Citrus Sinensis ID: 041891

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
MKAELRANTSSISLQNPSLFNTGQSSIPGALRGCLGSLDGACIEKLLLHCASALESNDVTLAQQVMWVLNNVASPVGDPNQRLTSSFLRALISRASKVCPTTLSNFNGSSTNHRRLMSVTELAGYVDLIPWHRFGFCASNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDVPFEFKVIDDSSSAGDIVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQNWLRYLYDDEGRGINAQDASLRDAFLHLIKGLNPCIMIVVDEDSDLSASSLTSRIATCFNYLWIPFDALETFLPKESRQRLDYEADVGHKIENIISFEGFQRIERSESGSKLSQRMKNAGFFSLPFCEETVKEVRSLLDEHASGWGMKREEEMLALTWKGHNSVFATAWVPNGLED
cHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEccccccHHHHHHccccccHHHHHHccccccccccccccccEEEEEccccccccccccccccccccccHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHccccccEEEEcccEEEEEEcccEEEEEEEEccccccc
cHHHHHHHcccccccccccccccccccccccEEcccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHcccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHHccccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHccccEEEEEEEcccccccccHHccccccccccHccccccccHHHcccccccEEEEEHHHHHHcccccccccEEEEcccHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccEEEccccEEEEcccccEEEEEEccccccccc
mkaelrantssislqnpslfntgqssipgalrgclgsldGACIEKLLLHCASALESNDVTLAQQVMWVLNnvaspvgdpnqrLTSSFLRALISRASkvcpttlsnfngsstnhrrLMSVTELAgyvdlipwhrfgfcasnSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALakrpegppslritvpysrppvppllnvsaEEVGLrlgnfakfrdvpfefkviddsssagdivmsklessssfhFESLLshlstpsilnlredEALVINCQNWLRYLyddegrginaqdASLRDAFLHLIKglnpcimivvdedsdlsasSLTSRIATCFnylwipfdaletflpkesrqrldyEADVGHKIENIISFegfqriersesgsKLSQRMKnagffslpfCEETVKEVRSLLDEHASGWGMKREEEMLALTWKGhnsvfatawvpngled
mkaelrantssislqnpslfnTGQSSIPGALRGCLGSLDGACIEKLLLHCASALESNDVTLAQQVMWVLNNVASPVGDPNQRLTSSFLRALISRAskvcpttlsnfngsstnhrRLMSVTELAGYVDLIPWHRFGFCASNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDVPFEFKVIDDSSSAGDIVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQNWLRYLYDDEGRGINAQDASLRDAFLHLIKGLNPCIMIVVDEDSDLSASSLTSRIATCFNYLWIPFDALETFLPKESRQRLDYEADVGHKIeniisfegfqriERSESGSKLSQRMKNAGFFSLPFCEETVKEVRSLLDehasgwgmKREEEMLALTWKGHNSVFATAWVPNGLED
MKAELRANTSSISLQNPSLFNTGQSSIPGALRGCLGSLDGACIEKLLLHCASALESNDVTLAQQVMWVLNNVASPVGDPNQRLTSSFLRALISRASKVCPTTLSNFNGSSTNHRRLMSVTELAGYVDLIPWHRFGFCASNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDVPFEFKVIDDSSSAGDIVMSKlessssfhfesllshlsTPSILNLREDEALVINCQNWLRYLYDDEGRGINAQDASLRDAFLHLIKGLNPCIMIVVDEDSDLSASSLTSRIATCFNYLWIPFDALETFLPKESRQRLDYEADVGHKIENIISFEGFQRIERSESGSKLSQRMKNAGFFSLPFCEETVKEVRSLLDEHASGWGMKREEEMLALTWKGHNSVFATAWVPNGLED
**************************IPGALRGCLGSLDGACIEKLLLHCASALESNDVTLAQQVMWVLNNVASPVGDPNQRLTSSFLRALISRASKVCPTTLSNFNGSSTNHRRLMSVTELAGYVDLIPWHRFGFCASNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAK********RITVPYS**PVPPLLNVSAEEVGLRLGNFAKFRDVPFEFKVID*****************************TPSILNLREDEALVINCQNWLRYLYDDEGRGINAQDASLRDAFLHLIKGLNPCIMIV**************RIATCFNYLWIPFDALETFLPKESRQRLDYEADVGHKIENIISFEGFQR****************AGFFSLPFCEETVKEVRSLLDEHASGWGMKREEEMLALTWKGHNSVFATAWVP*****
*********************************************LLLHCASALESNDVTLAQQVMWVLNNVASPVGDPNQRLTSSFLRALISRASKVC****************LMSVTELAGYVDLIPWHRFGFCASNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALA*****PPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDVPFEFKVIDDSSSAGDIVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQNWLRYLY************SLRDAFLHLIKGLNPCIMIVVDEDSDLSASSLTSRIATCFNYLWIPFDALETFLPKESRQRLDYEADVGHKIENIISFEGFQRIERSESGSKLSQRMKNAGFFSLPFCEETVKEVRSLLDEHASGWGMKREEEMLALTWKGHNSVFATA*VPN****
**********SISLQNPSLFNTGQSSIPGALRGCLGSLDGACIEKLLLHCASALESNDVTLAQQVMWVLNNVASPVGDPNQRLTSSFLRALISRASKVCPTTLSNFNGSSTNHRRLMSVTELAGYVDLIPWHRFGFCASNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDVPFEFKVIDDSSSAGDIVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQNWLRYLYDDEGRGINAQDASLRDAFLHLIKGLNPCIMIVVDEDSDLSASSLTSRIATCFNYLWIPFDALETFLPKESRQRLDYEADVGHKIENIISFEGFQRIER********QRMKNAGFFSLPFCEETVKEVRSLLDEHASGWGMKREEEMLALTWKGHNSVFATAWVPNGLED
******************************LRGCLGSLDGACIEKLLLHCASALESNDVTLAQQVMWVLNNVASPVGDPNQRLTSSFLRALISRASKVCPTTLSNFNGSSTNHRRLMSVTELAGYVDLIPWHRFGFCASNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDVPFEFKVIDDSSSAGDIVMSKLESS*SFHFESLLSHLSTPSILNLREDEALVINCQNWLRYLYDDEGRGINAQDASLRDAFLHLIKGLNPCIMIVVDEDSDLSASSLTSRIATCFNYLWIPFDALETFLPKESRQRLDYEADVGHKIENIISFEGFQRIERSESGSKLSQRMKNAGFFSLPFCEETVKEVRSLLDEHASGWGMKREEEMLALTWKGHNSVFATAWVPN****
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MKAELRANTSSISLQNPSLFNTGQSSIPGALRGCLGSLDGACIEKLLLHCASALESNDVTLAQQVMWVLNNVASPVGDPNQRLTSSFLRALISRASKVCPTTLSNFNGSSTNHRRLMSVTELAGYVDLIPWHRFGFCASNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDVPFEFKVIDDSSSAGDIVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQNWLRYLYDDEGRGINAQDASLRDAFLHLIKGLNPCIMIVVDEDSDLSASSLTSRIATCFNYLWIPFDALETFLPKESRQRLDYEADVGHKIENIISFEGFQRIERSESGSKLSQRMKNAGFFSLPFCEETVKEVRSLLDEHASGWGMKREEEMLALTWKGHNSVFATAWVPNGLED
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query449 2.2.26 [Sep-21-2011]
Q9SN22410 Scarecrow-like protein 32 yes no 0.879 0.963 0.465 1e-103
Q9SZF7531 Protein SHORT-ROOT OS=Ara no no 0.879 0.743 0.302 4e-48
Q8H2X8602 Protein SHORT-ROOT 1 OS=O no no 0.826 0.616 0.321 6e-46
Q75I13603 Protein SHORT-ROOT 2 OS=O no no 0.819 0.610 0.304 9e-46
A2XIA8603 Protein SHORT-ROOT 2 OS=O N/A no 0.819 0.610 0.302 2e-45
A2YN56602 Protein SHORT-ROOT 1 OS=O N/A no 0.826 0.616 0.319 7e-45
Q9LDL7490 Scarecrow-like transcript no no 0.853 0.781 0.274 9e-40
Q9SDQ3593 Scarecrow-like protein 1 no no 0.812 0.615 0.285 2e-39
Q8GVE1544 Chitin-inducible gibberel no no 0.808 0.667 0.270 4e-39
Q9LPR8482 Scarecrow-like protein 3 no no 0.928 0.865 0.283 9e-39
>sp|Q9SN22|SCL32_ARATH Scarecrow-like protein 32 OS=Arabidopsis thaliana GN=SCL32 PE=2 SV=1 Back     alignment and function desciption
 Score =  376 bits (965), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/436 (46%), Positives = 279/436 (63%), Gaps = 41/436 (9%)

