEVFNRMTS 139 (491)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 139 (491)
...+...|++.+|.+.|+.+..... +.-....-.++.++-+.|+++.|...+++...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344455666666666666554321 11223344455555566666666666655544
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.15 Score=45.92 Aligned_cols=296 Identities=16% Similarity=0.135 Sum_probs=182.5
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHH--HhCCChhhHHHHHHHHHHCCCCCCHHh--HHHH
Q 041882 114 FISLIQHYG--KAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDIL--VDNDRVDDAKRMFDDADKMGFRPNLIS--FNVM 187 (491)
Q Consensus 114 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~p~~~~--~~~l 187 (491)
|.+|-.++. -.|+-..|.++-.+.... +.-|....-.++.+- .-.|+++.|.+-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 445544443 346777777766554322 122444444454443 3469999999999999863 33322 2233
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHH--
Q 041882 188 IKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKG-TYPNAV--TYALLMEGLC-- 262 (491)
Q Consensus 188 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~ll~~~~-- 262 (491)
.-..-+.|+.+.|.++-+...+.-.. -...+...+...+..|+++.|+++++.-.... +.++.. .-..|+.+-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 33345678888888888887665322 45678888999999999999999998876542 233322 1222222211
Q ss_pred -hcCCHhHHHHHHHHHHHcCCCCChhcH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 263 -FKGEYNEAKKMMFDMAYRGCKPQLVNF-GVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEA 340 (491)
Q Consensus 263 -~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 340 (491)
-..+...|...-.+..+. .||..-- ..-..++.+.|+..++-.+++.+-+..+.|+ ++... .+.+.|+. +
T Consensus 240 ~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~lY--~~ar~gdt--a 311 (531)
T COG3898 240 LLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALLY--VRARSGDT--A 311 (531)
T ss_pred HhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHHH--HHhcCCCc--H
Confidence 122455555554444433 5553322 2334678889999999999999988755444 33322 23445543 3
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc-CCCHHHHHHHHHHH
Q 041882 341 YKVLTEMQIG-GCKP-NAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLK-GGKVDDACFVLEEM 417 (491)
Q Consensus 341 ~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~ 417 (491)
..-+++.... .++| +......+.++-...|++..|..--+.... ..|....|..|.+.-.. .|+-.++..++-+.
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 3323322211 1344 445666777888889999998888777766 45888888888876654 49999999999988
Q ss_pred HHCCCCC
Q 041882 418 EKRKMRF 424 (491)
Q Consensus 418 ~~~~~~~ 424 (491)
.+..-.|
T Consensus 390 v~APrdP 396 (531)
T COG3898 390 VKAPRDP 396 (531)
T ss_pred hcCCCCC
Confidence 8664444
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0036 Score=56.12 Aligned_cols=265 Identities=12% Similarity=0.044 Sum_probs=158.9
Q ss_pred HHhhhcCChHHHHHHHHHhhhCCCCCCHH----hHHHHHHHHHhcCChhHHHHHHHHH--Hh--cCC-CCCHHHHHHHHH
Q 041882 49 NDLKEIRDPDEALSLFHRHHQMGSKHSYP----SYASLIYKLARARDFDAVETVLGYI--QD--FNI-RCKETLFISLIQ 119 (491)
Q Consensus 49 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~--~~--~~~-~~~~~~~~~l~~ 119 (491)
..|++.|+....+.+|+..++-| ..|.. +|..|..+|.-.+++++|++....= .. .|- .-.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 45889999999999999999887 33433 4666677777888999998876421 11 110 011233445666
Q ss_pred HHHhcCCHHHHHHHHHHh----hhCCC-CcCHHHHHHHHHHHHhCCC--------------------hhhHHHHHHHHHH
Q 041882 120 HYGKAHLVDKAIEVFNRM----TSFDC-VRTLQSFNSLLDILVDNDR--------------------VDDAKRMFDDADK 174 (491)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~ 174 (491)
.+--.|.+++|+..-.+- .+.|- .....++-.+..+|...|. ++.|.++|.+=.+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 666678888876543221 22210 1123455556666665543 2233333332111
Q ss_pred ----CCC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHh----CCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041882 175 ----MGF-RPNLISFNVMIKGRLKKGEWEEASRVFDEMLE----REVP-PTVVTYNSLIGFLCRTGEMGKAKGLFEDMIK 244 (491)
Q Consensus 175 ----~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 244 (491)
.|- ..--..|..|-..|.-.|+++.|+...+.-.+ -|-. .-...+..+..++.-.|+++.|.+.|+.-..
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 110 01123455555666667888888877655322 2211 1344677788888888999999988887543
Q ss_pred c----CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-----CCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041882 245 K----GT-YPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR-----GCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKK 314 (491)
Q Consensus 245 ~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 314 (491)
. |- .....+..++..+|.-..++..|+.++.+-... ...-....+.+|..+|...|..+.|..+.+...+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2 21 223445566777777778888888887665432 1123356677888888888888888877665443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.002 Score=43.45 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=32.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhh
Q 041882 77 PSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAH-LVDKAIEVFNRMTS 139 (491)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 139 (491)
..|..+...+...|++++|...|+...+.+ +.+...+..+..++...| ++++|++.+++..+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 445555555555555555555555555544 334455555555555555 45555555555443
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0025 Score=42.30 Aligned_cols=53 Identities=23% Similarity=0.216 Sum_probs=23.2
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHH
Q 041882 120 HYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDAD 173 (491)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 173 (491)
.+.+.|++++|+..|+++.+... -+...+..+..++...|++++|...|+++.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444331 134444444444444444444444444443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0021 Score=42.70 Aligned_cols=57 Identities=12% Similarity=0.101 Sum_probs=34.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 041882 83 IYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSF 140 (491)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 140 (491)
...+.+.|++++|.+.|+.+.+.. +.+...+..+..++...|++++|..+|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345556666666666666666655 445566666666666666666666666666543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.22 Score=45.74 Aligned_cols=127 Identities=16% Similarity=0.246 Sum_probs=69.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHH
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQ-YKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATY-RMMVDGF 366 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~ 366 (491)
|...+.+..+...++.|..+|-+..+.+ ..++..++++++..++. |+..-|..+|+--... -||...| ...+.-+
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fL 476 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHH
Confidence 4445555555556666666666666655 44555666666665543 5556666666554332 2333333 2334445
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 367 LRVEDFEGSLKVLNAMLTSRHCPR--LETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
...++-+.|..+|+..++. +..+ ..+|..++..-..-|+...+..+-++|.+
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 5566666666666644443 1112 34566666666666666666666555554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.22 Score=45.59 Aligned_cols=168 Identities=14% Similarity=0.115 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCcCHHHHHHHHHHHHh---CCChhhHHHHHHHHHHCCCCCCHHhH
Q 041882 111 ETLFISLIQHYGKAHLVDKAIEVFNRMTSF---DCVRTLQSFNSLLDILVD---NDRVDDAKRMFDDADKMGFRPNLISF 184 (491)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~ 184 (491)
..+...++-.|....+++..+++.+.+... .+..+...-....-++.+ .|+.++|++++..+....-.++..+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 344445555566666666666666666553 111123333344444445 56666777776664444445566666
Q ss_pred HHHHHHHHh---------cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh----HHHHHH---H-HHHHcCC
Q 041882 185 NVMIKGRLK---------KGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMG----KAKGLF---E-DMIKKGT 247 (491)
Q Consensus 185 ~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~----~a~~~~---~-~~~~~~~ 247 (491)
..+.+.|-. ....+.|...|.+.-+.. |+..+--.++..+...|... +..++- . .+.+.|.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 655554321 123566666666655432 33333223333333333211 122222 1 1112222
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 041882 248 ---YPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 248 ---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (491)
..+-..+.+++.+..-.|+.++|.+..+.|.+.
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 234555677777777888888888888887766
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0044 Score=41.71 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCC-CHHHHHHHHHHHH
Q 041882 358 TYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGG-KVDDACFVLEEME 418 (491)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~ 418 (491)
+|..+...+...|++++|+..|++.++.. +.+...|..+..++...| ++++|.+.+++..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444444455555555555444432 113344444444444444 3455555544444
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.017 Score=50.61 Aligned_cols=96 Identities=11% Similarity=0.093 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHhHHH
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA----ATYRMMVDGFLRVEDFEGSLKVLNAMLTSR--HCPRLETFSC 396 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 396 (491)
.|...+..+.+.|++++|...|+.+... .|+. ..+..+..+|...|++++|...|+.+.+.. -+.....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444444556677777777766654 2322 345556666667777777777777776541 1112334444
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 397 LLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 397 l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
+...+...|+.++|..+|+.+.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555666677777777777776654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.019 Score=45.59 Aligned_cols=69 Identities=23% Similarity=0.358 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHHH
Q 041882 184 FNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIK-----KGTYPNAVT 253 (491)
Q Consensus 184 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 253 (491)
...++..+...|+++.|..+.+.+...... +...|..+|.+|...|+..+|.++|+.+.. .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344555555666666666666666665332 566666666666666666666666666542 256655544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.89 Score=47.31 Aligned_cols=112 Identities=17% Similarity=0.141 Sum_probs=65.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 041882 292 LMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVED 371 (491)
Q Consensus 292 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 371 (491)
.++.--++|-+.+|..++..=.+. -...|.+....+.....+++|.-+|+..-+ ....+.+|..+|+
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~d 980 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEK----QKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGD 980 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhcc
Confidence 333344445555554444321111 223444455555567777777777765421 2234677888888
Q ss_pred HHHHHHHHHHHHhCCCCCCH--HhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 372 FEGSLKVLNAMLTSRHCPRL--ETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 372 ~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
|.+|+.+..++... -+. .+-..|+.-+..++++-+|-++..+...
T Consensus 981 Wr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 981 WREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 88888887776542 121 1225677777788888888888777764
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.012 Score=40.00 Aligned_cols=53 Identities=13% Similarity=0.185 Sum_probs=24.2
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 041882 86 LARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTS 139 (491)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 139 (491)
+.+.++++.|.++++.+...+ |.+...+.....++.+.|++++|.+.|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444444444444443 33444444444444444444444444444443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.067 Score=46.92 Aligned_cols=97 Identities=7% Similarity=0.004 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPD--VVTYNILINYLCKEDRAAEAYKVLTEMQIGG--CKPNAATYRMMVD 364 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~ 364 (491)
|...+..+.+.|++++|...|+.+.+..+... ...+-.+...|...|++++|...|+.+...- -+.....+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333445666666666666655432211 2344555566666666666666666665431 1112233333444
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 041882 365 GFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~ 385 (491)
.+...|+.++|..+|+.+++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 555666666666666666654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.79 Score=45.14 Aligned_cols=340 Identities=10% Similarity=0.053 Sum_probs=169.9
Q ss_pred cCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCC--hhhHHHHHHHHHHCCC
Q 041882 105 FNIRCKETLFI-----SLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDR--VDDAKRMFDDADKMGF 177 (491)
Q Consensus 105 ~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~ 177 (491)
.|++.+..-|. .+++-+...+.+..|+++-..+...-.. ....|......+.+..+ -+++++..++=.....
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 34444444443 3345555666677777666555432111 14455555555555432 1223333322222212
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 041882 178 RPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREV----PPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVT 253 (491)
Q Consensus 178 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 253 (491)
-+...|..+.+.....|+.+.|..+++.=...+. -.+..-+...+.-+...|+.+....++-.+.+.- +...
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~ 580 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSS 580 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHH
Confidence 2344566666666667777777766644222110 0112223344444555555555555555554320 1111
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHH-HHHHH----HcCCCCCHHHHHHHH
Q 041882 254 YALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSL-LSEMK----KRQYKPDVVTYNILI 328 (491)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~----~~~~~~~~~~~~~li 328 (491)
|.. ...+...|..+|.+..+..-. ..+-+.|-...+...+-.+ ++... ..+..|+ .....
T Consensus 581 l~~------~l~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a 645 (829)
T KOG2280|consen 581 LFM------TLRNQPLALSLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAA 645 (829)
T ss_pred HHH------HHHhchhhhHHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHH
Confidence 111 112334455555554442111 0111222222222222111 11111 1122222 22333
Q ss_pred HHHHhcCC----------HHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 041882 329 NYLCKEDR----------AAEAYKVLTEMQIG-GCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCL 397 (491)
Q Consensus 329 ~~~~~~~~----------~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 397 (491)
.++.+... ..+-+.+.+.+... |..-...+.+--+.-+...|+..+|.++-.++. -||-..|-.-
T Consensus 646 ~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk 721 (829)
T KOG2280|consen 646 NAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLK 721 (829)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHH
Confidence 34443322 22223333333222 333444556666777888899999999877664 3888999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCc
Q 041882 398 LVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGT 477 (491)
Q Consensus 398 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~ 477 (491)
+.+++..++|++-+++-+... .+.-|.-.+.++.+.|+..++.+.+-+..... .....|.+.|.
T Consensus 722 ~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~----------ekv~ay~~~~~ 785 (829)
T KOG2280|consen 722 LTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ----------EKVKAYLRVGD 785 (829)
T ss_pred HHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCChH----------HHHHHHHHhcc
Confidence 999999999999777766554 24556678888888888888887775543331 34455666666
Q ss_pred chhhhhH
Q 041882 478 CVVIDLF 484 (491)
Q Consensus 478 ~~~~~~~ 484 (491)
+.+|...
T Consensus 786 ~~eAad~ 792 (829)
T KOG2280|consen 786 VKEAADL 792 (829)
T ss_pred HHHHHHH
Confidence 6665544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.024 Score=44.96 Aligned_cols=73 Identities=16% Similarity=0.274 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHH-----CCCCCCHHhHH
Q 041882 112 TLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADK-----MGFRPNLISFN 185 (491)
Q Consensus 112 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~~~~ 185 (491)
.+...++..+...|+++.|+.+.+.+...++ -+...|..+|.+|...|+...|.+.|+.+.+ .|+.|+..+-.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 3455667777788888888888888877663 3777888888888888888888888887643 37888776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.054 Score=41.29 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=44.0
Q ss_pred CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhc
Q 041882 386 RHCPRLETFSCLLVGLLKGGKVDDACFVLEEME-KRKMRFDLKAWEGLVTDACIG 439 (491)
Q Consensus 386 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~ 439 (491)
...|+..+..+++.+|+..|++..|.++.+.+. ..+++.+...|..|++=....
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 355888999999999999999999999999887 457788889999999843333
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.28 Score=38.91 Aligned_cols=86 Identities=12% Similarity=-0.065 Sum_probs=43.1
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041882 262 CFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAY 341 (491)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 341 (491)
...|++++|..+|..+.-.+ ..+..-+..|..++-..+++++|...|......+.. |+..+-....+|...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHH
Confidence 45555556655555555443 223333444444444555555555555554443322 3333444455555555555555
Q ss_pred HHHHHHHh
Q 041882 342 KVLTEMQI 349 (491)
Q Consensus 342 ~~~~~~~~ 349 (491)
..|....+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55555544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.024 Score=38.58 Aligned_cols=53 Identities=26% Similarity=0.280 Sum_probs=22.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 366 FLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 366 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
+.+.++++.|.++++.++..+ +.+...+.....++...|++++|.+.++...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444444444444432 12333344444444444444444444444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.1 Score=50.09 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------
Q 041882 320 DVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLE------- 392 (491)
Q Consensus 320 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------- 392 (491)
+..+...+...+.+...+.-|-++|.+|-+ ...+++.....++|.+|..+-+..-+. .||..
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHh
Confidence 334444444445555666667777766543 123556666677777777766654442 22221
Q ss_pred ----hHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 393 ----TFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 393 ----~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
-|...-.+|.+.|+..+|.++++++...
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2333445677888888888888887654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.11 Score=41.03 Aligned_cols=87 Identities=10% Similarity=-0.034 Sum_probs=53.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHH
Q 041882 191 RLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEA 270 (491)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 270 (491)
+...|++++|..+|.-+...+.. +..-|..|..++-..+++++|+..|......+.. |+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 44567777777777766655433 5555666666666677777777777665544322 333344455666677777777
Q ss_pred HHHHHHHHH
Q 041882 271 KKMMFDMAY 279 (491)
Q Consensus 271 ~~~~~~~~~ 279 (491)
...|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 776666655
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=1 Score=44.00 Aligned_cols=176 Identities=13% Similarity=0.110 Sum_probs=95.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCc--------CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCC
Q 041882 108 RCKETLFISLIQHYGKAHLVDKAIEVFNRMTSF-DCVR--------TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFR 178 (491)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 178 (491)
.|.+..|..+.......-.++.|+..|-+.... |++. +...-.+=+.+| -|++++|.++|-++.++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 577888888888888878888888887666443 2210 111111122222 378888888887776542
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 041882 179 PNLISFNVMIKGRLKKGEWEEASRVFDEMLER-EVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALL 257 (491)
Q Consensus 179 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 257 (491)
..+..+.+.|+|-.+.++++.--.. +-..-...|+.+...++....|++|.+.|...... ...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence 3455666777777666665431110 00012346777777777777777777777654221 123
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHH
Q 041882 258 MEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSL 308 (491)
Q Consensus 258 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 308 (491)
+.++.+..++++.+.+...+ +.+....-.+.+++...|.-++|.+.
T Consensus 829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a 874 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEA 874 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHH
Confidence 45555555555544443332 22233333444444444444444433
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.062 Score=40.97 Aligned_cols=51 Identities=18% Similarity=0.058 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHhHHHHHHHH
Q 041882 351 GCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS-RHCPRLETFSCLLVGL 401 (491)
Q Consensus 351 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 401 (491)
...|+..+..+++.+|+..+++..|.++.+.+.+. +++.+..+|..|+.=.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35677888888888888888888888888877776 6666677777777533
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.012 Score=40.70 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CC-HHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 358 TYRMMVDGFLRVEDFEGSLKVLNAMLTS----RHC-PR-LETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
+++.+...|...|++++|+..|++.++. |-. |+ ..++..+..++...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555556666666666666666655532 111 11 3455666666777777777777776654
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=1.1 Score=43.35 Aligned_cols=55 Identities=15% Similarity=0.001 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041882 251 AVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKK 314 (491)
Q Consensus 251 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 314 (491)
..+...+..-+-+...+..|.++|..|-.. ..+++.....+++.+|..+-+...+
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 344444444455566677777777766432 3466667777888888777766554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.8 Score=41.54 Aligned_cols=310 Identities=14% Similarity=0.107 Sum_probs=165.3
Q ss_pred CChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHH--hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHH
Q 041882 55 RDPDEALSLFHRHHQMGSKHSYPSYASLIYKLA--RARDFDAVETVLGYIQDFNIRCKETLFISLIQH--YGKAHLVDKA 130 (491)
Q Consensus 55 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a 130 (491)
..+..+.++|..-.+. ..|..|-..+. -.||-..|.++-.+..+. +..|...+..++.+ -.-.|+++.|
T Consensus 67 ~sP~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~A 139 (531)
T COG3898 67 ESPYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDA 139 (531)
T ss_pred hCcHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHH
Confidence 3455555565543321 13444444443 356777777766654432 12333334444433 2346788888
Q ss_pred HHHHHHhhhCCCCcCHHH--HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 041882 131 IEVFNRMTSFDCVRTLQS--FNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEML 208 (491)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 208 (491)
.+-|+.|... |.... ...|.-..-+.|..+.|.++-+..-.... --...+...+...+..|+|+.|+++++.-.
T Consensus 140 r~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 140 RKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 8888888752 22211 22333333456777777777776654421 123556677777788888888888877655
Q ss_pred hCC-CCCChh--hHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 041882 209 ERE-VPPTVV--TYNSLIGFLCR---TGEMGKAKGLFEDMIKKGTYPNAV-TYALLMEGLCFKGEYNEAKKMMFDMAYRG 281 (491)
Q Consensus 209 ~~~-~~~~~~--~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 281 (491)
+.. +.++.. .-..|+.+-.. ..+...|...-.+..+. .||.. .-..-..++.+.|+..++-.+++.+-+..
T Consensus 216 ~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e 293 (531)
T COG3898 216 AAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE 293 (531)
T ss_pred HHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC
Confidence 432 223321 12223322211 23455555555444443 33321 12233466777888888888888777764
Q ss_pred CCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 041882 282 CKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKR-QYKP-DVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATY 359 (491)
Q Consensus 282 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 359 (491)
|.+.... +-.+.+.|+ .+..=+++..+. ..+| +..+...+..+-...|++..|..--+.... ..|....|
T Consensus 294 --PHP~ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~ 365 (531)
T COG3898 294 --PHPDIAL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAY 365 (531)
T ss_pred --CChHHHH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHH
Confidence 3333322 222334444 222223222211 1222 455566666777777777777766655544 36777777
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHhC
Q 041882 360 RMMVDGFL-RVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 360 ~~li~~~~-~~~~~~~a~~~~~~~~~~ 385 (491)
..|.+.-. ..||-.++...+.+.+..
T Consensus 366 lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 366 LLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 66666433 447888888877777764
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.58 Score=39.95 Aligned_cols=139 Identities=15% Similarity=0.006 Sum_probs=80.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-----
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMV----- 363 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li----- 363 (491)
.+.++..+...+.+.-....+.++++....-++.....+++.-.+.|+.+.|...|++..+..-..|..+++.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344555555566666666666666666555566666666666667777777777776554432233333333322
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 041882 364 DGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWE 430 (491)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 430 (491)
..+.-++++..|...+.++...+ +.|+...|.-.-+..-.|+..+|++.++.|.+. .|...+-+
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 23444566667777776666653 234444444444555567777777777777764 34444444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.94 Score=41.91 Aligned_cols=383 Identities=12% Similarity=0.085 Sum_probs=217.5
Q ss_pred HHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 041882 60 ALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTS 139 (491)
Q Consensus 60 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 139 (491)
-+++-+++.+ .+.|..+|-.|+..+..++..++..+++++|..-- +.-+.+|..-+.+-...++++..+.+|.+...
T Consensus 28 ~lrLRerIkd--NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 28 ELRLRERIKD--NPTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHHHhhc--CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 3455555554 36788899999999999999999999999998643 55567788778877778999999999999877
Q ss_pred CCCCcCHHHHHHHHHHHHhCCCh------hhHHHHHHHHHH-CCCCCCH-HhHHHHHHH---HHhcC------ChHHHHH
Q 041882 140 FDCVRTLQSFNSLLDILVDNDRV------DDAKRMFDDADK-MGFRPNL-ISFNVMIKG---RLKKG------EWEEASR 202 (491)
Q Consensus 140 ~~~~~~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~-~~~~p~~-~~~~~ll~~---~~~~~------~~~~a~~ 202 (491)
.. .+...|...+.-..+.+.. ....+.|+-... .++.|-. ..|+..+.. .-..| +++...+
T Consensus 105 k~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~ 182 (660)
T COG5107 105 KS--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRN 182 (660)
T ss_pred hh--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 53 4677777777665554321 122333443333 2444433 344444432 22233 4555666
Q ss_pred HHHHHHhCCCCCChhhHH------HHHHHHHh---cC----ChhHHHHHHHHHHH--cCCCC----CHHHH---------
Q 041882 203 VFDEMLEREVPPTVVTYN------SLIGFLCR---TG----EMGKAKGLFEDMIK--KGTYP----NAVTY--------- 254 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~------~ll~~~~~---~~----~~~~a~~~~~~~~~--~~~~~----~~~~~--------- 254 (491)
.+.++..-.+..=...|+ .=+.-... .| -+-.|...++++.. .|... +..++
T Consensus 183 ~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S 262 (660)
T COG5107 183 GYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDS 262 (660)
T ss_pred HHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccc
Confidence 777776542211111121 11110000 01 12344455554432 12210 11111
Q ss_pred --HHHHH-----------------------------------------HHHhcCCHhHHHHHHHHHHHcCCCCChhcHHH
Q 041882 255 --ALLME-----------------------------------------GLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGV 291 (491)
Q Consensus 255 --~~ll~-----------------------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (491)
...|+ -+...++-..|...... |++-.+...-.
T Consensus 263 ~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~r----g~~~spsL~~~ 338 (660)
T COG5107 263 NWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVER----GIEMSPSLTMF 338 (660)
T ss_pred hhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHh----cccCCCchhee
Confidence 11111 01222333333333222 22222111111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH--------------cCC---------------CCCHHHHHHHHHHHHhcCCHHHHHH
Q 041882 292 LMSDLGKRGKIEEAKSLLSEMKK--------------RQY---------------KPDVVTYNILINYLCKEDRAAEAYK 342 (491)
Q Consensus 292 ll~~~~~~~~~~~a~~~~~~~~~--------------~~~---------------~~~~~~~~~li~~~~~~~~~~~a~~ 342 (491)
+-..|.-.++.+.....|+.... .+. ..-..+|...+.+..+....+.|..
T Consensus 339 lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~ 418 (660)
T COG5107 339 LSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARK 418 (660)
T ss_pred HHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHH
Confidence 22222222333332222222110 001 0123457777887788888999999
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhH-HHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 343 VLTEMQIGG-CKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETF-SCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 343 ~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
+|-++...+ +.++...+++++.-++ .|+...|..+|+--+.. + ||...| ...+..+.+-|+-+.|..+|+....+
T Consensus 419 ~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f-~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 419 LFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-F-PDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred HHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-C-CCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 999999888 5677778888888665 58899999999977765 2 444433 56677788899999999999966653
Q ss_pred CCCCC--HHHHHHHHHHHHhcCCCcchhHHHHHHhhh
Q 041882 421 KMRFD--LKAWEGLVTDACIGDGNAGGLVEIRDMRDY 455 (491)
Q Consensus 421 ~~~~~--~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~ 455 (491)
+..+ ...|..+|..=..-|+...+..+-++|...
T Consensus 496 -~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 496 -LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred -HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 3334 568888888666677766665555555543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.1 Score=41.31 Aligned_cols=169 Identities=15% Similarity=0.095 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCC---CCCCHHhHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCChhh
Q 041882 145 TLQSFNSLLDILVDNDRVDDAKRMFDDADKMG---FRPNLISFNVMIKGRLK---KGEWEEASRVFDEMLEREVPPTVVT 218 (491)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~ 218 (491)
+..+...++-.|-...+++..+++++.+.... +.-....-....-++.+ .|+.++|++++..+......+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34444566667888889999999999887652 11122222234445556 7899999999988666666778888
Q ss_pred HHHHHHHHHh---------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-H---hHHHHHH----HHHHHcC
Q 041882 219 YNSLIGFLCR---------TGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGE-Y---NEAKKMM----FDMAYRG 281 (491)
Q Consensus 219 ~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~---~~a~~~~----~~~~~~~ 281 (491)
|..+.+.|-+ ....++|+..|.+.-+.. ||...=-.++..+...|. . .+..++- ..+.+.|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 8888877643 224678888888776542 443322222222222332 1 1222222 1122233
Q ss_pred C---CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 041882 282 C---KPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKR 315 (491)
Q Consensus 282 ~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 315 (491)
. ..+-..+..++.++.-.|+.++|.+..+.|.+.
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2 234445567888888899999999999998876
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.02 Score=39.54 Aligned_cols=63 Identities=24% Similarity=0.281 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 322 VTYNILINYLCKEDRAAEAYKVLTEMQIG----GC-KPN-AATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 322 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
.+|+.+...|...|++++|+..|++..+. |- .|. ..++..+..++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35666667777777777777777666532 10 111 34556666677777777777777776654
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.12 E-value=1.2 Score=41.43 Aligned_cols=139 Identities=12% Similarity=0.168 Sum_probs=88.7
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHH--H
Q 041882 85 KLARARDFDAVETVLGYIQDFNIRCKE------TLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDI--L 156 (491)
Q Consensus 85 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~ 156 (491)
.+-+++++.++.++|.++.+.. ..++ ...+.++++|.. ++.+.....+....+.. | ...|-.+..+ +
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHH
Confidence 3557899999999999887653 2222 233466666654 45555555555554432 2 2234444333 4
Q ss_pred HhCCChhhHHHHHHHHHHC--CCCC------------CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCChhh
Q 041882 157 VDNDRVDDAKRMFDDADKM--GFRP------------NLISFNVMIKGRLKKGEWEEASRVFDEMLERE----VPPTVVT 218 (491)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~--~~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~ 218 (491)
.+.+.+++|++.+....+. +..| |...=+..+.++...|++.++..+++++...= ..-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 5678899999888776554 2222 11222566778889999999999998887643 3368888
Q ss_pred HHHHHHHHHh
Q 041882 219 YNSLIGFLCR 228 (491)
Q Consensus 219 ~~~ll~~~~~ 228 (491)
|+.++-.+.+
T Consensus 170 yd~~vlmlsr 179 (549)
T PF07079_consen 170 YDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHhH
Confidence 8886655544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.14 Score=47.63 Aligned_cols=64 Identities=17% Similarity=0.044 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 320 DVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA----ATYRMMVDGFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 320 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 385 (491)
+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5778899999999999999999999998875 5664 35888999999999999999999999885
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.56 Score=36.77 Aligned_cols=125 Identities=16% Similarity=0.179 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLR 368 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 368 (491)
...++..+...+.......+++.+...+. .+....+.++..|++.+ ..+..+.++. ..+......++..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 34556666666667777777777766653 46667777777776543 3344444432 1222233446666777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcC-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041882 369 VEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKG-GKVDDACFVLEEMEKRKMRFDLKAWEGLVTDA 436 (491)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 436 (491)
.+.++++..++.++.. +...+..+... ++++.|.+++.+-. ++..|..++..+
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~~------~~~lw~~~~~~~ 135 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQN------NPELWAEVLKAL 135 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhCC------CHHHHHHHHHHH
Confidence 7777777777665522 12223333333 67777777666421 556777776643
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.91 Score=38.86 Aligned_cols=58 Identities=21% Similarity=0.190 Sum_probs=31.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 041882 222 LIGFLCRTGEMGKAKGLFEDMIKKGTYPN---AVTYALLMEGLCFKGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 222 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (491)
+.+.|.+.|.+..|..-++.|++. .+-+ ...+-.+..+|...|-.++|.+.-.-+..+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 345566666666666666666654 2111 223444555666666666666554444433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.84 Score=44.14 Aligned_cols=176 Identities=16% Similarity=0.173 Sum_probs=106.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChh------cHHHHHHHHH----hcCChHHH
Q 041882 236 KGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLV------NFGVLMSDLG----KRGKIEEA 305 (491)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~ll~~~~----~~~~~~~a 305 (491)
.-+|+-+... ++| .+..+++...=.||-+.+++.+....+.+---.+. .|..++..+. ...+.+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 4445554443 222 24456666667788888888777765533111111 1222222222 24567888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041882 306 KSLLSEMKKRQYKPDVVTYNIL-INYLCKEDRAAEAYKVLTEMQIGGC---KPNAATYRMMVDGFLRVEDFEGSLKVLNA 381 (491)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 381 (491)
.++++.+.+. .|+...|... .+.+...|+.++|++.|++...... ......+--+..++....+|++|.+.|..
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 8999988876 3555555433 4455678999999999987654211 12233455566777888999999999999
Q ss_pred HHhCCCCCCHHhHHHHHH-HHHcCCCH-------HHHHHHHHHHH
Q 041882 382 MLTSRHCPRLETFSCLLV-GLLKGGKV-------DDACFVLEEME 418 (491)
Q Consensus 382 ~~~~~~~~~~~~~~~l~~-~~~~~g~~-------~~a~~~~~~~~ 418 (491)
+.+.. ..+..+|..+.- ++...|+. ++|.++|.++.
T Consensus 331 L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 331 LLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 98863 234445544443 34457777 78888888765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.36 Score=45.03 Aligned_cols=67 Identities=7% Similarity=-0.051 Sum_probs=49.5
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 041882 73 KHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKE---TLFISLIQHYGKAHLVDKAIEVFNRMTSF 140 (491)
Q Consensus 73 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 140 (491)
+.+...+..+..+|...|++++|...|+...+.+ +.+. .+|..+..+|...|++++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556677777788888888888888888877765 3333 34777888888888888888888887764
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.34 Score=41.72 Aligned_cols=97 Identities=21% Similarity=0.298 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC-CHHhHHHHH
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIGG--CKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSR-HCP-RLETFSCLL 398 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~ 398 (491)
.|+.-+..| +.|++..|...|....+.. -.-....+-.|.+++...|+++.|..+|..+.+.- -.| -+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 577766654 4577889998888888752 11223455667888888999999999998888762 112 346777788
Q ss_pred HHHHcCCCHHHHHHHHHHHHHC
Q 041882 399 VGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 399 ~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
....+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8888899999999999988875
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.39 Score=42.46 Aligned_cols=153 Identities=11% Similarity=-0.062 Sum_probs=79.8
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHH----HHHHHHHHHHhCCC
Q 041882 86 LARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQ----SFNSLLDILVDNDR 161 (491)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~ 161 (491)
+.-.|+..+|-..++++.+.- |-|.-.+..-=.+|...|+...-...++++...- .++.. ....+.-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhcc
Confidence 345566666666666666543 4455555555556666666666666666665430 12222 22233344455666
Q ss_pred hhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHhcCChhHHHHH
Q 041882 162 VDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLER---EVPPTVVTYNSLIGFLCRTGEMGKAKGL 238 (491)
Q Consensus 162 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 238 (491)
+++|++.-++..+.+ +-|......+...+--.+++.++.+...+-... +--.-..-|=...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 777777666666554 234555555556666666666666655443221 1000111122222334445667777777
Q ss_pred HHH
Q 041882 239 FED 241 (491)
Q Consensus 239 ~~~ 241 (491)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 764
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.59 Score=44.54 Aligned_cols=155 Identities=14% Similarity=0.089 Sum_probs=79.5
Q ss_pred hhhcCChHHHHHHHH--HhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 041882 51 LKEIRDPDEALSLFH--RHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVD 128 (491)
Q Consensus 51 l~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 128 (491)
..-.++++.+.+..+ .+.. .+ +....+.++..+.+.|-.+.|+++-.. +. .-.....+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHH
Confidence 344566666666554 1111 11 134466666666677777766665422 11 1223445667777
Q ss_pred HHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 041882 129 KAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEML 208 (491)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 208 (491)
.|.++.++. .+...|..|.......|+++-|.+.|.+.. -|..|+-.|.-.|+.+...++.+...
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHH
Confidence 766654332 255577777777777777777777776533 24455556666677666666666655
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 041882 209 EREVPPTVVTYNSLIGFLCRTGEMGKAKGLFED 241 (491)
Q Consensus 209 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 241 (491)
..| -++....++.-.|+.++..+++.+
T Consensus 401 ~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred Hcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 543 144444455555666666655544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.41 E-value=1.5 Score=37.58 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=32.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 363 VDGFLRVEDFEGSLKVLNAMLTSRHCP---RLETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 363 i~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
.+-|.+.|.+..|..-++.|++. .+- ....+-.+..+|...|-.++|...-+-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 44566667777777777777665 221 223344455666666766666665554443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.39 E-value=1.7 Score=38.05 Aligned_cols=140 Identities=13% Similarity=0.050 Sum_probs=57.7
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 041882 122 GKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEAS 201 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 201 (491)
...|++.+|...|+........ +...--.+..+|...|+.+.|..++..+...--.........-+..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 3445555555555554443322 333444455555555555555555554433211111111112223333333333333
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcC
Q 041882 202 RVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK--GTYPNAVTYALLMEGLCFKG 265 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~ 265 (491)
.+-...-.. +-|...-..+...+...|+.++|.+.+-.+... |.. |...-..++..+.-.|
T Consensus 224 ~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 224 DLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 333332221 114444444555555555555555544444432 222 3334444444444444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.38 E-value=1.9 Score=38.50 Aligned_cols=164 Identities=15% Similarity=0.052 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhcCCHh---HHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041882 252 VTYALLMEGLCFKGEYN---EAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILI 328 (491)
Q Consensus 252 ~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 328 (491)
.++..++.+|...+..+ +|.++++.+.... +.....+..-++++.+.++.+.+.+++.+|...-.. ....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHH
Confidence 44566677777766554 3445555554332 223444555566666677888888888888775221 233444444
Q ss_pred HHH---HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHH-HHH---HHHhcCC------HHHHHHHHHHHHhC-CCCCCHHh
Q 041882 329 NYL---CKEDRAAEAYKVLTEMQIGGCKPNAA-TYRM-MVD---GFLRVED------FEGSLKVLNAMLTS-RHCPRLET 393 (491)
Q Consensus 329 ~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~-li~---~~~~~~~------~~~a~~~~~~~~~~-~~~~~~~~ 393 (491)
..+ .. .....+...+..+....+.|... .... ++. .....++ .+....+++...+. +.+.+..+
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 444 33 23345556665555444444443 1111 111 1112111 34444445533332 22223332
Q ss_pred H---HHHH----HHHHcCCCHHHHHHHHHHHH
Q 041882 394 F---SCLL----VGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 394 ~---~~l~----~~~~~~g~~~~a~~~~~~~~ 418 (491)
- .+++ ..+.+.+++++|.++|+-..
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2 2222 34567889999999888544
|
It is also involved in sporulation []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.37 E-value=1 Score=35.29 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=20.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 041882 221 SLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFK 264 (491)
Q Consensus 221 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 264 (491)
.++..+...+.+.....+++.+...+. .+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 344444444455555555555544432 3444455555555443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.34 E-value=2.9 Score=40.39 Aligned_cols=383 Identities=11% Similarity=0.061 Sum_probs=219.6
Q ss_pred CCCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 041882 42 KEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYP-SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQH 120 (491)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (491)
..|+.++...-...+.+.+..++..++.. .|-.. -|......=.+.|..+.+.++|++.... ++.+...|......
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAF 122 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 45666777776667777777778877753 45444 3455555566788999999999988763 56777777776665
Q ss_pred HH-hcCCHHHHHHHHHHhhhC-CC-CcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----
Q 041882 121 YG-KAHLVDKAIEVFNRMTSF-DC-VRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLK---- 193 (491)
Q Consensus 121 ~~-~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~---- 193 (491)
+. ..|+.+...+.|+..... |. -.+...|...|..-..++++.....+++..++. | ...|+....-|.+
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHHhc
Confidence 54 457788888888887653 21 125568888888888889999999999998874 2 2223222222211
Q ss_pred -----cCChHHHHHHHHHHHh--------------------CCCCCCh--hhHHHHHH-------HHHhcCChhHHHHHH
Q 041882 194 -----KGEWEEASRVFDEMLE--------------------REVPPTV--VTYNSLIG-------FLCRTGEMGKAKGLF 239 (491)
Q Consensus 194 -----~~~~~~a~~~~~~~~~--------------------~~~~~~~--~~~~~ll~-------~~~~~~~~~~a~~~~ 239 (491)
....+++.++-..... .+.+.+. ...+.+-. ++.......+....+
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~f 278 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGF 278 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhh
Confidence 1123333332222221 0000000 01111111 111222222333333
Q ss_pred HHHHHc---CC----CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 240 EDMIKK---GT----YPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEM 312 (491)
Q Consensus 240 ~~~~~~---~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 312 (491)
+.-+.. .+ .++..+|...+.--...|+.+.+.-.++...-. +..=...|--.+.-....|+.+-|..++...
T Consensus 279 E~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~ 357 (577)
T KOG1258|consen 279 EEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARA 357 (577)
T ss_pred hhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhh
Confidence 333322 11 124567777777778899999998888877632 0111222333344444558888888887776
Q ss_pred HHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHhCC
Q 041882 313 KKRQYKPD--VVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAA-TYRMMVDGFLRVEDFEGSL---KVLNAMLTSR 386 (491)
Q Consensus 313 ~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~---~~~~~~~~~~ 386 (491)
.+-..+-. ...+.+.+ .-..|+++.|..+++.+.+.- |+.. .-..-+....+.|+.+.+. .++....+..
T Consensus 358 ~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~ 433 (577)
T KOG1258|consen 358 CKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK 433 (577)
T ss_pred hhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc
Confidence 65533322 22233222 234689999999999988752 5443 2222344555678877777 3333333321
Q ss_pred CCCCHHhHHHH----HH-HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 041882 387 HCPRLETFSCL----LV-GLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIG 439 (491)
Q Consensus 387 ~~~~~~~~~~l----~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 439 (491)
.+..+...+ .+ .+.-.++.+.|..++.++.+. +.++...|..++.-....
T Consensus 434 --~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 434 --ENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQ 488 (577)
T ss_pred --cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhC
Confidence 222222222 22 233468899999999999986 566777888888743333
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.32 E-value=1.8 Score=37.90 Aligned_cols=148 Identities=12% Similarity=0.106 Sum_probs=88.6
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 041882 154 DILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMG 233 (491)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 233 (491)
......|++.+|..+|......... +...-..+..+|...|+.+.|..++..+....-.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3445667788888888777665322 344555677788888888888888877765432222222233455555666665
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCCChhcHHHHHHHHHhcCChHH
Q 041882 234 KAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRG-CKPQLVNFGVLMSDLGKRGKIEE 304 (491)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~ 304 (491)
+...+-.++-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+ -.-|...-..++..+.-.|.-+.
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 555555555443 1155555566777777888888777766665542 13344555666666666664333
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.77 Score=43.77 Aligned_cols=158 Identities=13% Similarity=0.189 Sum_probs=79.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChh
Q 041882 84 YKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVD 163 (491)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 163 (491)
+...-.++++.+.++.+.-.-.. ..+....+.++..+-+.|..+.|+++-++ . ..-.....+.|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHH
Confidence 33445566666655554111110 11244566666666677777777665322 1 12334445567766
Q ss_pred hHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041882 164 DAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMI 243 (491)
Q Consensus 164 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 243 (491)
.|.++.++. .+...|..|.....+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+...
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 666655432 2556677777777777777777777665432 4555566666676666666666555
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 041882 244 KKGTYPNAVTYALLMEGLCFKGEYNEAKKMMF 275 (491)
Q Consensus 244 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (491)
..|- ++....++.-.|+.++..+++.
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 5432 3333444445556555555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.17 Score=43.45 Aligned_cols=34 Identities=21% Similarity=0.130 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 041882 198 EEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGE 231 (491)
Q Consensus 198 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 231 (491)
+-+++++++|...|+.||..+-..++.++.+.+.
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 3456677777777777777777777777766554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.04 E-value=1.1 Score=33.90 Aligned_cols=62 Identities=10% Similarity=0.213 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041882 324 YNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSR 386 (491)
Q Consensus 324 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 386 (491)
....+..+...|+-++-.+++.++...+ .+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3444444445555555555555444321 4444444444455555555555555555554444
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.55 Score=42.83 Aligned_cols=60 Identities=12% Similarity=-0.134 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQI 349 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 349 (491)
+..+..++.+.+++..|+..-+...+.+.. |....-.-..++...|+++.|+..|+++.+
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 334444455555555555555555544333 444333444555555555555555555554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.02 E-value=2.1 Score=41.49 Aligned_cols=180 Identities=15% Similarity=0.183 Sum_probs=116.5
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCH------HHHHHHHHHHHh----CCChh
Q 041882 94 AVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTL------QSFNSLLDILVD----NDRVD 163 (491)
Q Consensus 94 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~----~~~~~ 163 (491)
-..-+|..+.+.= || .+..++...+-.|+-+.+++.+.+..+.+--..+ -.|+..+..++. ....+
T Consensus 175 ~G~G~f~L~lSlL-Pp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 175 FGFGLFNLVLSLL-PP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHHhC-CH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 3445556665542 33 3556777777788999998888876553211122 234555544444 35678
Q ss_pred hHHHHHHHHHHCCCCCCHHhHHHH-HHHHHhcCChHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCChhHHHHHH
Q 041882 164 DAKRMFDDADKMGFRPNLISFNVM-IKGRLKKGEWEEASRVFDEMLERE---VPPTVVTYNSLIGFLCRTGEMGKAKGLF 239 (491)
Q Consensus 164 ~a~~~~~~~~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 239 (491)
.|.+++..+.+. -|+...|... .+.+...|++++|.+.|+...... .......+--+.-.+.-..+|++|.+.|
T Consensus 251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 899999999876 4676666433 345677899999999999765421 1123344555677788889999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHH-HHHhcCCH-------hHHHHHHHHHHHc
Q 041882 240 EDMIKKGTYPNAVTYALLME-GLCFKGEY-------NEAKKMMFDMAYR 280 (491)
Q Consensus 240 ~~~~~~~~~~~~~~~~~ll~-~~~~~~~~-------~~a~~~~~~~~~~ 280 (491)
..+.+..-- +..+|.-+.. ++...++. ++|..+|.+....
T Consensus 329 ~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 329 LRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 999886322 3444444333 34456766 8888888877543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.89 E-value=2.7 Score=37.56 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041882 218 TYNSLIGFLCRTGEMGKAKGLFEDMIKK 245 (491)
Q Consensus 218 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 245 (491)
++..-+..+.+.++.+++.+.+.+|+..
T Consensus 123 ~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 123 VFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3334444444455555555555555544
|
It is also involved in sporulation []. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.27 Score=42.28 Aligned_cols=115 Identities=15% Similarity=0.152 Sum_probs=62.6
Q ss_pred cCHHHHHHHHHHHHhC-----CChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh
Q 041882 144 RTLQSFNSLLDILVDN-----DRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVT 218 (491)
Q Consensus 144 ~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 218 (491)
.|-.+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|+..+-+..- .|.. .
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n-v 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN-V 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-H
Confidence 3555555555555432 3344444455555556666666666655554433211 1110 1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHHH
Q 041882 219 YNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEY-NEAKKMMFDM 277 (491)
Q Consensus 219 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~ 277 (491)
+....-.|- .+-+-++.++++|...|+.||..+-..++.++.+.+-. .+..+++--|
T Consensus 128 fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 128 FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 111111111 23345788999999999999999999999998877643 3334443333
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.75 Score=41.96 Aligned_cols=96 Identities=11% Similarity=-0.021 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHh-HHHHHHH
Q 041882 322 VTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLET-FSCLLVG 400 (491)
Q Consensus 322 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~ 400 (491)
.+++.+..+|.+.+++..|++.-...++.+ ++|....-.=.++|...|+++.|+..|+++++. .|+... -+.++..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 355667778888888888888888888765 667777666778888888888888888888884 454443 3344444
Q ss_pred HHcCCCH-HHHHHHHHHHHHC
Q 041882 401 LLKGGKV-DDACFVLEEMEKR 420 (491)
Q Consensus 401 ~~~~g~~-~~a~~~~~~~~~~ 420 (491)
--+.... +...++|..|...
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 3343333 3446777777643
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=2.4 Score=39.81 Aligned_cols=148 Identities=9% Similarity=0.121 Sum_probs=90.8
Q ss_pred ChHHHHHHHHHhhhC-CCCCC-HHhHHHHHHHHHh---------cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 041882 56 DPDEALSLFHRHHQM-GSKHS-YPSYASLIYKLAR---------ARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA 124 (491)
Q Consensus 56 ~~~~A~~~~~~~~~~-~~~~~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (491)
+.+.|+.+|.+.... ...|+ ...|..+...+.. ..+..+|.+.-+...+.+ +.|+.....+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 446888899988821 12333 4445444433222 234456677777777777 66778777777777777
Q ss_pred CCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCChHHHHHH
Q 041882 125 HLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMG-FRPNLISFNVMIKGRLKKGEWEEASRV 203 (491)
Q Consensus 125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~ 203 (491)
++++.|...|++....++. ...+|......+.-.|+.++|.+.+++..+.. .+.........+..|+.. ..++|.++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 8888888888888776522 45566666666667788888888888866542 111222333344455544 35666666
Q ss_pred HHH
Q 041882 204 FDE 206 (491)
Q Consensus 204 ~~~ 206 (491)
|-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.11 Score=31.05 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 041882 114 FISLIQHYGKAHLVDKAIEVFNRMTSF 140 (491)
Q Consensus 114 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 140 (491)
+..+...|.+.|++++|+++|+++.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.56 Score=41.11 Aligned_cols=78 Identities=8% Similarity=0.058 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 041882 357 ATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEK-----RKMRFDLKAWEG 431 (491)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 431 (491)
.++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...++..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 356677888888899999999999998864 34788899999999999999999999888764 688998888888
Q ss_pred HHHH
Q 041882 432 LVTD 435 (491)
Q Consensus 432 ll~~ 435 (491)
+...
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 8776
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.56 E-value=1.1 Score=33.74 Aligned_cols=51 Identities=18% Similarity=0.133 Sum_probs=21.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 333 KEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 333 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
..|+.+.|++.|.+.... .+-+...|+.-.+++.-.|+.++|.+-+++.++
T Consensus 55 E~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred hccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 344444444444444332 122333444444444444444444444444444
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=4.3 Score=38.27 Aligned_cols=146 Identities=10% Similarity=0.004 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 041882 302 IEEAKSLLSEMKKR-QYKPD-VVTYNILINYLCK---------EDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVE 370 (491)
Q Consensus 302 ~~~a~~~~~~~~~~-~~~~~-~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 370 (491)
.+.|..+|.+.... ...|+ ...|..+..++.. .....+|.++.++..+.+ +-|......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 56777778877722 22333 3344444333321 234556777777777765 667777777777777778
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCCcchhHH
Q 041882 371 DFEGSLKVLNAMLTSRHCPR-LETFSCLLVGLLKGGKVDDACFVLEEMEKRK-MRFDLKAWEGLVTDACIGDGNAGGLVE 448 (491)
Q Consensus 371 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~~~~ 448 (491)
+++.|...|++....+ || ..+|......+.-.|+.++|.+.+++..+.. .+.-.......+..|| ....++++..
T Consensus 353 ~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-CCchhhhHHH
Confidence 8999999999888854 54 4566666667777899999999888866531 1112333444444444 3445566666
Q ss_pred HHH
Q 041882 449 IRD 451 (491)
Q Consensus 449 ~~~ 451 (491)
+.+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.71 Score=34.78 Aligned_cols=92 Identities=12% Similarity=0.026 Sum_probs=66.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcC
Q 041882 294 SDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMM---VDGFLRVE 370 (491)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~~ 370 (491)
-+.+..|+.+.|++.|.+....-++ ....||.-.+++.-.|+.++|++=+.+..+..-..+....... ...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3567789999999999998886444 7888999999999999999999988888775322233222222 22455667
Q ss_pred CHHHHHHHHHHHHhCC
Q 041882 371 DFEGSLKVLNAMLTSR 386 (491)
Q Consensus 371 ~~~~a~~~~~~~~~~~ 386 (491)
+-+.|..-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777777777765
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.53 Score=41.26 Aligned_cols=78 Identities=12% Similarity=0.178 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCChhhHHH
Q 041882 147 QSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLE-----REVPPTVVTYNS 221 (491)
Q Consensus 147 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 221 (491)
.++..++..+...|+++.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345555555555555566665555555543 22455555566666666665555555555433 355555555554
Q ss_pred HHHH
Q 041882 222 LIGF 225 (491)
Q Consensus 222 ll~~ 225 (491)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.28 E-value=1.3 Score=38.24 Aligned_cols=98 Identities=17% Similarity=0.137 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--cCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCC-CC-CHHhHHHH
Q 041882 112 TLFISLIQHYGKAHLVDKAIEVFNRMTSFDCV--RTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGF-RP-NLISFNVM 187 (491)
Q Consensus 112 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p-~~~~~~~l 187 (491)
..|+.-+..+ +.|++..|...|.......+. -...++--|..++...|++++|..+|..+.+.-. .| -+..+-.|
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3555555443 456677777777766554311 1223444467777777777777777777665411 11 12455556
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q 041882 188 IKGRLKKGEWEEASRVFDEMLER 210 (491)
Q Consensus 188 l~~~~~~~~~~~a~~~~~~~~~~ 210 (491)
..+..+.|+.++|..+|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 66667777777777777777665
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.23 E-value=1.8 Score=32.79 Aligned_cols=67 Identities=13% Similarity=0.109 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041882 356 AATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMR 423 (491)
Q Consensus 356 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 423 (491)
...+...+......|.-++-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.++-++|++
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 344556677788889999999999988764 3578888888999999999999999999999998864
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.23 E-value=2.4 Score=37.79 Aligned_cols=154 Identities=8% Similarity=-0.020 Sum_probs=98.2
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HH--HHHHHHHHhcCCH
Q 041882 262 CFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVV--TY--NILINYLCKEDRA 337 (491)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~--~~li~~~~~~~~~ 337 (491)
-..|+..+|...++++.+. .+.|...+...=.+|.-.|+.+.-...++++... -.+|.. +| ..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3466677777777777765 3667777777777888888888888888777654 122322 22 3334445578888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHhHHHHHHHHHcCCCHHHHHHHH
Q 041882 338 AEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS---RHCPRLETFSCLLVGLLKGGKVDDACFVL 414 (491)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 414 (491)
++|++.-++..+.+ +.|......+...+...|++.++.++..+-... +...-...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 88888888877654 455556666667777788888888775544332 10011223334444566678888888888
Q ss_pred HHHH
Q 041882 415 EEME 418 (491)
Q Consensus 415 ~~~~ 418 (491)
+.-.
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.21 E-value=3.1 Score=35.37 Aligned_cols=23 Identities=13% Similarity=-0.016 Sum_probs=11.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 041882 221 SLIGFLCRTGEMGKAKGLFEDMI 243 (491)
Q Consensus 221 ~ll~~~~~~~~~~~a~~~~~~~~ 243 (491)
--..+|....++++|...+.+..
T Consensus 36 kAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 36 KAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHhhccHHHHHHHHHHHH
Confidence 33344555555555555444443
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=94.17 E-value=3.5 Score=35.86 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=68.4
Q ss_pred hhcCChHHHHHHHHHhhhCC-----CCCCHH--------hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 041882 52 KEIRDPDEALSLFHRHHQMG-----SKHSYP--------SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLI 118 (491)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~-----~~~~~~--------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 118 (491)
.-..|+..|++..++-.+.= ...+.. ....-|++++..++|.++....-+.-+..-+..+.+...-|
T Consensus 46 vV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCI 125 (309)
T PF07163_consen 46 VVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCI 125 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHH
Confidence 33578888888877754321 111111 11223677777777777766655444433344556666677
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHH-----hCCChhhHHHHH
Q 041882 119 QHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILV-----DNDRVDDAKRMF 169 (491)
Q Consensus 119 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-----~~~~~~~a~~~~ 169 (491)
-.|.+.+.+..+.++-......--..+...|..++..|. -.|.+++|+++.
T Consensus 126 LLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 126 LLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 777788888777777666655322233444655554444 357777777766
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.22 Score=29.68 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=29.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 041882 77 PSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLI 118 (491)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 118 (491)
.++..+...+.+.|++++|.++++.+.+.. |.+...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHhh
Confidence 356677778888888888888888888775 55666555443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.05 E-value=1.6 Score=43.68 Aligned_cols=179 Identities=11% Similarity=0.121 Sum_probs=103.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCK--ETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDI 155 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 155 (491)
....-+..+.+..-++.|..+-+. .+.+++ ..........+.+.|++++|...|-+.... +.|+ .+|.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 345556677777777777665433 222222 133334444556788999988877665442 1222 25556
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHH
Q 041882 156 LVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKA 235 (491)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 235 (491)
|....+..+...+++.+.+.|+. +...-..|+.+|.+.++.+...+..+... .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 66667777778888888888865 55566778889998888877766665544 2211 01133455555555656666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 041882 236 KGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDM 277 (491)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 277 (491)
..+-..... +......++ ...+++++|.+++..+
T Consensus 483 ~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 555444322 222333332 3455666666665543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.03 E-value=7.7 Score=39.25 Aligned_cols=175 Identities=12% Similarity=0.070 Sum_probs=112.2
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHH----HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLI----YKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQH 120 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (491)
-.-+.-+.+..-++.|+.+-.. . ..+......++ ..+.+.|++++|...|-+....- .|+ .++.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~--~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---Q--HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---c--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HHHHH
Confidence 4567778888999999988763 2 23334444444 44557899999998886655432 221 24555
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHH
Q 041882 121 YGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEA 200 (491)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 200 (491)
|....++..-..+++.+.+.|.. +..--..|+.+|.+.++.++..++.+... .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 66667777888889999888866 77777889999999999888777766544 2211 11234556666666666666
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 041882 201 SRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDM 242 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 242 (491)
..+-..... +......++ -..+++++|++++..+
T Consensus 483 ~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 655544322 233333333 3456777777776655
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.97 E-value=2.5 Score=33.48 Aligned_cols=51 Identities=14% Similarity=0.060 Sum_probs=21.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 298 KRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQI 349 (491)
Q Consensus 298 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 349 (491)
+.++.+++..++..+.-..+. ....-..-...+...|++.+|+.+|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555555443222 111111112223445555555555555443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.83 E-value=2.9 Score=33.63 Aligned_cols=135 Identities=16% Similarity=0.150 Sum_probs=61.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 041882 236 KGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKR 315 (491)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 315 (491)
.++++.+.+.+++|+...+..++..+.+.|++... ..++..++-+|.......+-.+.. ....+.++--+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 34445555566666666666666666666665443 333344445554444333322221 122222222223221
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 316 QYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 316 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
=...+..++..+...|++-+|+++.+...... .++ ...++++-.+.+|...-..+++-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~---~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVP---ARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCC---HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 01124455556666666666666665542211 111 12344444455554444444444433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.83 E-value=2.5 Score=38.13 Aligned_cols=165 Identities=13% Similarity=0.043 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHC-CCCCC---HHhHHHHHHHHHhcCChHHHHHHHHHHHhCC-----CCCChhh
Q 041882 148 SFNSLLDILVDNDRVDDAKRMFDDADKM-GFRPN---LISFNVMIKGRLKKGEWEEASRVFDEMLERE-----VPPTVVT 218 (491)
Q Consensus 148 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~ 218 (491)
+|..+.+++-+.-++.+++.+-+.-... |..|. -....++..++...+.++.+++.|+...... ......+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4444455555545555555554443332 22221 1222335556666677777777777665421 1123456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCHH------HHHHHHHHHHhcCCHhHHHHHHHHHHH----cCCCC
Q 041882 219 YNSLIGFLCRTGEMGKAKGLFEDMIKK----GTYPNAV------TYALLMEGLCFKGEYNEAKKMMFDMAY----RGCKP 284 (491)
Q Consensus 219 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~ 284 (491)
+..|...|.+..|+++|.-+..+..+. ++. |.. ....+.-++-..|....|.+.-++..+ .|-.+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 777788888888888777666554432 221 211 112233445556666666666555443 23221
Q ss_pred -ChhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 041882 285 -QLVNFGVLMSDLGKRGKIEEAKSLLSEMK 313 (491)
Q Consensus 285 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 313 (491)
.......+.+.|...|+.+.|+.-|+...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 12334566677777888888777776554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.58 E-value=2.7 Score=32.58 Aligned_cols=72 Identities=10% Similarity=0.025 Sum_probs=38.0
Q ss_pred HHhcCCHHHHHHHHHHhhhCCC--CcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 041882 121 YGKAHLVDKAIEVFNRMTSFDC--VRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRL 192 (491)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 192 (491)
..+.|++++|.+.|+.+..+-. +-...+--.++.+|.+.+++++|...+++.++.........|...+.+++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3455666666666666655421 11334455566666666666666666666665533222234444444444
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.26 E-value=6 Score=35.56 Aligned_cols=48 Identities=13% Similarity=0.261 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh--cC----ChHHHHHHHHHHHhC
Q 041882 163 DDAKRMFDDADKMGFRPNLISFNVMIKGRLK--KG----EWEEASRVFDEMLER 210 (491)
Q Consensus 163 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~ 210 (491)
++.+.+++.|.+.|+.-+..+|-+....... .. ....|..+|+.|.+.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 3444555566666665555444432222221 11 234455566666554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.02 E-value=8.5 Score=36.62 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=30.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041882 187 MIKGRLKKGEWEEASRVFDEMLEREVP-PTVVTYNSLIGFLCRTGEMGKAKGLFEDMI 243 (491)
Q Consensus 187 ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 243 (491)
+..++-+.|+.++|.+.+++|.+.... -+......|+.++...+.+.++..++.+..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 444445556666666666665543211 122344556666666666666666666554
|
The molecular function of this protein is uncertain. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.99 E-value=5.2 Score=34.09 Aligned_cols=206 Identities=17% Similarity=0.217 Sum_probs=106.6
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHH
Q 041882 77 PSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDIL 156 (491)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 156 (491)
..|.....+|....+++.|...+....+-. ..+...|. ....++.|.-+.+++.... --+..|+.....|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslfh-------AAKayEqaamLake~~kls--Evvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHH
Confidence 345556667777788888888776665321 22333222 1234566666666666531 1234566677777
Q ss_pred HhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHh---CC--CCCChhhHHHHHHHHHhcCC
Q 041882 157 VDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLE---RE--VPPTVVTYNSLIGFLCRTGE 231 (491)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~--~~~~~~~~~~ll~~~~~~~~ 231 (491)
..+|.++.|-..+++.-+. .+..++++|+++|++... .+ ...-...+....+.+.+...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 7777777776666654321 122233444444443221 11 01112234445556666667
Q ss_pred hhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHcC---CCCChhcHHHHHHHHHhcCChH
Q 041882 232 MGKAKGLFEDMIKK----GTYPNA-VTYALLMEGLCFKGEYNEAKKMMFDMAYRG---CKPQLVNFGVLMSDLGKRGKIE 303 (491)
Q Consensus 232 ~~~a~~~~~~~~~~----~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~ 303 (491)
+++|-..+.+-... .-.++. ..|...|-.+....++..|...++.--+.+ -+-+..+...|+.+| ..|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence 76665555443211 111121 234445555666677777777777643322 123345555666655 456666
Q ss_pred HHHHHH
Q 041882 304 EAKSLL 309 (491)
Q Consensus 304 ~a~~~~ 309 (491)
++..++
T Consensus 245 ~~~kvl 250 (308)
T KOG1585|consen 245 EIKKVL 250 (308)
T ss_pred HHHHHH
Confidence 655554
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.97 E-value=8.6 Score=36.59 Aligned_cols=167 Identities=13% Similarity=0.201 Sum_probs=111.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHH
Q 041882 108 RCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVM 187 (491)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 187 (491)
+.|.....+++..++...++.-.+.+-.+|...| -+-..|..++.+|..+ ..+.-..+|+++.+..+ |......-
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHH
Confidence 5566777788888888888888888888888766 4677888888888888 55777888888877643 33333333
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCC-----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 041882 188 IKGRLKKGEWEEASRVFDEMLEREVP-----PTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK-GTYPNAVTYALLMEGL 261 (491)
Q Consensus 188 l~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~ 261 (491)
+..+...++-+.+...|..+..+=++ .-...|.-+...- ..+.+....+..++... |...-...+.-+-.-|
T Consensus 138 La~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 138 LADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 33444447777788888777654221 0122455444321 35566677776666543 4444455666666778
Q ss_pred HhcCCHhHHHHHHHHHHHcC
Q 041882 262 CFKGEYNEAKKMMFDMAYRG 281 (491)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~ 281 (491)
....++++|++++..+.+..
T Consensus 216 s~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 216 SENENWTEAIRILKHILEHD 235 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc
Confidence 88888888888888777664
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.94 E-value=5.2 Score=34.00 Aligned_cols=200 Identities=21% Similarity=0.104 Sum_probs=103.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHH-
Q 041882 217 VTYNSLIGFLCRTGEMGKAKGLFEDMIKK-GTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMS- 294 (491)
Q Consensus 217 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~- 294 (491)
..+......+...+.+..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444555555555555555555554431 122233344444444455555555555555555432221 111111122
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 041882 295 DLGKRGKIEEAKSLLSEMKKRQY--KPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKP-NAATYRMMVDGFLRVED 371 (491)
Q Consensus 295 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~ 371 (491)
.+...|+++.+...+........ ......+......+...++.+.+...+....... .. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 45566666666666666644211 1122333333333555667777777777766542 22 34556666666667777
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 372 FEGSLKVLNAMLTSRHCPR-LETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 372 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
++.+...+....... |+ ...+..+...+...|..+++...+++....
T Consensus 218 ~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777776642 32 333444444444566677777777776654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.75 E-value=9.3 Score=36.37 Aligned_cols=144 Identities=16% Similarity=0.116 Sum_probs=87.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC------------------
Q 041882 80 ASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFD------------------ 141 (491)
Q Consensus 80 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------ 141 (491)
..+|....+.++.+.-.+.-.+..+.+ +.-...|..|.. -......+|+++|++..+.+
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~-pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e 248 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEIN-PDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWE 248 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhh-hhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhh
Confidence 455666667777777777766666654 212233332222 12344666666666654321
Q ss_pred ------CCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 041882 142 ------CVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFR-PNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPP 214 (491)
Q Consensus 142 ------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 214 (491)
..+-..+-..+..++-+.|+.++|++.|++|.+.... -.......|+.++...+.+.++..++.+..+...+.
T Consensus 249 ~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk 328 (539)
T PF04184_consen 249 AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPK 328 (539)
T ss_pred hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence 0011222244566677789999999999999865321 133466789999999999999999999976543332
Q ss_pred -ChhhHHHHHHHH
Q 041882 215 -TVVTYNSLIGFL 226 (491)
Q Consensus 215 -~~~~~~~ll~~~ 226 (491)
-...|+..+-.+
T Consensus 329 SAti~YTaALLka 341 (539)
T PF04184_consen 329 SATICYTAALLKA 341 (539)
T ss_pred hHHHHHHHHHHHH
Confidence 244566655433
|
The molecular function of this protein is uncertain. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.62 E-value=12 Score=37.32 Aligned_cols=182 Identities=12% Similarity=0.108 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHhhh-------CCCCcCHHHHHHHHHHHHhCC-
Q 041882 92 FDAVETVLGYIQDFNIRCKETLFISLIQH---YGKAHLVDKAIEVFNRMTS-------FDCVRTLQSFNSLLDILVDND- 160 (491)
Q Consensus 92 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~- 160 (491)
...+.+.++...+.|. ........++.. +....+.+.|+.+|+...+ .+ .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4567777777776662 122222222222 3355678888888877755 33 3335555666666543
Q ss_pred ----ChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH--hcCChh
Q 041882 161 ----RVDDAKRMFDDADKMGFRPNLISFNVMIKGRLK-KGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLC--RTGEMG 233 (491)
Q Consensus 161 ----~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~ 233 (491)
+...|..++.+.-+.| .|+...+-..+..... ..+...|.++|......|.. ....+..++.... ...+..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence 4555777777766665 3344333222222222 23566777777777776643 2222222211111 223566
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 041882 234 KAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRG 281 (491)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 281 (491)
.|..++++..+.|.. ....-...+..+.. +.++.+...+..+.+.|
T Consensus 382 ~A~~~~k~aA~~g~~-~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 382 LAFAYYKKAAEKGNP-SAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHccCh-hhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 777777777776622 22222222233333 56666665555555554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.38 E-value=4.7 Score=32.03 Aligned_cols=50 Identities=14% Similarity=-0.033 Sum_probs=20.0
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 041882 89 ARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTS 139 (491)
Q Consensus 89 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 139 (491)
.++.+++..++.-+.-.. |..+..-..-...+...|++.+|+.+|+++..
T Consensus 23 ~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred cCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344444444444444332 11222222222333444455555555544443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.35 Score=27.27 Aligned_cols=26 Identities=15% Similarity=0.008 Sum_probs=19.4
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 393 TFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
+|..|...|.+.|++++|..++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677888888888888888888754
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.24 E-value=2.7 Score=34.42 Aligned_cols=60 Identities=7% Similarity=0.023 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCK--ETLFISLIQHYGKAHLVDKAIEVFNRM 137 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 137 (491)
.+..+...|.+.|+.+.|.+.|..+......+. ...+-.+|+.....+++..+...+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344555555555555555555555554432221 233445555555555555555554444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.24 E-value=2 Score=37.85 Aligned_cols=50 Identities=24% Similarity=0.434 Sum_probs=29.8
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 041882 231 EMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (491)
++++++.++..=++-|+.||.++++.++..+.+.+++.+|.++...|...
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 45566666655556666666666666666666666666666555555443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.11 E-value=6.7 Score=33.28 Aligned_cols=201 Identities=22% Similarity=0.160 Sum_probs=110.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 041882 182 ISFNVMIKGRLKKGEWEEASRVFDEMLER-EVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLME- 259 (491)
Q Consensus 182 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~- 259 (491)
..+......+...+.+..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444555555555555555555554431 122234444555555555555666666666655543222 111111222
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCC--CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 260 GLCFKGEYNEAKKMMFDMAYRGC--KPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRA 337 (491)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 337 (491)
.+...|+++.+...+........ ......+......+...++.+.+...+..............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 56666667777666666644211 0122223333333556677777777777776653221355666677777777778
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 338 AEAYKVLTEMQIGGCKPN-AATYRMMVDGFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 385 (491)
+.+...+...... .|+ ...+..+...+...+..+.+...+.+....
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888777664 233 334444444444666788888888777775
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.08 E-value=5.4 Score=32.10 Aligned_cols=30 Identities=7% Similarity=0.246 Sum_probs=14.6
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCChH
Q 041882 169 FDDADKMGFRPNLISFNVMIKGRLKKGEWE 198 (491)
Q Consensus 169 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 198 (491)
++.+.+.++.|+...+..+++.+.+.|++.
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 333344445555555555555555555433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.05 E-value=4.7 Score=31.33 Aligned_cols=73 Identities=12% Similarity=0.126 Sum_probs=38.3
Q ss_pred HHHhcCChhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHH
Q 041882 85 KLARARDFDAVETVLGYIQDFN--IRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILV 157 (491)
Q Consensus 85 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 157 (491)
...+.|+++.|.+.|+.+..+- .+-.....-.++.+|.+.+++++|...+++..+..+...-..|...+.+++
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3445666666666666666542 122334455566666666666666666666655543222233444444433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.01 E-value=2.9 Score=34.25 Aligned_cols=97 Identities=11% Similarity=0.016 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHhHHH
Q 041882 322 VTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA--ATYRMMVDGFLRVEDFEGSLKVLNAMLTS---RHCPRLETFSC 396 (491)
Q Consensus 322 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 396 (491)
..+..+...|.+.|+.+.|++.|.++.+....+.. ..+-.+|+.....+++..+...+.++... +-+++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35667777788888888888888887765433333 34556677777778888877777666553 21122111111
Q ss_pred HH--HHHHcCCCHHHHHHHHHHHH
Q 041882 397 LL--VGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 397 l~--~~~~~~g~~~~a~~~~~~~~ 418 (491)
.. -++...|++.+|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 11 22345678888777776654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=91.99 E-value=1.4 Score=31.21 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041882 374 GSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVT 434 (491)
Q Consensus 374 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 434 (491)
++.+-++.+....+.|++.+..+.+++|.+.+++..|.++++-.+.+ ...+...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 44555555555566677777777777777777777777777766633 1113345555554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.96 E-value=9.4 Score=34.64 Aligned_cols=226 Identities=12% Similarity=0.086 Sum_probs=115.8
Q ss_pred HhcCCHHHHHHHHHHhhhC--CCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC--CCCCC---HHhHHHHHHHHHhc
Q 041882 122 GKAHLVDKAIEVFNRMTSF--DCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM--GFRPN---LISFNVMIKGRLKK 194 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p~---~~~~~~ll~~~~~~ 194 (491)
....+.++|+..|.+.... +......++..+..+.++.|.+++++..--.-+.. ...-. -..|..+.+++-+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888877776542 11112345666777777777776665543222111 00111 12333444444444
Q ss_pred CChHHHHHHHHHHHhC-CCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcC
Q 041882 195 GEWEEASRVFDEMLER-EVPP---TVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGT-----YPNAVTYALLMEGLCFKG 265 (491)
Q Consensus 195 ~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~~ 265 (491)
-++.+++.+-..-... |..| .-....++..++.-.+.++++++.|+...+... .....++..+-..|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4555555544443332 2222 112334455666666777778777777664311 112345667777777777
Q ss_pred CHhHHHHHHHHHHH----cCCCCChhcHHH-----HHHHHHhcCChHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHH
Q 041882 266 EYNEAKKMMFDMAY----RGCKPQLVNFGV-----LMSDLGKRGKIEEAKSLLSEMKK----RQYKP-DVVTYNILINYL 331 (491)
Q Consensus 266 ~~~~a~~~~~~~~~----~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~ 331 (491)
|+++|.-+.....+ .++..-...|.. +.-++...|....|.+.-++..+ .|-.+ .......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 77777766554433 222111122222 23344556666666666665543 22111 122344556666
Q ss_pred HhcCCHHHHHHHHHHH
Q 041882 332 CKEDRAAEAYKVLTEM 347 (491)
Q Consensus 332 ~~~~~~~~a~~~~~~~ 347 (491)
...|+.+.|+.-|+..
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 6777777777666654
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=91.89 E-value=8.4 Score=33.92 Aligned_cols=137 Identities=9% Similarity=0.158 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHhhh-CCCCcCHHHHHHHHHHHHhC-C-ChhhHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCChHHH
Q 041882 125 HLVDKAIEVFNRMTS-FDCVRTLQSFNSLLDILVDN-D-RVDDAKRMFDDADKM-GFRPNLISFNVMIKGRLKKGEWEEA 200 (491)
Q Consensus 125 ~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~-~-~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a 200 (491)
..+.+|+.+|+.... ..+-.|..+...+++..... + ....-.++.+-+... +-.++..+...++..+++.+++...
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345566666663322 22344666666666666652 2 222223333333322 3456677777788888888888888
Q ss_pred HHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHH-----HHHcCCCCCHHHHHHHHHHH
Q 041882 201 SRVFDEMLER-EVPPTVVTYNSLIGFLCRTGEMGKAKGLFED-----MIKKGTYPNAVTYALLMEGL 261 (491)
Q Consensus 201 ~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~ll~~~ 261 (491)
.++++..... +...|...|..+|+.-...|+..-...+.++ +...++..+...-..+-..+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 8887776554 4555777888888888888887776666654 23345555555555444443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.44 Score=26.87 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 041882 219 YNSLIGFLCRTGEMGKAKGLFEDM 242 (491)
Q Consensus 219 ~~~ll~~~~~~~~~~~a~~~~~~~ 242 (491)
|..|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666666666666666663
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.63 E-value=21 Score=37.95 Aligned_cols=105 Identities=20% Similarity=0.151 Sum_probs=53.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChh--cHHHHHHHHHh
Q 041882 221 SLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLV--NFGVLMSDLGK 298 (491)
Q Consensus 221 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~ 298 (491)
+....+.....+++|--.|+..-+. .-.+.+|...|+|.+|..+..++... -+.. +-..|+.-+..
T Consensus 944 ~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 944 AYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVE 1011 (1265)
T ss_pred HHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHH
Confidence 3334444556666666666554321 23456667777777777766655421 1111 11345555566
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041882 299 RGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLT 345 (491)
Q Consensus 299 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 345 (491)
.++.-+|-++..+.... ....+..|++...+++|.++..
T Consensus 1012 ~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred cccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHH
Confidence 66666666666555442 1122333444445555555443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.37 E-value=6.5 Score=31.58 Aligned_cols=123 Identities=12% Similarity=-0.033 Sum_probs=50.2
Q ss_pred hhcCChHHHHHHHHHhhhCCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH-HHHH--HHHHHHhcCCH
Q 041882 52 KEIRDPDEALSLFHRHHQMGSKHSYP-SYASLIYKLARARDFDAVETVLGYIQDFNIRCKET-LFIS--LIQHYGKAHLV 127 (491)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~--l~~~~~~~~~~ 127 (491)
.+.+..++|+.-|..+..-|...-+. ..-.......+.|+-..|...|+.+-.....|-.. -... -.-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 44455555555555555444221111 11112223344555555555555554432222111 0000 11122344555
Q ss_pred HHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHH
Q 041882 128 DKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADK 174 (491)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 174 (491)
+....-.+.+...+-+.....-..|.-+..+.|++..|.+.|.++..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55444444443333222233334444444455555555555555443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.19 E-value=3.9 Score=36.17 Aligned_cols=105 Identities=17% Similarity=0.216 Sum_probs=76.9
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCh
Q 041882 210 REVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKG---TYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQL 286 (491)
Q Consensus 210 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 286 (491)
.|.+.+..+...++..-....+++.++..+-++.... ..|+...+ .++.. +..-+..+++.++..-+..|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irl-llky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHH-HHccChHHHHHHHhCcchhccccch
Confidence 3555566677777776667788999998888877541 12222222 22222 3344667999999999999999999
Q ss_pred hcHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 041882 287 VNFGVLMSDLGKRGKIEEAKSLLSEMKKRQ 316 (491)
Q Consensus 287 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 316 (491)
++++.+++.+.+.+++.+|..+.-.|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999888776653
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=91.00 E-value=10 Score=33.35 Aligned_cols=135 Identities=13% Similarity=0.111 Sum_probs=74.7
Q ss_pred hhhHHHHHHHHHH-CCCCCCHHhHHHHHHHHHh-cC-ChHHHHHHHHHHHh-CCCCCChhhHHHHHHHHHhcCChhHHHH
Q 041882 162 VDDAKRMFDDADK-MGFRPNLISFNVMIKGRLK-KG-EWEEASRVFDEMLE-REVPPTVVTYNSLIGFLCRTGEMGKAKG 237 (491)
Q Consensus 162 ~~~a~~~~~~~~~-~~~~p~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 237 (491)
..+|+++|+.... ..+--|......+++.... .+ ....-.++.+.+.. .+-.++..+...++..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4455555552211 1233355555566655554 21 22222333333332 2344566677777777777777777777
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH-----HHHcCCCCChhcHHHHHHHH
Q 041882 238 LFEDMIKK-GTYPNAVTYALLMEGLCFKGEYNEAKKMMFD-----MAYRGCKPQLVNFGVLMSDL 296 (491)
Q Consensus 238 ~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~ll~~~ 296 (491)
+++..... +..-|...|..+|+.....|+..-...+..+ +.+.++..+...-..+-+.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 77776654 4555677777777777777777666655543 23345555554444444433
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.73 E-value=6.7 Score=30.64 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=9.9
Q ss_pred HhCCChhhHHHHHHHHHHC
Q 041882 157 VDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~ 175 (491)
...|+|++|.++|+++.+.
T Consensus 55 i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 55 IARGNYDEAARILRELLSS 73 (153)
T ss_pred HHcCCHHHHHHHHHhhhcc
Confidence 3445555555555555543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=90.68 E-value=4.1 Score=29.29 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041882 374 GSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVT 434 (491)
Q Consensus 374 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 434 (491)
+..+-+..+....+.|++.+..+.+++|.+.+++..|.++++-++.+ ..+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 34455555555666677777777777777777777777777777643 2222225555554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.56 E-value=14 Score=34.17 Aligned_cols=65 Identities=11% Similarity=0.011 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 320 DVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKP---NAATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 320 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
...+|..++..+.+.|+++.|...+..+...+... .+.....-+...-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45577888888888899998888888887643111 333444445666677888888888888877
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.53 E-value=21 Score=36.04 Aligned_cols=76 Identities=12% Similarity=0.066 Sum_probs=38.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCC
Q 041882 83 IYKLARARDFDAVETVLGYIQDFNIR-CKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDR 161 (491)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 161 (491)
+.-+.+.+.+++|+++.+.....-.. .........+..+.-.|++++|-...-.|.. -+...|...+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 33444555566665555444332100 0234455556666666666666666655554 244455555555555444
Q ss_pred h
Q 041882 162 V 162 (491)
Q Consensus 162 ~ 162 (491)
.
T Consensus 439 l 439 (846)
T KOG2066|consen 439 L 439 (846)
T ss_pred c
Confidence 3
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.44 Score=26.48 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=10.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 041882 320 DVVTYNILINYLCKEDRAAEA 340 (491)
Q Consensus 320 ~~~~~~~li~~~~~~~~~~~a 340 (491)
+...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444555555555555555544
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.05 E-value=12 Score=32.45 Aligned_cols=200 Identities=15% Similarity=0.190 Sum_probs=114.7
Q ss_pred CCCcCHHHHHHHHHHH-HhCCChhhHHHHHHHHHHCCCCCCH---HhHHHHHHHHHhcCChHHHHHHHHHHHhC---CC-
Q 041882 141 DCVRTLQSFNSLLDIL-VDNDRVDDAKRMFDDADKMGFRPNL---ISFNVMIKGRLKKGEWEEASRVFDEMLER---EV- 212 (491)
Q Consensus 141 ~~~~~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~- 212 (491)
+..||+..=|..-..- .+..++++|+.-|.+..+....-.. .....++....+.+++++....|.++..- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3456655444332221 1234688888888888765322223 33445677788888888888888877542 11
Q ss_pred -CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHcC----
Q 041882 213 -PPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK--GTYPNA----VTYALLMEGLCFKGEYNEAKKMMFDMAYRG---- 281 (491)
Q Consensus 213 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---- 281 (491)
.-+..+.|+++..-+...+.+.-.++|+.-.+. ... +. .|-.-+...|...+.+....++++++...-
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAK-NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAK-NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhh-cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 124556677777777667766666666654322 001 11 122345566777777888888877776541
Q ss_pred CCCC-------hhcHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH-----HhcCCHHHHHH
Q 041882 282 CKPQ-------LVNFGVLMSDLGKRGKIEEAKSLLSEMKKR-QYKPDVVTYNILINYL-----CKEDRAAEAYK 342 (491)
Q Consensus 282 ~~~~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~-----~~~~~~~~a~~ 342 (491)
...| ...|..-|..|....+-.....+|++.... ..-|.+.... +|+-| .+.|++++|..
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence 1111 234566677777777777777777765432 2334444433 33333 35677777643
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.88 E-value=14 Score=33.16 Aligned_cols=127 Identities=14% Similarity=0.199 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCC----HhHHHHHHHHHHHcCC---CCChhcHHHHHHHHHhcCC---
Q 041882 234 KAKGLFEDMIKKGTYPNAVTYALLMEGLCF--KGE----YNEAKKMMFDMAYRGC---KPQLVNFGVLMSDLGKRGK--- 301 (491)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~----~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~--- 301 (491)
+...+++.|.+.|+.-+..+|-+....... ..+ ...+..+|+.|.+... .++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 445566666666666555555442222221 112 3345566666665431 1223334444322 2222
Q ss_pred -hHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 041882 302 -IEEAKSLLSEMKKRQYKPDV--VTYNILINYLCKEDR--AAEAYKVLTEMQIGGCKPNAATYRMM 362 (491)
Q Consensus 302 -~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 362 (491)
.+.++.+|+.+.+.|...+- .....++...-.... ..++.++++.+.+.|+++....|..+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 23445555555554443321 222222221111111 33555566666666655555544433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.87 E-value=0.48 Score=26.31 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhcCCHHHH
Q 041882 111 ETLFISLIQHYGKAHLVDKA 130 (491)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~~a 130 (491)
...|..+...+...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33333333333333333333
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.78 E-value=8.2 Score=30.18 Aligned_cols=53 Identities=13% Similarity=-0.008 Sum_probs=35.3
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 041882 88 RARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFD 141 (491)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 141 (491)
..++.+++..+++.+.-.. |.....-..-...+...|++.+|+++|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 4677888888888777654 2233333333445577888888888888887754
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.66 E-value=5.8 Score=28.57 Aligned_cols=47 Identities=11% Similarity=0.106 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 041882 269 EAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKR 315 (491)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 315 (491)
+..+-+..+....+.|++....+.+.+|.+.+++..|.++|+.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455555555566666666666666666666666666666666544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.63 E-value=21 Score=34.77 Aligned_cols=339 Identities=13% Similarity=0.101 Sum_probs=202.2
Q ss_pred HHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 041882 60 ALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTS 139 (491)
Q Consensus 60 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 139 (491)
.+..++.... -..+...++.++.---...+.+.+..++..+...- |.--..|......=.+.|..+.+..+|++...
T Consensus 31 ~~~~we~~~~--~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~ 107 (577)
T KOG1258|consen 31 SLDYWEILSN--DSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQ 107 (577)
T ss_pred hhhHhhcccc--chhcccchHHHHhccCchhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444332 23455567777766555566677888888887653 44445567777777889999999999999876
Q ss_pred CCCCcCHHHHHHHHHHHHh-CCChhhHHHHHHHHHHC-CCC-CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 041882 140 FDCVRTLQSFNSLLDILVD-NDRVDDAKRMFDDADKM-GFR-PNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTV 216 (491)
Q Consensus 140 ~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 216 (491)
+++.+...|...+..+.. .|+.+...+.|+..... |.. -+...|...|..-...+++.....+++++.+. ..
T Consensus 108 -aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~ 182 (577)
T KOG1258|consen 108 -AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PL 182 (577)
T ss_pred -hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hh
Confidence 356688888887776655 47788888888888765 321 24567888888888899999999999999885 22
Q ss_pred hhHHHHHHHHHh---------cCChhHHHHHHHHHHHc----CCCCCHHHHHHHHH------------------------
Q 041882 217 VTYNSLIGFLCR---------TGEMGKAKGLFEDMIKK----GTYPNAVTYALLME------------------------ 259 (491)
Q Consensus 217 ~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~------------------------ 259 (491)
..++..-.-|.+ ....+++.++-...... ...........-+.
T Consensus 183 ~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~ 262 (577)
T KOG1258|consen 183 HQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHE 262 (577)
T ss_pred hHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHH
Confidence 233332222221 12233333333222210 00001111111111
Q ss_pred -HHHhcCCHhHHHHHHHHHHHc---CC----CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041882 260 -GLCFKGEYNEAKKMMFDMAYR---GC----KPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYL 331 (491)
Q Consensus 260 -~~~~~~~~~~a~~~~~~~~~~---~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 331 (491)
.+............++.-++. .+ .++..+|..-+..-...|+.+.+.-+|++..-- ...-...|--.+.-.
T Consensus 263 ~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m 341 (577)
T KOG1258|consen 263 KVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWM 341 (577)
T ss_pred HHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHH
Confidence 111122222222223322222 11 223566777788888899999999999887642 111334455555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHcCCCHH
Q 041882 332 CKEDRAAEAYKVLTEMQIGGCKPN--AATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRL-ETFSCLLVGLLKGGKVD 408 (491)
Q Consensus 332 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~ 408 (491)
...|+.+-|..++....+--++-. ...+.+. -+-..|++..|..+++.+.+.- |+. ..-..-+....+.|+.+
T Consensus 342 ~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~--f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~ 417 (577)
T KOG1258|consen 342 ESSGDVSLANNVLARACKIHVKKTPIIHLLEAR--FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLE 417 (577)
T ss_pred HHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH--HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchh
Confidence 566888888888776655433322 2222222 2345689999999999998863 443 23333445566788888
Q ss_pred HHH
Q 041882 409 DAC 411 (491)
Q Consensus 409 ~a~ 411 (491)
.+.
T Consensus 418 ~~~ 420 (577)
T KOG1258|consen 418 DAN 420 (577)
T ss_pred hhh
Confidence 887
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=89.46 E-value=18 Score=34.17 Aligned_cols=128 Identities=11% Similarity=-0.030 Sum_probs=80.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCC
Q 041882 82 LIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDR 161 (491)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 161 (491)
-+......||...|-+-+....+.. +.++.........+...|+++.+...+...... +.....+...+++...+.|+
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 3444556677776654444444332 233333333344456778999888887766443 12345577788888888899
Q ss_pred hhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041882 162 VDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREV 212 (491)
Q Consensus 162 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 212 (491)
+++|..+-.-|....+. +...........-..|-++++...++++...+.
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 99999988888876654 444444444445556778888888888776543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.32 E-value=27 Score=35.42 Aligned_cols=216 Identities=13% Similarity=0.145 Sum_probs=86.2
Q ss_pred chHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCC-------hhHHHHHHHHHHhcCCCCCHH---HHH
Q 041882 46 PFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARD-------FDAVETVLGYIQDFNIRCKET---LFI 115 (491)
Q Consensus 46 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~---~~~ 115 (491)
+++--+.+.|+.++|+++....... .......+...+..+....+ -+....-|+...+.....|+. +|.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~ 194 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYK 194 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Confidence 5777889999999999999555432 34444567777777766432 224444555554443222332 222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHH--HHHHHHHHHHhCCC---------hhhHHHHHHHHHHCCCCCCHHhH
Q 041882 116 SLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQ--SFNSLLDILVDNDR---------VDDAKRMFDDADKMGFRPNLISF 184 (491)
Q Consensus 116 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~p~~~~~ 184 (491)
.+ +++.-...-. . .+..+.+ .|-.|..+-..... .+...+.+.+.-+..+.+ ....
T Consensus 195 il----g~cD~~~~~~------~--~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~-~~~p 261 (613)
T PF04097_consen 195 IL----GRCDLSRRHL------P--EVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA-GSNP 261 (613)
T ss_dssp HH----HT--CCC-S-------T--TC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT-----
T ss_pred HH----hcCCccccch------H--HHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-chhH
Confidence 22 2221100000 0 1111222 22222221111111 112222222222222333 1112
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh
Q 041882 185 NVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKG-TYPNAVTYALLMEGLCF 263 (491)
Q Consensus 185 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~ 263 (491)
-.....+.-.|+++.|.+.+-. ..+...+..++.+.+..|.-.+-.+... ..+.... -.|...-+..+|..|.+
T Consensus 262 ~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~ 336 (613)
T PF04097_consen 262 LLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTR 336 (613)
T ss_dssp --HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHH
Confidence 2344556678899999988876 1223335555555554443222222211 2222211 11112456777777765
Q ss_pred ---cCCHhHHHHHHHHHHHc
Q 041882 264 ---KGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 264 ---~~~~~~a~~~~~~~~~~ 280 (491)
..+...|.+++-.+...
T Consensus 337 ~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 337 SFEITDPREALQYLYLICLF 356 (613)
T ss_dssp TTTTT-HHHHHHHHHGGGGS
T ss_pred HHhccCHHHHHHHHHHHHHc
Confidence 34667777777665544
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.23 E-value=16 Score=32.68 Aligned_cols=135 Identities=16% Similarity=0.016 Sum_probs=68.3
Q ss_pred ChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041882 285 QLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKED-RAAEAYKVLTEMQIGGCKPNAATYRMMV 363 (491)
Q Consensus 285 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li 363 (491)
+..+-...+.++++.++ ..+...+-.+.+. ++..+-...+.++.+.+ ....+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33444455555555555 3344444444432 34444444455555432 13345555555543 45556666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041882 364 DGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTD 435 (491)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 435 (491)
.++.+.++. .+...+-...+.+ + .....+.++...|.. +|...+..+.+. .||...-...+.+
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 666666663 4554444444432 2 223556666666664 566666666653 2355444444443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.19 E-value=4.1 Score=28.95 Aligned_cols=47 Identities=4% Similarity=0.080 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 041882 92 FDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMT 138 (491)
Q Consensus 92 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 138 (491)
.-++++-++.+......|++.+..+.+++|.+.+++..|.++|+-++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33455555555555555666666666666666666666666666554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.13 E-value=12 Score=31.32 Aligned_cols=67 Identities=18% Similarity=0.045 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC
Q 041882 108 RCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 175 (491)
|.-+.+||-+.-.+...|+++.|.+.|+...+.++.-+-...|.-| ++.-.|++.-|.+-+.+.-..
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhc
Confidence 3345677777777777777777777777777755332222222222 222346677666666555443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.97 E-value=0.42 Score=37.61 Aligned_cols=91 Identities=10% Similarity=0.146 Sum_probs=64.9
Q ss_pred CCCCCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041882 40 KTKEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQ 119 (491)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 119 (491)
....+..++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...+.++.... .-...++.
T Consensus 6 ~~~~~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~ 78 (143)
T PF00637_consen 6 DPLEISEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALR 78 (143)
T ss_dssp TTSCSCCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHH
T ss_pred CccCHHHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHH
Confidence 34556778888999999999999999999777667788889999999999887877777762111 22234566
Q ss_pred HHHhcCCHHHHHHHHHHh
Q 041882 120 HYGKAHLVDKAIEVFNRM 137 (491)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~ 137 (491)
.|.+.|.+++|.-++.++
T Consensus 79 ~c~~~~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 79 LCEKHGLYEEAVYLYSKL 96 (143)
T ss_dssp HHHTTTSHHHHHHHHHCC
T ss_pred HHHhcchHHHHHHHHHHc
Confidence 667777777777666654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.56 E-value=11 Score=30.25 Aligned_cols=139 Identities=14% Similarity=0.188 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcC-HHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHH-hHHHH
Q 041882 110 KETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRT-LQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLI-SFNVM 187 (491)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l 187 (491)
+...|...+.. ++.+..++|+.-|..+.+.|...- +-.--.........|+...|...|+++-.....|-.. -...|
T Consensus 58 sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 44555555553 566788888888888887664411 1122233445667788888888888876653333322 11111
Q ss_pred H--HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 041882 188 I--KGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYP 249 (491)
Q Consensus 188 l--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 249 (491)
= -.+...|.++.+..-.+-+...+-+.-...-..|.-+-.+.|++.+|..+|..+......|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 1 1345678888888877777666555555566677777788888888888888887653333
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=88.25 E-value=25 Score=33.73 Aligned_cols=177 Identities=11% Similarity=0.031 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 041882 250 NAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILIN 329 (491)
Q Consensus 250 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 329 (491)
|.....+++..+..+..+.-++.+-.+|...| .+...+..++..|... ..+.-..+|+++.+..+. |.+.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 34444555555666666666666666665553 3444555555555555 345555566666555443 4444444554
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHc
Q 041882 330 YLCKEDRAAEAYKVLTEMQIGGCKP-----NAATYRMMVDGFLRVEDFEGSLKVLNAMLTS-RHCPRLETFSCLLVGLLK 403 (491)
Q Consensus 330 ~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 403 (491)
.|-+ ++...+..+|.++...-++. -...|..+... -..+.+....+..++... |...-...+.-+..-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 55555555555554432110 01123322221 124455555555555543 333334455555566666
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041882 404 GGKVDDACFVLEEMEKRKMRFDLKAWEGLVT 434 (491)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 434 (491)
..++++|++++..+.+.+ .-|...-..++.
T Consensus 218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 218 NENWTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 777777777777666543 224444444444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.82 E-value=1.6 Score=23.93 Aligned_cols=24 Identities=13% Similarity=-0.009 Sum_probs=9.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 395 SCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 395 ~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
..+..+|...|++++|+..|++..
T Consensus 5 ~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 5 YNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHH
Confidence 333333444444444444444333
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.63 E-value=1.5 Score=25.31 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=22.0
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 391 LETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 391 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
..+++.+...|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35677888888888888888888888764
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.49 E-value=40 Score=35.26 Aligned_cols=116 Identities=10% Similarity=0.058 Sum_probs=65.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCCh--hHHHHHHHHHHHcCCCCCHHHHH--
Q 041882 183 SFNVMIKGRLKKGEWEEASRVFDEMLERE---VPPTVVTYNSLIGFLCRTGEM--GKAKGLFEDMIKKGTYPNAVTYA-- 255 (491)
Q Consensus 183 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~-- 255 (491)
-|..|+..|...|+.++|++++.+..... -.--...+..++..+...+.. +-++++-+...+.........+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 46777888888888888888888776632 011112233345555554444 44444444444331111000111
Q ss_pred ----------HHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHh
Q 041882 256 ----------LLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGK 298 (491)
Q Consensus 256 ----------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (491)
..+-.|......+-+..+++.+....-.++....+.++..|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1233456777788888888888776656667777777777664
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.52 E-value=18 Score=30.36 Aligned_cols=164 Identities=12% Similarity=0.064 Sum_probs=90.6
Q ss_pred CCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-cCHHHH
Q 041882 72 SKHS-YPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCV-RTLQSF 149 (491)
Q Consensus 72 ~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 149 (491)
+.|+ +..||.+.-.+...|+++.|.+.|+...+.+..- ..++..-.-.+---|+++-|.+-|.+.-..+.. |-...|
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LW 172 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLW 172 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHH
Confidence 4444 5679999999999999999999999999886332 333332233334568999998877776554321 222233
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-------hhhHHHH
Q 041882 150 NSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPT-------VVTYNSL 222 (491)
Q Consensus 150 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l 222 (491)
--+. -..-++.+|..-+.+--+ ..|..-|...|-.+.- |.+. ...+++++..- -.-+ +.||--+
T Consensus 173 LYl~---E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL 243 (297)
T COG4785 173 LYLN---EQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYL 243 (297)
T ss_pred HHHH---HhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHH
Confidence 2222 233455566544332211 2344445443333221 1111 12233333321 1111 3355566
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc
Q 041882 223 IGFLCRTGEMGKAKGLFEDMIKK 245 (491)
Q Consensus 223 l~~~~~~~~~~~a~~~~~~~~~~ 245 (491)
.+-+...|+.++|..+|+-.+..
T Consensus 244 ~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 244 GKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHhccccHHHHHHHHHHHHHH
Confidence 66777777888888777776654
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.43 E-value=72 Score=37.13 Aligned_cols=152 Identities=7% Similarity=0.072 Sum_probs=97.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCC--CcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 041882 116 SLIQHYGKAHLVDKAIEVFNRMTSFDC--VRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLK 193 (491)
Q Consensus 116 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 193 (491)
.+..+-.+++.+.+|...+++-..... ......|-.+...|..-+++|....+...-.. +...+ .-+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHh
Confidence 445566788999999999998421111 11233444455599999999998888774221 22223 34445677
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCHhHHHH
Q 041882 194 KGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYAL-LMEGLCFKGEYNEAKK 272 (491)
Q Consensus 194 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~ 272 (491)
.|++..|...|+.+.+.+.. ...+++-++..-...|.++.++...+-.... ..+....++. =+.+--+.++||....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 89999999999999987532 4667887777777788888887766665543 2222222322 2344466777777666
Q ss_pred HHH
Q 041882 273 MMF 275 (491)
Q Consensus 273 ~~~ 275 (491)
.+.
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 544
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.25 E-value=8.9 Score=31.80 Aligned_cols=75 Identities=13% Similarity=-0.007 Sum_probs=53.6
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHhcCChhHHH
Q 041882 161 RVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLER---EVPPTVVTYNSLIGFLCRTGEMGKAK 236 (491)
Q Consensus 161 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~ 236 (491)
.-+.|.+.|-++...+.--++.....|.. |....+.+++..++....+. +-.+|+..+..|+..+.+.|+++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34678888888877764445444444444 44466788888888877653 33678888999999999999988875
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.08 E-value=2.4 Score=23.19 Aligned_cols=27 Identities=19% Similarity=0.463 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041882 357 ATYRMMVDGFLRVEDFEGSLKVLNAML 383 (491)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~~~ 383 (491)
.+|..+..++...|++++|+..|++.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 456667777777888888887777765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=85.81 E-value=2.2 Score=25.38 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=14.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 397 LLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 397 l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
+..+|...|+.+.|..+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455566666666666666665543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.72 E-value=14 Score=30.68 Aligned_cols=79 Identities=11% Similarity=0.047 Sum_probs=58.3
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC---CCCCCHHhHHHHHHHHHhcCCh
Q 041882 121 YGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM---GFRPNLISFNVMIKGRLKKGEW 197 (491)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~ 197 (491)
+.+.|+ +.|.+.|-++...+..-++.....|...|. ..+.+++..++....+. +-.+|+..+..|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344444 567888888877765545555555555554 77889999998887765 3367889999999999999999
Q ss_pred HHHH
Q 041882 198 EEAS 201 (491)
Q Consensus 198 ~~a~ 201 (491)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.18 E-value=26 Score=30.93 Aligned_cols=57 Identities=16% Similarity=0.048 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 041882 220 NSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDM 277 (491)
Q Consensus 220 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 277 (491)
+...+.|..+|.+.+|.++.+..++.. +.+...+..++..+...||--.+.+-++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 334444555555555555555554432 224444455555555555544444444333
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.09 E-value=2.7 Score=22.86 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=8.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHH
Q 041882 397 LLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 397 l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
+...+...|++++|.+.|++..
T Consensus 7 lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444444444444444433
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.93 E-value=2.9 Score=22.72 Aligned_cols=26 Identities=8% Similarity=0.400 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041882 358 TYRMMVDGFLRVEDFEGSLKVLNAML 383 (491)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~~~ 383 (491)
.+..+...+...|++++|++.|++.+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45566677777788888887777664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.64 E-value=46 Score=33.29 Aligned_cols=246 Identities=14% Similarity=0.060 Sum_probs=140.2
Q ss_pred hhhHHHHHHHHHHCCCCCCHHhHHHHH----HH-HHhcCChHHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHhc
Q 041882 162 VDDAKRMFDDADKMGFRPNLISFNVMI----KG-RLKKGEWEEASRVFDEMLE-------REVPPTVVTYNSLIGFLCRT 229 (491)
Q Consensus 162 ~~~a~~~~~~~~~~~~~p~~~~~~~ll----~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~ 229 (491)
...+.++++...+.|. ...-..+. .+ +....+.+.|..+|+.+.+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 4578888888777652 22222222 22 4466789999999998876 44 344566777777764
Q ss_pred C-----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHH--hcCC
Q 041882 230 G-----EMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCF-KGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLG--KRGK 301 (491)
Q Consensus 230 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~ 301 (491)
. +.+.|..++...-..|.+ +...+...+.-... ..+...|.++|......|. ++...+.+++-... -..+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCC
Confidence 3 567799999988887654 44333332222222 2467889999999888873 22222222222111 2346
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHH---Hh----cCCHH
Q 041882 302 IEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMM-VDGF---LR----VEDFE 373 (491)
Q Consensus 302 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~---~~----~~~~~ 373 (491)
...|..++++..+.|. |...--...+..+.. ++++.+.-.+..+.+.|... ..+-... +... .. ..+.+
T Consensus 380 ~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~-~q~~a~~l~~~~~~~~~~~~~~~~~~ 456 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV-AQSNAAYLLDQSEEDLFSRGVISTLE 456 (552)
T ss_pred HHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH-HhhHHHHHHHhccccccccccccchh
Confidence 8889999999888872 232222222333333 77777777777666655322 1111111 1111 11 22455
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHcC----CCHHHHHHHHHHHHHCC
Q 041882 374 GSLKVLNAMLTSRHCPRLETFSCLLVGLLKG----GKVDDACFVLEEMEKRK 421 (491)
Q Consensus 374 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~ 421 (491)
.+...+.+....| +......+.+.|... .+++.|...+......+
T Consensus 457 ~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 457 RAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred HHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 6666666666554 344445555554432 34777777777777664
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.54 E-value=2.6 Score=24.29 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041882 217 VTYNSLIGFLCRTGEMGKAKGLFEDMIK 244 (491)
Q Consensus 217 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 244 (491)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666666666666666543
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=83.87 E-value=53 Score=33.38 Aligned_cols=64 Identities=14% Similarity=0.153 Sum_probs=37.1
Q ss_pred hcCCHHHHHHHHHHHHhCCC-CCC-----HHhHHHHHH--HHHcCCCHHHHHHHHH--------HHHHCCCCCCHHHHHH
Q 041882 368 RVEDFEGSLKVLNAMLTSRH-CPR-----LETFSCLLV--GLLKGGKVDDACFVLE--------EMEKRKMRFDLKAWEG 431 (491)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~~-~~~-----~~~~~~l~~--~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~ 431 (491)
-.+++..|...++.+.+..- .|+ ...+..++. .+-..|+.+.|...|. .....+...+...+..
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 46788888888888876411 111 122223333 3345688999999997 4445555545444444
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.31 E-value=0.67 Score=36.46 Aligned_cols=53 Identities=8% Similarity=0.118 Sum_probs=23.2
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 041882 153 LDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFD 205 (491)
Q Consensus 153 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 205 (491)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33344444444444455544443333334444555555555544444444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=82.20 E-value=22 Score=31.21 Aligned_cols=88 Identities=13% Similarity=0.049 Sum_probs=45.9
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh---
Q 041882 152 LLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCR--- 228 (491)
Q Consensus 152 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--- 228 (491)
=|.+++..++|.+++...-+.-+..-+.-......-|-.|.+.+++..+.++-.......-.-+..-|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 36666777777777666555443211112223333344566666666666666665554222233345555554433
Q ss_pred --cCChhHHHHHH
Q 041882 229 --TGEMGKAKGLF 239 (491)
Q Consensus 229 --~~~~~~a~~~~ 239 (491)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 46666665555
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=81.60 E-value=2.4 Score=21.70 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=12.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHH
Q 041882 395 SCLLVGLLKGGKVDDACFVLE 415 (491)
Q Consensus 395 ~~l~~~~~~~g~~~~a~~~~~ 415 (491)
..+..++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345556666666666666554
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.59 E-value=27 Score=29.03 Aligned_cols=94 Identities=9% Similarity=0.044 Sum_probs=69.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHH
Q 041882 81 SLIYKLARARDFDAVETVLGYIQDFNIRCK----ETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDIL 156 (491)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 156 (491)
.=..-+...|+++.|..-|...+..-.+.. ...|..-..++.+.+.++.|+.--.+..+.+.. ...+...-..+|
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeay 178 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAY 178 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHH
Confidence 335567789999999999998887653222 234566667788899999999988888876532 333444445678
Q ss_pred HhCCChhhHHHHHHHHHHC
Q 041882 157 VDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~ 175 (491)
.+...+++|+.-|+++.+.
T Consensus 179 ek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILES 197 (271)
T ss_pred HhhhhHHHHHHHHHHHHHh
Confidence 8888899999999998876
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.31 E-value=12 Score=31.35 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=19.0
Q ss_pred HhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 041882 50 DLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLG 100 (491)
Q Consensus 50 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 100 (491)
.|.+.++.++|+...+.-.+.. +.|...-..+++.++-.|+|++|..-++
T Consensus 10 eLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHH
Confidence 3344444444444443333322 2222233333444444444444443333
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=80.57 E-value=67 Score=32.30 Aligned_cols=77 Identities=8% Similarity=0.052 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 271 KKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQI 349 (491)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 349 (491)
...++.+..+-...+.....-++..|.+.|-.+.+.++.+.+-.+-. ...-|...+..+.+.|+...+..+...+.+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444444432233344455666777777777777777766544322 223455666667777777666666555543
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=80.42 E-value=5.4 Score=21.66 Aligned_cols=27 Identities=15% Similarity=0.021 Sum_probs=20.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 393 TFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466677777778888888888777765
|
... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.30 E-value=32 Score=28.45 Aligned_cols=89 Identities=12% Similarity=0.052 Sum_probs=55.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041882 328 INYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRM-----MVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLL 402 (491)
Q Consensus 328 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 402 (491)
...+...+++++|..-++..... |....+.. +.+.....|.++.|...++...+.++ .......-.+++.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 34566677788887777766542 33333333 33455567778888777776665442 2333444556777
Q ss_pred cCCCHHHHHHHHHHHHHCC
Q 041882 403 KGGKVDDACFVLEEMEKRK 421 (491)
Q Consensus 403 ~~g~~~~a~~~~~~~~~~~ 421 (491)
..|+-++|+.-|++..+.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7888888888888777664
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 89.5 bits (220), Expect = 6e-19
Identities = 29/234 (12%), Positives = 74/234 (31%), Gaps = 5/234 (2%)
Query: 161 RVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFD---EMLEREVPPTVV 217
+D + + K L + A + ++ T+
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166
Query: 218 TYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEA-KKMMFD 276
YN+++ R G + + + G P+ ++YA ++ + + + ++ +
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Query: 277 MAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDR 336
M+ G K Q + VL+S+ + ++ + P V + L+ + +D
Sbjct: 227 MSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286
Query: 337 AAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPR 390
K+ ++ M + + V E + +R +
Sbjct: 287 RVSYPKLHLPLKT-LQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLK 339
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 86.8 bits (213), Expect = 4e-18
Identities = 37/267 (13%), Positives = 82/267 (30%), Gaps = 11/267 (4%)
Query: 65 HRHHQMGSKHSYPSYASLIYKLARARDF-------DAVETVLGYIQDFNIRCKETLFISL 117
R ++ +K P + L R + + E L
Sbjct: 39 MRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARL 98
Query: 118 IQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM-- 175
+Q +D + + Q + + D++ A +
Sbjct: 99 LQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQ 158
Query: 176 -GFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTG-EMG 233
L +N ++ G ++G ++E V + + + P +++Y + + + R + G
Sbjct: 159 KRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAG 218
Query: 234 KAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLM 293
+ E M ++G A+ A+L+ K+ + P VN L+
Sbjct: 219 TIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLL 278
Query: 294 SDLGKRGKIEEAKSLLSEMKKRQYKPD 320
D+ + L +K Q +
Sbjct: 279 RDVYAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 2e-08
Identities = 66/436 (15%), Positives = 117/436 (26%), Gaps = 149/436 (34%)
Query: 65 HRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA 124
H HH M DF+ E Y +D ++ + A
Sbjct: 2 HHHHHM--------------------DFETGEHQYQY-KD------------ILSVFEDA 28
Query: 125 HLVDKAIEVFNRMTSFDCVRTLQSFNSLL------DILVDNDRVDDAKRMFDDADKMGFR 178
+ + FDC S+L I++ D V R+F
Sbjct: 29 FVDN-----------FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 179 PNLISFNVMIKGRLKKG-EWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKG 237
++ L+ ++ S + E + + Y L +
Sbjct: 78 ----MVQKFVEEVLRINYKF-LMSPIKTEQRQPSMMTR--MYIEQRDRLYNDNQ------ 124
Query: 238 LFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFD-MAYRGC-KPQLV-------- 287
+ K Y L + L E AK ++ D + G K +
Sbjct: 125 ----VFAKYNVSRLQPYLKLRQALL---ELRPAKNVLIDGVL--GSGKTWVALDVCLSYK 175
Query: 288 -----NFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYK 342
+F + +L E + EM ++ Y I N+ + D
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPET----VLEMLQKLL------YQIDPNWTSRSDH------ 219
Query: 343 VLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLL 402
+ LR+ + L+ L L S+ CLLV
Sbjct: 220 -------------------SSNIKLRIHSIQAELRRL---LKSKPYEN-----CLLV--- 249
Query: 403 KGGKVDDACFVLEEMEKRKMR-FDLKAWEGLVT--DACIGDGNAGGLVEIRDMRDYSMAI 459
+ + + F+L + L+T + D + + +SM +
Sbjct: 250 ----LLNVQ------NAKAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 460 SSVMNVVDLLWTYLGM 475
+ V LL YL
Sbjct: 299 TP-DEVKSLLLKYLDC 313
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 2e-08
Identities = 67/517 (12%), Positives = 145/517 (28%), Gaps = 162/517 (31%)
Query: 13 FHSQKPKPKPSTKPRRKQN---PQNHKTIRKTKEPIPFVNDLKEIRDPDEALSLFHRHHQ 69
+ Q+ + + K N Q + +R+ L E+R P + + +
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA---------LLELR-PAKNVLI----DG 157
Query: 70 M-GS-KHSYPSYASLIYKLARARDF----------DAVETVLGYIQDFNIRCKETLFISL 117
+ GS K L YK+ DF ++ ETVL +Q +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 118 IQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAK--RMFD----- 170
+ R+ +++ N LL +L N V +AK F+
Sbjct: 218 DHSSNIKLRIHSIQAELRRL-----LKSKPYENCLL-VL-LN--VQNAKAWNAFNLSCKI 268
Query: 171 -----DADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLE---REVPPTVVTYN-- 220
F + ++ + +E + + L+ +++P V+T N
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 221 --SLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMA 278
S+I R D + +K + + + +
Sbjct: 329 RLSIIAESIR------------DGLATWDN--------------WKHVNCDKLTTIIESS 362
Query: 279 YRGCKP-----QLVNFGVLMSDLGKRGKI--------------EEAKSLLSEMKK----- 314
+P V I + +++++ K
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSA----HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 315 RQYKPDVVT-YNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFE 373
+Q K ++ +I + K + ++ + + Y + D +
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVD-----------HYN-----IPKTFDSD 462
Query: 374 GSLKVLNA----------MLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMR 423
+ + H R+ F + + D F+ ++K+R
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL---------DFRFL-----EQKIR 508
Query: 424 FDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAIS 460
D AW + + L ++ ++ Y I
Sbjct: 509 HDSTAW----------NASGSILNTLQQLKFYKPYIC 535
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 29/179 (16%), Positives = 53/179 (29%), Gaps = 26/179 (14%)
Query: 193 KKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPN-A 251
+ E + A + + L + N+ GFL +A + + YP +
Sbjct: 83 TEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERS 141
Query: 252 VTYALLMEGLCFK--GEYNEAKKMMFDMAYRGCKPQ----LVNFGVLMSDLGKRGKIEEA 305
+ L GL + +AK+ F+ + R + L L K + A
Sbjct: 142 RVFENL--GLVSLQMKKPAQAKE-YFEKSLR-LNRNQPSVALEMADL---LYKEREYVPA 194
Query: 306 KSLLSEMKKRQYKPD-VVTYNILINYLC---KEDRAAEAYKVLTEMQIGGCKPNAATYR 360
+ Q + + I D AA L + P + Y+
Sbjct: 195 RQYYD--LFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL-----YPGSLEYQ 246
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 2e-04
Identities = 33/216 (15%), Positives = 75/216 (34%), Gaps = 17/216 (7%)
Query: 49 NDLKEIRDPD-EALSLFHRHHQMGSKH------------SYPSYASLIYKLARARDFDAV 95
+++K P+ +A+ +F + S+ + + L A +
Sbjct: 55 DEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD 114
Query: 96 ETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTL-QSFNSLLD 154
+ ++ + +Q K +D A + +M D TL Q + +
Sbjct: 115 QNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVS 174
Query: 155 ILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPP 214
+ +++ DA +F + P L+ N + +G WE A V E L+++
Sbjct: 175 LAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232
Query: 215 TVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPN 250
T +L+ G+ + + +K + +
Sbjct: 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD-AHRS 267
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 6e-04
Identities = 34/154 (22%), Positives = 55/154 (35%), Gaps = 16/154 (10%)
Query: 193 KKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPN-A 251
+ G++E A R ++ +E P L + + ++ IK+ P A
Sbjct: 11 QAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLA 67
Query: 252 VTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLV----NFGVLMSDLGKRGKIEEAKS 307
Y+ L +G+ EA + + A R KP + N L G +E A
Sbjct: 68 EAYSNLGNVYKERGQLQEAIE-HYRHALR-LKPDFIDGYINLAAA---LVAAGDMEGAVQ 122
Query: 308 LLSEMKKRQYKPDVV-TYNILINYLCKEDRAAEA 340
+ Y PD+ + L N L R EA
Sbjct: 123 AYVSALQ--YNPDLYCVRSDLGNLLKALGRLEEA 154
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 491 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.7 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.7 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.69 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.69 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.67 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.66 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.65 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.65 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.65 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.64 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.64 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.64 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.63 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.63 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.63 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.61 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.61 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.61 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.6 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.56 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.55 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.55 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.54 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.53 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.52 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.5 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.5 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.5 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.49 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.49 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.49 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.47 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.46 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.46 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.43 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.43 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.41 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.38 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.37 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.34 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.33 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.3 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.27 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.26 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.23 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.22 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.18 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.16 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.15 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.14 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.08 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.07 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.07 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.05 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.05 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.05 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.04 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.04 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.03 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.03 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.02 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.0 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.99 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.99 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.97 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.95 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.95 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.95 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.93 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.93 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.92 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.91 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.91 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.89 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.86 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.83 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.83 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.81 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.74 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.74 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.74 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.71 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.7 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.7 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.66 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.65 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.64 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.64 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.63 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.62 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.61 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.6 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.59 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.58 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.58 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.58 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.58 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.56 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.56 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.55 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.55 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.55 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.55 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.54 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.54 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.53 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.53 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.51 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.48 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.47 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.44 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.43 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.42 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.41 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.4 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.39 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.37 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.37 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.36 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.36 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.34 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.33 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.32 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.32 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.31 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.3 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.29 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.29 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.28 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.27 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.27 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.24 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.23 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.23 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.22 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.11 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.1 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.1 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.09 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.07 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.04 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.03 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.02 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.0 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.0 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.99 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.97 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.97 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.95 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.93 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.85 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.76 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.75 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.75 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.74 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.73 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.7 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.68 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.67 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.67 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.63 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.61 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.59 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.55 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.51 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.41 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.27 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.23 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.08 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.82 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.78 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.73 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.61 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.51 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.46 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.45 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.4 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.36 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.24 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.17 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.02 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.94 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.93 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.84 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.75 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.69 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.53 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.39 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.37 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.17 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.88 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.74 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.35 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.73 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.69 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.54 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.37 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 92.3 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.27 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.97 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.91 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.5 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.27 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.69 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 90.62 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.07 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 88.57 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 88.28 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 87.11 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 86.77 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.42 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 86.21 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 85.85 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 84.67 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 83.53 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 83.11 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 83.06 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 82.49 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 81.49 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 81.34 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-39 Score=322.04 Aligned_cols=430 Identities=10% Similarity=-0.017 Sum_probs=377.5
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA 124 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (491)
..++..+.+.|++++|+.+|+++.. ..|+..++..++..|.+.|++++|..+++.+... +++..+++.++.+|.+.