Query: 16  NPSLFNTGQSSIPGALRGCLGSLDGACIEKLLLHCASALESNDVTLAQQVMWVLNNVASP 75
           NP+ F +     P  LRGC    D   +E+LLLHCA+A++SND  L  Q++WVLNN+A P
Sbjct: 8   NPTRFPS-----PKPLRGCG---DANFMEQLLLHCATAIDSNDAALTHQILWVLNNIAPP 59

Query: 76  VGDPNQRLTSSFLRALISRASKVCPT---TLSNFNGSSTNHRRLMSVTELAGYVDLIPWH 132
            GD  QRLTS+FLRAL+SRA    PT   T+S    +   HR   SV ELA +VDL PWH
Sbjct: 60  DGDSTQRLTSAFLRALLSRAVSKTPTLSSTISFLPQADELHR--FSVVELAAFVDLTPWH 117

Query: 133 RFGFCASNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPS-LRITVPYSR 191
           RFGF A+N+AI  A++GYS VHI+D S+THCMQ PTLIDA+A R   PP  L++TV  S 
Sbjct: 118 RFGFIAANAAILTAVEGYSTVHIVDLSLTHCMQIPTLIDAMASRLNKPPPLLKLTVVSSS 177

Query: 192 PPVPPLLNVSAEEVGLRLGNFAKFRDVPFEFKVIDDSSSAGDIVMSKLESSSSFHFESLL 251
              PP +N+S EE+G +L NFA  R++  EF ++  + S G              F SLL
Sbjct: 178 DHFPPFINISYEELGSKLVNFATTRNITMEFTIVPSTYSDG--------------FSSLL 223

Query: 252 SHLST-PSILNLREDEALVINCQNWLRYLYDDEGRGINAQDASLRDAFLHLIKGLNPCIM 310
             L   PS  N    EALV+NC   LRY+ ++    + +  +SLR  FL  ++ LNP I+
Sbjct: 224 QQLRIYPSSFN----EALVVNCHMMLRYIPEE---PLTSSSSSLRTVFLKQLRSLNPRIV 276

Query: 311 IVVDEDSDLSASSLTSRIATCFNYLWIPFDALETFLPKESRQRLDYEADVGHKIENIISF 370
            +++ED DL++ +L +R+ + FNY WIPFD  +TF+   S QR  YEA++  KIEN+++ 
Sbjct: 277 TLIEEDVDLTSENLVNRLKSAFNYFWIPFDTTDTFM---SEQRRWYEAEISWKIENVVAK 333

Query: 371 EGFQRIERSESGSKLSQRMKNAGFFSLPFCEETVKEVRSLLDEHASGWGMKRE--EEMLA 428
           EG +R+ER+E+  +  +RM+ A F  +   E+ V +V+++L+EHA GWGMK+E  +E L 
Sbjct: 334 EGAERVERTETKRRWIERMREAEFGGVRVKEDAVADVKAMLEEHAVGWGMKKEDDDESLV 393

Query: 429 LTWKGHNSVFATAWVP 444
           LTWKGH+ VFAT WVP
Sbjct: 394 LTWKGHSVVFATVWVP 409
Probable transcription factor involved in plant development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SZF7|SHR_ARATH Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR PE=1 SV=1 Back     alignment and function description
>sp|Q8H2X8|SHR1_ORYSJ Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica GN=SHR1 PE=1 SV=2 Back     alignment and function description
>sp|Q75I13|SHR2_ORYSJ Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica GN=SHR2 PE=1 SV=1 Back     alignment and function description
>sp|A2XIA8|SHR2_ORYSI Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica GN=SHR2 PE=3 SV=1 Back     alignment and function description
>sp|A2YN56|SHR1_ORYSI Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica GN=SHR1 PE=3 SV=1 Back     alignment and function description
>sp|Q9LDL7|PAT1_ARATH Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SDQ3|SCL1_ARATH Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1 Back     alignment and function description
>sp|Q8GVE1|CIGR2_ORYSJ Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LPR8|SCL3_ARATH Scarecrow-like protein 3 OS=Arabidopsis thaliana GN=SCL3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query449
224132946448 GRAS family transcription factor [Populu 0.995 0.997 0.8 0.0
224093250449 GRAS family transcription factor [Populu 0.991 0.991 0.799 0.0
255549291444 DELLA protein DWARF8, putative [Ricinus 0.982 0.993 0.789 0.0
225447398445 PREDICTED: scarecrow-like protein 32-lik 0.984 0.993 0.778 0.0
147789235458 hypothetical protein VITISV_041420 [Viti 0.962 0.943 0.763 0.0
356542103451 PREDICTED: scarecrow-like protein 32-lik 0.977 0.973 0.738 0.0
356549990458 PREDICTED: scarecrow-like protein 32-lik 0.975 0.956 0.745 0.0
357453549458 GRAS family transcription factor [Medica 0.979 0.960 0.733 0.0
449453664433 PREDICTED: scarecrow-like protein 32-lik 0.924 0.958 0.621 1e-156
413945919426 hypothetical protein ZEAMMB73_903974 [Ze 0.870 0.917 0.528 1e-123
>gi|224132946|ref|XP_002327918.1| GRAS family transcription factor [Populus trichocarpa] gi|222837327|gb|EEE75706.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/450 (80%), Positives = 392/450 (87%), Gaps = 3/450 (0%)

Query: 1   MKAELRANTSSISLQNPSLFNTGQSSIPGALRGCLGSLDGACIEKLLLHCASALESNDVT 60
           MK ELR NT+SISLQNPSLFNT QSS+ GAL+GCLGSLDGACIEKLLLHCASALE ND T
Sbjct: 1   MKTELRGNTTSISLQNPSLFNTPQSSLSGALKGCLGSLDGACIEKLLLHCASALEHNDGT 60

Query: 61  LAQQVMWVLNNVASPVGDPNQRLTSSFLRALISRASKVCPTTLSNFNGSSTNHRRLMSVT 120
           L QQVMWVLNNVAS VGDPNQRLTS FLRAL+SRASKVCPT + +F+GSST  RR MSVT
Sbjct: 61  LVQQVMWVLNNVASLVGDPNQRLTSWFLRALVSRASKVCPTAM-DFDGSSTIRRRQMSVT 119

Query: 121 ELAGYVDLIPWHRFGFCASNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGP 180
           ELA YVDLIPWHRFGFCASNSAIFKAI+GYSKVHILDFSITHCMQWPTLIDALAKRPEGP
Sbjct: 120 ELAVYVDLIPWHRFGFCASNSAIFKAIEGYSKVHILDFSITHCMQWPTLIDALAKRPEGP 179

Query: 181 PSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDVPFEFKVIDDSSSAGDIVMSKLE 240
           PSLRITVP  RPPVPP LNVS EEVGLRL NFAKFRDVPFEF VIDD S      +   E
Sbjct: 180 PSLRITVPSCRPPVPPFLNVSCEEVGLRLSNFAKFRDVPFEFNVIDDPSYLASTEIMPKE 239

Query: 241 SSSSFHFESLLSHLSTPSILNLREDEALVINCQNWLRYLYDDEGRGINAQDASLRDAFLH 300
           SS  FHFESLL+HL TPS+LNLR+DEALVINCQNWLRYL + E +G + Q +SLRDAFL 
Sbjct: 240 SSHDFHFESLLNHL-TPSVLNLRDDEALVINCQNWLRYLSNIEQQGSSVQYSSLRDAFLR 298

Query: 301 LIKGLNPCIMIVVDEDSDLSASSLTSRIATCFNYLWIPFDALETFLPKESRQRLDYEADV 360
            +K  NPCI+IVVDEDSDLSA SL+SRI TCFNYLWIPFDALETFLPK+S QR++YE+D+
Sbjct: 299 TVKAFNPCIVIVVDEDSDLSAPSLSSRITTCFNYLWIPFDALETFLPKDSSQRIEYESDI 358