T Consensus 88 ~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 163 (597)
T 2xpi_A 88 RLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKL 163 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHH
Confidence 4577788889999999999999985 4578889999999999999999999999988654 67899999999999999
Q ss_pred CCHHHHHHHHHHhhhC---------------CCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHH--
Q 041882 125 HLVDKAIEVFNRMTSF---------------DCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVM-- 187 (491)
Q Consensus 125 ~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-- 187 (491)
|++++|+++|+++... +.+.+..+|+.++.+|.+.|++++|+++|+++.+.+.. +...+..+
T Consensus 164 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~ 242 (597)
T 2xpi_A 164 YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVS 242 (597)
T ss_dssp TCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHH
Confidence 9999999999964332 22346889999999999999999999999999886422 23333322
Q ss_pred ------------------------------------HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 041882 188 ------------------------------------IKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGE 231 (491)
Q Consensus 188 ------------------------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 231 (491)
+..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|+
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 320 (597)
T 2xpi_A 243 NHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSR 320 (597)
T ss_dssp TTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTC
T ss_pred hhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcC
Confidence 44566788999999999998875 5799999999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHH
Q 041882 232 MGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSE 311 (491)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 311 (491)
+++|.++|+++.+.+.. +..++..++.++.+.|++++|..+++.+.+.. +.+..++..++.+|.+.|++++|.++|++
T Consensus 321 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 321 FIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp HHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999987543 77789999999999999999999999998764 56788999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 041882 312 MKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRL 391 (491)
Q Consensus 312 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 391 (491)
+.+.... +..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.. +.+.
T Consensus 399 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 475 (597)
T 2xpi_A 399 SSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDP 475 (597)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 9886544 78899999999999999999999999998864 5678899999999999999999999999999864 3478
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHH
Q 041882 392 ETFSCLLVGLLKGGKVDDACFVLEEMEKR----KMRFD--LKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNV 465 (491)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~ 465 (491)
.+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..++++.|+.+++.+.++++.+.+ |++...+
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~ 553 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--TNDANVH 553 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SCCHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHH
Confidence 89999999999999999999999999876 66787 7899999999999999999999999988776 8889999
Q ss_pred HHHHHHhcCCCcchhhhhHhhhh
Q 041882 466 VDLLWTYLGMGTCVVIDLFQKRE 488 (491)
Q Consensus 466 ~~l~~~~~~~g~~~~~~~~~k~~ 488 (491)
..++..|...|+++++..+.++.
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999998886653
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-36 Score=299.38 Aligned_cols=417 Identities=13% Similarity=0.054 Sum_probs=364.7
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc---------------CCCC
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDF---------------NIRC 109 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------~~~~ 109 (491)
..+...+...|++++|+.+|+.+.. .+++..++..++..+.+.|++++|.++|+.+... +.+.
T Consensus 121 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (597)
T 2xpi_A 121 FWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKL 198 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccch
Confidence 3466778889999999999998865 3688999999999999999999999999853221 2234
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHH-------------------------------------
Q 041882 110 KETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSL------------------------------------- 152 (491)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------------------------------- 152 (491)
+..+++.++..|.+.|++++|+++|+++...+.. +...+..+
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 277 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYML 277 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHH
Confidence 5789999999999999999999999999876532 44444433
Q ss_pred -HHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 041882 153 -LDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGE 231 (491)
Q Consensus 153 -l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 231 (491)
+..|.+.|++++|.++|+++.+. .++..+++.++.+|.+.|++++|.++|+++.+.+.. +..+++.++.++.+.|+
T Consensus 278 ~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 354 (597)
T 2xpi_A 278 KLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGE 354 (597)
T ss_dssp TSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTC
T ss_pred HHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCC
Confidence 44556778999999999998865 578999999999999999999999999999987644 78899999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHH
Q 041882 232 MGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSE 311 (491)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 311 (491)
+++|..+++++.+.. +.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|++
T Consensus 355 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 355 KNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998763 4478899999999999999999999999998864 45678999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 041882 312 MKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS----RH 387 (491)
Q Consensus 312 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~ 387 (491)
+.+.+.. +..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+. +.
T Consensus 433 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 433 AARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 9987554 78899999999999999999999999998764 567899999999999999999999999999886 55
Q ss_pred CCC--HHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHH
Q 041882 388 CPR--LETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNV 465 (491)
Q Consensus 388 ~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~ 465 (491)
.|+ ..+|..++.+|.+.|++++|.++++++.+.+ ..+..+|..+..++...|+.+++.+.++++.+.. |++...+
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~ 587 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS--PNEIMAS 587 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCChHHH
Confidence 677 7899999999999999999999999999864 3478999999999999999999999999888765 9999999
Q ss_pred HHHHHHhcC
Q 041882 466 VDLLWTYLG 474 (491)
Q Consensus 466 ~~l~~~~~~ 474 (491)
..++.+|..
T Consensus 588 ~~l~~~~~~ 596 (597)
T 2xpi_A 588 DLLKRALEE 596 (597)
T ss_dssp HHHHHTTC-
T ss_pred HHHHHHHhc
Confidence 999988754
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-29 Score=235.05 Aligned_cols=361 Identities=16% Similarity=0.074 Sum_probs=177.7
Q ss_pred hHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041882 47 FVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHL 126 (491)
Q Consensus 47 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 126 (491)
+...+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3444555566666666665555432 3334445555555555666666666665555544 4455556666666666666
Q ss_pred HHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCChHHHHHHHH
Q 041882 127 VDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPN-LISFNVMIKGRLKKGEWEEASRVFD 205 (491)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~ 205 (491)
+++|+..|+++.... +.+..+|..+..++...|++++|.+.|+++.+.. |+ ...+..+...+...|++++|.+.|+
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 666666666555443 1234455555555555566666666555555442 22 2334444455555555555555555
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 041882 206 EMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQ 285 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 285 (491)
++.+.... +..+|..+...+...|++++|...|+++.+.+.. +...+..+...+...|++++|...+++..... +.+
T Consensus 160 ~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 160 KAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 55544221 3445555555555555555555555555544222 34444444555555555555555555444432 222
Q ss_pred hhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041882 286 LVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDG 365 (491)
Q Consensus 286 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 365 (491)
..++..+..++.+.|++++|...|+++.+.++. +..+|..+...+.+.|++++|.+.++++.+.. +.+..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 344444444444444444444444444443222 33444444444444444444444444444332 3334444444444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 366 FLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 366 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|...++++.
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444321 1223344444444444444444444444444
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-28 Score=231.54 Aligned_cols=384 Identities=12% Similarity=0.031 Sum_probs=338.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCC
Q 041882 82 LIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDR 161 (491)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 161 (491)
+...+.+.|++++|.+.++.+.+.. |.+...+..+...+...|++++|...++...... +.+..+|..+..++...|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3556778999999999999998876 6677888889999999999999999999988765 4488999999999999999
Q ss_pred hhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 041882 162 VDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFED 241 (491)
Q Consensus 162 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 241 (491)
+++|+..|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998763 224567999999999999999999999999887433 566788889999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 041882 242 MIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDV 321 (491)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 321 (491)
+.+.... +..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++.....+. +.
T Consensus 161 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~ 237 (388)
T 1w3b_A 161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CH
Confidence 9987433 67899999999999999999999999999875 455778889999999999999999999999887554 78
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041882 322 VTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGL 401 (491)
Q Consensus 322 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 401 (491)
.++..+...|...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 899999999999999999999999999864 4567889999999999999999999999999863 45788999999999
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCc
Q 041882 402 LKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGT 477 (491)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~ 477 (491)
...|++++|...++++.+. .+.+...+..+...++..|+.++++..++++.+. .|++...+..+++++..+|+
T Consensus 316 ~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999975 2345789999999999999999999999988875 49999999999999988774
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-30 Score=249.59 Aligned_cols=212 Identities=13% Similarity=0.198 Sum_probs=110.9
Q ss_pred HHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 041882 200 ASRVFDEMLEREVPPTV-VTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMA 278 (491)
Q Consensus 200 a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (491)
+..+.+.+.+.+....+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+...++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence 44455555555544333 246666677777777777777777777777777777777777766655432110
Q ss_pred HcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 041882 279 YRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAAT 358 (491)
Q Consensus 279 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 358 (491)
.+.+.++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 81 ------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 142 (501)
T 4g26_A 81 ------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS 142 (501)
T ss_dssp ------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred ------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce
Confidence 01112344555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041882 359 YRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDAC 437 (491)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 437 (491)
|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.+++++|.+.|..|+..||+.++..++
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555555555444
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=249.84 Aligned_cols=203 Identities=15% Similarity=0.131 Sum_probs=130.9
Q ss_pred HHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCC---------hhhH
Q 041882 96 ETVLGYIQDFNIRCKE-TLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDR---------VDDA 165 (491)
Q Consensus 96 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~~a 165 (491)
..+.+.+.+.+....+ .+++.+|++|++.|++++|+++|++|.+.|+.||..+||.||.+|+..+. .+.|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 3334444444443333 34566666666666666666666666666666666666666666665443 4566
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041882 166 KRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK 245 (491)
Q Consensus 166 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 245 (491)
.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHh
Q 041882 246 GTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGK 298 (491)
Q Consensus 246 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (491)
|+.||..||+++|.+|++.|+.++|.+++++|.+.+..|+..||+.++..|..
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777777777777666654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.5e-24 Score=207.04 Aligned_cols=415 Identities=10% Similarity=0.015 Sum_probs=316.9
Q ss_pred chHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 041882 46 PFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAH 125 (491)
Q Consensus 46 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 125 (491)
.....+...|++++|+..|+++...+ |+...+..+..++.+.|++++|.+.++.+.+.+ +.+..++..+..++...|
T Consensus 11 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 11 DKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHh
Confidence 34566788899999999999999865 689999999999999999999999999999887 667889999999999999
Q ss_pred CHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHH----------------------------------
Q 041882 126 LVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDD---------------------------------- 171 (491)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~---------------------------------- 171 (491)
++++|+..|+++...+. ++......++..+........+.+.+..
T Consensus 88 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp CHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 99999999999988763 2433444444433332222222111111
Q ss_pred -HHHCCCC--------C-CHHhHHHHHHHHHh---cCChHHHHHHHHHHHh-----CCC--------CCChhhHHHHHHH
Q 041882 172 -ADKMGFR--------P-NLISFNVMIKGRLK---KGEWEEASRVFDEMLE-----REV--------PPTVVTYNSLIGF 225 (491)
Q Consensus 172 -~~~~~~~--------p-~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~ll~~ 225 (491)
+...... | +...+......+.. .|++++|..+|+++.+ ... +.+..++..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 1000000 1 13333344444443 7899999999999887 311 2235677888889
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHH
Q 041882 226 LCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEA 305 (491)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 305 (491)
+...|++++|...++++.+.... ..++..+..++...|++++|...++.+.... +.+...+..+...+...|++++|
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999887544 7788888899999999999999999988764 44667788888999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 306 KSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 385 (491)
...++.+.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 324 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 324 GKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999887554 67788888899999999999999999988753 445678888888999999999999999988874
Q ss_pred CCC-CC----HHhHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhh
Q 041882 386 RHC-PR----LETFSCLLVGLLK---GGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSM 457 (491)
Q Consensus 386 ~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~ 457 (491)
... ++ ...+..+..++.. .|++++|...++++.+.. ..+...+..+...+...|+.+++...+++..+..
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~- 479 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA- 479 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc-
Confidence 211 11 3378888899999 999999999999988753 3357788888888999999999999998877765
Q ss_pred hhhhhHHHHHHHHHh
Q 041882 458 AISSVMNVVDLLWTY 472 (491)
Q Consensus 458 ~~~~~~~~~~l~~~~ 472 (491)
|++...+..+.+..
T Consensus 480 -~~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 480 -RTMEEKLQAITFAE 493 (514)
T ss_dssp -SSHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHH
Confidence 77666666555443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-23 Score=205.66 Aligned_cols=374 Identities=13% Similarity=0.034 Sum_probs=292.9
Q ss_pred CcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 041882 44 PIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGK 123 (491)
Q Consensus 44 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (491)
+..+...+...|++++|+..|+.+.+.+ +.+..++..+..++.+.|++++|...|+.+...+ +++......++..+..
T Consensus 42 ~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 119 (514)
T 2gw1_A 42 YSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLN 119 (514)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHH
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHH
Confidence 3446677788999999999999999865 5677899999999999999999999999999887 4444444444444433
Q ss_pred cCCHHHHHHHHHHhh-----------------------------------hCCC---------CcCHHHHHHHHHHHHh-
Q 041882 124 AHLVDKAIEVFNRMT-----------------------------------SFDC---------VRTLQSFNSLLDILVD- 158 (491)
Q Consensus 124 ~~~~~~a~~~~~~~~-----------------------------------~~~~---------~~~~~~~~~ll~~~~~- 158 (491)
......+.+.+..+. .... +.+...+......+..
T Consensus 120 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (514)
T 2gw1_A 120 KQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYK 199 (514)
T ss_dssp HHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 322222222221110 0000 1124455555555554
Q ss_pred --CCChhhHHHHHHHHHH-----CCCCC--------CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 041882 159 --NDRVDDAKRMFDDADK-----MGFRP--------NLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLI 223 (491)
Q Consensus 159 --~~~~~~a~~~~~~~~~-----~~~~p--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 223 (491)
.|++++|...|+++.+ ....| +...+..+...+...|++++|...|+.+.+.... ...+..+.
T Consensus 200 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~ 277 (514)
T 2gw1_A 200 RSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMA 277 (514)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHH
Confidence 8999999999999987 31122 3456778888999999999999999999887543 88899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChH
Q 041882 224 GFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIE 303 (491)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 303 (491)
.++...|++++|...++.+.+.... +..++..+...+...|++++|...++...+.. +.+...+..+...+...|+++
T Consensus 278 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 355 (514)
T 2gw1_A 278 LIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFD 355 (514)
T ss_dssp HHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999886433 67788899999999999999999999998875 445678888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHh---cCCHHHH
Q 041882 304 EAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGC-KPN----AATYRMMVDGFLR---VEDFEGS 375 (491)
Q Consensus 304 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~---~~~~~~a 375 (491)
+|...++.+.+.... +...+..+...+...|++++|...++++.+... .++ ...+..+...+.. .|++++|
T Consensus 356 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A 434 (514)
T 2gw1_A 356 DCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEA 434 (514)
T ss_dssp HHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHH
T ss_pred HHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHH
Confidence 999999999887544 677889999999999999999999999876421 111 3478888999999 9999999
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 041882 376 LKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLK 427 (491)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 427 (491)
...++++.+.. +.+...+..+..+|.+.|++++|...++++.+. .|+..
T Consensus 435 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~ 483 (514)
T 2gw1_A 435 TNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTME 483 (514)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccH
Confidence 99999999864 346788899999999999999999999999975 44433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-23 Score=196.95 Aligned_cols=304 Identities=13% Similarity=0.094 Sum_probs=195.4
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHH
Q 041882 73 KHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSL 152 (491)
Q Consensus 73 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 152 (491)
+.+...+..+...+.+.|++++|.++|+.+.+.. +.+..++..+...+...|++++|+..|+++...+. .+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHH
Confidence 3445566667777777777777777777777654 45667777777777777777777777777766542 256677777
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCH----HhHHHH------------HHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 041882 153 LDILVDNDRVDDAKRMFDDADKMGFRPNL----ISFNVM------------IKGRLKKGEWEEASRVFDEMLEREVPPTV 216 (491)
Q Consensus 153 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 216 (491)
..++...|++++|...|+++.+.. |+. ..+..+ ...+...|++++|...|+.+.+... .+.
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~ 177 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDA 177 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCh
Confidence 777777777777777777776643 332 344333 3336667777777777777766532 256
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHH----
Q 041882 217 VTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVL---- 292 (491)
Q Consensus 217 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---- 292 (491)
..+..+..+|...|++++|...|+++.+... .+..++..+..+|...|++++|...++.+.... +.+...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 6677777777777777777777777766532 256677777777777777777777777776552 2223333332
Q ss_pred --------HHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 041882 293 --------MSDLGKRGKIEEAKSLLSEMKKRQYKPD----VVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYR 360 (491)
Q Consensus 293 --------l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 360 (491)
...+.+.|++++|...|+.+.+..+. + ..+|..+...+.+.|++++|...++++.+.. +.+..++.
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 55666666666666666666654322 2 2355666666666666666666666665532 33556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 361 MMVDGFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~~~~~ 385 (491)
.+..+|...|++++|...++++.+.
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 6666666666666666666666663
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-22 Score=195.32 Aligned_cols=327 Identities=13% Similarity=0.061 Sum_probs=268.3
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHH
Q 041882 95 VETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADK 174 (491)
Q Consensus 95 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 174 (491)
+...+..+.... +.+...+..++..+.+.|++++|+.+|+++.... +.+..+|..+..++...|++++|+..|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 333444444443 5677889999999999999999999999998764 34789999999999999999999999999988
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh---hhHHHH------------HHHHHhcCChhHHHHHH
Q 041882 175 MGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTV---VTYNSL------------IGFLCRTGEMGKAKGLF 239 (491)
Q Consensus 175 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~~~~~~a~~~~ 239 (491)
.+ +.+...+..+..++.+.|++++|.+.|+.+.+.... +. ..+..+ ...+...|++++|+..|
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 75 335788899999999999999999999999986432 34 555555 44488999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 041882 240 EDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKP 319 (491)
Q Consensus 240 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 319 (491)
+++.+... .+..++..+..+|...|++++|...++.+.+.. +.+..++..+..++...|++++|...|+++....+.
T Consensus 167 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~- 243 (450)
T 2y4t_A 167 DKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD- 243 (450)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 99998743 378889999999999999999999999998864 556788999999999999999999999999886544
Q ss_pred CHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041882 320 DVVTYNIL------------INYLCKEDRAAEAYKVLTEMQIGGCKPN-----AATYRMMVDGFLRVEDFEGSLKVLNAM 382 (491)
Q Consensus 320 ~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~ 382 (491)
+...+..+ ...+...|++++|...|+++.+. .|+ ...+..+..++.+.|++++|...++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 321 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55555555 78899999999999999999874 344 447888889999999999999999999
Q ss_pred HhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 041882 383 LTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFD-LKAWEGLV 433 (491)
Q Consensus 383 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll 433 (491)
.+.. +.+...|..+..+|...|++++|...++++.+. .|+ ...+..+.
T Consensus 322 ~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 322 LQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred HHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 8853 346889999999999999999999999999974 444 55555555
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-22 Score=194.86 Aligned_cols=398 Identities=11% Similarity=0.037 Sum_probs=275.9
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA 124 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (491)
......+...|++++|+..|+++.+.. +.+..++..+...+.+.|++++|.+.++.+.+.+ +.+...+..+...+...
T Consensus 29 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHc
Confidence 345566788899999999999998765 5678899999999999999999999999999887 66788999999999999
Q ss_pred CCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC------CCCCCHHhH--------------
Q 041882 125 HLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM------GFRPNLISF-------------- 184 (491)
Q Consensus 125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~p~~~~~-------------- 184 (491)
|++++|+..|+.+.. . |+ .....+..+...+....|...++++... ...|+....
T Consensus 107 g~~~~A~~~~~~~~~-~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 107 GNFTDAMFDLSVLSL-N--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp TCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHHHHhc-C--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 999999999974422 1 22 1122233444444556666666666432 111221111
Q ss_pred ----------------HHHHHHHH--------hcCChHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCChh
Q 041882 185 ----------------NVMIKGRL--------KKGEWEEASRVFDEMLEREVPPTV-------VTYNSLIGFLCRTGEMG 233 (491)
Q Consensus 185 ----------------~~ll~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~ 233 (491)
..+...+. ..|++++|..+++.+.+.... +. .++..+...+...|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHH
Confidence 11111111 124677788888887765322 22 24556667777788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 041882 234 KAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMK 313 (491)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 313 (491)
+|...++.+.+.. |+..++..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.
T Consensus 261 ~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 261 DAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8888888887753 446677777788888888888888888877764 4456677778888888888888888888887
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CC
Q 041882 314 KRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSR-----HC 388 (491)
Q Consensus 314 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~ 388 (491)
+..+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. ..
T Consensus 338 ~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 338 SLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp HHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence 76544 56677778888888888888888888877653 4456677777888888888888888888877642 11
Q ss_pred CCHHhHHHHHHHHHcC----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhh
Q 041882 389 PRLETFSCLLVGLLKG----------GKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYS 456 (491)
Q Consensus 389 ~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~ 456 (491)
.....+.....++... |++++|...++++.+.. +.+...+..+...+...|+.+++...+++..+..
T Consensus 416 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 1122244445666666 88888888888887652 2356777778888888888888888887776654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8.7e-22 Score=193.54 Aligned_cols=398 Identities=12% Similarity=0.055 Sum_probs=308.3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHH
Q 041882 76 YPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDI 155 (491)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 155 (491)
...+..+...+.+.|++++|.+.|+.+.+.. +.+...+..+..++.+.|++++|++.|+++...+. .+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 4567888899999999999999999999887 67889999999999999999999999999988763 478899999999
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC------CCCChh------------
Q 041882 156 LVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLERE------VPPTVV------------ 217 (491)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~------------ 217 (491)
+...|++++|...|+.+ .. .|+. ....+..+...+....|...++.+.... ..|+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 99999999999999743 22 2332 2223344555555677888887775431 111111
Q ss_pred ------------------hHHHHHHHHHh--------cCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhc
Q 041882 218 ------------------TYNSLIGFLCR--------TGEMGKAKGLFEDMIKKGTYPNA-------VTYALLMEGLCFK 264 (491)
Q Consensus 218 ------------------~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~ 264 (491)
....+...+.. .|++++|..+++++.+.... +. .++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhc
Confidence 11222222211 24789999999999876433 32 3466677788899
Q ss_pred CCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041882 265 GEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVL 344 (491)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 344 (491)
|++++|...++...+. .|+...+..+...+...|++++|...++.+.+.... +..++..+...+...|++++|...+
T Consensus 257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999987 455788888999999999999999999999987654 7889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC--
Q 041882 345 TEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKM-- 422 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-- 422 (491)
+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+...
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 9998764 4456788899999999999999999999999864 34577889999999999999999999999875421
Q ss_pred ---CCCHHHHHHHHHHHHhc----------CCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhhHhhhh
Q 041882 423 ---RFDLKAWEGLVTDACIG----------DGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDLFQKRE 488 (491)
Q Consensus 423 ---~~~~~~~~~ll~~~~~~----------~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~~ 488 (491)
......+......+... |+.++++..+++..+.. |++...+..++++|...|++.++..+.++.
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD--PRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11222233444556666 88889999998877664 888999999999999999999998876653
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-19 Score=168.30 Aligned_cols=325 Identities=12% Similarity=0.054 Sum_probs=169.3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHH
Q 041882 76 YPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDI 155 (491)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 155 (491)
...+..+...+...|++++|.+.++.+.+.. +.+..++..+...+...|++++|+..|+++..... .+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHH
Confidence 3455566666666677777777776666654 44566666666666666777777777666665432 255666666666
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCC----CHHhHHHH------------HHHHHhcCChHHHHHHHHHHHhCCCCCChhhH
Q 041882 156 LVDNDRVDDAKRMFDDADKMGFRP----NLISFNVM------------IKGRLKKGEWEEASRVFDEMLEREVPPTVVTY 219 (491)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~~~~~p----~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 219 (491)
+...|++++|...|+++.+.. | +...+..+ ...+...|++++|.++++.+.+... .+...+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 157 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELR 157 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHH
Confidence 666677777777766666542 3 22222222 2344455555555555555544322 244444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhc
Q 041882 220 NSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKR 299 (491)
Q Consensus 220 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 299 (491)
..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++...+.. +.+...+..+
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~------- 228 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHY------- 228 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH-------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHH-------
Confidence 555555555555555555555554432 1234444445555555555555555555444432 1111111100
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHH
Q 041882 300 GKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA----ATYRMMVDGFLRVEDFEGS 375 (491)
Q Consensus 300 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a 375 (491)
..+. .......+...+.+.|++++|...++++.+.. +.+. ..+..+..++...|++++|
T Consensus 229 ----------~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 229 ----------KQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp ----------HHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ----------HHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 0000 00011122444556666666666666665532 1122 1233445566666666666
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 041882 376 LKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFD-LKAWEGLVT 434 (491)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~ 434 (491)
...++++.+.. +.+...+..+..++...|++++|...|+++.+. .|+ ...+..+..
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEK 348 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHH
Confidence 66666666642 224556666666666666666666666666654 233 344444443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-19 Score=165.00 Aligned_cols=334 Identities=9% Similarity=-0.013 Sum_probs=225.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 041882 111 ETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKG 190 (491)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 190 (491)
...+..+...+...|++++|+..|+++..... .+..++..+..++...|++++|...++++.+.. +-+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 34556666667777777777777777665542 256666677777777777777777777766543 2244566666666
Q ss_pred HHhcCChHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHh
Q 041882 191 RLKKGEWEEASRVFDEMLEREVP--PTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYN 268 (491)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 268 (491)
+...|++++|...|+.+.+.... .+...+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 66777777777777766654220 12223322211100 001222345666777777
Q ss_pred HHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041882 269 EAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQ 348 (491)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 348 (491)
+|...++.+.+.. +.+...+..+...+...|++++|...++.+.+..+. +...+..+...+...|++++|...+++..
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777766654 345566666777777777777777777777665433 66677777777777777777777777776
Q ss_pred hCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHcCCCHHHHHH
Q 041882 349 IGGCKPNAATYR------------MMVDGFLRVEDFEGSLKVLNAMLTSRHCPRL----ETFSCLLVGLLKGGKVDDACF 412 (491)
Q Consensus 349 ~~~~~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~ 412 (491)
+.. +.+...+. .+...+...|++++|...++++.+... .+. ..+..+..++...|++++|..
T Consensus 216 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 542 22333322 236678899999999999999998642 223 235567889999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCC
Q 041882 413 VLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMG 476 (491)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g 476 (491)
.++++.+.. +.+...|..+...+...|+.+++...+++..+.. |++......+...+...+
T Consensus 294 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 294 ICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN--ENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHH
Confidence 999999862 3378899999999999999999999999888765 888888888887766544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-17 Score=156.83 Aligned_cols=367 Identities=11% Similarity=0.038 Sum_probs=206.4
Q ss_pred CHHhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCcCH
Q 041882 75 SYPSYASLIYKLAR----ARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGK----AHLVDKAIEVFNRMTSFDCVRTL 146 (491)
Q Consensus 75 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 146 (491)
+..++..+...+.. .++++.|.+.|+...+.+ +...+..|...|.. .+++++|++.|++..+.+ +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44555555555555 566666666666665543 34555556666665 566666666666665543 44
Q ss_pred HHHHHHHHHHHh----CCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCChhh
Q 041882 147 QSFNSLLDILVD----NDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLK----KGEWEEASRVFDEMLEREVPPTVVT 218 (491)
Q Consensus 147 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 218 (491)
..+..|...|.. .+++++|+..|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 555556666655 556666666666665543 34445555555554 556666666666665543 4555
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCChhcHH
Q 041882 219 YNSLIGFLCR----TGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCF----KGEYNEAKKMMFDMAYRGCKPQLVNFG 290 (491)
Q Consensus 219 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (491)
+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .+++++|..+|+...+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5566666655 566666666666665543 34455555555554 556666666666655543 233444
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 041882 291 VLMSDLGK----RGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKE-----DRAAEAYKVLTEMQIGGCKPNAATYRM 361 (491)
Q Consensus 291 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (491)
.+...|.. .++.++|...|+...+.+ +...+..+...|... +++++|...+++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 44445554 566666666666665542 444555555555554 56666666666665543 3344444
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041882 362 MVDGFLRVE---DFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLK----GGKVDDACFVLEEMEKRKMRFDLKAWEGLVT 434 (491)
Q Consensus 362 li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 434 (491)
+...+...| ++++|.+.|++..+.+ +...+..+...|.. .+++++|..+|++..+.| +...+..+..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 555555434 5566666666666643 44555556666655 566666666666666554 3445555555
Q ss_pred HHHh----cCCCcchhHHHHHHhhhhhh-hhhhHHHHHHHHH
Q 041882 435 DACI----GDGNAGGLVEIRDMRDYSMA-ISSVMNVVDLLWT 471 (491)
Q Consensus 435 ~~~~----~~~~~~~~~~~~~m~~~~~~-~~~~~~~~~l~~~ 471 (491)
.+.. .++..++...+++..+.+.. |++......++..
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 4444 45555555555555554422 3344444444443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.4e-19 Score=162.57 Aligned_cols=269 Identities=10% Similarity=-0.010 Sum_probs=138.5
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHH
Q 041882 74 HSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLL 153 (491)
Q Consensus 74 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 153 (491)
.+...+..+...+...|++++|.++++.+.+.. +.+...+..++..+...|++++|..+++++..... .+..+|..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 344455555555556666666666666655544 33444455555555566666666666666555432 2445555555
Q ss_pred HHHHhCC-ChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 041882 154 DILVDND-RVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEM 232 (491)
Q Consensus 154 ~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 232 (491)
..+...| ++++|...|+++.+.. +.+...+..+..++...|++++|.+.++++.+.... +...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 6666666 5666666666655442 123445555555566666666666666655554322 334455555555566666
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC--------CCCChhcHHHHHHHHHhcCChHH
Q 041882 233 GKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRG--------CKPQLVNFGVLMSDLGKRGKIEE 304 (491)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~ll~~~~~~~~~~~ 304 (491)
++|...++++.+... .+..++..+...+...|++++|...++...+.. .+.....+..+..++...|++++
T Consensus 176 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 666666665555422 244555555555555555555555555554421 01122344444444444445555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041882 305 AKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQ 348 (491)
Q Consensus 305 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 348 (491)
|...++++.+.... +...+..+...+...|++++|.+.+++..
T Consensus 255 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 255 ALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 54444444443222 33444444444444444444444444443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.2e-19 Score=160.76 Aligned_cols=286 Identities=10% Similarity=-0.018 Sum_probs=183.1
Q ss_pred cCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 041882 144 RTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLI 223 (491)
Q Consensus 144 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 223 (491)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++.+.... +...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 355566667777777777777777777776653 224445555666677777777777777777665322 566677777
Q ss_pred HHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCh
Q 041882 224 GFLCRTG-EMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKI 302 (491)
Q Consensus 224 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 302 (491)
..+...| ++++|...|+++.+.... +...+..+...+...|++++|...++...+.. +.+...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 7777777 777777777777665322 45566667777777777777777777776654 33345555566667777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCHHH
Q 041882 303 EEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGG--------CKPNAATYRMMVDGFLRVEDFEG 374 (491)
Q Consensus 303 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~ 374 (491)
++|...++++.+.... +...+..+...+...|++++|...++++.+.. .+....++..+...+...|++++
T Consensus 176 ~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 7777777777665443 56666777777777777777777777665421 12234566666666777777777
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041882 375 SLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDA 436 (491)
Q Consensus 375 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 436 (491)
|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 777777766643 2345566666677777777777777777666532 12445555555544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-16 Score=154.13 Aligned_cols=339 Identities=13% Similarity=0.026 Sum_probs=291.5
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cC
Q 041882 54 IRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLAR----ARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGK----AH 125 (491)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 125 (491)
.++++.|+..|++..+.| +..++..+...+.. .+++++|.+.|+...+.+ ++..+..|...|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 789999999999998864 56788889999998 899999999999998875 66778888888888 88
Q ss_pred CHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHh----CCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCh
Q 041882 126 LVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVD----NDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLK----KGEW 197 (491)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~ 197 (491)
++++|+..|++..+.+ +..++..+...|.. .+++++|++.|++..+.| +...+..+...|.. .+++
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCH
Confidence 9999999999998865 67788889998887 789999999999998864 67788888888888 8999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHhH
Q 041882 198 EEASRVFDEMLEREVPPTVVTYNSLIGFLCR----TGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCF----KGEYNE 269 (491)
Q Consensus 198 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~ 269 (491)
++|.++|++..+.| +...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .++.++
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 99999999998875 66788888888886 889999999999998764 45667777777777 899999
Q ss_pred HHHHHHHHHHcCCCCChhcHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 041882 270 AKKMMFDMAYRGCKPQLVNFGVLMSDLGKR-----GKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKED---RAAEAY 341 (491)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~ 341 (491)
|..+|+...+.+ +...+..+...|... ++.++|...|++..+.+ +...+..+...|...| ++++|.
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 999999998765 455667777888877 89999999999998874 5677888888888766 789999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----CCCHHHHHHH
Q 041882 342 KVLTEMQIGGCKPNAATYRMMVDGFLR----VEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLK----GGKVDDACFV 413 (491)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~ 413 (491)
+.|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .++.++|..+
T Consensus 352 ~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 352 EWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 999999886 467788888888888 899999999999999975 56778888888988 8999999999
Q ss_pred HHHHHHCCC
Q 041882 414 LEEMEKRKM 422 (491)
Q Consensus 414 ~~~~~~~~~ 422 (491)
|++..+.+.
T Consensus 426 ~~~A~~~~~ 434 (490)
T 2xm6_A 426 FDTASTNDM 434 (490)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHCCC
Confidence 999998764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.84 E-value=9.7e-19 Score=163.01 Aligned_cols=279 Identities=10% Similarity=-0.034 Sum_probs=156.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILV 157 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 157 (491)
.+..+...+.+.|++++|...++.+.+.. +.+..++..+...+...|++++|+..|+++...+ +.+..++..+..++.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34455555555555555555555555543 3445555555555555555555555555554443 124455555555555
Q ss_pred hCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 041882 158 DNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKG 237 (491)
Q Consensus 158 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 237 (491)
..|++++|...++++...... +...+..+... .. ... ....+.. +..+...|++++|..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-----------~~~-~~~~~~~-~~~~~~~~~~~~A~~ 202 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-----------GAG-LGPSKRI-LGSLLSDSLFLEVKE 202 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------------------CT-THHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-----------hhc-ccHHHHH-HHHHhhcccHHHHHH
Confidence 555555555555555543211 11111100000 00 000 0000011 222236677777777
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 041882 238 LFEDMIKKGTYP-NAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQ 316 (491)
Q Consensus 238 ~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 316 (491)
.++++.+..... +..++..+...+...|++++|...++.+.... +.+...+..+...+...|++++|...++++.+..
T Consensus 203 ~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 281 (368)
T 1fch_A 203 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281 (368)
T ss_dssp HHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 777776653221 45666667777777777777777777766653 3345666677777777777777777777776654
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041882 317 YKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKP-----------NAATYRMMVDGFLRVEDFEGSLKVLNAM 382 (491)
Q Consensus 317 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~~ 382 (491)
+. +...+..+..+|.+.|++++|...++++.+.. +. ...+|..+..++...|++++|..++++.
T Consensus 282 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 282 PG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 33 56677777777777777777777777765532 11 1567777777777778777777776543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-16 Score=154.83 Aligned_cols=410 Identities=12% Similarity=0.062 Sum_probs=273.4
Q ss_pred CcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH-H
Q 041882 44 PIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHY-G 122 (491)
Q Consensus 44 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~ 122 (491)
|..++. +.+.|+.++|..+|+++.+.. +.+...|...+..+.+.|+++.|.++|+++.... |+...|...+... .
T Consensus 16 w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~ 91 (530)
T 2ooe_A 16 WSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRE 91 (530)
T ss_dssp HHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHH
Confidence 444555 466789999999999988753 6677788888888888899999999999888774 4777777766533 3
Q ss_pred hcCCHHHHHH----HHHHhhh-CCCC-cCHHHHHHHHHHHHh---------CCChhhHHHHHHHHHHCCCCCCHHhHHHH
Q 041882 123 KAHLVDKAIE----VFNRMTS-FDCV-RTLQSFNSLLDILVD---------NDRVDDAKRMFDDADKMGFRPNLISFNVM 187 (491)
Q Consensus 123 ~~~~~~~a~~----~~~~~~~-~~~~-~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 187 (491)
..|+.+.|.+ +|++... .|.. .+...|...+..... .|+++.|..+|++..+.........|...
T Consensus 92 ~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~ 171 (530)
T 2ooe_A 92 TKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDY 171 (530)
T ss_dssp HTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHH
T ss_pred HccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 4567666654 6666543 2332 356778777776654 67888899999888873111112344333
Q ss_pred HHHH-------------HhcCChHHHHHHHHHHH------hCC---CCCC--------hhhHHHHHHHHHhc----CCh-
Q 041882 188 IKGR-------------LKKGEWEEASRVFDEML------ERE---VPPT--------VVTYNSLIGFLCRT----GEM- 232 (491)
Q Consensus 188 l~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~ll~~~~~~----~~~- 232 (491)
.... .+.++++.|..++..+. +.. ++|+ ...|...+...... ++.
T Consensus 172 ~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~ 251 (530)
T 2ooe_A 172 NKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQT 251 (530)
T ss_dssp HHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSH
T ss_pred HHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcch
Confidence 3211 12345667777666532 221 2333 23455544433222 232
Q ss_pred ---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCHh-------HHHHHHHHHHHcCCCCChhcHHHHHHH
Q 041882 233 ---GKAKGLFEDMIKKGTYPNAVTYALLMEGLCF-------KGEYN-------EAKKMMFDMAYRGCKPQLVNFGVLMSD 295 (491)
Q Consensus 233 ---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll~~ 295 (491)
..+..+|++.+... +-+...|..+...+.. .|+++ +|..++++..+.-.+.+...+..++..
T Consensus 252 ~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~ 330 (530)
T 2ooe_A 252 LITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 330 (530)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 36778888888763 3367778777777765 68876 888888888763224457778888888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHH
Q 041882 296 LGKRGKIEEAKSLLSEMKKRQYKPDV-VTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDG-FLRVEDFE 373 (491)
Q Consensus 296 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~ 373 (491)
+.+.|++++|..+|+++.+..+. +. ..|..++..+.+.|++++|.++|++..+.. +.+...+...... +...|+++
T Consensus 331 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 331 EESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHH
T ss_pred HHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChh
Confidence 88889999999999998886332 33 578888888888889999999999888642 2233333332222 33578899
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCCcchhHHHH
Q 041882 374 GSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRK-MRFD--LKAWEGLVTDACIGDGNAGGLVEIR 450 (491)
Q Consensus 374 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~~~~~~~~~~~~ 450 (491)
+|..+|++.++.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+.....
T Consensus 409 ~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 409 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 487 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999888753 2357788888888888999999999999988763 2332 4578887876566676666655555
Q ss_pred HHhhhhhhhhhhH
Q 041882 451 DMRDYSMAISSVM 463 (491)
Q Consensus 451 ~m~~~~~~~~~~~ 463 (491)
++.+.- |++..
T Consensus 488 r~~~~~--p~~~~ 498 (530)
T 2ooe_A 488 RRFTAF--REEYE 498 (530)
T ss_dssp HHHHHT--HHHHT
T ss_pred HHHHHC--chhcc
Confidence 555443 65543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-18 Score=160.91 Aligned_cols=266 Identities=11% Similarity=-0.005 Sum_probs=184.6
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 041882 148 SFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLC 227 (491)
Q Consensus 148 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 227 (491)
.+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|.+.|+.+.+... .+..++..+..++.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34445555555555555555555555442 22344445555555555555555555555544432 24445555555555
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHH---------------HHHHHHHhcCCHhHHHHHHHHHHHcCCCC-ChhcHHH
Q 041882 228 RTGEMGKAKGLFEDMIKKGTYPNAVTYA---------------LLMEGLCFKGEYNEAKKMMFDMAYRGCKP-QLVNFGV 291 (491)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ 291 (491)
..|++++|...++++...... +...+. ..+..+...|++++|...++.+.+..... +..++..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 555555555555555543221 111111 12333448899999999999999874221 5778889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 041882 292 LMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVED 371 (491)
Q Consensus 292 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 371 (491)
+...+...|++++|...++++.+..+. +..+|..+...+...|++++|...++++.+.. +.+..++..+..++...|+
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC
Confidence 999999999999999999999887544 78899999999999999999999999998764 5567889999999999999
Q ss_pred HHHHHHHHHHHHhCCCC----------CCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 372 FEGSLKVLNAMLTSRHC----------PRLETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 372 ~~~a~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
+++|...|+++.+.... ....+|..+..+|...|++++|..++++..
T Consensus 301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 99999999999874211 126789999999999999999999887544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.3e-16 Score=152.45 Aligned_cols=415 Identities=10% Similarity=0.019 Sum_probs=302.0
Q ss_pred HHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 041882 64 FHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCV 143 (491)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 143 (491)
|+..++.. +-+...|..++.. .+.|+++.|..+|+.+.+.. |.+...|..++..+.+.|++++|..+|++.....
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 44444433 5678899999984 78999999999999999875 7788999999999999999999999999998864
Q ss_pred cCHHHHHHHHHHH-HhCCChhhHHH----HHHHHHHC-CCCC-CHHhHHHHHHHHHh---------cCChHHHHHHHHHH
Q 041882 144 RTLQSFNSLLDIL-VDNDRVDDAKR----MFDDADKM-GFRP-NLISFNVMIKGRLK---------KGEWEEASRVFDEM 207 (491)
Q Consensus 144 ~~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~p-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~ 207 (491)
|+...|..++... ...|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|.++|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6888888887543 45677777765 77766543 5444 45677777776654 68899999999999
Q ss_pred HhCCCCCChhhHHHHHHHH-------------HhcCChhHHHHHHHHHH------HcC---CCCC--------HHHHHHH
Q 041882 208 LEREVPPTVVTYNSLIGFL-------------CRTGEMGKAKGLFEDMI------KKG---TYPN--------AVTYALL 257 (491)
Q Consensus 208 ~~~~~~~~~~~~~~ll~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l 257 (491)
.+.........|....... ...+++..|..+++.+. +.. ++|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8831111123444332211 13467888888887632 221 2343 2456555
Q ss_pred HHHHHhc----CCH----hHHHHHHHHHHHcCCCCChhcHHHHHHHHHh-------cCChH-------HHHHHHHHHHHc
Q 041882 258 MEGLCFK----GEY----NEAKKMMFDMAYRGCKPQLVNFGVLMSDLGK-------RGKIE-------EAKSLLSEMKKR 315 (491)
Q Consensus 258 l~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~ 315 (491)
+...... ++. ..+..+|++.+... +.+...|......+.+ .|+++ +|..+|++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 5433322 232 37788899888763 4567778878777775 68987 999999999873
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHh
Q 041882 316 QYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPN-A-ATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLET 393 (491)
Q Consensus 316 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 393 (491)
-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|...+..+.+.|++++|..+|++..+.. +.+...
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~ 392 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHV 392 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHH
Confidence 12236889999999999999999999999999985 454 3 578888888889999999999999999863 223333
Q ss_pred HHHHHHH-HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhh-hhhh-hhHHHHHHHH
Q 041882 394 FSCLLVG-LLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYS-MAIS-SVMNVVDLLW 470 (491)
Q Consensus 394 ~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~-~~~~-~~~~~~~l~~ 470 (491)
|...+.. +...|++++|..+|++..+.. .-+...|..++..+...|+.+++...+++..... ..|+ ....+..++.
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 471 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 4333322 336899999999999998752 2368899999998888899888988888877653 2343 2335666677
Q ss_pred HhcCCCcchhhhhHhhhh
Q 041882 471 TYLGMGTCVVIDLFQKRE 488 (491)
Q Consensus 471 ~~~~~g~~~~~~~~~k~~ 488 (491)
.....|+...+..+.+|.
T Consensus 472 ~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 472 FESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHSSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 777889988888776654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=161.96 Aligned_cols=268 Identities=10% Similarity=-0.039 Sum_probs=168.8
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 041882 145 TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIG 224 (491)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 224 (491)
+...+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...|+++.+... .+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 34456667777777777777777777776653 23566677777777777777777777777766532 25667777777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-CChhcHHHHHH
Q 041882 225 FLCRTGEMGKAKGLFEDMIKKGTY---------PNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCK-PQLVNFGVLMS 294 (491)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~ 294 (491)
+|...|++++|...++++.+.... .....+..+...+...|++++|...++++.+.... .+..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 777777777777777777654211 01122333456667777777777777777765311 14566667777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 041882 295 DLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEG 374 (491)
Q Consensus 295 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 374 (491)
.+...|++++|...|+++.+..+. +..+|..+..+|...|++++|...++++.+.. +.+..++..+..+|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 777777777777777777665443 56677777777777777777777777776643 3346667777777777777777
Q ss_pred HHHHHHHHHhCCCC-----------CCHHhHHHHHHHHHcCCCHHHHHHHHHH
Q 041882 375 SLKVLNAMLTSRHC-----------PRLETFSCLLVGLLKGGKVDDACFVLEE 416 (491)
Q Consensus 375 a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 416 (491)
|...|+++.+.... .+..+|..+..++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 77777777653100 0245667777777777777766665543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=162.08 Aligned_cols=266 Identities=10% Similarity=-0.053 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 041882 112 TLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGR 191 (491)
Q Consensus 112 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 191 (491)
..+..+...+.+.|++++|+..|+++..... .+..+|..+..++...|++++|+..|+++.+.. +.+..++..+..++
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3355556666666666666666666655432 255666666666666666666666666665543 22355666666666
Q ss_pred HhcCChHHHHHHHHHHHhCCCC---------CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 041882 192 LKKGEWEEASRVFDEMLEREVP---------PTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTY-PNAVTYALLMEGL 261 (491)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~ 261 (491)
...|++++|.+.|+++.+.... .....+..+...+...|++++|...++++.+.... .+..++..+...+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 6666666666666666553211 01223344567777888888888888888776332 1577778888888
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041882 262 CFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAY 341 (491)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 341 (491)
...|++++|...+++..+.. +.+..++..+..++...|++++|...|+++.+..+. +..++..+..+|...|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHH
Confidence 88888888888888887764 445677888888888888888888888888776444 5778888888888888888888
Q ss_pred HHHHHHHhCCC---C--------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041882 342 KVLTEMQIGGC---K--------PNAATYRMMVDGFLRVEDFEGSLKVLNA 381 (491)
Q Consensus 342 ~~~~~~~~~~~---~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~ 381 (491)
..|+++.+..- . .+...|..+..++...|+.+.+..+.++
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 88888765310 0 1256788888888888998888776654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-17 Score=151.51 Aligned_cols=154 Identities=12% Similarity=0.037 Sum_probs=95.0
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 261 LCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEA 340 (491)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 340 (491)
+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHH
Confidence 445566666666666666553 334555666666666666666666666666655333 556666666666677777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHhHHHHHHHHHcCCCHHH
Q 041882 341 YKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCP-----------RLETFSCLLVGLLKGGKVDD 409 (491)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~ 409 (491)
...++++.+.. +.+..++..+...+...|++++|...++++.+..... +...+..+..++.+.|++++
T Consensus 226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 77776665542 3345566666666677777777777776666542110 35566666677777777777
Q ss_pred HHHHHHHH
Q 041882 410 ACFVLEEM 417 (491)
Q Consensus 410 a~~~~~~~ 417 (491)
|..++++.
T Consensus 305 A~~~~~~~ 312 (327)
T 3cv0_A 305 VELTYAQN 312 (327)
T ss_dssp HHHHTTCC
T ss_pred HHHHHHHH
Confidence 77666543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.6e-17 Score=148.84 Aligned_cols=229 Identities=10% Similarity=-0.037 Sum_probs=101.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhC
Q 041882 80 ASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDN 159 (491)
Q Consensus 80 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 159 (491)
..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...|+++.... +.+..++..+...+...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 333444444444444444444444433 2334444444444444455555555444444432 12344444444555555
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHhHHHH--------------HH-HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 041882 160 DRVDDAKRMFDDADKMGFRPNLISFNVM--------------IK-GRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIG 224 (491)
Q Consensus 160 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 224 (491)
|++++|.+.++++.+.... +...+..+ .. .+...|++++|.+.++++.+.... +...+..+..
T Consensus 103 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 180 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGV 180 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 5555555555544443211 11111111 11 134445555555555555543222 4445555555
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHH
Q 041882 225 FLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEE 304 (491)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 304 (491)
.+...|++++|...++++.+... .+..++..+...+...|++++|...++...+.. +.+...+..+..++...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHH
Confidence 55555555555555555554321 134444444455555555555555555444432 2233344444444444444444
Q ss_pred HHHHHHHHHH
Q 041882 305 AKSLLSEMKK 314 (491)
Q Consensus 305 a~~~~~~~~~ 314 (491)
|...++++.+
T Consensus 259 A~~~~~~a~~ 268 (327)
T 3cv0_A 259 AAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.4e-16 Score=149.59 Aligned_cols=380 Identities=9% Similarity=-0.088 Sum_probs=201.7
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----
Q 041882 73 KHSYPSYASLIYKLARARDFDAVETVLGYIQDF--------NIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSF---- 140 (491)
Q Consensus 73 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 140 (491)
......|+.+...+...|++++|++.|+...+. .-+....+|..+..+|...|++++|+..+++....
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334556788888888888888888888776542 11223466777888888888888888887776432
Q ss_pred -C--CCcCHHHHHHHHHHHHh--CCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHH---HHhcCChHHHHHHHHHHHhCC
Q 041882 141 -D--CVRTLQSFNSLLDILVD--NDRVDDAKRMFDDADKMGFRPN-LISFNVMIKG---RLKKGEWEEASRVFDEMLERE 211 (491)
Q Consensus 141 -~--~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~ 211 (491)
+ ......++..+..++.. .+++++|+..|++..+.. |+ ...+..+..+ +...++.++|++.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 0 01134555555544444 345777888887777653 33 3333333333 334566677777777776653
Q ss_pred CCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChh
Q 041882 212 VPPTVVTYNSLIGFLCR----TGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLV 287 (491)
Q Consensus 212 ~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 287 (491)
.. +...+..+...+.. .|++++|.+.+++...... .+..++..+...|...|++++|...+++..+.. +.+..
T Consensus 206 p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 282 (472)
T 4g1t_A 206 PD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAY 282 (472)
T ss_dssp SS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred Cc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHH
Confidence 22 45555555544443 3556677777777766533 256667777777777777777777777777653 33344
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041882 288 NFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFL 367 (491)
Q Consensus 288 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 367 (491)
++..+..+|...+.. ..... ...........+.++.|...+++..+.. +.+..++..+...+.
T Consensus 283 ~~~~lg~~y~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHH
Confidence 455554444321100 00000 0000000111123455666666665532 333445566666777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH--HhHHHHHH-HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcc
Q 041882 368 RVEDFEGSLKVLNAMLTSRHCPRL--ETFSCLLV-GLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAG 444 (491)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 444 (491)
..|++++|...|++.++....+.. ..+..+.. .+...|++++|+..|++..+. .|+...+...+..+
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~~~~l-------- 415 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMKDKL-------- 415 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHHHHHH--------
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHH--------
Confidence 777777777777777664322211 11222222 233567777777777776653 34433333222211
Q ss_pred hhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhhhhHhhh
Q 041882 445 GLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVIDLFQKR 487 (491)
Q Consensus 445 ~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~k~ 487 (491)
.+.+++.. ...|++...+..+|++|..+|++.++..+-++
T Consensus 416 -~~~~~~~l--~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~k 455 (472)
T 4g1t_A 416 -QKIAKMRL--SKNGADSEALHVLAFLQELNEKMQQADEDSER 455 (472)
T ss_dssp -HHHHHHHH--HHCC-CTTHHHHHHHHHHHHHHCC--------
T ss_pred -HHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11122211 22366777777777777777777766666544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-16 Score=142.86 Aligned_cols=250 Identities=12% Similarity=0.017 Sum_probs=135.0
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 041882 122 GKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEAS 201 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 201 (491)
...|+++.|+..++++..............+.++|...|+++.|+..++. .-.|+..++..+...+...++.++|+
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 34556666666555554432111123444455566666666665554432 12344455555555566666666666
Q ss_pred HHHHHHHhCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 041882 202 RVFDEMLEREVPP-TVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 202 ~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (491)
+.++++...+..| +...+..+..++...|++++|++.+++ +.+...+..+...+.+.|++++|...++.+.+.
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 6666655544322 344445555556666666666666655 234555555666666666666666666666555
Q ss_pred CCCCChhcH---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 041882 281 GCKPQLVNF---GVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAA 357 (491)
Q Consensus 281 ~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 357 (491)
. |+.... ...+..+...|++++|..+|+++.+..+ .+...++.+..++.+.|++++|...+++..+.. +-+..