Query: 361 GHKIENIISFEGFQRIERSESGSKLSQRMKNAGFFSLPFCEETVKEVRSLLDEHASGWGM 420
           GHKIENIISFEG QRIER E G K+S+RMKNAGFFS+PFCE+T+ EVR LL+EHASGWGM
Sbjct: 359 GHKIENIISFEGLQRIERLEPGIKVSERMKNAGFFSVPFCEDTIGEVRCLLEEHASGWGM 418

Query: 421 KR-EEEMLALTWKGHNSVFATAWVPNGLED 449
           KR E+ ML LTWKGHNSVFATAWVP  L+D
Sbjct: 419 KRGEDHMLMLTWKGHNSVFATAWVPIDLQD 448

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224093250|ref|XP_002309852.1| GRAS family transcription factor [Populus trichocarpa] gi|222852755|gb|EEE90302.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255549291|ref|XP_002515699.1| DELLA protein DWARF8, putative [Ricinus communis] gi|223545136|gb|EEF46646.1| DELLA protein DWARF8, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225447398|ref|XP_002275420.1| PREDICTED: scarecrow-like protein 32-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147789235|emb|CAN78012.1| hypothetical protein VITISV_041420 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356542103|ref|XP_003539510.1| PREDICTED: scarecrow-like protein 32-like [Glycine max] Back     alignment and taxonomy information
>gi|356549990|ref|XP_003543373.1| PREDICTED: scarecrow-like protein 32-like [Glycine max] Back     alignment and taxonomy information
>gi|357453549|ref|XP_003597052.1| GRAS family transcription factor [Medicago truncatula] gi|355486100|gb|AES67303.1| GRAS family transcription factor [Medicago truncatula] Back     alignment and taxonomy information
>gi|449453664|ref|XP_004144576.1| PREDICTED: scarecrow-like protein 32-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|413945919|gb|AFW78568.1| hypothetical protein ZEAMMB73_903974 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query449
TAIR|locus:2083073410 AT3G49950 "AT3G49950" [Arabido 0.538 0.590 0.462 3.3e-96
TAIR|locus:2120106531 SHR "AT4G37650" [Arabidopsis t 0.481 0.406 0.349 1.7e-43
TAIR|locus:2008086482 SCL3 "AT1G50420" [Arabidopsis 0.356 0.331 0.341 5.3e-36
TAIR|locus:2164783490 PAT1 "AT5G48150" [Arabidopsis 0.458 0.420 0.317 4.6e-35
TAIR|locus:1009023400202 AT5G67411 "AT5G67411" [Arabido 0.253 0.564 0.416 1.3e-34
TAIR|locus:2026982593 SCL1 "AT1G21450" [Arabidopsis 0.405 0.306 0.296 1.7e-34
TAIR|locus:2044973413 SCL21 "AT2G04890" [Arabidopsis 0.396 0.430 0.271 2.2e-32
TAIR|locus:2008076597 SCL5 "AT1G50600" [Arabidopsis 0.461 0.346 0.3 4.5e-32
TAIR|locus:2040701718 AT2G37650 [Arabidopsis thalian 0.391 0.245 0.313 1.2e-29
TAIR|locus:2025022769 SCL14 "SCARECROW-like 14" [Ara 0.403 0.235 0.267 1.3e-27
TAIR|locus:2083073 AT3G49950 "AT3G49950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 543 (196.2 bits), Expect = 3.3e-96, Sum P(2) = 3.3e-96
 Identities = 124/268 (46%), Positives = 162/268 (60%)

Query:    19 LFNTGQSSIPGALRGCLGSLDGACIEKLLLHCASALESNDVTLAQQVMWVLNNVASPVGD 78
             + N  +   P  LRGC G  D   +E+LLLHCA+A++SND  L  Q++WVLNN+A P GD
Sbjct:     6 ILNPTRFPSPKPLRGC-G--DANFMEQLLLHCATAIDSNDAALTHQILWVLNNIAPPDGD 62

Query:    79 PNQRLTSSFLRALISRASKVCPT---TLSNFNGSSTNHRRLMSVTELAGYVDLIPWHRFG 135
               QRLTS+FLRAL+SRA    PT   T+S    +   HR   SV ELA +VDL PWHRFG
Sbjct:    63 STQRLTSAFLRALLSRAVSKTPTLSSTISFLPQADELHR--FSVVELAAFVDLTPWHRFG 120

Query:   136 FCASNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKR-PEGPPSLRITVPYSRPPV 194
             F A+N+AI  A++GYS VHI+D S+THCMQ PTLIDA+A R  + PP L++TV  S    
Sbjct:   121 FIAANAAILTAVEGYSTVHIVDLSLTHCMQIPTLIDAMASRLNKPPPLLKLTVVSSSDHF 180

Query:   195 PPLLNVSAEEVGLRLGNFAKFRDVPFEFKVIDDSSSAGDIVMSKXXXXXXXXXXXXXXXX 254
             PP +N+S EE+G +L NFA  R++  EF ++  + S G                      
Sbjct:   181 PPFINISYEELGSKLVNFATTRNITMEFTIVPSTYSDG-------------FSSLLQQLR 227

Query:   255 XTPSILNLREDEALVINCQNWLRYLYDD 282
               PS  N    EALV+NC   LRY+ ++
Sbjct:   228 IYPSSFN----EALVVNCHMMLRYIPEE 251
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
TAIR|locus:2120106 SHR "AT4G37650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008086 SCL3 "AT1G50420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164783 PAT1 "AT5G48150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1009023400 AT5G67411 "AT5G67411" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026982 SCL1 "AT1G21450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044973 SCL21 "AT2G04890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008076 SCL5 "AT1G50600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040701 AT2G37650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025022 SCL14 "SCARECROW-like 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SN22SCL32_ARATHNo assigned EC number0.46550.87970.9634yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00026092001
SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (505 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 1e-100
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  303 bits (778), Expect = e-100
 Identities = 138/407 (33%), Positives = 207/407 (50%), Gaps = 43/407 (10%)

Query: 43  IEKLLLHCASALESNDVTLAQQVMWVLNNVASPVGDPNQRLTSSFLRALISRASKVCPTT 102
           +  LLL CA A+ S D++LAQ ++  LN +ASP GDP QRL + F  AL +R ++   + 
Sbjct: 1   LVHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLARSGSSI 60

Query: 103 LSNFNGSSTNHRRLMSVTELA--GYVDLIPWHRFGFCASNSAIFKAIQGYSKVHILDFSI 160
            S     S +          A   + ++ P+ +FG   +N AI +A +G  +VHI+DF I
Sbjct: 61  YSALP-PSPSTPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEERVHIIDFDI 119

Query: 161 THCMQWPTLIDALAKRPEGPPSLRIT--VPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDV 218
              +QWP+LI ALA RP GPP LRIT            L     EE G RL  FA    V
Sbjct: 120 GQGLQWPSLIQALASRPGGPPHLRITGIGSPQFSSAEEL-----EETGDRLAQFADSLGV 174

Query: 219 PFEFKVIDDSSSAGDIVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQNWLRY 278
           PFEF           +V  +LE                  +L++R  EAL +NC   L  
Sbjct: 175 PFEFNP---------LVAKRLE-------------DLDLEMLDVRPGEALAVNCVFALHR 212

Query: 279 LYDDEGRGINAQDASLRDAFLHLIKGLNPCIMIVVDEDSDLSASSLTSRIATCFNYLWIP 338
           L D+     +         FL L+K LNP ++ +V+++++ +++   +R     +Y    
Sbjct: 213 LLDESVSLESP-------TFLRLVKSLNPKVVTLVEQEANHNSAPFLARFVEALHYYSAL 265

Query: 339 FDALETFLPKESRQRLDYEADV-GHKIENIISFEGFQRIERSESGSKLSQRMKNAGFFSL 397
           FD+LE  LP++S +R   E ++ G +I N+++ EG +R+ER E+  K  +RM+ AGF  +
Sbjct: 266 FDSLEATLPRDSEERRKVERELLGREIVNVVACEGAERVERHETFGKWRERMRRAGFRPV 325

Query: 398 PFCEETVKEVRSLLDEHASGWGMKREEEM--LALTWKGHNSVFATAW 442
           P  E  VK+ + LL  +    G + EE+   L L WKG   V A+AW
Sbjct: 326 PLSEFAVKQAKLLLRLY-YVDGYRVEEDNGSLVLGWKGRPLVAASAW 371

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 449
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 97.13
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 95.64
TIGR00740239 methyltransferase, putative. A simple BLAST search 95.45
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 94.93
PLN02233261 ubiquinone biosynthesis methyltransferase 94.33
PRK06202232 hypothetical protein; Provisional 92.26
COG2226238 UbiE Methylase involved in ubiquinone/menaquinone 90.69
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 89.77
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 89.32
PLN02336475 phosphoethanolamine N-methyltransferase 89.28
TIGR02072240 BioC biotin biosynthesis protein BioC. This enzyme 89.26
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 89.11
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 87.75
PRK08317241 hypothetical protein; Provisional 87.63
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 87.43
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 86.37
smart00138264 MeTrc Methyltransferase, chemotaxis proteins. Meth 85.62
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 84.62
PLN02336 475 phosphoethanolamine N-methyltransferase 84.58
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 83.56
PF00891241 Methyltransf_2: O-methyltransferase; InterPro: IPR 83.52
PF12847112 Methyltransf_18: Methyltransferase domain; PDB: 3G 82.79
TIGR03438301 probable methyltransferase. This model represents 82.53
PRK12335287 tellurite resistance protein TehB; Provisional 82.15
PLN02244340 tocopherol O-methyltransferase 81.21
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=4.5e-111  Score=865.73  Aligned_cols=370  Identities=38%  Similarity=0.611  Sum_probs=340.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCCcchhHHHHHHHHHHhhhhccCCC-cccCCCCCCC-cccccccHH
Q 041891           43 IEKLLLHCASALESNDVTLAQQVMWVLNNVASPVGDPNQRLTSSFLRALISRASKVCPT-TLSNFNGSST-NHRRLMSVT  120 (449)
Q Consensus        43 l~~LLl~CA~Av~~gd~~~A~~lL~~L~~~aS~~Gd~~qRla~yF~eAL~~Rl~~~~~~-~~~~~~~~~~-~~~~~~~~~  120 (449)
                      |++||++||+||+.||.+.|+.+|++|++++||+|||+||+|+||++||.+|+.+ +++ .|..+..... +........
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~-~~~~~~~~~~~~~~~~~~~~~~~~   79 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSG-SGPGLYSALPPSSPSPSESSEQLA   79 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhc-cCcccccCCCCccccccchHHHHH
Confidence            5899999999999999999999999999999999999999999999999999999 444 5655433221 112233456