T Consensus 160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~ 235 (291)
T 3mkr_A 160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPE 235 (291)
T ss_dssp C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 2 332111 1122223334566666666666666533 256666666666666666666666666665543 34555
Q ss_pred HHHHHHHHHHhcCCHHH-HHHHHHHHHhC
Q 041882 358 TYRMMVDGFLRVEDFEG-SLKVLNAMLTS 385 (491)
Q Consensus 358 ~~~~li~~~~~~~~~~~-a~~~~~~~~~~ 385 (491)
++..++..+...|+.++ +.++++++.+.
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 66666666666666644 45666666653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=7.7e-18 Score=153.94 Aligned_cols=283 Identities=12% Similarity=0.107 Sum_probs=119.6
Q ss_pred hhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041882 52 KEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAI 131 (491)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 131 (491)
.+.|+.++|.++++++ +++.+|..++.++.+.|++++|.+.|.+. +|...|..++..+...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 3567788888888876 22348888888888888888888888542 46667888888888888888888
Q ss_pred HHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041882 132 EVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLERE 211 (491)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 211 (491)
.+++...+. .+++.+.+.++.+|.+.|++.++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 877766553 3456778888888888888888887774 366778888888888888888888888865
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHH
Q 041882 212 VPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGV 291 (491)
Q Consensus 212 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (491)
..|..++.++.+.|++++|++.++++ .++.+|..++.+|...|+++.|...... +...+.....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHH
Confidence 47888888888888888888888887 2678888888888888888888554443 2223333456
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCC------CHHHHHHHHH
Q 041882 292 LMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQI-GGCKP------NAATYRMMVD 364 (491)
Q Consensus 292 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~li~ 364 (491)
++..|.+.|.+++|..+++...... .-....|+.+.-.|++- ++++..+.++.... .+++| +...|..++-
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888887665 33667777777777653 33333333332211 12233 3445677777
Q ss_pred HHHhcCCHHHHHH
Q 041882 365 GFLRVEDFEGSLK 377 (491)
Q Consensus 365 ~~~~~~~~~~a~~ 377 (491)
.|...++++.|..
T Consensus 291 ly~~~~e~d~A~~ 303 (449)
T 1b89_A 291 LYDKYEEYDNAII 303 (449)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHhhchHHHHHH
Confidence 7777888887765
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-16 Score=140.60 Aligned_cols=251 Identities=12% Similarity=0.084 Sum_probs=105.7
Q ss_pred HhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 041882 50 DLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDK 129 (491)
Q Consensus 50 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 129 (491)
.....|++..|+..++................+.+++...|+++.|...++. . -+|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHH
Confidence 3344455555555554433221111112333344455555555555443322 1 13334444444445555555555
Q ss_pred HHHHHHHhhhCCCCc-CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 041882 130 AIEVFNRMTSFDCVR-TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEML 208 (491)
Q Consensus 130 a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 208 (491)
|++.++++...+..| +...+..+..++...|++++|++.+++ +.+...+..+...+.+.|++++|.+.|+.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555544332212 333444444445555555555555443 2234444444444555555555555555544
Q ss_pred hCCCCCChhhH---HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 041882 209 EREVPPTVVTY---NSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQ 285 (491)
Q Consensus 209 ~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 285 (491)
+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++..+.. +.+
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~ 233 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGH 233 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 432 221100 11112222234444444444444443 22244444444444444444444444444444432 223
Q ss_pred hhcHHHHHHHHHhcCChHH-HHHHHHHHHH
Q 041882 286 LVNFGVLMSDLGKRGKIEE-AKSLLSEMKK 314 (491)
Q Consensus 286 ~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~ 314 (491)
..++..++..+...|+.++ +.++++++.+
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3344444444444444432 3344444444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-17 Score=152.45 Aligned_cols=283 Identities=12% Similarity=0.067 Sum_probs=137.2
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHH
Q 041882 88 RARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKR 167 (491)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 167 (491)
+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 6678999999998882 2358999999999999999999999653 577799999999999999999999
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041882 168 MFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGT 247 (491)
Q Consensus 168 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 247 (491)
+++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88877664 4567788999999999999999998884 267789999999999999999999999977
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 041882 248 YPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNIL 327 (491)
Q Consensus 248 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 327 (491)
..|..++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+ ..++.....+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence 36889999999999999999999987 36789999999999999999996655542 2355556678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC------CHHhHHHHHHH
Q 041882 328 INYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS-RHCP------RLETFSCLLVG 400 (491)
Q Consensus 328 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~ 400 (491)
+..|.+.|++++|..+++...... +-....|+.+..++++- ++++..+.++..... +++| +...|..+.-.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988655 55677888887777764 455555555544333 3333 45678899999
Q ss_pred HHcCCCHHHHHHH
Q 041882 401 LLKGGKVDDACFV 413 (491)
Q Consensus 401 ~~~~g~~~~a~~~ 413 (491)
|...++++.|...
T Consensus 292 y~~~~e~d~A~~t 304 (449)
T 1b89_A 292 YDKYEEYDNAIIT 304 (449)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHhhchHHHHHHH
Confidence 9999999988763
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.4e-15 Score=143.21 Aligned_cols=377 Identities=11% Similarity=-0.026 Sum_probs=215.7
Q ss_pred hHHHhhhcCChHHHHHHHHHhhhC--------CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC-------CCCCH
Q 041882 47 FVNDLKEIRDPDEALSLFHRHHQM--------GSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFN-------IRCKE 111 (491)
Q Consensus 47 ~~~~l~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~ 111 (491)
+...+...|+.++|++.|++..+. ..+....+|..+...+...|++++|...++...+.. .....
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~ 136 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence 445566789999999999987542 123346689999999999999999999998876531 12235
Q ss_pred HHHHHHHHHHHhc--CCHHHHHHHHHHhhhCCCCcCHHHHHHHHHH---HHhCCChhhHHHHHHHHHHCCCCCCHHhHHH
Q 041882 112 TLFISLIQHYGKA--HLVDKAIEVFNRMTSFDCVRTLQSFNSLLDI---LVDNDRVDDAKRMFDDADKMGFRPNLISFNV 186 (491)
Q Consensus 112 ~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 186 (491)
.++..+..++... +++++|++.|++..+.++. +...+..+..+ +...++.++|++.+++..+.. +.+...+..
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~ 214 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVL 214 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHH
Confidence 6777666666554 5799999999999886533 56666666555 345678899999999988764 224555655
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 041882 187 MIKGRLK----KGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLC 262 (491)
Q Consensus 187 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 262 (491)
+...+.. .+++++|.+++++...... .+..++..+...|...|++++|...+++..+.... +..++..+..+|.
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHH
Confidence 5555544 4678899999999887653 37788999999999999999999999999987433 5667777766664
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041882 263 FKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYK 342 (491)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 342 (491)
..+... .... ... ........+..+.|...++...+.++. +...+..+...|...|++++|..
T Consensus 293 ~~~~~~---------~~~~-~~~------~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~ 355 (472)
T 4g1t_A 293 AKVFQV---------MNLR-ENG------MYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEY 355 (472)
T ss_dssp HHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHh---------hhHH-HHH------HHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHH
Confidence 321110 0000 000 000011112234555555555554332 34445555566666666666666
Q ss_pred HHHHHHhCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 343 VLTEMQIGGCKPNAA--TYRMMVD-GFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 343 ~~~~~~~~~~~~~~~--~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
.|++..+....+... .+..+.. .....|++++|+..|++.++. .|+...... ....+.++++...+
T Consensus 356 ~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~ 424 (472)
T 4g1t_A 356 YFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLS 424 (472)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHH
Confidence 666655532211111 1111111 123455666666666666553 233221111 11223333444333
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhh
Q 041882 420 RKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYS 456 (491)
Q Consensus 420 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~ 456 (491)
.. +.+..+|..+...+...|+.++|++.+++..+.+
T Consensus 425 ~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 425 KN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 21 2234455555555555566666666665555443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-14 Score=147.76 Aligned_cols=378 Identities=12% Similarity=0.101 Sum_probs=276.1
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCC--CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGS--KHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYG 122 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (491)
.-.++.+...|.+.+|++++++....+. ..+...-+.++....+. +..+..+..+...... ...+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHHHHHH
Confidence 3467788899999999999999884321 23455666677776666 6677777666665221 333677888
Q ss_pred hcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHH
Q 041882 123 KAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASR 202 (491)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 202 (491)
..|.+++|..+|++... ...+.+.++. ..+++++|.++.++.. +..+|..+..++...|++++|.+
T Consensus 1061 ~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHH
Confidence 89999999999998631 3333344433 5688999999988652 46788899999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 041882 203 VFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGC 282 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 282 (491)
.|.+. -|...|..++.++.+.|++++|.++|....+.. +++...+.++.+|++.+++++...+. .
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~--- 1191 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N--- 1191 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---
Confidence 99664 377888899999999999999999999887764 23333445888899998888654443 1
Q ss_pred CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 041882 283 KPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMM 362 (491)
Q Consensus 283 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 362 (491)
.++...+..+...|...|++++|..+|..+ ..|..++.+|.+.|++++|.+.+++. .+..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence 345566777889999999999999999985 36889999999999999999999875 456888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--C
Q 041882 363 VDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIG--D 440 (491)
Q Consensus 363 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~ 440 (491)
-.+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|.-+...+++. +
T Consensus 1257 ~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHH
Confidence 88999999998888876542 3456677788999999999999999998887442 22334454444433333 2
Q ss_pred CCcchhHHHHHHhhhhhhh-----hhhHHHHHHHHHhcCCCcchhhh
Q 041882 441 GNAGGLVEIRDMRDYSMAI-----SSVMNVVDLLWTYLGMGTCVVID 482 (491)
Q Consensus 441 ~~~~~~~~~~~m~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~~~ 482 (491)
+..+.++.+.. +.+++| +...-+..+...|.+.|.|..|.
T Consensus 1331 klmEhlk~f~~--rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1331 KMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHH--hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 33344444432 233333 56667788888888888887654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=164.89 Aligned_cols=151 Identities=15% Similarity=0.168 Sum_probs=117.8
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHH---CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH
Q 041882 145 TLQSFNSLLDILVDNDRVDDAKRMFDDADK---MGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNS 221 (491)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 221 (491)
-..+||+||.+|++.|++++|.++|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456899999999999999999999988764 47889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC------hhcHHHHHH
Q 041882 222 LIGFLCRTGEM-GKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQ------LVNFGVLMS 294 (491)
Q Consensus 222 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~ 294 (491)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+. .+++.++++ ..+..|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999998874 78889999999999999999999887654443 333333333 2233333 444555666
Q ss_pred HHHhcC
Q 041882 295 DLGKRG 300 (491)
Q Consensus 295 ~~~~~~ 300 (491)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-17 Score=161.46 Aligned_cols=169 Identities=13% Similarity=0.056 Sum_probs=129.5
Q ss_pred CCChhcHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 041882 283 KPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKK---RQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATY 359 (491)
Q Consensus 283 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 359 (491)
..-..+|+++|++|++.|++++|.++|++|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33467899999999999999999999988764 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC------HHHHHHH
Q 041882 360 RMMVDGFLRVED-FEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFD------LKAWEGL 432 (491)
Q Consensus 360 ~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l 432 (491)
+++|.++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.+. .+++..+++ +.++.|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 999999999987 478899999999999999999999988665554 333444444 3345554 3344444
Q ss_pred HHHHHhcCC------CcchhHHHHHHhhhhh
Q 041882 433 VTDACIGDG------NAGGLVEIRDMRDYSM 457 (491)
Q Consensus 433 l~~~~~~~~------~~~~~~~~~~m~~~~~ 457 (491)
.. ++.... ..--+++++.+.+..+
T Consensus 279 ~d-l~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 279 RD-VYAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp HH-HHCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HH-HHccCCCCcCccccCCHHHHHHHHHHHH
Confidence 44 444332 1223455666665544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-12 Score=133.75 Aligned_cols=343 Identities=13% Similarity=0.119 Sum_probs=229.3
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHH
Q 041882 74 HSYPSYASLIYKLARARDFDAVETVLGYIQDFNI--RCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNS 151 (491)
Q Consensus 74 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 151 (491)
.++.-.....++|...|.+.++.++++.+.-.+. ..+...-+.++.+..+. +..+..++..++... + ...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHH
Confidence 3444455666677777777777777777763321 13345555566555555 445555555554421 1 233
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 041882 152 LLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGE 231 (491)
Q Consensus 152 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 231 (491)
+...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++. -+..+|..+..++...|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 6667777788888888887742 11222233322 667788888777754 156778888888888888
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHH
Q 041882 232 MGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSE 311 (491)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 311 (491)
+++|++.|.+. -|...|..++.++.+.|++++|.+++....+.. ++....+.++.+|++.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 88888888664 267777788888888888888888888776653 33334445778888888777544442
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 041882 312 MKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRL 391 (491)
Q Consensus 312 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 391 (491)
. .++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .+.
T Consensus 1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~ 1250 (1630)
T 1xi4_A 1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NST 1250 (1630)
T ss_pred --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCH
Confidence 2 235566667888888888888888888874 36778888888888888888888776 345
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHH
Q 041882 392 ETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWT 471 (491)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~ 471 (491)
.+|..+..+|...|++..|...... +..++..+..++..|-+.|.+++++..++... ++++........++..
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL--~LeraH~gmftELaiL 1323 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAIL 1323 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccChhHhHHHHHHHHH
Confidence 7788888888888888888776553 23356667788888888888888888886443 4446555555555555
Q ss_pred hcCC
Q 041882 472 YLGM 475 (491)
Q Consensus 472 ~~~~ 475 (491)
|.+-
T Consensus 1324 yaKy 1327 (1630)
T 1xi4_A 1324 YSKF 1327 (1630)
T ss_pred HHhC
Confidence 4443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-14 Score=127.38 Aligned_cols=225 Identities=12% Similarity=0.059 Sum_probs=148.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CC----HHHHH
Q 041882 182 ISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTY--PN----AVTYA 255 (491)
Q Consensus 182 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 255 (491)
..+..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|...+++..+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344555555566666666666666655554 35556666666666666666666666665543111 11 35566
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 041882 256 LLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKED 335 (491)
Q Consensus 256 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 335 (491)
.+...+...|++++|...++...... |+. ..+...|++++|...++.+....+. +...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhc
Confidence 66666666666666666666666542 331 3355566777777777777765332 4566777777788888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHH
Q 041882 336 RAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLE 415 (491)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 415 (491)
++++|...++++.+.. +.+..++..+...+...|++++|...++++++.. +.+...+..+..++...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888888888877653 4456777777888888888888888888887753 2346777778888888888888888888
Q ss_pred HHHHC
Q 041882 416 EMEKR 420 (491)
Q Consensus 416 ~~~~~ 420 (491)
+..+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87754
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.1e-15 Score=128.57 Aligned_cols=223 Identities=11% Similarity=-0.029 Sum_probs=114.0
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc--C----HHHHH
Q 041882 77 PSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVR--T----LQSFN 150 (491)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~ 150 (491)
..+..+...+...|++++|.+.++.+.+.. .+...+..+...+...|++++|+..+++........ + ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555666666666666666666666555 455666666666666666666666666654432110 1 35555
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 041882 151 SLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTG 230 (491)
Q Consensus 151 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 230 (491)
.+..++...|++++|...|+++.+. .|+. ..+...|++++|...++.+..... .+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhc
Confidence 5666666666666666666665553 2332 223344455555555555554321 13344445555555555
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHH
Q 041882 231 EMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLS 310 (491)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 310 (491)
++++|...++++.+.... +..++..+..++...|++++|...++...+.. +.+...+..+..++...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 555555555555543221 34444444455555555555555555444432 2223344444444444444444444444
Q ss_pred HHH
Q 041882 311 EMK 313 (491)
Q Consensus 311 ~~~ 313 (491)
...
T Consensus 232 ~a~ 234 (258)
T 3uq3_A 232 AAR 234 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.2e-15 Score=125.15 Aligned_cols=198 Identities=16% Similarity=0.044 Sum_probs=114.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHH
Q 041882 215 TVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMS 294 (491)
Q Consensus 215 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 294 (491)
+...+..+...+.+.|++++|+..|++.++.... +...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4444555555555555555555555555544222 44455555555555555555555555555443 223444445555
Q ss_pred HHHhc-----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041882 295 DLGKR-----------GKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMV 363 (491)
Q Consensus 295 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 363 (491)
++... |++++|...+++..+..+. +...+..+..++...|++++|+..|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 55555 7777777777777776544 56677777777777788888888887777665 5667777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 364 DGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
.++...|++++|...|+++++.. +.+...+..+..++...|++++|...+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 77777788888888887777753 2356667777777777888888777776654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.3e-15 Score=124.82 Aligned_cols=197 Identities=17% Similarity=0.092 Sum_probs=94.0
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHH
Q 041882 74 HSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLL 153 (491)
Q Consensus 74 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 153 (491)
++...+..+...+.+.|++++|...++...+.. |.+...+..+...+.+.|++++|+..|++..+.++ .+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 344455555566666666666666666665554 44555666666666666666666666666555442 2455555555
Q ss_pred HHHHhC-----------CChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 041882 154 DILVDN-----------DRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSL 222 (491)
Q Consensus 154 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 222 (491)
.++... |++++|+..|++..+... -+...+..+..++...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 555555 555555555554444321 123344444444445555555555555544443 244444444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 041882 223 IGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFD 276 (491)
Q Consensus 223 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 276 (491)
..++...|++++|+..|++..+.... +...+..+...+...|++++|...++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44555555555555555554443221 334444444444444554444444443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.66 E-value=5e-14 Score=134.33 Aligned_cols=349 Identities=11% Similarity=0.019 Sum_probs=238.8
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDF---DAVETVLGYIQDFNIRCKETLFISLIQHY 121 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (491)
..+...+.+.|++++|+++|++..+.| +..++..+...+...|+. ++|.+.|+...+. ++..+..+...+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 446677788999999999999998766 334555666666777777 8999999988754 556666777755
Q ss_pred HhcC-----CHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCCh---hhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 041882 122 GKAH-----LVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRV---DDAKRMFDDADKMGFRPNLISFNVMIKGRLK 193 (491)
Q Consensus 122 ~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 193 (491)
...+ ++++|+..|++....|. ..++..|...|...+.. .++.+.+......| +......+...|..
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRT 153 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHH
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 5554 78999999999988763 33777788888776553 34555666555544 34556667778888
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CC
Q 041882 194 KGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTG---EMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFK----GE 266 (491)
Q Consensus 194 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~ 266 (491)
.+.++.+......+...-...+...+..+...|...| ++++|++.|++..+.|.. +...+..+...|... ++
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCC
T ss_pred CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCC
Confidence 8866555544333332222224558889999999999 999999999999988754 555556677777554 79
Q ss_pred HhHHHHHHHHHHHcCCCCChhcHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----CHH
Q 041882 267 YNEAKKMMFDMAYRGCKPQLVNFGVLMSD-L--GKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKED-----RAA 338 (491)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~ 338 (491)
+++|..+|+... . -+...+..+... + ...+++++|...|++..+.| +...+..+...|. .| +++
T Consensus 233 ~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 999999999987 3 344556666665 3 46899999999999999875 7778888888887 55 999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----CCCHHHH
Q 041882 339 EAYKVLTEMQIGGCKPNAATYRMMVDGFLR----VEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLK----GGKVDDA 410 (491)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 410 (491)
+|...|++.. +-+......+...|.. ..++++|...|++..+.|. ......|...|.. ..+.++|
T Consensus 305 ~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 305 AAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHH
Confidence 9999999877 3466677777777766 3499999999999999763 3445566666664 4689999
Q ss_pred HHHHHHHHHCCC
Q 041882 411 CFVLEEMEKRKM 422 (491)
Q Consensus 411 ~~~~~~~~~~~~ 422 (491)
..+|+...+.|.
T Consensus 378 ~~~~~~A~~~g~ 389 (452)
T 3e4b_A 378 YVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHCCC
Confidence 999999998874
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-13 Score=127.54 Aligned_cols=248 Identities=12% Similarity=0.059 Sum_probs=177.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhhCCCCcCHHHHHHHHH
Q 041882 76 YPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHL-VDKAIEVFNRMTSFDCVRTLQSFNSLLD 154 (491)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 154 (491)
...|..+...+...|++++|.+.++.+.+.+ +.+..+|..+...+...|+ +++|+..|++....+.. +..+|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 4567777778888888888888888888876 6677888888888888886 88888888888876633 7788888888
Q ss_pred HHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCChh
Q 041882 155 ILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCR-TGEMG 233 (491)
Q Consensus 155 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~ 233 (491)
++...|++++|+..|+++++... -+...|..+..++...|++++|+..|+++++.... +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 88888888888888888887642 26677888888888888888888888888876544 67788888888888 55546
Q ss_pred HH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC------
Q 041882 234 KA-----KGLFEDMIKKGTYPNAVTYALLMEGLCFKG--EYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRG------ 300 (491)
Q Consensus 234 ~a-----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------ 300 (491)
+| +..|++.+..... +...|..+...+...| ++++|.+.+..+ +. .+.+...+..+..+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 4777777765333 5667777777777766 567777777666 22 2344556666666666653
Q ss_pred ---ChHHHHHHHHHH-HHcCCCCCHHHHHHHHHHH
Q 041882 301 ---KIEEAKSLLSEM-KKRQYKPDVVTYNILINYL 331 (491)
Q Consensus 301 ---~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~ 331 (491)
..++|..+|+++ .+.++. ....|..+...+
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l 363 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTI-RKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 246677777776 443222 334454444443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-14 Score=124.87 Aligned_cols=193 Identities=9% Similarity=-0.000 Sum_probs=95.5
Q ss_pred HHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 041882 49 NDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVD 128 (491)
Q Consensus 49 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 128 (491)
..+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|+++
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 122 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYE 122 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHH
Confidence 33444555555555555555432 3344455555555555555555555555555443 334455555555555555555
Q ss_pred HHHHHHHHhhhCCCCc-CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 129 KAIEVFNRMTSFDCVR-TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEM 207 (491)
Q Consensus 129 ~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 207 (491)
+|++.|+++...+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+
T Consensus 123 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 123 EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLF 201 (252)
T ss_dssp HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555554411112 33444555555555555555555555554432 113444444555555555555555555554
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041882 208 LEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK 245 (491)
Q Consensus 208 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 245 (491)
.+... .+...+..+...+...|++++|.+.++.+.+.
T Consensus 202 ~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 202 AQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44322 23444444445555555555555555555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-13 Score=122.19 Aligned_cols=233 Identities=11% Similarity=0.001 Sum_probs=139.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 041882 184 FNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYP--NAVTYALLMEGL 261 (491)
Q Consensus 184 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~ 261 (491)
+......+...|++++|+..|+.+.+.... +...+..+..++...|++++|+..++++.+.+..+ ....|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344455556666666666666666554322 44456666666666666666666666665532111 123355666666
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041882 262 CFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAY 341 (491)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 341 (491)
...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+..+. +...|..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666553 334456666666677777777777777666665333 5556666662333344777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------HHhHHHHHHHHHcCCCHHHHH
Q 041882 342 KVLTEMQIGGCKPNAATYRMMVDGFLRVED---FEGSLKVLNAMLTSR-HCPR------LETFSCLLVGLLKGGKVDDAC 411 (491)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~ 411 (491)
+.++++.+.. +.+...+..+...+...|+ +++|...++++.+.. -.|+ ...|..+...|...|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7777776643 3335566666666666666 666777777666531 1122 245666777777778888888
Q ss_pred HHHHHHHHC
Q 041882 412 FVLEEMEKR 420 (491)
Q Consensus 412 ~~~~~~~~~ 420 (491)
..++++.+.
T Consensus 242 ~~~~~al~~ 250 (272)
T 3u4t_A 242 AAWKNILAL 250 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888777764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-13 Score=122.73 Aligned_cols=163 Identities=12% Similarity=0.053 Sum_probs=69.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc--CHHHHHHHHHHHH
Q 041882 80 ASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVR--TLQSFNSLLDILV 157 (491)
Q Consensus 80 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~ 157 (491)
......+...|+++.|.+.++.+.+.. +.+...+..+...+...|++++|+..+++.......+ ...+|..+..++.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 333444444455555555555444433 2233344444444445555555555554444421000 1122444444444
Q ss_pred hCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 041882 158 DNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKG 237 (491)
Q Consensus 158 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 237 (491)
..|++++|+..|++..+.. +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+...+...+++++|..
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544444432 1123344444444444445555544444444431 1133333333312222334444444
Q ss_pred HHHHHHHc
Q 041882 238 LFEDMIKK 245 (491)
Q Consensus 238 ~~~~~~~~ 245 (491)
.|+++.+.
T Consensus 164 ~~~~a~~~ 171 (272)
T 3u4t_A 164 SFVKVLEL 171 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-14 Score=124.23 Aligned_cols=200 Identities=13% Similarity=0.089 Sum_probs=145.9
Q ss_pred CCCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 041882 42 KEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHY 121 (491)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (491)
..+......+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+..++..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 344556667788899999999999988754 5567788888888899999999999999888775 55778888888888
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 041882 122 GKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEAS 201 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 201 (491)
...|++++|++.++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 88999999999998887765 2367788888888888888888888888887653 235667777888888888888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041882 202 RVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKG 246 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 246 (491)
+.++.+.+... .+..++..+..+|...|++++|...++++.+..
T Consensus 180 ~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 180 SQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 88888777543 356777888888888888888888888887753
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-13 Score=126.85 Aligned_cols=230 Identities=7% Similarity=0.028 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCC-hhhHHHHHHHHHHCCCCCCHHhHHHHHH
Q 041882 111 ETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDR-VDDAKRMFDDADKMGFRPNLISFNVMIK 189 (491)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 189 (491)
..++..+...+...|++++|+..++++...+.. +..+|+.+..++...|+ +++|+..|+++++.... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 466777888888889999999999998877633 77888889999999996 99999999998886422 6778888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHh
Q 041882 190 GRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCF-KGEYN 268 (491)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~ 268 (491)
++...|++++|+..|+++++.... +...|..+..++...|++++|+..|+++++.... +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 888889999999999988887544 7788888888888899999999999998887544 67788888888887 55546
Q ss_pred HH-----HHHHHHHHHcCCCCChhcHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC------
Q 041882 269 EA-----KKMMFDMAYRGCKPQLVNFGVLMSDLGKRG--KIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKED------ 335 (491)
Q Consensus 269 ~a-----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~------ 335 (491)
+| +..++..+... +-+...|..+..++...| ++++|.+.+.++ +... .+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p-~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH-SSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC-CCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC-CCHHHHHHHHHHHHHHhcccccc
Confidence 66 46677666653 334556666666666666 567777777766 3322 25666777777776653
Q ss_pred ---CHHHHHHHHHHH
Q 041882 336 ---RAAEAYKVLTEM 347 (491)
Q Consensus 336 ---~~~~a~~~~~~~ 347 (491)
..++|.++++++
T Consensus 330 ~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 330 KEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 246777777776
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-12 Score=115.41 Aligned_cols=220 Identities=10% Similarity=-0.039 Sum_probs=106.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041882 183 SFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCR----TGEMGKAKGLFEDMIKKGTYPNAVTYALLM 258 (491)
Q Consensus 183 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 258 (491)
++..+...+...|++++|.+.|++..+. -+...+..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 3333444444444444444444444442 123344444444444 444444444444444432 334444444
Q ss_pred HHHHh----cCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041882 259 EGLCF----KGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGK----RGKIEEAKSLLSEMKKRQYKPDVVTYNILINY 330 (491)
Q Consensus 259 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 330 (491)
..|.. .+++++|...++...+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 44444 444444444444444432 33344444444444 455555555555555432 33444445555
Q ss_pred HHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041882 331 LCK----EDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLR----VEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLL 402 (491)
Q Consensus 331 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 402 (491)
|.. .+++++|...+++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+...|.
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 229 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 554 555555555555555432 33444455555555 556666666666555543 1444455555555
Q ss_pred c----CCCHHHHHHHHHHHHHC
Q 041882 403 K----GGKVDDACFVLEEMEKR 420 (491)
Q Consensus 403 ~----~g~~~~a~~~~~~~~~~ 420 (491)
. .|++++|...|++..+.
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHHc
Confidence 5 56666666666665554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-12 Score=115.27 Aligned_cols=221 Identities=10% Similarity=0.001 Sum_probs=102.1
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCcCHHHHHH
Q 041882 76 YPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGK----AHLVDKAIEVFNRMTSFDCVRTLQSFNS 151 (491)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 151 (491)
..++..+...+...|++++|.+.|+...+. .+...+..+...+.. .+++++|+..|++..+.+ +..++..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344444455555555555555555555442 233444445555555 555555555555554432 4444555
Q ss_pred HHHHHHh----CCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 041882 152 LLDILVD----NDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLK----KGEWEEASRVFDEMLEREVPPTVVTYNSLI 223 (491)
Q Consensus 152 ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 223 (491)
+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 5555555 555555555555554432 34444444444444 455555555555544433 333444444
Q ss_pred HHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCChhcHHHHHHH
Q 041882 224 GFLCR----TGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCF----KGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSD 295 (491)
Q Consensus 224 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 295 (491)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...++...+.+ +...+..+...
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 44444 445555555554444432 23334444444444 444444444444444432 12233333334
Q ss_pred HHh----cCChHHHHHHHHHHHH
Q 041882 296 LGK----RGKIEEAKSLLSEMKK 314 (491)
Q Consensus 296 ~~~----~~~~~~a~~~~~~~~~ 314 (491)
|.. .+++++|...|++..+
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHH
Confidence 443 4444444444444443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-13 Score=130.35 Aligned_cols=347 Identities=11% Similarity=-0.013 Sum_probs=229.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHhhhCCCCcCHHHHHHHHHHHH
Q 041882 81 SLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLV---DKAIEVFNRMTSFDCVRTLQSFNSLLDILV 157 (491)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 157 (491)
.+...+.+.|++++|.++|+...+.+ +...+..+...|...|+. ++|+..|++..+. +...+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35667788999999999999998876 334455666667777888 8999999998863 6667777877666
Q ss_pred hCC-----ChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 041882 158 DND-----RVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWE---EASRVFDEMLEREVPPTVVTYNSLIGFLCRT 229 (491)
Q Consensus 158 ~~~-----~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 229 (491)
..+ ++++|+..|++..+.|. ...+..|...|...+..+ .+.+.+......| +...+..+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 655 78899999999998763 236667777777665543 4555555555544 456777888888888
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhc----CCh
Q 041882 230 GEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKG---EYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKR----GKI 302 (491)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~ 302 (491)
+.++++......+.+.-...++..+..+...|...| +.++|...|+...+.| .++...+..+...|... +++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCH
Confidence 866655554333333212223337788888888999 9999999999999887 55555556677777554 799
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHH
Q 041882 303 EEAKSLLSEMKKRQYKPDVVTYNILINY-L--CKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVE-----DFEG 374 (491)
Q Consensus 303 ~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~ 374 (491)
++|...|+... . -+...+..+... | ...+++++|.+.|++..+.| +...+..+...|. .| ++++
T Consensus 234 ~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 99999999988 3 256667777776 4 46899999999999999866 6677777777776 55 9999
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCCcchh
Q 041882 375 SLKVLNAMLTSRHCPRLETFSCLLVGLLK----GGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIG----DGNAGGL 446 (491)
Q Consensus 375 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~~~ 446 (491)
|...|++.. . -+...+..+...|.. ..++++|..+|++..+.|. ......|...|... .+...+.
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 999999988 4 356777777777766 4499999999999998763 33444454444432 2344455
Q ss_pred HHHHHHhhhh
Q 041882 447 VEIRDMRDYS 456 (491)
Q Consensus 447 ~~~~~m~~~~ 456 (491)
..+....+.|
T Consensus 379 ~~~~~A~~~g 388 (452)
T 3e4b_A 379 VFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHCC
Confidence 5555444444
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-13 Score=118.18 Aligned_cols=200 Identities=14% Similarity=0.112 Sum_probs=155.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHH
Q 041882 77 PSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDIL 156 (491)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 156 (491)
..+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|++.|+++..... .+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence 456777778888999999999999988875 55778888888899999999999999988877642 3677888888888
Q ss_pred HhCCChhhHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHH
Q 041882 157 VDNDRVDDAKRMFDDADKMGFRP-NLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKA 235 (491)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 235 (491)
...|++++|...++++...+..| +...+..+..++...|++++|.+.++++.+... .+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888887732334 455677777788888888888888888777543 2567777788888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 041882 236 KGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (491)
...++.+.+... .+...+..+...+...|++++|.+.++.+.+.
T Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888776533 35666777777777888888888888877765
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.9e-13 Score=114.70 Aligned_cols=201 Identities=16% Similarity=0.097 Sum_probs=105.9
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHH
Q 041882 76 YPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDI 155 (491)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 155 (491)
...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.++++.... +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3445555555666666666666666655544 3345555556666666666666666666655443 1244555555555
Q ss_pred HHhC-CChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 041882 156 LVDN-DRVDDAKRMFDDADKMGFRPN-LISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMG 233 (491)
Q Consensus 156 ~~~~-~~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 233 (491)
+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+.... +...+..+..++...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHH
Confidence 5555 666666666655554211222 344455555555555555555555555543221 3445555555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 041882 234 KAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAY 279 (491)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (491)
+|...++.+.+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5555555555442212444444444445555555555555555443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-14 Score=126.36 Aligned_cols=250 Identities=11% Similarity=-0.056 Sum_probs=176.5
Q ss_pred HhhhcCChHHHHHHHHHhhhCCC---CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041882 50 DLKEIRDPDEALSLFHRHHQMGS---KHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHL 126 (491)
Q Consensus 50 ~l~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 126 (491)
.+...|++++|+..|+.+.+... +.+..++..+...+...|++++|.+.++.+.+.. +.+..++..+...+...|+
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccC
Confidence 34556899999999999887532 1245678888888999999999999999988876 5678889999999999999
Q ss_pred HHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 041882 127 VDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDE 206 (491)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 206 (491)
+++|+..|++...... .+..++..+..++...|++++|...|+++.+. .|+.......+..+...|++++|...++.
T Consensus 93 ~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999887653 36778888899999999999999999988875 35544455555566777888888888877
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 041882 207 MLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYP---NAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCK 283 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (491)
..... +++...+ .++..+...++.++|...++......... +..++..+...+...|++++|...++......
T Consensus 170 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 245 (275)
T 1xnf_A 170 HFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-- 245 (275)
T ss_dssp HHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--
Confidence 76653 2243344 36666777777888888888776542110 13556666777777777777777777776553
Q ss_pred CChhcHHHHHHHHHhcCChHHHHHHH
Q 041882 284 PQLVNFGVLMSDLGKRGKIEEAKSLL 309 (491)
Q Consensus 284 ~~~~~~~~ll~~~~~~~~~~~a~~~~ 309 (491)
|+. +.....++...|++++|.+.+
T Consensus 246 p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CTT--CHHHHHHHHHHHHHHHC----
T ss_pred chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 321 122233445555566655544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-14 Score=125.00 Aligned_cols=221 Identities=12% Similarity=0.056 Sum_probs=93.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 041882 184 FNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCF 263 (491)
Q Consensus 184 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 263 (491)
+..+..++...|++++|...|+++.+.... +..+|..+...+...|++++|...|+++.+.... +..++..+..++..
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~ 123 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYY 123 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHH
Confidence 334444444444444444444444433211 3344444444444444444444444444443211 23344444444444
Q ss_pred cCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041882 264 KGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKV 343 (491)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 343 (491)
.|++++|...++.+.+.. |+.......+..+...|++++|...++........ +...+. ++..+...++.++|...
T Consensus 124 ~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~a~~~ 199 (275)
T 1xnf_A 124 GGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK-EQWGWN-IVEFYLGNISEQTLMER 199 (275)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC-CSTHHH-HHHHHTTSSCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-chHHHH-HHHHHHHhcCHHHHHHH
Confidence 444444444444444431 22222222222333445555555555444443221 222222 33344444555555555
Q ss_pred HHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHH
Q 041882 344 LTEMQIGGCK---PNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVL 414 (491)
Q Consensus 344 ~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 414 (491)
+++....... .+..++..+...+...|++++|...|+++.+.. |+. +.....++...|++++|.+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 200 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 5554432100 012445555555556666666666666665532 211 122233444555555555443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.61 E-value=7e-13 Score=113.74 Aligned_cols=200 Identities=9% Similarity=-0.041 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 041882 217 VTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDL 296 (491)
Q Consensus 217 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 296 (491)
..+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++...+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 3344444444444555555555544444321 134444444444455555555555555444432 22334444445555
Q ss_pred Hhc-CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 041882 297 GKR-GKIEEAKSLLSEMKKRQYKP-DVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEG 374 (491)
Q Consensus 297 ~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 374 (491)
... |++++|...++.+.+....| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 555 55555555555554411111 23445555555555566666665555555432 2334555555555566666666
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 375 SLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 375 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
|...++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 666666555532112344455555555566666666666665554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-13 Score=119.78 Aligned_cols=59 Identities=10% Similarity=-0.040 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 359 YRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
+..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|...++++.
T Consensus 162 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 162 RFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3333333333344444444443333321 1123333334444444444444444444443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-10 Score=112.64 Aligned_cols=393 Identities=9% Similarity=-0.004 Sum_probs=197.4
Q ss_pred hHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---HHHHHHH
Q 041882 57 PDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHL---VDKAIEV 133 (491)
Q Consensus 57 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~ 133 (491)
..+.+..|++.+..+ +-|...|..++..+.+.++++.+..+|+.+...- |.....|...+..-.+.+. ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 344444555555444 4567777777777777777777777777777653 5566667766666666666 7777777
Q ss_pred HHHhhhCC-CCcCHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHC-CC-CCC-HHhHHHHHHHHHh--------
Q 041882 134 FNRMTSFD-CVRTLQSFNSLLDILVDNDRV--------DDAKRMFDDADKM-GF-RPN-LISFNVMIKGRLK-------- 193 (491)
Q Consensus 134 ~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~~-~~-~p~-~~~~~~ll~~~~~-------- 193 (491)
|++..... ..|++..|...+....+.++. +.+.++|+..... |. .++ ...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 77766543 125666676666655444432 2233555554432 44 343 3455555544321
Q ss_pred -cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-------------cCChhH-------------------------
Q 041882 194 -KGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCR-------------TGEMGK------------------------- 234 (491)
Q Consensus 194 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~~~~~~------------------------- 234 (491)
.++++.+.++|++++......-..+|......-.. ..+++.
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 23355566666666542111111122111100000 001112
Q ss_pred ------------------------------------------HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHH-
Q 041882 235 ------------------------------------------AKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAK- 271 (491)
Q Consensus 235 ------------------------------------------a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~- 271 (491)
+..+|++++.. .+-+...|...+.-+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 22333333332 1123344444444444555555664
Q ss_pred HHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHH
Q 041882 272 KMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQY---------KPD------------VVTYNILINY 330 (491)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~li~~ 330 (491)
.+|+..... ++.+...+-..+....+.|+++.|..+|+.+..... .|+ ..+|...+..
T Consensus 365 ~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 666666543 233333444555555666666666666666654310 121 2245555555
Q ss_pred HHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHH
Q 041882 331 LCKEDRAAEAYKVLTEMQIG-GCKPNAATYRMMVDGFLRV-EDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVD 408 (491)
Q Consensus 331 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 408 (491)
..+.|+.+.|..+|.+..+. + ......|...+..-.+. ++.+.|..+|+..++. ++.+...+..++......|+.+
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence 55566666666666666553 1 11223333222222222 3366666666666664 2234455556666666666666
Q ss_pred HHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCCcchhHHHHHHhhh
Q 041882 409 DACFVLEEMEKRKMRF--DLKAWEGLVTDACIGDGNAGGLVEIRDMRDY 455 (491)
Q Consensus 409 ~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~ 455 (491)
.|..+|++.......+ ....|..++.-=...|+.+.+.+..+++.+.
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666542211 2345666665444455554444444544443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-13 Score=128.73 Aligned_cols=300 Identities=13% Similarity=0.008 Sum_probs=194.6
Q ss_pred cCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-C
Q 041882 144 RTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPN----LISFNVMIKGRLKKGEWEEASRVFDEMLER----EVP-P 214 (491)
Q Consensus 144 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~ 214 (491)
.....+......+...|++++|...|+++.+.... + ...+..+...+...|++++|...+++.... +.. .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 45667777888888899999999999988876321 2 246777788888889999999988886543 111 1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCC--------------------HhH
Q 041882 215 TVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTY-PN----AVTYALLMEGLCFKGE--------------------YNE 269 (491)
Q Consensus 215 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~--------------------~~~ 269 (491)
...++..+...+...|++++|...+++..+.... .+ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2456777888888889999999888888765111 12 3366777777888888 888
Q ss_pred HHHHHHHHHHc----CCC-CChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHH
Q 041882 270 AKKMMFDMAYR----GCK-PQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYK-PD----VVTYNILINYLCKEDRAAE 339 (491)
Q Consensus 270 a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~ 339 (491)
|...+...... +.. ....++..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 88877766542 111 11335666777777788888888888776653111 12 2266677777777888888
Q ss_pred HHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHcCCCHHH
Q 041882 340 AYKVLTEMQIGGC-KPN----AATYRMMVDGFLRVEDFEGSLKVLNAMLTS----RHCP-RLETFSCLLVGLLKGGKVDD 409 (491)
Q Consensus 340 a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~ 409 (491)
|...+++..+... ..+ ..++..+...+...|++++|...++++.+. +..+ ...++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 8888777654310 111 345666677777778888888877777653 1111 14466667777777888888
Q ss_pred HHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCCcc
Q 041882 410 ACFVLEEMEKR----KMRF-DLKAWEGLVTDACIGDGNAG 444 (491)
Q Consensus 410 a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~ 444 (491)
|...+++..+. +..+ ...++..+...+...|+...
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 88777776532 1111 13344455555555555433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-13 Score=128.38 Aligned_cols=302 Identities=12% Similarity=0.006 Sum_probs=156.1
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCC-c
Q 041882 74 HSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCK----ETLFISLIQHYGKAHLVDKAIEVFNRMTSF----DCV-R 144 (491)
Q Consensus 74 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~ 144 (491)
.....+......+...|++++|...++.+.+.. +.+ ..++..+...+...|++++|+..+++.... +.. .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 344555666677777777777777777777664 223 245666777777777777777777765332 111 1
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCC-CCC----HHhHHHHHHHHHhcCC--------------------hHH
Q 041882 145 TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGF-RPN----LISFNVMIKGRLKKGE--------------------WEE 199 (491)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~--------------------~~~ 199 (491)
...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 244566677777777777777777776654310 011 2345555666666666 666
Q ss_pred HHHHHHHHHhC----CC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHhHHHHH
Q 041882 200 ASRVFDEMLER----EV-PPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGT-YPNAVTYALLMEGLCFKGEYNEAKKM 273 (491)
Q Consensus 200 a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~ 273 (491)
|.+.+++..+. +. .....++..+...|...|++++|...+++..+... .++..
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------- 224 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA--------------------- 224 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH---------------------
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcH---------------------
Confidence 66655554331 10 01123445555555555555555555555543200 00100
Q ss_pred HHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041882 274 MFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYK-PD----VVTYNILINYLCKEDRAAEAYKVLTEMQ 348 (491)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~ 348 (491)
....++..+...+...|++++|...+++..+.... .+ ..++..+...|...|++++|...+++..
T Consensus 225 ----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 225 ----------AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp ----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 00113334444444444444444444444321000 01 3345555556666666666666665554
Q ss_pred hCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHhHHHHHHHHHcCCCH
Q 041882 349 IGGC-KPN----AATYRMMVDGFLRVEDFEGSLKVLNAMLTS----RHC-PRLETFSCLLVGLLKGGKV 407 (491)
Q Consensus 349 ~~~~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~ 407 (491)
+... ..+ ..++..+...+...|++++|...+++..+. +.. ....++..+...+...|+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 3210 011 334555566666666666666666665542 111 1234555566666666554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.6e-13 Score=125.95 Aligned_cols=274 Identities=14% Similarity=0.024 Sum_probs=148.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhC----C-CCcCHHHH
Q 041882 79 YASLIYKLARARDFDAVETVLGYIQDFNIRCKE----TLFISLIQHYGKAHLVDKAIEVFNRMTSF----D-CVRTLQSF 149 (491)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 149 (491)
+..+...+...|++++|.+.++.+.+.. +.+. .++..+...+...|++++|+..+++.... + ......++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 4445666777888888888888877764 3333 46777777778888888888887776442 1 11234567
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHC----CC-CCCHHhHHHHHHHHHhcCC-----------------hHHHHHHHHHH
Q 041882 150 NSLLDILVDNDRVDDAKRMFDDADKM----GF-RPNLISFNVMIKGRLKKGE-----------------WEEASRVFDEM 207 (491)
Q Consensus 150 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~~ 207 (491)
..+...+...|++++|...+++..+. +- .....++..+...+...|+ +++|.+.+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 77777777788888888777776543 10 1123355566666777777 66666666554
Q ss_pred HhC----CC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 041882 208 LER----EV-PPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTY-PN----AVTYALLMEGLCFKGEYNEAKKMMFDM 277 (491)
Q Consensus 208 ~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~ 277 (491)
.+. +. .....++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|...+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 432 10 111234555566666666666666666665442100 01 123444444555555555555555444
Q ss_pred HHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 041882 278 AYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQY-KPDVVTYNILINYLCKEDRAAEAYKVLTEMQIG----GC 352 (491)
Q Consensus 278 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~ 352 (491)
..... ..+. .....++..+...|...|++++|...+++..+. +.
T Consensus 290 l~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 290 LALAV-------------------------------ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHH-------------------------------HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 33210 0000 001234444555555555555555555554332 00
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 353 -KPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 353 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
.....++..+...+...|++++|...+++..+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 00122444555556666666666666666555
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-13 Score=128.04 Aligned_cols=276 Identities=12% Similarity=-0.001 Sum_probs=173.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCH----HHHHHHHHHHHhCCChhhHHHHHHHHHHC----CC-CCCHHh
Q 041882 113 LFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTL----QSFNSLLDILVDNDRVDDAKRMFDDADKM----GF-RPNLIS 183 (491)
Q Consensus 113 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~~ 183 (491)
.+..+...+...|++++|+..|++....+.. +. .+|..+..++...|++++|...+++..+. +. ......
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445566677778888888888877665422 32 46677777777778888887777766543 11 112345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHHhcCC-----------------hhHHHHHHHH
Q 041882 184 FNVMIKGRLKKGEWEEASRVFDEMLERE-----VPPTVVTYNSLIGFLCRTGE-----------------MGKAKGLFED 241 (491)
Q Consensus 184 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~ 241 (491)
+..+...+...|++++|...+++..+.. ......++..+...|...|+ +++|++.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 5566666667777777777766654421 11123345555555556666 4444444444
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C
Q 041882 242 MIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGC-KPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYK-P 319 (491)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~ 319 (491)
..+. .. ..+. ......+..+...+...|++++|...+++..+.... .
T Consensus 209 al~~----------------------------~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 209 NLKL----------------------------MR---DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHH----------------------------HH---HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH----------------------------HH---HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 3321 00 0000 011234555556666666666666666655442110 0
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C
Q 041882 320 D----VVTYNILINYLCKEDRAAEAYKVLTEMQIGGC----K-PNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS----R 386 (491)
Q Consensus 320 ~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~ 386 (491)
+ ..++..+...|...|++++|...+++..+... . ....++..+...+...|++++|...+++..+. +
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 23677788888899999999998888765310 0 11457778888999999999999999988764 1
Q ss_pred CC-CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 387 HC-PRLETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 387 ~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
.. ....++..+..+|...|++++|...+++..+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11 12557888999999999999999999999875
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-10 Score=113.21 Aligned_cols=392 Identities=10% Similarity=0.038 Sum_probs=264.7
Q ss_pred CCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCC---hhHHHHHHHHHHhcC-CCCCHHHHHHHH
Q 041882 43 EPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARD---FDAVETVLGYIQDFN-IRCKETLFISLI 118 (491)
Q Consensus 43 ~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~~~l~ 118 (491)
.|..++..+...+..+.+..+|+++... .+.+...|..-+..-.+.++ ++.+.++|++..... .+|+...|...+
T Consensus 68 ~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl 146 (679)
T 4e6h_A 68 LYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYI 146 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4567888888889999999999999975 46677788888888888888 999999999998865 247888888888
Q ss_pred HHHHhcCCH--------HHHHHHHHHhhh-CCC-Cc-CHHHHHHHHHHHHh---------CCChhhHHHHHHHHHHCCCC
Q 041882 119 QHYGKAHLV--------DKAIEVFNRMTS-FDC-VR-TLQSFNSLLDILVD---------NDRVDDAKRMFDDADKMGFR 178 (491)
Q Consensus 119 ~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~ 178 (491)
....+.++. +...++|+.... .|. .+ +...|...+..... .++.+.+..+|+..+.....
T Consensus 147 ~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~ 226 (679)
T 4e6h_A 147 TYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMD 226 (679)
T ss_dssp HHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccH
Confidence 776665543 334467776543 344 33 45788888766542 33466777788777753211
Q ss_pred CCHHhHHHHHHHHHh-------------cCChHH----------------------------------------------
Q 041882 179 PNLISFNVMIKGRLK-------------KGEWEE---------------------------------------------- 199 (491)
Q Consensus 179 p~~~~~~~ll~~~~~-------------~~~~~~---------------------------------------------- 199 (491)
.-..+|......-.. ..+++.
T Consensus 227 ~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~ 306 (679)
T 4e6h_A 227 CLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWL 306 (679)
T ss_dssp SHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHH
Confidence 111222111110000 001111
Q ss_pred ---------------------HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHH-HHHHHHHHcCCCCCHHHHHHH
Q 041882 200 ---------------------ASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAK-GLFEDMIKKGTYPNAVTYALL 257 (491)
Q Consensus 200 ---------------------a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l 257 (491)
+..+|++++.. .+-+...|...+..+...|+.++|. .+|++.... .+.+...+...
T Consensus 307 ~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~ 384 (679)
T 4e6h_A 307 EWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSL 384 (679)
T ss_dssp HHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHH
T ss_pred HHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 12233333332 1224445555566666778888996 999999875 44466677778
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcC---------CCCC------------hhcHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 041882 258 MEGLCFKGEYNEAKKMMFDMAYRG---------CKPQ------------LVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQ 316 (491)
Q Consensus 258 l~~~~~~~~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 316 (491)
+......|+++.|..+|+.+.... ..|+ ..+|...+....+.|+.+.|..+|..+.+.-
T Consensus 385 a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~ 464 (679)
T 4e6h_A 385 SEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK 464 (679)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 888889999999999999988641 0132 2357777787788899999999999998761
Q ss_pred CCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHh
Q 041882 317 YKPDVVTYNILINYLCKE-DRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCP--RLET 393 (491)
Q Consensus 317 ~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 393 (491)
.......|...+..-.+. ++.+.|..+|+...+. .+-+...+...+......|+.+.|..+|++.+.....+ ....
T Consensus 465 ~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~l 543 (679)
T 4e6h_A 465 KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMI 543 (679)
T ss_dssp GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHH
T ss_pred CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 112334444333333344 4589999999999876 34566667788888888999999999999999874321 3567
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041882 394 FSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDG 441 (491)
Q Consensus 394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 441 (491)
|..++..-.+.|+.+.+..+.+++.+. .|+......+.. -++.++
T Consensus 544 w~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~-ry~~~~ 588 (679)
T 4e6h_A 544 FQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTN-KYKVLD 588 (679)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHH-HTCBTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHH-HhcCCc
Confidence 888888888999999999999999986 345444444444 344444
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.7e-12 Score=118.36 Aligned_cols=230 Identities=9% Similarity=-0.041 Sum_probs=153.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC--CC----CCHHHHH
Q 041882 187 MIKGRLKKGEWEEASRVFDEMLER----EVPP-TVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKG--TY----PNAVTYA 255 (491)
Q Consensus 187 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~ 255 (491)
....+...|++++|...|++..+. +-.+ ...++..+...|...|++++|...+++..+.- .. ....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444566778888888888877653 1111 23567777788888888888888888776531 11 1134667
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCC-CC----hhcHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCCHHHHH
Q 041882 256 LLMEGLCFKGEYNEAKKMMFDMAYRGCK-PQ----LVNFGVLMSDLGKRGKIEEAKSLLSEMKKR----QY-KPDVVTYN 325 (491)
Q Consensus 256 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 325 (491)
.+..+|...|++++|...+++..+.... .+ ..++..+..+|...|++++|...+++..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777888888888888888776653100 11 235677778888888888888888877662 22 22456777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CHHhHHHH
Q 041882 326 ILINYLCKEDRAAEAYKVLTEMQIG----GCKPNAATYRMMVDGFLRVED---FEGSLKVLNAMLTSRHCP-RLETFSCL 397 (491)
Q Consensus 326 ~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l 397 (491)
.+...|...|++++|...+++..+. +-+.....+..+...+...|+ +++|..++++. +..+ ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8888888888888888888877543 111112234556667777777 66666666654 2222 34466778
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH
Q 041882 398 LVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 398 ~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
...|...|++++|...+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888888764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-12 Score=119.68 Aligned_cols=275 Identities=12% Similarity=0.032 Sum_probs=140.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----C-CCcCHHHH
Q 041882 79 YASLIYKLARARDFDAVETVLGYIQDFNIRCK----ETLFISLIQHYGKAHLVDKAIEVFNRMTSF----D-CVRTLQSF 149 (491)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 149 (491)
+......+...|++++|...++.+.+.. +.+ ..++..+...+...|++++|++.+++.... + .+....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3444556666777777777777766654 223 245666666777777777777776665332 1 01124456
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHCCC-CCC----HHhHHHHHHHHHhcCC--------------------hHHHHHHH
Q 041882 150 NSLLDILVDNDRVDDAKRMFDDADKMGF-RPN----LISFNVMIKGRLKKGE--------------------WEEASRVF 204 (491)
Q Consensus 150 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~ 204 (491)
..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.+.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 6666666777777777776666544210 011 2245555556666666 55555555
Q ss_pred HHHHhC----C-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 041882 205 DEMLER----E-VPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGT-YPNAVTYALLMEGLCFKGEYNEAKKMMFDMA 278 (491)
Q Consensus 205 ~~~~~~----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (491)
++.... + .......+..+...+...|++++|...+++..+... .++.
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--------------------------- 219 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK--------------------------- 219 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH---------------------------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh---------------------------
Confidence 554321 0 001122444455555555555555555555443200 0000
Q ss_pred HcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 041882 279 YRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYK-PD----VVTYNILINYLCKEDRAAEAYKVLTEMQIG--- 350 (491)
Q Consensus 279 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--- 350 (491)
.....++..+...+...|++++|...+++..+.... .+ ..++..+...|...|++++|...+++..+.
T Consensus 220 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 220 ----AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp ----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 000123344444445555555555555444322100 01 334555566666666666666666655432
Q ss_pred -CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 351 -GCK-PNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 351 -~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 385 (491)
+.. ....++..+...+...|++++|...++++.+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 100 11234555666666777777777777766653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.50 E-value=9.5e-12 Score=103.07 Aligned_cols=165 Identities=12% Similarity=-0.015 Sum_probs=70.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHH
Q 041882 216 VVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSD 295 (491)
Q Consensus 216 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 295 (491)
+.+|..+...|...|++++|++.|++.++.... +..++..+..+|...|++++|...+....... +.+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 334444444444444444444444444443222 33444444444444444444444444444332 2223333333344
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 296 LGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGS 375 (491)
Q Consensus 296 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 375 (491)
+...++++.+...+.......+. +...+..+...|.+.|++++|++.|++..+.. +.+..++..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 44444444444444444443222 33444444444444444444444444444332 22333444444444444444444
Q ss_pred HHHHHHHHh
Q 041882 376 LKVLNAMLT 384 (491)
Q Consensus 376 ~~~~~~~~~ 384 (491)
...|+++++
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444444
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-12 Score=119.93 Aligned_cols=278 Identities=12% Similarity=0.005 Sum_probs=168.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcC----HHHHHHHHHHHHhCCChhhHHHHHHHHHHC----CCCC-CHHhH
Q 041882 114 FISLIQHYGKAHLVDKAIEVFNRMTSFDCVRT----LQSFNSLLDILVDNDRVDDAKRMFDDADKM----GFRP-NLISF 184 (491)
Q Consensus 114 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~ 184 (491)
+......+...|++++|+..|+++...... + ...+..+...+...|++++|...+++.... +..| ....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 344455666777777777777776654322 2 345666666777777777777776665432 1111 13344
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCC-------------hhHHHHHHHHHHHcC
Q 041882 185 NVMIKGRLKKGEWEEASRVFDEMLEREVP-PT----VVTYNSLIGFLCRTGE-------------MGKAKGLFEDMIKKG 246 (491)
Q Consensus 185 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~-------------~~~a~~~~~~~~~~~ 246 (491)
..+...+...|++++|...+++..+.... .+ ..++..+...+...|+ .+++...
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-------- 158 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA-------- 158 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH--------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH--------
Confidence 55555666666666666666554432100 01 2244445555555555 0000000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CC-CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCC----
Q 041882 247 TYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR----GC-KPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQY---- 317 (491)
Q Consensus 247 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---- 317 (491)
+++|...+++.... +. ......+..+...+...|++++|...+++..+...
T Consensus 159 --------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 159 --------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred --------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 44444443333221 10 11123455666677777777777777776654311
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 041882 318 -KPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGC-KPN----AATYRMMVDGFLRVEDFEGSLKVLNAMLTS----RH 387 (491)
Q Consensus 318 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~ 387 (491)
.....++..+...+...|++++|...+++..+... ..+ ..++..+...+...|++++|...++++.+. +.
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 01133778888999999999999999998765310 111 456778888999999999999999988764 11
Q ss_pred C-CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 388 C-PRLETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 388 ~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
. ....++..+...|.+.|++++|...+++..+.
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1 12447788999999999999999999999865
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-11 Score=109.86 Aligned_cols=218 Identities=11% Similarity=0.111 Sum_probs=129.7
Q ss_pred HHHHHHHHHhhhCCCCCCHHhHHHHHHHHHh-------cCCh-------hHHHHHHHHHHh-cCCCCCHHHHHHHHHHHH
Q 041882 58 DEALSLFHRHHQMGSKHSYPSYASLIYKLAR-------ARDF-------DAVETVLGYIQD-FNIRCKETLFISLIQHYG 122 (491)
Q Consensus 58 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 122 (491)
++|+.+|+++.... +.++..|..++..+.. .|++ ++|..+|++..+ .. +.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 67778888877643 5667777777766653 4665 677777777776 33 445566777777777
Q ss_pred hcCCHHHHHHHHHHhhhCCCCcCHH-HHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHH-hcCChHHH
Q 041882 123 KAHLVDKAIEVFNRMTSFDCVRTLQ-SFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRL-KKGEWEEA 200 (491)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~-~~~~~~~a 200 (491)
+.|++++|..+|++..+.... +.. +|..++..+.+.|++++|..+|++..+... .+...|........ ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777664311 232 666666666666777777777776665431 22333332222211 24666666
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 041882 201 SRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKG-TYP--NAVTYALLMEGLCFKGEYNEAKKMMFDM 277 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 277 (491)
.++|+...+... -+...|..++..+.+.|++++|..+|++..... ..| ....|..++......|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666655422 245566666666666666666666666666542 232 2445555555555666666666666665
Q ss_pred HHc
Q 041882 278 AYR 280 (491)
Q Consensus 278 ~~~ 280 (491)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.49 E-value=6.3e-11 Score=106.96 Aligned_cols=184 Identities=11% Similarity=0.023 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-hh-cHHHHHHHHHhcCChHHHHHHHH
Q 041882 233 GKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQ-LV-NFGVLMSDLGKRGKIEEAKSLLS 310 (491)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~ 310 (491)
++|..+|++.++.-.+-+...|..++..+...|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555555555554211113445555555555555555555555555543 232 22 45555566666666666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC
Q 041882 311 EMKKRQYKPDVVTYNILINYLC-KEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSR-HC 388 (491)
Q Consensus 311 ~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~ 388 (491)
+..+.... +...|...+.... ..|++++|..+|++..+.. +-+...|..++..+.+.|++++|..+|++++... ++
T Consensus 159 ~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 66654332 3333433322221 2577777777777776542 3456667777777777788888888888877752 34
Q ss_pred C--CHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 389 P--RLETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 389 ~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
| ....|..++..+.+.|+.++|..+++++.+.
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 3557777777777788888888888887764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-11 Score=102.63 Aligned_cols=167 Identities=15% Similarity=0.127 Sum_probs=94.4
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHH
Q 041882 75 SYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLD 154 (491)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 154 (491)
+...|..+...+...|++++|.+.|+...+.. |.+..++..+...+.+.|++++|+..++....... .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 34556666666666666666666666666554 44555566666666666666666666666554432 24455555555
Q ss_pred HHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhH
Q 041882 155 ILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGK 234 (491)
Q Consensus 155 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 234 (491)
.+...++++.+...+.+..... +-+...+..+..++.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 5556666666666665555442 223445555555555666666666666655554322 45555555556666666666
Q ss_pred HHHHHHHHHHc
Q 041882 235 AKGLFEDMIKK 245 (491)
Q Consensus 235 a~~~~~~~~~~ 245 (491)
|++.|++.++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 66666555543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-12 Score=122.94 Aligned_cols=216 Identities=9% Similarity=-0.029 Sum_probs=169.1
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHH
Q 041882 91 DFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLV-DKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMF 169 (491)
Q Consensus 91 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 169 (491)
.++.+.+.++...... +.+...+..+...+...|++ ++|++.|++..+.+. .+..+|..+..+|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4567777777766554 45778888888888888888 888888888877653 36788888888888888888888888
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhc---------CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------CCh
Q 041882 170 DDADKMGFRPNLISFNVMIKGRLKK---------GEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRT--------GEM 232 (491)
Q Consensus 170 ~~~~~~~~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~~ 232 (491)
++..+. .|+...+..+..++... |++++|++.|++..+.... +...|..+..+|... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 888876 46677788888888888 8888888888888876433 677888888888888 888
Q ss_pred hHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHH
Q 041882 233 GKAKGLFEDMIKKGTY--PNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLS 310 (491)
Q Consensus 233 ~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 310 (491)
++|+..|++..+.... -+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888876321 377788888888888888888888888888764 4455667777888888888888887665
Q ss_pred HH
Q 041882 311 EM 312 (491)
Q Consensus 311 ~~ 312 (491)
.+
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 54
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-11 Score=115.63 Aligned_cols=294 Identities=10% Similarity=-0.032 Sum_probs=188.2
Q ss_pred HHhcCChhHHHHHHHHHHhcC--CCCCHH--HHHHHHHH--HHhcCCHHHHH-----------HHHHHhhhCCCCcCHHH
Q 041882 86 LARARDFDAVETVLGYIQDFN--IRCKET--LFISLIQH--YGKAHLVDKAI-----------EVFNRMTSFDCVRTLQS 148 (491)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~ 148 (491)
+.+.+++++|..+++.+.+.- +..+.. .|..++.. ....+.++.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 445677777777777765431 222332 22333222 11223333333 5555554321 11111
Q ss_pred ------HHHHHHHHHhCCChhhHHHHHHHHHHC----CCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC--C---
Q 041882 149 ------FNSLLDILVDNDRVDDAKRMFDDADKM----GFRP-NLISFNVMIKGRLKKGEWEEASRVFDEMLERE--V--- 212 (491)
Q Consensus 149 ------~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~--- 212 (491)
+......+...|++++|...|++..+. +-.+ ...++..+..++...|+++.|...+++..+.- .
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 222556677788888888888887654 1111 23567777788888888888888888776531 1
Q ss_pred -CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CC
Q 041882 213 -PPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTY-PN----AVTYALLMEGLCFKGEYNEAKKMMFDMAYR----GC 282 (491)
Q Consensus 213 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~ 282 (491)
.....+++.+...|...|++++|...+++..+.... .+ ..++..+..+|...|++++|...+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 112346777888888889999998888887753110 11 246777888888899999999888887762 22
Q ss_pred -CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC
Q 041882 283 -KPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQ----YKPDVVTYNILINYLCKEDR---AAEAYKVLTEMQIGGCKP 354 (491)
Q Consensus 283 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~ 354 (491)
+....++..+..++.+.|++++|...+++..+.. -......+..+...|...|+ +++|+.++++. +..+
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHH
Confidence 3335567788888889999999999888776531 11122335667777778888 67777777665 2233
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 355 N-AATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 355 ~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
+ ...+..+...|...|++++|...+++..+
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3 34666788889999999999999998876
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.8e-12 Score=122.10 Aligned_cols=214 Identities=12% Similarity=-0.033 Sum_probs=139.0
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 041882 197 WEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEM-GKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMF 275 (491)
Q Consensus 197 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (491)
++++.+.++...... +.+...+..+..++...|++ ++|++.|++..+.... +...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444444332 22555566666666666666 6666666666554322 45566666666666666666666666
Q ss_pred HHHHcCCCCChhcHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCHH
Q 041882 276 DMAYRGCKPQLVNFGVLMSDLGKR---------GKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKE--------DRAA 338 (491)
Q Consensus 276 ~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~~ 338 (491)
...+. .|+...+..+..++... |++++|...+++..+..+. +...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 66655 34455555666666666 7777777777777766544 667777777777777 7788
Q ss_pred HHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHH
Q 041882 339 EAYKVLTEMQIGGCK---PNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLE 415 (491)
Q Consensus 339 ~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 415 (491)
+|+..|++..+.. + -+...+..+..++...|++++|...|+++.+.. +.+...+..+..++...|++++|.+.+.
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888877642 2 367777788888888888888888888887753 2345667777777888888887776554
Q ss_pred HH
Q 041882 416 EM 417 (491)
Q Consensus 416 ~~ 417 (491)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-12 Score=118.05 Aligned_cols=168 Identities=15% Similarity=0.210 Sum_probs=92.9
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-------CC
Q 041882 77 PSYASLIYKLARARDFDAVETVLGYIQDF-------NIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSF-------DC 142 (491)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~ 142 (491)
.++..+...+...|++++|..+++.+.+. ..+....++..+...+...|++++|+..+++.... +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34455555555666666666666555542 11233445555666666666666666666655432 11
Q ss_pred CcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC------CCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHhC-----
Q 041882 143 VRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM------GFRP-NLISFNVMIKGRLKKGEWEEASRVFDEMLER----- 210 (491)
Q Consensus 143 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----- 210 (491)
+....++..+...+...|++++|...++++.+. +..| ....+..+...+...|++++|.++++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 223445666666666666666666666665543 1111 2334555666666666666666666665543
Q ss_pred -C-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041882 211 -E-VPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIK 244 (491)
Q Consensus 211 -~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 244 (491)
+ .+....++..+..+|...|++++|...++++.+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 111234556666666667777777777666654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-12 Score=118.45 Aligned_cols=170 Identities=16% Similarity=0.187 Sum_probs=122.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-------CCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC------C
Q 041882 110 KETLFISLIQHYGKAHLVDKAIEVFNRMTSF-------DCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM------G 176 (491)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 176 (491)
...++..+...+...|++++|+.+|+++... ..+....++..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567788888889999999999999888663 22335667888888888899999999888887654 1
Q ss_pred C-CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC------CC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc---
Q 041882 177 F-RPNLISFNVMIKGRLKKGEWEEASRVFDEMLER------EV-PPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK--- 245 (491)
Q Consensus 177 ~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 245 (491)
- ......+..+...+...|++++|.+.++++.+. +. +.....+..+...+...|++++|..+++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 223456777778888888888888888887653 11 223456777778888888888888888887654
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 041882 246 ---GTYP-NAVTYALLMEGLCFKGEYNEAKKMMFDMAY 279 (491)
Q Consensus 246 ---~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (491)
+..| ...++..+..++...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 234566777777788888888888777765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=9.1e-11 Score=109.35 Aligned_cols=228 Identities=8% Similarity=-0.054 Sum_probs=148.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC-CC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC--C---CC-CHHHHHH
Q 041882 188 IKGRLKKGEWEEASRVFDEMLEREV-PP----TVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKG--T---YP-NAVTYAL 256 (491)
Q Consensus 188 l~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~~-~~~~~~~ 256 (491)
...+...|++++|...|++..+... .+ ...++..+...|...|+++.|...+++..+.. . .+ ...++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445677888888888887765311 11 24466777778888888888888887776531 1 11 2345667
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHc----CCC-CChhcHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 041882 257 LMEGLCFKGEYNEAKKMMFDMAYR----GCK-PQLVNFGVLMSDLGKRGKIEEAKSLLSEMKK-----RQYKPDVVTYNI 326 (491)
Q Consensus 257 ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 326 (491)
+..+|...|++++|...+.+..+. +.. ....++..+..+|...|++++|...+++..+ .... ...++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHH
Confidence 777788888888888888776653 111 1123566677778888888888888887766 3333 3667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CHHhHHHHH
Q 041882 327 LINYLCKEDRAAEAYKVLTEMQIGGC---KPN-AATYRMMVDGFLRVED---FEGSLKVLNAMLTSRHCP-RLETFSCLL 398 (491)
Q Consensus 327 li~~~~~~~~~~~a~~~~~~~~~~~~---~~~-~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~ 398 (491)
+...|.+.|++++|...+++..+... .+. ...+..+...+...++ +++|..++++ .+..+ ....+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHH
Confidence 78888888888888888887765311 122 2344444455556666 6666666655 22222 234556777
Q ss_pred HHHHcCCCHHHHHHHHHHHHH
Q 041882 399 VGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 399 ~~~~~~g~~~~a~~~~~~~~~ 419 (491)
..|...|++++|...|++..+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888887764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.38 E-value=4.6e-10 Score=104.35 Aligned_cols=200 Identities=17% Similarity=0.077 Sum_probs=95.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC----Chhc
Q 041882 220 NSLIGFLCRTGEMGKAKGLFEDMIKK----GTY--P-NAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKP----QLVN 288 (491)
Q Consensus 220 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 288 (491)
..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+.+........ ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 34444455555555555555554432 111 1 12233444445555555555555555544332110 1123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-C-HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHH
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKP-D-VVTYN----ILINYLCKEDRAAEAYKVLTEMQIGGCKP---NAATY 359 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 359 (491)
+..+...+...|++++|...+++.......+ . ..... ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 4445555556666666666666554321111 1 11111 12233456666666666666654322111 12234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 360 RMMVDGFLRVEDFEGSLKVLNAMLTS----RHCPRL-ETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 360 ~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
..+...+...|++++|...++++... +..++. ..+..+..++...|+.++|...+++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45555666667777776666665442 111111 2445556666677777777777766653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.4e-10 Score=105.24 Aligned_cols=264 Identities=11% Similarity=0.026 Sum_probs=133.4
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCcCH----HHHHHHHHHHHhCCChhhHHHHHHHHHHCCC-CCC----HHhHHHHHHHH
Q 041882 121 YGKAHLVDKAIEVFNRMTSFDCVRTL----QSFNSLLDILVDNDRVDDAKRMFDDADKMGF-RPN----LISFNVMIKGR 191 (491)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~ 191 (491)
+...|++++|...+++........+. .+++.+...+...|++++|...+++...... ..+ ..++..+...+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 34445555555555544332211111 1233444444555555555555554433200 001 11233444455
Q ss_pred HhcCChHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC----CCHHHHHHHHHH
Q 041882 192 LKKGEWEEASRVFDEMLER----EVP--P-TVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTY----PNAVTYALLMEG 260 (491)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~ 260 (491)
...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... ....++..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 5556666666655554432 111 1 1233444555566666666666666665543211 112345555566
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCh-hcHH-----HHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHH
Q 041882 261 LCFKGEYNEAKKMMFDMAYRGCKPQL-VNFG-----VLMSDLGKRGKIEEAKSLLSEMKKRQYKP---DVVTYNILINYL 331 (491)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~ 331 (491)
+...|++++|...+++.......++. ..+. ..+..+...|++++|...++........+ ....+..+...+
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 66666666666666665543111111 1111 12233556777777777776665432211 122455666777
Q ss_pred HhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 332 CKEDRAAEAYKVLTEMQIG----GCKPNA-ATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 332 ~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
...|++++|...+++.... +..++. ..+..+..++...|+.++|...+++...
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7778888888877776432 211122 2455556677788888888888887765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.9e-10 Score=103.82 Aligned_cols=231 Identities=12% Similarity=-0.047 Sum_probs=160.4
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCC-CCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHhCC--C---C-CChhhH
Q 041882 151 SLLDILVDNDRVDDAKRMFDDADKMGF-RPN----LISFNVMIKGRLKKGEWEEASRVFDEMLERE--V---P-PTVVTY 219 (491)
Q Consensus 151 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~ 219 (491)
.....+...|++++|+..|++..+... .++ ..++..+..+|...|+++.|...+++..+.. . . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345556678888888888888765411 122 3466777788888888888888888776531 1 1 124567
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCCChhcHH
Q 041882 220 NSLIGFLCRTGEMGKAKGLFEDMIKK----GTY-PNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR----GCKPQLVNFG 290 (491)
Q Consensus 220 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~ 290 (491)
+.+..+|...|++++|.+.|++..+. +.. ....++..+..+|...|++++|...+++..+. +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 78888888899999999888887653 111 12346777888888899999999988887761 2123356677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCC---C-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 041882 291 VLMSDLGKRGKIEEAKSLLSEMKKRQYK---P-DVVTYNILINYLCKEDR---AAEAYKVLTEMQIGGCKPN-AATYRMM 362 (491)
Q Consensus 291 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~-~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~l 362 (491)
.+..++.+.|++++|...+++..+.... + ....+..+...|...++ +.+|+..+++. +..++ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 7888888999999999999888764211 1 23345556666667777 67777777652 22222 3456677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 041882 363 VDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 363 i~~~~~~~~~~~a~~~~~~~~~ 384 (491)
...|...|++++|...|++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888999999999999988765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-10 Score=95.26 Aligned_cols=164 Identities=12% Similarity=-0.001 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 041882 113 LFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRL 192 (491)
Q Consensus 113 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 192 (491)
.+..+...+...|++++|+..++++..... .+..++..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 344445555555555555555555544331 244555555555555555555555555555432 223445555555555
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 041882 193 KKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKK 272 (491)
Q Consensus 193 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 272 (491)
..|++++|.+.++.+.+... .+...+..+...+...|++++|...++++.+... .+..++..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666665555422 2455555566666666666666666666555432 245555566666666666666666
Q ss_pred HHHHHHHc
Q 041882 273 MMFDMAYR 280 (491)
Q Consensus 273 ~~~~~~~~ 280 (491)
.++...+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 66655543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.5e-10 Score=94.21 Aligned_cols=94 Identities=10% Similarity=0.039 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLL 402 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 402 (491)
.+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 78 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 155 (186)
T 3as5_A 78 VATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYE 155 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHH
Confidence 33333334444444444444444433321 2233333334444444444444444444444331 122334444444444
Q ss_pred cCCCHHHHHHHHHHHH
Q 041882 403 KGGKVDDACFVLEEME 418 (491)
Q Consensus 403 ~~g~~~~a~~~~~~~~ 418 (491)
..|++++|...++++.
T Consensus 156 ~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 156 QMGRHEEALPHFKKAN 171 (186)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4444444444444443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=7.7e-11 Score=117.69 Aligned_cols=167 Identities=9% Similarity=0.044 Sum_probs=143.1
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHH
Q 041882 74 HSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLL 153 (491)
Q Consensus 74 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 153 (491)
.+..+|+.+...+.+.|++++|.+.|++..+.. +.+..++..+..+|.+.|++++|+..|++..+.+.. +..+|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 346788999999999999999999999998876 667888999999999999999999999998876533 688999999
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 041882 154 DILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMG 233 (491)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 233 (491)
.++...|++++|++.|++..+.. +-+...|+.+..++.+.|++++|++.|++..+.... +...+..+..++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 99999999999999999988764 225678888999999999999999999998887543 6788899999999999999
Q ss_pred HHHHHHHHHHH
Q 041882 234 KAKGLFEDMIK 244 (491)
Q Consensus 234 ~a~~~~~~~~~ 244 (491)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988888764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-10 Score=114.63 Aligned_cols=165 Identities=12% Similarity=0.016 Sum_probs=94.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHH
Q 041882 216 VVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSD 295 (491)
Q Consensus 216 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 295 (491)
...|+.+..+|.+.|++++|++.|++.++.... +..++..+..+|.+.|++++|+..|++.++.. +-+...+..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 445555555566666666666666655554222 34555555555666666666666666555543 2334555556666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 296 LGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGS 375 (491)
Q Consensus 296 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 375 (491)
+...|++++|++.|++..+.+.. +...|+.+..+|...|++++|++.|++..+.. +-+...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 66666666666666666555443 55566666666666666666666666665542 33445566666666666666666
Q ss_pred HHHHHHHHh
Q 041882 376 LKVLNAMLT 384 (491)
Q Consensus 376 ~~~~~~~~~ 384 (491)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-09 Score=93.87 Aligned_cols=192 Identities=10% Similarity=-0.079 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 041882 217 VTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDL 296 (491)
Q Consensus 217 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 296 (491)
..+......+...|++++|+..|++..+....++...+..+..++...|++++|...++...+.. +.+...+..+..++
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHH
Confidence 34444444444444444444444444443322344444444444444555555555554444432 22233444444445
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 041882 297 GKRGKIEEAKSLLSEMKKRQYKPDV-------VTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPN---AATYRMMVDGF 366 (491)
Q Consensus 297 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~ 366 (491)
...|++++|...+++..+..+. +. ..|..+...+...|++++|++.|++..+. .|+ ...+..+..++
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHH
Confidence 5555555555555554443322 22 23445555555566666666666665543 333 23444444444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 367 LRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
... +..+++++...+ ..+...|.... ....+.+++|...+++..+.
T Consensus 164 ~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 164 YNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 332 223333333322 11222222222 22334566666666666654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-09 Score=93.90 Aligned_cols=134 Identities=10% Similarity=-0.022 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHH
Q 041882 110 KETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIK 189 (491)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 189 (491)
++..+......+...|++++|+..|++.......++...+..+..++...|++++|+..|++..+... -+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHH
Confidence 45566666666666667777776666666554324555555566666666666666666666665431 13445556666
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041882 190 GRLKKGEWEEASRVFDEMLEREVPPTV-------VTYNSLIGFLCRTGEMGKAKGLFEDMIKK 245 (491)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 245 (491)
++...|++++|.+.+++..+.... +. ..|..+...+...|++++|+..|++..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 666666666666666666554322 33 33555555555566666666666655543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.9e-10 Score=102.11 Aligned_cols=134 Identities=19% Similarity=0.228 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHHC------CCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHhC------C-
Q 041882 146 LQSFNSLLDILVDNDRVDDAKRMFDDADKM------GFRP-NLISFNVMIKGRLKKGEWEEASRVFDEMLER------E- 211 (491)
Q Consensus 146 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~- 211 (491)
..++..+..++...|++++|+..++++.+. +-.| ...++..+..++...|++++|.+.+++..+. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 344555555555555555555555554432 1111 2334455555555556666665555555432 0
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 041882 212 VPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK------GTYP-NAVTYALLMEGLCFKGEYNEAKKMMFDMAY 279 (491)
Q Consensus 212 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (491)
.+....++..+...|...|++++|...++++.+. +..| ...++..+...+...|++++|...+++..+
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122445555666666666666666666665543 1111 234555566666666666666666666554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-10 Score=102.86 Aligned_cols=225 Identities=12% Similarity=0.094 Sum_probs=156.5
Q ss_pred CChHHHHHHHHHhhh-------CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc------C-CCCCHHHHHHHHHH
Q 041882 55 RDPDEALSLFHRHHQ-------MGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDF------N-IRCKETLFISLIQH 120 (491)
Q Consensus 55 ~~~~~A~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~ 120 (491)
|+++.|+..|++..+ ...+....++..+...+...|++++|.+.++.+.+. + .+....++..+...
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 555555555554443 233445667889999999999999999999988764 2 13345678899999
Q ss_pred HHhcCCHHHHHHHHHHhhhC------C-CCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC------CCCC-CHHhHHH
Q 041882 121 YGKAHLVDKAIEVFNRMTSF------D-CVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM------GFRP-NLISFNV 186 (491)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~~~~ 186 (491)
+...|++++|+..|++.... . .+....++..+..++...|++++|...+++..+. +..| ...++..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999998654 1 1234678899999999999999999999998765 1122 3467788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC-------CCCC-ChhhHHHHHHHHHhcCChhHHH------HHHHHHHHcCCCCCHH
Q 041882 187 MIKGRLKKGEWEEASRVFDEMLER-------EVPP-TVVTYNSLIGFLCRTGEMGKAK------GLFEDMIKKGTYPNAV 252 (491)
Q Consensus 187 ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~ll~~~~~~~~~~~a~------~~~~~~~~~~~~~~~~ 252 (491)
+..++...|++++|...++++.+. ...+ ....|..+...+...+....+. ..++.... ..+....
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 253 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNT 253 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHH
Confidence 899999999999999999988763 1222 2333444444444333332222 22222111 1122355
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 041882 253 TYALLMEGLCFKGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 253 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (491)
++..+...|...|++++|..++++..+.
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7888899999999999999999987753
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=3.1e-09 Score=94.91 Aligned_cols=192 Identities=10% Similarity=-0.011 Sum_probs=99.1
Q ss_pred HHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC---CC--ChhcHHHHHH
Q 041882 225 FLCRTGEMGKAKGLFEDMIKK----GTYPN-AVTYALLMEGLCFKGEYNEAKKMMFDMAYRGC---KP--QLVNFGVLMS 294 (491)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~ll~ 294 (491)
.|...|++++|...|++..+. |..++ ..+|+.+..+|...|++++|...+++..+... .+ ...++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666666555555432 11111 23455555555566666666555555443210 00 0224555556
Q ss_pred HHHhc-CChHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHH
Q 041882 295 DLGKR-GKIEEAKSLLSEMKKRQYKP-D----VVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA------ATYRMM 362 (491)
Q Consensus 295 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l 362 (491)
+|... |++++|...|++..+..... + ..+++.+...+.+.|++++|+..|++..+....... ..+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 66664 67777776666665431110 1 234666666777777777777777776654211111 144555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HhHHHHHHHHH--cCCCHHHHHHHHHHHH
Q 041882 363 VDGFLRVEDFEGSLKVLNAMLTSRHCPRL------ETFSCLLVGLL--KGGKVDDACFVLEEME 418 (491)
Q Consensus 363 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 418 (491)
..++...|++++|...|++.++. .|+. ..+..++.++. ..+++++|+..|+++.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 56666677777777777766653 1221 12333444443 3455666666665554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-08 Score=88.33 Aligned_cols=11 Identities=9% Similarity=-0.133 Sum_probs=5.2
Q ss_pred hhcCChHHHHH
Q 041882 52 KEIRDPDEALS 62 (491)
Q Consensus 52 ~~~~~~~~A~~ 62 (491)
--.|++..++.
T Consensus 24 fy~G~yq~~i~ 34 (310)
T 3mv2_B 24 YYTGNFVQCLQ 34 (310)
T ss_dssp HTTTCHHHHTH
T ss_pred HHhhHHHHHHH
Confidence 33455555544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=3.7e-09 Score=94.44 Aligned_cols=161 Identities=8% Similarity=0.028 Sum_probs=83.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC---c--CHHHHHHHH
Q 041882 84 YKLARARDFDAVETVLGYIQDF----NIRC-KETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCV---R--TLQSFNSLL 153 (491)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~ll 153 (491)
..+...|++++|.+.|...... +-++ ...+++.+..+|...|++++|+..|++....... + -..+++.+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455667777777777665543 2111 1345666666666777777776666665432100 0 123555556
Q ss_pred HHHHhC-CChhhHHHHHHHHHHCCCC-CC----HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh------hHHH
Q 041882 154 DILVDN-DRVDDAKRMFDDADKMGFR-PN----LISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVV------TYNS 221 (491)
Q Consensus 154 ~~~~~~-~~~~~a~~~~~~~~~~~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~ 221 (491)
.+|... |++++|+..|++..+.... .+ ..++..+...+.+.|++++|...|++..+........ .|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 666664 6666666666655442100 00 2344555555566666666666666555543221110 3444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 041882 222 LIGFLCRTGEMGKAKGLFEDMIK 244 (491)
Q Consensus 222 ll~~~~~~~~~~~a~~~~~~~~~ 244 (491)
+..++...|++++|...|++..+
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555666666666555544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.14 E-value=3.5e-08 Score=86.53 Aligned_cols=249 Identities=10% Similarity=0.020 Sum_probs=158.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCCh
Q 041882 83 IYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRV 162 (491)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 162 (491)
++-..-.|++..+..-. .+...........-+.+++...|++... ....|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 45555678887777632 3222122334444556777777776632 11234443444443333 222
Q ss_pred hhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 041882 163 DDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREV-PPTVVTYNSLIGFLCRTGEMGKAKGLFED 241 (491)
Q Consensus 163 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 241 (491)
++..|+++...+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+++.|.+.+++
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677777776654 45566666777888888999999999888766653 23667777888888899999999999988
Q ss_pred HHHcCCCC-----CHHHHHHHHHHH--Hh--cCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 242 MIKKGTYP-----NAVTYALLMEGL--CF--KGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEM 312 (491)
Q Consensus 242 ~~~~~~~~-----~~~~~~~ll~~~--~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 312 (491)
|.+. .| +..+...++.++ .. .+++.+|..+|+++... .|+..+...++.++.+.|++++|++.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8775 44 245555566553 22 33888899999888665 454333344555788889999999988876
Q ss_pred HHcC-----C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 041882 313 KKRQ-----Y----KPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAA 357 (491)
Q Consensus 313 ~~~~-----~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 357 (491)
.+.. . .-++.++..+|......|+ +|.++++++.+. .|+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence 5431 0 2256666455555555676 788888888875 45443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.6e-09 Score=107.13 Aligned_cols=174 Identities=9% Similarity=-0.094 Sum_probs=133.9
Q ss_pred HhcCChhHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHh
Q 041882 87 ARARDFDAVETVLGYIQ--------DFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVD 158 (491)
Q Consensus 87 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 158 (491)
...|++++|.+.++... +.. +.+...+..+...+...|++++|+..|++..+.+. .+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 67888899999888887 443 55677888888888889999999999988877653 377888888888889
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 041882 159 NDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGL 238 (491)
Q Consensus 159 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 238 (491)
.|++++|+..|++..+... -+...+..+..++.+.|++++ ++.|++..+.+.. +...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999998887642 256677888888888999998 8889888876543 677888888899999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 041882 239 FEDMIKKGTYPNAVTYALLMEGLCFKGE 266 (491)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 266 (491)
|++..+.... +...+..+..++...++
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 9888765322 35666667777665554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-08 Score=78.48 Aligned_cols=129 Identities=15% Similarity=0.115 Sum_probs=86.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLR 368 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 368 (491)
+..+...+...|++++|..+++.+.+.+.. +...+..+...+...|++++|...++++...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 445566666677777777777776665433 55666666777777777777777777766543 3455566666777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 369 VEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777777777777776643 234566667777777777777777777777653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.7e-07 Score=81.80 Aligned_cols=134 Identities=7% Similarity=-0.077 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCcCHHHHHHHHHHH----HhC---CChh
Q 041882 93 DAVETVLGYIQDFNIRCKETLFISLIQHYGKAH--LVDKAIEVFNRMTSFDCVRTLQSFNSLLDIL----VDN---DRVD 163 (491)
Q Consensus 93 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~---~~~~ 163 (491)
++|+++++.++..+ |-+..+|+.-...+...+ ++++++..++.+...+++ +..+|+.-..++ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45666666666655 445555665555555555 666666666666554422 444554444433 333 4445
Q ss_pred hHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 041882 164 DAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWE--EASRVFDEMLEREVPPTVVTYNSLIGFLCRTG 230 (491)
Q Consensus 164 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 230 (491)
+++.+++.+.+... -+..+|+.-.-++.+.|.++ ++++.++.+.+.+.. |...|+.....+...+
T Consensus 128 ~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 128 REFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSG
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 55555555544331 14444444444444444444 444444444444333 4444444444443333
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-08 Score=88.88 Aligned_cols=100 Identities=11% Similarity=0.012 Sum_probs=55.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--cCHHHH
Q 041882 75 SYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCK---ETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCV--RTLQSF 149 (491)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~ 149 (491)
+...+-.+...+.+.|++++|.+.|+.+.+.. +.+ ...+..+..++.+.|++++|+..|++.....+. ....++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44455555556666666666666666666543 223 455556666666666666666666666553211 113445
Q ss_pred HHHHHHHHh--------CCChhhHHHHHHHHHHC
Q 041882 150 NSLLDILVD--------NDRVDDAKRMFDDADKM 175 (491)
Q Consensus 150 ~~ll~~~~~--------~~~~~~a~~~~~~~~~~ 175 (491)
..+..++.. .|++++|+..|+++.+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 555555555 56666666666665554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-07 Score=81.84 Aligned_cols=228 Identities=11% Similarity=0.011 Sum_probs=166.4
Q ss_pred hHHHhhhcCCh-HHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcC--ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH--
Q 041882 47 FVNDLKEIRDP-DEALSLFHRHHQMGSKHSYPSYASLIYKLARAR--DFDAVETVLGYIQDFNIRCKETLFISLIQHY-- 121 (491)
Q Consensus 47 ~~~~l~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-- 121 (491)
.+..+.+.|.. ++|+..++.++..+ +.+..+|+.-...+...+ +++++++.++.+...+ +-+..+|+.-...+
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHH
Confidence 44444555544 68999999998865 556667888888888888 9999999999999887 56677777666665
Q ss_pred --Hhc---CCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChh--hHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 041882 122 --GKA---HLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVD--DAKRMFDDADKMGFRPNLISFNVMIKGRLKK 194 (491)
Q Consensus 122 --~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 194 (491)
... +++++++.+++++.+.+.. +..+|+.-.-++...|.++ ++++.++++.+.... |...|+.....+...
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSS
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 555 7899999999999887644 8889999888888889888 999999999987643 777887776666666
Q ss_pred CC------hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcC
Q 041882 195 GE------WEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGK-AKGLFEDMIKKG--TYPNAVTYALLMEGLCFKG 265 (491)
Q Consensus 195 ~~------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~ 265 (491)
+. ++++++.++.+....+. |...|+-+...+.+.|.... +..+.+++.+.+ -..+...+..+...|.+.|
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred cccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 65 67777777777766544 67777777777777766433 444555554432 1235566666667777667
Q ss_pred CHhHHHHHHHHHHH
Q 041882 266 EYNEAKKMMFDMAY 279 (491)
Q Consensus 266 ~~~~a~~~~~~~~~ 279 (491)
+.++|.++++.+.+
T Consensus 273 ~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 273 KYNESRTVYDLLKS 286 (306)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 77777777776654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-08 Score=88.84 Aligned_cols=93 Identities=13% Similarity=0.046 Sum_probs=49.5
Q ss_pred hHHHhhhcCChHHHHHHHHHhhhCCCCCC---HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHH
Q 041882 47 FVNDLKEIRDPDEALSLFHRHHQMGSKHS---YPSYASLIYKLARARDFDAVETVLGYIQDFNI--RCKETLFISLIQHY 121 (491)
Q Consensus 47 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~ 121 (491)
....+...|++++|+..|+.+.+.. +.+ ..++..+..++.+.|++++|...|+.+.+... +.....+..+..++
T Consensus 21 ~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~ 99 (261)
T 3qky_A 21 RAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCY 99 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHH
Confidence 3344455566666666666655532 222 44555555566666666666666666555421 11134455555555
Q ss_pred Hh--------cCCHHHHHHHHHHhhhC
Q 041882 122 GK--------AHLVDKAIEVFNRMTSF 140 (491)
Q Consensus 122 ~~--------~~~~~~a~~~~~~~~~~ 140 (491)
.. .|++++|+..|+++...
T Consensus 100 ~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 100 YKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHhcccccccchhHHHHHHHHHHHHHH
Confidence 55 56666666666665543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.04 E-value=1.9e-07 Score=89.38 Aligned_cols=203 Identities=12% Similarity=0.045 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 233 GKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEM 312 (491)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 312 (491)
+.+..+|++++... +.+...|...+.-+...|+.+.|..++++.... |....... .|+...+.++. ++.+
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l 265 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHH
Confidence 45667888877753 335777777777778888888888888888877 33322211 22222221221 2222
Q ss_pred HHcC------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Q 041882 313 KKRQ------------YKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLR-VEDFEGSLKVL 379 (491)
Q Consensus 313 ~~~~------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~ 379 (491)
...- .......|...+....+.++.+.|..+|++. ... ..+...|......-.. .++.+.|..+|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 2210 0011245666677666778899999999988 321 2344455432222222 33689999999
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHh
Q 041882 380 NAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMR 453 (491)
Q Consensus 380 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~ 453 (491)
+..++.. +.+...+...++...+.|+.+.|..+|+++.+ ....|...+.-=...|+...+-+.++++.
T Consensus 344 e~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 344 SSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9888752 22345566677777888999999999998732 46778887764445565444444455544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.8e-08 Score=84.99 Aligned_cols=136 Identities=10% Similarity=-0.035 Sum_probs=65.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 041882 292 LMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVED 371 (491)
Q Consensus 292 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 371 (491)
+..++.+.|++++|...|++..+..+. +...+..+..++...|++++|...|++..+.. +.+..++..+...+...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 445555555566666655555554433 45555555555555666666666666555532 3344455555554443332
Q ss_pred --HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041882 372 --FEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLV 433 (491)
Q Consensus 372 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 433 (491)
.+.+...++.... ..|....+.....++...|++++|...|++..+ +.|+......+.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 2233334433322 112222233334444455666666666666654 345544444333
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.1e-08 Score=84.56 Aligned_cols=172 Identities=13% Similarity=0.098 Sum_probs=119.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH----------------HHHHHHhcCCHhHHHHHHHHHHH
Q 041882 216 VVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYAL----------------LMEGLCFKGEYNEAKKMMFDMAY 279 (491)
Q Consensus 216 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~ 279 (491)
...+......+...|++++|+..|++..+.... +...+.. +..++...|++++|...++...+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455566777889999999999988876322 3455666 77788888888888888888887
Q ss_pred cCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHH
Q 041882 280 RGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDR--AAEAYKVLTEMQIGGCKPNAA 357 (491)
Q Consensus 280 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 357 (491)
.. +.+...+..+..++...|++++|...|+++.+..+. +...|..+..+|...|+ .+.+...++... .|+..
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 156 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKM 156 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCch
Confidence 74 456677888888888888888888888888887655 67788888877765543 344555555543 33333
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 041882 358 --TYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSC 396 (491)
Q Consensus 358 --~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 396 (491)
.+.....++...|++++|...|+++++. .|+......
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~ 195 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 3334455666678888888888888874 466544333
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2.7e-08 Score=76.87 Aligned_cols=126 Identities=15% Similarity=0.133 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHh
Q 041882 219 YNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGK 298 (491)
Q Consensus 219 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (491)
|..+...+...|++++|..+++++.+.... +...+..+...+...|++++|...++.+...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 444455555555555555555555443221 34444444444455555555555555444432 2223333344444444
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041882 299 RGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEM 347 (491)
Q Consensus 299 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 347 (491)
.|++++|...++.+.+.... +...+..+...+...|++++|...++++
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 44444444444444433221 3333444444444444444444444443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.6e-08 Score=81.67 Aligned_cols=178 Identities=13% Similarity=-0.008 Sum_probs=124.5
Q ss_pred HHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----CHHHHHHH
Q 041882 58 DEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAH----LVDKAIEV 133 (491)
Q Consensus 58 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~ 133 (491)
.+|++.|++..+.| ++.++..+...+...+++++|.+.|+...+.+ ++..+..|...|.. + ++++|++.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35677777777654 56677778888888888888888888887765 56667777777776 5 78888888
Q ss_pred HHHhhhCCCCcCHHHHHHHHHHHHh----CCChhhHHHHHHHHHHCCCC-CCHHhHHHHHHHHHh----cCChHHHHHHH
Q 041882 134 FNRMTSFDCVRTLQSFNSLLDILVD----NDRVDDAKRMFDDADKMGFR-PNLISFNVMIKGRLK----KGEWEEASRVF 204 (491)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-p~~~~~~~ll~~~~~----~~~~~~a~~~~ 204 (491)
|++..+.+ +..++..|...|.. .+++++|+.+|++..+.|.. .+...+..|...|.. .+++++|...|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 88877653 66677777777776 67788888888877766421 015666667777776 66778888888
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhc-C-----ChhHHHHHHHHHHHcCC
Q 041882 205 DEMLEREVPPTVVTYNSLIGFLCRT-G-----EMGKAKGLFEDMIKKGT 247 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~~ 247 (491)
++..+. ..+...+..|..+|... | ++++|..+|+...+.|.
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 777765 12444566666666543 2 67777777777776654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-08 Score=83.60 Aligned_cols=161 Identities=9% Similarity=0.046 Sum_probs=87.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHH-HH
Q 041882 79 YASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDI-LV 157 (491)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~ 157 (491)
+......+.+.|++++|...++...+.. |.+...+..+...+...|++++|+..|++..... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4444555666666666666666655544 4455666666666666666666666666665443 233222222111 11
Q ss_pred hCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCChhHHH
Q 041882 158 DNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPP-TVVTYNSLIGFLCRTGEMGKAK 236 (491)
Q Consensus 158 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~ 236 (491)
..+....++..+++..+.. +-+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1122234555666555542 1134555566666666666666666666666553321 2345666666666666666666
Q ss_pred HHHHHHH
Q 041882 237 GLFEDMI 243 (491)
Q Consensus 237 ~~~~~~~ 243 (491)
..|++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.99 E-value=9.5e-09 Score=103.06 Aligned_cols=173 Identities=12% Similarity=0.011 Sum_probs=122.3
Q ss_pred HhcCChHHHHHHHHHHH--------hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 041882 192 LKKGEWEEASRVFDEML--------EREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCF 263 (491)
Q Consensus 192 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 263 (491)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|+..|+++.+.... +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 56778888888888877 322 335667777778888888888888888887775333 66777777778888
Q ss_pred cCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041882 264 KGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKV 343 (491)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 343 (491)
.|++++|...|++..+.. +.+...+..+..++.+.|++++ ...|+++.+.++. +...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888877764 3455667777777888888888 8888887776554 667777788888888888888888
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 041882 344 LTEMQIGGCKPN-AATYRMMVDGFLRVED 371 (491)
Q Consensus 344 ~~~~~~~~~~~~-~~~~~~li~~~~~~~~ 371 (491)
|++..+. .|+ ...+..+..++...++
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 8877653 444 3455556566554443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-08 Score=89.00 Aligned_cols=164 Identities=11% Similarity=0.025 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHH-H
Q 041882 110 KETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVM-I 188 (491)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-l 188 (491)
+...+..+...+...|++++|+..|++...... .+...+..+..++...|++++|...++++... .|+....... .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 334444455555555555555555555544432 14455555555555555555555555554433 2332222111 1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCH
Q 041882 189 KGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYP-NAVTYALLMEGLCFKGEY 267 (491)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~ 267 (491)
..+...++.+.|...+++..+.... +...+..+...+...|++++|+..|+++.+..... +...+..+...+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 1233444455555555555544322 44555555555555555555555555555542221 134455555555555555
Q ss_pred hHHHHHHHHH
Q 041882 268 NEAKKMMFDM 277 (491)
Q Consensus 268 ~~a~~~~~~~ 277 (491)
++|...+++.
T Consensus 272 ~~a~~~~r~a 281 (287)
T 3qou_A 272 DALASXYRRQ 281 (287)
T ss_dssp CHHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 5555555443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-06 Score=84.09 Aligned_cols=345 Identities=10% Similarity=-0.000 Sum_probs=216.9
Q ss_pred CChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHhc-CC-CCCHHHHHHHHHHHH----hcCCH
Q 041882 55 RDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARD-FDAVETVLGYIQDF-NI-RCKETLFISLIQHYG----KAHLV 127 (491)
Q Consensus 55 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~ 127 (491)
|+.+.|..+|++.... .|+...|..-+....+.++ .+....+|+..... |. +.+..+|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 8899999999999873 5799999998888777763 45677888877753 32 346788888877654 34678
Q ss_pred HHHHHHHHHhhhCCCCcCHHHHHHHHHHHHh-------------CCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 041882 128 DKAIEVFNRMTSFDCVRTLQSFNSLLDILVD-------------NDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKK 194 (491)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 194 (491)
+.+..+|++........-...|......-.. .+.+..|..+++.+...--..+...|...+..-...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 8899999999874211112233322221111 112233344444433210011334555544442221
Q ss_pred --CC-----hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 195 --GE-----WEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEY 267 (491)
Q Consensus 195 --~~-----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 267 (491)
+- .+.+..+|+++.... +.+...|...+..+.+.|++++|..+|++.... +.+...+. .|+...+.
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~ 258 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDE 258 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTC
T ss_pred CccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcch
Confidence 11 345677898888753 446888999999999999999999999999988 33332222 22222111
Q ss_pred hHHHHHHHHHHHcC---------CCC---ChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-c
Q 041882 268 NEAKKMMFDMAYRG---------CKP---QLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCK-E 334 (491)
Q Consensus 268 ~~a~~~~~~~~~~~---------~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~ 334 (491)
++. ++.+.+.- ..+ ....|...+....+.++.+.|..+|+.+ .. ...+...|...+..-.. .
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHC
Confidence 121 22222110 001 1234556666666788899999999999 32 22344555433322222 3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHH
Q 041882 335 DRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVL 414 (491)
Q Consensus 335 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 414 (491)
++.+.|..+|+...+.. +-++..+...++-....|+.+.|..+|+++. .....|...+..-...|+.+.+..++
T Consensus 334 ~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~ 407 (493)
T 2uy1_A 334 GSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELV 407 (493)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46999999999988753 3345555666777778899999999999972 35778888888888889999999998
Q ss_pred HHHHH
Q 041882 415 EEMEK 419 (491)
Q Consensus 415 ~~~~~ 419 (491)
+++.+
T Consensus 408 ~~~~~ 412 (493)
T 2uy1_A 408 DQKMD 412 (493)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88774
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.95 E-value=9.8e-09 Score=84.00 Aligned_cols=162 Identities=9% Similarity=0.015 Sum_probs=127.7
Q ss_pred CcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HH
Q 041882 44 PIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQH-YG 122 (491)
Q Consensus 44 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 122 (491)
.......+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.... + +...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY-Q-DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C-ChHHHHHHHHHHHH
Confidence 3456667888999999999999988754 5677889999999999999999999999988765 3 55544433222 22
Q ss_pred hcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCChHHHH
Q 041882 123 KAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRP-NLISFNVMIKGRLKKGEWEEAS 201 (491)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~ 201 (491)
..+....|+..|++.....+ .+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 32334457888998887653 368899999999999999999999999998875332 3567888999999999999999
Q ss_pred HHHHHHHh
Q 041882 202 RVFDEMLE 209 (491)
Q Consensus 202 ~~~~~~~~ 209 (491)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=7.7e-09 Score=82.03 Aligned_cols=141 Identities=12% Similarity=0.091 Sum_probs=91.1
Q ss_pred hhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 51 LKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKA 130 (491)
Q Consensus 51 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 130 (491)
+...|+.++|+..++...... +.+...+..+...|.+.|+++.|.+.|+...+.. +.+..++..+..++...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 345567777777777666532 2233455566777777777777777777777765 55677777777777777777777
Q ss_pred HHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHH-HHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 041882 131 IEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRM-FDDADKMGFRPNLISFNVMIKGRLKKG 195 (491)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~p~~~~~~~ll~~~~~~~ 195 (491)
+..|++..+.++. +..+|..+..++.+.|+++++... +++..+.. +-+...|......+...|
T Consensus 85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 7777777665422 566777777777777777665544 46665542 124455555555555444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-07 Score=80.01 Aligned_cols=176 Identities=9% Similarity=-0.025 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCC----ChhhHHHHH
Q 041882 94 AVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDND----RVDDAKRMF 169 (491)
Q Consensus 94 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~ 169 (491)
+|.+.|+...+.+ ++..+..+...|...+++++|++.|++..+.+ +..++..|...|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3556666666654 56677777777777788888888888877654 56677777777766 5 777888888
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHh----cCChhHHHHHHH
Q 041882 170 DDADKMGFRPNLISFNVMIKGRLK----KGEWEEASRVFDEMLEREVP-PTVVTYNSLIGFLCR----TGEMGKAKGLFE 240 (491)
Q Consensus 170 ~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~~ 240 (491)
++..+.| +...+..|...|.. .+++++|.++|++..+.|.. .+...+..|...|.. .+++++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776654 45566666666665 67777777777777766421 015666777777776 667777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc-C-----CHhHHHHHHHHHHHcC
Q 041882 241 DMIKKGTYPNAVTYALLMEGLCFK-G-----EYNEAKKMMFDMAYRG 281 (491)
Q Consensus 241 ~~~~~~~~~~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~ 281 (491)
+..+.+ .+...+..+...|... | +.++|..+|+...+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 776651 1333455555555432 2 6777777777766665
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=4.4e-09 Score=83.44 Aligned_cols=141 Identities=11% Similarity=0.002 Sum_probs=68.0
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHH
Q 041882 121 YGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEA 200 (491)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 200 (491)
+...|++++|+..+++..... +.+...+..+...|...|++++|++.|++.++.. +-+..+|..+..++...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 334455555555555544322 1123334445555555555555555555555442 11344555555555555555555
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 041882 201 SRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGL-FEDMIKKGTYPNAVTYALLMEGLCFKG 265 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~ll~~~~~~~ 265 (491)
...|+...+.... +...|..+...|.+.|++++|.+. +++..+.... ++.+|......+...|
T Consensus 85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 5555555554322 445555555555555555443332 3444443221 4444444444444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.4e-08 Score=97.23 Aligned_cols=155 Identities=10% Similarity=-0.015 Sum_probs=120.2
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041882 54 IRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEV 133 (491)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 133 (491)
.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+...+...|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988754 5567889999999999999999999999999886 66788999999999999999999999
Q ss_pred HHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc---CChHHHHHHHHHHHhC
Q 041882 134 FNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKK---GEWEEASRVFDEMLER 210 (491)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~ 210 (491)
|++..+... .+...+..+..++...|++++|.+.|++..+.. +.+...+..+..++... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999988653 378899999999999999999999999998764 23567888899999999 9999999999999886
Q ss_pred CC
Q 041882 211 EV 212 (491)
Q Consensus 211 ~~ 212 (491)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 53
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=4.4e-08 Score=87.13 Aligned_cols=165 Identities=12% Similarity=0.010 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH-HHHH
Q 041882 145 TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTY-NSLI 223 (491)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll 223 (491)
+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++.+.... |+.... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 44555666666666777777777777666543 1244556666666677777777777776665542 232222 2222
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCh
Q 041882 224 GFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKP-QLVNFGVLMSDLGKRGKI 302 (491)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~ 302 (491)
..+...++.++|...+++...... .+...+..+...+...|++++|...+..+.+..... +...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 234555666666666666666532 255666666666777777777777777666653111 144566666666666776
Q ss_pred HHHHHHHHHHH
Q 041882 303 EEAKSLLSEMK 313 (491)
Q Consensus 303 ~~a~~~~~~~~ 313 (491)
++|...|++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 66666666543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.8e-07 Score=79.81 Aligned_cols=66 Identities=12% Similarity=0.060 Sum_probs=44.5
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 041882 76 YPSYASLIYKLARARDFDAVETVLGYIQDFNIRC--KETLFISLIQHYGKAHLVDKAIEVFNRMTSFD 141 (491)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 141 (491)
...+..+...+.+.|++++|...|+.+.+..... ....+..+..++.+.|++++|+..|+++.+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 71 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 71 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 3455556666777788888888887777653211 13566677777777788888888777776654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.8e-07 Score=78.63 Aligned_cols=202 Identities=10% Similarity=0.042 Sum_probs=108.7
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHH
Q 041882 182 ISFNVMIKGRLKKGEWEEASRVFDEMLEREVP-P-TVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNA--VTYALL 257 (491)
Q Consensus 182 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 257 (491)
..+..+...+...|++++|...|+.+.+.... + ....+..+..+|.+.|++++|+..|+++.+....... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34445566677777777777777777764321 1 1245666777777777777777777777765332111 133333
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 258 MEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRA 337 (491)
Q Consensus 258 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 337 (491)
..++...+.. .+. .+..+...+...|+.++|...|+++.+..+. +...+.......
T Consensus 85 g~~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~------ 140 (225)
T 2yhc_A 85 GLTNMALDDS-----ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV------ 140 (225)
T ss_dssp HHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH------
T ss_pred HHHHHhhhhh-----hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH------
Confidence 3333332210 000 1112222333456677777777777765332 222222111100
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHcCCCHHHHHHH
Q 041882 338 AEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPR----LETFSCLLVGLLKGGKVDDACFV 413 (491)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~ 413 (491)
.+...+. .....+...+...|++++|...|+++++.. |+ ...+..+..++.+.|++++|.+.
T Consensus 141 ----~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~ 206 (225)
T 2yhc_A 141 ----FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKV 206 (225)
T ss_dssp ----HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHH
Confidence 0000000 011234566777888888888888887752 32 24567777888888888888888
Q ss_pred HHHHHHCC
Q 041882 414 LEEMEKRK 421 (491)
Q Consensus 414 ~~~~~~~~ 421 (491)
++.+...+
T Consensus 207 ~~~l~~~~ 214 (225)
T 2yhc_A 207 AKIIAANS 214 (225)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhhC
Confidence 88777653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=6e-08 Score=95.49 Aligned_cols=155 Identities=9% Similarity=-0.033 Sum_probs=119.6
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHH
Q 041882 89 ARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRM 168 (491)
Q Consensus 89 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 168 (491)
.|++++|.+.++...+.. +.+...+..+...+...|++++|++.|++..+... .+..++..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988775 56788999999999999999999999999988763 3788999999999999999999999
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CChhHHHHHHHHHHHc
Q 041882 169 FDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRT---GEMGKAKGLFEDMIKK 245 (491)
Q Consensus 169 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~ 245 (491)
+++..+.. +.+...+..+..++.+.|++++|.+.|++..+.... +...+..+..++... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998864 235778889999999999999999999999886533 678889999999999 9999999999999886
Q ss_pred CC
Q 041882 246 GT 247 (491)
Q Consensus 246 ~~ 247 (491)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 54
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.2e-08 Score=87.13 Aligned_cols=185 Identities=11% Similarity=-0.011 Sum_probs=98.2
Q ss_pred HHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC---CCC--hhcHHHHHH
Q 041882 225 FLCRTGEMGKAKGLFEDMIKK----GTYP-NAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGC---KPQ--LVNFGVLMS 294 (491)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~ll~ 294 (491)
.|...|++++|...|.+..+. +... -..+|..+...|...|++++|...+++..+... .+. ..++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555544332 1000 022444555555555666666555555443210 111 234455556
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHH
Q 041882 295 DLGKRGKIEEAKSLLSEMKKRQYKP-----DVVTYNILINYLCKEDRAAEAYKVLTEMQIG----GCKPN-AATYRMMVD 364 (491)
Q Consensus 295 ~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~ 364 (491)
+|.. |++++|+..|++..+..... ...+++.+...|...|++++|+..|++..+. +..++ ...+..+..
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 6666 77777777776665431110 1346677777788888888888888877652 11111 124555566
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC-CC---HHhHHHHHHHHHcCCCHHHHHH
Q 041882 365 GFLRVEDFEGSLKVLNAMLTSRHC-PR---LETFSCLLVGLLKGGKVDDACF 412 (491)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~~g~~~~a~~ 412 (491)
++...|++++|...|++.+ .... ++ ......++.++ ..|+.+.+..
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 6667788888888888877 4211 11 12234444444 4666665555
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.6e-06 Score=74.73 Aligned_cols=174 Identities=9% Similarity=-0.033 Sum_probs=116.6
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhC-C-Chh
Q 041882 87 ARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAH-LVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDN-D-RVD 163 (491)
Q Consensus 87 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-~~~ 163 (491)
.+.+..++|+++++.+...+ +-+..+|+.--..+...| .+++++.+++.+...+.+ +..+|+.-..++... + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence 33445568999999998887 667788888777777777 588999999988887644 778888877777766 6 778
Q ss_pred hHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChH--------HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC----
Q 041882 164 DAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWE--------EASRVFDEMLEREVPPTVVTYNSLIGFLCRTGE---- 231 (491)
Q Consensus 164 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---- 231 (491)
+++++++.+.+... -|...|+.-.-.+.+.+.++ ++++.++++.+..+. |...|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence 88888888887642 26666666555555555555 666677776665544 66666666666666554
Q ss_pred ---hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 041882 232 ---MGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKG 265 (491)
Q Consensus 232 ---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 265 (491)
++++++.+++++..... |...|+-+-..+.+.|
T Consensus 221 ~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 45666666665554333 5555554444444433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=5e-06 Score=74.46 Aligned_cols=175 Identities=11% Similarity=0.028 Sum_probs=141.4
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-C-CHHH
Q 041882 53 EIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARAR-DFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA-H-LVDK 129 (491)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~ 129 (491)
..+..++|+++++.++..+ +.+..+|+.-...+...+ +++++++.++.+...+ +-+..+|+.....+.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 3456678999999999865 556677888888888888 5999999999999887 66888898888777776 7 8999
Q ss_pred HHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChh--------hHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC-----
Q 041882 130 AIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVD--------DAKRMFDDADKMGFRPNLISFNVMIKGRLKKGE----- 196 (491)
Q Consensus 130 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~----- 196 (491)
++++++++.+.+.. |..+|+.-.-++...|.++ ++++.++++.+.... |...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccch
Confidence 99999999988744 8889988777777766666 899999999987643 77888888877777776
Q ss_pred --hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 041882 197 --WEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEM 232 (491)
Q Consensus 197 --~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 232 (491)
++++++.++++...... |...|+-+-..+.+.|..
T Consensus 222 ~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCC
Confidence 68899999888887554 888888877777776654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-07 Score=85.24 Aligned_cols=227 Identities=12% Similarity=0.111 Sum_probs=130.7
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041882 54 IRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEV 133 (491)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 133 (491)
.|++++|.+++++..... +.+ + +...++++.|...|... ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 467778888887766422 111 0 11135666666665543 3455666777777777
Q ss_pred HHHhhhC----CCC-cCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCC--C-CCC--HHhHHHHHHHHHhcCChHHHHHH
Q 041882 134 FNRMTSF----DCV-RTLQSFNSLLDILVDNDRVDDAKRMFDDADKMG--F-RPN--LISFNVMIKGRLKKGEWEEASRV 203 (491)
Q Consensus 134 ~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~-~p~--~~~~~~ll~~~~~~~~~~~a~~~ 203 (491)
|.+.... +-. .-..+|+.+..+|...|++++|+..|++..+.- . .+. ..+++.+..+|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 6665432 100 013466777777777777777777777654431 0 111 3456666667766 777777777
Q ss_pred HHHHHhCCCC-----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHhHHHHH
Q 041882 204 FDEMLEREVP-----PTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK----GTYPN-AVTYALLMEGLCFKGEYNEAKKM 273 (491)
Q Consensus 204 ~~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~ 273 (491)
|++..+.... ....++..+...|...|++++|+..|++.... +..+. ...+..+..++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7776543110 01356677777788888888888888777653 11111 22455566666777888888888
Q ss_pred HHHHHHcCCCC-Ch---hcHHHHHHHHHhcCChHHHHHH
Q 041882 274 MFDMAYRGCKP-QL---VNFGVLMSDLGKRGKIEEAKSL 308 (491)
Q Consensus 274 ~~~~~~~~~~~-~~---~~~~~ll~~~~~~~~~~~a~~~ 308 (491)
|++.. ..... +. .....++.++ ..++.+.+..+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 87776 43111 11 1233444444 45666665553
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-06 Score=74.04 Aligned_cols=124 Identities=15% Similarity=-0.012 Sum_probs=65.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 041882 292 LMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVED 371 (491)
Q Consensus 292 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 371 (491)
+...+...|++++|...|++.. .|+...|..+...|...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 3344445555555555555442 2345555555555555555555555555555432 3344455555555555555
Q ss_pred HHHHHHHHHHHHhCCCC--------------C-CHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 372 FEGSLKVLNAMLTSRHC--------------P-RLETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 372 ~~~a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
+++|...|+++.+.... | ....+..+..+|...|++++|...|+++.+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 55555555555553210 0 1245555666666666666666666666644
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.4e-07 Score=77.00 Aligned_cols=125 Identities=10% Similarity=0.138 Sum_probs=102.1
Q ss_pred HHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCH
Q 041882 49 NDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQH-YGKAHLV 127 (491)
Q Consensus 49 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~ 127 (491)
..+...|++++|+..|+...... +.+...+..+...+...|+++.|...++...+.. +.+...+..+... +...|++
T Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 18 HQFASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CCCC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCc
Confidence 44677899999999999988754 5677889999999999999999999999988876 5577888888888 7788998
Q ss_pred --HHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCC
Q 041882 128 --DKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMG 176 (491)
Q Consensus 128 --~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 176 (491)
++|+..|++....+. .+...+..+..++...|++++|...|+++.+..
T Consensus 96 ~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999999887653 367888889999999999999999999988763
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.74 E-value=3.7e-06 Score=74.88 Aligned_cols=162 Identities=9% Similarity=-0.047 Sum_probs=86.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCC-CcCH----HHHHHHHHHHHhCCChhhHHHHHHHHHHCCCC-CC----HHhHHH
Q 041882 117 LIQHYGKAHLVDKAIEVFNRMTSFDC-VRTL----QSFNSLLDILVDNDRVDDAKRMFDDADKMGFR-PN----LISFNV 186 (491)
Q Consensus 117 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~ 186 (491)
.+..+...|++++|...+++...... .++. ..+..+...+...+++++|+..|++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35556666777777777776655321 1111 12233555555556667777777666653211 12 124566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC-----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHH
Q 041882 187 MIKGRLKKGEWEEASRVFDEMLER-----EVPP-TVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK----GTYPN-AVTYA 255 (491)
Q Consensus 187 ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~ 255 (491)
+..+|...|++++|...|+++.+. +..+ ...++..+...|.+.|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 666666666666666666665531 1111 1225556666666666666666666665532 11111 34555
Q ss_pred HHHHHHHhcCC-HhHHHHHHHHHH
Q 041882 256 LLMEGLCFKGE-YNEAKKMMFDMA 278 (491)
Q Consensus 256 ~ll~~~~~~~~-~~~a~~~~~~~~ 278 (491)
.+..++...|+ +++|...+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 55566666663 466666555544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.71 E-value=3.3e-06 Score=75.23 Aligned_cols=161 Identities=14% Similarity=0.076 Sum_probs=86.4
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCC-CCCHH----hHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----hhhHHH
Q 041882 152 LLDILVDNDRVDDAKRMFDDADKMGF-RPNLI----SFNVMIKGRLKKGEWEEASRVFDEMLEREVP-PT----VVTYNS 221 (491)
Q Consensus 152 ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 221 (491)
.+..+...|++++|..++++..+... .|+.. .+..+...+...+++++|...|+...+.... .+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35666777777777777777765421 12211 2223444555566777777777777663222 12 224666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc-----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCCC-hhcHH
Q 041882 222 LIGFLCRTGEMGKAKGLFEDMIKK-----GTYP-NAVTYALLMEGLCFKGEYNEAKKMMFDMAYR----GCKPQ-LVNFG 290 (491)
Q Consensus 222 ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~ 290 (491)
+..+|...|++++|+..|+++.+. +..+ ...++..+...|...|++++|...+++..+. +..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 777777777777777777776631 1111 1224555556666666666666666555432 11111 23444
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHH
Q 041882 291 VLMSDLGKRGK-IEEAKSLLSEM 312 (491)
Q Consensus 291 ~ll~~~~~~~~-~~~a~~~~~~~ 312 (491)
.+..++.+.|+ +++|...+++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHH
Confidence 45555555552 35555555444
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-06 Score=72.90 Aligned_cols=125 Identities=13% Similarity=-0.018 Sum_probs=71.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 041882 256 LLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKED 335 (491)
Q Consensus 256 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 335 (491)
.+...+...|++++|...++... .++...+..+..++...|++++|...++...+.... +...|..+..+|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcc
Confidence 33444455555555555555442 334455555555555666666666666655554332 4555666666666666
Q ss_pred CHHHHHHHHHHHHhCC--------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 336 RAAEAYKVLTEMQIGG--------------CKP-NAATYRMMVDGFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 336 ~~~~a~~~~~~~~~~~--------------~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 385 (491)
++++|...|++..+.. ..| ....+..+..++...|++++|...|+++.+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 6666666666665532 011 1245666666777777777777777777764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.1e-06 Score=75.38 Aligned_cols=165 Identities=10% Similarity=-0.021 Sum_probs=102.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCh-----hcHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CC--HHH
Q 041882 254 YALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQL-----VNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYK---PD--VVT 323 (491)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~ 323 (491)
+...+..+...|++++|.+.+....+....... ..+..+...+...|++++|...+++..+.... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334455556666666666666655554211110 11223445556667777777777776643211 11 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-CHH
Q 041882 324 YNILINYLCKEDRAAEAYKVLTEMQIG-GCKPN-----AATYRMMVDGFLRVEDFEGSLKVLNAMLTSR----HCP-RLE 392 (491)
Q Consensus 324 ~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~ 392 (491)
|+.+...|...|++++|...+++..+. ...|+ ..++..+...|...|++++|...+++.++.. ... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 777788888888888888888877621 00111 1467777778888888888888888776531 111 156
Q ss_pred hHHHHHHHHHcCCCHHHH-HHHHHHHH
Q 041882 393 TFSCLLVGLLKGGKVDDA-CFVLEEME 418 (491)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a-~~~~~~~~ 418 (491)
+|..+..+|.+.|++++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 677788888888888888 66677655
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.66 E-value=8.7e-07 Score=67.58 Aligned_cols=96 Identities=11% Similarity=0.108 Sum_probs=60.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILV 157 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 157 (491)
.+......+.+.|++++|.+.|+...+.. +.+..++..+..++.+.|++++|+..|++..+.+. .+..+|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHH
Confidence 44555666666666666666666666654 45566666666666666666666666666655542 25566666666666
Q ss_pred hCCChhhHHHHHHHHHHC
Q 041882 158 DNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 158 ~~~~~~~a~~~~~~~~~~ 175 (491)
..|++++|++.|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 666666666666666654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.9e-06 Score=69.19 Aligned_cols=94 Identities=13% Similarity=0.004 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHh
Q 041882 219 YNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGK 298 (491)
Q Consensus 219 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (491)
+..+...+...|++++|...|++..+.... +..++..+..++...|++++|...++...+.. +.+...+..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 333444444444444444444444433211 33344444444444444444444444444332 2223333333444444
Q ss_pred cCChHHHHHHHHHHHH
Q 041882 299 RGKIEEAKSLLSEMKK 314 (491)
Q Consensus 299 ~~~~~~a~~~~~~~~~ 314 (491)
.|++++|...++++.+
T Consensus 94 ~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 94 LGKFRAALRDYETVVK 109 (166)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 4444444444444433
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.64 E-value=2e-06 Score=69.03 Aligned_cols=127 Identities=12% Similarity=-0.001 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLR 368 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 368 (491)
+..+...+...|++++|...|+...+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 344445555556666666666555554332 45555566666666666666666666655542 3345555566666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHH--HHHHHHHcCCCHHHHHHHHHHHH
Q 041882 369 VEDFEGSLKVLNAMLTSRHCPRLETFS--CLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
.|++++|...++++.+.. +.+...+. ..+..+...|++++|...++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 666666666666666542 12233332 22233555666666666666554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-06 Score=66.24 Aligned_cols=20 Identities=10% Similarity=0.257 Sum_probs=7.6
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 041882 224 GFLCRTGEMGKAKGLFEDMI 243 (491)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~ 243 (491)
..|.+.|++++|++.|++.+
T Consensus 21 ~~~~~~g~~~~A~~~~~~al 40 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAV 40 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 33333333333333333333
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-05 Score=71.86 Aligned_cols=167 Identities=11% Similarity=0.040 Sum_probs=110.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC---CC--hh
Q 041882 218 TYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNA-----VTYALLMEGLCFKGEYNEAKKMMFDMAYRGCK---PQ--LV 287 (491)
Q Consensus 218 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 287 (491)
.+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|...+....+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566667777777777777776654322111 12333445566777888888888777653211 11 33
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHH---cCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CH
Q 041882 288 NFGVLMSDLGKRGKIEEAKSLLSEMKK---RQYK-P--DVVTYNILINYLCKEDRAAEAYKVLTEMQIG----GCKP-NA 356 (491)
Q Consensus 288 ~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~-~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 356 (491)
+++.+...|...|++++|...++++.+ .... + ...++..+...|...|++++|...+++..+. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 677778888888888888888887762 2111 1 1257788888888999999999988887643 1111 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 041882 357 ATYRMMVDGFLRVEDFEGS-LKVLNAMLT 384 (491)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a-~~~~~~~~~ 384 (491)
.+|..+..++...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6778888888899999998 777777654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-06 Score=74.99 Aligned_cols=190 Identities=12% Similarity=-0.044 Sum_probs=134.6
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCHHhHHHH-------HHHHHhcCChhHHHHHHHHHHhc------------CC------
Q 041882 53 EIRDPDEALSLFHRHHQMGSKHSYPSYASL-------IYKLARARDFDAVETVLGYIQDF------------NI------ 107 (491)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~------------~~------ 107 (491)
..+++..|++.|.++.+.. +-....|..+ ...+.+.++..++...+..-... |.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4789999999999999865 5567778777 46666665556655555554441 10
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC--HHh
Q 041882 108 --RCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPN--LIS 183 (491)
Q Consensus 108 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~ 183 (491)
.........+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 0013445567778888999999999999887765 333366666778888999999999998554431 111 235
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041882 184 FNVMIKGRLKKGEWEEASRVFDEMLEREVPPT--VVTYNSLIGFLCRTGEMGKAKGLFEDMIKKG 246 (491)
Q Consensus 184 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 246 (491)
+..+-.++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 66777888899999999999998875433243 3456677778888999999999999988763
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.61 E-value=3e-07 Score=81.37 Aligned_cols=193 Identities=12% Similarity=0.071 Sum_probs=117.3
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHH
Q 041882 75 SYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLD 154 (491)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 154 (491)
+...+..+...+...|++++|...++...+.. +.+...+..+...+.+.|++++|+..+++....+. .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 45667777788888888888888888888765 55778888888888888888888888888877653 36778888888
Q ss_pred HHHhCCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 041882 155 ILVDNDRVDDAKRMFDDADKMGFRPNL-ISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMG 233 (491)
Q Consensus 155 ~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 233 (491)
++...|++++|...|++..+.. |+. ..+...+....+. ..+.. +........+.+......+.. + ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 8888888888888888776542 211 0111111111111 11111 112222233334433333322 2 257777
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhc-CCHhHHHHHHHHHHH
Q 041882 234 KAKGLFEDMIKKGTYPNAV-TYALLMEGLCFK-GEYNEAKKMMFDMAY 279 (491)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~-~~~~~a~~~~~~~~~ 279 (491)
+|++.++...+. .|+.. ....+...+.+. +.+++|.++|....+
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777776654 33332 223333333333 556677777776654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.4e-07 Score=75.28 Aligned_cols=97 Identities=11% Similarity=0.097 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHC----CCCC--CHHhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CCh
Q 041882 148 SFNSLLDILVDNDRVDDAKRMFDDADKM----GFRP--NLISFNVMIKGRLKKGEWEEASRVFDEMLER----EVP-PTV 216 (491)
Q Consensus 148 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~ 216 (491)
++..+...+...|++++|...+++..+. +-.+ ....+..+...+...|++++|...+++..+. +.. .-.
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444444444445555444444443322 1011 1223444444555555555555555544321 100 011
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041882 217 VTYNSLIGFLCRTGEMGKAKGLFEDMIK 244 (491)
Q Consensus 217 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 244 (491)
.++..+...+...|++++|...+++..+
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2234555555566666666665555543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.59 E-value=3.3e-06 Score=66.47 Aligned_cols=95 Identities=11% Similarity=-0.088 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLL 402 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 402 (491)
.+..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|+..|+++++.. +.+...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 34444444555555555555555554432 3334445555555555555555555555555432 123444455555555
Q ss_pred cCCCHHHHHHHHHHHHH
Q 041882 403 KGGKVDDACFVLEEMEK 419 (491)
Q Consensus 403 ~~g~~~~a~~~~~~~~~ 419 (491)
..|++++|...|++..+
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.58 E-value=4.7e-07 Score=80.13 Aligned_cols=192 Identities=9% Similarity=0.023 Sum_probs=91.3
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041882 181 LISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEG 260 (491)
Q Consensus 181 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 260 (491)
...+..+...+.+.|++++|...|+...+.... +...|..+..+|...|++++|+..+++..+... .+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 344445555555666666666666655554222 455556666666666666666666666655422 245555556666
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 041882 261 LCFKGEYNEAKKMMFDMAYRGCKPQ-LVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAE 339 (491)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 339 (491)
+...|++++|...|....+.. |+ ...+...+....+. ..+. -+..........+......+... ..|+.++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 666666666666666555432 11 00111111111110 1111 11112222233333333333222 2466777
Q ss_pred HHHHHHHHHhCCCCCCHHHHH-HHHHHHHhc-CCHHHHHHHHHHHHh
Q 041882 340 AYKVLTEMQIGGCKPNAATYR-MMVDGFLRV-EDFEGSLKVLNAMLT 384 (491)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~-~~~~~a~~~~~~~~~ 384 (491)
|++.+++..+. .|+..... .+...+... +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77776666543 44443322 222223333 456677777776654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.1e-07 Score=74.94 Aligned_cols=155 Identities=15% Similarity=0.081 Sum_probs=76.8
Q ss_pred cCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC----CCC-CCHHhHHHHHHHHHhcCChH
Q 041882 124 AHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM----GFR-PNLISFNVMIKGRLKKGEWE 198 (491)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-p~~~~~~~ll~~~~~~~~~~ 198 (491)
.|++++|.+.++.+.. .......++..+...+...|++++|...+++.... +.. .....+..+...+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4555555553333222 11123445555555555555555555555554431 111 12344555566666666666
Q ss_pred HHHHHHHHHHhC----CCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCH
Q 041882 199 EASRVFDEMLER----EVP--PTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK----GTYP-NAVTYALLMEGLCFKGEY 267 (491)
Q Consensus 199 ~a~~~~~~~~~~----~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~ 267 (491)
+|.+.+++..+. +.. .....+..+...+...|++++|...+++.... +... -..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666666655432 111 12334555666666666666666666665532 1100 112345555666666666
Q ss_pred hHHHHHHHHHHH
Q 041882 268 NEAKKMMFDMAY 279 (491)
Q Consensus 268 ~~a~~~~~~~~~ 279 (491)
++|...+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.4e-06 Score=73.99 Aligned_cols=188 Identities=7% Similarity=-0.046 Sum_probs=105.5
Q ss_pred hcCCHHHHHHHHHHhhhCCCCcCHHHHHHH-------HHHHHhCCChhhHHHHHHHHHHCCCCCCH--------------
Q 041882 123 KAHLVDKAIEVFNRMTSFDCVRTLQSFNSL-------LDILVDNDRVDDAKRMFDDADKMGFRPNL-------------- 181 (491)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~p~~-------------- 181 (491)
..++...|.+.|.++...++. ....|..+ ..++...++..+++..+..-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 467777777777777766532 56677666 3445444445555554444332 22211
Q ss_pred --------HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--H
Q 041882 182 --------ISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPN--A 251 (491)
Q Consensus 182 --------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 251 (491)
.....+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 122334556667777777777777666543 222244555556677777777777776443321 110 2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC--hhcHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 041882 252 VTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQ--LVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQ 316 (491)
Q Consensus 252 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 316 (491)
..+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...+
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2455566666677777777777776654322132 2233444555666666777777776666653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.58 E-value=3.2e-06 Score=63.89 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=7.9
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 041882 222 LIGFLCRTGEMGKAKGLFEDM 242 (491)
Q Consensus 222 ll~~~~~~~~~~~a~~~~~~~ 242 (491)
+...+...|++++|.+.++++
T Consensus 15 ~~~~~~~~~~~~~A~~~~~~~ 35 (125)
T 1na0_A 15 LGNAYYKQGDYDEAIEYYQKA 35 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333333
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.9e-06 Score=66.17 Aligned_cols=95 Identities=9% Similarity=0.021 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILV 157 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 157 (491)
.+..+...+...|+++.|.+.++...+.. +.+..++..+...+...|++++|+..+++...... .+...+..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHHH
Confidence 34444444444444444444444444432 22344444444444444444444444444433321 13344444444444
Q ss_pred hCCChhhHHHHHHHHHH
Q 041882 158 DNDRVDDAKRMFDDADK 174 (491)
Q Consensus 158 ~~~~~~~a~~~~~~~~~ 174 (491)
..|++++|.+.|++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 44444444444444433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=0.00011 Score=65.54 Aligned_cols=166 Identities=10% Similarity=0.017 Sum_probs=96.6
Q ss_pred HhcCChh-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhCCCCcCHHHHHHHHHH
Q 041882 87 ARARDFD-AVETVLGYIQDFNIRCKETLFISLIQHYGKAHL----------VDKAIEVFNRMTSFDCVRTLQSFNSLLDI 155 (491)
Q Consensus 87 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 155 (491)
.+.|.++ +|+++++.+...+ |-+..+|+.--..+...+. +++++.+++.+...+++ +..+|+.-.-+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3455554 5677777777665 4455555544333333222 56667777776665533 66677666666
Q ss_pred HHhCC--ChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---
Q 041882 156 LVDND--RVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGE-WEEASRVFDEMLEREVPPTVVTYNSLIGFLCRT--- 229 (491)
Q Consensus 156 ~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--- 229 (491)
+...+ .+++++.+++.+.+... -|...|+.-.-.+...|. ++++++.++.+.+..+. |...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 66666 36677777777766542 255666665555566666 46777777777666544 666666655555444
Q ss_pred -----------CChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 041882 230 -----------GEMGKAKGLFEDMIKKGTYPNAVTYALL 257 (491)
Q Consensus 230 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l 257 (491)
+.++++++.++..+...+. |...|+-+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~ 233 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYH 233 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 3355666666666655333 55555433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=8e-05 Score=66.37 Aligned_cols=193 Identities=8% Similarity=-0.050 Sum_probs=142.9
Q ss_pred HHHhhhcCChH-HHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHhcCCCCCHHHHHH
Q 041882 48 VNDLKEIRDPD-EALSLFHRHHQMGSKHSYPSYASLIYKLARARD----------FDAVETVLGYIQDFNIRCKETLFIS 116 (491)
Q Consensus 48 ~~~l~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ 116 (491)
+....+.|..+ +|+.+++.+...+ +.+..+|+.--..+...+. ++++...++.+...+ +-+..+|+.
T Consensus 36 ~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~h 113 (331)
T 3dss_A 36 VFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHH 113 (331)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 33344556555 8999999999865 4455566655544444433 678999999998877 668889998
Q ss_pred HHHHHHhcC--CHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCC-hhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 041882 117 LIQHYGKAH--LVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDR-VDDAKRMFDDADKMGFRPNLISFNVMIKGRLK 193 (491)
Q Consensus 117 l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 193 (491)
-...+...+ .+++++.+++++.+.+.. |..+|+.-.-++...|. ++++++.++.+.+..+. |...|+.....+.+
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 888888888 489999999999988744 88999998888888888 58999999999987643 77778777666655
Q ss_pred c--------------CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----------CChhHHHHHHHHHHHc
Q 041882 194 K--------------GEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRT-----------GEMGKAKGLFEDMIKK 245 (491)
Q Consensus 194 ~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~ 245 (491)
. +.++++++.+.......+. |...|+-+-..+.+. +.++++++.++++.+.
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 5 4578899999988876544 777787555555444 3456677777777665
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=2.4e-06 Score=65.24 Aligned_cols=95 Identities=14% Similarity=0.146 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILV 157 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 157 (491)
.+..+...+...|+++.|.+.++...... +.+...+..+...+...|++++|+..+++..... +.+...+..+..++.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 34444444444555555555555444433 2334444444444444555555555544444332 113344444444444
Q ss_pred hCCChhhHHHHHHHHHH
Q 041882 158 DNDRVDDAKRMFDDADK 174 (491)
Q Consensus 158 ~~~~~~~a~~~~~~~~~ 174 (491)
..|++++|...|++..+
T Consensus 92 ~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 44444444444444443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.55 E-value=5.3e-06 Score=62.63 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=60.0
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041882 288 NFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFL 367 (491)
Q Consensus 288 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 367 (491)
.+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 3444555555555555555555555544322 44555555666666666666666666655432 334455555566666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041882 368 RVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLL 402 (491)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 402 (491)
..|++++|...++++.+.. +.+...+..+..++.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 6666666666666665532 123344444444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.55 E-value=9.1e-07 Score=69.70 Aligned_cols=95 Identities=9% Similarity=0.087 Sum_probs=45.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILV 157 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 157 (491)
.+..+...+.+.|++++|.+.|+.+...+ |.+...|..+..++...|++++|+..|++....++. +...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 34444444444555555555555544443 334444444555555555555555555544443321 3444444444555
Q ss_pred hCCChhhHHHHHHHHHH
Q 041882 158 DNDRVDDAKRMFDDADK 174 (491)
Q Consensus 158 ~~~~~~~a~~~~~~~~~ 174 (491)
..|++++|...|++..+
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555544444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=8e-07 Score=70.02 Aligned_cols=99 Identities=12% Similarity=0.115 Sum_probs=68.6
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHH
Q 041882 75 SYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLD 154 (491)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 154 (491)
+...+..+...+.+.|++++|...|+...... +.+...+..+..++...|++++|+..|++....+. .+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence 34455666667777777777777777777665 55667777777777777777777777777766542 25566777777
Q ss_pred HHHhCCChhhHHHHHHHHHHC
Q 041882 155 ILVDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 155 ~~~~~~~~~~a~~~~~~~~~~ 175 (491)
++...|++++|...|+...+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777776654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=3.7e-06 Score=64.16 Aligned_cols=90 Identities=11% Similarity=-0.015 Sum_probs=36.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 041882 293 MSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDF 372 (491)
Q Consensus 293 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 372 (491)
...+...|++++|...+++....... +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 96 (131)
T 2vyi_A 19 GNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKH 96 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCH
Confidence 33333444444444444443333221 33334444444444444444444444443321 22233344444444444444
Q ss_pred HHHHHHHHHHHh
Q 041882 373 EGSLKVLNAMLT 384 (491)
Q Consensus 373 ~~a~~~~~~~~~ 384 (491)
++|...+++..+
T Consensus 97 ~~A~~~~~~~~~ 108 (131)
T 2vyi_A 97 VEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 444444444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.7e-06 Score=65.28 Aligned_cols=92 Identities=15% Similarity=0.136 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 041882 184 FNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCF 263 (491)
Q Consensus 184 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 263 (491)
+..+...+...|++++|...|++..+.... +...+..+..++...|++++|...+++..+.... +...+..+..++..
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~ 96 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH
Confidence 333333444444444444444444332211 3333333344444444444444444443332111 23333333333333
Q ss_pred cCCHhHHHHHHHHH
Q 041882 264 KGEYNEAKKMMFDM 277 (491)
Q Consensus 264 ~~~~~~a~~~~~~~ 277 (491)
.|++++|...++..
T Consensus 97 ~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 97 MKDYTKAMDVYQKA 110 (133)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHH
Confidence 34444444333333
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.2e-06 Score=71.42 Aligned_cols=19 Identities=0% Similarity=0.244 Sum_probs=7.1
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 041882 365 GFLRVEDFEGSLKVLNAML 383 (491)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~ 383 (491)
.+...|++++|...|+++.
T Consensus 124 ~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 124 DAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHH
Confidence 3333333333333333333
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-06 Score=68.97 Aligned_cols=93 Identities=9% Similarity=-0.055 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 041882 324 YNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLK 403 (491)
Q Consensus 324 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 403 (491)
+..+...+...|++++|...|++..... +.+...|..+..++...|++++|...|++++... +.+...+..+..+|..
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3333444444444444444444443322 2233344444444444444444444444444431 1123344444444444
Q ss_pred CCCHHHHHHHHHHHH
Q 041882 404 GGKVDDACFVLEEME 418 (491)
Q Consensus 404 ~g~~~~a~~~~~~~~ 418 (491)
.|++++|...|++..
T Consensus 102 ~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 102 XGELAEAESGLFLAQ 116 (148)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 444444444444444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.48 E-value=4.3e-06 Score=76.02 Aligned_cols=87 Identities=7% Similarity=-0.143 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041882 252 VTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYL 331 (491)
Q Consensus 252 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 331 (491)
..|..+..+|.+.|++++|+..++..++.. +.+...+..+..+|...|++++|...|+++.+..+. +...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 344444455555555555555555554442 223444444455555555555555555555444332 444455555555
Q ss_pred HhcCCHHHH
Q 041882 332 CKEDRAAEA 340 (491)
Q Consensus 332 ~~~~~~~~a 340 (491)
...|+.++|
T Consensus 275 ~~~~~~~~a 283 (336)
T 1p5q_A 275 QRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.47 E-value=4e-06 Score=76.18 Aligned_cols=96 Identities=14% Similarity=-0.057 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 041882 321 VVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVG 400 (491)
Q Consensus 321 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 400 (491)
...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++...|++++|...|+++++.. +.+...+..+..+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 4567777788888888888888888877754 4566777778888888888888888888887753 2356677777788
Q ss_pred HHcCCCHHHH-HHHHHHHH
Q 041882 401 LLKGGKVDDA-CFVLEEME 418 (491)
Q Consensus 401 ~~~~g~~~~a-~~~~~~~~ 418 (491)
+.+.|+.++| ...++.|.
T Consensus 274 ~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888877 44566554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.44 E-value=5.4e-06 Score=63.10 Aligned_cols=97 Identities=9% Similarity=-0.038 Sum_probs=60.9
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHH
Q 041882 77 PSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDIL 156 (491)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 156 (491)
..+..+...+.+.|++++|.+.|+...+.. +.+...+..+..++.+.|++++|+..|++....+. .+..+|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 345555666666666666666666666654 44566666666666666666666666666665542 2455666666666
Q ss_pred HhCCChhhHHHHHHHHHHC
Q 041882 157 VDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~ 175 (491)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 6666666666666665543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=5.3e-07 Score=75.13 Aligned_cols=123 Identities=10% Similarity=-0.039 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHCCCC-CC--------------HHhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041882 147 QSFNSLLDILVDNDRVDDAKRMFDDADKMGFR-PN--------------LISFNVMIKGRLKKGEWEEASRVFDEMLERE 211 (491)
Q Consensus 147 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 211 (491)
..+..+...+...|++++|+..|++..+.... |+ ...+..+..++...|++++|+..++...+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34555555555566666666666655543111 10 1445555555556666666666666655542
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 041882 212 VPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAK 271 (491)
Q Consensus 212 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 271 (491)
. .+...+..+..+|...|++++|...|++..+.... +...+..+..++...++..++.
T Consensus 119 p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 K-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC--
T ss_pred c-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 2 24555555556666666666666666665554222 3444444444444444444333
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.42 E-value=4.4e-06 Score=63.75 Aligned_cols=107 Identities=10% Similarity=-0.026 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC----HHhHH
Q 041882 322 VTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSR--HCPR----LETFS 395 (491)
Q Consensus 322 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~ 395 (491)
..+..+...+.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|+..+++.++.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345566677777777777777777776643 4455666777777777777777777777776531 1111 23566
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 041882 396 CLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEG 431 (491)
Q Consensus 396 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 431 (491)
.+..++...|++++|++.|++..+. .||+.....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 6677777788888888888877653 455554443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2e-06 Score=67.17 Aligned_cols=95 Identities=13% Similarity=0.133 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILV 157 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 157 (491)
.+..+...+.+.|++++|...|+.+...+ +.+...+..+..++...|++++|+..|++....+. .+...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHH
Confidence 34444555555666666666666655554 44555555566666666666666666666555432 24455555555666
Q ss_pred hCCChhhHHHHHHHHHH
Q 041882 158 DNDRVDDAKRMFDDADK 174 (491)
Q Consensus 158 ~~~~~~~a~~~~~~~~~ 174 (491)
..|++++|...|+...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666655544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=7.7e-07 Score=74.16 Aligned_cols=27 Identities=7% Similarity=0.102 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041882 218 TYNSLIGFLCRTGEMGKAKGLFEDMIK 244 (491)
Q Consensus 218 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 244 (491)
.+..+...+...|++++|+..|++..+
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 66 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALD 66 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555555555555554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.39 E-value=7e-06 Score=62.61 Aligned_cols=96 Identities=7% Similarity=0.093 Sum_probs=57.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--cC----HHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCV--RT----LQSFNS 151 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 151 (491)
++..+...+.+.|++++|.+.|+...+.. |.+...|..+..+|...|++++|++.+++..+.+.. .+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556666667777777777777666655 445666666666777777777777666665543210 00 124555
Q ss_pred HHHHHHhCCChhhHHHHHHHHHH
Q 041882 152 LLDILVDNDRVDDAKRMFDDADK 174 (491)
Q Consensus 152 ll~~~~~~~~~~~a~~~~~~~~~ 174 (491)
+..++...|++++|++.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55566666666666666666554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-05 Score=61.04 Aligned_cols=95 Identities=12% Similarity=0.052 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLL 402 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 402 (491)
.|..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|+..+++.++.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 44455555555666666666666555432 3345555555566666666666666666665542 123455555666666
Q ss_pred cCCCHHHHHHHHHHHHH
Q 041882 403 KGGKVDDACFVLEEMEK 419 (491)
Q Consensus 403 ~~g~~~~a~~~~~~~~~ 419 (491)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 66666666666666554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.7e-05 Score=59.04 Aligned_cols=96 Identities=15% Similarity=0.090 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILV 157 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 157 (491)
.+..+...+...|+++.|.+.++...... +.+...+..+...+...|++++|...+++...... .+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 44445555555555555555555555543 33445555555555555555555555555544331 23445555555555
Q ss_pred hCCChhhHHHHHHHHHHC
Q 041882 158 DNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 158 ~~~~~~~a~~~~~~~~~~ 175 (491)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 555555555555555443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.36 E-value=2.7e-06 Score=66.49 Aligned_cols=98 Identities=14% Similarity=0.011 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 041882 111 ETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKG 190 (491)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 190 (491)
...+..+...+.+.|++++|+..|++....+. .+...|..+..++...|++++|+..|++..... +.+...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 34445555566666666666666666655442 255666666666666666666666666666543 2234455556666
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 041882 191 RLKKGEWEEASRVFDEMLER 210 (491)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~~ 210 (491)
+...|++++|.+.|+...+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666665543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=3.2e-05 Score=57.51 Aligned_cols=91 Identities=16% Similarity=0.059 Sum_probs=39.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 041882 292 LMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVED 371 (491)
Q Consensus 292 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 371 (491)
+...+...|++++|...++......+. +...+..+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 87 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhh
Confidence 333344444444444444444433222 33444444444444444444444444444321 2233344444444444444
Q ss_pred HHHHHHHHHHHHh
Q 041882 372 FEGSLKVLNAMLT 384 (491)
Q Consensus 372 ~~~a~~~~~~~~~ 384 (491)
+++|...+++..+
T Consensus 88 ~~~A~~~~~~~~~ 100 (118)
T 1elw_A 88 FEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.34 E-value=7.2e-06 Score=60.54 Aligned_cols=96 Identities=8% Similarity=-0.007 Sum_probs=49.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc--CHHHHHHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVR--TLQSFNSLLDI 155 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~ 155 (491)
.+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|+..|++..... +. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 44444555555555555555555555443 3344455555555555555555555555554432 12 34455555555
Q ss_pred HHhC-CChhhHHHHHHHHHHC
Q 041882 156 LVDN-DRVDDAKRMFDDADKM 175 (491)
Q Consensus 156 ~~~~-~~~~~a~~~~~~~~~~ 175 (491)
+... |++++|.+.++.....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5555 5555555555555443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.4e-05 Score=61.75 Aligned_cols=99 Identities=14% Similarity=0.103 Sum_probs=57.0
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHH
Q 041882 74 HSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLL 153 (491)
Q Consensus 74 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 153 (491)
.+...+..+...+...|+++.|...++...... +.+...+..+..++...|++++|+..+++....+. .+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 344555555666666666666666666655554 34455566666666666666666666666555432 2455555566
Q ss_pred HHHHhCCChhhHHHHHHHHHH
Q 041882 154 DILVDNDRVDDAKRMFDDADK 174 (491)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~ 174 (491)
.++...|++++|...|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666655544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.3e-05 Score=64.23 Aligned_cols=99 Identities=11% Similarity=0.039 Sum_probs=78.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHH
Q 041882 75 SYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLD 154 (491)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 154 (491)
+...+..+...+.+.|++++|.+.|+...+.. +.+...+..+..++.+.|++++|+..|++....+. .+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 45567777778888888888888888888776 55778888888888888888888888888877653 36778888888
Q ss_pred HHHhCCChhhHHHHHHHHHHC
Q 041882 155 ILVDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 155 ~~~~~~~~~~a~~~~~~~~~~ 175 (491)
++...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888887765
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.4e-05 Score=61.09 Aligned_cols=94 Identities=16% Similarity=0.070 Sum_probs=66.1
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCCCCC----HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGSKHS----YPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQH 120 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (491)
......+...|++++|+..|++..+.. |+ ...+..+...+...|++++|.+.++...+.. +.+...+..+..+
T Consensus 32 ~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 108 (148)
T 2dba_A 32 RKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHH
Confidence 345556667788888888888777643 44 5566777777777777777777777777664 4456677777777
Q ss_pred HHhcCCHHHHHHHHHHhhhCC
Q 041882 121 YGKAHLVDKAIEVFNRMTSFD 141 (491)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~ 141 (491)
+...|++++|...|++.....
T Consensus 109 ~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 109 LEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHcC
Confidence 777777777777777776643
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.7e-05 Score=63.58 Aligned_cols=94 Identities=6% Similarity=-0.004 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLR 368 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 368 (491)
+..+...+.+.|++++|...|++..+.... +...|..+..+|...|++++|+..+++..+.. +.+...|..+..++..
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344444444555555555555555444332 44455555555555555555555555554432 2234444555555555
Q ss_pred cCCHHHHHHHHHHHHh
Q 041882 369 VEDFEGSLKVLNAMLT 384 (491)
Q Consensus 369 ~~~~~~a~~~~~~~~~ 384 (491)
.|++++|...|++.++
T Consensus 92 ~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 5555555555555544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.5e-05 Score=58.82 Aligned_cols=96 Identities=10% Similarity=0.061 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHhHHHHHHH
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCP--RLETFSCLLVG 400 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 400 (491)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 44445555555555555555555554432 3344455555555555666666666666655542 12 34555555566
Q ss_pred HHcC-CCHHHHHHHHHHHHHC
Q 041882 401 LLKG-GKVDDACFVLEEMEKR 420 (491)
Q Consensus 401 ~~~~-g~~~~a~~~~~~~~~~ 420 (491)
+... |++++|.+.+++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 6666 6666666666665543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.6e-05 Score=72.71 Aligned_cols=59 Identities=14% Similarity=0.025 Sum_probs=36.5
Q ss_pred chHHHhhhcCChHHHHHHHHHhhhCCCCCCH----------------HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041882 46 PFVNDLKEIRDPDEALSLFHRHHQMGSKHSY----------------PSYASLIYKLARARDFDAVETVLGYIQD 104 (491)
Q Consensus 46 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 104 (491)
.-.+.+...|++++|++.|..+......... .++..++..|...|++++|.+.+..+..
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456678889999999999888764322111 1245555666666666666666655443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=5.5e-05 Score=71.38 Aligned_cols=197 Identities=15% Similarity=0.097 Sum_probs=137.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-cC
Q 041882 83 IYKLARARDFDAVETVLGYIQDFNIRCK----------------ETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCV-RT 145 (491)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 145 (491)
.+.+.+.|++++|.+.|..+.+...... ...+..++..|...|++++|.+.+.++...... ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567889999999999999887542211 134778899999999999999999887543111 11
Q ss_pred H----HHHHHHHHHHHhCCChhhHHHHHHHHHHC----CCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHhC--CC--
Q 041882 146 L----QSFNSLLDILVDNDRVDDAKRMFDDADKM----GFRPN-LISFNVMIKGRLKKGEWEEASRVFDEMLER--EV-- 212 (491)
Q Consensus 146 ~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~-- 212 (491)
. .+.+.+...+...|+++.+..++...... +..+. ..++..+...+...|++++|..+++.+... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 22333444455568899999988876542 22222 456777888999999999999999887653 11
Q ss_pred -CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCC-C-C--HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 041882 213 -PPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK--GTY-P-N--AVTYALLMEGLCFKGEYNEAKKMMFDMAY 279 (491)
Q Consensus 213 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~-~-~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (491)
+....++..++..|...|++++|..++++.... ... | . ...+..+...+...+++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 112457888889999999999999999887643 111 1 1 23455566667788899999888777654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.28 E-value=9.5e-06 Score=61.85 Aligned_cols=98 Identities=10% Similarity=0.119 Sum_probs=60.1
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--cC----HHHHH
Q 041882 77 PSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCV--RT----LQSFN 150 (491)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 150 (491)
..+..+...+...|+++.|...++...... +.+...+..+...+...|++++|...+++....... ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666666777777777777666654 445566666666666677777777666666543211 11 45566
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHC
Q 041882 151 SLLDILVDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 151 ~ll~~~~~~~~~~~a~~~~~~~~~~ 175 (491)
.+..++...|++++|.+.|++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6666666666666666666666554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.27 E-value=2.8e-05 Score=59.97 Aligned_cols=98 Identities=15% Similarity=0.006 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 041882 320 DVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLV 399 (491)
Q Consensus 320 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 399 (491)
+...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...++++++.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 45566666666666666666666666665543 3345566666666666666666666666666643 224556666666
Q ss_pred HHHcCCCHHHHHHHHHHHHH
Q 041882 400 GLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 400 ~~~~~g~~~~a~~~~~~~~~ 419 (491)
++...|++++|...|+++.+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66677777777776666654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.27 E-value=9.9e-06 Score=61.74 Aligned_cols=96 Identities=11% Similarity=0.042 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHhHHH
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRH--CPR----LETFSC 396 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 396 (491)
.+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++++.+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444444455555555555555544432 23344444445555555555555555555444310 011 344455
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Q 041882 397 LLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 397 l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
+..++...|++++|...++++.+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555555555555555554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=5.4e-05 Score=59.07 Aligned_cols=96 Identities=11% Similarity=0.091 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH
Q 041882 146 LQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPN----LISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNS 221 (491)
Q Consensus 146 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 221 (491)
...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...++...+.... +...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHH
Confidence 334444444444444444444444444433 222 233444444444445555555544444443211 3344444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 041882 222 LIGFLCRTGEMGKAKGLFEDMIK 244 (491)
Q Consensus 222 ll~~~~~~~~~~~a~~~~~~~~~ 244 (491)
+..++...|++++|...|++..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445555555555555554444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=5.4e-05 Score=73.71 Aligned_cols=175 Identities=9% Similarity=-0.026 Sum_probs=131.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 041882 301 KIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDR----------AAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVE 370 (491)
Q Consensus 301 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 370 (491)
..++|.+.++.+.+.++. +..+|+.--.++...|+ ++++++.++++.+.. +-+..+|..-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 346778888888887666 67777777766766666 888999999888764 567778888777788888
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------
Q 041882 371 --DFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGG-KVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDG------ 441 (491)
Q Consensus 371 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~------ 441 (491)
+++++++.++++.+.. +-+...|+.-..++.+.| .++++.+.++++.+.... |...|+.....+....+
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 6799999999998864 346778888888888888 889999999988876443 67788877776665322
Q ss_pred --------CcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCCcchhh
Q 041882 442 --------NAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMGTCVVI 481 (491)
Q Consensus 442 --------~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 481 (491)
.+++++.+.+.+.. .|++...+..++|++...|+++++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~~ 245 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDVL 245 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSCE
T ss_pred cccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccce
Confidence 24445555544443 499999999999999999987664
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=8.3e-06 Score=61.55 Aligned_cols=94 Identities=12% Similarity=0.005 Sum_probs=63.9
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA 124 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (491)
......+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...++...+.. +.+...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 344556666777777777777776644 4456667777777777777777777777777665 44566677777777777
Q ss_pred CCHHHHHHHHHHhhhC
Q 041882 125 HLVDKAIEVFNRMTSF 140 (491)
Q Consensus 125 ~~~~~a~~~~~~~~~~ 140 (491)
|++++|+..|++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7777777777776654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.1e-05 Score=60.80 Aligned_cols=95 Identities=9% Similarity=-0.030 Sum_probs=65.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHh
Q 041882 79 YASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVD 158 (491)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 158 (491)
+..+...+.+.|++++|...++...+.. +.+...+..+..++...|++++|+..|++....+.. +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 4445566667777777777777777765 556677777777777777777777777777665422 56677777777777
Q ss_pred CCChhhHHHHHHHHHHC
Q 041882 159 NDRVDDAKRMFDDADKM 175 (491)
Q Consensus 159 ~~~~~~a~~~~~~~~~~ 175 (491)
.|++++|+..+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777776653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.11 E-value=7.8e-06 Score=78.08 Aligned_cols=120 Identities=8% Similarity=0.032 Sum_probs=75.7
Q ss_pred HHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 48 VNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLV 127 (491)
Q Consensus 48 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 127 (491)
...+...|++++|++.|++..+.. +.+..++..+..++.+.|++++|.+.++...+.. +.+...+..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 344566777777777777777643 4456677777777777777777777777777765 45566777777777777777
Q ss_pred HHHHHHHHHhhhCCCCcCHHHHHHHHHH--HHhCCChhhHHHHHH
Q 041882 128 DKAIEVFNRMTSFDCVRTLQSFNSLLDI--LVDNDRVDDAKRMFD 170 (491)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~ 170 (491)
++|++.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777776654321 33344444444 566667777777666
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.10 E-value=8.4e-06 Score=61.10 Aligned_cols=86 Identities=12% Similarity=0.101 Sum_probs=57.0
Q ss_pred cCChHHHHHHHHHhhhCC--CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041882 54 IRDPDEALSLFHRHHQMG--SKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAI 131 (491)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 131 (491)
.|++++|+..|++..+.+ .+.+...+..+...+...|++++|.+.++...+.. +.+..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 467777777777777643 13344566777777777777777777777777765 455677777777777777777777
Q ss_pred HHHHHhhhC
Q 041882 132 EVFNRMTSF 140 (491)
Q Consensus 132 ~~~~~~~~~ 140 (491)
..|++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.10 E-value=8.6e-05 Score=56.40 Aligned_cols=92 Identities=9% Similarity=0.039 Sum_probs=47.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcC---HHHHHHHHHH
Q 041882 82 LIYKLARARDFDAVETVLGYIQDFNIRCKE---TLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRT---LQSFNSLLDI 155 (491)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~ 155 (491)
+...+...|++++|.+.++.+.+.. +.+. ..+..+...+...|++++|+..|++....... + ..++..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 3444555556666666665555543 2222 34555555555556666666555555443311 2 3445555555
Q ss_pred HHhCCChhhHHHHHHHHHHC
Q 041882 156 LVDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~~ 175 (491)
+...|++++|...|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 55555555555555555543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.9e-05 Score=62.68 Aligned_cols=131 Identities=15% Similarity=0.047 Sum_probs=75.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHH
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYK-PD----VVTYNILINYLCKEDRAAEAYKVLTEMQIG----GCKP-NAAT 358 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 358 (491)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+. +..+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344445555555666665555554432100 01 135556666666777777777777665432 1001 1234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 359 YRMMVDGFLRVEDFEGSLKVLNAMLTS----RHC-PRLETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
+..+...+...|++++|...+++..+. +.. .....+..+...+...|++++|...+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555666677777777777777766643 111 1134566677777788888888888877664
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.7e-05 Score=61.84 Aligned_cols=60 Identities=10% Similarity=-0.000 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIR-CK----ETLFISLIQHYGKAHLVDKAIEVFNRM 137 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 137 (491)
++..+...+...|++++|.+.++...+.... .+ ..++..+...+...|++++|...+++.
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555555566666666666554432100 01 123444555555555555555555544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00024 Score=53.87 Aligned_cols=60 Identities=10% Similarity=0.115 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 359 YRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPR---LETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
+..+..++...|++++|...|+++.+.. +.+ ...+..+..++...|++++|...|+++.+
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333344444444444444444444321 011 23333444444444444444444444443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.7e-05 Score=75.82 Aligned_cols=117 Identities=12% Similarity=-0.007 Sum_probs=63.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 296 LGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGS 375 (491)
Q Consensus 296 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 375 (491)
+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|++.+++..+.. +.+...+..+..++...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34556666666666666555333 45566666666666666666666666666542 33455566666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHH--HHcCCCHHHHHHHHH
Q 041882 376 LKVLNAMLTSRHCPRLETFSCLLVG--LLKGGKVDDACFVLE 415 (491)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 415 (491)
.+.|+++.+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666666542 1122333333333 555666666666665
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.02 E-value=7.7e-05 Score=59.49 Aligned_cols=98 Identities=10% Similarity=0.002 Sum_probs=66.9
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhc--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 041882 77 PSYASLIYKLARARDFDAVETVLGYIQDF--------N---------IRCKETLFISLIQHYGKAHLVDKAIEVFNRMTS 139 (491)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 139 (491)
..+......+.+.|+++.|...|...... . -+.+..++..+..+|.+.|++++|+..+++...
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 35566677777888888888888776654 1 022335666777777777777777777777766
Q ss_pred CCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC
Q 041882 140 FDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 140 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 175 (491)
.+. .+..+|..+..++...|++++|...|++..+.
T Consensus 92 ~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 REE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 542 35667777777777777777777777777664
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00011 Score=69.83 Aligned_cols=86 Identities=8% Similarity=-0.167 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLR 368 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 368 (491)
|..+..+|.+.|++++|...++++.+.... +...|..+..+|...|++++|...|++..+.. +-+...+..+..++..
T Consensus 320 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 320 FLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKK 397 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344444444445555555555444444332 44444445555555555555555555554431 1222344444444444
Q ss_pred cCCHHHHH
Q 041882 369 VEDFEGSL 376 (491)
Q Consensus 369 ~~~~~~a~ 376 (491)
.++.+++.
T Consensus 398 ~~~~~~a~ 405 (457)
T 1kt0_A 398 AKEHNERD 405 (457)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00055 Score=66.60 Aligned_cols=170 Identities=9% Similarity=-0.017 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCC--
Q 041882 93 DAVETVLGYIQDFNIRCKETLFISLIQHYGKAHL----------VDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDND-- 160 (491)
Q Consensus 93 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-- 160 (491)
++|.+.++.+...+ +-+..+|+.--..+...|+ ++++++.++++...+.+ +..+|+.-.-++.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 46677777777766 5566667666666665555 78888888888776643 7778877777777777
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc----------
Q 041882 161 RVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKG-EWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRT---------- 229 (491)
Q Consensus 161 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---------- 229 (491)
+++++++.++++.+.... +...|+.-...+.+.| .++++++.++++.+..+. |...|+....++...
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccc
Confidence 568888888888776533 6677777766777777 778888888888776554 677777776666653
Q ss_pred ----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 230 ----GEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEY 267 (491)
Q Consensus 230 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 267 (491)
+.++++++.+++.+..... |...|.-.-..+.+.++.
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCC
T ss_pred cccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCc
Confidence 4568888888888876443 666777766666666653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.99 E-value=9.9e-05 Score=70.11 Aligned_cols=96 Identities=10% Similarity=-0.013 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 041882 321 VVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVG 400 (491)
Q Consensus 321 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 400 (491)
...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+++++.. +.+...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 5678888899999999999999999998764 5567888888999999999999999999998853 2355677888888
Q ss_pred HHcCCCHHHHHH-HHHHHH
Q 041882 401 LLKGGKVDDACF-VLEEME 418 (491)
Q Consensus 401 ~~~~g~~~~a~~-~~~~~~ 418 (491)
+.+.|+.+++.+ .+..|.
T Consensus 395 ~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 888888887664 455554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.97 E-value=9.4e-05 Score=67.97 Aligned_cols=90 Identities=10% Similarity=0.003 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 041882 145 TLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIG 224 (491)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 224 (491)
+..+|..+..++.+.|++++|+..+++..+.. +.+...+..+..++...|++++|++.|++..+.... +...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34555566666666666666666666665542 123455555566666666666666666665554322 4455555555
Q ss_pred HHHhcCChhHHH
Q 041882 225 FLCRTGEMGKAK 236 (491)
Q Consensus 225 ~~~~~~~~~~a~ 236 (491)
++...++.+++.
T Consensus 350 ~~~~~~~~~~a~ 361 (370)
T 1ihg_A 350 VKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.4e-05 Score=59.77 Aligned_cols=86 Identities=7% Similarity=-0.165 Sum_probs=52.8
Q ss_pred cCChhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHH
Q 041882 89 ARDFDAVETVLGYIQDFN--IRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAK 166 (491)
Q Consensus 89 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 166 (491)
.|++++|...|+...+.+ -+.+...+..+...+...|++++|+..|++..+..+. +..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 466667777777766653 1334456666666777777777777777776665422 5666666677777777777777
Q ss_pred HHHHHHHHC
Q 041882 167 RMFDDADKM 175 (491)
Q Consensus 167 ~~~~~~~~~ 175 (491)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777666554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00014 Score=57.95 Aligned_cols=61 Identities=11% Similarity=0.048 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
.|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++...|++++|...|++.++
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 34444444444444444444444444332 22333444444444444444444444444444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00013 Score=67.10 Aligned_cols=137 Identities=8% Similarity=-0.092 Sum_probs=66.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHH
Q 041882 218 TYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLG 297 (491)
Q Consensus 218 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 297 (491)
.+..+...+.+.|++++|+..|++.++.- +.. ......+.+ .... +.+...+..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~-------~~~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADG-------AKLQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHH-------GGGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHH-------HHHH-HHHHHHHHHHHHHHH
Confidence 45666777777788888887777776520 000 000000000 0000 112334444555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041882 298 KRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSL 376 (491)
Q Consensus 298 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 376 (491)
+.|++++|...++++.+.... +...|..+..+|...|++++|...|++..+.. +.+...+..+...+...++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554332 45555555555555566666666555555432 223444444444444445444443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00024 Score=55.44 Aligned_cols=96 Identities=11% Similarity=0.025 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhhC------
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRC------KE-----TLFISLIQHYGKAHLVDKAIEVFNRMTSF------ 140 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 140 (491)
.+......+.+.|++++|.+.|+...+..... +. ..|..+..++.+.|++++|+..+++..+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34455556666777777777777766653210 11 25555555556666666666555555543
Q ss_pred -CCCcCHHHH----HHHHHHHHhCCChhhHHHHHHHHHH
Q 041882 141 -DCVRTLQSF----NSLLDILVDNDRVDDAKRMFDDADK 174 (491)
Q Consensus 141 -~~~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~ 174 (491)
+. .+...| .....++...|++++|+..|++..+
T Consensus 93 ~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 21 133444 5555555555555555555555433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00099 Score=51.28 Aligned_cols=111 Identities=13% Similarity=0.102 Sum_probs=65.6
Q ss_pred CChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 041882 55 RDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGK----AHLVDKA 130 (491)
Q Consensus 55 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 130 (491)
+++++|+..|++..+.| .+.. . +...+...+.++.|.+.|+...+.+ +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45666777777666655 2222 2 4555555556666666666666654 45555666666655 5666666
Q ss_pred HHHHHHhhhCCCCcCHHHHHHHHHHHHh----CCChhhHHHHHHHHHHCC
Q 041882 131 IEVFNRMTSFDCVRTLQSFNSLLDILVD----NDRVDDAKRMFDDADKMG 176 (491)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 176 (491)
++.|++..+.| +..++..|...|.. .+++++|..+|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666543 45555666666655 566666666666665554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00011 Score=66.56 Aligned_cols=141 Identities=12% Similarity=0.110 Sum_probs=60.7
Q ss_pred HHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 041882 48 VNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLV 127 (491)
Q Consensus 48 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 127 (491)
...+...|++++|+..|++.... .|+... +...+++.++...+ ....+..+..++.+.|++
T Consensus 186 g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~~~~g~~ 246 (338)
T 2if4_A 186 GNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACLIKLKRY 246 (338)
T ss_dssp HHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHHHHcCCH
Confidence 33445567888888888776653 233221 11111122211111 012566666667777777
Q ss_pred HHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHH-HHhcCChHHHHHHHH
Q 041882 128 DKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPN-LISFNVMIKG-RLKKGEWEEASRVFD 205 (491)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~-~~~~~~~~~a~~~~~ 205 (491)
++|+..+++....+. .+..+|..+..+|...|++++|...|++..+.. |+ ...+..+... ....+..+.+.+.|.
T Consensus 247 ~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 247 DEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777665542 256667777777777777777777777665442 32 2333333333 223345566666666
Q ss_pred HHHhC
Q 041882 206 EMLER 210 (491)
Q Consensus 206 ~~~~~ 210 (491)
.|...
T Consensus 324 ~~l~~ 328 (338)
T 2if4_A 324 GIFKG 328 (338)
T ss_dssp -----
T ss_pred HhhCC
Confidence 66544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00086 Score=51.63 Aligned_cols=110 Identities=11% Similarity=-0.024 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCChHHHH
Q 041882 126 LVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLK----KGEWEEAS 201 (491)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~ 201 (491)
++++|++.|++..+.+ .++. . |...|...+.+++|.++|++..+.| +...+..|-..|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3445555555554443 1121 1 4444444444555555555555442 34444444444544 45555555
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 041882 202 RVFDEMLEREVPPTVVTYNSLIGFLCR----TGEMGKAKGLFEDMIKKG 246 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 246 (491)
++|++..+.| +...+..|...|.. .+++++|..+|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555543 34455555555555 555566666665555554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00012 Score=66.34 Aligned_cols=114 Identities=11% Similarity=-0.035 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHH
Q 041882 216 VVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSD 295 (491)
Q Consensus 216 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 295 (491)
...+..+...+.+.|++++|...|++.+.. .|+... +...++.+++...+. ...+..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 445666666677777777777777776654 222211 122222333222111 1244555555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 296 LGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQI 349 (491)
Q Consensus 296 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 349 (491)
+.+.|++++|...++...+.... +...|..+..+|...|++++|...|++..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666665554332 455555555566666666666666655543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0006 Score=53.14 Aligned_cols=24 Identities=13% Similarity=0.001 Sum_probs=14.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 395 SCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 395 ~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
.....++...|++++|+..|++..
T Consensus 106 ~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 106 YSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHCCCHHHHHHHHHHHH
Confidence 555556666666666666666554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.70 E-value=7.8e-05 Score=54.83 Aligned_cols=90 Identities=7% Similarity=-0.102 Sum_probs=50.8
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcC------HHHH
Q 041882 76 YPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRT------LQSF 149 (491)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~ 149 (491)
...+..+...+...|++++|.+.++...+.. +.+...+..+..++...|++++|+..+++....... + ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHH
Confidence 3455556666666666666666666666554 445566666666666666666666666666554321 2 3344
Q ss_pred HHHHHHHHhCCChhhHHH
Q 041882 150 NSLLDILVDNDRVDDAKR 167 (491)
Q Consensus 150 ~~ll~~~~~~~~~~~a~~ 167 (491)
..+..++...|+++.|..
T Consensus 82 ~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHhHhhhHh
Confidence 444444444444444433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00014 Score=69.01 Aligned_cols=86 Identities=7% Similarity=-0.015 Sum_probs=37.9
Q ss_pred HhcCCHHHHHHHHHHhhhC-----C--CCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC-----CC-CCC-HHhHHHH
Q 041882 122 GKAHLVDKAIEVFNRMTSF-----D--CVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM-----GF-RPN-LISFNVM 187 (491)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~p~-~~~~~~l 187 (491)
...|++++|+.++++.... | .+....+++.|..+|...|++++|+.++++.++. |. .|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455555555555444321 1 0112334555555555555555555555544321 10 111 2334444
Q ss_pred HHHHHhcCChHHHHHHHHHH
Q 041882 188 IKGRLKKGEWEEASRVFDEM 207 (491)
Q Consensus 188 l~~~~~~~~~~~a~~~~~~~ 207 (491)
...|...|++++|+.++++.
T Consensus 400 a~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 44555555555555554443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00019 Score=68.08 Aligned_cols=125 Identities=9% Similarity=-0.026 Sum_probs=93.4
Q ss_pred HHhcCChhHHHHHHHHHHhcC---C-C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-----C--CCcCHHHHHH
Q 041882 86 LARARDFDAVETVLGYIQDFN---I-R---CKETLFISLIQHYGKAHLVDKAIEVFNRMTSF-----D--CVRTLQSFNS 151 (491)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~~~~---~-~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ 151 (491)
+...|++++|..+++...+.. . + ....+++.|...|...|++++|+.++++.... | .+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 557899999999998876531 1 1 12467899999999999999999998886542 2 2223567999
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHC-----CC-CCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 041882 152 LLDILVDNDRVDDAKRMFDDADKM-----GF-RPN-LISFNVMIKGRLKKGEWEEASRVFDEMLER 210 (491)
Q Consensus 152 ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 210 (491)
|...|...|++++|+.++++..+. |. .|+ ..+.+.+-.++...+.+++|+.+|..+.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987543 32 122 234456667777888888898888887653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.67 E-value=3.7e-05 Score=56.61 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 324 YNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 324 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++++
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3334444444444444444444443321 22333344444444444444444444444443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00027 Score=52.41 Aligned_cols=78 Identities=10% Similarity=0.038 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 305 AKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 305 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
+...|++..+..+. +...+..+...|...|++++|...+++..+.. +.+...+..+..++...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444443322 44455555555555555555555555554432 23344444555555555555555555555544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00048 Score=50.99 Aligned_cols=79 Identities=14% Similarity=0.013 Sum_probs=46.5
Q ss_pred HHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 041882 59 EALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMT 138 (491)
Q Consensus 59 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 138 (491)
.|+..|++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3555565555543 3445556666666666666666666666666554 3445556666666666666666666666554
Q ss_pred h
Q 041882 139 S 139 (491)
Q Consensus 139 ~ 139 (491)
.
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00057 Score=47.82 Aligned_cols=78 Identities=15% Similarity=0.162 Sum_probs=41.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHH
Q 041882 77 PSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDIL 156 (491)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 156 (491)
..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|+..|++...... .+..++..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 344555555556666666666666555543 33455555555556666666666666655554331 1344444444443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00021 Score=55.56 Aligned_cols=89 Identities=10% Similarity=-0.026 Sum_probs=63.2
Q ss_pred HhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChh----------HHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041882 50 DLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFD----------AVETVLGYIQDFNIRCKETLFISLIQ 119 (491)
Q Consensus 50 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~l~~ 119 (491)
...+.+.+++|++.++...+.. +.+...|..+..++...++++ +|+..|++.++.+ +.+..+|..+..
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ 88 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGN 88 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 4667788888999998888765 667788888888888777654 7777777777765 456666777777
Q ss_pred HHHhcC-----------CHHHHHHHHHHhhhC
Q 041882 120 HYGKAH-----------LVDKAIEVFNRMTSF 140 (491)
Q Consensus 120 ~~~~~~-----------~~~~a~~~~~~~~~~ 140 (491)
+|...| ++++|++.|++..+.
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 776553 566666666666554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00027 Score=55.01 Aligned_cols=99 Identities=12% Similarity=0.048 Sum_probs=75.3
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHhhhCCCCcCHHHHHHHHHHH
Q 041882 87 ARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLV----------DKAIEVFNRMTSFDCVRTLQSFNSLLDIL 156 (491)
Q Consensus 87 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 156 (491)
.+.+.+++|.+.++...+.+ +.+...|..+..++...+++ ++|+..|++..+.+.. +..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 45567888999999888887 67888888888888887765 5888888888887633 677888888888
Q ss_pred HhCC-----------ChhhHHHHHHHHHHCCCCCCHHhHHHHHH
Q 041882 157 VDND-----------RVDDAKRMFDDADKMGFRPNLISFNVMIK 189 (491)
Q Consensus 157 ~~~~-----------~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 189 (491)
...| ++++|++.|++.++. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 8764 788888888887775 566655544443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0022 Score=44.66 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444455555555555555544432 22344444444555555555555555555544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0011 Score=47.67 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAM 382 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 382 (491)
.+..+..+|...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++.
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333333344444444444444333321 112233333333333444444444433333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.002 Score=46.16 Aligned_cols=63 Identities=10% Similarity=0.063 Sum_probs=32.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 041882 75 SYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMT 138 (491)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 138 (491)
+...+..+...+...|++++|.+.|+...+.+ +.+...+..+..+|...|++++|++.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555555555544 3344455555555555555555555555443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.019 Score=51.40 Aligned_cols=142 Identities=9% Similarity=-0.037 Sum_probs=88.7
Q ss_pred CCChhcHHHHHHHHHh--cC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cC--CHHHH---HHHHHHHHh
Q 041882 283 KPQLVNFGVLMSDLGK--RG---KIEEAKSLLSEMKKRQYKPDVVTYNILINYLCK---ED--RAAEA---YKVLTEMQI 349 (491)
Q Consensus 283 ~~~~~~~~~ll~~~~~--~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~--~~~~a---~~~~~~~~~ 349 (491)
+.+...|...+++... .+ +..+|..+|++..+..+. ....|..+..+|.. .+ ..... ...++....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 4555666666554432 22 246777777777776443 34444444433321 11 11111 111221111
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH
Q 041882 350 -GGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKA 428 (491)
Q Consensus 350 -~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 428 (491)
...+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.+++.... .|...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 1225677788877777777799999999999999875 77777777888888999999999999988875 566665
Q ss_pred H
Q 041882 429 W 429 (491)
Q Consensus 429 ~ 429 (491)
|
T Consensus 346 ~ 346 (372)
T 3ly7_A 346 L 346 (372)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.04 Score=49.36 Aligned_cols=70 Identities=10% Similarity=0.009 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHh
Q 041882 320 DVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLET 393 (491)
Q Consensus 320 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 393 (491)
+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++... .|...+
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 45555555555555566666666666665543 55555555555555566666666666665553 244444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0041 Score=57.96 Aligned_cols=87 Identities=11% Similarity=-0.022 Sum_probs=63.8
Q ss_pred hcCCHHHHHHHHHHHHhC---CCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CC-CHHhHHHHH
Q 041882 333 KEDRAAEAYKVLTEMQIG---GCKP---N-AATYRMMVDGFLRVEDFEGSLKVLNAMLTS-----RH-CP-RLETFSCLL 398 (491)
Q Consensus 333 ~~~~~~~a~~~~~~~~~~---~~~~---~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~ 398 (491)
..|++++|+.++++.++. -+.| + ..+++.+..+|...|++++|+.++++.++- |. .| ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357888888888876552 1122 2 356788888888999999999888887752 21 13 245788889
Q ss_pred HHHHcCCCHHHHHHHHHHHHH
Q 041882 399 VGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 399 ~~~~~~g~~~~a~~~~~~~~~ 419 (491)
..|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0068 Score=56.56 Aligned_cols=92 Identities=12% Similarity=-0.035 Sum_probs=66.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CC-CHHh
Q 041882 328 INYLCKEDRAAEAYKVLTEMQIGG---CKPN----AATYRMMVDGFLRVEDFEGSLKVLNAMLTS-----RH-CP-RLET 393 (491)
Q Consensus 328 i~~~~~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~ 393 (491)
+..+.+.|++++|+.++++..+.. +.|+ ..+++.+..+|...|++++|+.++++++.- |. .| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556788888888888877531 1222 346778888888889999998888877652 21 12 2456
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 394 FSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 394 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 78888999999999999999888764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0061 Score=43.31 Aligned_cols=55 Identities=13% Similarity=0.095 Sum_probs=25.6
Q ss_pred HhhhcCChHHHHHHHHHhhhCCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 041882 50 DLKEIRDPDEALSLFHRHHQMGSKHSYP-SYASLIYKLARARDFDAVETVLGYIQDF 105 (491)
Q Consensus 50 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 105 (491)
.+...|++++|+..|+...+.. +.+.. .+..+...+...|++++|.+.|+...+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444455555555555444432 22333 4444444444555555555555544444
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.036 Score=38.82 Aligned_cols=68 Identities=12% Similarity=0.052 Sum_probs=40.0
Q ss_pred CCCHHhHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 041882 73 KHSYPSYASLIYKLARARD---FDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFD 141 (491)
Q Consensus 73 ~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 141 (491)
+.++..+..+..++...++ .++|..+++...+.. +.++.....+...+.+.|++++|+..|+++.+.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3455555555555544333 466666666666655 4555666666666666666666666666666543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.056 Score=55.36 Aligned_cols=150 Identities=17% Similarity=0.147 Sum_probs=78.3
Q ss_pred HhcCCHHHHHH-HHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHH
Q 041882 122 GKAHLVDKAIE-VFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEA 200 (491)
Q Consensus 122 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 200 (491)
...+++++|.+ ++..+. +......++..+.+.|.++.|+++.++ . ..-.......|+++.|
T Consensus 610 ~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHH
Confidence 34566666655 332211 122235566666666776666655421 1 1112334566777777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 041882 201 SRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (491)
.++.+.+ .+...|..+...+.+.++++.|.+.|.++.+ |..+...+...++.+...++.+.....
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7765432 2566777777777777777777777777643 233444444455555554444433333
Q ss_pred CCCCChhcHHHHHHHHHhcCChHHHHHHHH
Q 041882 281 GCKPQLVNFGVLMSDLGKRGKIEEAKSLLS 310 (491)
Q Consensus 281 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 310 (491)
| -++....+|.+.|++++|.+++.
T Consensus 737 ~------~~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 737 G------KFNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp T------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred C------chHHHHHHHHHcCCHHHHHHHHH
Confidence 2 12223333444455554444443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0086 Score=55.84 Aligned_cols=63 Identities=5% Similarity=-0.019 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHC-----C-CCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041882 147 QSFNSLLDILVDNDRVDDAKRMFDDADKM-----G-FRPN-LISFNVMIKGRLKKGEWEEASRVFDEMLE 209 (491)
Q Consensus 147 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 209 (491)
.+++.|..+|...|++++|+.++++..+. | -.|+ ..+++.|...|...|++++|+.++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 45556666666666666666666554332 1 1122 23455566666666666666666665543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.029 Score=39.59 Aligned_cols=59 Identities=14% Similarity=0.144 Sum_probs=46.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 041882 82 LIYKLARARDFDAVETVLGYIQDFNIRCKET-LFISLIQHYGKAHLVDKAIEVFNRMTSFD 141 (491)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 141 (491)
....+.+.|++++|.+.++.+.+.. +.+.. .+..+..++...|++++|+..|++....+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3456677888888888888888765 55666 78888888888888888888888887754
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.018 Score=53.72 Aligned_cols=90 Identities=10% Similarity=0.086 Sum_probs=53.4
Q ss_pred HHHhcCCHHHHHHHHHHhhhC-----C--CCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC-----C-CCCC-HHhHH
Q 041882 120 HYGKAHLVDKAIEVFNRMTSF-----D--CVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM-----G-FRPN-LISFN 185 (491)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~p~-~~~~~ 185 (491)
.+...|++++|+.++++..+. | .+....+++.+..+|...|++++|+.++++.... | ..|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344556777777776665432 1 1112456677777777777777777777665432 2 1122 34566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 041882 186 VMIKGRLKKGEWEEASRVFDEMLE 209 (491)
Q Consensus 186 ~ll~~~~~~~~~~~a~~~~~~~~~ 209 (491)
.|...|...|++++|+.++++..+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 677777777777777777766544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.1 Score=53.37 Aligned_cols=153 Identities=15% Similarity=0.105 Sum_probs=86.7
Q ss_pred HhcCChhHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHH
Q 041882 227 CRTGEMGKAKG-LFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEA 305 (491)
Q Consensus 227 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 305 (491)
...+++++|.+ ++..+ ++......++..+.+.|.++.|.++.+. +. .-.......|+++.|
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHH
Confidence 45666776655 43111 1122235566666677777777655421 11 112334567788888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 306 KSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 385 (491)
.++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++.+.+...
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7775432 2667888888888888888888888877653 333444444566666655555555544
Q ss_pred CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 386 RHCPRLETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 386 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
|. ++....+|.+.|++++|.+++.++.
T Consensus 737 ~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 737 GK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp TC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred Cc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 31 2333344555666666666655443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.048 Score=41.88 Aligned_cols=80 Identities=14% Similarity=0.113 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHcCCCHHHHHH
Q 041882 338 AEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVE---DFEGSLKVLNAMLTSRHCP--RLETFSCLLVGLLKGGKVDDACF 412 (491)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 412 (491)
..+.+-|.+....+ .++..+...+..++++.+ ++++++.+++...+.. .| +...+-.+.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 33444444444444 355555555666666655 4456666666666643 12 24444555566666677777777
Q ss_pred HHHHHHH
Q 041882 413 VLEEMEK 419 (491)
Q Consensus 413 ~~~~~~~ 419 (491)
.++.+.+
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7666665
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.084 Score=36.91 Aligned_cols=67 Identities=7% Similarity=-0.042 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC
Q 041882 108 RCKETLFISLIQHYGKAHL---VDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 175 (491)
+.++..+..+..++...++ .++|..+|++....+.. ++.+...+...+...|++++|+..|+.+.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455666666666544433 56777777776665532 5666666667777777777777777776665
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.39 Score=37.84 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=59.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 296 LGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGS 375 (491)
Q Consensus 296 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 375 (491)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34567777777766654 1566777777777777777777777766442 23333445556666666
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 041882 376 LKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEM 417 (491)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 417 (491)
.++-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 65555554443 1344444555667777777766443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.085 Score=37.80 Aligned_cols=66 Identities=12% Similarity=-0.047 Sum_probs=38.6
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 041882 75 SYPSYASLIYKLARARDFDAVETVLGYIQDFN------IRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSF 140 (491)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 140 (491)
+...+..+...+.+.+++..|...++...+.. ......++..+..++.+.|+++.|+..+++....
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44455566666666777777777666655431 1223455566666666666666666666665543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.37 Score=35.74 Aligned_cols=137 Identities=10% Similarity=0.051 Sum_probs=68.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHH
Q 041882 229 TGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSL 308 (491)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 308 (491)
.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+. .|. ..+|+.......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHHH
Confidence 45566666666655543 13444555554444444444444444443321 121 123344333333
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041882 309 LSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRH 387 (491)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 387 (491)
+-.+-. +.......+..+...|.-++-.+++.++.. +.+|++.....+..+|.+.|+..+|.+++.++-+.|+
T Consensus 84 ~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 332221 334455555556666666666666666432 2355555555666666666666666666666666554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.55 Score=37.02 Aligned_cols=45 Identities=13% Similarity=0.019 Sum_probs=21.0
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 041882 87 ARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRM 137 (491)
Q Consensus 87 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 137 (491)
...|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3444444444444333 13444555555555555555555555444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.11 Score=39.88 Aligned_cols=81 Identities=12% Similarity=0.074 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcC---ChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHH
Q 041882 58 DEALSLFHRHHQMGSKHSYPSYASLIYKLARAR---DFDAVETVLGYIQDFNIR-CKETLFISLIQHYGKAHLVDKAIEV 133 (491)
Q Consensus 58 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 133 (491)
..+.+-|+...+.+ +++..+...+..++++.+ +++++..+++.+.+.+.+ .+...+-.+.-++.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 33344444333333 234444444444444444 333444444444443201 1233333344444444444444444
Q ss_pred HHHhhh
Q 041882 134 FNRMTS 139 (491)
Q Consensus 134 ~~~~~~ 139 (491)
++.+.+
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444444
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.14 Score=43.94 Aligned_cols=96 Identities=9% Similarity=-0.054 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcC-CCH
Q 041882 337 AAEAYKVLTEMQIGGCKPN---AATYRMMVDGFLRV-----EDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKG-GKV 407 (491)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 407 (491)
...|..++++..+. .|+ ...|..+...|... |+.++|.+.|++.++.+..-+..++..+.+.+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34556666666553 455 34666666666663 77888888888877743211366667777777774 778
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 041882 408 DDACFVLEEMEKRKMR--FDLKAWEGLVT 434 (491)
Q Consensus 408 ~~a~~~~~~~~~~~~~--~~~~~~~~ll~ 434 (491)
+++.+.+++....... |+....+.+-+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~~q 285 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVILSQ 285 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHHHH
Confidence 8888888887776655 55555554443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.39 E-value=0.19 Score=35.90 Aligned_cols=63 Identities=10% Similarity=0.033 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 041882 218 TYNSLIGFLCRTGEMGKAKGLFEDMIKKG------TYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 218 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (491)
-+..+...+.+.|+++.|..+|+...+.- -.+....+..+..++.+.|+++.|...+++..+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 33444444455555555555554444320 1112334444444455555555555555444443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.57 Score=34.74 Aligned_cols=68 Identities=13% Similarity=0.058 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041882 355 NAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMR 423 (491)
Q Consensus 355 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 423 (491)
+...+...+..+...|.-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.++-++|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4445666778888899999999999886553 4678888889999999999999999999999998874
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.15 Score=38.66 Aligned_cols=118 Identities=9% Similarity=0.003 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCHH----HHHHHHH---HHHhcCCHHHHHHHHHHHHhCC
Q 041882 320 DVVTYNILINYLCKEDRA------AEAYKVLTEMQIGGCKPNAA----TYRMMVD---GFLRVEDFEGSLKVLNAMLTSR 386 (491)
Q Consensus 320 ~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~----~~~~li~---~~~~~~~~~~a~~~~~~~~~~~ 386 (491)
|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|..+-- .+...+|.++|.++|+.++..+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 555666666666655666 6666677766553 444321 1111111 1234489999999999997652
Q ss_pred CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041882 387 HCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDG 441 (491)
Q Consensus 387 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 441 (491)
-.- ..+|......-.++|+...|.+++.+....+.. +...+++.++- .+.|+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~n-l~~~~ 142 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRN-LNLQK 142 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHH-HHTTC
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHh-hhcCC
Confidence 223 778888888889999999999999999987755 45566666664 34443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.88 E-value=2.5 Score=39.45 Aligned_cols=201 Identities=15% Similarity=0.205 Sum_probs=108.2
Q ss_pred CCCcchHHHhhhcCChHHHHHHHHHhhh-----CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 041882 42 KEPIPFVNDLKEIRDPDEALSLFHRHHQ-----MGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFIS 116 (491)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 116 (491)
....+-+..+.+ |+++.|++.+-.+.. .+..-.......++..|...++++...+.+..+.+.... .......
T Consensus 18 ~~~~~~~~~l~~-~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~ 95 (445)
T 4b4t_P 18 KEEFPKIDSLAQ-NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQY 95 (445)
T ss_dssp ----------CH-HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHH
Confidence 333445555654 788999887755442 233445667888999999999999998888776654322 2333334
Q ss_pred HHHHH----HhcCCHH--HHHHHHHHhhhC--C-CCc---CHHHHHHHHHHHHhCCChhhHHHHHHHHHHC--CCCCC--
Q 041882 117 LIQHY----GKAHLVD--KAIEVFNRMTSF--D-CVR---TLQSFNSLLDILVDNDRVDDAKRMFDDADKM--GFRPN-- 180 (491)
Q Consensus 117 l~~~~----~~~~~~~--~a~~~~~~~~~~--~-~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p~-- 180 (491)
+++.+ ......+ .-+.+.+.+... | +.. .......|...+...|++.+|.+++..+... |....
T Consensus 96 ~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~ 175 (445)
T 4b4t_P 96 MIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE 175 (445)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH
Confidence 44333 2222222 122222222111 1 111 1223456677777788888888888777543 21111
Q ss_pred -HHhHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041882 181 -LISFNVMIKGRLKKGEWEEASRVFDEMLE----REVPPT--VVTYNSLIGFLCRTGEMGKAKGLFEDMIK 244 (491)
Q Consensus 181 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 244 (491)
...+...++.|...+++..|..++..+.. ....|+ ...+...+..+...+++.+|...|.++..
T Consensus 176 kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 176 KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 23455666777777888877777776532 111111 23445556666667777777766666543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.22 Score=42.82 Aligned_cols=83 Identities=16% Similarity=0.146 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCCC-CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhC-CChhhHH
Q 041882 94 AVETVLGYIQDFNIR-CKETLFISLIQHYGK-----AHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDN-DRVDDAK 166 (491)
Q Consensus 94 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~ 166 (491)
.|..++++..+.... .+...|..+...|.+ .|+.++|.+.|++....+..-+..++......++.. |+.+++.
T Consensus 181 ~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~ 260 (301)
T 3u64_A 181 AAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFD 260 (301)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHH
Confidence 344444554444310 023455555555555 255555555555555543222344555555555553 5555555
Q ss_pred HHHHHHHHCC
Q 041882 167 RMFDDADKMG 176 (491)
Q Consensus 167 ~~~~~~~~~~ 176 (491)
+.+++.....
T Consensus 261 ~~L~kAL~a~ 270 (301)
T 3u64_A 261 EALDRALAID 270 (301)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHcCC
Confidence 5555555543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.35 E-value=0.38 Score=35.43 Aligned_cols=82 Identities=12% Similarity=0.073 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHhHHHHHHHHHcCCCHHHHH
Q 041882 337 AAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEG---SLKVLNAMLTSRHCP--RLETFSCLLVGLLKGGKVDDAC 411 (491)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 411 (491)
...+.+-|.+....| .++..+-..+..++++..+... ++.+++.+...+ .| .....-.+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 334444444444333 3555555555666666555444 666666665543 12 2334444556666777777777
Q ss_pred HHHHHHHHC
Q 041882 412 FVLEEMEKR 420 (491)
Q Consensus 412 ~~~~~~~~~ 420 (491)
+.++.+.+.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776653
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.73 E-value=0.54 Score=34.64 Aligned_cols=80 Identities=6% Similarity=-0.067 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhhhCCCC-cCHHHHHHHHHHHHhCCChhhHHHHH
Q 041882 94 AVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDK---AIEVFNRMTSFDCV-RTLQSFNSLLDILVDNDRVDDAKRMF 169 (491)
Q Consensus 94 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~ 169 (491)
.+.+-|......+ .++..+-..+..++++...... ++.+++++...+.+ ......-.|.-++.+.|++++|.+.+
T Consensus 19 ~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 19 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3333343333333 2444444444444444443333 44555554443210 12222333344444445555555555
Q ss_pred HHHHH
Q 041882 170 DDADK 174 (491)
Q Consensus 170 ~~~~~ 174 (491)
+.+.+
T Consensus 98 ~~lL~ 102 (126)
T 1nzn_A 98 RGLLQ 102 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.69 E-value=1.7 Score=32.97 Aligned_cols=51 Identities=8% Similarity=0.083 Sum_probs=29.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041882 300 GKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGG 351 (491)
Q Consensus 300 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 351 (491)
+++++|.++|+.+...+-+ =...|-...+.-.+.|+...|.+++......+
T Consensus 74 ~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 5666666666666554222 25555555555556666666666666666554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.54 E-value=0.00037 Score=63.80 Aligned_cols=265 Identities=13% Similarity=0.077 Sum_probs=151.9
Q ss_pred CCCCCcchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041882 40 KTKEPIPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQ 119 (491)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 119 (491)
.+.-|..+.++.+..++..+|++.|- + ..|+..|..++.+..+.|.+++-...+....+.. .++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---k---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---K---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---C---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---h---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 33446778888888888888877663 2 2344568888888888888888888877666553 23344457788
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHH
Q 041882 120 HYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEE 199 (491)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 199 (491)
+|++.++..+-++++ ..||..-...+.+-|...|.++.|.-+|..+. -|..|..++.+.|++..
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHH
Confidence 888888766543332 13566666777777888888877776665432 23334444455555555
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 041882 200 ASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAY 279 (491)
Q Consensus 200 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (491)
|.+.-++ .-++.||..+-.+|...+++.-|.-.--.++-..- ....++..|...|.+++.+.+++.-..
T Consensus 189 AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvhad-----eL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD-----ELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS-----CCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH-----HHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 4432211 12566777777777777776665544433332211 122355556666777776666666553
Q ss_pred cCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHc-CCC------CCHHHHHHHHHHHHhcCCHHHHH
Q 041882 280 RGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKR-QYK------PDVVTYNILINYLCKEDRAAEAY 341 (491)
Q Consensus 280 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~li~~~~~~~~~~~a~ 341 (491)
.. ......|+-|.-.|++- ++++..+.++..-.+ +++ -....|..++-.|.+-.+++.|.
T Consensus 258 lE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 32 34455566665555554 234433333322111 111 02334666666666666666543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.44 Score=47.42 Aligned_cols=131 Identities=18% Similarity=0.164 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCC-hhhHHHHHHHHHHC------CCCC-CH-
Q 041882 112 TLFISLIQHYGKAHL-VDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDR-VDDAKRMFDDADKM------GFRP-NL- 181 (491)
Q Consensus 112 ~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~------~~~p-~~- 181 (491)
.....++..+...++ .+.|..+|+++...+...+......++..+...++ --+|.+++.+..+. ...+ +.
T Consensus 249 ~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 249 YLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 344556666666666 57788999988775422222222333333333322 22455555444321 1111 11
Q ss_pred ---------HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041882 182 ---------ISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMI 243 (491)
Q Consensus 182 ---------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 243 (491)
...+.-.+.+...|+++.|+++-++..... +-+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122223445677899999999999988763 3367889999999999999999999888873
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=92.30 E-value=1.8e-05 Score=72.20 Aligned_cols=326 Identities=9% Similarity=0.025 Sum_probs=196.2
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHH
Q 041882 76 YPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDI 155 (491)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 155 (491)
+..|..|..+..+.+...+|.+.| .+ ..|+..|..++....+.|.+++-+.++.-..+.. .+...=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy---Ik---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY---IK---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS---CC---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHH---Hh---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 346788888877777777666543 12 2355667777888888888888777776555432 344555677888
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHH
Q 041882 156 LVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKA 235 (491)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 235 (491)
|++.++..+..+++. .|+..-...+.+-|...|.++.|.-+|..+. -|.-|...+.+.|++..|
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHH
Confidence 888887665444432 3666666777777777888777776664332 344455566677777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 041882 236 KGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKR 315 (491)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 315 (491)
.+.-++. -++.||..+-.+|...+.+.-|.-.--.++-. + .....++..|...|-+++.+.+++.-...
T Consensus 190 VdaArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 190 VDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 6543332 26678999999999999988876654444422 1 22335677788999999999999887743
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------CCCC-
Q 041882 316 QYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT------SRHC- 388 (491)
Q Consensus 316 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------~~~~- 388 (491)
-.....+|+.|.-.|++- ++++..+.++..-. +.| .-.++++|.+..-|.++.-++..-.+ .-+.
T Consensus 259 -ErAHmGmFTELaILYsKY-~PeKlmEHlklf~s---riN---ipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h 330 (624)
T 3lvg_A 259 -ERAHMGMFTELAILYSKF-KPQKMREHLELFWS---RVN---IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 330 (624)
T ss_dssp -TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSS---SSC---CTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSC
T ss_pred -CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHH---hcc---HHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhC
Confidence 234778888888888874 45555444443211 111 11357778877777777766554322 1111
Q ss_pred -CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHH
Q 041882 389 -PRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVE 448 (491)
Q Consensus 389 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 448 (491)
++..--..+-+...+.++.+---+.+.--.+. .+...+-|+.++...-+....++.
T Consensus 331 ~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e----~P~lL~DLL~vL~prlDh~RvV~~ 387 (624)
T 3lvg_A 331 PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNY 387 (624)
T ss_dssp HHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTS----CCTTSHHHHHHHCTTCCSTTTHHH
T ss_pred ChhhccHHHHHHHHHHcchHHHHHHHHHHHHHh----ChHHHHHHHHhccccCChHHHHHH
Confidence 12222223334455666666544444443332 222345555544444444434333
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.27 E-value=2.5 Score=42.16 Aligned_cols=127 Identities=13% Similarity=0.082 Sum_probs=75.3
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHc------CCCCCh-----
Q 041882 220 NSLIGFLCRTGE-MGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKG-EYNEAKKMMFDMAYR------GCKPQL----- 286 (491)
Q Consensus 220 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~------~~~~~~----- 286 (491)
..++..+...+. ++.|..+++++.+.....+......++..+...+ +--+|.+++.+..+. ...+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344555555555 4778888888877633222222223333333332 222344444443321 111111
Q ss_pred ------hcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041882 287 ------VNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEM 347 (491)
Q Consensus 287 ------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 347 (491)
.....-.+.+...|+++.|..+-++.....+. +..+|..|..+|...|+++.|+-.+..+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11222244566789999999999988886443 6889999999999999999999888776
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.97 E-value=11 Score=40.18 Aligned_cols=55 Identities=18% Similarity=0.269 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 041882 79 YASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMT 138 (491)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 138 (491)
...++..+...+.++.+.++...+.. ++..--.+..++...|++++|.+.|++..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 44566777788888888776655432 44444567778889999999999998763
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.91 E-value=0.82 Score=41.87 Aligned_cols=73 Identities=8% Similarity=-0.029 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH-----HCCCCCCHHHHHHHH
Q 041882 360 RMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEME-----KRKMRFDLKAWEGLV 433 (491)
Q Consensus 360 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~~ll 433 (491)
..++.++...|+++++...+..+.... +.+...+..+|.++.+.|+..+|.+.|+++. +.|+.|.+.+-...-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 445667777888888888888877653 3467788888888888888888888888765 348888876654443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.50 E-value=2 Score=29.91 Aligned_cols=63 Identities=2% Similarity=0.042 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHH
Q 041882 92 FDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDI 155 (491)
Q Consensus 92 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 155 (491)
.-+.++-++.+......|++.+..+.+++|.+.+++..|.++|+-++..- .....+|..+++-
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqE 88 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHH
Confidence 34455555555555556666666666666666666666666666554321 1123345555444
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.27 E-value=2.7 Score=29.32 Aligned_cols=49 Identities=14% Similarity=0.089 Sum_probs=28.5
Q ss_pred HhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 041882 267 YNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKR 315 (491)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 315 (491)
.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++.++.+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3345555555555555666666666666666666666666666655544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.69 E-value=1.9 Score=39.46 Aligned_cols=74 Identities=12% Similarity=0.063 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHH-----CCCCCCHHhHHHH
Q 041882 113 LFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADK-----MGFRPNLISFNVM 187 (491)
Q Consensus 113 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~~~~~l 187 (491)
+...++..+...|++++|+..+..+.... +.+...|..+|.++...|+..+|++.|+.+.+ .|+.|+..+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34556677778888888888888877654 33777888888888888888888888887644 3888887665433
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=90.62 E-value=17 Score=37.28 Aligned_cols=258 Identities=12% Similarity=0.074 Sum_probs=129.6
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCChHHHHHHHHHHHhCCC-------CCChhhHHHHH
Q 041882 153 LDILVDNDRVDDAKRMFDDADKMGFRPNLI--SFNVMIKGRLKKGEWEEASRVFDEMLEREV-------PPTVVTYNSLI 223 (491)
Q Consensus 153 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~ll 223 (491)
--+....|+.++++.++......+-..+.. .-..+.-+....|..+++..++.......- .+....-.++.
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 444566777788877777655421011222 222333344555555566766666554311 01111222233
Q ss_pred HHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHH--HHHh
Q 041882 224 GFLCRTGE-MGKAKGLFEDMIKKGTYPNAVTYA--LLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMS--DLGK 298 (491)
Q Consensus 224 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~ 298 (491)
-+.+-.|. -+++.+.+..+....- +...... .+...+...|+.+....++..+.+.. +......+.. ++..
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 33333332 2345555555554311 1111122 22333456677777777777666532 2223333333 3346
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHH-HH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 041882 299 RGKIEEAKSLLSEMKKRQYKPDVVT-YN---ILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEG 374 (491)
Q Consensus 299 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 374 (491)
.|+.+.+..+.+.+... .++.. |. ++..+|+..|+.....+++..+.... ..+......+.-++...|+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 537 YGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp TTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSS
T ss_pred CCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHH
Confidence 67777777777777664 13222 22 33445667778777777887777531 2222222233334555677666
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCH-HHHHHHHHHHHH
Q 041882 375 SLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKV-DDACFVLEEMEK 419 (491)
Q Consensus 375 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 419 (491)
+.++++.+.+.+ .|....-..+.-+....|.. .++..++..+..
T Consensus 613 v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 613 VPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 777776666543 34444444444455545443 567777777764
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.07 E-value=12 Score=34.82 Aligned_cols=187 Identities=12% Similarity=0.126 Sum_probs=88.1
Q ss_pred CChhhHHHHHHHHHHC-----CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCChhhHHHHHHHH----Hhc
Q 041882 160 DRVDDAKRMFDDADKM-----GFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLER-EVPPTVVTYNSLIGFL----CRT 229 (491)
Q Consensus 160 ~~~~~a~~~~~~~~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~----~~~ 229 (491)
|+++.|++.+..+.+. ...........++..|...++++...+.+..+... |.. ......++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcC
Confidence 6677777776665532 22334555667777888888888777766655443 222 12222233222 122
Q ss_pred CChhHHH--HHHHHHHH--cC-CCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-----hhcHHHHHHHH
Q 041882 230 GEMGKAK--GLFEDMIK--KG-TYPN---AVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQ-----LVNFGVLMSDL 296 (491)
Q Consensus 230 ~~~~~a~--~~~~~~~~--~~-~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~ 296 (491)
...+.-. .+.+.... .| +... ......+...+...|++.+|.+++..+...-...+ ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2222111 11111100 01 1111 11223455556666666666666666553211111 22344445556
Q ss_pred HhcCChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041882 297 GKRGKIEEAKSLLSEMKKR----QYKPD--VVTYNILINYLCKEDRAAEAYKVLTEMQ 348 (491)
Q Consensus 297 ~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~ 348 (491)
...+++..|..++.++... ...|+ ...+...+..+...+++.+|.+.|.++.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6666666666666655321 11111 1234445555555666666665555543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.57 E-value=4.7 Score=29.81 Aligned_cols=62 Identities=16% Similarity=0.152 Sum_probs=37.7
Q ss_pred HhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 041882 267 YNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILIN 329 (491)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 329 (491)
.-+..+-++.+...++.|++....+.+.+|.+.+|+..|.++|+-++.+- .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 33455555666666667777777777777777777777777777666542 223344555543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.28 E-value=4.2 Score=30.06 Aligned_cols=62 Identities=2% Similarity=0.055 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHH
Q 041882 93 DAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDI 155 (491)
Q Consensus 93 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 155 (491)
-+.++-++.+...+..|++.+..+.+++|.+.+++..|.++|+-++..- .+....|..+++-
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE 131 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence 3455555555555556666666666666666666666666666654331 1223345555544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=87.11 E-value=29 Score=35.56 Aligned_cols=26 Identities=12% Similarity=0.295 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhh
Q 041882 114 FISLIQHYGKAHLVDKAIEVFNRMTS 139 (491)
Q Consensus 114 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 139 (491)
|..++.+..+.++.+.+.++|.++..
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56677777888888888888888764
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.77 E-value=3.8 Score=31.74 Aligned_cols=60 Identities=8% Similarity=0.008 Sum_probs=45.4
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCC-CCCCH-------HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMG-SKHSY-------PSYASLIYKLARARDFDAVETVLGYIQD 104 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~-~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 104 (491)
..-++.+...+.++.|..+.+.+.... ..++. .++..+..++...|+|..|...|+...+
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 567788899999999999988765321 22331 2567777889999999999999998654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.42 E-value=13 Score=39.44 Aligned_cols=147 Identities=12% Similarity=0.041 Sum_probs=85.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH--------------------c
Q 041882 186 VMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIK--------------------K 245 (491)
Q Consensus 186 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------------------~ 245 (491)
.++..+...+.++.+.++...... +...--.+..+|...|++++|.+.|++... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 455556666666666554433222 333444556667777777777777755311 0
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCh----hcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 041882 246 --GTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQL----VNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKP 319 (491)
Q Consensus 246 --~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 319 (491)
....-..-|..++..+.+.+.++.+.++-...++.....+. ..|..+..++...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 00112345666777777777777777776665554322221 2466677777788888888777777665433
Q ss_pred CHHHHHHHHHHHHhcCCHHH
Q 041882 320 DVVTYNILINYLCKEDRAAE 339 (491)
Q Consensus 320 ~~~~~~~li~~~~~~~~~~~ 339 (491)
-......++...+..|..+.
T Consensus 970 r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHhCCChhh
Confidence 34556666666665555443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=86.21 E-value=8.5 Score=28.51 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 041882 353 KPNAATYRMMVDGFLRVED---FEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFD 425 (491)
Q Consensus 353 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 425 (491)
.|+..+--.+..++++..+ ..+++.+++.+.+.+..-....+-.+.-++.+.|++++|.++.+.+.+. .|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 5666665556666666554 3456677777766541123445556667777788888888877777753 554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=85.85 E-value=27 Score=34.01 Aligned_cols=78 Identities=6% Similarity=-0.025 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 041882 113 LFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRL 192 (491)
Q Consensus 113 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 192 (491)
.-..-+..+.+.+++...+.++.. .+.+...-.....+....|+..+|......+-..| ......+..++..+.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~ 147 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWR 147 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHH
Confidence 334445555666666655554332 12355555556666666666666665555554443 223344555555555
Q ss_pred hcCC
Q 041882 193 KKGE 196 (491)
Q Consensus 193 ~~~~ 196 (491)
+.|.
T Consensus 148 ~~g~ 151 (618)
T 1qsa_A 148 ASGK 151 (618)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 4443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.67 E-value=6.1 Score=30.61 Aligned_cols=117 Identities=11% Similarity=-0.021 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHH
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKR-QYKPD-------VVTYNILINYLCKEDRAAEAYKVLTEMQIGG--CKPNAAT 358 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~ 358 (491)
+..-+..+...+.++.|+-+.+.+... +..|+ ..++..+.+++...+++.+|...|++.+... +.-+..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 334455556666666666665554332 11122 1234455566666666666666666653321 1111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041882 359 YRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEME 418 (491)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (491)
...+.. . ..... ......+...---+..+|.+.|++++|+.+++.+.
T Consensus 103 ~~~~~~---~-ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 103 RPSTGN---S-ASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cccccc---c-CCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 111100 0 00000 00112233444457778888888888888888654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.53 E-value=12 Score=28.08 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 041882 353 KPNAATYRMMVDGFLRVED---FEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFD 425 (491)
Q Consensus 353 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 425 (491)
.|+..+--....++++..+ ..+++.+++.+...+..-.....-.+.-++.+.|++++|.++.+.+.+. +|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 4555555555566665544 3456666666666432223344455666777777777777777777763 454
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=83.11 E-value=23 Score=30.92 Aligned_cols=163 Identities=12% Similarity=0.018 Sum_probs=80.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHH----HHHHHHHCCCCCCHHhHHHHHHHHH
Q 041882 117 LIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKR----MFDDADKMGFRPNLISFNVMIKGRL 192 (491)
Q Consensus 117 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~----~~~~~~~~~~~p~~~~~~~ll~~~~ 192 (491)
+..-|.+.+++++|++++..-.. .+.+.|+...|-+ +++-+.+.+.+++......++..+.
T Consensus 39 l~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 39 IANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34445666777777766544321 2223344443333 2334444566666666666665554
Q ss_pred hcCChH-HHHHHHHHHH----hCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-
Q 041882 193 KKGEWE-EASRVFDEML----ERE--VPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFK- 264 (491)
Q Consensus 193 ~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~- 264 (491)
....-+ .-.++++.+. +.| ..-++..+..+...|.+.|++.+|...|-.- -.-+...+..++.-+...
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~----~~~s~~~~a~~l~~w~~~~ 179 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG----THDSMIKYVDLLWDWLCQV 179 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS----CHHHHHHHHHHHHHHHHHT
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCccHHHHHHHHHHHHHhc
Confidence 432111 1122333332 121 2236677778888888888888877766421 111344454444433333
Q ss_pred --CCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 041882 265 --GEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMK 313 (491)
Q Consensus 265 --~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 313 (491)
|...++ +...-.+++ -|...++...|..+++...
T Consensus 180 ~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 180 DDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp TCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred CCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 332222 111122222 3445677777777777654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=83.06 E-value=12 Score=27.69 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=29.1
Q ss_pred ChhhHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 041882 215 TVVTYNSLIGFLCRTGEM---GKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 215 ~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (491)
+..+--....++.++.+. .+++.+++++.+.+..-....+-.+.-++.+.|+++.|.+..+.+.+.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 444444444444444433 234445555444332112233333444455555555555555555543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=82.49 E-value=5.2 Score=33.88 Aligned_cols=58 Identities=16% Similarity=0.079 Sum_probs=40.8
Q ss_pred HHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 041882 48 VNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFN 106 (491)
Q Consensus 48 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 106 (491)
+..+.+.|++++|+.....-++.. +-|...-..+++.+|-.|+|+.|.+-++...+..
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 445667777777777777766654 5566666777777777777777777777766654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.49 E-value=16 Score=33.77 Aligned_cols=60 Identities=5% Similarity=0.015 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHC--CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 041882 148 SFNSLLDILVDNDRVDDAKRMFDDADKM--GFRPNLISFNVMIKGRLKKGEWEEASRVFDEM 207 (491)
Q Consensus 148 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 207 (491)
++..+...|.+.|+++.|.+.|.++... +...-...+-..++.+...+++..+...+.++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444555555555555555555555443 11222334444555555555555555555544
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.34 E-value=16 Score=29.31 Aligned_cols=57 Identities=14% Similarity=-0.013 Sum_probs=43.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 041882 369 VEDFEGSLKVLNAMLTSRHCP-RLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFD 425 (491)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 425 (491)
.++...+..+|..|...|+-- -...|......+...|++.+|.++|+.-++.+-+|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 444678888888888876543 456777888888888888888888888888877774
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 491 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.64 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.63 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.29 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.29 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.25 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.23 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.22 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.21 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.2 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.08 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.06 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.06 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.64 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.63 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.59 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.59 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.57 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.5 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.48 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.47 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.41 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.37 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.37 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.34 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.29 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.29 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.28 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.24 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.2 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.05 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.01 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.98 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.96 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.93 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.82 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.82 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.82 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.81 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.79 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.77 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.74 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.72 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.71 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.67 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.61 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.61 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.6 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.56 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.09 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.95 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.86 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.54 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.31 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.21 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.17 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.1 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.98 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.19 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.09 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.67 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.99 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.62 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=8.9e-23 Score=189.26 Aligned_cols=378 Identities=12% Similarity=0.023 Sum_probs=172.0
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHH
Q 041882 87 ARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAK 166 (491)
Q Consensus 87 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 166 (491)
.+.|++++|.+.++.+.+.. |.+...+..+...+.+.|++++|+..|++..+.++ .+..+|..+..++...|++++|+
T Consensus 10 ~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~~~~A~ 87 (388)
T d1w3ba_ 10 YQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhccccccc
Confidence 34444444444444444332 22334444444444444444444444444433321 13344444444444444444444
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041882 167 RMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKG 246 (491)
Q Consensus 167 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 246 (491)
..+....+... .+..............+....+............. ...............+....+...+.......
T Consensus 88 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T d1w3ba_ 88 EHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred ccccccccccc-ccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHHhhccC
Confidence 44444443321 12222222222333333333333333332222111 22233333333444444444444444444332
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 041882 247 TYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNI 326 (491)
Q Consensus 247 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 326 (491)
. -+...+..+...+...|+++.|...+....+.. +-+...+..+...+...|++++|...++.....+.. +...+..
T Consensus 166 ~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 242 (388)
T d1w3ba_ 166 P-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGN 242 (388)
T ss_dssp T-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred c-chhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHHH
Confidence 1 133344444444445555555555555444432 222334444445555555555555555555444332 4444455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCC
Q 041882 327 LINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGK 406 (491)
Q Consensus 327 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 406 (491)
+...+.+.|++++|...|++..+.. +-+..++..+...+...|++++|.+.++...... +.+...+..+...+...|+
T Consensus 243 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 320 (388)
T d1w3ba_ 243 LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCC
Confidence 5555555555555555555554432 2334455555555555555555555555555432 2344455555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHhhhhhhhhhhHHHHHHHHHhcCCC
Q 041882 407 VDDACFVLEEMEKRKMRFDLKAWEGLVTDACIGDGNAGGLVEIRDMRDYSMAISSVMNVVDLLWTYLGMG 476 (491)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~g 476 (491)
+++|...+++..+.. +-+...|..+..++...|+.++|+..+++..+. .|++...+..+|.+|.++|
T Consensus 321 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 321 IEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 555555555555431 113444555555555555555555555544433 3555566666666665555
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4e-22 Score=184.81 Aligned_cols=384 Identities=15% Similarity=0.041 Sum_probs=320.3
Q ss_pred chHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 041882 46 PFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAH 125 (491)
Q Consensus 46 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 125 (491)
.+...+.+.|++++|++.|+++.+.. +.+...+..+...+.+.|++++|.+.++.+.+.+ |.+..++..+...+.+.|
T Consensus 4 ~la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 4 ELAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhc
Confidence 45667788999999999999998754 5578889999999999999999999999999886 667889999999999999
Q ss_pred CHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 041882 126 LVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFD 205 (491)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 205 (491)
++++|+..+......... +...+..........+....+............ ................+....+...+.
T Consensus 82 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred cccccccccccccccccc-ccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHH
Confidence 999999999999876533 556666666666667777777776666655432 344555566667778888888888888
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 041882 206 EMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQ 285 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 285 (491)
....... -+...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...+......+ +.+
T Consensus 160 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 236 (388)
T d1w3ba_ 160 KAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HhhccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhH
Confidence 8777543 36778888999999999999999999999886433 67788899999999999999999999998875 456
Q ss_pred hhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041882 286 LVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDG 365 (491)
Q Consensus 286 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 365 (491)
...+..+...+.+.|++++|...|+++.+..+. +..++..+...+...|++++|.+.++...... +.+...+..+...
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 314 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHH
Confidence 677888889999999999999999999987655 78889999999999999999999999987754 6777888899999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 041882 366 FLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRF-DLKAWEGLVTDACIGDG 441 (491)
Q Consensus 366 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~ 441 (491)
+...|++++|+..|++.++.. +.+..++..+..+|.+.|++++|...|++..+. .| +...|..+..++.+.|+
T Consensus 315 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999998853 235778889999999999999999999999864 45 46788888887766654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2.1e-13 Score=122.12 Aligned_cols=224 Identities=12% Similarity=0.011 Sum_probs=110.9
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhh
Q 041882 85 KLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDD 164 (491)
Q Consensus 85 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 164 (491)
.+.+.|++++|...|+.+.+.. |.+..+|..+..++...|++++|+..|++..+... -+...|..+..++...|++++
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~ 105 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQ 105 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccccccccc
Confidence 3444444555555554444443 33344444444444444555555544444444321 134444444444444555555
Q ss_pred HHHHHHHHHHCCCCCCHH----------------hHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCChhhHHHHHHHHH
Q 041882 165 AKRMFDDADKMGFRPNLI----------------SFNVMIKGRLKKGEWEEASRVFDEMLEREV-PPTVVTYNSLIGFLC 227 (491)
Q Consensus 165 a~~~~~~~~~~~~~p~~~----------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~ 227 (491)
|.+.+++..... |+.. .....+..+...+.+.++.+.|....+... ..+...+..+...+.
T Consensus 106 A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~ 183 (323)
T d1fcha_ 106 ACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 183 (323)
T ss_dssp HHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred cccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 555444444321 1110 001111222333445556666655544321 223445556666666
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHH
Q 041882 228 RTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKS 307 (491)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 307 (491)
..|++++|+..|++....... +..+|..+..++...|++++|.+.++...+.. +-+...+..+..+|.+.|++++|..
T Consensus 184 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~ 261 (323)
T d1fcha_ 184 LSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVE 261 (323)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHH
Confidence 666666666666666554322 45556666666666666666666666665542 2334455556666666666666666
Q ss_pred HHHHHHH
Q 041882 308 LLSEMKK 314 (491)
Q Consensus 308 ~~~~~~~ 314 (491)
.|++..+
T Consensus 262 ~~~~al~ 268 (323)
T d1fcha_ 262 HFLEALN 268 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.4e-13 Score=121.75 Aligned_cols=230 Identities=14% Similarity=0.055 Sum_probs=187.0
Q ss_pred hHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041882 47 FVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHL 126 (491)
Q Consensus 47 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 126 (491)
....+.+.|++++|+..|+++.+.. +.+..+|..+..++...|+++.|...+....+.. +.+...+..+...+...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 4456788999999999999999865 5578899999999999999999999999999876 5678899999999999999
Q ss_pred HHHHHHHHHHhhhCCCCc--------------CHHHHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCCHHhHHHHHHHH
Q 041882 127 VDKAIEVFNRMTSFDCVR--------------TLQSFNSLLDILVDNDRVDDAKRMFDDADKMG-FRPNLISFNVMIKGR 191 (491)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~--------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~ll~~~ 191 (491)
+++|.+.+++........ +.......+..+...+.+.++...|.+..+.. -..+...+..+...+
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 999999999987653210 00011122233444566788888888877653 234567788888899
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 041882 192 LKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAK 271 (491)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 271 (491)
...|++++|...|+........ +...|..+..+|...|++++|++.|++..+.... +..++..+..+|.+.|++++|+
T Consensus 183 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~ 260 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAV 260 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999998876433 6888999999999999999999999999886433 6778999999999999999999
Q ss_pred HHHHHHHHc
Q 041882 272 KMMFDMAYR 280 (491)
Q Consensus 272 ~~~~~~~~~ 280 (491)
..|++.++.
T Consensus 261 ~~~~~al~l 269 (323)
T d1fcha_ 261 EHFLEALNM 269 (323)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=2.7e-09 Score=94.10 Aligned_cols=197 Identities=10% Similarity=0.025 Sum_probs=129.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCcCHHHHHHHHHHH
Q 041882 78 SYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAH-LVDKAIEVFNRMTSFDCVRTLQSFNSLLDIL 156 (491)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 156 (491)
+++.+...+.+.+.+++|+++++.+++.+ |-+..+|+....++...| ++++|+..+++....... +..+|+.+..++
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHH
Confidence 44555555666677777777777777776 556677777777766655 477777777777665533 677777777777
Q ss_pred HhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-----
Q 041882 157 VDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGE----- 231 (491)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----- 231 (491)
...|++++|+..++++.+.. +-+...|..+..++.+.|++++|++.++.+.+.+.. +...|+.+..++.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhh
Confidence 77777777777777777653 225667777777777777777777777777776443 56666666666555554
Q ss_pred -hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 041882 232 -MGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 232 -~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (491)
+++|++.+...++.... +...|..+...+.. ...+++...++...+.
T Consensus 201 ~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDL 248 (315)
T ss_dssp HHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHh
Confidence 45677777776665332 55566555444433 3345666666666554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.6e-09 Score=95.63 Aligned_cols=148 Identities=7% Similarity=0.034 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 041882 147 QSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKG-EWEEASRVFDEMLEREVPPTVVTYNSLIGF 225 (491)
Q Consensus 147 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 225 (491)
.+|+.+..++.+.+.+++|+++++++++.. +-+...|+....++...| ++++|+..++...+.... +..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence 445555555555566666666666665543 113344555555555544 356666666665554333 55556666666
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHh
Q 041882 226 LCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGK 298 (491)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (491)
+.+.|++++|+..++++.+.... +...|..+...+...|++++|...++.+++.+ +.+...|+.+..++.+
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~ 192 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISN 192 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHH
Confidence 66666666666666666554322 45555555555555566666665555555543 2333444444433333
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=9.7e-09 Score=92.19 Aligned_cols=267 Identities=11% Similarity=-0.000 Sum_probs=117.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCcC----HHHHHHHHHHHHhCCChhhHHHHHHHHHHCCC-CCC----HHhHHHHH
Q 041882 118 IQHYGKAHLVDKAIEVFNRMTSFDCVRT----LQSFNSLLDILVDNDRVDDAKRMFDDADKMGF-RPN----LISFNVMI 188 (491)
Q Consensus 118 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll 188 (491)
...+...|++++|++++++........+ ..++..+..++...|++++|+..|++..+... .++ ...+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3344455555555555555444321111 12344445555555555555555555433210 001 12233344
Q ss_pred HHHHhcCChHHHHHHHHHHHhC----CCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCCHHHHHHH
Q 041882 189 KGRLKKGEWEEASRVFDEMLER----EVPP---TVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKG----TYPNAVTYALL 257 (491)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l 257 (491)
..+...|++..+...+...... +... ....+..+...+...|+++.+...+....... .......+...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 4455555555555555544321 1110 11233344455555566666666555554321 11122333444
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCC--CCC----hhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHH
Q 041882 258 MEGLCFKGEYNEAKKMMFDMAYRGC--KPQ----LVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKP---DVVTYNILI 328 (491)
Q Consensus 258 l~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li 328 (491)
...+...++...+...+........ ... ...+..+...+...|+.+.|...+....+..... ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 4445555555555555444332110 000 1122333444455555555555555544332211 122334445
Q ss_pred HHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 329 NYLCKEDRAAEAYKVLTEMQI----GGCKPN-AATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 329 ~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
.++...|++++|...+++... .+..|+ ..++..+...+...|++++|.+.+++.++
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555556666666655555432 122222 22344445555555666666655555443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.23 E-value=3.5e-09 Score=93.20 Aligned_cols=188 Identities=11% Similarity=0.021 Sum_probs=140.8
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHH
Q 041882 231 EMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLS 310 (491)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 310 (491)
..++|..+|++..+...+.+...+...+......|+.+.|..+|+.+.+.........|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45678888888876544446667777778888888889998888888865422234467788888888889999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC
Q 041882 311 EMKKRQYKPDVVTYNILINY-LCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSR-HC 388 (491)
Q Consensus 311 ~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~ 388 (491)
.+.+..+. +...|...... +...|+.+.|..+|+.+... .+.+...|...+..+...|+++.|..+|++.+... ..
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 88877554 34444443332 34468899999999988875 25567788888888889999999999999988863 33
Q ss_pred CC--HHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 389 PR--LETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 389 ~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
|+ ...|..++..-...|+.+.+..+++++.+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 32 457888888878889999999999988653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=2e-08 Score=90.13 Aligned_cols=272 Identities=15% Similarity=0.050 Sum_probs=193.0
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CCChhh
Q 041882 148 SFNSLLDILVDNDRVDDAKRMFDDADKMGFRPN----LISFNVMIKGRLKKGEWEEASRVFDEMLEREV-----PPTVVT 218 (491)
Q Consensus 148 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~ 218 (491)
.......++...|++++|++++++..+.....+ ...+..+..++...|++++|...|+...+... ......
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 444456677889999999999999887632211 23566777889999999999999998765321 111345
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC----CChh
Q 041882 219 YNSLIGFLCRTGEMGKAKGLFEDMIKK----GTYP---NAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCK----PQLV 287 (491)
Q Consensus 219 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~ 287 (491)
+..+...+...|++..+...+...... +... ....+..+...+...|+++.+...+......... ....
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 566777888999999999998887642 1111 1234556677888999999999999888765322 2233
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHH
Q 041882 288 NFGVLMSDLGKRGKIEEAKSLLSEMKKR--QYKPD----VVTYNILINYLCKEDRAAEAYKVLTEMQIGGCK---PNAAT 358 (491)
Q Consensus 288 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~ 358 (491)
.+......+...++...+...+...... ..... ...+..+...+...|++++|...+++....... .....
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 4455666777889999988888766542 11111 234566667788899999999999887654322 22345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 359 YRMMVDGFLRVEDFEGSLKVLNAMLTS----RHCP-RLETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
+..+..++...|++++|...++++... +..| ....+..+..+|.+.|++++|.+.+++..+
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566788899999999999999988642 3333 345677888999999999999999998764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.21 E-value=4.8e-09 Score=92.30 Aligned_cols=187 Identities=11% Similarity=0.058 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 041882 127 VDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDE 206 (491)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 206 (491)
.++|..+|++......+.+...|...+......|+++.|..+|+.+.+.........|...+..+.+.|+++.|.++|+.
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 45566666666554333455566666666666666666666666666543222233566666666666667777777766
Q ss_pred HHhCCCCCChhhHHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCC
Q 041882 207 MLEREVPPTVVTYNSLIGF-LCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRG-CKP 284 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~ 284 (491)
+.+.+.. +...|...... +...|+.+.|..+|+.+.+. .+.+...|...+..+...|+.+.|..+|++..... ..|
T Consensus 160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 6655332 33333333332 23356667777777776665 22355666666666667777777777777766543 222
Q ss_pred C--hhcHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 041882 285 Q--LVNFGVLMSDLGKRGKIEEAKSLLSEMKKR 315 (491)
Q Consensus 285 ~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 315 (491)
+ ...|...+..-...|+.+.+..+++++.+.
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 234566666666667777777777766553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.20 E-value=1.6e-10 Score=103.44 Aligned_cols=249 Identities=10% Similarity=-0.016 Sum_probs=158.8
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH----------HhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCC
Q 041882 91 DFDAVETVLGYIQDFNIRCKETLFISLIQHY----------GKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDND 160 (491)
Q Consensus 91 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 160 (491)
..++|.++++.+.+.+ |-+...|+..-..+ ...|.+++|+.+++.....++ .+...|..+..++...+
T Consensus 44 ~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p-k~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC-CcHHHHHHhhHHHHHhc
Confidence 3467888888877765 44555554333222 233457788888888877653 37777777777776655
Q ss_pred --ChhhHHHHHHHHHHCCCCCCHHhHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 041882 161 --RVDDAKRMFDDADKMGFRPNLISFN-VMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKG 237 (491)
Q Consensus 161 --~~~~a~~~~~~~~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 237 (491)
++++|...+..+.+.. +++...+. .....+...+.++.|+..++.+.+.+.. +...|+.+..++.+.|++++|..
T Consensus 122 ~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHH
Confidence 4778888888887753 22444443 3345666778888888888888877554 77788888888888888887765
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 041882 238 LFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQY 317 (491)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 317 (491)
.++...+. .... ......+...+..+++...+....... +++...+..+...+...++.++|...+.+..+.++
T Consensus 200 ~~~~~~~~----~~~~-~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 273 (334)
T d1dcea1 200 QGRLPENV----LLKE-LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPENK 273 (334)
T ss_dssp CCSSCHHH----HHHH-HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhHHh----HHHH-HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 55544332 1111 122333445566666666666666553 34444455555666666777777777777666533
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 318 KPDVVTYNILINYLCKEDRAAEAYKVLTEMQIG 350 (491)
Q Consensus 318 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 350 (491)
. +...+..+..+|...|++++|.+.+++..+.
T Consensus 274 ~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 274 W-CLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp H-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred h-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3 4556666777777777777777777777663
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=1.6e-09 Score=92.93 Aligned_cols=218 Identities=10% Similarity=-0.089 Sum_probs=134.1
Q ss_pred CChHHHHHHHHHhhhCCCCC---CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041882 55 RDPDEALSLFHRHHQMGSKH---SYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAI 131 (491)
Q Consensus 55 ~~~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 131 (491)
.+.+.|+..+++........ ...+|..+...+.+.|++++|.+.|+...+.. |.++.++..+..++.+.|++++|+
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhh
Confidence 45566777777766543211 22356677788888999999999999988876 667888889999999999999999
Q ss_pred HHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041882 132 EVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLERE 211 (491)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 211 (491)
+.|++....+.. +..++..+..++...|++++|...|+...+.. +.+......+..++.+.+..+.+..+........
T Consensus 92 ~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (259)
T d1xnfa_ 92 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 169 (259)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred hhhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Confidence 999998876533 56788888888889999999999998887763 2234443334444555555555555555554432
Q ss_pred CCCChhhHHHHHHHHHhcCChh----HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 041882 212 VPPTVVTYNSLIGFLCRTGEMG----KAKGLFEDMIKKGTYP-NAVTYALLMEGLCFKGEYNEAKKMMFDMAYR 280 (491)
Q Consensus 212 ~~~~~~~~~~ll~~~~~~~~~~----~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (491)
. +...++ ++..+....... .+...+...... .| ...++..+...+...|++++|...|+..+..
T Consensus 170 ~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 170 K--EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp C--CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred h--hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 1 222222 222222111111 111111111110 01 1234455666666777777777777766654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.06 E-value=6.4e-10 Score=99.45 Aligned_cols=266 Identities=11% Similarity=-0.046 Sum_probs=191.9
Q ss_pred CChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHH----------hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 041882 55 RDPDEALSLFHRHHQMGSKHSYPSYASLIYKLA----------RARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA 124 (491)
Q Consensus 55 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~----------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (491)
+..++|+.+++...+.+ |.+...|+..-..+. ..|++++|...++.+.+.+ +.+...+..+..++...
T Consensus 43 ~~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (334)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHh
Confidence 34589999999998754 334445544333322 3345788999999998876 66788888888777776
Q ss_pred C--CHHHHHHHHHHhhhCCCCcCHHHHHH-HHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 041882 125 H--LVDKAIEVFNRMTSFDCVRTLQSFNS-LLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEAS 201 (491)
Q Consensus 125 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 201 (491)
+ ++++|+..+.++..... ++...+.. ....+...+.+++|+..++.+.+... -+...|+.+..++...|++++|.
T Consensus 121 ~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~ 198 (334)
T d1dcea1 121 PEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSG 198 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHH
Confidence 5 48999999999987653 35666654 45677778999999999999888753 36788888999999999998887
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 041882 202 RVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRG 281 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 281 (491)
..+...... ... .......+...+..+++...+........ ++...+..+...+...++..+|...+.......
T Consensus 199 ~~~~~~~~~----~~~-~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 272 (334)
T d1dcea1 199 PQGRLPENV----LLK-ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCKELQELEPEN 272 (334)
T ss_dssp SCCSSCHHH----HHH-HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhHHh----HHH-HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 666554442 111 12233445667778888888888877643 344455666777788889999999988877664
Q ss_pred CCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 041882 282 CKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLC 332 (491)
Q Consensus 282 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 332 (491)
+.+...+..+..++...|+.++|...++.+.+.++. +..-|+.+...+.
T Consensus 273 -p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~-~~~y~~~L~~~~~ 321 (334)
T d1dcea1 273 -KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLRSKFL 321 (334)
T ss_dssp -HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHh
Confidence 334566778888899999999999999999886432 4456666655554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=1.4e-08 Score=86.70 Aligned_cols=195 Identities=13% Similarity=-0.052 Sum_probs=87.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHH
Q 041882 218 TYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLG 297 (491)
Q Consensus 218 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 297 (491)
+|..+..+|.+.|++++|+..|++.++.... +..+|..+..++...|++++|+..|++..+.. +.+..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 3444455555555555555555555544222 44555555555555555555555555555543 223344445555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----HH
Q 041882 298 KRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVED----FE 373 (491)
Q Consensus 298 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----~~ 373 (491)
..|++++|...|+...+..+. +......+..++.+.+..+.+..+........ ++...+. ++..+..... .+
T Consensus 117 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHHH
Confidence 555555555555555554322 33333333333333343333333333333321 1111111 1111111111 11
Q ss_pred HHHHHHHHHHhCCCCC-CHHhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041882 374 GSLKVLNAMLTSRHCP-RLETFSCLLVGLLKGGKVDDACFVLEEMEKR 420 (491)
Q Consensus 374 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (491)
.+...+...... .| ...+|..+...|...|++++|...|++....
T Consensus 193 ~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 193 RLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 111111111110 01 1234555667777777777777777777654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=1.3e-06 Score=70.08 Aligned_cols=135 Identities=14% Similarity=-0.012 Sum_probs=80.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 041882 295 DLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEG 374 (491)
Q Consensus 295 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 374 (491)
.+...|+++.|.+.|..+ ..|+..+|..+..+|...|++++|++.|++.++.. +-+...|..+..++.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence 344566666666666543 22455566666666666666666666666666543 3445566666666666666666
Q ss_pred HHHHHHHHHhCCC--------------CC-CHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041882 375 SLKVLNAMLTSRH--------------CP-RLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVT 434 (491)
Q Consensus 375 a~~~~~~~~~~~~--------------~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 434 (491)
|...|++.+.... .. ...++..+..++.+.|++++|.+.++...+....++.......+.
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~ 163 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAME 163 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHH
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHH
Confidence 6666666654210 00 124455677778888888888888888876555443333333333
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=1.2e-06 Score=70.46 Aligned_cols=81 Identities=11% Similarity=0.057 Sum_probs=41.2
Q ss_pred hhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041882 52 KEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAI 131 (491)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 131 (491)
...|+++.|++.|+.+ .++++.+|..+...+...|+++.|.+.|+...+.+ +.+...|..+..++.+.|++++|+
T Consensus 16 ~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 16 ADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 3445555555555432 13344445555555555555555555555555544 344455555555555555555555
Q ss_pred HHHHHh
Q 041882 132 EVFNRM 137 (491)
Q Consensus 132 ~~~~~~ 137 (491)
..|++.
T Consensus 91 ~~~~kA 96 (192)
T d1hh8a_ 91 KDLKEA 96 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.59 E-value=2.3e-06 Score=73.93 Aligned_cols=196 Identities=10% Similarity=-0.040 Sum_probs=105.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC---CC--ChhcHHHH
Q 041882 223 IGFLCRTGEMGKAKGLFEDMIKK----GTYP-NAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGC---KP--QLVNFGVL 292 (491)
Q Consensus 223 l~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l 292 (491)
...|...|++++|.+.|.+..+. +-.+ -..+|..+..+|.+.|++++|...++...+... .+ ...++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 45566777777777777766542 1111 124566666777777777777777665543210 00 12233444
Q ss_pred HHHHHh-cCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCH-HHHH
Q 041882 293 MSDLGK-RGKIEEAKSLLSEMKKR----QYKP-DVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCK-----PNA-ATYR 360 (491)
Q Consensus 293 l~~~~~-~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~-~~~~ 360 (491)
...|.. .|++++|.+.+++..+. +..+ -..++..+...+...|++++|...|+++...... ... ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 444533 47777777777665432 1111 1234666677777777777777777776654211 111 1223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC---HHhHHHHHHHHHc--CCCHHHHHHHHHHHH
Q 041882 361 MMVDGFLRVEDFEGSLKVLNAMLTSRHC-PR---LETFSCLLVGLLK--GGKVDDACFVLEEME 418 (491)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~--~g~~~~a~~~~~~~~ 418 (491)
..+..+...|+++.|...+++..+.... ++ ......++.++.. .+.+++|+..|+.+.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 3444555667777777777777654211 11 2234445555544 234666666665444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.59 E-value=1.5e-06 Score=75.10 Aligned_cols=164 Identities=9% Similarity=0.031 Sum_probs=76.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcC----CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC-CcCHHHHH
Q 041882 81 SLIYKLARARDFDAVETVLGYIQDFN----IR-CKETLFISLIQHYGKAHLVDKAIEVFNRMTSF----DC-VRTLQSFN 150 (491)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 150 (491)
.....|...+++++|.+.|..+.+.. -+ .-..+|..+..+|.+.|++++|++.+++.... +. .....++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 33455666666666666666554421 01 11245566666666666666666666554331 10 00123344
Q ss_pred HHHHHHHh-CCChhhHHHHHHHHHHC----CCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh------hh
Q 041882 151 SLLDILVD-NDRVDDAKRMFDDADKM----GFRP-NLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTV------VT 218 (491)
Q Consensus 151 ~ll~~~~~-~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~ 218 (491)
.+...|.. .|++++|+..+.+..+. +..+ -..++..+...+...|++++|.+.|+++......... ..
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 44444433 35666666665554321 1000 0223444555555555555555555555443211110 11
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 041882 219 YNSLIGFLCRTGEMGKAKGLFEDMIK 244 (491)
Q Consensus 219 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 244 (491)
+...+..+...|+++.|...+++..+
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 22233344445555555555555544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=1.1e-06 Score=64.11 Aligned_cols=92 Identities=15% Similarity=0.094 Sum_probs=58.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCC
Q 041882 82 LIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDR 161 (491)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 161 (491)
-...+.+.|++++|...|+.+.+.. |.+...|..+..++...|++++|+..+++....+. .+...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHccC
Confidence 3455566666666666666666655 55566666666666666666666666666665542 356666666666666666
Q ss_pred hhhHHHHHHHHHHC
Q 041882 162 VDDAKRMFDDADKM 175 (491)
Q Consensus 162 ~~~a~~~~~~~~~~ 175 (491)
+++|+..|++..+.
T Consensus 87 ~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=4.6e-06 Score=60.68 Aligned_cols=87 Identities=17% Similarity=0.077 Sum_probs=36.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041882 296 LGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGS 375 (491)
Q Consensus 296 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 375 (491)
+.+.|++++|+..|++..+..+. +...|..+..+|...|++++|+..+.+..+.. +.+...|..+..++...|++++|
T Consensus 13 ~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~A 90 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEA 90 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHHH
Confidence 33444444444444444443332 34444444444444444444444444444332 33333444444444444444444
Q ss_pred HHHHHHHHh
Q 041882 376 LKVLNAMLT 384 (491)
Q Consensus 376 ~~~~~~~~~ 384 (491)
+..|++.++
T Consensus 91 ~~~~~~a~~ 99 (117)
T d1elwa_ 91 KRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.48 E-value=1.5e-06 Score=70.46 Aligned_cols=99 Identities=14% Similarity=0.093 Sum_probs=67.4
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHH
Q 041882 74 HSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLL 153 (491)
Q Consensus 74 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 153 (491)
|+...+......+.+.|+++.|...|+...... |.+..+|..+..+|.+.|++++|+..|++....++. +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 555566666677777777777777777766665 556667777777777777777777777777665422 566677777
Q ss_pred HHHHhCCChhhHHHHHHHHHH
Q 041882 154 DILVDNDRVDDAKRMFDDADK 174 (491)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~ 174 (491)
.+|...|++++|+..|++..+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777777766554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=3.5e-06 Score=65.28 Aligned_cols=92 Identities=11% Similarity=0.124 Sum_probs=64.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCC
Q 041882 82 LIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDR 161 (491)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 161 (491)
....+.+.|+++.|...|+.+.+.+ +.+...|..+..+|...|++++|++.|++..+.+. .+..+|..+..++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-cchHHHHHHHHHHHHcCC
Confidence 3455667777777777777777765 55667777777777777777777777777766552 256677777777777777
Q ss_pred hhhHHHHHHHHHHC
Q 041882 162 VDDAKRMFDDADKM 175 (491)
Q Consensus 162 ~~~a~~~~~~~~~~ 175 (491)
+++|...+++....
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 77777777777665
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=4.8e-06 Score=64.50 Aligned_cols=91 Identities=13% Similarity=0.047 Sum_probs=60.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 041882 293 MSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDF 372 (491)
Q Consensus 293 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 372 (491)
...|.+.|++++|...|+++.+.++. +...|..+..+|...|++++|...|++.++.. +-+..+|..+..++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence 34555667777777777776666544 66666667777777777777777777766543 44455666666677777777
Q ss_pred HHHHHHHHHHHhC
Q 041882 373 EGSLKVLNAMLTS 385 (491)
Q Consensus 373 ~~a~~~~~~~~~~ 385 (491)
++|...++++...
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 7777777776664
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.37 E-value=0.00055 Score=59.03 Aligned_cols=281 Identities=10% Similarity=0.025 Sum_probs=137.5
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHH
Q 041882 73 KHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSL 152 (491)
Q Consensus 73 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 152 (491)
.|+..-...++..|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+. -+..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHH
Confidence 34555556666777777777777777765433 445666667777777777766544 255577777
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 041882 153 LDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEM 232 (491)
Q Consensus 153 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 232 (491)
...+.+......+ .+...+...+......++..|-..|.+++...+++..... -..+...++-++..|++.+ .
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~ 148 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-P 148 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-H
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-h
Confidence 7777766554332 1222223345555566777777777777777777766543 2345666777777776653 3
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH----------HHcCCCCChhcHHHHHHHHHhcCCh
Q 041882 233 GKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDM----------AYRGCKPQLVNFGVLMSDLGKRGKI 302 (491)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----------~~~~~~~~~~~~~~ll~~~~~~~~~ 302 (491)
++..+.++... ..-|. .-++..|.+.+-+.++.-++..+ .++ .++..-....+..+.+..+.
T Consensus 149 ~kl~e~l~~~s---~~y~~---~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~--~~~~~~~~~f~e~~~k~~N~ 220 (336)
T d1b89a_ 149 QKMREHLELFW---SRVNI---PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH--PTDAWKEGQFKDIITKVANV 220 (336)
T ss_dssp HHHHHHHHHHS---TTSCH---HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS--TTTTCCHHHHHHHHHHCSST
T ss_pred HHHHHHHHhcc---ccCCH---HHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHc--chhhhhHHHHHHHHHccCCh
Confidence 33333333321 11111 12233333444443333333322 111 23333334444445555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041882 303 EEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAM 382 (491)
Q Consensus 303 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 382 (491)
+...++.....+. ++...+.++......-+..+.. ..+.+.++..-...+++..
T Consensus 221 e~~~~~i~~yL~~----~p~~i~~lL~~v~~~~d~~r~V----------------------~~~~k~~~l~li~p~Le~v 274 (336)
T d1b89a_ 221 ELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAV----------------------NYFSKVKQLPLVKPYLRSV 274 (336)
T ss_dssp HHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHH----------------------HHHHHTTCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHc----CHHHHHHHHHHhccCCCHHHHH----------------------HHHHhcCCcHHHHHHHHHH
Confidence 4444444433332 2223333333333333333333 3334445555556666665
Q ss_pred HhCCCCCCHHhHHHHHHHHHcCCCHHHHHH
Q 041882 383 LTSRHCPRLETFSCLLVGLLKGGKVDDACF 412 (491)
Q Consensus 383 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 412 (491)
.+.| +..+.+++...|...++++.-.+
T Consensus 275 ~~~n---~~~vn~al~~lyie~~d~~~l~~ 301 (336)
T d1b89a_ 275 QNHN---NKSVNESLNNLFITEEDYQALRT 301 (336)
T ss_dssp HTTC---CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcC---hHHHHHHHHHHHhCcchhHHHHH
Confidence 5544 34677888888888888655333
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.37 E-value=4.2e-06 Score=67.70 Aligned_cols=99 Identities=13% Similarity=0.025 Sum_probs=58.2
Q ss_pred CChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041882 284 PQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMV 363 (491)
Q Consensus 284 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 363 (491)
|+...+......+.+.|++++|+..|.++.+..+. +...|..+..+|.+.|++++|+..|++..+.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 33444444555566666666666666666555443 55666666666666666666666666665432 22345566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 041882 364 DGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~ 384 (491)
.++...|++++|...|+++++
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666666554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.34 E-value=0.00053 Score=57.57 Aligned_cols=159 Identities=11% Similarity=0.106 Sum_probs=77.9
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCcCHHHHH
Q 041882 75 SYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGK----AHLVDKAIEVFNRMTSFDCVRTLQSFN 150 (491)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 150 (491)
|+..+..|...+.+.+|+++|.+.|+...+.| +...+..|...|.. ..+...|...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34455566666666677777777777666654 44455555555554 456666666666665543 333333
Q ss_pred HHHHHHHh----CCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 041882 151 SLLDILVD----NDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLK----KGEWEEASRVFDEMLEREVPPTVVTYNSL 222 (491)
Q Consensus 151 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 222 (491)
.+...+.. ..+.+.|...++...+.|. ......+...+.. ......+...+......+ +...+..+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhh
Confidence 34333332 3445566666666655442 1122222222221 223444445554444432 44445555
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHc
Q 041882 223 IGFLCR----TGEMGKAKGLFEDMIKK 245 (491)
Q Consensus 223 l~~~~~----~~~~~~a~~~~~~~~~~ 245 (491)
...+.. ..+...+..+++...+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~ 175 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDL 175 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred hhhhccCCCcccccccchhhhhccccc
Confidence 554443 23344444444444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.29 E-value=5.5e-06 Score=59.66 Aligned_cols=85 Identities=14% Similarity=0.005 Sum_probs=36.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHH
Q 041882 330 YLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDD 409 (491)
Q Consensus 330 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 409 (491)
.+.+.|++++|...|++..... +-+...|..+..++.+.|++++|+..++++++.. +.+...+..+...|...|++++
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHHH
Confidence 3344444444444444444322 2233344444444444444444444444444421 1223444444444444444444
Q ss_pred HHHHHHH
Q 041882 410 ACFVLEE 416 (491)
Q Consensus 410 a~~~~~~ 416 (491)
|.+.+++
T Consensus 103 A~~~l~~ 109 (112)
T d1hxia_ 103 ALASLRA 109 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.29 E-value=3.7e-06 Score=60.62 Aligned_cols=84 Identities=11% Similarity=0.069 Sum_probs=35.4
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhH
Q 041882 86 LARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDA 165 (491)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 165 (491)
+.+.|++++|...++...... |.+..+|..+..++.+.|++++|+..|++..+.++ .+..+|..+..+|...|++++|
T Consensus 26 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~la~~y~~~g~~~~A 103 (112)
T d1hxia_ 26 MLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNANAA 103 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccccccc-ccccchHHHHHHHHHCCCHHHH
Confidence 334444444444444444433 23344444444444444444444444444433321 1334444444444444444444
Q ss_pred HHHHHH
Q 041882 166 KRMFDD 171 (491)
Q Consensus 166 ~~~~~~ 171 (491)
++.+++
T Consensus 104 ~~~l~~ 109 (112)
T d1hxia_ 104 LASLRA 109 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.28 E-value=0.00076 Score=56.58 Aligned_cols=111 Identities=9% Similarity=-0.086 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 041882 302 IEEAKSLLSEMKKRQYKPDVVTYNILINYLCK----EDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLR----VEDFE 373 (491)
Q Consensus 302 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~ 373 (491)
...+...+...... .+...+..+...|.. ..+...+...++...+.| +......+...+.. ..+++
T Consensus 126 ~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 126 FKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHH
T ss_pred hHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchh
Confidence 34444444444332 244444445544443 334455555555554432 33333333333333 34566
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----CCCHHHHHHHHHHHHHCC
Q 041882 374 GSLKVLNAMLTSRHCPRLETFSCLLVGLLK----GGKVDDACFVLEEMEKRK 421 (491)
Q Consensus 374 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 421 (491)
.|..+|++..+.| +...+..|...|.+ ..+.++|.++|++..+.|
T Consensus 200 ~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 200 EALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred hhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 6666666666654 23344444444443 235566666666666555
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=7.2e-06 Score=59.83 Aligned_cols=95 Identities=7% Similarity=-0.004 Sum_probs=59.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCcC-HHHHHHHHHH
Q 041882 80 ASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHL---VDKAIEVFNRMTSFDCVRT-LQSFNSLLDI 155 (491)
Q Consensus 80 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~ 155 (491)
..++..+...+++++|.+.|+.....+ +.++.++..+..++.+.++ +++|+.+|+++...+..|+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 345566666667777777777766665 5566666666666665443 3456777777665543332 2356666667
Q ss_pred HHhCCChhhHHHHHHHHHHC
Q 041882 156 LVDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~~ 175 (491)
|.+.|++++|++.|+++.+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 77777777777777776664
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=4.9e-06 Score=60.74 Aligned_cols=93 Identities=14% Similarity=0.114 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHH
Q 041882 326 ILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVE---DFEGSLKVLNAMLTSRHCPR-LETFSCLLVGL 401 (491)
Q Consensus 326 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 401 (491)
.++..+...+++++|.+.|++....+ +.+..++..+..++.+.+ ++++|+.++++++..+..|+ ..++..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 34445555555555555555555543 344455555555554433 23345555555554332122 12444555555
Q ss_pred HcCCCHHHHHHHHHHHHH
Q 041882 402 LKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~ 419 (491)
.+.|++++|.+.|+++.+
T Consensus 83 ~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 566666666666666554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=1.1e-05 Score=75.25 Aligned_cols=113 Identities=10% Similarity=-0.171 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 041882 321 VVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVG 400 (491)
Q Consensus 321 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 400 (491)
...+..+...+.+.|+.++|...+...... . ...++..+...+...|++++|...|+++.+.. +.+...|+.+...
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~-~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSY--I-CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAIL 195 (497)
T ss_dssp -----------------------CCHHHHH--H-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--C-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHH
Confidence 334444555555555555555555444321 0 12344455555556666666666666666542 2234556666666
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041882 401 LLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVTDACI 438 (491)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 438 (491)
+...|+..+|...|.+..... .|-..++..|...+-+
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 666666666666666665432 3445555555554443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=0.00015 Score=56.28 Aligned_cols=60 Identities=7% Similarity=-0.223 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQI 349 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 349 (491)
|..+..+|.+.|++++|+..++...+.++. ++..|..+..+|...|++++|...|++..+
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344455555555555555555555555433 555555555555556666666666655554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=0.0001 Score=54.25 Aligned_cols=95 Identities=12% Similarity=0.041 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-----HHhHHHH
Q 041882 324 YNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHC-PR-----LETFSCL 397 (491)
Q Consensus 324 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~-----~~~~~~l 397 (491)
+..+...+.+.|++++|+..|.+.++.+ +.+...+..+..+|...|++++|...++++++.... +. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3445566667777777777777776653 445666666777777777777777777776653100 00 2345556
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH
Q 041882 398 LVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 398 ~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
...+...+++++|...|++...
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 6666777777777777776664
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=8e-05 Score=54.78 Aligned_cols=96 Identities=11% Similarity=0.144 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-cC-----HHHHHHH
Q 041882 79 YASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCV-RT-----LQSFNSL 152 (491)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-----~~~~~~l 152 (491)
+..+...+.+.|++++|.+.|...++.+ +.+...+..+..+|.+.|++++|+..++++.+.+.. +. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4455666777777777777777777765 556677777777777777777777777776543211 00 1345556
Q ss_pred HHHHHhCCChhhHHHHHHHHHHC
Q 041882 153 LDILVDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 153 l~~~~~~~~~~~a~~~~~~~~~~ 175 (491)
...+...+++++|++.|++....
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc
Confidence 66666667777777777666543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=0.00036 Score=54.10 Aligned_cols=83 Identities=16% Similarity=-0.012 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHhHHHHHHHH
Q 041882 323 TYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCP-RLETFSCLLVGL 401 (491)
Q Consensus 323 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 401 (491)
+|+.+..+|.+.|++++|+..+++.++.. +.+..++..+..++...|++++|...|+++++.. | +..+...+..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 56677888889999999999999888764 5577888888889999999999999999988853 4 455555555544
Q ss_pred HcCCCHH
Q 041882 402 LKGGKVD 408 (491)
Q Consensus 402 ~~~g~~~ 408 (491)
-+.+...
T Consensus 141 ~~~~~~~ 147 (170)
T d1p5qa1 141 QRIRRQL 147 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4433333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.82 E-value=0.0074 Score=51.77 Aligned_cols=276 Identities=12% Similarity=0.055 Sum_probs=152.8
Q ss_pred cchHHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 041882 45 IPFVNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKA 124 (491)
Q Consensus 45 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (491)
......+.+.|.++.|..+|..+. -|..++..+.+.++++.|.+.+... .+..+|..+...+.+.
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~ 82 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDG 82 (336)
T ss_dssp -----------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhC
Confidence 334456678999999999998543 3788889999999999988877543 2567888888888887
Q ss_pred CCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 041882 125 HLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVF 204 (491)
Q Consensus 125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 204 (491)
.....|. +.......+......++..|-..|.+++...+++...... ..+...++.++..|++.+. +. +.
T Consensus 83 ~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~-~k---l~ 152 (336)
T d1b89a_ 83 KEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP-QK---MR 152 (336)
T ss_dssp TCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-HH---HH
T ss_pred cHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-HH---HH
Confidence 7765542 2233333466667789999999999999999999876432 4577788889999988653 33 33
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 041882 205 DEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKG--------TYPNAVTYALLMEGLCFKGEYNEAKKMMFD 276 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 276 (491)
+.+...+ +..-...++..|-+.+-+.++.-++..+.... ..++..-....+..+.+..+.+...++...
T Consensus 153 e~l~~~s---~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~ 229 (336)
T d1b89a_ 153 EHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQF 229 (336)
T ss_dssp HHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHH
T ss_pred HHHHhcc---ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHHHH
Confidence 3333321 22223345555666666666555555542210 011111122233334444444444433333
Q ss_pred HHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 041882 277 MAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNA 356 (491)
Q Consensus 277 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 356 (491)
..+. .| ...+.++......-+.. .++..+.+.++.......++.....| +.
T Consensus 230 yL~~--~p--~~i~~lL~~v~~~~d~~----------------------r~V~~~~k~~~l~li~p~Le~v~~~n---~~ 280 (336)
T d1b89a_ 230 YLEF--KP--LLLNDLLMVLSPRLDHT----------------------RAVNYFSKVKQLPLVKPYLRSVQNHN---NK 280 (336)
T ss_dssp HHHH--CG--GGHHHHHHHHGGGCCHH----------------------HHHHHHHHTTCTTTTHHHHHHHHTTC---CH
T ss_pred HHHc--CH--HHHHHHHHHhccCCCHH----------------------HHHHHHHhcCCcHHHHHHHHHHHHcC---hH
Confidence 3322 11 12233333322222222 23334444555555555565554433 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHH
Q 041882 357 ATYRMMVDGFLRVEDFEGSLK 377 (491)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~ 377 (491)
.+.+++...|...++++.-.+
T Consensus 281 ~vn~al~~lyie~~d~~~l~~ 301 (336)
T d1b89a_ 281 SVNESLNNLFITEEDYQALRT 301 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCcchhHHHHH
Confidence 566677777777777654333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.82 E-value=0.00058 Score=51.76 Aligned_cols=62 Identities=13% Similarity=-0.045 Sum_probs=37.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041882 183 SFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKK 245 (491)
Q Consensus 183 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 245 (491)
+|..+..+|.+.|++++|++.++...+.+. .+..+|..+..++...|++++|+..|+...+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccc-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555666666666666666666665532 25566666666666666666666666666654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.82 E-value=3.2e-05 Score=64.88 Aligned_cols=125 Identities=10% Similarity=-0.015 Sum_probs=79.1
Q ss_pred HHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 041882 49 NDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVD 128 (491)
Q Consensus 49 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 128 (491)
+...+.|++++|+..+++.++.. +.+...+..+...++..|++++|.+.++...+.. +.+...+..+...+...+..+
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccH
Confidence 45667788888888888888765 6677888888888888888888888888888765 344455555554444333333
Q ss_pred HHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHC
Q 041882 129 KAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKM 175 (491)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 175 (491)
++..........+.+++...+......+...|+.++|.+.++++.+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 33222211111121223334444455666678888888887777654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.81 E-value=0.00075 Score=51.12 Aligned_cols=62 Identities=16% Similarity=-0.129 Sum_probs=36.3
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 288 NFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIG 350 (491)
Q Consensus 288 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 350 (491)
++..+..+|.+.|++++|+..++.+.+.++. +..+|..+..++...|++++|...|++..+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444555566666666666666666555433 5556666666666666666666666665553
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.79 E-value=0.00031 Score=54.84 Aligned_cols=74 Identities=8% Similarity=-0.019 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH-----HCCCCCCHHHHHH
Q 041882 357 ATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEME-----KRKMRFDLKAWEG 431 (491)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~~ 431 (491)
..+..+..++...|++++|+..++++++.. +-+...|..++.+|.+.|+..+|++.|+++. +.|+.|...+-..
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l 146 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 146 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 456778889999999999999999999864 3478899999999999999999999999974 4699998766433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=1.5e-05 Score=74.36 Aligned_cols=227 Identities=9% Similarity=-0.021 Sum_probs=118.2
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCH-HHHHHHHHHHHhCCChhhHHHHHHHH
Q 041882 94 AVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTL-QSFNSLLDILVDNDRVDDAKRMFDDA 172 (491)
Q Consensus 94 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~ 172 (491)
+|.+.+++..+.. +.....+..+..++...+++++| ++++...+ |+. ..++. ........+..+.+.++..
T Consensus 4 eA~q~~~qA~~l~-p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~--e~~Lw~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKV--EQDLWNHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHHH-GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTH--HHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhH--HHHHHHHHHHHHHHHHHHh
Confidence 5677777777654 33345566677777777777765 66665432 221 11111 1111112245566777766
Q ss_pred HHCCCCCCHHhHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 041882 173 DKMGFRPNLISFNVMIKGR--LKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPN 250 (491)
Q Consensus 173 ~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 250 (491)
.+....++..-....+..+ ...+.++.++..+....... +++...+..+...+.+.|+.++|...++...... .
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~ 151 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---C 151 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---H
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---H
Confidence 6544333333222222222 22344555555444433332 2355667777788888888888888777765431 1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041882 251 AVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINY 330 (491)
Q Consensus 251 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 330 (491)
..++..+...+...+++++|...|.+..+.. +.+...|+.+...+...|+..+|...|.+...... |...++..|...
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~-~~~~a~~nL~~~ 229 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF-PFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHH
Confidence 2456667778888888888888888888774 44567788888888888888888888888877643 467777777776
Q ss_pred HHhc
Q 041882 331 LCKE 334 (491)
Q Consensus 331 ~~~~ 334 (491)
+.+.
T Consensus 230 ~~~~ 233 (497)
T d1ya0a1 230 LSKA 233 (497)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.74 E-value=0.00032 Score=54.39 Aligned_cols=93 Identities=6% Similarity=0.002 Sum_probs=43.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcC--------------C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcC
Q 041882 81 SLIYKLARARDFDAVETVLGYIQDFN--------------I-RCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRT 145 (491)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~~~~~~--------------~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 145 (491)
.....+...|++..|.+.|..+.+.. . +.....+..+..++.+.|++++|+..+++..+... .+
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~ 110 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SN 110 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-hh
Confidence 34555667777777777776654310 0 11122333344444444444444444444444332 13
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHH
Q 041882 146 LQSFNSLLDILVDNDRVDDAKRMFDDADK 174 (491)
Q Consensus 146 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 174 (491)
..+|..+..++...|++++|+..|+...+
T Consensus 111 ~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 111 TKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 44444444444444444444444444444
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.72 E-value=0.00035 Score=54.11 Aligned_cols=62 Identities=10% Similarity=-0.211 Sum_probs=37.4
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 288 NFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIG 350 (491)
Q Consensus 288 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 350 (491)
.+..+..++.+.|++++|+..++.+.+..+. +...|..+..+|...|++++|+..|++..+.
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3444555566666666666666666655443 5556666666666666666666666666554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.71 E-value=0.00047 Score=53.78 Aligned_cols=71 Identities=10% Similarity=0.112 Sum_probs=45.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHHH
Q 041882 182 ISFNVMIKGRLKKGEWEEASRVFDEMLEREVPPTVVTYNSLIGFLCRTGEMGKAKGLFEDMIK-----KGTYPNAVT 253 (491)
Q Consensus 182 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 253 (491)
..+..+..++.+.|++++|+..++.+.+.... +...|..++.+|...|+..+|++.|+++.. .|+.|...+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 34555666667777777777777776665433 666677777777777777777777766533 366666543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.67 E-value=0.00066 Score=52.42 Aligned_cols=61 Identities=8% Similarity=-0.211 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 289 FGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIG 350 (491)
Q Consensus 289 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 350 (491)
|..+..+|.+.|++++|+..++...+.++. +...|..+..++...|++++|...|.++...
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555555666666666666666555443 5555666666666666666666666666553
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.61 E-value=0.0026 Score=48.91 Aligned_cols=95 Identities=11% Similarity=-0.022 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041882 322 VTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGL 401 (491)
Q Consensus 322 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 401 (491)
.+|+.+..+|.+.|++++|+..+++..... +.+..+|..+..++...|++++|...|+++++.. +.+..+...+....
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 356667888889999999999999988764 6677888888899999999999999999998853 23445555554444
Q ss_pred HcCCCHH-HHHHHHHHHH
Q 041882 402 LKGGKVD-DACFVLEEME 418 (491)
Q Consensus 402 ~~~g~~~-~a~~~~~~~~ 418 (491)
...+... ...+++..|.
T Consensus 143 ~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 143 KKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 4444333 3445555544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.61 E-value=0.00018 Score=54.09 Aligned_cols=37 Identities=5% Similarity=-0.181 Sum_probs=19.6
Q ss_pred hhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHh
Q 041882 51 LKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLAR 88 (491)
Q Consensus 51 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 88 (491)
+.+.+.+++|+..|+...+.. |.+..++..+..++..
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~ 43 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLE 43 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHH
Confidence 344455566666666655543 4455555555555543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.60 E-value=0.00026 Score=53.17 Aligned_cols=94 Identities=10% Similarity=0.045 Sum_probs=46.4
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041882 298 KRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKE----------DRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFL 367 (491)
Q Consensus 298 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 367 (491)
+.+.+++|...|+...+..+. +...+..+..++... +.+++|+..|++..+.. +.+..+|..+..+|.
T Consensus 9 r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHH
Confidence 334456666666666555443 555555555554432 23345555555555432 334445555555544
Q ss_pred hcC-----------CHHHHHHHHHHHHhCCCCCCHHhHH
Q 041882 368 RVE-----------DFEGSLKVLNAMLTSRHCPRLETFS 395 (491)
Q Consensus 368 ~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~ 395 (491)
..| .++.|.+.|++.++. .|+...|.
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~ 123 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYL 123 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHH
Confidence 332 245556666666552 34444433
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.56 E-value=6e-05 Score=63.18 Aligned_cols=123 Identities=13% Similarity=0.017 Sum_probs=68.4
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhH
Q 041882 86 LARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDA 165 (491)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 165 (491)
..+.|++++|.+.++...+.. |.+...+..+...++..|++++|...|+...+.... +...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHH
Confidence 345677788888887777776 667777777788888888888888777777665421 344444444443322222222
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 041882 166 KRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEEASRVFDEMLER 210 (491)
Q Consensus 166 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 210 (491)
..-.......+-.++...+......+...|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 111110000011112223333445566667777777777776654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.09 E-value=0.0055 Score=46.26 Aligned_cols=97 Identities=12% Similarity=0.059 Sum_probs=65.0
Q ss_pred HHHHH--HHHHHhcCCHHHHHHHHHHHHhCCC-CC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 041882 323 TYNIL--INYLCKEDRAAEAYKVLTEMQIGGC-KP----------NAATYRMMVDGFLRVEDFEGSLKVLNAMLTS---- 385 (491)
Q Consensus 323 ~~~~l--i~~~~~~~~~~~a~~~~~~~~~~~~-~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---- 385 (491)
+|..+ ...+.+.|++++|+..|++.++..- .| ....|+.+..+|...|++++|...+++.+..
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 3445566788888888877765210 11 1346777788888888888888888877652
Q ss_pred -CCCCC-----HHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 386 -RHCPR-----LETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 386 -~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
...++ ...+..+..+|...|++++|...|++..+
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 22466778889999999999999988764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.95 E-value=0.0027 Score=43.25 Aligned_cols=66 Identities=14% Similarity=-0.022 Sum_probs=40.2
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcC-----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 041882 76 YPSYASLIYKLARARDFDAVETVLGYIQDFN-----IRC-KETLFISLIQHYGKAHLVDKAIEVFNRMTSFD 141 (491)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 141 (491)
...+-.+...+.+.|+++.|...|++..+.. ..+ ...++..+..++.+.|++++|+..++++.+.+
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 3445566666777777777777776655431 011 13556666666777777777777777666654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.86 E-value=0.013 Score=44.06 Aligned_cols=91 Identities=10% Similarity=-0.031 Sum_probs=60.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCC-C----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCC--
Q 041882 294 SDLGKRGKIEEAKSLLSEMKKRQYK-P----------DVVTYNILINYLCKEDRAAEAYKVLTEMQIG-----GCKPN-- 355 (491)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~~~~~~~~-~----------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-- 355 (491)
..+...|++++|+..|++..+.... | ....|+.+..+|...|++++|...+++.... ...++
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 3344556677777666666543111 1 1356777888888888888888888776542 11222
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 356 ---AATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 356 ---~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
...+..+..+|...|++++|+..|++.++
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22456677888999999999999998775
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.54 E-value=0.01 Score=40.16 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=10.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 041882 185 NVMIKGRLKKGEWEEASRVFDEMLE 209 (491)
Q Consensus 185 ~~ll~~~~~~~~~~~a~~~~~~~~~ 209 (491)
+.+..++.+.|++++|+..++++.+
T Consensus 50 ~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 50 DYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHhcCChHHHHHHHHHHHH
Confidence 3333344444444444444444333
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.31 E-value=0.07 Score=38.49 Aligned_cols=14 Identities=7% Similarity=0.154 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHhC
Q 041882 197 WEEASRVFDEMLER 210 (491)
Q Consensus 197 ~~~a~~~~~~~~~~ 210 (491)
.+.|.++|+...+.
T Consensus 75 ~~~A~~~~~~aa~~ 88 (133)
T d1klxa_ 75 LRKAAQYYSKACGL 88 (133)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hHHHHHHHhhhhcc
Confidence 34444444444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.21 E-value=0.076 Score=38.29 Aligned_cols=110 Identities=14% Similarity=0.126 Sum_probs=50.5
Q ss_pred ChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 041882 56 DPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGK----AHLVDKAI 131 (491)
Q Consensus 56 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 131 (491)
|+++|+.+|++..+.|.. ..+..+.. ....+.++|.+.++...+.| ++.....|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 566777777776665522 22222221 22345555555555555544 23333334444332 23445555
Q ss_pred HHHHHhhhCCCCcCHHHHHHHHHHHHh----CCChhhHHHHHHHHHHCC
Q 041882 132 EVFNRMTSFDCVRTLQSFNSLLDILVD----NDRVDDAKRMFDDADKMG 176 (491)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 176 (491)
++|++..+.| ++.+...|...|.. ..+..+|.++|+...+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 5555554443 33333334333333 234444555554444433
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.17 E-value=0.29 Score=33.96 Aligned_cols=68 Identities=13% Similarity=0.053 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041882 355 NAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMR 423 (491)
Q Consensus 355 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 423 (491)
+...+...+.....+|.-++-.++++.+.+.+ .+++...-.+..+|.+.|...++.+++.++-++|++
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 33445566777788888888888888877753 577788888888999999999999988888888764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.10 E-value=0.31 Score=33.83 Aligned_cols=140 Identities=10% Similarity=0.040 Sum_probs=89.3
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHH
Q 041882 227 CRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCFKGEYNEAKKMMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAK 306 (491)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 306 (491)
.-.|..++..+++.+.... .+..-|+.++--....-+-+-....++.+-+. .|. ..+++.....
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHH
Confidence 3457777777777777664 24556666666666666666666666555432 221 1334444444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041882 307 SLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSR 386 (491)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 386 (491)
..+-.+-. +...++..++.+.+.|+-++-.++++++.+.+ .+++.....+..+|-+.|+..++-+++.++-+.|
T Consensus 77 ~C~~~~n~-----~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 77 ECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhcc-----hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 33333222 44556667777788888888888888866644 7777777778888888888888888888887777
Q ss_pred CC
Q 041882 387 HC 388 (491)
Q Consensus 387 ~~ 388 (491)
++
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 53
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.98 E-value=2.8 Score=36.99 Aligned_cols=314 Identities=8% Similarity=-0.005 Sum_probs=140.6
Q ss_pred HHHhhhcCChHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCC
Q 041882 48 VNDLKEIRDPDEALSLFHRHHQMGSKHSYPSYASLIYKLARARDFDAVETVLGYIQDFNIRC-KETLFISLIQHYGKAHL 126 (491)
Q Consensus 48 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 126 (491)
+....+.|+.+.+.++...+.. . | ...|-..-..-.+.++. ...++...+.+..-.| ....-...+..+.+.++
T Consensus 13 a~~a~~~~~~~~~~~~~~~L~d--y-p-L~pYl~~~~l~~~~~~~-~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~ 87 (450)
T d1qsaa1 13 IKQAWDNRQMDVVEQMMPGLKD--Y-P-LYPYLEYRQITDDLMNQ-PAVTVTNFVRANPTLPPARTLQSRFVNELARRED 87 (450)
T ss_dssp HHHHHHTTCHHHHHHHSGGGTT--S-T-THHHHHHHHHHHTGGGC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHhhhcC--C-C-CHHHHHHHHHHhccccC-CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccC
Confidence 4556777888888888776643 2 2 22333322222222211 1223334444432112 22333445666777888
Q ss_pred HHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChHH--HHHHH
Q 041882 127 VDKAIEVFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDAKRMFDDADKMGFRPNLISFNVMIKGRLKKGEWEE--ASRVF 204 (491)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~--a~~~~ 204 (491)
+...+..+. ..+.+...-.....+....|+.++|...+..+-..|. .....+..+...+.+.|.+.. ..+-+
T Consensus 88 w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~~~lt~~~~~~R~ 161 (450)
T d1qsaa1 88 WRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDPLAYLERI 161 (450)
T ss_dssp HHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCchHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 776554432 1234566666777888888888888877776655442 123334444444444333221 11111
Q ss_pred HHHHhCC-----------CCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCCHhHH
Q 041882 205 DEMLERE-----------VPPT-VVTYNSLIGFLCRTGEMGKAKGLFEDMIKKGTYPNAVTYALLMEGLCF--KGEYNEA 270 (491)
Q Consensus 205 ~~~~~~~-----------~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a 270 (491)
..+...| ++++ .......+.... ++..+..... .. ..+......+..++.+ ..+.+.+
T Consensus 162 ~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~---~p~~~~~~~~---~~--~~~~~~~~~~~~~l~rla~~d~~~a 233 (450)
T d1qsaa1 162 RLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFAR---TT--GATDFTRQMAAVAFASVARQDAENA 233 (450)
T ss_dssp HHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHH---HS--CCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHh---ChHhHHHHHh---cC--CCChhhhHHHHHHHHHHhccChhHH
Confidence 1111111 0111 111122222111 1111111111 11 1122222222233222 2355666
Q ss_pred HHHHHHHHHcCCCCChhcHHHHHHHH----HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041882 271 KKMMFDMAYRGCKPQLVNFGVLMSDL----GKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTE 346 (491)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 346 (491)
..++........ .+......+-... ...+..+.+...+......+. +.......+......+++..+...+..
T Consensus 234 ~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~ 310 (450)
T d1qsaa1 234 RLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLAR 310 (450)
T ss_dssp HHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHh
Confidence 666666554321 2222222221111 223445556666555554432 333333344444556677777666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041882 347 MQIGGCKPNAATYRMMVDGFLRVEDFEGSLKVLNAMLT 384 (491)
Q Consensus 347 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 384 (491)
|.... .-.....--+..++...|+.+.|..+|..+..
T Consensus 311 l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 311 LPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp SCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 54321 12223333455666667777777777776654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.19 E-value=3.5 Score=36.28 Aligned_cols=361 Identities=10% Similarity=-0.033 Sum_probs=193.4
Q ss_pred cCChHHHHHHHHHhhhCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041882 54 IRDPDEALSLFHRHHQMGSKH-SYPSYASLIYKLARARDFDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIE 132 (491)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 132 (491)
.....++..+++. ..-.| ....-...+..+.+.++++.....+ . ..+.+...-.....+....|+.+.|..
T Consensus 52 ~~~~~~i~~Fl~~---~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~-~~p~~~~~~c~~~~A~~~~g~~~~a~~ 123 (450)
T d1qsaa1 52 NQPAVTVTNFVRA---NPTLPPARTLQSRFVNELARREDWRGLLAFS----P-EKPGTTEAQCNYYYAKWNTGQSEEAWQ 123 (450)
T ss_dssp GCCHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----C-SCCSSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHH---CCCChhHHHHHHHHHHHHHhccCHHHHHHhc----c-CCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 3455555555543 21122 1222344466777888876644433 1 224566666777888888999999988
Q ss_pred HHHHhhhCCCCcCHHHHHHHHHHHHhCCChhhH--HHHHHHHHHCC-----------CCCCH-HhHHHHHHHHHhcCChH
Q 041882 133 VFNRMTSFDCVRTLQSFNSLLDILVDNDRVDDA--KRMFDDADKMG-----------FRPNL-ISFNVMIKGRLKKGEWE 198 (491)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a--~~~~~~~~~~~-----------~~p~~-~~~~~ll~~~~~~~~~~ 198 (491)
.+..+-..|. .....+..+...+...|..... .+-+..+...| +.++. ......+.... +..
T Consensus 124 ~~~~lW~~~~-~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~---~p~ 199 (450)
T d1qsaa1 124 GAKELWLTGK-SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPN 199 (450)
T ss_dssp HHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGG
T ss_pred HHHHHHhcCC-CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHh---ChH
Confidence 8877655442 2444556666666555543322 22233222222 11111 11122222111 122
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCCHHHHHHHH----HHHHhcCCHhHHHH
Q 041882 199 EASRVFDEMLEREVPPTVVTYNSLIGFLCR--TGEMGKAKGLFEDMIKKGTYPNAVTYALLM----EGLCFKGEYNEAKK 272 (491)
Q Consensus 199 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll----~~~~~~~~~~~a~~ 272 (491)
.+..... . ...+......+..++.+ ..+.+.+...+......... +......+- ......+..+.+..
T Consensus 200 ~~~~~~~---~--~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~ 273 (450)
T d1qsaa1 200 TVLTFAR---T--TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAK 273 (450)
T ss_dssp GHHHHHH---H--SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHH
T ss_pred hHHHHHh---c--CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 2222111 1 11233333333333333 35788888888887765332 222222222 22234566777877
Q ss_pred HHHHHHHcCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041882 273 MMFDMAYRGCKPQLVNFGVLMSDLGKRGKIEEAKSLLSEMKKRQYKPDVVTYNILINYLCKEDRAAEAYKVLTEMQIGGC 352 (491)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 352 (491)
++......+ .+.......+......+++..+...+..+..... ....-.--+..++...|+.+.|...|.....
T Consensus 274 ~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~-~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~--- 347 (450)
T d1qsaa1 274 WRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ--- 347 (450)
T ss_dssp HHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---
T ss_pred HHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcccc-cHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---
Confidence 777766653 3444444555666778899999999888754322 2344445577888999999999999998864
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHH----hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 041882 353 KPNAATYRMMVDGFLRVEDFEGSLKVLNAMLTSRHC--PRLE----TFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDL 426 (491)
Q Consensus 353 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 426 (491)
.++ |-..+.+ .+.|..-. +-....+ +... .-...+..+...|....|...+..+.+. . +.
T Consensus 348 ~~~---fYG~LAa-~~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~-~--~~ 413 (450)
T d1qsaa1 348 QRG---FYPMVAA-QRIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SK 413 (450)
T ss_dssp SCS---HHHHHHH-HHTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CH
T ss_pred CCC---hHHHHHH-HHcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC-C--CH
Confidence 344 3332222 12221100 0000000 0000 0122356677889999999988888754 2 55
Q ss_pred HHHHHHHHHHHhcCCCcchhHHHHHH
Q 041882 427 KAWEGLVTDACIGDGNAGGLVEIRDM 452 (491)
Q Consensus 427 ~~~~~ll~~~~~~~~~~~~~~~~~~m 452 (491)
.....+.....+.|.++.++....+.
T Consensus 414 ~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 414 TEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 56666677678888887777666544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.09 E-value=1.2 Score=30.84 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041882 354 PNAATYRMMVDGFLRVE---DFEGSLKVLNAMLTSRHCPR-LETFSCLLVGLLKGGKVDDACFVLEEMEK 419 (491)
Q Consensus 354 ~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (491)
++..+--....++++.. +.++++.+++.+.+.+ +.+ ...+..+..+|.+.|++++|.+.++.+.+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44444444444444432 3456666666666532 112 23455566666677777777777766665
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.67 E-value=0.89 Score=29.75 Aligned_cols=62 Identities=11% Similarity=0.066 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041882 372 FEGSLKVLNAMLTSRHCPRLETFSCLLVGLLKGGKVDDACFVLEEMEKRKMRFDLKAWEGLVT 434 (491)
Q Consensus 372 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 434 (491)
.=++.+-+..+....+.|++.+..+.+++|.+.+++..|.++++-.+.+ ..++...|..+++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq 83 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence 3345555666666666777777777777777778888787777777643 2233445555554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.99 E-value=1.2 Score=29.15 Aligned_cols=48 Identities=2% Similarity=0.090 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 041882 92 FDAVETVLGYIQDFNIRCKETLFISLIQHYGKAHLVDKAIEVFNRMTS 139 (491)
Q Consensus 92 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 139 (491)
.-++++-++.+......|++.+..+.+++|.+.+++..|.++|+-++.
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334555555555555556666666666666666666666666665543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.62 E-value=1.8 Score=29.97 Aligned_cols=67 Identities=9% Similarity=0.125 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041882 318 KPDVVTYNILINYLCKED---RAAEAYKVLTEMQIGGCKPNA-ATYRMMVDGFLRVEDFEGSLKVLNAMLTS 385 (491)
Q Consensus 318 ~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 385 (491)
.++..+--....++++.. +.++++.+++++...+ +.+. ..+-.+.-+|.+.|++++|.+.++.+++.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 345555555555666543 4456777777776542 2232 35555666777788888888888887774
|