Q ss_pred             HHHHHHhcCChhhhHHHHhHHHHHhhhcCCCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchH
Q 041891          121 ELAGYVDLIPWHRFGFCASNSAIFKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNV  200 (449)
Q Consensus       121 ~~~~f~e~~P~~kfa~~tANqAIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~  200 (449)
                      +++.||+.|||+||||||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||+++.+.   ...
T Consensus        80 a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~---~~~  156 (374)
T PF03514_consen   80 AYQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSG---SAD  156 (374)
T ss_pred             HHHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCC---cHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999985321   356


Q ss_pred             HHHHHHHHHHHhHhhCCCceEEEEeecCCCCccchhcccccCcchhhhhhhccCCCCcccccCCCceEEEEeeccccccc
Q 041891          201 SAEEVGLRLGNFAKFRDVPFEFKVIDDSSSAGDIVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQNWLRYLY  280 (449)
Q Consensus       201 ~l~etg~rL~~fA~~~gv~FeF~~v~~~~~~~~~~~~~~~~~~~~~~e~ll~~l~~~~~l~~~~~EaLaVN~~~~Lh~l~  280 (449)
                      .+++||+||.+||+++||||||++|...+                 ||    ++ ++++|++++||+|||||+|+||||.
T Consensus       157 ~l~~~g~rL~~fA~~lgv~fef~~v~~~~-----------------~e----~l-~~~~l~~~~~E~laVn~~~~Lh~l~  214 (374)
T PF03514_consen  157 ELQETGRRLAEFARSLGVPFEFHPVVVES-----------------LE----DL-DPSMLRLRPGEALAVNCMFQLHHLL  214 (374)
T ss_pred             HHHHHHHHHHHHHHHcCccEEEEecccCc-----------------hh----hC-CHHHhCccCCcEEEEEeehhhhhhc
Confidence            89999999999999999999999986532                 44    56 8899999999999999999999999


Q ss_pred             CCCCCCcCCCCCchHHHHHHHHHhcCCcEEEEeeecCCCCCCchHHHHHHHHhHHHHHHhhhhhcCCCCcHHHHHHhh-h
Q 041891          281 DDEGRGINAQDASLRDAFLHLIKGLNPCIMIVVDEDSDLSASSLTSRIATCFNYLWIPFDALETFLPKESRQRLDYEA-D  359 (449)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~L~~ir~L~P~vvv~vE~ea~~n~~~F~~RF~eaL~yYsalFdsLda~l~~~s~eR~~iE~-~  359 (449)
                      +++...     .++++.||+.||+|+|+|||++|+|+|||+|+|++||.|||+||+++|||||+++|+++++|..+|+ +
T Consensus       215 ~~~~~~-----~~~~~~~L~~ir~L~P~vvv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~  289 (374)
T PF03514_consen  215 DESGAL-----ENPRDAFLRVIRSLNPKVVVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLF  289 (374)
T ss_pred             cccccc-----cchHHHHHHHHHhcCCCEEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence            886432     4689999999999999999999999999999999999999999999999999999999999999999 6


Q ss_pred             hHhhhhhhhhccCCcccccccchhHHHHHHHhCCCcccCCChHHHHHHHHHHhhcC-CCCcEEEeCCeEEEEeCCCeeEE
Q 041891          360 VGHKIENIISFEGFQRIERSESGSKLSQRMKNAGFFSLPFCEETVKEVRSLLDEHA-SGWGMKREEEMLALTWKGHNSVF  438 (449)
Q Consensus       360 ~g~eI~niVA~eG~~R~ERhE~~~~W~~rm~~aGF~~~~ls~~~~~qak~ll~~~~-~g~~~~~e~~~l~LgWk~~pL~~  438 (449)
                      ||+||+|||||||.+|+||||++++|+.||++|||+++|+|++++.|||.||+.|+ .||++.+++|||+||||++||++
T Consensus       290 ~~~eI~niVa~eg~~R~eR~e~~~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~  369 (374)
T PF03514_consen  290 FGREIMNIVACEGEERVERHERLEQWRRRMRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVA  369 (374)
T ss_pred             hhhHHHHhhhcccccccccccchhHHHHHHHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEE
Confidence            99999999999999999999999999999999999999999999999999999998 78999999999999999999999


Q ss_pred             Eecce
Q 041891          439 ATAWV  443 (449)
Q Consensus       439 vSaW~  443 (449)
                      +||||
T Consensus       370 ~SaWr  374 (374)
T PF03514_consen  370 ASAWR  374 (374)
T ss_pred             EeCcC
Confidence            99997

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>TIGR02072 BioC biotin biosynthesis protein BioC Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>PRK08317 hypothetical protein; Provisional Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>smart00138 MeTrc Methyltransferase, chemotaxis proteins Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A Back     alignment and domain information
>TIGR03438 probable methyltransferase Back     alignment and domain information
>PRK12335 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PLN02244 tocopherol O-methyltransferase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 72/509 (14%), Positives = 134/509 (26%), Gaps = 148/509 (29%)

Query: 1   MKAELRA---NTSSISLQNPSLFNTGQSSIPG---------ALRGCLGSLDGACIEKLLL 48
           +K E R     T     Q   L+N  Q               LR  L  L  A  + +L+
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA--KNVLI 155

Query: 49  H----C------ASALESNDVTLAQ--QVMWV-LNNVASPVG--DPNQRLTSSFLRALIS 93
                            S  V      ++ W+ L N  SP    +  Q+L         S
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 94  RASKVCPTTLSNFNGSSTNHRRLMSVTELAGYVD--LI------PWH--RFGF-C----- 137
           R+       L   +      RRL+       Y +  L+            F   C     
Sbjct: 216 RSDHSSNIKL-RIHSIQAELRRLLK---SKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271

Query: 138 ASNSAIFKAIQGYSKVHI----LDFSITH------CMQW----------------PTLID 171
                +   +   +  HI       ++T        +++                P  + 
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 172 ALAKRPEGPPSLRITVPYSRPPVPPLLNV--------SAEEVGLRLGNFAKFR-DVPFEF 222
            +A+      +      +       L  +           E        + F        
Sbjct: 332 IIAESIRDGLA-TWD-NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389

Query: 223 KVI-----DDSSSAGDIVMSKLESSS-----------SFHFESLLSHLSTPSILNLREDE 266
            ++     D   S   +V++KL   S           S    S+   L    + N     
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP--SIYLELKVK-LENEYALH 446

Query: 267 ALVINCQNWLRYLYDDEGRGINAQD--------------------ASLRDAFLHL--IKG 304
             +++  N  +  +D +       D                       R  FL    ++ 
Sbjct: 447 RSIVDHYNIPKT-FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505

Query: 305 LNPCIMIVVDEDSDLSASSLTSRIATCFNYL-WI----P-----FDALETFLPKESRQRL 354
                 I  D  +  ++ S+ + +     Y  +I    P      +A+  FLPK     +
Sbjct: 506 -----KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560

Query: 355 DYE-ADVGHKI----ENIISFEGFQRIER 378
             +  D+        +  I  E  ++++R
Sbjct: 561 CSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query449
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 97.46
3dtn_A234 Putative methyltransferase MM_2633; structural gen 96.31
3dh0_A219 SAM dependent methyltransferase; cystal structure, 95.8
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 95.72
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 95.72
3dp7_A363 SAM-dependent methyltransferase; structural genomi 95.69
2r3s_A335 Uncharacterized protein; methyltransferase domain, 95.36
1vl5_A260 Unknown conserved protein BH2331; putative methylt 95.3
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 95.24
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 94.95
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 94.54
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 94.4
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 94.12
3f4k_A257 Putative methyltransferase; structural genomics, P 94.12
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 94.04
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 94.04
1xxl_A239 YCGJ protein; structural genomics, protein structu 93.77
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 93.42
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 93.06
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 93.0
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 92.95
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 92.59
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 92.24
3hnr_A220 Probable methyltransferase BT9727_4108; structural 92.1
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 91.99
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 91.95
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 91.85
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 91.83
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 91.78
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 91.48
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 90.97
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 90.82
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 90.29
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 89.98
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 89.97
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 88.83
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 88.68
3ege_A261 Putative methyltransferase from antibiotic biosyn 88.32
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 87.84
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 87.27
3gu3_A284 Methyltransferase; alpha-beta protein, structural 87.05
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 86.52
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 85.48
3ccf_A279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 85.48
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 85.34
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 84.7
3m70_A286 Tellurite resistance protein TEHB homolog; structu 84.68
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 83.82
4htf_A285 S-adenosylmethionine-dependent methyltransferase; 83.64
3ocj_A305 Putative exported protein; structural genomics, PS 83.57
3dli_A240 Methyltransferase; PSI-II, NYSGXRC, structural gen 83.23
3frh_A253 16S rRNA methylase; methyltransferase domain, heli 82.71
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 81.49
2p7i_A250 Hypothetical protein; putative methyltransferase, 81.46
3thr_A293 Glycine N-methyltransferase; GNMT, folate, methylt 81.36
2vdw_A302 Vaccinia virus capping enzyme D1 subunit; nucleoti 80.74
3g5t_A299 Trans-aconitate 3-methyltransferase; structural ge 80.72
3p9n_A189 Possible methyltransferase (methylase); RV2966C, a 80.65
3giw_A277 Protein of unknown function DUF574; rossmann-fold 80.37
3fzg_A200 16S rRNA methylase; methyltransferase, plasmid, tr 80.26
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
Probab=97.46  E-value=0.0031  Score=60.68  Aligned_cols=110  Identities=16%  Similarity=0.256  Sum_probs=64.0

Q ss_pred             CeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchHHHHHHHHHHHHhHhhCCCceEEEEeecCCC
Q 041891          151 SKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDVPFEFKVIDDSSS  230 (449)
Q Consensus       151 ~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg~rL~~fA~~~gv~FeF~~v~~~~~  230 (449)
                      ..-+|+|+|.|.|.    +...|+++- ++|..+||||+.++       ..++...+++.++-  .+.+++|  +..+  
T Consensus        70 ~~~~vLDlGcGtG~----~~~~la~~~-~~~~~~v~gvD~s~-------~ml~~A~~~~~~~~--~~~~v~~--~~~D--  131 (261)
T 4gek_A           70 PGTQVYDLGCSLGA----ATLSVRRNI-HHDNCKIIAIDNSP-------AMIERCRRHIDAYK--APTPVDV--IEGD--  131 (261)
T ss_dssp             TTCEEEEETCTTTH----HHHHHHHTC-CSSSCEEEEEESCH-------HHHHHHHHHHHTSC--CSSCEEE--EESC--
T ss_pred             CCCEEEEEeCCCCH----HHHHHHHhc-CCCCCEEEEEECCH-------HHHHHHHHHHHhhc--cCceEEE--eecc--
Confidence            34579999999984    455666653 34678999999753       25666655554331  1223444  3321  


Q ss_pred             CccchhcccccCcchhhhhhhccCCCCcccccCCCceEEEEeecccccccCCCCCCcCCCCCchHHHHHHHH-HhcCCcE
Q 041891          231 AGDIVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQNWLRYLYDDEGRGINAQDASLRDAFLHLI-KGLNPCI  309 (449)
Q Consensus       231 ~~~~~~~~~~~~~~~~~e~ll~~l~~~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~~~~~~~~L~~i-r~L~P~v  309 (449)
                                      +.    ++      ...+-.+++  |.+.|||+.++           .+..+|+.| |.|+|.-
T Consensus       132 ----------------~~----~~------~~~~~d~v~--~~~~l~~~~~~-----------~~~~~l~~i~~~LkpGG  172 (261)
T 4gek_A          132 ----------------IR----DI------AIENASMVV--LNFTLQFLEPS-----------ERQALLDKIYQGLNPGG  172 (261)
T ss_dssp             ----------------TT----TC------CCCSEEEEE--EESCGGGSCHH-----------HHHHHHHHHHHHEEEEE
T ss_pred             ----------------cc----cc------cccccccce--eeeeeeecCch-----------hHhHHHHHHHHHcCCCc
Confidence                            11    22      222223444  45678998653           366777776 6689986


Q ss_pred             EE-EeeecC
Q 041891          310 MI-VVDEDS  317 (449)
Q Consensus       310 vv-~vE~ea  317 (449)
                      .. +.|.-.
T Consensus       173 ~lii~e~~~  181 (261)
T 4gek_A          173 ALVLSEKFS  181 (261)
T ss_dssp             EEEEEEEBC
T ss_pred             EEEEEeccC
Confidence            54 456543
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Back     alignment and structure
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Back     alignment and structure
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Back     alignment and structure
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Back     alignment and structure
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Back     alignment and structure
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* Back     alignment and structure
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query449
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 97.13
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 96.94
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 96.8
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 95.05
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 94.9
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 94.55
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 94.52
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 94.44
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 94.4
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 93.64
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 93.54
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 92.69
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 92.45
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 91.25
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 90.73
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 90.48
d1kyza2243 Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra 89.02
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 86.99
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 86.71
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 83.18
d1xvaa_292 Glycine N-methyltransferase {Rat (Rattus norvegicu 82.95
d1g6q1_328 Arginine methyltransferase, HMT1 {Baker's yeast (S 81.08
d1oria_316 Protein arginine N-methyltransferase 1, PRMT1 {Rat 81.01
d2avna1246 Hypothetical methyltransferase TM1389 {Thermotoga 80.37
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.13  E-value=0.003  Score=56.41  Aligned_cols=107  Identities=16%  Similarity=0.225  Sum_probs=65.1

Q ss_pred             CCeeEEEEcccCCCCchHHHHHHHhcCCCCCCeeEEeeccCCCCCCCcchHHHHHHHHHHHHhHhhCCCceEEEEeecCC
Q 041891          150 YSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVPPLLNVSAEEVGLRLGNFAKFRDVPFEFKVIDDSS  229 (449)
Q Consensus       150 ~~~VHIIDf~i~~G~QWp~LiqaLa~R~~gPP~LrIT~I~~~~~~~~~~~~~l~etg~rL~~fA~~~gv~FeF~~v~~~~  229 (449)
                      ...-||+|+|.|.|.    +...|++.. ..|..++|||+.++       ..++...+++.    ..+....++.+... 
T Consensus        38 ~~~~~vLDlGCGtG~----~~~~l~~~~-~~~~~~v~giD~S~-------~ml~~A~~~~~----~~~~~~~~~~~~~d-  100 (225)
T d1im8a_          38 TADSNVYDLGCSRGA----ATLSARRNI-NQPNVKIIGIDNSQ-------PMVERCRQHIA----AYHSEIPVEILCND-  100 (225)
T ss_dssp             CTTCEEEEESCTTCH----HHHHHHHTC-CCSSCEEEEECSCH-------HHHHHHHHHHH----TSCCSSCEEEECSC-
T ss_pred             CCCCEEEEeccchhh----HHHHHHHhh-cCCCCceEEeCCCH-------HHHHHHHHHhH----hhcccchhhhccch-
Confidence            345689999999984    334455432 24679999999753       25665555554    33455555555431 


Q ss_pred             CCccchhcccccCcchhhhhhhccCCCCcccccCCCceEEEEeecccccccCCCCCCcCCCCCchHHHHHHHH-HhcCCc
Q 041891          230 SAGDIVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQNWLRYLYDDEGRGINAQDASLRDAFLHLI-KGLNPC  308 (449)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~e~ll~~l~~~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~~~~~~~~L~~i-r~L~P~  308 (449)
                                       ..    ++        ..+..-+|-|.+.||++..+.           ...+|+.| |.|+|.
T Consensus       101 -----------------~~----~~--------~~~~~d~i~~~~~l~~~~~~d-----------~~~~l~~i~~~Lkpg  140 (225)
T d1im8a_         101 -----------------IR----HV--------EIKNASMVILNFTLQFLPPED-----------RIALLTKIYEGLNPN  140 (225)
T ss_dssp             -----------------TT----TC--------CCCSEEEEEEESCGGGSCGGG-----------HHHHHHHHHHHEEEE
T ss_pred             -----------------hh----cc--------ccccceeeEEeeeccccChhh-----------HHHHHHHHHHhCCCC
Confidence                             11    11        223445567778899986542           45667666 678999


Q ss_pred             EEEEe
Q 041891          309 IMIVV  313 (449)
Q Consensus       309 vvv~v  313 (449)
                      -.++.
T Consensus       141 G~li~  145 (225)
T d1im8a_         141 GVLVL  145 (225)
T ss_dssp             EEEEE
T ss_pred             ceeec
Confidence            76555
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure