Citrus Sinensis ID: 041908

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880---
Protein Sequence
MGRYLIIFKFSLWVAIAFVQMHGLKSCLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCSWERIKCNVTTANYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPAVLKNCSTDLPPPPPMTPAEEDESAIDMVAFNWSFAVSYVTVIVGLLALLFLNSYWHRQWFFLID
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEcccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEcccccccEEccHHHHcccccccEEEccccccccccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccccEEcccccccccccEEEccccEEEEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEccccccEEcccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHcccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHHHHHHHHcccccccccccccEEEccccccccccccccEEEEccccHHHHccEEEEEEEEEccccccccccccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEEcccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEEEEHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEcccccccHHHcccccEEEEEcccccccccccHHHHccccccEEEccccccccccccHHHHccccccEEEEcccccccccccHHHHcHHHHHcccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHHHHcccccEEEcccccccccccHHcccccEEEEEEccccccccccHHHHccccccEEEEccccccccccHHHHccccHHHHHHHcccccccccHHHcccccccEEEcccccccccccHHHHHHcccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHHHccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHccHHHHHHHHccccccccccccccccccEEEccccccccccccccccccccEEEEcccccccccccHHHcccccEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHcccccccHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHEcc
Coil and Loop (DISEMBL)
MGRYLIIFKFSLWVAIAFVQMHGLkscldnerigLLEIKTFIKSVSDMQFADAILVSWvdnrtsdccswerikcnvttanynnngslkQLKILNIGFNSFSESLVPLLTSLTSltslflegnnlgvgfkpmkvlpnlrnlevldlsgngligsltMQGEKLELLNNKCREMNARICELKNLVELNLswnkldgslpqclsnltylRVLDltsnqlsgnlpisVFANLTSLEYLslsgnnfqgsfSLSVLANHSRLEVLQISRLQietenfpwlprfqlkvlnlrrcnisgtipsflqyqydlryidlshnnlagtfptwllqnntkLEFLFLFNNFLKGllhlpdskrDLLHLVISNnnfigmlpdnfgmiLPELVYLdmsqnsfegsippsmgyTVRLLFLDlssnnfsgelpkqfLTGCVSLAFMNvshnyfggqifpkymSMTQLAWLYLNDNQFTGRLeegllnapslhildvsnnmlsgqlphwvgnfsNLDVLLMSRnslegdvsvplsnlqVARILdisenklygplefsfnhssSLWHLFLhnnslngsipsalfqssqlmtldlrdnefsgnipplinedSNLRALLLRGnnlqgnipqQLCHLRKIAIVDISynlldgsipscftniwpwmeegdpfngfvFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMtgldlssneltgeiPSAIGYLQELHALNLshnhlsgsiprsfsnlkMIESMDLSYnklrgqiplelseLNYLAIFNVsyndlsgptpntkqfanfdesnyrgnlnlcgpavlkncstdlpppppmtpaeedesaiDMVAFNWSFAVSYVTVIVGLLALLFLNSYWHRQWFFLID
Flexible Loop (DISEMBL)
MGRYLIIFKFSLWVAIAFVQMHGLKSCLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCSWERIKCNVttanynnngsLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLqietenfpwLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKfmaknryesykgGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPAVLKNCSTDLPPPPPMTPAEEDESAIDMVAFNWSFAVSYVTVIVGLLALLFLNSYWHRQWFFLID
Low Complexity Region (SEG)
MGRYLIIFKFSLWVAIAFVQMHGLKSCLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCSWERIKCNVTTANYNNNGSLKQLKILNIGFNSFseslvplltsltsltslflEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQnntkleflflfnnflkgllhlPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRllfldlssnnfsGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSnlralllrgnnlqgnIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQElhalnlshnhlsGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPAVLKNCSTDLpppppMTPAEEDESAIDMVAFNWSFAVSYVTVIVGLLALLFLNSYWHRQWFFLID
Disordered region (IsUnstruct)
**RYLIIFKFSLWVAIAFVQMHGLKSCLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCSWERIKCNVTTANYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSG******QFANFDESNYRGNLNLCGPAVLK*********************IDMVAFNWSFAVSYVTVIVGLLALLFLNSYWHRQWFFLI*
Disordered Region (DISOPRED)
MGRYLIIFKFSLWVAIAFVQMHGLKSCLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCSWERIKCNVTTANYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPW**********VFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPA****************************AFNWSFAVSYVTVIVGLLALLFLNSYWHRQWFFLID
Disordered Region (DISEMBL)
MGRYLIIFKFSLWVAIAFVQMHGLKSCLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCSWERIKCNVTTANYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPAVLKNCSTDLPPPPPMTPAEEDESAIDMVAFNWSFAVSYVTVIVGLLALLFLNSYWHRQWFFLID
Disordered Region (DISPRO)
MGRYLIIFKFSLWVAIAFVQMHGLKSCLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCSWERIKCNVTTANYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPAVLKNC*******************IDMVAFNWSFAVSYVTVIVGLLALLFLNSYWHRQWFFLID
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRYLIIFKFSLWVAIAFVQMHGLKSCLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCSWERIKCNVTTANYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPAVLKNCSTDLPPPPPMTPAEEDESAIDMVAFNWSFAVSYVTVIVGLLALLFLNSYWHRQWFFLID
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	883	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.784	0.554	0.300	1e-69
Q9C9H7	847	Receptor-like protein 12	no	no	0.828	0.864	0.287	4e-69
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.707	0.567	0.325	2e-65
Q9FL28	1173	LRR receptor-like serine/	no	no	0.810	0.610	0.290	1e-64
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.788	0.555	0.318	3e-64
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.800	0.585	0.298	4e-61
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.738	0.540	0.316	8e-61
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.711	0.525	0.323	3e-58
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.694	0.563	0.300	2e-57
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.674	0.524	0.317	2e-55

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  265 bits (677), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 239/796 (30%), Positives = 378/796 (47%), Gaps = 103/796 (12%)

Query: 98  NSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQ 157
           +++ E  +P      S  ++F    N+  G  P + L  L NLE+L+L+ N L G     
Sbjct: 200 DNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAE-LGRLENLEILNLANNSLTG----- 253

Query: 158 GEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSG 217
                       E+ +++ E+  L  L+L  N+L G +P+ L++L  L+ LDL++N L+G
Sbjct: 254 ------------EIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTG 301

Query: 218 NLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQ 277
            +P   F N++ L  L L+ N+  GS   S+ +N++ LE L +S  Q+            
Sbjct: 302 EIP-EEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQL------------ 348

Query: 278 LKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFL 337
                      SG IP  L     L+ +DLS+N+LAG+ P  L +   +L  L+L NN L
Sbjct: 349 -----------SGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFEL-VELTDLYLHNNTL 396

Query: 338 KGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTV 397
           +G L  P          ISN              L  L +L +  N+ EG +P  +    
Sbjct: 397 EGTLS-PS---------ISN--------------LTNLQWLVLYHNNLEGKLPKEISALR 432

Query: 398 RLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQ 457
           +L  L L  N FSGE+P++ +  C SL  +++  N+F G+I P    + +L  L+L  N+
Sbjct: 433 KLEVLFLYENRFSGEIPQE-IGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNE 491

Query: 458 FTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNL 517
             G L   L N   L+ILD+++N LSG +P   G    L+ L++  NSL+G++   L +L
Sbjct: 492 LVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISL 551

Query: 518 QVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNE 577
           +    +++S N+L G +      SSS     + NN     IP  L  S  L  L L  N+
Sbjct: 552 RNLTRINLSHNRLNGTIH-PLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQ 610

Query: 578 FSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNI 637
            +G IP  + +   L  L +  N L G IP QL   +K+  +D++ N L G IP      
Sbjct: 611 LTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIP------ 664

Query: 638 WPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNR---ELRQRV------ 688
            PW+ +              VE  P  +  +N T  L+ S + N     + Q +      
Sbjct: 665 -PWLGKLSQLGELKLSSNQFVESLP--TELFNCTKLLVLSLDGNSLNGSIPQEIGNLGAL 721

Query: 689 EVKFMAKNRYES---YKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELH-ALNLSHNHLS 744
            V  + KN++        G L  +  L LS N LTGEIP  IG LQ+L  AL+LS+N+ +
Sbjct: 722 NVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFT 781

Query: 745 GSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANF 804
           G IP +   L  +E++DLS+N+L G++P  + ++  L   NVS+N+L G     KQF+ +
Sbjct: 782 GDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL--KKQFSRW 839

Query: 805 DESNYRGNLNLCGPAVLKNCSTDLPPPPPMTPAEEDESAIDMVAFNWSFAVSYVTVIVGL 864
              ++ GN  LCG + L  C+           +   +  +   +     A+S +T I GL
Sbjct: 840 PADSFLGNTGLCG-SPLSRCNR--------VRSNNKQQGLSARSVVIISAISALTAI-GL 889

Query: 865 LALLFLNSYWHRQWFF 880
           + L+    +  R  FF
Sbjct: 890 MILVIALFFKQRHDFF 905

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  263 bits (673), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 263/916 (28%), Positives = 400/916 (43%), Gaps = 184/916 (20%)

Query: 27  CLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCSWERIKCNVTTA------- 79
           C D++R  LLE +      +     +     W  N+++DCC W  + CN  +        
Sbjct: 34  CRDDQRDALLEFRGEFPINASWHIMNQWRGPW--NKSTDCCLWNGVTCNDKSGQVISLDI 91

Query: 80  ------NY-------------------NNN---------GSLKQLKILNIGFNSFSESLV 105
                 NY                   N N         G+L  L ++N+ FN F   + 
Sbjct: 92  PNTFLNNYLKTNSSLFKLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIP 151

Query: 106 PLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELL- 164
             + +L  L  L L  NN+  G  P   L NL  L  L+L  N L+G +      L+ L 
Sbjct: 152 ASIGNLNQLRHLIL-ANNVLTGEIP-SSLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLR 209

Query: 165 ------NNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGN 218
                 NN   E+ + +  L NLV L L+ N+L G +P  + NL  LRV+   +N LSGN
Sbjct: 210 NLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGN 269

Query: 219 LPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQL 278
           +PIS FANLT L    LS NNF                          T  FP    F +
Sbjct: 270 IPIS-FANLTKLSIFVLSSNNF--------------------------TSTFP----FDM 298

Query: 279 KVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLK 338
            +                   ++L Y D+S+N+ +G FP  LL     LE ++L  N   
Sbjct: 299 SIF------------------HNLEYFDVSYNSFSGPFPKSLLL-IPSLESIYLQENQFT 339

Query: 339 GLLHLPD--SKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYT 396
           G +   +  S   L  L++  N   G +P++   +L  L  LD+S N+F G+IPP++   
Sbjct: 340 GPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLL-NLEELDISHNNFTGAIPPTISKL 398

Query: 397 VRLLFLDLSSNNFSGELPKQFLTGCV-SLAFMNVSHNYFGGQIFPKYMSMTQ----LAWL 451
           V LL LDLS NN  GE+P      C+  L  M +SHN F       + + +Q    +  L
Sbjct: 399 VNLLHLDLSKNNLEGEVP-----ACLWRLNTMVLSHNSFS-----SFENTSQEEALIEEL 448

Query: 452 YLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVS 511
            LN N F G +   +    SL  LD+SNN+ SG +P  + NFS             G + 
Sbjct: 449 DLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFS-------------GSI- 494

Query: 512 VPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTL 571
                    + L++ +N   G L   F+ ++ L  L + +N L G  P +L     L  +
Sbjct: 495 ---------KELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELV 545

Query: 572 DLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHL--RKIAIVDISYNLLDGS 629
           ++  N+     P  +    +L  L LR N   G +  +   +  + + I+DIS+N   G+
Sbjct: 546 NVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGT 605

Query: 630 IPSCFTNIWPWM----EEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELR 685
           +P  + + W  M    EE D +         + E +    +YY+  + ++  G D    R
Sbjct: 606 LPPYYFSNWKDMTTLTEEMDQY---------MTEFWRYADSYYHE-MEMVNKGVDMSFER 655

Query: 686 QRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSG 745
            R + +                    +D S N++ G IP ++GYL+EL  LNLS N  + 
Sbjct: 656 IRRDFR-------------------AIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTS 696

Query: 746 SIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFD 805
            IPR  +NL  +E++D+S NKL GQIP +L+ L++L+  N S+N L GP P   QF    
Sbjct: 697 VIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQK 756

Query: 806 ESNYRGNLNLCGPAVLKNCSTDLPPPPPMTPAEEDESAIDMVAFNW-SFAVSY-VTVIVG 863
            S++  N  L G   L++   D     P +   ED S  +   FNW + A++Y   V+ G
Sbjct: 757 CSSFLDNPGLYG---LEDICRDTGALNPTSQLPEDLSEAEENMFNWVAAAIAYGPGVLCG 813

Query: 864 LLALLFLNSYWHRQWF 879
           L+   F  S+ H +WF
Sbjct: 814 LVIGHFYTSHNH-EWF 828

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  251 bits (641), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 227/697 (32%), Positives = 328/697 (47%), Gaps = 72/697 (10%)

Query: 136 NLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSL 195
           +LR +  +DL+G  L G+L+                   IC+L  L +LN+S N + G +
Sbjct: 65  HLRTVTSVDLNGMNLSGTLS-----------------PLICKLHGLRKLNVSTNFISGPI 107

Query: 196 PQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRL 255
           PQ LS    L VLDL +N+  G +PI +   +T L+ L L  N   GS    +  N S L
Sbjct: 108 PQDLSLCRSLEVLDLCTNRFHGVIPIQLTMIIT-LKKLYLCENYLFGSIPRQI-GNLSSL 165

Query: 256 EVLQISRLQIETENFPWLPRF-QLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAG 314
           + L I    +     P + +  QL+++   R   SG IPS +     L+ + L+ N L G
Sbjct: 166 QELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEG 225

Query: 315 TFPTWL--LQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHL---VISNNNFIGMLPDNFG 369
           + P  L  LQN T L    L+ N L G   +P S  ++  L    +  N F G +P   G
Sbjct: 226 SLPKQLEKLQNLTDL---ILWQNRLSG--EIPPSVGNISRLEVLALHENYFTGSIPREIG 280

Query: 370 MILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNV 429
             L ++  L +  N   G IP  +G  +    +D S N  +G +PK+F    ++L  +++
Sbjct: 281 K-LTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEF-GHILNLKLLHL 338

Query: 430 SHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHW 489
             N   G I  +   +T L  L L+ N+  G + + L   P L  L + +N L G++P  
Sbjct: 339 FENILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPL 398

Query: 490 VGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFL 549
           +G +SN  VL MS NSL G +       Q   +L +  NKL G +        SL  L L
Sbjct: 399 IGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLML 458

Query: 550 HNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQ 609
            +N L GS+P  LF    L  L+L  N  SGNI   + +  NL  L L  NN  G IP +
Sbjct: 459 GDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPE 518

Query: 610 LCHLRKIAIVDISYNLLDGSIP----SCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAIS 665
           + +L KI   +IS N L G IP    SC T I      G+ F+G++              
Sbjct: 519 IGNLTKIVGFNISSNQLTGHIPKELGSCVT-IQRLDLSGNKFSGYI-------------- 563

Query: 666 AYYNSTLNLIFSGEDNRELRQRV--EVKFMAKNRYES---YKGGVLEYMTGLDLSSNELT 720
                           +EL Q V  E+  ++ NR      +  G L  +  L L  N L+
Sbjct: 564 ---------------AQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLS 608

Query: 721 GEIPSAIGYLQELH-ALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELN 779
             IP  +G L  L  +LN+SHN+LSG+IP S  NL+M+E + L+ NKL G+IP  +  L 
Sbjct: 609 ENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLM 668

Query: 780 YLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLC 816
            L I N+S N+L G  P+T  F   D SN+ GN  LC
Sbjct: 669 SLLICNISNNNLVGTVPDTAVFQRMDSSNFAGNHGLC 705

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  249 bits (635), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 242/832 (29%), Positives = 369/832 (44%), Gaps = 116/832 (13%)

Query: 38  IKTFIKSVSDMQFADAILVSWVDNRTSDCCSWERIKCNVTTANYNNN------------- 84
           +K+F   +S+      +L  W    +   C+W  I C+ T    + +             
Sbjct: 34  LKSFKNGISNDPLG--VLSDWTIIGSLRHCNWTGITCDSTGHVVSVSLLEKQLEGVLSPA 91

Query: 85  -GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVL 143
             +L  L++L++  NSF+  +   +  LT L  L L  N    G  P  +   L+N+  L
Sbjct: 92  IANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFS-GSIPSGIW-ELKNIFYL 149

Query: 144 DLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLT 203
           DL  N L G                 ++   IC+  +LV +   +N L G +P+CL +L 
Sbjct: 150 DLRNNLLSG-----------------DVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLV 192

Query: 204 YLRVLDLTSNQLSGNLPISV--FANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQIS 261
           +L++     N L+G++P+S+   ANLT L+   LSGN   G                +I 
Sbjct: 193 HLQMFVAAGNHLTGSIPVSIGTLANLTDLD---LSGNQLTG----------------KIP 233

Query: 262 RLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLL 321
           R      +F  L    L+ L L    + G IP+ +     L  ++L  N L G  P  L 
Sbjct: 234 R------DFGNL--LNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAEL- 284

Query: 322 QNNTKLEFLFLFNNFLKGLLHLPDSK---RDLLHLVISNNNFIGMLPDNFGMILPELVYL 378
            N  +L+ L ++ N L     +P S      L HL +S N+ +G + +  G  L  L  L
Sbjct: 285 GNLVQLQALRIYKNKLTS--SIPSSLFRLTQLTHLGLSENHLVGPISEEIGF-LESLEVL 341

Query: 379 DMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQF---------------LTG--- 420
            +  N+F G  P S+     L  L +  NN SGELP                  LTG   
Sbjct: 342 TLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIP 401

Query: 421 -----CVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHIL 475
                C  L  +++SHN   G+I P+      L ++ +  N FTG + + + N  +L  L
Sbjct: 402 SSISNCTGLKLLDLSHNQMTGEI-PRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETL 460

Query: 476 DVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLE 535
            V++N L+G L   +G    L +L +S NSL G +   + NL+   IL +  N   G + 
Sbjct: 461 SVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIP 520

Query: 536 FSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRAL 595
              ++ + L  L +++N L G IP  +F    L  LDL +N+FSG IP L ++  +L  L
Sbjct: 521 REMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYL 580

Query: 596 LLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYT 655
            L+GN   G+IP  L  L  +   DIS NLL G+IP         M+    F+  +   T
Sbjct: 581 SLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGT 640

Query: 656 LVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLS 715
           +  E             N +FSG   R L+         KN +             LD S
Sbjct: 641 IPKELGKLEMVQEIDLSNNLFSGSIPRSLQA-------CKNVFT------------LDFS 681

Query: 716 SNELTGEIPSAI-GYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLE 774
            N L+G IP  +   +  + +LNLS N  SG IP+SF N+  + S+DLS N L G+IP  
Sbjct: 682 QNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPES 741

Query: 775 LSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPAV-LKNCS 825
           L+ L+ L    ++ N+L G  P +  F N + S+  GN +LCG    LK C+
Sbjct: 742 LANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKKPLKPCT 793

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  247 bits (631), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 236/741 (31%), Positives = 362/741 (48%), Gaps = 45/741 (6%)

Query: 108 LTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSG---NGLIGSLTMQGEKLELL 164
           L SL +L SL L  N L  G  P +   NL NL++L L+     GLI S   +  +L+ L
Sbjct: 140 LGSLVNLKSLKLGDNELN-GTIP-ETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQTL 197

Query: 165 NNKCREMNARI-CELKNLVELNL---SWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLP 220
             +  E+   I  E+ N   L L   ++N+L+GSLP  L+ L  L+ L+L  N  SG +P
Sbjct: 198 ILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIP 257

Query: 221 ISVFANLTSLEYLSLSGNNFQGSF--SLSVLANHSRLEVLQISRLQIETENFPWLPRFQL 278
            S   +L S++YL+L GN  QG     L+ LAN   L++   +   +  E F W    QL
Sbjct: 258 -SQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEF-WRMN-QL 314

Query: 279 KVLNLRRCNISGTIP-SFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFL 337
           + L L +  +SG++P +       L+ + LS   L+G  P  +  N   L+ L L NN L
Sbjct: 315 EFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEI-SNCQSLKLLDLSNNTL 373

Query: 338 KGLLHLPDSKRDLLHLV---ISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMG 394
            G   +PDS   L+ L    ++NN+  G L  +    L  L    +  N+ EG +P  +G
Sbjct: 374 TG--QIPDSLFQLVELTNLYLNNNSLEGTLSSSISN-LTNLQEFTLYHNNLEGKVPKEIG 430

Query: 395 YTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLN 454
           +  +L  + L  N FSGE+P + +  C  L  ++   N   G+I      +  L  L+L 
Sbjct: 431 FLGKLEIMYLYENRFSGEMPVE-IGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLR 489

Query: 455 DNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPL 514
           +N+  G +   L N   + ++D+++N LSG +P   G  + L++ ++  NSL+G++   L
Sbjct: 490 ENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSL 549

Query: 515 SNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLR 574
            NL+    ++ S NK  G +      SSS     +  N   G IP  L +S+ L  L L 
Sbjct: 550 INLKNLTRINFSSNKFNGSIS-PLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLG 608

Query: 575 DNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCF 634
            N+F+G IP    + S L  L +  N+L G IP +L   +K+  +D++ N L G IP+  
Sbjct: 609 KNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPT-- 666

Query: 635 TNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGED-NRELRQRVE--VK 691
                W+ +              V   P       + L L   G   N  + Q +     
Sbjct: 667 -----WLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQA 721

Query: 692 FMAKNRYESYKGGVLEYMTG-------LDLSSNELTGEIPSAIGYLQELH-ALNLSHNHL 743
             A N  E+   G L    G       L LS N LTGEIP  IG LQ+L  AL+LS+N+ 
Sbjct: 722 LNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNF 781

Query: 744 SGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFAN 803
           +G IP + S L  +ES+DLS+N+L G++P ++ ++  L   N+SYN+L G     KQF+ 
Sbjct: 782 TGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL--KKQFSR 839

Query: 804 FDESNYRGNLNLCGPAVLKNC 824
           +    + GN  LCG + L +C
Sbjct: 840 WQADAFVGNAGLCG-SPLSHC 859

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  237 bits (604), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 236/790 (29%), Positives = 369/790 (46%), Gaps = 83/790 (10%)

Query: 53  AILVSWVDNRTSDCCSWERIKCN---VTTANYNNNGSLKQLKILNIGFNSFSESLVPLLT 109
            +L +W+   ++D CS+  + C    V++ + +N         L++ F+  +  L+PL  
Sbjct: 59  TLLQNWLS--STDPCSFTGVSCKNSRVSSIDLSNT-------FLSVDFSLVTSYLLPL-- 107

Query: 110 SLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCR 169
             ++L SL L+  NL               L+ +DL+ N + G ++              
Sbjct: 108 --SNLESLVLKNANLSGSLTSAAKSQCGVTLDSIDLAENTISGPIS-------------- 151

Query: 170 EMNA-RICELKNLVELNLSWNKLDGSLPQCLSNLTY-LRVLDLTSNQLSG-NL-PISVFA 225
           ++++  +C   NL  LNLS N LD    + L   T+ L+VLDL+ N +SG NL P     
Sbjct: 152 DISSFGVCS--NLKSLNLSKNFLDPPGKEMLKGATFSLQVLDLSYNNISGFNLFPWVSSM 209

Query: 226 NLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRR 285
               LE+ S+ GN   GS                           P L    L  L+L  
Sbjct: 210 GFVELEFFSIKGNKLAGSI--------------------------PELDFKNLSYLDLSA 243

Query: 286 CNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLL-HLP 344
            N S   PSF     +L+++DLS N   G   + L  +  KL FL L NN   GL+  LP
Sbjct: 244 NNFSTVFPSFKDCS-NLQHLDLSSNKFYGDIGSSL-SSCGKLSFLNLTNNQFVGLVPKLP 301

Query: 345 DSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDL 404
                L +L +  N+F G+ P+    +   +V LD+S N+F G +P S+G    L  +D+
Sbjct: 302 --SESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECSSLELVDI 359

Query: 405 SSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEE 464
           S+NNFSG+LP   L    ++  M +S N F G +   + ++ +L  L ++ N  TG +  
Sbjct: 360 SNNNFSGKLPVDTLLKLSNIKTMVLSFNKFVGGLPDSFSNLPKLETLDMSSNNLTGIIPS 419

Query: 465 GLLNAP--SLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARI 522
           G+   P  +L +L + NN+  G +P  + N S L  L +S N L G +   L +L   + 
Sbjct: 420 GICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKD 479

Query: 523 LDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNI 582
           L +  N+L G +     +  +L +L L  N L G IP++L   ++L  + L +N+ SG I
Sbjct: 480 LILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEI 539

Query: 583 PPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWME 642
           P  +   SNL  L L  N++ GNIP +L + + +  +D++ N L+GSIP        + +
Sbjct: 540 PASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPL-----FKQ 594

Query: 643 EGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYK 702
            G+     + G   V       S   +   NL+  G   +E   R+  +    N    Y+
Sbjct: 595 SGNIAVALLTGKRYVYIKNDG-SKECHGAGNLLEFGGIRQEQLDRISTRHPC-NFTRVYR 652

Query: 703 GGVLEY------MTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKM 756
           G           M  LDLS N+L G IP  +G +  L  LNL HN LSG IP+    LK 
Sbjct: 653 GITQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKN 712

Query: 757 IESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLC 816
           +  +DLSYN+  G IP  L+ L  L   ++S N+LSG  P +  F  F +  +  N +LC
Sbjct: 713 VAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDTFPDYRFANN-SLC 771

Query: 817 GPAVLKNCST 826
           G  +   CS+
Sbjct: 772 GYPLPLPCSS 781

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  236 bits (601), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 226/713 (31%), Positives = 335/713 (46%), Gaps = 61/713 (8%)

Query: 137 LRNLEVLDLSGNGLIGSLTMQ-----GEKLELLNNKCREMNARICELK------NLVELN 185
           L NLE L L    L GSLT       G  L+ ++     ++  I ++       NL  LN
Sbjct: 107 LSNLESLVLKNANLSGSLTSAAKSQCGVTLDSIDLAENTISGPISDISSFGVCSNLKSLN 166

Query: 186 LSWNKLDGSLPQCLSNLTY-LRVLDLTSNQLSG-NL-PISVFANLTSLEYLSLSGNNFQG 242
           LS N LD    + L   T+ L+VLDL+ N +SG NL P         LE+ SL GN   G
Sbjct: 167 LSKNFLDPPGKEMLKAATFSLQVLDLSYNNISGFNLFPWVSSMGFVELEFFSLKGNKLAG 226

Query: 243 SFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDL 302
           S                           P L    L  L+L   N S   PSF     +L
Sbjct: 227 SI--------------------------PELDFKNLSYLDLSANNFSTVFPSFKDCS-NL 259

Query: 303 RYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLL-HLPDSKRDLLHLVISNNNFI 361
           +++DLS N   G   + L  +  KL FL L NN   GL+  LP     L +L +  N+F 
Sbjct: 260 QHLDLSSNKFYGDIGSSL-SSCGKLSFLNLTNNQFVGLVPKLP--SESLQYLYLRGNDFQ 316

Query: 362 GMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGC 421
           G+ P+    +   +V LD+S N+F G +P S+G    L  +D+S NNFSG+LP   L+  
Sbjct: 317 GVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECSSLELVDISYNNFSGKLPVDTLSKL 376

Query: 422 VSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAP--SLHILDVSN 479
            ++  M +S N F G +   + ++ +L  L ++ N  TG +  G+   P  +L +L + N
Sbjct: 377 SNIKTMVLSFNKFVGGLPDSFSNLLKLETLDMSSNNLTGVIPSGICKDPMNNLKVLYLQN 436

Query: 480 NMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFN 539
           N+  G +P  + N S L  L +S N L G +   L +L   + L +  N+L G +     
Sbjct: 437 NLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELM 496

Query: 540 HSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRG 599
           +  +L +L L  N L G IP++L   ++L  + L +N+ SG IP  +   SNL  L L  
Sbjct: 497 YLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGN 556

Query: 600 NNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVE 659
           N++ GNIP +L + + +  +D++ N L+GSIP        + + G+     + G   V  
Sbjct: 557 NSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPL-----FKQSGNIAVALLTGKRYVYI 611

Query: 660 HFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEY------MTGLD 713
                S   +   NL+  G   +E   R+  +    N    Y+G           M  LD
Sbjct: 612 KNDG-SKECHGAGNLLEFGGIRQEQLDRISTRHPC-NFTRVYRGITQPTFNHNGSMIFLD 669

Query: 714 LSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPL 773
           LS N+L G IP  +G +  L  LNL HN LSG IP+    LK +  +DLSYN+  G IP 
Sbjct: 670 LSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPN 729

Query: 774 ELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPAVLKNCST 826
            L+ L  L   ++S N+LSG  P +  F  F +  +  N +LCG  +   CS+
Sbjct: 730 SLTSLTLLGEIDLSNNNLSGMIPESAPFDTFPDYRFANN-SLCGYPLPIPCSS 781

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  227 bits (579), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 211/652 (32%), Positives = 315/652 (48%), Gaps = 24/652 (3%)

Query: 180 NLVELNLSWNKLDGSLPQ--CLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSG 237
           +L  L+LS N L G +     L + + L+ L+++SN L     +S    L SLE L LS 
Sbjct: 123 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 182

Query: 238 NNFQGSFSLS-VLANH-SRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSF 295
           N+  G+  +  VL++    L+ L IS  +I + +        L+ L++   N S  IP F
Sbjct: 183 NSISGANVVGWVLSDGCGELKHLAISGNKI-SGDVDVSRCVNLEFLDVSSNNFSTGIP-F 240

Query: 296 LQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVI 355
           L     L+++D+S N L+G F +  +   T+L+ L + +N   G +  P   + L +L +
Sbjct: 241 LGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIP-PLPLKSLQYLSL 298

Query: 356 SNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPK 415
           + N F G +PD        L  LD+S N F G++PP  G    L  L LSSNNFSGELP 
Sbjct: 299 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 358

Query: 416 QFLTGCVSLAFMNVSHNYFGGQIFPKYMSMT-QLAWLYLNDNQFTGRLEEGLLNAP--SL 472
             L     L  +++S N F G++     +++  L  L L+ N F+G +   L   P  +L
Sbjct: 359 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 418

Query: 473 HILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYG 532
             L + NN  +G++P  + N S L  L +S N L G +   L +L   R L +  N L G
Sbjct: 419 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 478

Query: 533 PLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNL 592
            +     +  +L  L L  N L G IPS L   + L  + L +N  +G IP  I    NL
Sbjct: 479 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 538

Query: 593 RALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVF 652
             L L  N+  GNIP +L   R +  +D++ NL +G+IP+       + + G     F+ 
Sbjct: 539 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM-----FKQSGKIAANFIA 593

Query: 653 GYTLVVEHFPAISAYYNSTLNLI-FSGEDNRELRQRVEVKFMAKNRYESYKGGVLEY--- 708
           G   V      +    +   NL+ F G  + +L  R+  +         Y G        
Sbjct: 594 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL-NRLSTRNPCNITSRVYGGHTSPTFDN 652

Query: 709 ---MTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765
              M  LD+S N L+G IP  IG +  L  LNL HN +SGSIP    +L+ +  +DLS N
Sbjct: 653 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 712

Query: 766 KLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCG 817
           KL G+IP  +S L  L   ++S N+LSGP P   QF  F  + +  N  LCG
Sbjct: 713 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 764

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  224 bits (572), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 211/702 (30%), Positives = 328/702 (46%), Gaps = 89/702 (12%)

Query: 142 VLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSN 201
           + DLSGN ++ +L +    L        ++ + I ELK+LV L+LS N   G LP  L N
Sbjct: 70  ICDLSGN-VVETLNLSASGLS------GQLGSEIGELKSLVTLDLSLNSFSGLLPSTLGN 122

Query: 202 LTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQIS 261
            T L  LDL++N  SG +P  +F +L +L +L L  NN  G    SV             
Sbjct: 123 CTSLEYLDLSNNDFSGEVP-DIFGSLQNLTFLYLDRNNLSGLIPASVGG----------- 170

Query: 262 RLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPT--W 319
                          +L  L +   N+SGTIP  L     L Y+ L++N L G+ P   +
Sbjct: 171 -------------LIELVDLRMSYNNLSGTIPELLGNCSKLEYLALNNNKLNGSLPASLY 217

Query: 320 LLQNNTKLEFLFLFNNFLKGLLHLPDSK-RDLLHLVISNNNFIGMLPDNFGMILPELVYL 378
           LL+N   L  LF+ NN L G LH   S  + L+ L +S N+F G +P   G     L  L
Sbjct: 218 LLEN---LGELFVSNNSLGGRLHFGSSNCKKLVSLDLSFNDFQGGVPPEIGNC-SSLHSL 273

Query: 379 DMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQI 438
            M + +  G+IP SMG   ++  +DLS N  SG +P++ L  C SL  + ++ N   G+I
Sbjct: 274 VMVKCNLTGTIPSSMGMLRKVSVIDLSDNRLSGNIPQE-LGNCSSLETLKLNDNQLQGEI 332

Query: 439 FPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDV 498
            P    + +L  L L  N+ +G +  G+    SL  + V NN L+G+LP  V    +L  
Sbjct: 333 PPALSKLKKLQSLELFFNKLSGEIPIGIWKIQSLTQMLVYNNTLTGELPVEVTQLKHLKK 392

Query: 499 LLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSI 558
           L +  N   GD+ + L   +    +D+  N+  G +     H   L    L +N L+G I
Sbjct: 393 LTLFNNGFYGDIPMSLGLNRSLEEVDLLGNRFTGEIPPHLCHGQKLRLFILGSNQLHGKI 452

Query: 559 PSALFQSSQLMTLDLRDNE-----------------------FSGNIPPLINEDSNLRAL 595
           P+++ Q   L  + L DN+                       F G+IP  +    NL  +
Sbjct: 453 PASIRQCKTLERVRLEDNKLSGVLPEFPESLSLSYVNLGSNSFEGSIPRSLGSCKNLLTI 512

Query: 596 LLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYT 655
            L  N L G IP +L +L+ + ++++S+N L+G +PS  +     +        F  G  
Sbjct: 513 DLSQNKLTGLIPPELGNLQSLGLLNLSHNYLEGPLPSQLSGCARLLY-------FDVGSN 565

Query: 656 LVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLS 715
            +    P+    + S   L+ S  DN  L    +  F+A+          L+ ++ L ++
Sbjct: 566 SLNGSIPSSFRSWKSLSTLVLS--DNNFLGAIPQ--FLAE----------LDRLSDLRIA 611

Query: 716 SNELTGEIPSAIGYLQEL-HALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLE 774
            N   G+IPS++G L+ L + L+LS N  +G IP +   L  +E +++S NKL G + + 
Sbjct: 612 RNAFGGKIPSSVGLLKSLRYGLDLSANVFTGEIPTTLGALINLERLNISNNKLTGPLSV- 670

Query: 775 LSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLC 816
           L  L  L   +VSYN  +GP P     +N   S + GN +LC
Sbjct: 671 LQSLKSLNQVDVSYNQFTGPIP-VNLLSN--SSKFSGNPDLC 709

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  218 bits (554), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 228/719 (31%), Positives = 326/719 (45%), Gaps = 123/719 (17%)

Query: 170 EMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTS 229
            ++ RI  L+ L +L+L  N  +G++P  L+  T L  + L  N LSG LP     NLTS
Sbjct: 83  RISDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLP-PAMRNLTS 141

Query: 230 LEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNIS 289
           LE  +++GN   G   + + ++                          L+ L++     S
Sbjct: 142 LEVFNVAGNRLSGEIPVGLPSS--------------------------LQFLDISSNTFS 175

Query: 290 GTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRD 349
           G IPS L     L+ ++LS+N L G  P  L  N   L++L+L  N L+G   LP +   
Sbjct: 176 GQIPSGLANLTQLQLLNLSYNQLTGEIPASL-GNLQSLQYLWLDFNLLQG--TLPSA--- 229

Query: 350 LLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNF 409
                ISN +               LV+L  S+N   G IP + G   +L  L LS+NNF
Sbjct: 230 -----ISNCS--------------SLVHLSASENEIGGVIPAAYGALPKLEVLSLSNNNF 270

Query: 410 SGELPKQFLTGC-VSLAFMNVSHNYFGGQIFPKYMS--MTQLAWLYLNDNQFTGRLEEGL 466
           SG +P  F   C  SL  + +  N F   + P+  +   T L  L L +N+ +GR    L
Sbjct: 271 SGTVP--FSLFCNTSLTIVQLGFNAFSDIVRPETTANCRTGLQVLDLQENRISGRFPLWL 328

Query: 467 LNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDIS 526
            N  SL  LDVS N+ SG++P  +GN   L+ L ++ NSL G++ V +       +LD  
Sbjct: 329 TNILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNSLTGEIPVEIKQCGSLDVLDFE 388

Query: 527 ENKLYGPL-EF-----------------------SFNHSSSLWHLFLHNNSLNGSIPSAL 562
            N L G + EF                       S  +   L  L L  N+LNGS P  L
Sbjct: 389 GNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNGSFPVEL 448

Query: 563 FQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDIS 622
              + L  LDL  N FSG +P  I+  SNL  L L GN   G IP  + +L K+  +D+S
Sbjct: 449 MALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLS 508

Query: 623 YNLLDGSIP---SCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISA--YYNSTLNLIFS 677
              + G +P   S   N+     +G+ F+G      +V E F ++ +  Y N + N  FS
Sbjct: 509 KQNMSGEVPVELSGLPNVQVIALQGNNFSG------VVPEGFSSLVSLRYVNLSSN-SFS 561

Query: 678 GE-----------------DNR-------ELR--QRVEVKFMAKNRYESYKGGVLEYMTG 711
           GE                 DN        E+     +EV  +  NR   +    L  +  
Sbjct: 562 GEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPR 621

Query: 712 ---LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLR 768
              LDL  N L+GEIP  I     L++L+L HNHLSG IP SFS L  +  MDLS N L 
Sbjct: 622 LKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLT 681

Query: 769 GQIPLELSELNY-LAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPAVLKNCST 826
           G+IP  L+ ++  L  FNVS N+L G  P +      + S + GN  LCG  + + C +
Sbjct: 682 GEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRINNTSEFSGNTELCGKPLNRRCES 740

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	883
358345693	1011	Receptor-like protein kinase [Medicago t	0.947	0.827	0.414	0.0
357468861	1016	Receptor-like protein kinase [Medicago t	0.947	0.823	0.414	0.0
297842171	966	leucine-rich repeat family protein [Arab	0.972	0.889	0.406	0.0
15221162	965	receptor like protein 15 [Arabidopsis th	0.969	0.887	0.400	0.0
12324907	910	putative disease resistance protein; 468	0.942	0.914	0.409	1e-180
358345471	933	Receptor kinase [Medicago truncatula] gi	0.959	0.907	0.428	1e-178
186495296	1000	receptor like protein 13 [Arabidopsis th	0.902	0.797	0.437	1e-174
12323814	1068	disease resistance protein, putative; 11	0.902	0.746	0.437	1e-174
12323813	951	disease resistance protein, putative; 63	0.963	0.894	0.414	1e-170
12321378	1784	hypothetical protein [Arabidopsis thalia	0.950	0.470	0.428	1e-169

>gi|358345693|ref|XP_003636910.1| Receptor-like protein kinase [Medicago truncatula] gi|355502845|gb|AES84048.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/982 (41%), Positives = 568/982 (57%), Gaps = 145/982 (14%)

Query: 13  WVAIAFVQMHGLKSCLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCSWERI 72
           +V +  +   G   CL+ ERI LLEIK +  S +   +    L SWVD+R S+CCSW  +
Sbjct: 13  FVTLMLMLTQGCNGCLEKERISLLEIKHYFLSQTGDPYNK--LGSWVDDRDSNCCSWNNV 70

Query: 73  KC-NVTTA----------------NYNNNGSL----KQLKILNIGFNSF----------- 100
           KC N+++                 +   N SL    K+L++L++ +NSF           
Sbjct: 71  KCSNISSGHIIELSIRKLLFDIPFDMKLNVSLFRPFKELRLLDLSYNSFLGWIGNEGFPR 130

Query: 101 --------------SESLVPLLTSLTSLTSLF------------------------LEGN 122
                         + S++P L  LT+LT+L                         L GN
Sbjct: 131 LKRLETLDLSGNYLNSSILPSLKGLTALTTLKLVSNSMENFSAQGFSRSKELEVLDLSGN 190

Query: 123 NLGV-------GFKPMKVL----------------PNLRNLEVLDLSGNGLIGSLTMQG- 158
            L         GF  ++ L                     LE+LDL GN   GSL ++  
Sbjct: 191 RLNCNIITSLHGFTSLRSLILSYNNFNCSLSTLDFAKFSRLELLDLGGNQFTGSLHVEDV 250

Query: 159 ---EKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQL 215
              + L++L+    +MN  +C  K+LVEL++S N     LP CLSNLT LRVL+L++N  
Sbjct: 251 QHLKNLKMLSLNDNQMNG-LCNFKDLVELDISKNMFSAKLPDCLSNLTNLRVLELSNNLF 309

Query: 216 SGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISR-----LQIETENF 270
           SGN P S  +NLTSL YLS  GN  QGSFSLS LANHS LEVL IS      + IETE  
Sbjct: 310 SGNFP-SFISNLTSLAYLSFYGNYMQGSFSLSTLANHSNLEVLYISSKNNIGVDIETEKT 368

Query: 271 PWLPRFQLKVLNLRRCNIS----GTIPSFLQYQYDLRYIDLSHNNLAGTFPT-WLLQNNT 325
            W P+FQLK L +R CN++      IP+FL YQY+L Y+ LS NN+ G+ P+ WL+ N+ 
Sbjct: 369 KWFPKFQLKSLIVRNCNLNKDEGSVIPTFLSYQYNLVYLVLSSNNINGSLPSNWLIHND- 427

Query: 326 KLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSF 385
                                  D+++L ISNNN  G+LP + G+ LP + YL+ S NSF
Sbjct: 428 -----------------------DMIYLDISNNNLSGLLPKDIGIFLPNVTYLNFSWNSF 464

Query: 386 EGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSM 445
           EG+IP S+G   +L  LD S N+FSGELPKQ  TGC +L ++ +S+N+  G I P++ + 
Sbjct: 465 EGNIPSSIGKMKQLQLLDFSQNHFSGELPKQLATGCDNLQYLKLSNNFLHGNI-PRFCNS 523

Query: 446 TQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNS 505
             +  L+LN+N F+G LE+ L N   L  L +SNN  SG +P  +G FSN+  LLMS+N 
Sbjct: 524 VNMFGLFLNNNNFSGTLEDVLGNNTRLETLSISNNSFSGTIPSSIGMFSNMWALLMSKNQ 583

Query: 506 LEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS 565
           LEG++ + +S++   +ILD+S+NKL G +    +  + L  L+L  N L+GSIP  L++ 
Sbjct: 584 LEGEIPIEISSIWRLQILDLSQNKLNGSIP-PLSGLTLLRFLYLQENGLSGSIPYELYEG 642

Query: 566 SQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNL 625
            QL  LDLR+N+FSG IP  +++ S LR LLL GNN +G IP QLC L+KI I+D+S N+
Sbjct: 643 FQLQLLDLRENKFSGKIPNWMDKFSELRVLLLGGNNFEGEIPMQLCRLKKINIMDLSRNM 702

Query: 626 LDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVV--EHFPAISAYYNSTLNLIFSGEDNRE 683
           L+ SIPSCF N+   M +   +   VF  + ++  +H      +++S+L++    E ++ 
Sbjct: 703 LNASIPSCFRNMLFGMRQ---YVDAVFDLSSILYGQHIQDTHYFFDSSLSIDLPLEKDQL 759

Query: 684 LRQ--RVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHN 741
           +     +EV+F  K+    YKG VLE MTGLDLS N+LTG IPS IG LQ++ ALNLSHN
Sbjct: 760 IEDLLHLEVEFRTKHYEYFYKGKVLENMTGLDLSCNKLTGVIPSQIGDLQQIRALNLSHN 819

Query: 742 HLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQF 801
           HLSG IP +FSNL  IES+DLSYN L G+IP EL++LN+L+ FNVSYN+LSG  P+  QF
Sbjct: 820 HLSGPIPITFSNLTQIESLDLSYNDLSGKIPNELTQLNFLSTFNVSYNNLSGTPPSIGQF 879

Query: 802 ANFDESNYRGNLNLCGPAVLKNCSTDLPPPPPMT-PAEEDESAIDMVAFNWSFAVSYVTV 860
           ANFDE NYRGN +LCGP + + C    PPP   +   EE+E+ +DM+ F WSF  SY+T+
Sbjct: 880 ANFDEDNYRGNPSLCGPLLSRKCERVEPPPSSQSNDNEEEETGVDMITFYWSFTASYITI 939

Query: 861 IVGLLALLFLNSYWHRQWFFLI 882
           ++  + +L +N  W   WF+ I
Sbjct: 940 LLAFITVLCINPRWRMAWFYYI 961

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468861|ref|XP_003604715.1| Receptor-like protein kinase [Medicago truncatula] gi|355505770|gb|AES86912.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/982 (41%), Positives = 568/982 (57%), Gaps = 145/982 (14%)

Query: 13  WVAIAFVQMHGLKSCLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCSWERI 72
           +V +  +   G   CL+ ERI LLEIK +  S +   +    L SWVD+R S+CCSW  +
Sbjct: 13  FVTLMLMLTQGCNGCLEKERISLLEIKHYFLSQTGDPYNK--LGSWVDDRDSNCCSWNNV 70

Query: 73  KC-NVTTA----------------NYNNNGSL----KQLKILNIGFNSF----------- 100
           KC N+++                 +   N SL    K+L++L++ +NSF           
Sbjct: 71  KCSNISSGHIIELSIRKLLFDIPFDMKLNVSLFRPFKELRLLDLSYNSFLGWIGNEGFPR 130

Query: 101 --------------SESLVPLLTSLTSLTSLF------------------------LEGN 122
                         + S++P L  LT+LT+L                         L GN
Sbjct: 131 LKRLETLDLSGNYLNSSILPSLKGLTALTTLKLVSNSMENFSAQGFSRSKELEVLDLSGN 190

Query: 123 NLGV-------GFKPMKVL----------------PNLRNLEVLDLSGNGLIGSLTMQG- 158
            L         GF  ++ L                     LE+LDL GN   GSL ++  
Sbjct: 191 RLNCNIITSLHGFTSLRSLILSYNNFNCSLSTLDFAKFSRLELLDLGGNQFTGSLHVEDV 250

Query: 159 ---EKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQL 215
              + L++L+    +MN  +C  K+LVEL++S N     LP CLSNLT LRVL+L++N  
Sbjct: 251 QHLKNLKMLSLNDNQMNG-LCNFKDLVELDISKNMFSAKLPDCLSNLTNLRVLELSNNLF 309

Query: 216 SGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISR-----LQIETENF 270
           SGN P S  +NLTSL YLS  GN  QGSFSLS LANHS LEVL IS      + IETE  
Sbjct: 310 SGNFP-SFISNLTSLAYLSFYGNYMQGSFSLSTLANHSNLEVLYISSKNNIGVDIETEKT 368

Query: 271 PWLPRFQLKVLNLRRCNIS----GTIPSFLQYQYDLRYIDLSHNNLAGTFPT-WLLQNNT 325
            W P+FQLK L +R CN++      IP+FL YQY+L Y+ LS NN+ G+ P+ WL+ N+ 
Sbjct: 369 KWFPKFQLKSLIVRNCNLNKDEGSVIPTFLSYQYNLVYLVLSSNNINGSLPSNWLIHND- 427

Query: 326 KLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSF 385
                                  D+++L ISNNN  G+LP + G+ LP + YL+ S NSF
Sbjct: 428 -----------------------DMIYLDISNNNLSGLLPKDIGIFLPNVTYLNFSWNSF 464

Query: 386 EGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSM 445
           EG+IP S+G   +L  LD S N+FSGELPKQ  TGC +L ++ +S+N+  G I P++ + 
Sbjct: 465 EGNIPSSIGKMKQLQLLDFSQNHFSGELPKQLATGCDNLQYLKLSNNFLHGNI-PRFCNS 523

Query: 446 TQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNS 505
             +  L+LN+N F+G LE+ L N   L  L +SNN  SG +P  +G FSN+  LLMS+N 
Sbjct: 524 VNMFGLFLNNNNFSGTLEDVLGNNTRLETLSISNNSFSGTIPSSIGMFSNMWALLMSKNQ 583

Query: 506 LEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS 565
           LEG++ + +S++   +ILD+S+NKL G +    +  + L  L+L  N L+GSIP  L++ 
Sbjct: 584 LEGEIPIEISSIWRLQILDLSQNKLNGSIP-PLSGLTLLRFLYLQENGLSGSIPYELYEG 642

Query: 566 SQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNL 625
            QL  LDLR+N+FSG IP  +++ S LR LLL GNN +G IP QLC L+KI I+D+S N+
Sbjct: 643 FQLQLLDLRENKFSGKIPNWMDKFSELRVLLLGGNNFEGEIPMQLCRLKKINIMDLSRNM 702

Query: 626 LDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVV--EHFPAISAYYNSTLNLIFSGEDNRE 683
           L+ SIPSCF N+   M +   +   VF  + ++  +H      +++S+L++    E ++ 
Sbjct: 703 LNASIPSCFRNMLFGMRQ---YVDAVFDLSSILYGQHIQDTHYFFDSSLSIDLPLEKDQL 759

Query: 684 LRQ--RVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHN 741
           +     +EV+F  K+    YKG VLE MTGLDLS N+LTG IPS IG LQ++ ALNLSHN
Sbjct: 760 IEDLLHLEVEFRTKHYEYFYKGKVLENMTGLDLSCNKLTGVIPSQIGDLQQIRALNLSHN 819

Query: 742 HLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQF 801
           HLSG IP +FSNL  IES+DLSYN L G+IP EL++LN+L+ FNVSYN+LSG  P+  QF
Sbjct: 820 HLSGPIPITFSNLTQIESLDLSYNDLSGKIPNELTQLNFLSTFNVSYNNLSGTPPSIGQF 879

Query: 802 ANFDESNYRGNLNLCGPAVLKNCSTDLPPPPPMT-PAEEDESAIDMVAFNWSFAVSYVTV 860
           ANFDE NYRGN +LCGP + + C    PPP   +   EE+E+ +DM+ F WSF  SY+T+
Sbjct: 880 ANFDEDNYRGNPSLCGPLLSRKCERVEPPPSSQSNDNEEEETGVDMITFYWSFTASYITI 939

Query: 861 IVGLLALLFLNSYWHRQWFFLI 882
           ++  + +L +N  W   WF+ I
Sbjct: 940 LLAFITVLCINPRWRMAWFYYI 961

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842171|ref|XP_002888967.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297334808|gb|EFH65226.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/959 (40%), Positives = 563/959 (58%), Gaps = 100/959 (10%)

Query: 12  LWVAIAFVQMHGLKSCLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCSWER 71
           +WV +   Q+HG KSC+D ER  L E++ ++ S ++   +D++L +W ++ TSDCC W+ 
Sbjct: 12  IWVMLLMGQLHGYKSCIDKERNALFELRKYMISRTEEDQSDSVLPTWTNDTTSDCCRWKG 71

Query: 72  IKCNVTTAN-----------------------------------------------YNNN 84
           + CN  +                                                 Y + 
Sbjct: 72  VACNRVSGRVTEIAFGGLSLKDNSLLNLSLLHPFEDVRSLNLSSSRFSGLFDDVEGYKSL 131

Query: 85  GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLD 144
             L++L+IL++  N F+ S+   L++ TSLT+LFL  NN+ VG  P K L +L NLE+LD
Sbjct: 132 RRLRKLEILDLSSNKFNNSIFHFLSAATSLTTLFLRSNNM-VGSFPAKELRDLTNLELLD 190

Query: 145 LSGNGLIGSLTMQG----EKLELLNNKCREMNAR------------------ICELKNLV 182
           LS N   GS+ +Q      KL+ L+    E +                    ICELKN  
Sbjct: 191 LSRNRFNGSIPIQELSSLRKLKALDLSGNEFSGSMELQGKFSTNLQEWCIHGICELKNTQ 250

Query: 183 ELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQG 242
           EL+LS N+L G  P CL++LT LRVLDL+SNQL+G +P S   +L SLEYLSL  N+F+G
Sbjct: 251 ELDLSQNQLVGHFPSCLTSLTGLRVLDLSSNQLTGTVP-STLGSLPSLEYLSLFDNDFEG 309

Query: 243 SFSLSVLANHSRLEVLQI----SRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQY 298
           SFS   LAN S L VL++    S LQ+ +E+  W P+FQL V+ LR CN+   +P FL +
Sbjct: 310 SFSFGSLANLSNLMVLKLCSKSSSLQVLSES-SWKPKFQLSVIALRSCNME-KVPHFLIH 367

Query: 299 QYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNN 358
           Q DLR++DLS+N ++G  P+WLL NNTKL+ L L NNF      +P S  DLL L  S N
Sbjct: 368 QKDLRHVDLSNNKISGKLPSWLLANNTKLKVLLLQNNFFTSF-QIPKSAHDLLFLDASAN 426

Query: 359 NFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFL 418
            F  + P+N G I P L Y+++ +N F+G++P S+G    L +LDLS N+F G+LP+ F+
Sbjct: 427 EFNHLFPENIGWIFPHLRYMNIYKNDFQGNLPSSLGNMKGLQYLDLSHNSFHGKLPRSFV 486

Query: 419 TGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVS 478
            GC S+A + +SHN   G+IFP+  ++T L  L++++N FTG++ +GL +  +L +LD+S
Sbjct: 487 NGCYSMAILKLSHNKLSGEIFPESTNLTSLLGLFMDNNLFTGKIGQGLRSLINLELLDMS 546

Query: 479 NNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSF 538
           NN L+G +P W+G   +L  LL+S N L+G++   L N    ++LD+S N L G +    
Sbjct: 547 NNNLTGVIPSWIGELPSLTALLISDNFLKGEIPTSLFNKSSLQLLDLSTNSLSGGIPPHH 606

Query: 539 NHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLR 598
           +    +  L L +N+L+G+I   L  + ++  LDLR+N FSGNIP  IN   N+  LLLR
Sbjct: 607 DSRDGVV-LLLQDNNLSGTIADTLLVNVEI--LDLRNNRFSGNIPEFINTQ-NISILLLR 662

Query: 599 GNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNI-WPWMEE-------------G 644
           GN L G IP QLC L  I ++D+S N L+GSIPSC +N  + + +E              
Sbjct: 663 GNKLTGRIPHQLCGLSNIQLLDLSNNRLNGSIPSCLSNTSFGFGKECTSYDYDFGISFPS 722

Query: 645 DPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGG 704
           D FNGF     L       I  Y+ S L L     D +   Q  +++F  K+RY++Y GG
Sbjct: 723 DVFNGFSLHQDLSSNKNSGI--YFKSLLMLDPFSMDYKAATQ-TKIEFATKHRYDAYMGG 779

Query: 705 VLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSY 764
            L+ + G+DLS NEL+GEIP   G L EL ALNLSHN+LSG IP+S S+++ +ES DLS+
Sbjct: 780 NLKLLFGIDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSLSSMEKMESFDLSF 839

Query: 765 NKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPAVLKNC 824
           N+L+G+IP +L+EL  L++F VS+N+LSG  P  +QF  FD  +Y GN  LCG    ++C
Sbjct: 840 NRLQGRIPAQLTELTSLSVFKVSHNNLSGVIPEGRQFNTFDAESYLGNRLLCGQPTNRSC 899

Query: 825 STDLPPPPPMTPAEEDESAIDMVAFNWSFAVSYVTVIVGLLALLFLNSYWHRQWFFLID 883
           + +          E++ES IDM +F WSF  +YVT++VG+LA L  +S W R WF  +D
Sbjct: 900 NNN-SFEEADDEVEDNESTIDMESFYWSFGAAYVTILVGILASLSFDSPWKRFWFDTVD 957

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221162|ref|NP_177559.1| receptor like protein 15 [Arabidopsis thaliana] gi|12323812|gb|AAG51871.1|AC079678_1 disease resistance protein, putative; 1096-4664 [Arabidopsis thaliana] gi|332197443|gb|AEE35564.1| receptor like protein 15 [Arabidopsis thaliana]

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/959 (40%), Positives = 564/959 (58%), Gaps = 103/959 (10%)

Query: 12  LWVAIAFVQMHGLKSCLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCSWER 71
           +WV +   Q+HG KSC+D E+I L E++  + S ++   ++++L +W ++ TSDCC W+ 
Sbjct: 12  IWVMLLMGQLHGYKSCIDEEKIALFELRKHMISRTE---SESVLPTWTNDTTSDCCRWKG 68

Query: 72  IKCNVTTAN-----------------------------------------------YNNN 84
           + CN  +                                                 Y + 
Sbjct: 69  VACNRVSGRVTEISFGGLSLKDNSLLNLSLLHPFEDVRSLNLSSSRCSGLFDDVEGYKSL 128

Query: 85  GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLD 144
             L++L+IL++  N F+ S+   L++ TSLT+LFL  NN+   F P K L +L NLE+LD
Sbjct: 129 RKLRKLEILDLASNKFNNSIFHFLSAATSLTTLFLRSNNMDGSF-PAKELRDLTNLELLD 187

Query: 145 LSGNGLIGSLTMQ------------------GEKLELLNNKCREM----NARICELKNLV 182
           LS N   GS+ +Q                     +EL    C ++     + ICEL N+ 
Sbjct: 188 LSRNRFNGSIPIQELSSLRKLKALDLSGNEFSGSMELQGKFCTDLLFSIQSGICELNNMQ 247

Query: 183 ELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQG 242
           EL+LS NKL G LP CL++LT LRVLDL+SN+L+G +P S+  +L SLEYLSL  N+F+G
Sbjct: 248 ELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSSL-GSLQSLEYLSLFDNDFEG 306

Query: 243 SFSLSVLANHSRLEVLQI----SRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQY 298
           SFS   LAN S L VL++    S LQ+ +E+  W P+FQL V+ LR CN+   +P FL +
Sbjct: 307 SFSFGSLANLSNLMVLKLCSKSSSLQVLSES-SWKPKFQLSVIALRSCNME-KVPHFLLH 364

Query: 299 QYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNN 358
           Q DLR++DLS NN++G  P+WLL NNTKL+ L L NN       +P S  +LL L +S N
Sbjct: 365 QKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFTSF-QIPKSAHNLLFLDVSAN 423

Query: 359 NFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFL 418
           +F  + P+N G I P L YL+ S+N+F+ ++P S+G    + ++DLS N+F G LP+ F+
Sbjct: 424 DFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNLPRSFV 483

Query: 419 TGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVS 478
            GC S+A + +SHN   G+IFP+  + T +  L++++N FTG++ +GL +  +L +LD+S
Sbjct: 484 NGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQGLRSLINLELLDMS 543

Query: 479 NNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSF 538
           NN L+G +P W+G   +L  LL+S N L+GD+ + L N    ++LD+S N L G +    
Sbjct: 544 NNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVIPPQH 603

Query: 539 NHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLR 598
           +  + +  L L +N L+G+IP  L  + ++  LDLR+N FSG IP  IN   N+  LLLR
Sbjct: 604 DSRNGVV-LLLQDNKLSGTIPDTLLANVEI--LDLRNNRFSGKIPEFINIQ-NISILLLR 659

Query: 599 GNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNI-WPWMEE-------------G 644
           GNN  G IP QLC L  I ++D+S N L+G+IPSC +N  + + +E              
Sbjct: 660 GNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKECTSYDYDFGISFPS 719

Query: 645 DPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGG 704
           D FNGF             I  Y+ S L L     D +   Q  +++F  K+RY++Y GG
Sbjct: 720 DVFNGFSLHQDFSSNKNGGI--YFKSLLTLDPLSMDYKAATQ-TKIEFATKHRYDAYMGG 776

Query: 705 VLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSY 764
            L+ + G+DLS NEL+GEIP   G L EL ALNLSHN+LSG IP+S S+++ +ES DLS+
Sbjct: 777 NLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISSMEKMESFDLSF 836

Query: 765 NKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPAVLKNC 824
           N+L+G+IP +L+EL  L++F VS+N+LSG  P  +QF  FD  +Y GN  LCG    ++C
Sbjct: 837 NRLQGRIPSQLTELTSLSVFKVSHNNLSGVIPQGRQFNTFDAESYFGNRLLCGQPTNRSC 896

Query: 825 STDLPPPPPMTPAEEDESAIDMVAFNWSFAVSYVTVIVGLLALLFLNSYWHRQWFFLID 883
           + +          E DES IDMV+F  SFA +YVT+++G+LA L  +S W R WF+ +D
Sbjct: 897 NNN-SYEEADNGVEADESIIDMVSFYLSFAAAYVTILIGILASLSFDSPWSRFWFYKVD 954

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12324907|gb|AAG52409.1|AC020579_11 putative disease resistance protein; 46848-50365 [Arabidopsis thaliana]

 Score =  638 bits (1645), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 380/929 (40%), Positives = 554/929 (59%), Gaps = 97/929 (10%)

Query: 20  QMHGLKSCLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCSWERIKCNVTTA 79
           Q+HG KSC+D E+I L E++  + S ++   ++++L +W ++ TSDCC W+ + CN  + 
Sbjct: 3   QLHGYKSCIDEEKIALFELRKHMISRTE---SESVLPTWTNDTTSDCCRWKGVACNRVSG 59

Query: 80  N-----------------------------------------------YNNNGSLKQLKI 92
                                                           Y +   L++L+I
Sbjct: 60  RVTEISFGGLSLKDNSLLNLSLLHPFEDVRSLNLSSSRCSGLFDDVEGYKSLRKLRKLEI 119

Query: 93  LNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIG 152
           L++  N F+ S+   L++ TSLT+LFL  NN+   F P K L +L NLE+LDLS N   G
Sbjct: 120 LDLASNKFNNSIFHFLSAATSLTTLFLRSNNMDGSF-PAKELRDLTNLELLDLSRNRFNG 178

Query: 153 SLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTS 212
           S+ +QG                ICEL N+ EL+LS NKL G LP CL++LT LRVLDL+S
Sbjct: 179 SIPIQG----------------ICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSS 222

Query: 213 NQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQI----SRLQIETE 268
           N+L+G +P S+  +L SLEYLSL  N+F+GSFS   LAN S L VL++    S LQ+ +E
Sbjct: 223 NKLTGTVPSSL-GSLQSLEYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSE 281

Query: 269 NFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLE 328
           +  W P+FQL V+ LR CN+   +P FL +Q DLR++DLS NN++G  P+WLL NNTKL+
Sbjct: 282 S-SWKPKFQLSVIALRSCNME-KVPHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLK 339

Query: 329 FLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGS 388
            L L NN       +P S  +LL L +S N+F  + P+N G I P L YL+ S+N+F+ +
Sbjct: 340 VLLLQNNLFTSF-QIPKSAHNLLFLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQEN 398

Query: 389 IPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQL 448
           +P S+G    + ++DLS N+F G LP+ F+ GC S+A + +SHN   G+IFP+  + T +
Sbjct: 399 LPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNI 458

Query: 449 AWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEG 508
             L++++N FTG++ +GL +  +L +LD+SNN L+G +P W+G   +L  LL+S N L+G
Sbjct: 459 LGLFMDNNLFTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKG 518

Query: 509 DVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQL 568
           D+ + L N    ++LD+S N L G +    +  + +  L L +N L+G+IP  L  + ++
Sbjct: 519 DIPMSLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVV-LLLQDNKLSGTIPDTLLANVEI 577

Query: 569 MTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDG 628
             LDLR+N FSG IP  IN   N+  LLLRGNN  G IP QLC L  I ++D+S N L+G
Sbjct: 578 --LDLRNNRFSGKIPEFINIQ-NISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNG 634

Query: 629 SIPSCFTNI-WPWMEE-------------GDPFNGFVFGYTLVVEHFPAISAYYNSTLNL 674
           +IPSC +N  + + +E              D FNGF             I  Y+ S L L
Sbjct: 635 TIPSCLSNTSFGFGKECTSYDYDFGISFPSDVFNGFSLHQDFSSNKNGGI--YFKSLLTL 692

Query: 675 IFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELH 734
                D +   Q  +++F  K+RY++Y GG L+ + G+DLS NEL+GEIP   G L EL 
Sbjct: 693 DPLSMDYKAATQ-TKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELR 751

Query: 735 ALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGP 794
           ALNLSHN+LSG IP+S S+++ +ES DLS+N+L+G+IP +L+EL  L++F VS+N+LSG 
Sbjct: 752 ALNLSHNNLSGVIPKSISSMEKMESFDLSFNRLQGRIPSQLTELTSLSVFKVSHNNLSGV 811

Query: 795 TPNTKQFANFDESNYRGNLNLCGPAVLKNCSTDLPPPPPMTPAEEDESAIDMVAFNWSFA 854
            P  +QF  FD  +Y GN  LCG    ++C+ +          E DES IDMV+F  SFA
Sbjct: 812 IPQGRQFNTFDAESYFGNRLLCGQPTNRSCNNN-SYEEADNGVEADESIIDMVSFYLSFA 870

Query: 855 VSYVTVIVGLLALLFLNSYWHRQWFFLID 883
            +YVT+++G+LA L  +S W R WF+ +D
Sbjct: 871 AAYVTILIGILASLSFDSPWSRFWFYKVD 899

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345471|ref|XP_003636801.1| Receptor kinase [Medicago truncatula] gi|355502736|gb|AES83939.1| Receptor kinase [Medicago truncatula]

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 408/953 (42%), Positives = 544/953 (57%), Gaps = 106/953 (11%)

Query: 1   MGRYLIIFKFSLWVAIAFVQM---HGLKSCLDNERIGLLEIKTFIKSVSDMQFADAILVS 57
           M R  +     LW+ +  V +     L+ CL+ E++GLL++KTF+ S S  ++ +  L S
Sbjct: 1   MERVFVKNHLCLWIVVVVVVLFLVKELEGCLEKEKLGLLDLKTFLISNSTSKYNN--LTS 58

Query: 58  WVDNRTSDCCSWERIKCNVTTANYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSL 117
           W D    DCCSWER+KCN TT      G +  L             L+  +T  T+ T L
Sbjct: 59  W-DKSDVDCCSWERVKCNHTT------GHVMDL-------------LLGGVTIPTNTTYL 98

Query: 118 FLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGE------------------ 159
           ++        F     LP   +L  LDLS N   G + ++G                   
Sbjct: 99  WI--------FNFSYFLP-FNHLVHLDLSANYFDGWVEIEGNFILDFFFNYHESNLVFRD 149

Query: 160 ---KLELLNNKCREMNARI----------CELKNLVELNLSWNKLDGSLPQCLSNLTYLR 206
               L    ++   +N R+          C +KNL EL+LS N + G  PQCL NLT LR
Sbjct: 150 GFTTLSHTTHQPLNVNRRLTENKIILTGLCGMKNLQELDLSRNGMSGYFPQCLRNLTSLR 209

Query: 207 VLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQIS----R 262
           VLDL+SN   GN+P S   +L SLEYLSL   NF G FS S L NHS+LEV  +S     
Sbjct: 210 VLDLSSNNFVGNIP-SFIISLKSLEYLSLFDTNFDGIFSFSSLNNHSKLEVFLLSPKTNN 268

Query: 263 LQIETENFP-WLPRFQLKVLNLRRCNIS----GTIPSFLQYQYDLRYIDLSHNNLAGTFP 317
           L +ETE  P W P FQLKVL LR C ++    GT P+FL YQ++L+ +DLSHN L+G FP
Sbjct: 269 LYVETEESPSWHPTFQLKVLQLRNCFLNSKRDGTFPTFLLYQHELQLLDLSHNKLSGNFP 328

Query: 318 TWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVY 377
           +W+L+NNTKLE L+L NN   G L LP  K  LL L ISNN   G L ++ G I P L Y
Sbjct: 329 SWILENNTKLETLYLMNNSFTGTLELPTFKHGLLDLQISNNKIGGQLQEDIGKIFPNLYY 388

Query: 378 LDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQ 437
           +++S+NSFEG +P S+G    +  LDLS+NNFSGEL    ++   SL  + +SHN F G 
Sbjct: 389 VNLSKNSFEGILPSSIGEMQTIRTLDLSNNNFSGELSSHLISNLTSLRLLRLSHNSFHGL 448

Query: 438 IFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLD 497
           + P   ++T+L WLYLN+N F+G +E+G+ N  SL  LD+SNNMLSG++P W+G F+ L 
Sbjct: 449 V-PLLSNLTRLNWLYLNNNSFSGVIEDGVSNNSSLFSLDISNNMLSGRIPRWIGRFTKLS 507

Query: 498 VLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGS 557
           VL +S+N L+G++   L NL     LD+SEN L   L + F +   +  L+L  N+L G+
Sbjct: 508 VLSLSKNRLQGEIPNELCNLISLSYLDLSENNLSDFLPYCFKNFKYMKFLYLQKNALQGN 567

Query: 558 IPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIA 617
           IP A  Q ++L +LDLRDN F GNIP  IN  S LR LLL GN L G IP  +C L  + 
Sbjct: 568 IPYAFSQLTKLTSLDLRDNNFFGNIPQWINRLSKLRVLLLAGNKLTGPIPIYVCELEHVR 627

Query: 618 IVDISYNLLDGSIPSCFTNIWPWMEEGDP--------------------FNGFVFGYTLV 657
           I+D+S+N ++ +IP C  NI   M E                       +      Y  +
Sbjct: 628 IMDLSHNWINETIPPCIKNISFKMVEFQTTAVGGRAVQNDNDSKDKIQYYGNTATSYIFL 687

Query: 658 VEHF-----PAISAYYNSTLNLIFSGEDNRELR-QRVEVKFMAKNRYESYKGGVLEYMTG 711
           V+            +YNS+L+L     D   +  + VE++F  K+ Y SYKG  L  MTG
Sbjct: 688 VDDIWFTPGNTFDIFYNSSLSLNHPIADEYMISYEIVEIEFRTKSYYLSYKGNNLNLMTG 747

Query: 712 LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQI 771
           LDLSSN L+G IP  IG L+++ ALNLSHN  SGSIP +F NL  IES+DLSYN L G +
Sbjct: 748 LDLSSNNLSGSIPPEIGELRDIKALNLSHNRFSGSIPGTFPNLINIESLDLSYNNLSGAL 807

Query: 772 PLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPAVLKNCS-TDLPP 830
           P  L+ L  LAIFNVSYN  SG  P T QFANFDE+NYRGN +LCG  +   C+ T + P
Sbjct: 808 PQNLTNLYSLAIFNVSYNKFSGRVPTTMQFANFDENNYRGNSDLCGSVINITCNHTSIFP 867

Query: 831 PPPMTPAEEDESAIDMVAFNWSFAVSYVTVIVGLLALLFLNSYWHRQWFFLID 883
           P   T   + ++AIDM +F WS   SYVTV++GL  +L++NS+W R WF  +D
Sbjct: 868 PASTT---QHQTAIDMESFYWSCVASYVTVVIGLAVILWVNSHWCRVWFRYVD 917

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186495296|ref|NP_177557.2| receptor like protein 13 [Arabidopsis thaliana] gi|332197441|gb|AEE35562.1| receptor like protein 13 [Arabidopsis thaliana]

 Score =  619 bits (1597), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 367/839 (43%), Positives = 523/839 (62%), Gaps = 42/839 (5%)

Query: 71  RIKCNVTTANYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKP 130
           R   ++ T +YN+    ++L+IL++  N F+  + P L S TSL SL L GNN+G  F P
Sbjct: 132 RFNGSIPTQDYNSLRRFRKLEILDLSDNLFNSRIFPFLNSATSLKSLSLWGNNMGGPF-P 190

Query: 131 MKVLPNLRNLEVLDLSGNGLIGSLTMQG----EKLELLNNKCREMNARI----------- 175
            K L +L N+E+LDLS N   GS+ ++      KL+ L+    E ++ +           
Sbjct: 191 AKELRDLTNVELLDLSRNRFNGSIPVRALFALRKLKALDLSDNEFSSSVELQGKFAKTKP 250

Query: 176 ----CELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLE 231
               C  KN+ EL LS NKL G  P CL++LT LRVLDL+SNQL+GN+P S  ANL SLE
Sbjct: 251 LSGTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVP-SALANLESLE 309

Query: 232 YLSLSGNNFQGSFSLSVLANHSRLEVL----QISRLQIETENFPWLPRFQLKVLNLRRCN 287
           YLSL GNNF+G FSL +LAN S+L+VL    Q + L++E E   W P+FQL V+ LR CN
Sbjct: 310 YLSLFGNNFEGFFSLGLLANLSKLKVLRLDSQSNSLEVEFET-SWKPKFQLVVIALRSCN 368

Query: 288 ISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSK 347
           +   +P FL +Q DL ++DLS N + G FP+WLL+NNTKLE L L NN       LP S 
Sbjct: 369 LE-KVPHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFTSF-QLPKSA 426

Query: 348 RDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSN 407
            +LL L +S N F  +   NFG ILP LV ++++ N F+G++P S+     + FLDLS N
Sbjct: 427 HNLLFLNVSVNKFNHLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHN 486

Query: 408 NFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLL 467
            F G+LP++FL GC +L  + +SHN   G++FP+  + T+L  + +++N FTG + +G  
Sbjct: 487 RFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFR 546

Query: 468 NAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISE 527
           + PSL++LD+SNN L+G +P W+G    L  L +S N LEG++   L N+   ++LD+S 
Sbjct: 547 SLPSLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSS 606

Query: 528 NKLYGPLEFSFNHSSSLWH---LFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPP 584
           N+L G +     H SS++H   L L NN+L+G IP  L  +  ++ LDLR+N  SGN+P 
Sbjct: 607 NRLSGDIP---PHVSSIYHGAVLLLQNNNLSGVIPDTLLLN--VIVLDLRNNRLSGNLPE 661

Query: 585 LINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEG 644
            IN   N+  LLLRGNN  G IP Q C L  I ++D+S N  +GSIPSC +N    + +G
Sbjct: 662 FINTQ-NISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSFGLRKG 720

Query: 645 DPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGG 704
           D      + Y +      A    Y  +L +I       E   + +++F  K+RY++Y GG
Sbjct: 721 DD----SYRYDVPSRFGTAKDPVYFESLLMIDEFNMVNETNSQTKIEFATKHRYDAYMGG 776

Query: 705 VLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSY 764
            L+ + G+DLS NEL+GEIP  +G L EL ALNLSHN+LSG I  SFS LK +ES+DLS+
Sbjct: 777 NLKLLFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNVESLDLSF 836

Query: 765 NKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPAVLKNC 824
           N+L+G IPL+L+++  LA+FNVSYN+LSG  P  +QF  F+  +Y GN  LCG ++  +C
Sbjct: 837 NRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQGRQFNTFETQSYFGNPLLCGKSIDISC 896

Query: 825 STDLPPPPPMTPAEEDESAIDMVAFNWSFAVSYVTVIVGLLALLFLNSYWHRQWFFLID 883
           +++    P     E DES +DM +F WSF  +YVT+++G+LA L  +S W R WF+++D
Sbjct: 897 ASN-NFHPTDNGVEADESTVDMESFYWSFVAAYVTILLGILASLSFDSPWSRAWFYIVD 954

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12323814|gb|AAG51873.1|AC079678_3 disease resistance protein, putative; 11609-15699 [Arabidopsis thaliana]

 Score =  619 bits (1596), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 367/839 (43%), Positives = 523/839 (62%), Gaps = 42/839 (5%)

Query: 71   RIKCNVTTANYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKP 130
            R   ++ T +YN+    ++L+IL++  N F+  + P L S TSL SL L GNN+G  F P
Sbjct: 200  RFNGSIPTQDYNSLRRFRKLEILDLSDNLFNSRIFPFLNSATSLKSLSLWGNNMGGPF-P 258

Query: 131  MKVLPNLRNLEVLDLSGNGLIGSLTMQG----EKLELLNNKCREMNARI----------- 175
             K L +L N+E+LDLS N   GS+ ++      KL+ L+    E ++ +           
Sbjct: 259  AKELRDLTNVELLDLSRNRFNGSIPVRALFALRKLKALDLSDNEFSSSVELQGKFAKTKP 318

Query: 176  ----CELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLE 231
                C  KN+ EL LS NKL G  P CL++LT LRVLDL+SNQL+GN+P S  ANL SLE
Sbjct: 319  LSGTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVP-SALANLESLE 377

Query: 232  YLSLSGNNFQGSFSLSVLANHSRLEVL----QISRLQIETENFPWLPRFQLKVLNLRRCN 287
            YLSL GNNF+G FSL +LAN S+L+VL    Q + L++E E   W P+FQL V+ LR CN
Sbjct: 378  YLSLFGNNFEGFFSLGLLANLSKLKVLRLDSQSNSLEVEFET-SWKPKFQLVVIALRSCN 436

Query: 288  ISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSK 347
            +   +P FL +Q DL ++DLS N + G FP+WLL+NNTKLE L L NN       LP S 
Sbjct: 437  LE-KVPHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFTSF-QLPKSA 494

Query: 348  RDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSN 407
             +LL L +S N F  +   NFG ILP LV ++++ N F+G++P S+     + FLDLS N
Sbjct: 495  HNLLFLNVSVNKFNHLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHN 554

Query: 408  NFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLL 467
             F G+LP++FL GC +L  + +SHN   G++FP+  + T+L  + +++N FTG + +G  
Sbjct: 555  RFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFR 614

Query: 468  NAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISE 527
            + PSL++LD+SNN L+G +P W+G    L  L +S N LEG++   L N+   ++LD+S 
Sbjct: 615  SLPSLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSS 674

Query: 528  NKLYGPLEFSFNHSSSLWH---LFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPP 584
            N+L G +     H SS++H   L L NN+L+G IP  L  +  ++ LDLR+N  SGN+P 
Sbjct: 675  NRLSGDIP---PHVSSIYHGAVLLLQNNNLSGVIPDTLLLN--VIVLDLRNNRLSGNLPE 729

Query: 585  LINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEG 644
             IN   N+  LLLRGNN  G IP Q C L  I ++D+S N  +GSIPSC +N    + +G
Sbjct: 730  FINTQ-NISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSFGLRKG 788

Query: 645  DPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGG 704
            D      + Y +      A    Y  +L +I       E   + +++F  K+RY++Y GG
Sbjct: 789  DD----SYRYDVPSRFGTAKDPVYFESLLMIDEFNMVNETNSQTKIEFATKHRYDAYMGG 844

Query: 705  VLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSY 764
             L+ + G+DLS NEL+GEIP  +G L EL ALNLSHN+LSG I  SFS LK +ES+DLS+
Sbjct: 845  NLKLLFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNVESLDLSF 904

Query: 765  NKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPAVLKNC 824
            N+L+G IPL+L+++  LA+FNVSYN+LSG  P  +QF  F+  +Y GN  LCG ++  +C
Sbjct: 905  NRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQGRQFNTFETQSYFGNPLLCGKSIDISC 964

Query: 825  STDLPPPPPMTPAEEDESAIDMVAFNWSFAVSYVTVIVGLLALLFLNSYWHRQWFFLID 883
            +++    P     E DES +DM +F WSF  +YVT+++G+LA L  +S W R WF+++D
Sbjct: 965  ASN-NFHPTDNGVEADESTVDMESFYWSFVAAYVTILLGILASLSFDSPWSRAWFYIVD 1022

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12323813|gb|AAG51872.1|AC079678_2 disease resistance protein, putative; 6346-10057 [Arabidopsis thaliana]

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 394/950 (41%), Positives = 548/950 (57%), Gaps = 99/950 (10%)

Query: 12  LWVAIAFVQMHGLKSCLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCSWER 71
           +WV +  VQ+ G K C++ ER  LLE+K ++ S +     D++L +W ++  S+CC WE 
Sbjct: 12  IWVMLLLVQLRGYKCCIEKERKALLELKKYMISKTADWGLDSVLPTWTNDTKSNCCRWEG 71

Query: 72  IKCNVTTAN-------------------------------------YNN-NG-------- 85
           +KCN T+                                       YN  NG        
Sbjct: 72  LKCNQTSGRIIELSIGQTNFKESSLLNLSLLHPFEELRSLNLSGEIYNEFNGLFDDVEGY 131

Query: 86  ----SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLE 141
                L+ L+IL++  NSF+ S+ P L + TSLT+LF++ N +G G  P+K L NL  LE
Sbjct: 132 ESLRRLRNLEILDLSSNSFNNSIFPFLNAATSLTTLFIQSNYIG-GPLPIKELKNLTKLE 190

Query: 142 VLDLSGNGLIGSLTMQG--EKLELLNNKCREMNARI-----CELKNLVELNLSWNKLDGS 194
           +LDLS +G  GS+        LE+L      ++  I     CE+KNL +L+L  N  +G 
Sbjct: 191 LLDLSRSGYNGSIPELKVLTNLEVLGLAWNHLDGPIPKEVFCEMKNLRQLDLRGNYFEGQ 250

Query: 195 LPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSR 254
           LP CL NL  LRVLDL+SNQLSGNLP S F +L SLEYLSLS NNF+G FSL+ LAN ++
Sbjct: 251 LPVCLGNLNKLRVLDLSSNQLSGNLPAS-FNSLESLEYLSLSDNNFEGFFSLNPLANLTK 309

Query: 255 LEVLQISR----LQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHN 310
           L+V ++S     LQ+ETE+  WLP+FQL V  L  C++ G IP+FL YQ +LR +DLS N
Sbjct: 310 LKVFRLSSTSEMLQVETES-NWLPKFQLTVAALPFCSL-GKIPNFLVYQTNLRLVDLSSN 367

Query: 311 NLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGM 370
            L+G  PTWLL+NN +L+ L L NN    +  +P     L  L  S N+  G+LPDN G 
Sbjct: 368 RLSGDIPTWLLENNPELKVLQLKNNSFT-IFQIPTIVHKLQVLDFSANDITGVLPDNIGH 426

Query: 371 ILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVS 430
           +LP L++++ S N F+G++P SMG    + FLDLS NNFSGELP+  LTGC SL  + +S
Sbjct: 427 VLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLLTGCFSLITLQLS 486

Query: 431 HNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSG-QLPHW 489
           HN F G I P    +T L  L +++N FTG +  GL    +L I D SNN L+G      
Sbjct: 487 HNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNNRLTGLISSSI 546

Query: 490 VGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFL 549
             + S+L +LL+S N LEG +   L  +     LD+S N L G L  S  +S     +FL
Sbjct: 547 PPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIKIFL 606

Query: 550 HNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQ 609
           HNNS  G +P  L +++ +  LDLR+N+ SG+IP  +N    +  LLLRGNNL G+IP++
Sbjct: 607 HNNSFTGPLPVTLLENAYI--LDLRNNKLSGSIPQFVNT-GKMITLLLRGNNLTGSIPRK 663

Query: 610 LCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFV----FGYTLVVEHFPA-- 663
           LC L  I ++D+S N L+G IP C  ++   + EG   +GF     FG +L +E + +  
Sbjct: 664 LCDLTSIRLLDLSDNKLNGVIPPCLNHLSTELGEGIGLSGFSQEISFGDSLQMEFYRSTF 723

Query: 664 ----ISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNEL 719
                  YY+ST  +             VE++F AK RY+S+ GG L+YM GLDLSSNEL
Sbjct: 724 LVDEFMLYYDSTYMI-------------VEIEFAAKQRYDSFSGGTLDYMYGLDLSSNEL 770

Query: 720 TGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELN 779
           +G IP+ +G L +L ALNLS N LS SIP +FS LK IES+DLSYN L+G IP +L+ L 
Sbjct: 771 SGVIPAELGDLSKLRALNLSRNLLSSSIPANFSKLKDIESLDLSYNMLQGNIPHQLTNLT 830

Query: 780 YLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPAVLKNCSTD------LPPPPP 833
            LA+FNVS+N+LSG  P   QF  F++++Y GN  LCG    ++C               
Sbjct: 831 SLAVFNVSFNNLSGIIPQGGQFNTFNDNSYLGNPLLCGTPTDRSCEGKKNTKEADNGGEE 890

Query: 834 MTPAEEDESAIDMVAFNWSFAVSYVTVIVGLLALLFLNSYWHRQWFFLID 883
               ++DE+AIDMV   W+   +Y   ++G+L L+  +  W R W  ++D
Sbjct: 891 EEEDDDDEAAIDMVVLYWTTGSTYAIALIGILVLMCFDCPWRRTWLCIVD 940

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12321378|gb|AAG50756.1|AC079131_1 hypothetical protein [Arabidopsis thaliana]

 Score =  603 bits (1554), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 376/877 (42%), Positives = 527/877 (60%), Gaps = 38/877 (4%)

Query: 22   HGLKSCLDNERIGLLEIKTFIKSVSDMQFADAILVSWV-DNRTSDCCSWERIKCNVTTAN 80
            HG  SC+++ER GLLE+K ++ ++S+  +       W  D   SDCC WER+KC++T+  
Sbjct: 922  HGHISCIESERKGLLELKAYL-NISEYPY------DWPNDTNNSDCCKWERVKCDLTSGR 974

Query: 81   YNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNL 140
            Y +   LK L+IL+I  N  + +++P + + +SL +L L GNN+   F PMK L NLRNL
Sbjct: 975  YKSFERLKNLEILDISENGVNNTVLPFINTASSLKTLILHGNNMEGTF-PMKELINLRNL 1033

Query: 141  EVLDLSGNGLIGSL-------TMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDG 193
            E+LDLS N  +G +        +QG  L++ +NK    N  +C+LKNL EL+LS NK  G
Sbjct: 1034 ELLDLSKNQFVGPVPDLANFHNLQG--LDMSDNKFSGSNKGLCQLKNLRELDLSQNKFTG 1091

Query: 194  SLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHS 253
              PQC  +LT L+VLD++SN  +G +P S+  NL S+EYL+LS N F+G FSL ++AN S
Sbjct: 1092 QFPQCFDSLTQLQVLDISSNNFNGTVP-SLIRNLDSVEYLALSDNEFKGFFSLELIANLS 1150

Query: 254  RLEVLQISR---LQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHN 310
            +L+V ++S    L    +     P+FQL V+ L+ CN+   +PSF+Q+Q DL  I+LS+N
Sbjct: 1151 KLKVFKLSSRSNLLRLKKLSSLQPKFQLSVIELQNCNLE-NVPSFIQHQKDLHVINLSNN 1209

Query: 311  NLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLV-ISNNNFIGMLPDNFG 369
             L G FP WLL+    L  L L NN L  +L LP      L ++ +S NNF   LP+N G
Sbjct: 1210 KLTGVFPYWLLEKYPNLRVLLLQNNSLT-MLELPRLLNHTLQILDLSANNFDQRLPENIG 1268

Query: 370  MILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNV 429
             +LP + +L++S N F+  +P S G    + FLDLS NNFSG LP +FL GC SL  + +
Sbjct: 1269 KVLPNIRHLNLSNNGFQWILPSSFGEMKDIKFLDLSHNNFSGSLPMKFLIGCSSLHTLKL 1328

Query: 430  SHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHW 489
            S+N F GQIFPK  +   L  L  N+N FTG + +GL N  SL +LD+SNN L G +P W
Sbjct: 1329 SYNKFFGQIFPKQTNFGSLVVLIANNNLFTG-IADGLRNVQSLGVLDLSNNYLQGVIPSW 1387

Query: 490  VGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFL 549
             G F     L +S N LEG +   L +    +ILD+S NK  G L   F     +  L+L
Sbjct: 1388 FGGFF-FAYLFLSNNLLEGTLPSTLFSKPTFKILDLSGNKFSGNLPSHFT-GMDMSLLYL 1445

Query: 550  HNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQ 609
            ++N  +G+IPS L +   ++ LDLR+N+ SG IP  +  +  L +LLLRGN L G+IP  
Sbjct: 1446 NDNEFSGTIPSTLIK--DVLVLDLRNNKLSGTIPHFVKNEFIL-SLLLRGNTLTGHIPTD 1502

Query: 610  LCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVE-HFPAISAYY 668
            LC LR I I+D++ N L GSIP+C  N+      G   N  V G  L  E +     A Y
Sbjct: 1503 LCGLRSIRILDLANNRLKGSIPTCLNNV----SFGRRLNYEVNGDKLPFEINDDEEFAVY 1558

Query: 669  NSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIG 728
            +  L L      +        V+F +K+RY+SY      +M GLDLSSNEL+G+IP  +G
Sbjct: 1559 SRLLVLPRQYSPDYTGVLMFNVEFASKSRYDSYTQESFNFMFGLDLSSNELSGDIPKELG 1618

Query: 729  YLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSY 788
             LQ + ALNLSHN LSG IP+SFSNL  IES+DLS+N LRG IP +LS+L+Y+ +FNVSY
Sbjct: 1619 DLQRIRALNLSHNSLSGLIPQSFSNLTDIESIDLSFNLLRGPIPQDLSKLDYMVVFNVSY 1678

Query: 789  NDLSGPTPNTKQFANFDESNYRGNLNLCGPAVLKNCSTDLPPP--PPMTPAEEDESAIDM 846
            N+LSG  P+  +F+  DE+N+ GNL LCG A+ ++C  +           + ++E+ IDM
Sbjct: 1679 NNLSGSIPSHGKFSTLDETNFIGNLLLCGSAINRSCDDNSTTEFLESDDQSGDEETTIDM 1738

Query: 847  VAFNWSFAVSYVTVIVGLLALLFLNSYWHRQWFFLID 883
              F WS A +Y    +  +  L  +S W R WF  +D
Sbjct: 1739 EIFYWSLAATYGVTWITFIVFLCFDSPWRRVWFHFVD 1775

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	883
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.833	0.736	0.396	8.9e-141
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.841	0.769	0.392	5.1e-138
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.890	0.882	0.382	9.3e-130
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.824	0.672	0.393	1.5e-129
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.831	0.752	0.397	5.2e-129
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.891	0.841	0.354	2.2e-114
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.565	0.549	0.386	9.7e-80
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.828	0.836	0.252	2.4e-62
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.827	0.585	0.283	1.5e-60
TAIR|locus:2096349	860	RLP31 "receptor like protein 3	0.720	0.739	0.254	2.2e-47

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1377 (489.8 bits), Expect = 8.9e-141, P = 8.9e-141
 Identities = 303/764 (39%), Positives = 445/764 (58%)

Query:   127 GFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNL 186
             G  P++ L  LR L+ LDLS N    S+ +QG+       K + ++   C  KN+ EL L
Sbjct:   212 GSIPVRALFALRKLKALDLSDNEFSSSVELQGKFA-----KTKPLSGT-CPWKNMEELKL 265

Query:   187 SWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSL 246
             S NKL G  P CL++LT LRVLDL+SNQL+GN+P S  ANL SLEYLSL GNNF+G FSL
Sbjct:   266 SNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVP-SALANLESLEYLSLFGNNFEGFFSL 324

Query:   247 SVLANHSRLEVLQI----SRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDL 302
              +LAN S+L+VL++    + L++E E   W P+FQL V+ LR CN+   +P FL +Q DL
Sbjct:   325 GLLANLSKLKVLRLDSQSNSLEVEFET-SWKPKFQLVVIALRSCNLE-KVPHFLLHQKDL 382

Query:   303 RYIDLSHNNLAGTFPTWLLQXXXXXXXXXXXXXXXXXXXXXPDSKRDLLHLVISNNNFIG 362
              ++DLS N + G FP+WLL+                     P S  +LL L +S N F  
Sbjct:   383 HHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFTSFQL-PKSAHNLLFLNVSVNKFNH 441

Query:   363 MLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRXXXXXXXXXXXXGELPKQFLTGCV 422
             +   NFG ILP LV ++++ N F+G++P S+                 G+LP++FL GC 
Sbjct:   442 LFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKGCY 501

Query:   423 SLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNML 482
             +L  + +SHN   G++FP+  + T+L  + +++N FTG + +G  + PSL++LD+SNN L
Sbjct:   502 NLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNVLDISNNKL 561

Query:   483 SGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSS 542
             +G +P W+G    L  L +S N LEG++   L N+   ++LD+S N+L G +     H S
Sbjct:   562 TGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIP---PHVS 618

Query:   543 SLWH---LFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSXXXXXXXXX 599
             S++H   L L NN+L+G IP  L  +  ++ LDLR+N  SGN+P  IN  +         
Sbjct:   619 SIYHGAVLLLQNNNLSGVIPDTLLLN--VIVLDLRNNRLSGNLPEFINTQNISILLLRGN 676

Query:   600 XXXXXXIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVE 659
                   IP Q C L  I ++D+S N  +GSIPSC +N    + +GD      + Y +   
Sbjct:   677 NFTGQ-IPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSFGLRKGDDS----YRYDVPSR 731

Query:   660 HFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNEL 719
                A    Y  +L +I       E   + +++F  K+RY++Y GG L+ + G+DLS NEL
Sbjct:   732 FGTAKDPVYFESLLMIDEFNMVNETNSQTKIEFATKHRYDAYMGGNLKLLFGMDLSENEL 791

Query:   720 TGEIPSAIGYLQEXXXXXXXXXXXXGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELN 779
             +GEIP  +G L E            G I  SFS LK +ES+DLS+N+L+G IPL+L+++ 
Sbjct:   792 SGEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNVESLDLSFNRLQGPIPLQLTDMI 851

Query:   780 YLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPAVLKNCSTDLXXXXXMTPAEE 839
              LA+FNVSYN+LSG  P  +QF  F+  +Y GN  LCG ++  +C+++          E 
Sbjct:   852 SLAVFNVSYNNLSGIVPQGRQFNTFETQSYFGNPLLCGKSIDISCASNNFHPTD-NGVEA 910

Query:   840 DESAIDMVAFNWSFAVSYVTVIVGLLALLFLNSYWHRQWFFLID 883
             DES +DM +F WSF  +YVT+++G+LA L  +S W R WF+++D
Sbjct:   911 DESTVDMESFYWSFVAAYVTILLGILASLSFDSPWSRAWFYIVD 954

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 1351 (480.6 bits), Expect = 5.1e-138, P = 5.1e-138
 Identities = 304/774 (39%), Positives = 452/774 (58%)

Query:   127 GFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNL 186
             G  P++ L +LR L+ LDLSGN   GS+ +QG+      +    + + ICEL N+ EL+L
Sbjct:   195 GSIPIQELSSLRKLKALDLSGNEFSGSMELQGK---FCTDLLFSIQSGICELNNMQELDL 251

Query:   187 SWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSL 246
             S NKL G LP CL++LT LRVLDL+SN+L+G +P S+  +L SLEYLSL  N+F+GSFS 
Sbjct:   252 SQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSSL-GSLQSLEYLSLFDNDFEGSFSF 310

Query:   247 SVLANHSRLEVLQI----SRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDL 302
               LAN S L VL++    S LQ+ +E+  W P+FQL V+ LR CN+   +P FL +Q DL
Sbjct:   311 GSLANLSNLMVLKLCSKSSSLQVLSES-SWKPKFQLSVIALRSCNME-KVPHFLLHQKDL 368

Query:   303 RYIDLSHNNLAGTFPTWLLQXXXXXXXXXXXXXXXXXXXXXPDSKRDLLHLVISNNNFIG 362
             R++DLS NN++G  P+WLL                      P S  +LL L +S N+F  
Sbjct:   369 RHVDLSDNNISGKLPSWLL-ANNTKLKVLLLQNNLFTSFQIPKSAHNLLFLDVSANDFNH 427

Query:   363 MLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRXXXXXXXXXXXXGELPKQFLTGCV 422
             + P+N G I P L YL+ S+N+F+ ++P S+G                G LP+ F+ GC 
Sbjct:   428 LFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCY 487

Query:   423 SLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNML 482
             S+A + +SHN   G+IFP+  + T +  L++++N FTG++ +GL +  +L +LD+SNN L
Sbjct:   488 SMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQGLRSLINLELLDMSNNNL 547

Query:   483 SGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSS 542
             +G +P W+G   +L  LL+S N L+GD+ + L N    ++LD+S N L G +    +  +
Sbjct:   548 TGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVIPPQHDSRN 607

Query:   543 SLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSXXXXXXXXXXXX 602
              +  L L +N L+G+IP  L  + ++  LDLR+N FSG IP  IN  +            
Sbjct:   608 GVV-LLLQDNKLSGTIPDTLLANVEI--LDLRNNRFSGKIPEFINIQNISILLLRGNNFT 664

Query:   603 XXXIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNI-WPWMEEGDPFNGFVFGYTLVVEHF 661
                IP QLC L  I ++D+S N L+G+IPSC +N  + + +E   ++ + FG +   + F
Sbjct:   665 GQ-IPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKECTSYD-YDFGISFPSDVF 722

Query:   662 PAISA------------YYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYM 709
                S             Y+ S L L     D +   Q  +++F  K+RY++Y GG L+ +
Sbjct:   723 NGFSLHQDFSSNKNGGIYFKSLLTLDPLSMDYKAATQ-TKIEFATKHRYDAYMGGNLKLL 781

Query:   710 TGLDLSSNELTGEIPSAIGYLQEXXXXXXXXXXXXGSIPRSFSNLKMIESMDLSYNKLRG 769
              G+DLS NEL+GEIP   G L E            G IP+S S+++ +ES DLS+N+L+G
Sbjct:   782 FGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISSMEKMESFDLSFNRLQG 841

Query:   770 QIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPAVLKNCSTDLX 829
             +IP +L+EL  L++F VS+N+LSG  P  +QF  FD  +Y GN  LCG    ++C+ +  
Sbjct:   842 RIPSQLTELTSLSVFKVSHNNLSGVIPQGRQFNTFDAESYFGNRLLCGQPTNRSCNNNSY 901

Query:   830 XXXXMTPAEEDESAIDMVAFNWSFAVSYVTVIVGLLALLFLNSYWHRQWFFLID 883
                     E DES IDMV+F  SFA +YVT+++G+LA L  +S W R WF+ +D
Sbjct:   902 EEAD-NGVEADESIIDMVSFYLSFAAAYVTILIGILASLSFDSPWSRFWFYKVD 954

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1273 (453.2 bits), Expect = 9.3e-130, P = 9.3e-130
 Identities = 312/816 (38%), Positives = 431/816 (52%)

Query:    85 GSLKQLKILNIGFNSFXXXXXXXXXXXXXXXXXXXEGNNLGVGFKPMKVLPNLRNLEVLD 144
             GSL+ L+ L++G N +                     N    GF P++ L NL +LEVLD
Sbjct:    76 GSLRNLETLDLGVNFYDTSVLPYLNEAVSLKTLILHDNLFKGGF-PVQELINLTSLEVLD 134

Query:   145 LSGNGLIGSLTMQG-------EKLELLNNKCREMNAR--ICELKNLVELNLSWNKLDGSL 195
             L  N   G L  Q          L+L NNK      +  IC L+ L EL LS N+ +G +
Sbjct:   135 LKFNKFSGQLPTQELTNLRNLRALDLSNNKFSGSLQKQGICRLEQLQELRLSRNRFEGEI 194

Query:   196 PQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRL 255
             P C S  + LRVLDL+SN LSG +P  + ++  S+EYLSL  N+F+G FSL ++   + L
Sbjct:   195 PLCFSRFSKLRVLDLSSNHLSGKIPYFI-SDFKSMEYLSLLDNDFEGLFSLGLITELTEL 253

Query:   256 EVLQISR----LQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNN 311
             +V ++S     LQI   N     + QL  + L  CN+ G IP FL YQ +LR IDLS+N 
Sbjct:   254 KVFKLSSRSGMLQIVETNVSGGLQSQLSSIMLSHCNL-GKIPGFLWYQQELRVIDLSNNI 312

Query:   312 LAGTFPTWLLQXXXXXXXXXXXXXXXXXXXXXPDSKRDLLHLVISNNNFIGMLPDNFGMI 371
             L+G FPTWLL+                     P + R L  L +S NNF   LP + G+I
Sbjct:   313 LSGVFPTWLLENNTELQALLLQNNSFKTLTL-PRTMRRLQILDLSVNNFNNQLPKDVGLI 371

Query:   372 LPELVYLDMSQNSFEGSIPPSMGYTVRXXXXXXXXXXXXGELPKQFLTGCVSLAFMNVSH 431
             L  L +L++S N F G++P SM                 G+LP+   TGC SL+++ +SH
Sbjct:   372 LASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKLSH 431

Query:   432 NYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVG 491
             N F G I  K    T L  L +++N FTG++   LLN   L ++D+SNN+L+G +P W+G
Sbjct:   432 NRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRWLG 491

Query:   492 NFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHN 551
             NF  L+VL +S N L+G +   L N+    +LD+S N L G L    + S   + L LHN
Sbjct:   492 NFF-LEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGSLPLR-SSSDYGYILDLHN 549

Query:   552 NSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSXXXXXXXXXXXXXXXIPQQLC 611
             N+L GSIP  L+   +L  LDLR+N+ SGNIP L                    IP +LC
Sbjct:   550 NNLTGSIPDTLWYGLRL--LDLRNNKLSGNIP-LFRSTPSISVVLLRENNLTGKIPVELC 606

Query:   612 HLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTL-VVEHFPAI--SAYY 668
              L  + ++D ++N L+ SIPSC TN+      G   N     Y   ++ +F  I    YY
Sbjct:   607 GLSNVRMLDFAHNRLNESIPSCVTNLS--FGSGGHSNADSDWYPASLLSNFMEIYTEVYY 664

Query:   669 NSTL-NLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAI 727
              S + +  FS + + +    V+V+F  K RY+ Y  G L  M GLDLSSNEL+G IP  +
Sbjct:   665 ESLIVSDRFSLDYSVDFN--VQVEFAVKQRYDLYMRGTLNQMFGLDLSSNELSGNIPEEL 722

Query:   728 GYLQEXXXXXXXXXXXXGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVS 787
             G L+             GSIP SFSNL+ IES+DLS+NKL G IP +L+ L  L +FNVS
Sbjct:   723 GDLKRVRSLNLSRNSLSGSIPGSFSNLRSIESLDLSFNKLHGTIPSQLTLLQSLVVFNVS 782

Query:   788 YNDLSGPTPNTKQFANFDESNYRGNLNLCGPAVLKNCSTDLXXXXXMTPAEEDESAIDMV 847
             YN+LSG  P  KQF  F E +Y GN  LCG    ++C             +++   +D+V
Sbjct:   783 YNNLSGVIPQGKQFNTFGEKSYLGNFLLCGSPTKRSCGGTTISSGKEYEDDDESGLLDIV 842

Query:   848 AFNWSFAVSYVTVIVGLLALLFLNSYWHRQWFFLID 883
                WS   +YVTV++G L  L  +S W R WF L+D
Sbjct:   843 VLWWSLGTTYVTVMMGFLVFLCFDSPWRRAWFCLVD 878

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 1271 (452.5 bits), Expect = 1.5e-129, P = 1.5e-129
 Identities = 299/759 (39%), Positives = 411/759 (54%)

Query:   145 LSGNGLIG-SLTMQGEKLELLNNKC---REMNARICELKNLVELNLSWNKLDGSLPQCLS 200
             + GNG +G  +    + L+   N+     E    IC L  L EL+LS N L  SLP CL 
Sbjct:   320 VGGNGFLGLEIPTSLQVLDFKRNQLSLTHEGYLGICRLMKLRELDLSSNALT-SLPYCLG 378

Query:   201 NLTYLRVLDLTSNQLSGNLPISVFANLTS-LEYLSLSGNNFQGSFSLSVLANHSRLEVLQ 259
             NLT+LR LDL++NQL+GNL  S  + L S LEYLSL  NNF GSF  + L N +RL V +
Sbjct:   379 NLTHLRTLDLSNNQLNGNLS-SFVSGLPSVLEYLSLLDNNFDGSFLFNSLVNQTRLTVFK 437

Query:   260 ISR----LQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGT 315
             +S     +Q++TE+  W P FQLK+L L  C++  T+  FL +Q DL ++DLSHN L GT
Sbjct:   438 LSSKVGVIQVQTES-SWAPLFQLKMLYLSNCSLGSTMLGFLVHQRDLCFVDLSHNKLTGT 496

Query:   316 FPTWLLQXXXXXXXXXXXXXXXXXXXXXPDSKRDLLHLVISNNNFIGMLPDNFGMILPEL 375
             FPTWL++                     P     L  L IS+N     + ++ GM+ P L
Sbjct:   497 FPTWLVKNNTRLQTILLSGNSLTKLQL-PILVHGLQVLDISSNMIYDSIQEDIGMVFPNL 555

Query:   376 VYLDMSQNSFEGSIPPSMGYTVRXXXXXXXXXXXXGELPKQFLTGCVSLAFMNVSHNYFG 435
              +++ S N F+G+IP S+G                G+LP  FL+GC SL  + +S+N   
Sbjct:   556 RFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQ 615

Query:   436 GQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSN 495
             G+IF K+ ++T L  L+L+ N FTG LEEGLL + +L +LD+S+N  SG LP W+G  S 
Sbjct:   616 GKIFSKHANLTGLVGLFLDGNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISR 675

Query:   496 LDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLN 555
             L  L MS N L+G     L       ++DIS N   G +  + N  S L  L L NN   
Sbjct:   676 LSYLYMSGNQLKGPFPF-LRQSPWVEVMDISHNSFSGSIPRNVNFPS-LRELRLQNNEFT 733

Query:   556 GSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSXXXXXXXXXXXXXXXIPQQLCHLRK 615
             G +P  LF+++ L  LDLR+N FSG I   I++ S               IP ++C L +
Sbjct:   734 GLVPGNLFKAAGLEVLDLRNNNFSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSE 793

Query:   616 IAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFV----FGYTLVVEHFPAISAYYNST 671
             + ++D+S+N   G IPSCF+ +    E+ D     V    F Y   + H       Y S 
Sbjct:   794 VGLLDLSHNQFRGPIPSCFSKMSFGAEQNDRTMSLVADFDFSYITFLPH-----CQYGSH 848

Query:   672 LNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQ 731
             LNL     +  + +    V F+ K+RYE+Y+G +L YM GLDLSSNEL+GEIP  IG LQ
Sbjct:   849 LNLDDGVRNGYQPKPATVVDFLTKSRYEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQ 908

Query:   732 EXXXXXXXXXXXXGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDL 791
                          GSIP S S LK +ES+DLS NKL G IP  L++LN L   N+SYN+L
Sbjct:   909 NIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNNKLDGSIPPALADLNSLGYLNISYNNL 968

Query:   792 SGPTPNTKQFANFDESNYRGNLNLCGPAVLKNCSTDLXXX--XXMTPAEEDES-----AI 844
             SG  P       FDE +Y GN +LCG    KNC +          T A+E+E+      I
Sbjct:   969 SGEIPFKGHLVTFDERSYIGNAHLCGLPTNKNCISQRVPEPPSVSTHAKEEENEEEGNVI 1028

Query:   845 DMVAFNWSFAVSYVTVIVGLLALLFLNSYWHRQWFFLID 883
             DMV F W+ A  Y++  + L A L+++S W R+WF+ +D
Sbjct:  1029 DMVWFYWTCAAVYISTSLALFAFLYIDSRWSREWFYRVD 1067

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 1266 (450.7 bits), Expect = 5.2e-129, P = 5.2e-129
 Identities = 307/772 (39%), Positives = 427/772 (55%)

Query:   136 NLRNLEVLDLSGNGLIGSLTMQGEK----LELLNNKCREMNARI-----CELKNLVELNL 186
             +L  L+ LDLS N     + +Q  K    LE+L      ++  I     CE+KNL +L+L
Sbjct:   208 HLEKLKALDLSANDFSSLVELQELKVLTNLEVLGLAWNHLDGPIPKEVFCEMKNLRQLDL 267

Query:   187 SWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSL 246
               N  +G LP CL NL  LRVLDL+SNQLSGNLP S F +L SLEYLSLS NNF+G FSL
Sbjct:   268 RGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPAS-FNSLESLEYLSLSDNNFEGFFSL 326

Query:   247 SVLANHSRLEVLQISR----LQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDL 302
             + LAN ++L+V ++S     LQ+ETE+  WLP+FQL V  L  C++ G IP+FL YQ +L
Sbjct:   327 NPLANLTKLKVFRLSSTSEMLQVETES-NWLPKFQLTVAALPFCSL-GKIPNFLVYQTNL 384

Query:   303 RYIDLSHNNLAGTFPTWLLQXXXXXXXXXXXXXXXXXXXXXPDSKRDLLHLVISNNNFIG 362
             R +DLS N L+G  PTWLL+                     P     L  L  S N+  G
Sbjct:   385 RLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFTIFQI-PTIVHKLQVLDFSANDITG 443

Query:   363 MLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRXXXXXXXXXXXXGELPKQFLTGCV 422
             +LPDN G +LP L++++ S N F+G++P SMG                GELP+  LTGC 
Sbjct:   444 VLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLLTGCF 503

Query:   423 SLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNML 482
             SL  + +SHN F G I P    +T L  L +++N FTG +  GL    +L I D SNN L
Sbjct:   504 SLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNNRL 563

Query:   483 SGQLPHWVG-NFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHS 541
             +G +   +  + S+L +LL+S N LEG +   L  +     LD+S N L G L  S  +S
Sbjct:   564 TGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVVNS 623

Query:   542 SSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSXXXXXXXXXXX 601
                  +FLHNNS  G +P  L +++ +  LDLR+N+ SG+IP  +N              
Sbjct:   624 MYGIKIFLHNNSFTGPLPVTLLENAYI--LDLRNNKLSGSIPQFVNTGKMITLLLRGNNL 681

Query:   602 XXXXIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFV----FGYTLV 657
                 IP++LC L  I ++D+S N L+G IP C  ++   + EG   +GF     FG +L 
Sbjct:   682 TGS-IPRKLCDLTSIRLLDLSDNKLNGVIPPCLNHLSTELGEGIGLSGFSQEISFGDSLQ 740

Query:   658 VEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSN 717
             +E +   S +      L +   D+  +   VE++F AK RY+S+ GG L+YM GLDLSSN
Sbjct:   741 MEFYR--STFLVDEFMLYY---DSTYMI--VEIEFAAKQRYDSFSGGTLDYMYGLDLSSN 793

Query:   718 ELTGEIPSAIGYLQEXXXXXXXXXXXXGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSE 777
             EL+G IP+ +G L +             SIP +FS LK IES+DLSYN L+G IP +L+ 
Sbjct:   794 ELSGVIPAELGDLSKLRALNLSRNLLSSSIPANFSKLKDIESLDLSYNMLQGNIPHQLTN 853

Query:   778 LNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPAVLKNCSTDLXXXXXMTPA 837
             L  LA+FNVS+N+LSG  P   QF  F++++Y GN  LCG    ++C             
Sbjct:   854 LTSLAVFNVSFNNLSGIIPQGGQFNTFNDNSYLGNPLLCGTPTDRSCEGKKNTKEADNGG 913

Query:   838 EE------DESAIDMVAFNWSFAVSYVTVIVGLLALLFLNSYWHRQWFFLID 883
             EE      DE+AIDMV   W+   +Y   ++G+L L+  +  W R W  ++D
Sbjct:   914 EEEEEDDDDEAAIDMVVLYWTTGSTYAIALIGILVLMCFDCPWRRTWLCIVD 965

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 1128 (402.1 bits), Expect = 2.2e-114, P = 2.2e-114
 Identities = 292/824 (35%), Positives = 416/824 (50%)

Query:    81 YNNNGSLKQLKILNIGFNSFXXXXXXXXXXXXXXXXXXXEGNNLGVGFKPMKVLPNLRNL 140
             Y +   L+ LKI+++  N F                     N +   F P+K L +L NL
Sbjct:   117 YRSLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPF-PIKGLKDLTNL 175

Query:   141 EVLDLSGNGLIGSLT--MQGEKLELLNNKCREMNA--RICELKNLVELN---LSWNKLDG 193
             E+LDL  N L GS+   +  +KL+ L+    + ++   + EL+NL+ L    L+ N +DG
Sbjct:   176 ELLDLRANKLNGSMQELIHLKKLKALDLSSNKFSSSMELQELQNLINLEVLGLAQNHVDG 235

Query:   194 SLP-QCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANH 252
              +P +    L  LR LDL  N   G +P+ +  +L  L  L LS N   G    S  +  
Sbjct:   236 PIPIEVFCKLKNLRDLDLKGNHFVGQIPLCL-GSLKKLRVLDLSSNQLSGDLPSSFSSLE 294

Query:   253 SRLEVLQISRLQIETENFPWLPRFQLK----VLNLRRCNISGTIPSFLQYQYDLRYIDLS 308
             S LE L +S    +  +F   P   L     V+ LR C++   IPSFL YQ  LR +DLS
Sbjct:   295 S-LEYLSLSDNNFDG-SFSLNPLTNLTNLKFVVVLRFCSLE-KIPSFLLYQKKLRLVDLS 351

Query:   309 HNNLAGTFPTWLLQXXXXXXXXXXXXXXXXXXXXXPDSKRDLLHLVISNNNFIGMLPDNF 368
              NNL+G  PTWLL                      P    +L     S NN IG  PD  
Sbjct:   352 SNNLSGNIPTWLL-TNNPELEVLQLQNNSFTIFPIPTMVHNLQIFDFSANN-IGKFPDKM 409

Query:   369 GMILPELVYLDMSQNSFEGSIPPSMGYTVRXXXXXXXXXXXXGELPKQFLTGCVSLAFMN 428
                LP LV L+ S N F+G  P S+G                G+LP+ F+TGCVS+ F+ 
Sbjct:   410 DHALPNLVRLNGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSFVTGCVSIMFLK 469

Query:   429 VSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPH 488
             +SHN F G+  P+  +   L  L +++N FTG +  GL N+  L ILD+SNN LSG +P 
Sbjct:   470 LSHNKFSGRFLPRETNFPSLDVLRMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSGAIPR 529

Query:   489 WVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLF 548
             W+  F  LD +L+S N LEG +   L  +     LD+S N+  G L    +    ++ +F
Sbjct:   530 WLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALPSHVDSELGIY-MF 588

Query:   549 LHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSXXXXXXXXXXXXXXXIPQ 608
             LHNN+  G IP  L +S Q+  LDLR+N+ SG+IP   ++                 IP+
Sbjct:   589 LHNNNFTGPIPDTLLKSVQI--LDLRNNKLSGSIPQF-DDTQSINILLLKGNNLTGSIPR 645

Query:   609 QLCHLRKIAIVDISYNLLDGSIPSCFTNI-WPWMEEGDPFNGFVFGYTLVVEHFPAISAY 667
             +LC L  + ++D+S N L+G IPSC +N+ +  ++E    +                   
Sbjct:   646 ELCDLSNVRLLDLSDNKLNGVIPSCLSNLSFGRLQE----DAMALNIPPSFLQTSLEMEL 701

Query:   668 YNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKG------GVLEYMTGLDLSSNELTG 721
             Y ST  L+   E +R   Q  E+KF AK RY+SY G      G+L  M G+DLS+NEL+G
Sbjct:   702 YKSTF-LVDKIEVDRSTYQETEIKFAAKQRYDSYSGRSEFSEGILRLMYGMDLSNNELSG 760

Query:   722 EIPSAIGYLQEXXXXXXXXXXXXGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYL 781
              IP+ +G L +            GSIP SFS L  +ES+DLS+N L+G IP  LS L  L
Sbjct:   761 VIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSL 820

Query:   782 AIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPAVLKNCSTDLXXXXXMTPAEE-- 839
             A+F+VS N+LSG  P  +QF  F+E +Y GN  LCGP   ++C T+          EE  
Sbjct:   821 AVFDVSSNNLSGIIPQGRQFNTFEEESYLGNPLLCGPPTSRSCETNKSPEEADNGQEEED 880

Query:   840 DESAIDMVAFNWSFAVSYVTVIVGLLALLFLNSYWHRQWFFLID 883
             D++AIDM+ F +S A  YVT ++G+L L+  +  W R W  ++D
Sbjct:   881 DKAAIDMMVFYFSTASIYVTALIGVLVLMCFDCPWRRAWLRIVD 924

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 202/523 (38%), Positives = 283/523 (54%)

Query:    81 YNNNGSLKQLKILNIGFNSFXXXXXXXXXXXXXXXXXXXEGNNLGVGFKPMKVLPNLRNL 140
             Y +   L+ L+ILN   N F                     NN+  G  P+K L NL NL
Sbjct:   114 YKSLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNM-YGPIPLKELKNLTNL 172

Query:   141 EVLDLSGNGLIGSLTMQG----EKLELL----NNKCREMNARI-CELKNLVELNLSWNKL 191
             E+LDLSGN + GS+ ++     +KL+ L    N     M  ++ CE+KNL EL+L     
Sbjct:   173 ELLDLSGNRIDGSMPVREFPYLKKLKALDLSSNGIYSSMEWQVFCEMKNLQELDLRGINF 232

Query:   192 DGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLAN 251
              G LP C  NL  LR LDL+SNQL+GN+P S F++L SLEYLSLS N+F+G FSL+ L N
Sbjct:   233 VGQLPLCFGNLNKLRFLDLSSNQLTGNIPPS-FSSLESLEYLSLSDNSFEGFFSLNPLTN 291

Query:   252 HSRLEVLQISR----LQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDL 307
              ++L+V   S     +Q++ E+  W P FQL VL LR C++   IP+FL YQ +L  +DL
Sbjct:   292 LTKLKVFIFSSKDDMVQVKIES-TWQPLFQLSVLVLRLCSLE-KIPNFLMYQKNLHVVDL 349

Query:   308 SHNNLAGTFPTWLLQXXXXXXXXXXXXXXXXXXXXXPDSKRDLLHLVISNNNFIGMLPDN 367
             S N ++G  PTWLL+                     P S  +L  L  S NN  G+ PDN
Sbjct:   350 SGNRISGIIPTWLLENNPELEVLQLKNNSFTIFQM-PTSVHNLQVLDFSENNIGGLFPDN 408

Query:   368 FGMILPELVYLDMSQNSFEGSIPPSMGYTVRXXXXXXXXXXXXGELPKQFLTGCVSLAFM 427
             FG +LP LV+++ S N F+G+ P SMG                GELP+ F++ C SL+ +
Sbjct:   409 FGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYNNLSGELPQSFVSSCFSLSIL 468

Query:   428 NVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLP 487
              +SHN F G   P+  + T L  L +N+N FTG++  GLL    L ILD+SNN L G+LP
Sbjct:   469 QLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIGVGLLTLVDLCILDMSNNFLEGELP 528

Query:   488 HWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHL 547
               +  F  L+ L +S N L G  ++P S++ +  +L +  N   GP+  +F  S  +  L
Sbjct:   529 PLLLVFEYLNFLDLSGNLLSG--ALP-SHVSLDNVLFLHNNNFTGPIPDTFLGSIQI--L 583

Query:   548 FLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDS 590
              L NN L+G+IP  +  +  +  L LR N  +G IP  + E S
Sbjct:   584 DLRNNKLSGNIPQFV-DTQDISFLLLRGNSLTGYIPSTLCEFS 625

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 2.4e-62, Sum P(2) = 2.4e-62
 Identities = 203/804 (25%), Positives = 338/804 (42%)

Query:     4 YLIIFKFSLWVAIAFVQMHGLKSCLDNERIGLLEIKTFIKSVSDMQFADAILV--SWVDN 61
             +L +F FS +  +  V    +  C   +R  LLE K   K         + L   SW + 
Sbjct:    10 FLFLF-FSNFRGVFAVP--NIHLCHFEQRDALLEFKNEFKIKKPCFGCPSPLKTKSWENG 66

Query:    62 RTSDCCSWERIKCNVTTANYNNNGSLKQLKILNIGFNSFXXXXXXXXXXXXXXXXXXXEG 121
               SDCC W+ I C+  T      G + ++ ++    + +                   + 
Sbjct:    67 --SDCCHWDGITCDAKT------GEVIEIDLMCSCLHGWFHSNSNLSMLQNFHFLTTLDL 118

Query:   122 NNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQ-GEKLELL------NNKCREMNAR 174
             +   +  +    + NL +L  LDLSGN   G +    G    L       NN   E+ + 
Sbjct:   119 SYNHLSGQISSSIGNLSHLTTLDLSGNNFSGWIPSSLGNLFHLTSLHLYDNNFGGEIPSS 178

Query:   175 ICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLS 234
             +  L  L  L+LS N   G +P    +L  L +L L +N+LSGNLP+ V  NLT L  +S
Sbjct:   179 LGNLSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDNNKLSGNLPLEVI-NLTKLSEIS 237

Query:   235 LSGNNFQGSF-----SLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNIS 289
             LS N F G+      SLS+L + S      +  +       P      + ++ L    +S
Sbjct:   238 LSHNQFTGTLPPNITSLSILESFSASGNNFVGTIPSSLFTIP-----SITLIFLDNNQLS 292

Query:   290 GTIP-SFLQYQYDLRYIDLSHNNLAGTFPTWLLQXXXXXXXXXXXXXXXXXXXXXPDSKR 348
             GT+    +    +L  + L  NNL G  PT + +                       S  
Sbjct:   293 GTLEFGNISSPSNLLVLQLGGNNLRGPIPTSISRLVNLRTLDLSHFNIQGQVDFNIFSHL 352

Query:   349 DLL-HLVISNNNFIGMLPDNFGM-ILPELVYLDMSQNSF----EGSIP-PSMGYTVRXXX 401
              LL +L +S++N    +  N  +     L+ LD+S N      + S+  P +G       
Sbjct:   353 KLLGNLYLSHSNTTTTIDLNAVLSCFKMLISLDLSGNHVLVTNKSSVSDPPLGLI----G 408

Query:   402 XXXXXXXXXGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTG- 460
                       E P   L     +  +++S+N   GQ+ P ++ + QL ++++++N F G 
Sbjct:   409 SLNLSGCGITEFP-DILRTQRQMRTLDISNNKIKGQV-PSWL-LLQLEYMHISNNNFIGF 465

Query:   461 ----RLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSN 516
                 +LE+ ++  PS+     SNN  SG++P ++ +  +L +L +S N+  G +   +  
Sbjct:   466 ERSTKLEKTVVPKPSMKHFFGSNNNFSGKIPSFICSLRSLIILDLSNNNFSGAIPPCVGK 525

Query:   517 LQ-VARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRD 575
              +     L++  N+L G L  +     SL  L + +N L G +P +L   S L  L++  
Sbjct:   526 FKSTLSDLNLRRNRLSGSLPKTI--IKSLRSLDVSHNELEGKLPRSLIHFSTLEVLNVES 583

Query:   576 NEFSGNIPPLINEDSXXXXXXXXXXXXXXXIPQQLCHLRKIAIVDISYNLLDGSIPS-CF 634
             N  +   P  ++                  I +      K+ I+DIS N  +G++PS CF
Sbjct:   584 NRINDTFPFWLSSLKKLQVLVLRSNAFHGRIHKT--RFPKLRIIDISRNHFNGTLPSDCF 641

Query:   635 TNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSG---EDNRELRQRVEVK 691
                W  M   +  N   F      E +   S YY+ ++ L+  G   E  R L+    + 
Sbjct:   642 VE-WTGMHSLEK-NEDRFN-----EKYMG-SGYYHDSMVLMNKGLEMELVRILKIYTALD 693

Query:   692 FMAKNRYESY---KGGVLEYMTGLDLSSNELTGEIPSAIGYLQEXXXXXXXXXXXXGSIP 748
             F   N++E       G+L+ +  L+LSSN  TG IPS++G L+E            G IP
Sbjct:   694 FSG-NKFEGEIPRSIGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIP 752

Query:   749 RSFSNLKMIESMDLSYNKLRGQIP 772
             +   NL  +  M+ S+N+L GQ+P
Sbjct:   753 QELGNLSYLAYMNFSHNQLVGQVP 776

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 630 (226.8 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 222/784 (28%), Positives = 348/784 (44%)

Query:   121 GNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMN---ARI-C 176
             G+N  VG  P + L NL NL++L L+   L G +  Q  +L  + +   + N     I  
Sbjct:   151 GDNELVGDIP-ETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPA 209

Query:   177 ELKNLVELNL---SWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYL 233
             EL N  +L +   + N L+G++P  L  L  L +L+L +N L+G +P S    ++ L+YL
Sbjct:   210 ELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIP-SQLGEMSQLQYL 268

Query:   234 SLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFP---WLPRFQLKVLNLRRCNISG 290
             SL  N  QG    S LA+   L+ L +S   + T   P   W    QL  L L   ++SG
Sbjct:   269 SLMANQLQGLIPKS-LADLGNLQTLDLSANNL-TGEIPEEFW-NMSQLLDLVLANNHLSG 325

Query:   291 TIP-SFLQYQYDLRYIDLSHNNLAGTFPTWLLQXXXXXXXXXXXXXXXXXXXXXPDSKRD 349
             ++P S      +L  + LS   L+G  P  L +                          +
Sbjct:   326 SLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVE 385

Query:   350 LLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRXXXXXXXXXXX 409
             L  L + NN   G L  +    L  L +L +  N+ EG +P  +    +           
Sbjct:   386 LTDLYLHNNTLEGTLSPSISN-LTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRF 444

Query:   410 XGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNA 469
              GE+P++ +  C SL  +++  N+F G+I P    + +L  L+L  N+  G L   L N 
Sbjct:   445 SGEIPQE-IGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNC 503

Query:   470 PSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENK 529
               L+ILD+++N LSG +P   G    L+ L++  NSL+G++   L +L+    +++S N+
Sbjct:   504 HQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNR 563

Query:   530 LYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINED 589
             L G +      SSS     + NN     IP  L  S  L  L L  N+ +G IP  + + 
Sbjct:   564 LNGTIH-PLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKI 622

Query:   590 SXXXXXXXXXXXXXXXIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNG 649
                             IP QL   +K+  +D++ N L G IP       PW+ +      
Sbjct:   623 RELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIP-------PWLGKLSQLGE 675

Query:   650 FVFGYTLVVEHFPAISAYYNSTLNLIFS--GED-NRELRQRV------EVKFMAKNRYES 700
                     VE  P  +  +N T  L+ S  G   N  + Q +       V  + KN++  
Sbjct:   676 LKLSSNQFVESLP--TELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSG 733

Query:   701 ---YKGGVLEYMTGLDLSSNELTGEIPSAIGYLQEXXXXXXXXXXX-XGSIPRSFSNLKM 756
                   G L  +  L LS N LTGEIP  IG LQ+             G IP +   L  
Sbjct:   734 SLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSK 793

Query:   757 IESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLC 816
             +E++DLS+N+L G++P  + ++  L   NVS+N+L G     KQF+ +   ++ GN  LC
Sbjct:   794 LETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLK--KQFSRWPADSFLGNTGLC 851

Query:   817 GPAVLKNCSTDLXXXXXMTPAEEDESAIDMVAFNWSFAVSYVTVIVGLLALLFLNSYWHR 876
             G + L  C+            ++  SA  +V  +   A+S +T I GL+ L+    +  R
Sbjct:   852 G-SPLSRCNR-----VRSNNKQQGLSARSVVIIS---AISALTAI-GLMILVIALFFKQR 901

Query:   877 QWFF 880
               FF
Sbjct:   902 HDFF 905

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2096349 RLP31 "receptor like protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 498 (180.4 bits), Expect = 2.2e-47, Sum P(2) = 2.2e-47
 Identities = 172/676 (25%), Positives = 288/676 (42%)

Query:   124 LGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQ-GE--KLELL----NNKCREMNARIC 176
             L    KP   L  L++L  L LS   L G +    G   +L LL    N    ++   I 
Sbjct:    94 LNNSLKPNSGLFKLQHLHNLTLSNCSLYGDIPSSLGNLFRLTLLDLSYNYLVGQVPPSIG 153

Query:   177 ELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLS 236
              L  L  L+L  NKL G LP  + NLT L  L  + N+ SGN+P++ F+NLT L  ++L 
Sbjct:   154 NLSRLTILDLWDNKLVGQLPASIGNLTQLEYLIFSHNKFSGNIPVT-FSNLTKLLVVNLY 212

Query:   237 GNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTI---P 293
              N+F+    L  ++    L+   +     E      LP+    + +LR  N+ G +   P
Sbjct:   213 NNSFESMLPLD-MSGFQNLDYFNVG----ENSFSGTLPKSLFTIPSLRWANLEGNMFKGP 267

Query:   294 SFLQYQYD----LRYIDLSHNNLAGTFPTWLLQXXXXXXXXXXXXXXXXXXXXXPDSKRD 349
                +  Y     L+Y+ LS N   G  P  L Q                       +   
Sbjct:   268 IEFRNMYSPSTRLQYLFLSQNKFDGPIPDTLSQYLNLIELDLSFNNLTGSFPTFLFTIPT 327

Query:   350 LLHLVISNNNFIGMLPDNFGMILPE--LVYLDMSQNSFEGSIPPSMGYTVRXXXXXXXXX 407
             L  + +  N+  G  P  FG +     L +L+ +QN F GSIP S+   +          
Sbjct:   328 LERVNLEGNHLKG--PVEFGNMSSSSSLKFLNFAQNEFNGSIPESVSQYLNLEELHLSFN 385

Query:   408 XXXGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFT--GRLEEG 465
                G +P+  ++    L +  +  N   G++ P ++   +L  + L++N F   G   EG
Sbjct:   386 NFIGTIPRS-ISKLAKLEYFCLEDNNMVGEV-PSWL--WRLTMVALSNNSFNSFGESSEG 441

Query:   466 LLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARI-LD 524
             L +   +  LD+S+N   G  PHW+    +L++L+MS N   G +   LS+  V+   L 
Sbjct:   442 L-DETQVQWLDLSSNSFQGPFPHWICKLRSLEILIMSDNRFNGSIPPCLSSFMVSLTDLI 500

Query:   525 ISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPP 584
             +  N L GPL   F +++ L  L +  N L+G +P +L     +  L++R N+     P 
Sbjct:   501 LRNNSLSGPLPDIFVNATKLLSLDVSRNKLDGVLPKSLIHCKAMQLLNVRSNKIKDKFPS 560

Query:   585 LINEDSXXXXXXXXXXXXXXXI--PQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWME 642
              +                   +  P      + + ++D+S+N L G++PS + + W  M 
Sbjct:   561 WLGSLPSLHVLILRSNEFYGTLYQPHASIGFQSLRVIDVSHNDLIGTLPSFYFSSWREMS 620

Query:   643 EGDPFNG-FVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFM--AKNRYE 699
                  +G F       +      +A++  ++ ++  G +    R   E K +  + NR+ 
Sbjct:   621 RLTGEDGDFRLSEAPYMGKVLNATAFFVDSMEIVNKGVETEFKRINEENKVINFSGNRFS 680

Query:   700 SY---KGGVLEYMTGLDLSSNELTGEIPSAIGYLQEXXXXXXXXXXXXGSIPRSFSNLKM 756
                    G+L+ +  L+LSSN  TG IP ++  L +            G IP+   +L  
Sbjct:   681 GNIPESIGLLKELRHLNLSSNAFTGNIPQSLANLMKLEALDLSLNQLSGQIPQGLGSLSF 740

Query:   757 IESMDLSYNKLRGQIP 772
             + +M+ SYN L G +P
Sbjct:   741 MSTMNFSYNFLEGPVP 756

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.2__1688__AT1G74190.1 annotation not avaliable (966 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	883
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-64
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-54
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-49
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-46
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-29
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-28
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	7e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  233 bits (597), Expect = 2e-64
 Identities = 187/653 (28%), Positives = 294/653 (45%), Gaps = 108/653 (16%)

Query: 181 LVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNF 240
           +V ++LS   + G +   +  L Y++ ++L++NQLSG +P  +F   +SL YL+LS NNF
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130

Query: 241 QGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQY 300
            GS     + N                          L+ L+L    +SG IP+ +    
Sbjct: 131 TGSIPRGSIPN--------------------------LETLDLSNNMLSGEIPNDIGSFS 164

Query: 301 DLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNF 360
            L+ +DL  N L G  P  L  N T LEFL L                            
Sbjct: 165 SLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTL---------------------------- 195

Query: 361 IGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTG 420
                               + N   G IP  +G    L ++ L  NN SGE+P + + G
Sbjct: 196 --------------------ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGG 234

Query: 421 CVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNN 480
             SL  +++ +N   G I     ++  L +L+L  N+ +G +   + +   L  LD+S+N
Sbjct: 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294

Query: 481 MLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNH 540
            LSG++P  V    NL++L +  N+  G + V L++L   ++L +  NK  G +  +   
Sbjct: 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354

Query: 541 SSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGN 600
            ++L  L L  N+L G IP  L  S  L  L L  N   G IP  +    +LR + L+ N
Sbjct: 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414

Query: 601 NLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEH 660
           +  G +P +   L  +  +DIS N L G I     N   W                    
Sbjct: 415 SFSGELPSEFTKLPLVYFLDISNNNLQGRI-----NSRKW-------------------D 450

Query: 661 FPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESY---KGGVLEYMTGLDLSSN 717
            P++    +   N  F G  +    +R+E   +++N++      K G L  +  L LS N
Sbjct: 451 MPSLQM-LSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509

Query: 718 ELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSE 777
           +L+GEIP  +   ++L +L+LSHN LSG IP SFS + ++  +DLS N+L G+IP  L  
Sbjct: 510 KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN 569

Query: 778 LNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPAVLKNCSTDLPP 830
           +  L   N+S+N L G  P+T  F   + S   GN++LCG     + ++ LPP
Sbjct: 570 VESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG----GDTTSGLPP 618

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  203 bits (519), Expect = 2e-54
 Identities = 169/549 (30%), Positives = 247/549 (44%), Gaps = 74/549 (13%)

Query: 277 QLKVLNLRRCNISGTI-PSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNN 335
           ++  ++L   NISG I  +  +  Y ++ I+LS+N L+G  P  +   ++ L +L L   
Sbjct: 70  RVVSIDLSGKNISGKISSAIFRLPY-IQTINLSNNQLSGPIPDDIFTTSSSLRYLNL--- 125

Query: 336 FLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGY 395
                               SNNNF G +P      +P L  LD+S N   G IP  +G 
Sbjct: 126 --------------------SNNNFTGSIPRGS---IPNLETLDLSNNMLSGEIPNDIGS 162

Query: 396 TVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLND 455
              L  LDL  N   G++P   LT   SL F+ ++ N   GQI  +   M  L W+YL  
Sbjct: 163 FSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221

Query: 456 NQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLS 515
           N  +G +   +    SL+ LD+  N L+G +P  +GN  NL  L + +N L G +   + 
Sbjct: 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF 281

Query: 516 NLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRD 575
           +LQ    LD+S+N L G +        +L  L L +N+  G IP AL    +L  L L  
Sbjct: 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341

Query: 576 NEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLC---HLRKIAIVDISYNLLDGSIPS 632
           N+FSG IP  + + +NL  L L  NNL G IP+ LC   +L K+ +     N L+G IP 
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS---NSLEGEIPK 398

Query: 633 CFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKF 692
                                          +    NS     FSGE   E  +   V F
Sbjct: 399 SLG---------------------ACRSLRRVRLQDNS-----FSGELPSEFTKLPLVYF 432

Query: 693 M------AKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGS 746
           +       + R  S K   +  +  L L+ N+  G +P + G  + L  L+LS N  SG+
Sbjct: 433 LDISNNNLQGRINSRKWD-MPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGA 490

Query: 747 IPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDE 806
           +PR   +L  +  + LS NKL G+IP ELS    L   ++S+N LSG  P     A+F E
Sbjct: 491 VPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP-----ASFSE 545

Query: 807 SNYRGNLNL 815
                 L+L
Sbjct: 546 MPVLSQLDL 554

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  188 bits (480), Expect = 2e-49
 Identities = 183/616 (29%), Positives = 288/616 (46%), Gaps = 73/616 (11%)

Query: 26  SCLDNERIGLLEIKTFIKSVSD-MQFADAILVSWVDNRTSDCCSWERIKCNVTTANYNNN 84
           S L  E + LL   +F  S++D +++    L +W  N ++D C W+ I CN        N
Sbjct: 24  SMLHAEELELL--LSFKSSINDPLKY----LSNW--NSSADVCLWQGITCN--------N 67

Query: 85  GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLD 144
            S  ++  +++   + S  +   +  L  + ++ L  N L  G  P  +     +L  L+
Sbjct: 68  SS--RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS-GPIPDDIFTTSSSLRYLN 124

Query: 145 LSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTY 204
           LS N   GS+                       + NL  L+LS N L G +P  + + + 
Sbjct: 125 LSNNNFTGSIPRG-------------------SIPNLETLDLSNNMLSGEIPNDIGSFSS 165

Query: 205 LRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQ 264
           L+VLDL  N L G +P S+  NLTSLE+L+L+ N   G                QI R  
Sbjct: 166 LKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVG----------------QIPREL 208

Query: 265 IETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNN 324
            + ++  W+         L   N+SG IP  +     L ++DL +NNL G  P+  L N 
Sbjct: 209 GQMKSLKWI--------YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNL 259

Query: 325 TKLEFLFLFNNFLKGLLHLPDS---KRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMS 381
             L++LFL+ N L G   +P S    + L+ L +S+N+  G +P+   + L  L  L + 
Sbjct: 260 KNLQYLFLYQNKLSG--PIPPSIFSLQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLF 316

Query: 382 QNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPK 441
            N+F G IP ++    RL  L L SN FSGE+PK  L    +L  +++S N   G+I   
Sbjct: 317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN-LGKHNNLTVLDLSTNNLTGEIPEG 375

Query: 442 YMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLM 501
             S   L  L L  N   G + + L    SL  + + +N  SG+LP        +  L +
Sbjct: 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435

Query: 502 SRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSA 561
           S N+L+G ++    ++   ++L ++ NK +G L  SF  S  L +L L  N  +G++P  
Sbjct: 436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRK 494

Query: 562 LFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDI 621
           L   S+LM L L +N+ SG IP  ++    L +L L  N L G IP     +  ++ +D+
Sbjct: 495 LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554

Query: 622 SYNLLDGSIPSCFTNI 637
           S N L G IP    N+
Sbjct: 555 SQNQLSGEIPKNLGNV 570

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  180 bits (457), Expect = 2e-46
 Identities = 159/468 (33%), Positives = 234/468 (50%), Gaps = 27/468 (5%)

Query: 84  NGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVL 143
            GS+  L+ L++  N  S  +   + S +SL  L L GN L VG  P   L NL +LE L
Sbjct: 136 RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL-VGKIPNS-LTNLTSLEFL 193

Query: 144 DLSGNGLIGSLTMQGEKLELL-------NNKCREMNARICELKNLVELNLSWNKLDGSLP 196
            L+ N L+G +  +  +++ L       NN   E+   I  L +L  L+L +N L G +P
Sbjct: 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP 253

Query: 197 QCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLE 256
             L NL  L+ L L  N+LSG +P S+F +L  L  L LS N+  G     ++     LE
Sbjct: 254 SSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIP-ELVIQLQNLE 311

Query: 257 VLQISRLQIETENFPW----LPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNL 312
           +L +      T   P     LPR  L+VL L     SG IP  L    +L  +DLS NNL
Sbjct: 312 ILHLFSNNF-TGKIPVALTSLPR--LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368

Query: 313 AGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSK---RDLLHLVISNNNFIGMLPDNFG 369
            G  P  L  ++  L  L LF+N L+G   +P S    R L  + + +N+F G LP  F 
Sbjct: 369 TGEIPEGLC-SSGNLFKLILFSNSLEG--EIPKSLGACRSLRRVRLQDNSFSGELPSEF- 424

Query: 370 MILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNV 429
             LP + +LD+S N+ +G I         L  L L+ N F G LP  F  G   L  +++
Sbjct: 425 TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF--GSKRLENLDL 482

Query: 430 SHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHW 489
           S N F G +  K  S+++L  L L++N+ +G + + L +   L  LD+S+N LSGQ+P  
Sbjct: 483 SRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542

Query: 490 VGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFS 537
                 L  L +S+N L G++   L N++    ++IS N L+G L  +
Sbjct: 543 FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  126 bits (318), Expect = 1e-29
 Identities = 108/335 (32%), Positives = 154/335 (45%), Gaps = 55/335 (16%)

Query: 467 LNAPSLHILDVSNNMLSGQLPHWVG----NFSNLDVLLMSRNSLEGDVSVPLSNLQVARI 522
           +N P  ++   SN   S  +  W G    N S +  + +S  ++ G +S  +  L   + 
Sbjct: 41  INDPLKYL---SNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQT 97

Query: 523 LDISENKLYGPLEFS-FNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGN 581
           +++S N+L GP+    F  SSSL +L L NN+  GSIP        L TLDL +N  SG 
Sbjct: 98  INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI--PNLETLDLSNNMLSGE 155

Query: 582 IPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWM 641
           IP  I   S+L+ L L GN L G IP  L +L  +  + ++ N L G IP          
Sbjct: 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR--------- 206

Query: 642 EEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESY 701
           E G             ++    I   YN+      SGE   E+                 
Sbjct: 207 ELGQ------------MKSLKWIYLGYNN-----LSGEIPYEI----------------- 232

Query: 702 KGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMD 761
             G L  +  LDL  N LTG IPS++G L+ L  L L  N LSG IP S  +L+ + S+D
Sbjct: 233 --GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290

Query: 762 LSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTP 796
           LS N L G+IP  + +L  L I ++  N+ +G  P
Sbjct: 291 LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  121 bits (304), Expect = 7e-28
 Identities = 135/517 (26%), Positives = 212/517 (41%), Gaps = 118/517 (22%)

Query: 329 FLFLFNNF-------LKGLLHLPDSKRDLLHLVISNN------NFIGMLPDNFGMILPEL 375
             FLF NF       L+ LL    S  D L  + + N       + G+  +N   +    
Sbjct: 16  LFFLFLNFSMLHAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRV---- 71

Query: 376 VYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFG 435
           V +D+S  +  G I  ++     +  ++LS+N  SG +P    T   SL ++N+S     
Sbjct: 72  VSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS----- 126

Query: 436 GQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSN 495
                              +N FTG +  G +  P+L  LD+SNNMLSG++P+ +G+FS+
Sbjct: 127 -------------------NNNFTGSIPRGSI--PNLETLDLSNNMLSGEIPNDIGSFSS 165

Query: 496 LDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLN 555
           L                        ++LD                        L  N L 
Sbjct: 166 L------------------------KVLD------------------------LGGNVLV 177

Query: 556 GSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRK 615
           G IP++L   + L  L L  N+  G IP  + +  +L+ + L  NNL G IP ++  L  
Sbjct: 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237

Query: 616 IAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLI 675
           +  +D+ YN L G IPS   N+       +    F++   L     P+I +     ++L 
Sbjct: 238 LNHLDLVYNNLTGPIPSSLGNL------KNLQYLFLYQNKLSGPIPPSIFSLQK-LISLD 290

Query: 676 FSGEDNR------EL---RQRVEVKFMAKNRYE-SYKGGV--LEYMTGLDLSSNELTGEI 723
            S  DN       EL    Q +E+  +  N +       +  L  +  L L SN+ +GEI
Sbjct: 291 LS--DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348

Query: 724 PSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAI 783
           P  +G    L  L+LS N+L+G IP    +   +  + L  N L G+IP  L     L  
Sbjct: 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR 408

Query: 784 FNVSYNDLSGPTPN--TK----QFANFDESNYRGNLN 814
             +  N  SG  P+  TK     F +   +N +G +N
Sbjct: 409 VRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN 445

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 85.6 bits (212), Expect = 4e-17
 Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 8/127 (6%)

Query: 708 YMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKL 767
           ++ GL L +  L G IP+ I  L+ L ++NLS N + G+IP S  ++  +E +DLSYN  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 768 RGQIPLELSELNYLAIFNVSYNDLSGPTPNTK-----QFANFDESNYRGNLNLCGPAVLK 822
            G IP  L +L  L I N++ N LSG  P          A+F   N+  N  LCG   L+
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF---NFTDNAGLCGIPGLR 535

Query: 823 NCSTDLP 829
            C   L 
Sbjct: 536 ACGPHLS 542

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 1e-09
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765
           L ++  ++LS N + G IP ++G +  L  L+LS+N  +GSIP S   L  +  ++L+ N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Query: 766 KLRGQIPLEL-SELNYLAIFNVSYN 789
            L G++P  L   L + A FN + N
Sbjct: 501 SLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.3 bits (141), Expect = 1e-08
 Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 6/106 (5%)

Query: 330 LFLFNNFLKGLLHLPDSKRDLLHLV---ISNNNFIGMLPDNFGMILPELVYLDMSQNSFE 386
           L L N  L+G +  P+    L HL    +S N+  G +P + G I   L  LD+S NSF 
Sbjct: 423 LGLDNQGLRGFI--PNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFN 479

Query: 387 GSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHN 432
           GSIP S+G    L  L+L+ N+ SG +P       +  A  N + N
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.6 bits (134), Expect = 8e-08
 Identities = 28/88 (31%), Positives = 48/88 (54%)

Query: 475 LDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPL 534
           L + N  L G +P+ +    +L  + +S NS+ G++   L ++    +LD+S N   G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 535 EFSFNHSSSLWHLFLHNNSLNGSIPSAL 562
             S    +SL  L L+ NSL+G +P+AL
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 539 NHSSSLWHL---FLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRAL 595
           N  S L HL    L  NS+ G+IP +L   + L  LDL  N F+G+IP  + + ++LR L
Sbjct: 436 NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495

Query: 596 LLRGNNLQGNIPQQL 610
            L GN+L G +P  L
Sbjct: 496 NLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.4 bits (131), Expect = 2e-07
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 19/103 (18%)

Query: 122 NNLGV-GFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKN 180
           +N G+ GF P  +   LR+L+ ++LSGN + G                  +   +  + +
Sbjct: 426 DNQGLRGFIPNDI-SKLRHLQSINLSGNSIRG-----------------NIPPSLGSITS 467

Query: 181 LVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISV 223
           L  L+LS+N  +GS+P+ L  LT LR+L+L  N LSG +P ++
Sbjct: 468 LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 3e-07
 Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 538 FNHSSSLW---HLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRA 594
           F+ +   W    L L N  L G IP+ + +   L +++L  N   GNIPP +   ++L  
Sbjct: 411 FDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV 470

Query: 595 LLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPS 632
           L L  N+  G+IP+ L  L  + I++++ N L G +P+
Sbjct: 471 LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.5 bits (123), Expect = 1e-06
 Identities = 75/263 (28%), Positives = 118/263 (44%), Gaps = 11/263 (4%)

Query: 69  WERIKCNVTTANYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGF 128
              +  N      ++   L  L +L+    S S      L +L  L SL L  N L    
Sbjct: 51  ALNLSSNTLLLLPSSLSRLLSLDLLSPSGIS-SLDGSENLLNLLPLPSLDLNLNRLRSNI 109

Query: 129 KPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELL---NNKCREMNARICELKNLVELN 185
             +  L NL +L++ + +   +   + +    L+ L   +NK   + + +  L NL  L+
Sbjct: 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLD 169

Query: 186 LSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFS 245
           LS+N L   LP+ LSNL+ L  LDL+ N++S +LP      L++LE L LS N+      
Sbjct: 170 LSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLP-PEIELLSALEELDLSNNS--IIEL 224

Query: 246 LSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYI 305
           LS L+N   L  L++S  ++E           L+ L+L    IS +I S      +LR +
Sbjct: 225 LSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS-SISSLGSLT-NLREL 282

Query: 306 DLSHNNLAGTFPTWLLQNNTKLE 328
           DLS N+L+   P   L       
Sbjct: 283 DLSGNSLSNALPLIALLLLLLEL 305

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 25/56 (44%), Positives = 32/56 (57%)

Query: 712 LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKL 767
           LDLS+N LT     A   L  L  L+LS N+L+   P +FS L  + S+DLS N L
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.9 bits (114), Expect = 2e-05
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 184 LNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGS 243
           L L    L G +P  +S L +L+ ++L+ N + GN+P S   ++TSLE L LS N+F GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGS 481

Query: 244 F--SLSVLANHSRL 255
              SL  L +   L
Sbjct: 482 IPESLGQLTSLRIL 495

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 180 NLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNN 239
           NL  L+LS N+L          L  L+VLDL+ N L+  +    F+ L SL  L LSGNN
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTS-ISPEAFSGLPSLRSLDLSGNN 59

Query: 240 F 240
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.4 bits (108), Expect = 7e-05
 Identities = 55/214 (25%), Positives = 81/214 (37%), Gaps = 42/214 (19%)

Query: 85  GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSL---FLEGNNLGVGFKPMK---VLPNLR 138
                L+ L++  N+       +L SL   +SL    L  N LG     +    +     
Sbjct: 78  TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP 137

Query: 139 NLEVLDLSGNGL--------------IGSLTMQGEKLELLNNKCREMNAR-ICE----LK 179
            LE L L  N L                 L    ++L L NN   +   R + E      
Sbjct: 138 ALEKLVLGRNRLEGASCEALAKALRANRDL----KELNLANNGIGDAGIRALAEGLKANC 193

Query: 180 NLVELNLSWNKL----DGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFAN-----LTSL 230
           NL  L+L+ N L      +L + L++L  L VL+L  N L  +   +  A+       SL
Sbjct: 194 NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL-TDAGAAALASALLSPNISL 252

Query: 231 EYLSLSGNNF--QGSFSLS-VLANHSRLEVLQIS 261
             LSLS N+    G+  L+ VLA    L  L + 
Sbjct: 253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLR 286

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 8e-05
 Identities = 20/47 (42%), Positives = 27/47 (57%)

Query: 704 GVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRS 750
           G +  +  LDLS N   G IP ++G L  L  LNL+ N LSG +P +
Sbjct: 463 GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 402 LDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGR 461
           L L +    G +P   ++    L  +N+S N   G I P   S+T L  L L+ N F G 
Sbjct: 423 LGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 462 LEEGLLNAPSLHILDVSNNMLSGQLPHWVG 491
           + E L    SL IL+++ N LSG++P  +G
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.0 bits (104), Expect = 3e-04
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 6/84 (7%)

Query: 472 LHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLY 531
           L  +++S N + G +P  +G+ ++L+VL +S NS  G +   L  L   RIL+++ N L 
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 532 GPLEFSFNHSSSLWHLFLHNNSLN 555
           G +       ++L    LH  S N
Sbjct: 504 GRV------PAALGGRLLHRASFN 521

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 57/242 (23%), Positives = 91/242 (37%), Gaps = 36/242 (14%)

Query: 373 PELVYLDMSQNSFEGSIPPS-------MGYTVRLLFLDLSSNNFSGELPKQF--LTGCVS 423
           P L  L +S N   G IP         +     L  LDLS N    +       L    S
Sbjct: 51  PSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSS 109

Query: 424 LAFMNVSHNYFGGQIFPKY-----MSMTQLAWLYLNDNQFTGRLEEGLLNA----PSLHI 474
           L  + +++N  G +               L  L L  N+  G   E L  A      L  
Sbjct: 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKE 169

Query: 475 LDVSNNMLSGQ----LPHWVGNFSNLDVLLMSRNSLE----GDVSVPLSNLQVARILDIS 526
           L+++NN +       L   +    NL+VL ++ N L       ++  L++L+   +L++ 
Sbjct: 170 LNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLG 229

Query: 527 ENKL--YGPLEFS---FNHSSSLWHLFLHNNSLN----GSIPSALFQSSQLMTLDLRDNE 577
           +N L   G    +    + + SL  L L  N +       +   L +   L+ LDLR N+
Sbjct: 230 DNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289

Query: 578 FS 579
           F 
Sbjct: 290 FG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 78/309 (25%), Positives = 115/309 (37%), Gaps = 60/309 (19%)

Query: 133 VLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLD 192
           +LP L  L+VL L GN L        E  + L      +  +     +L EL LS N+  
Sbjct: 18  LLPKLLCLQVLRLEGNTL------GEEAAKAL---ASALRPQ----PSLKELCLSLNETG 64

Query: 193 ------GSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANL--TSLEYLSLSGNNFQGSF 244
                  SL Q L+    L+ LDL+ N L  +    + + L  +SL+ L L+ NN  G  
Sbjct: 65  RIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLN-NNGLGDR 123

Query: 245 SLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGT----IPSFLQYQY 300
            L +LA     + L+                  L+ L L R  + G     +   L+   
Sbjct: 124 GLRLLA-----KGLKDLPP-------------ALEKLVLGRNRLEGASCEALAKALRANR 165

Query: 301 DLRYIDLSHNNLAGTFPTWLLQ---NNTKLEFLFLFNNFL-----KGLLHLPDSKRDLLH 352
           DL+ ++L++N +       L +    N  LE L L NN L       L     S + L  
Sbjct: 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEV 225

Query: 353 LVISNNNF----IGMLPDNFGMILPELVYLDMSQNSFE----GSIPPSMGYTVRLLFLDL 404
           L + +NN        L          L+ L +S N         +   +     LL LDL
Sbjct: 226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL 285

Query: 405 SSNNFSGEL 413
             N F  E 
Sbjct: 286 RGNKFGEEG 294

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 6e-04
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 277 QLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNN 335
            LK L+L    ++       +   +L+ +DLS NNL  +           L  L L  N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNL-TSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.9 bits (101), Expect = 8e-04
 Identities = 23/75 (30%), Positives = 38/75 (50%)

Query: 436 GQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSN 495
           G I      +  L  + L+ N   G +   L +  SL +LD+S N  +G +P  +G  ++
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 496 LDVLLMSRNSLEGDV 510
           L +L ++ NSL G V
Sbjct: 492 LRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 37/165 (22%), Positives = 58/165 (35%), Gaps = 20/165 (12%)

Query: 458 FTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNF---SNLDVLLMSRNSLEGD----- 509
               L +GL     L  LD+S+N L       + +    S+L  L ++ N L        
Sbjct: 69  GLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL 128

Query: 510 VSVPLSNLQVARILDISENKLYG----PLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQ- 564
                        L +  N+L G     L  +   +  L  L L NN +  +   AL + 
Sbjct: 129 AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188

Query: 565 ---SSQLMTLDLRDNEF----SGNIPPLINEDSNLRALLLRGNNL 602
              +  L  LDL +N      +  +   +    +L  L L  NNL
Sbjct: 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 205 LRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISR 262
           L+ LDL++N+L+  +P   F  L +L+ L LSGNN   S S    +    L  L +S 
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSG 57

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	883
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.75
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
PLN03150	623	hypothetical protein; Provisional	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.62
PLN03150	623	hypothetical protein; Provisional	99.5
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.4
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.23
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.19
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.17
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.05
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.02
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.0
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.97
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.94
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.89
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.84
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.84
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.82
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.81
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.8
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.72
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.7
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.57
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.47
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.4
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.33
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.22
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.11
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.04
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.03
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.0
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.91
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.91
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.88
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.87
PRK15386	426	type III secretion protein GogB; Provisional	97.83
KOG4341	483	consensus F-box protein containing LRR [General fu	97.81
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.76
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.67
PRK15386	426	type III secretion protein GogB; Provisional	97.52
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.38
KOG4341	483	consensus F-box protein containing LRR [General fu	97.35
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.29
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.98
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.94
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.87
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.53
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.91
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.82
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.78
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.67
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.5
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.41
KOG4308	478	consensus LRR-containing protein [Function unknown	92.65
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.15
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.38
KOG4308	478	consensus LRR-containing protein [Function unknown	90.98
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.55
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.17
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.09
smart00370	26	LRR Leucine-rich repeats, outliers.	90.09
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.72
smart00370	26	LRR Leucine-rich repeats, outliers.	86.72
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.6

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.9e-75  Score=723.68  Aligned_cols=585  Identities=33%  Similarity=0.536  Sum_probs=460.2

Q ss_pred             cHHHHHHHHHhhhcCCcCCcccccCCccCCCCCCCCCCCCccceeecCCCCCCCCCCcCCCCCCEEECCCCCCCCCCchh
Q 041908           28 LDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCSWERIKCNVTTANYNNNGSLKQLKILNIGFNSFSESLVPL  107 (883)
Q Consensus        28 ~~~~~~all~~k~~~~~~~~~~~~~~~l~sW~~~~~~~cc~w~gv~C~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  107 (883)
                      .++|++||++||+++.++      .+.+.+| +. ..+||.|.||+|+..          .+++.|||++|.+.+.++..
T Consensus        27 ~~~~~~~l~~~~~~~~~~------~~~~~~w-~~-~~~~c~w~gv~c~~~----------~~v~~L~L~~~~i~~~~~~~   88 (968)
T PLN00113         27 HAEELELLLSFKSSINDP------LKYLSNW-NS-SADVCLWQGITCNNS----------SRVVSIDLSGKNISGKISSA   88 (968)
T ss_pred             CHHHHHHHHHHHHhCCCC------cccCCCC-CC-CCCCCcCcceecCCC----------CcEEEEEecCCCccccCChH
Confidence            568999999999998532      4567899 33 478999999999753          26899999999999999999


Q ss_pred             hcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEcc
Q 041908          108 LTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLS  187 (883)
Q Consensus       108 l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls  187 (883)
                      +..+++|++|+|++|++.+. +|...+.++++|++|+|++|.+.+.+|                   .+.+++|++|+|+
T Consensus        89 ~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p-------------------~~~l~~L~~L~Ls  148 (968)
T PLN00113         89 IFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIP-------------------RGSIPNLETLDLS  148 (968)
T ss_pred             HhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccC-------------------ccccCCCCEEECc
Confidence            99999999999999999876 886556689999999999999988776                   2457888888888


Q ss_pred             CCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcCCCCcEEEccCccccc
Q 041908          188 WNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET  267 (883)
Q Consensus       188 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~  267 (883)
                      +|.+++.+|..++++++|++|++++|.+.+.+| ..++++++|++|++++|.+++.+|                      
T Consensus       149 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p----------------------  205 (968)
T PLN00113        149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP-NSLTNLTSLEFLTLASNQLVGQIP----------------------  205 (968)
T ss_pred             CCcccccCChHHhcCCCCCEEECccCcccccCC-hhhhhCcCCCeeeccCCCCcCcCC----------------------
Confidence            888888888888888888888888888887788 677888888888887777665433                      


Q ss_pred             CCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCC
Q 041908          268 ENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSK  347 (883)
Q Consensus       268 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  347 (883)
                                                ..+..+++|++|++++|.+.+.+|..+. ++++                     
T Consensus       206 --------------------------~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~---------------------  237 (968)
T PLN00113        206 --------------------------RELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTS---------------------  237 (968)
T ss_pred             --------------------------hHHcCcCCccEEECcCCccCCcCChhHh-cCCC---------------------
Confidence                                      3444455555556666655555555432 2222                     


Q ss_pred             CCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEE
Q 041908          348 RDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFM  427 (883)
Q Consensus       348 ~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L  427 (883)
                        |++|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|.            
T Consensus       238 --L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~------------  302 (968)
T PLN00113        238 --LNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE------------  302 (968)
T ss_pred             --CCEEECcCceeccccChhHhC-CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh------------
Confidence              222222223333333444433 55666666666666656666666666666666666655555444            


Q ss_pred             EccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCC
Q 041908          428 NVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLE  507 (883)
Q Consensus       428 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  507 (883)
                                   .+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|+++
T Consensus       303 -------------~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~  369 (968)
T PLN00113        303 -------------LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT  369 (968)
T ss_pred             -------------hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence                         4445556666666666666666666666777777777777777777777777777777777777777


Q ss_pred             CCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCcccc
Q 041908          508 GDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLIN  587 (883)
Q Consensus       508 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~  587 (883)
                      +.+|..++.+++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+..++.|+.|++++|++++.+|..+.
T Consensus       370 ~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  449 (968)
T PLN00113        370 GEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW  449 (968)
T ss_pred             eeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc
Confidence            77777777777778888888888777777777888888888888888888888888888888899999888888888888


Q ss_pred             CCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhh
Q 041908          588 EDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAY  667 (883)
Q Consensus       588 ~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  667 (883)
                      .+++|+.|++++|++.|.+|..+ ..++|+.||+++|++++.+|..+.+                               
T Consensus       450 ~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~-------------------------------  497 (968)
T PLN00113        450 DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS-------------------------------  497 (968)
T ss_pred             cCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhh-------------------------------
Confidence            88899999999999988888765 4588999999999999888876533                               


Q ss_pred             ccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCC
Q 041908          668 YNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSI  747 (883)
Q Consensus       668 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i  747 (883)
                                                            ++.|+.|||++|+++|.+|..++++++|++|+|++|.++|.+
T Consensus       498 --------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  539 (968)
T PLN00113        498 --------------------------------------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI  539 (968)
T ss_pred             --------------------------------------hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC
Confidence                                                  457889999999999999999999999999999999999999


Q ss_pred             CccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCCCccCCCCCCcccCCCcCCCCCC
Q 041908          748 PRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPA  819 (883)
Q Consensus       748 p~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~~  819 (883)
                      |..++++++|+.|||++|+++|.+|..+.++++|+.+++++|+++|.+|..++|.+|.+.+|.||+++||.+
T Consensus       540 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             ChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.6e-60  Score=589.97  Aligned_cols=516  Identities=32%  Similarity=0.534  Sum_probs=461.4

Q ss_pred             CCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcCCCCcEE
Q 041908          179 KNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVL  258 (883)
Q Consensus       179 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L  258 (883)
                      .+++.|+|++|.+++.+|..+..+++|++|+|++|+++|.+|...+.++++|++|++++|.++|.+|..   .++     
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~---~l~-----  140 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG---SIP-----  140 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc---ccC-----
Confidence            478899999999999999999999999999999999998999666679999999999999998877632   222     


Q ss_pred             EccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEccccccc
Q 041908          259 QISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLK  338 (883)
Q Consensus       259 ~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~  338 (883)
                                        +|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+. ++++|+          
T Consensus       141 ------------------~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~----------  191 (968)
T PLN00113        141 ------------------NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLE----------  191 (968)
T ss_pred             ------------------CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh-hCcCCC----------
Confidence                              466677777777778888889999999999999998888887664 455444          


Q ss_pred             ccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHh
Q 041908          339 GLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFL  418 (883)
Q Consensus       339 ~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~  418 (883)
                                   +|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..+ 
T Consensus       192 -------------~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-  256 (968)
T PLN00113        192 -------------FLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-  256 (968)
T ss_pred             -------------eeeccCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH-
Confidence                         5555555556677777765 8899999999999988899889999999999999999988888765 


Q ss_pred             hCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCE
Q 041908          419 TGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDV  498 (883)
Q Consensus       419 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~  498 (883)
                      ..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus       257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  336 (968)
T PLN00113        257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV  336 (968)
T ss_pred             hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCE
Confidence            68899999999999999888989999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcC
Q 041908          499 LLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEF  578 (883)
Q Consensus       499 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l  578 (883)
                      |++++|.+++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++
T Consensus       337 L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l  416 (968)
T PLN00113        337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF  416 (968)
T ss_pred             EECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCccccccccc
Q 041908          579 SGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVV  658 (883)
Q Consensus       579 ~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  658 (883)
                      ++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+.                       
T Consensus       417 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-----------------------  473 (968)
T PLN00113        417 SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-----------------------  473 (968)
T ss_pred             eeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-----------------------
Confidence            999999999999999999999999999999999999999999999999988876431                       


Q ss_pred             ccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeC
Q 041908          659 EHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNL  738 (883)
Q Consensus       659 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~L  738 (883)
                                                                     .++|+.|||++|+++|.+|..++++++|+.|+|
T Consensus       474 -----------------------------------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L  506 (968)
T PLN00113        474 -----------------------------------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKL  506 (968)
T ss_pred             -----------------------------------------------cccceEEECcCCccCCccChhhhhhhccCEEEC
Confidence                                                           246788999999999999999999999999999


Q ss_pred             CCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCCC-ccCCCCCCcccCCCcCCC
Q 041908          739 SHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNT-KQFANFDESNYRGNLNLC  816 (883)
Q Consensus       739 s~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~-~~~~~~~~~~~~gn~~lc  816 (883)
                      ++|++++.+|..++++++|++|||++|+++|.+|..+.++++|+.||+++|+++|.+|.. ..+..+....+.+|+..+
T Consensus       507 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        507 SENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             cCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            999999999999999999999999999999999999999999999999999999999975 344445555667777554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.6e-42  Score=347.26  Aligned_cols=480  Identities=27%  Similarity=0.377  Sum_probs=321.6

Q ss_pred             hcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcCCC
Q 041908          175 ICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSR  254 (883)
Q Consensus       175 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~  254 (883)
                      ...-..|+.|.+++|.+. .+.+.+.++..|.+|++++|+++ ++| .+++.+..++.|+.++|+++ .+|. ..+.+.+
T Consensus        41 wW~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp-~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~  115 (565)
T KOG0472|consen   41 WWEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLP-AAIGELEALKSLNVSHNKLS-ELPE-QIGSLIS  115 (565)
T ss_pred             hhhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCC-HHHHHHHHHHHhhcccchHh-hccH-HHhhhhh
Confidence            444556778888888877 45556778888888888888888 777 67888888888888888876 4553 3444444


Q ss_pred             CcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEccc
Q 041908          255 LEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFN  334 (883)
Q Consensus       255 L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~  334 (883)
                      |..++.+.|                       .+. .+|+.++.+..|+.++..+|+++ +.|..++ ++.+|..+++.+
T Consensus       116 l~~l~~s~n-----------------------~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~-~~~~l~~l~~~~  169 (565)
T KOG0472|consen  116 LVKLDCSSN-----------------------ELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMV-NLSKLSKLDLEG  169 (565)
T ss_pred             hhhhhcccc-----------------------cee-ecCchHHHHhhhhhhhccccccc-cCchHHH-HHHHHHHhhccc
Confidence            444444333                       332 35566777778888888888887 6777665 666666666666


Q ss_pred             ccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccc
Q 041908          335 NFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELP  414 (883)
Q Consensus       335 n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip  414 (883)
                      |+++..++....+                         +.|++||...|-++ .+|+.++.+.+|+-|++..|++. .+|
T Consensus       170 n~l~~l~~~~i~m-------------------------~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP  222 (565)
T KOG0472|consen  170 NKLKALPENHIAM-------------------------KRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP  222 (565)
T ss_pred             cchhhCCHHHHHH-------------------------HHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC
Confidence            6665543322234                         44455554444443 44444555555555555555554 444


Q ss_pred             hhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCC
Q 041908          415 KQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFS  494 (883)
Q Consensus       415 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~  494 (883)
                      .  |.+|..|+++.++.|++.-...+....++++..||+++|++. ..|+.+.-+.+|++||+|+|.++ .+|..++++ 
T Consensus       223 e--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-  297 (565)
T KOG0472|consen  223 E--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-  297 (565)
T ss_pred             C--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-
Confidence            2  244455555555555444322222235556666666666665 55666666667777777777776 456667776 


Q ss_pred             CCCEEECCCCcCCCCCCccccCCC--cccEEe-------cCCCc---------CcCccccccccCCCcCeeecccCcccc
Q 041908          495 NLDVLLMSRNSLEGDVSVPLSNLQ--VARILD-------ISENK---------LYGPLEFSFNHSSSLWHLFLHNNSLNG  556 (883)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~-------Ls~n~---------l~~~~~~~~~~~~~L~~L~L~~n~l~~  556 (883)
                      .|+.|.+.||.+...-.+.+..-+  -|++|.       ++.-.         ..+..| ......+.+.|++++-+++ 
T Consensus       298 hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~-~~~~~i~tkiL~~s~~qlt-  375 (565)
T KOG0472|consen  298 HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFP-DIYAIITTKILDVSDKQLT-  375 (565)
T ss_pred             eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCccc-chhhhhhhhhhcccccccc-
Confidence            677777777765421111111000  011110       11100         011111 1234557889999999998 


Q ss_pred             ccchhhhcCCC---CCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcc
Q 041908          557 SIPSALFQSSQ---LMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSC  633 (883)
Q Consensus       557 ~~p~~~~~~~~---L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  633 (883)
                      .+|...+....   ...++++.|++. ++|..+..+..+.+.-+..|+..+-+|..++.+++|..|++++|.+. .+|..
T Consensus       376 ~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e  453 (565)
T KOG0472|consen  376 LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEE  453 (565)
T ss_pred             cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchh
Confidence            77887766555   889999999998 78888877777665555555555589999999999999999998774 55654


Q ss_pred             cccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEE
Q 041908          634 FTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLD  713 (883)
Q Consensus       634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  713 (883)
                      ++.                                                                     +..|+.||
T Consensus       454 ~~~---------------------------------------------------------------------lv~Lq~Ln  464 (565)
T KOG0472|consen  454 MGS---------------------------------------------------------------------LVRLQTLN  464 (565)
T ss_pred             hhh---------------------------------------------------------------------hhhhheec
Confidence            432                                                                     34588999


Q ss_pred             ccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCc
Q 041908          714 LSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLS  792 (883)
Q Consensus       714 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~  792 (883)
                      +|+|+|. .+|..+..+..|+.+-.++|++....|+.+++|.+|..|||.+|.+. .||+.++++++|+.|++++|+|+
T Consensus       465 lS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  465 LSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            9999998 99999999999998888889999777777999999999999999998 79999999999999999999999

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2e-40  Score=333.71  Aligned_cols=477  Identities=28%  Similarity=0.360  Sum_probs=356.3

Q ss_pred             CCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccc
Q 041908           89 QLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKC  168 (883)
Q Consensus        89 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~  168 (883)
                      .++.+++++|.+.. +.+.+.++..|++|++++|++..  .| .+++.+..++.|+.++|++.                 
T Consensus        46 ~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~~--lp-~aig~l~~l~~l~vs~n~ls-----------------  104 (565)
T KOG0472|consen   46 DLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLSQ--LP-AAIGELEALKSLNVSHNKLS-----------------  104 (565)
T ss_pred             chhhhhhccCchhh-ccHhhhcccceeEEEeccchhhh--CC-HHHHHHHHHHHhhcccchHh-----------------
Confidence            46778899988754 56678889999999999999876  77 48889999999998888773                 


Q ss_pred             cchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHh
Q 041908          169 REMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSV  248 (883)
Q Consensus       169 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~  248 (883)
                       .+|..++.+.+|+.|+.++|.+. .+|+.++.+..|..++..+|+++ ++| +.++++.+|..|++.+|++. ..|+..
T Consensus       105 -~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp-~~~~~~~~l~~l~~~~n~l~-~l~~~~  179 (565)
T KOG0472|consen  105 -ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLP-EDMVNLSKLSKLDLEGNKLK-ALPENH  179 (565)
T ss_pred             -hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCc-hHHHHHHHHHHhhccccchh-hCCHHH
Confidence             34478888999999999999988 68888999999999999999998 888 77888999999999999988 566565


Q ss_pred             hhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCc
Q 041908          249 LANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLE  328 (883)
Q Consensus       249 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~  328 (883)
                      +. ++.|++|+...|.++..++....+.+|+.|++..|++. ..| .|..|..|+++.++.|.+. .+|.....+++++ 
T Consensus       180 i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l-  254 (565)
T KOG0472|consen  180 IA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSL-  254 (565)
T ss_pred             HH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccc-
Confidence            55 88888888777776665555555555555555555554 233 4555555555555555555 5555555444444 


Q ss_pred             EEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCc
Q 041908          329 FLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNN  408 (883)
Q Consensus       329 ~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  408 (883)
                                            .+||+.+|++. ..|+.+.. +.+|++||+++|.++ ..|..++++ .|+.|.+.+|.
T Consensus       255 ----------------------~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  255 ----------------------LVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             ----------------------eeeeccccccc-cCchHHHH-hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCc
Confidence                                  44555555544 45676654 778889999999888 677788888 88999999998


Q ss_pred             ccCccchhHhhCCCC--CCEE-------EccCccc--------CCcCcccccCCCCCCeEEccCcccCccccccccCC--
Q 041908          409 FSGELPKQFLTGCVS--LAFM-------NVSHNYF--------GGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNA--  469 (883)
Q Consensus       409 l~~~ip~~~~~~l~~--L~~L-------~Ls~n~l--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--  469 (883)
                      +. +|-..+..+-+.  |++|       .++...-        .....+....+.+.+.|++++-+++....+.|..-  
T Consensus       309 lr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~  387 (565)
T KOG0472|consen  309 LR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKS  387 (565)
T ss_pred             hH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhh
Confidence            86 554443321110  1111       1111100        01112223345678889999988885444444322  


Q ss_pred             CCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeec
Q 041908          470 PSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFL  549 (883)
Q Consensus       470 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L  549 (883)
                      .-.+..+++.|++. .+|..+..+..+.+.-+..|+..+.+|..++.+++|..|++++|.+. .+|..++.+..|+.|++
T Consensus       388 ~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~Lnl  465 (565)
T KOG0472|consen  388 EIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNL  465 (565)
T ss_pred             cceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecc
Confidence            23788999999998 78888877777665444444555688999999999999999998774 57778888889999999


Q ss_pred             ccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCC
Q 041908          550 HNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLD  627 (883)
Q Consensus       550 ~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~  627 (883)
                      +.|+|. .+|..+..+..++.+-.++|++....|+.+.++.+|..|+|.+|.+. .+|..++++.+|++|++.+|+|.
T Consensus       466 S~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  466 SFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            999998 88999888888999999999999777777999999999999999998 78999999999999999999997

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-36  Score=318.76  Aligned_cols=364  Identities=24%  Similarity=0.216  Sum_probs=201.7

Q ss_pred             CEEeccCCcCccccChHhhhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCC
Q 041908          231 EYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHN  310 (883)
Q Consensus       231 ~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  310 (883)
                      +.|++++|++. .+....|.++++|+.+++.+|.++..+.-.....+|+.|+|.+|.|+..-.+.+..++.|+.||||.|
T Consensus        81 ~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN  159 (873)
T KOG4194|consen   81 QTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN  159 (873)
T ss_pred             eeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence            33455555444 34444445555555555555554444333344446788888888888777788888888999999998


Q ss_pred             CCcCCcchHHHhcCCCCcEEEcccccccccccC-CCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCC
Q 041908          311 NLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHL-PDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSI  389 (883)
Q Consensus       311 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~  389 (883)
                      .++ .+|..-+..-.++++|+|++|.++.+... ...+.+|.+|.|+.|.++. +|.-.++.+++|+.|+|..|++.-.-
T Consensus       160 ~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~~L~~LdLnrN~irive  237 (873)
T KOG4194|consen  160 LIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLPKLESLDLNRNRIRIVE  237 (873)
T ss_pred             hhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc-cCHHHhhhcchhhhhhccccceeeeh
Confidence            888 67765554456677777777777665322 1244455555555555543 33333333555666666555554222


Q ss_pred             CccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCC
Q 041908          390 PPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNA  469 (883)
Q Consensus       390 p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  469 (883)
                      -..|.++++|+.|.+..|+++ .+.+..|.++.++++|+|+.|++...-...+.+++.|+.|++++|.|...-++++..+
T Consensus       238 ~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft  316 (873)
T KOG4194|consen  238 GLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT  316 (873)
T ss_pred             hhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence            334555555555555555555 4444445555555555555555555444445555555555555555555555555555


Q ss_pred             CCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCcccc---ccccCCCcCe
Q 041908          470 PSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEF---SFNHSSSLWH  546 (883)
Q Consensus       470 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~---~~~~~~~L~~  546 (883)
                      ++|++|+|++|.++..-+..|..+..|++|.|++|+++..--..|..+.+|+.|||++|.++..+..   .|.++++|++
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk  396 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK  396 (873)
T ss_pred             ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence            5555555555555554455555555555555555555543334445555555555555555443322   3444555555


Q ss_pred             eecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccC
Q 041908          547 LFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRG  599 (883)
Q Consensus       547 L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  599 (883)
                      |++.+|++...--.+|..+..|+.|||.+|.|-..-|..|..+ .|++|.+..
T Consensus       397 L~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  397 LRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             eeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            5555555553223345555555555555555555555555554 555555443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-36  Score=318.23  Aligned_cols=375  Identities=23%  Similarity=0.221  Sum_probs=309.2

Q ss_pred             CccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEE
Q 041908          349 DLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMN  428 (883)
Q Consensus       349 ~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~  428 (883)
                      .-+.|++++|.+...-+..|.. +++|+++++.+|.++ .+|...+...+|+.|+|.+|.|+ ++..+-+..++.|+.||
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~n-l~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYN-LPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLD  155 (873)
T ss_pred             ceeeeeccccccccCcHHHHhc-CCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhh
Confidence            4456777777777666666654 889999999999888 77876666667999999999888 66666667888899999


Q ss_pred             ccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCC
Q 041908          429 VSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEG  508 (883)
Q Consensus       429 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~  508 (883)
                      ||.|.++.+..+.|..-.++++|+|++|+|+..-...|..+.+|..|.|+.|.++...+..|.+++.|+.|+|..|+|.-
T Consensus       156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri  235 (873)
T KOG4194|consen  156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI  235 (873)
T ss_pred             hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence            99998888777777777789999999999988877888888899999999999986666777889999999999998875


Q ss_pred             CCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccC
Q 041908          509 DVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINE  588 (883)
Q Consensus       509 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~  588 (883)
                      .--..|.++++|+.|.+..|.+.......|..+.++++|+|+.|+++..-..++.+++.|+.|+||+|.|...-++.+.-
T Consensus       236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf  315 (873)
T KOG4194|consen  236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF  315 (873)
T ss_pred             ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence            44566888899999999999998888888888899999999999988777778889999999999999998888888888


Q ss_pred             CCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhc
Q 041908          589 DSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYY  668 (883)
Q Consensus       589 l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  668 (883)
                      +++|++|+|++|+++..-++.|..+..|+.|+|++|++...--..|                                  
T Consensus       316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af----------------------------------  361 (873)
T KOG4194|consen  316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF----------------------------------  361 (873)
T ss_pred             cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH----------------------------------
Confidence            8999999999999987778888889999999999998752111110                                  


Q ss_pred             cccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcc---cccccccCCeeeCCCCcCCc
Q 041908          669 NSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPS---AIGYLQELHALNLSHNHLSG  745 (883)
Q Consensus       669 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~---~l~~l~~L~~L~Ls~N~l~g  745 (883)
                                                         ..+++|.+|||++|.|++.|-+   .|.+|+.|+.|+|-+|++..
T Consensus       362 -----------------------------------~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~  406 (873)
T KOG4194|consen  362 -----------------------------------VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS  406 (873)
T ss_pred             -----------------------------------HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee
Confidence                                               1257888999999999887764   47789999999999999997


Q ss_pred             CCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCC
Q 041908          746 SIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTP  796 (883)
Q Consensus       746 ~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip  796 (883)
                      +....|..+..||.|||.+|.|..+-|.+|..+ .|+.|-+..-.+-|-+-
T Consensus       407 I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCq  456 (873)
T KOG4194|consen  407 IPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQ  456 (873)
T ss_pred             cchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEecc
Confidence            777889999999999999999998899999988 88888887777666443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=6e-36  Score=331.19  Aligned_cols=463  Identities=27%  Similarity=0.309  Sum_probs=240.1

Q ss_pred             CCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhccccc
Q 041908           90 LKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCR  169 (883)
Q Consensus        90 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~  169 (883)
                      ++.|++..|.+-....+.+.+.-+|+.||+++|.+..  .| ..+..+.+|+.|+++.|.+.                  
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~--fp-~~it~l~~L~~ln~s~n~i~------------------   81 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISS--FP-IQITLLSHLRQLNLSRNYIR------------------   81 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeecccccccc--CC-chhhhHHHHhhcccchhhHh------------------
Confidence            5555666555444334444444446666666666544  44 34555666666666655542                  


Q ss_pred             chhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhh
Q 041908          170 EMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVL  249 (883)
Q Consensus       170 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l  249 (883)
                      ..|.+..++.+|++|.|.+|.+. ..|..+..+++|++||++.|.+. .+| ..+..++.++.+..++|...     ..+
T Consensus        82 ~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~P-l~i~~lt~~~~~~~s~N~~~-----~~l  153 (1081)
T KOG0618|consen   82 SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIP-LVIEVLTAEEELAASNNEKI-----QRL  153 (1081)
T ss_pred             hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCc-hhHHhhhHHHHHhhhcchhh-----hhh
Confidence            23355666666666666666665 56666666666666666666666 666 55666666666666666211     011


Q ss_pred             hcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcE
Q 041908          250 ANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEF  329 (883)
Q Consensus       250 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~  329 (883)
                      +..                        .++.+++..|.+.+.++..+..+.+  .|||++|.+. ...   ..++.+|+.
T Consensus       154 g~~------------------------~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~  203 (1081)
T KOG0618|consen  154 GQT------------------------SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEV  203 (1081)
T ss_pred             ccc------------------------cchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhh
Confidence            111                        1444555555555555555555544  5666666554 111   124555666


Q ss_pred             EEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcc
Q 041908          330 LFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNF  409 (883)
Q Consensus       330 L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  409 (883)
                      +....|++..+.   ...++++.|+.+.|.+....+.-.   ..+|++++++.|+++ .+|.+++.+.+|+.++...|++
T Consensus       204 l~c~rn~ls~l~---~~g~~l~~L~a~~n~l~~~~~~p~---p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l  276 (1081)
T KOG0618|consen  204 LHCERNQLSELE---ISGPSLTALYADHNPLTTLDVHPV---PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRL  276 (1081)
T ss_pred             hhhhhcccceEE---ecCcchheeeeccCcceeeccccc---cccceeeecchhhhh-cchHHHHhcccceEecccchhH
Confidence            666665554432   234555666666666553222211   345666666666665 4456666666666666666666


Q ss_pred             cCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCC-CCEEEccCCccCCCcch
Q 041908          410 SGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPS-LHILDVSNNMLSGQLPH  488 (883)
Q Consensus       410 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~ls~n~l~~~~p~  488 (883)
                      + .+|..++ ...+|+.|.+.+|.+.. +|+....+++|++|+|..|++....+..+..... |+.|+.+.|++.. .|.
T Consensus       277 ~-~lp~ri~-~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~  352 (1081)
T KOG0618|consen  277 V-ALPLRIS-RITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST-LPS  352 (1081)
T ss_pred             H-hhHHHHh-hhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc-ccc
Confidence            4 5555543 45556666666665543 3344445566666666666665333322222222 4444444444442 221


Q ss_pred             -hhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCC
Q 041908          489 -WVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQ  567 (883)
Q Consensus       489 -~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~  567 (883)
                       .=...+.|+.|++.+|.++...-..+.+.++|++|+|++|++.......+.++..|++|+|++|+++ .+|..+.++..
T Consensus       353 ~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~  431 (1081)
T KOG0618|consen  353 YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGR  431 (1081)
T ss_pred             ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhh
Confidence             1112344555555555555544444555555555555555554333334455555555555555555 45555555555


Q ss_pred             CCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCc
Q 041908          568 LMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNL  625 (883)
Q Consensus       568 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~  625 (883)
                      |++|...+|++. .+| .+..++.|+.+|++.|+++...-..-...++|++||+++|.
T Consensus       432 L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  432 LHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            555555555555 344 44555555555555555542221111112455555555554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=2e-35  Score=327.05  Aligned_cols=482  Identities=28%  Similarity=0.383  Sum_probs=325.0

Q ss_pred             EEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcCCCCcEEEccC
Q 041908          183 ELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISR  262 (883)
Q Consensus       183 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~  262 (883)
                      .+|++.+.+. .+|..+-.-..++.|+++.|.+- ..|.+.+.+.-+|+.|++++|++. .+|. .+..+..|+.|.++.
T Consensus         2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s~   77 (1081)
T KOG0618|consen    2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLSR   77 (1081)
T ss_pred             CcccccccCc-ccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccc-cCCc-hhhhHHHHhhcccch
Confidence            3566777766 67766665555888888888766 556556666666888888888776 5553 456667777777777


Q ss_pred             cccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEccccccccccc
Q 041908          263 LQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLH  342 (883)
Q Consensus       263 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~  342 (883)
                      |.+...+........|+++.|.+|.+. ..|..+..+.+|++||++.|++. .+|..+. .++.++.+..++|       
T Consensus        78 n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~-~lt~~~~~~~s~N-------  147 (1081)
T KOG0618|consen   78 NYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIE-VLTAEEELAASNN-------  147 (1081)
T ss_pred             hhHhhCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHH-hhhHHHHHhhhcc-------
Confidence            776666555555566666666666655 45666666666666666666665 5555543 4555555555554       


Q ss_pred             CCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCC
Q 041908          343 LPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCV  422 (883)
Q Consensus       343 ~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~  422 (883)
                                      .....++.      ..++.+++..|.+.+.++..+..++.  .|||.+|.+. ...   ...+.
T Consensus       148 ----------------~~~~~lg~------~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~  199 (1081)
T KOG0618|consen  148 ----------------EKIQRLGQ------TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLA  199 (1081)
T ss_pred             ----------------hhhhhhcc------ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhcc
Confidence                            11111111      12555666666666666555555544  5666666654 221   24556


Q ss_pred             CCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECC
Q 041908          423 SLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMS  502 (883)
Q Consensus       423 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~  502 (883)
                      +|+.+....|++....    -.-++|+.|+.++|.++...+.  ....+|+++++++|+++ .+|++++.+.+|+.++..
T Consensus       200 ~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n  272 (1081)
T KOG0618|consen  200 NLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNAN  272 (1081)
T ss_pred             chhhhhhhhcccceEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEeccc
Confidence            6666666666654321    1345677777777777633222  12357888888888887 566888888888888888


Q ss_pred             CCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcC-C-CCCEEeccCCcCCc
Q 041908          503 RNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS-S-QLMTLDLRDNEFSG  580 (883)
Q Consensus       503 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~-~-~L~~L~Ls~N~l~~  580 (883)
                      +|+++ .+|..+...++|+.|++..|.+.- +|....+.++|++|+|..|++. .+|+.+..- . .|+.|..+.|++..
T Consensus       273 ~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~  349 (1081)
T KOG0618|consen  273 HNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLST  349 (1081)
T ss_pred             chhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccc
Confidence            88884 667777778888888888888754 3445566778888888888886 566654432 2 36777778887773


Q ss_pred             cCCcc-ccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccc
Q 041908          581 NIPPL-INEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVE  659 (883)
Q Consensus       581 ~~p~~-l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  659 (883)
                       .|.. =...+.|+.|++.+|.++...-+.+.+.++|++|+|++|++. .+|+..-                        
T Consensus       350 -lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~------------------------  403 (1081)
T KOG0618|consen  350 -LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKL------------------------  403 (1081)
T ss_pred             -cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHH------------------------
Confidence             3321 133567888899999998887778888888999999999885 4554221                        


Q ss_pred             cccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCC
Q 041908          660 HFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLS  739 (883)
Q Consensus       660 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls  739 (883)
                                                                  ..++.|++|+||+|+++ .+|.++..+..|++|..-
T Consensus       404 --------------------------------------------~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ah  438 (1081)
T KOG0618|consen  404 --------------------------------------------RKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAH  438 (1081)
T ss_pred             --------------------------------------------hchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhc
Confidence                                                        11456788899999998 888888889999999999


Q ss_pred             CCcCCcCCCccccCcCCCCEEECCCCccccc-CCccccCCCCCcEEEccCCc
Q 041908          740 HNHLSGSIPRSFSNLKMIESMDLSYNKLRGQ-IPLELSELNYLAIFNVSYND  790 (883)
Q Consensus       740 ~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~-ip~~l~~l~~L~~l~ls~N~  790 (883)
                      +|++. ..| ++..+++|+.+|+|.|+|+-. +|..+. -++|++||+++|.
T Consensus       439 sN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  439 SNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT  487 (1081)
T ss_pred             CCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence            99888 566 788899999999999998743 343333 2788999999886

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=4.7e-33  Score=293.92  Aligned_cols=326  Identities=26%  Similarity=0.350  Sum_probs=239.5

Q ss_pred             CCCCcEEeCCCCcCC-CCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCe
Q 041908          372 LPELVYLDMSQNSFE-GSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAW  450 (883)
Q Consensus       372 l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  450 (883)
                      +|.|+.+.+..|++. .-+|..+..+..|+.||||+|++. +.|..                         +..-.++-.
T Consensus        77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~-------------------------LE~AKn~iV  130 (1255)
T KOG0444|consen   77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTN-------------------------LEYAKNSIV  130 (1255)
T ss_pred             chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchh-------------------------hhhhcCcEE
Confidence            556666666666554 234555555555666666666555 45544                         344455556


Q ss_pred             EEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcC
Q 041908          451 LYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKL  530 (883)
Q Consensus       451 L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  530 (883)
                      |+|++|+|..+....|.+++.|-+||+|+|++. .+|+.+..+..|++|+|++|.+.-.--..+..+++|++|.+++.+-
T Consensus       131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR  209 (1255)
T KOG0444|consen  131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR  209 (1255)
T ss_pred             EEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence            666666666444445566777777777777776 6666777788888888888876543333455677888888887754


Q ss_pred             c-CccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchh
Q 041908          531 Y-GPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQ  609 (883)
Q Consensus       531 ~-~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~  609 (883)
                      + ..+|.++..+.+|..+|++.|.+. .+|+.+.++++|+.|+||+|+|+ .+....+...+|++|+++.|+++ .+|+.
T Consensus       210 Tl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~a  286 (1255)
T KOG0444|consen  210 TLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDA  286 (1255)
T ss_pred             hhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHH
Confidence            4 467888999999999999999998 78999999999999999999999 45566677789999999999999 89999


Q ss_pred             hcCCCCCCEEEcCCCcCCCC-CCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhccee
Q 041908          610 LCHLRKIAIVDISYNLLDGS-IPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRV  688 (883)
Q Consensus       610 l~~l~~L~~L~ls~N~l~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  688 (883)
                      ++.++.|+.|.+.+|+++-. ||+.+++                                                    
T Consensus       287 vcKL~kL~kLy~n~NkL~FeGiPSGIGK----------------------------------------------------  314 (1255)
T KOG0444|consen  287 VCKLTKLTKLYANNNKLTFEGIPSGIGK----------------------------------------------------  314 (1255)
T ss_pred             HhhhHHHHHHHhccCcccccCCccchhh----------------------------------------------------
Confidence            99999999999999988632 4544433                                                    


Q ss_pred             EEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCccc
Q 041908          689 EVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLR  768 (883)
Q Consensus       689 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Ls  768 (883)
                                       +..|+.+..++|.+. .+|+.+..+..|+.|+|++|++. ..|+.+.-|+.|+.|||..|.--
T Consensus       315 -----------------L~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  315 -----------------LIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             -----------------hhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence                             456777888999998 99999999999999999999998 88999999999999999999644


Q ss_pred             ccCCccccCCCCCcEEEccCC-----cCcccCCCC
Q 041908          769 GQIPLELSELNYLAIFNVSYN-----DLSGPTPNT  798 (883)
Q Consensus       769 g~ip~~l~~l~~L~~l~ls~N-----~l~g~ip~~  798 (883)
                      -..|.-=..-++|+.-|+.+-     ++.|..|.+
T Consensus       376 VMPPKP~da~~~lefYNIDFSLq~QlrlAG~~pas  410 (1255)
T KOG0444|consen  376 VMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMPAS  410 (1255)
T ss_pred             cCCCCcchhhhcceeeecceehhhHHhhccCCccc
Confidence            222321111245665444432     467766643

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=7.7e-33  Score=292.30  Aligned_cols=364  Identities=23%  Similarity=0.323  Sum_probs=311.6

Q ss_pred             CCccEEEccCCccc-cccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCE
Q 041908          348 RDLLHLVISNNNFI-GMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAF  426 (883)
Q Consensus       348 ~~L~~L~ls~n~l~-~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~  426 (883)
                      +-.+-.|+++|.++ +.+|..... +++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+ ..++.|+.
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LRs   82 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLRS   82 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhHH
Confidence            33456788888888 578888866 899999999999987 89999999999999999999987 555444 57899999


Q ss_pred             EEccCcccCC-cCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCc
Q 041908          427 MNVSHNYFGG-QIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNS  505 (883)
Q Consensus       427 L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~  505 (883)
                      +++.+|++.. -+|+.+..+..|..|||++|+++ ..|..+...+++-+|++|+|+|..+....|.+++.|-+|||++|+
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence            9999998853 37888889999999999999998 778888889999999999999984444556789999999999999


Q ss_pred             CCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccc-cccchhhhcCCCCCEEeccCCcCCccCCc
Q 041908          506 LEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLN-GSIPSALFQSSQLMTLDLRDNEFSGNIPP  584 (883)
Q Consensus       506 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~  584 (883)
                      +. .+|..+..+..|++|+|++|.+.-.--..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|+|.|.+. ..|+
T Consensus       162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe  239 (1255)
T KOG0444|consen  162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE  239 (1255)
T ss_pred             hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence            98 56667899999999999999886544445566788899999987744 358999999999999999999998 7899


Q ss_pred             cccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccch
Q 041908          585 LINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAI  664 (883)
Q Consensus       585 ~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  664 (883)
                      .+-++.+|+.|+|++|+|+ .+........+|++|++|.|+++ .+|+++.+                            
T Consensus       240 cly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK----------------------------  289 (1255)
T KOG0444|consen  240 CLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK----------------------------  289 (1255)
T ss_pred             HHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh----------------------------
Confidence            9999999999999999998 55666677788999999999997 56766544                            


Q ss_pred             hhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCc-ccCcccccccccCCeeeCCCCcC
Q 041908          665 SAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELT-GEIPSAIGYLQELHALNLSHNHL  743 (883)
Q Consensus       665 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l  743 (883)
                                                               ++.|+.|++.+|+++ .-||..||.|.+|+++..++|.+
T Consensus       290 -----------------------------------------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L  328 (1255)
T KOG0444|consen  290 -----------------------------------------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL  328 (1255)
T ss_pred             -----------------------------------------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence                                                     456777888899886 36899999999999999999999


Q ss_pred             CcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcC
Q 041908          744 SGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDL  791 (883)
Q Consensus       744 ~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l  791 (883)
                      . ..|+.+.....|+.|.|++|+|. ..|.++--|+-|++||+..|+=
T Consensus       329 E-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  329 E-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             c-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence            8 89999999999999999999998 6899999999999999999953

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=1.3e-27  Score=241.59  Aligned_cols=410  Identities=20%  Similarity=0.197  Sum_probs=229.2

Q ss_pred             CCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccC-CcccCccchhHhhCCCCCCE
Q 041908          348 RDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSS-NNFSGELPKQFLTGCVSLAF  426 (883)
Q Consensus       348 ~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~ip~~~~~~l~~L~~  426 (883)
                      +..++++|..|+++. +|+..++.+++|+.|||++|+|+..-|..|.++.+|..|-+.+ |+|+ .+|...|.++.+++.
T Consensus        67 ~~tveirLdqN~I~~-iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   67 PETVEIRLDQNQISS-IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR  144 (498)
T ss_pred             CcceEEEeccCCccc-CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH
Confidence            355678888888874 4444444589999999999999988899999999988887777 8887 899999999999999


Q ss_pred             EEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCC------------CcchhhhCCC
Q 041908          427 MNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSG------------QLPHWVGNFS  494 (883)
Q Consensus       427 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~------------~~p~~~~~l~  494 (883)
                      |.+.-|++.......|..++++..|.+.+|.+.......|..+.+++.+.+..|.+..            ..|..++...
T Consensus       145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence            9999999998888889999999999999999885555578888889999988887421            1222233322


Q ss_pred             CCCEEECCCCcCCCCCCccccC-CCcccEEecCCCcCcCccc-cccccCCCcCeeecccCccccccchhhhcCCCCCEEe
Q 041908          495 NLDVLLMSRNSLEGDVSVPLSN-LQVARILDISENKLYGPLE-FSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLD  572 (883)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~  572 (883)
                      ...-..+.+.++..+-+..|.. ...+..--.+.+...+.-| ..|..+++|++|+|++|++++.-+.+|.....+++|.
T Consensus       225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~  304 (498)
T KOG4237|consen  225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY  304 (498)
T ss_pred             ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence            2222223333332222221111 1111111111222222222 2355555566666666665555555555555566666


Q ss_pred             ccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCC----CC-
Q 041908          573 LRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGD----PF-  647 (883)
Q Consensus       573 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~----~~-  647 (883)
                      |..|++...-...|.++..|+.|+|.+|+|+..-|..|..+.+|..|++-.|++...---.+  +..|+....    +- 
T Consensus       305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~w--l~~Wlr~~~~~~~~~C  382 (498)
T KOG4237|consen  305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAW--LGEWLRKKSVVGNPRC  382 (498)
T ss_pred             cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHH--HHHHHhhCCCCCCCCC
Confidence            66665554444455555566666666666655555555555566666655555532211110  001111111    00 


Q ss_pred             --CCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcc
Q 041908          648 --NGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPS  725 (883)
Q Consensus       648 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~  725 (883)
                        .+.+......--.+++......+..........+.......+++..++.....++.++....+++++.+|.++ .+|.
T Consensus       383 q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~-~vp~  461 (498)
T KOG4237|consen  383 QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT-SVPD  461 (498)
T ss_pred             CCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhc-ccCH
Confidence              0000000000000011111111111111111122222233444445555555666666666666777777776 6665


Q ss_pred             cccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCC
Q 041908          726 AIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN  765 (883)
Q Consensus       726 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N  765 (883)
                      +  .+.+| .+|||+|+++..--..|.++++|.+|-||+|
T Consensus       462 ~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  462 E--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             H--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            5  45555 6666666666555555666666666666554

>PLN03210 Resistant to P

Probab=99.90  E-value=1.6e-22  Score=252.48  Aligned_cols=249  Identities=19%  Similarity=0.226  Sum_probs=134.1

Q ss_pred             CCCCcEEeCCCCc------CCCCCCccccccC-cccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccC
Q 041908          372 LPELVYLDMSQNS------FEGSIPPSMGYTV-RLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMS  444 (883)
Q Consensus       372 l~~L~~L~L~~n~------l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  444 (883)
                      +++|+.|.+..+.      +...+|..+..++ +|+.|++.++.+. .+|..+  ...+|+.|++.+|++.. ++..+..
T Consensus       557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~-L~~~~~~  632 (1153)
T PLN03210        557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK-LWDGVHS  632 (1153)
T ss_pred             CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc-ccccccc
Confidence            5566666554432      1223444444433 4666666666554 555543  34566666666665542 3444455


Q ss_pred             CCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEe
Q 041908          445 MTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILD  524 (883)
Q Consensus       445 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  524 (883)
                      +++|+.|+++++...+.+|. +..+++|+.|++++|.....+|..++.+++|+.|++++|..-+.+|..+ ++++|+.|+
T Consensus       633 l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~  710 (1153)
T PLN03210        633 LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN  710 (1153)
T ss_pred             CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence            66666666666544444443 4555666666666665555566666666666666666654444555443 556666666


Q ss_pred             cCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCC-------ccCCccccCCCCCcEEEc
Q 041908          525 ISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFS-------GNIPPLINEDSNLRALLL  597 (883)
Q Consensus       525 Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~-------~~~p~~l~~l~~L~~L~L  597 (883)
                      +++|...+.+|..   ..+|+.|++++|.++ .+|..+ .+++|+.|++.++...       ...|......++|+.|++
T Consensus       711 Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~L  785 (1153)
T PLN03210        711 LSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFL  785 (1153)
T ss_pred             CCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeC
Confidence            6666544444432   245666666666654 455443 3555666665553211       111111222355666666


Q ss_pred             cCCcccccCchhhcCCCCCCEEEcCCCcCCCCCC
Q 041908          598 RGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIP  631 (883)
Q Consensus       598 ~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p  631 (883)
                      ++|...+.+|.+++++++|+.|++++|...+.+|
T Consensus       786 s~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP  819 (1153)
T PLN03210        786 SDIPSLVELPSSIQNLHKLEHLEIENCINLETLP  819 (1153)
T ss_pred             CCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence            6666655666666666666666666654433444

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.90  E-value=2.3e-22  Score=251.15  Aligned_cols=317  Identities=21%  Similarity=0.212  Sum_probs=206.8

Q ss_pred             cchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCccccc
Q 041908          364 LPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYM  443 (883)
Q Consensus       364 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  443 (883)
                      +|..+....++|+.|++.++.+. .+|..+ ...+|+.|++.+|++. .++..+ ..+++|+.|+++++.....+| .+.
T Consensus       580 lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls  654 (1153)
T PLN03210        580 LPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIP-DLS  654 (1153)
T ss_pred             cCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCC-ccc
Confidence            44444332234666666666554 445444 3456666666666654 444443 455666666666554333333 355


Q ss_pred             CCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEE
Q 041908          444 SMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARIL  523 (883)
Q Consensus       444 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  523 (883)
                      .+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|..   ..+|+.|
T Consensus       655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L  730 (1153)
T PLN03210        655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWL  730 (1153)
T ss_pred             cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCee
Confidence            56666666666665555666666666666677766665444555544 5666777777666554444432   3456667


Q ss_pred             ecCCCcCcCccccccccCCCcCeeecccCcc-------ccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEE
Q 041908          524 DISENKLYGPLEFSFNHSSSLWHLFLHNNSL-------NGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALL  596 (883)
Q Consensus       524 ~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l-------~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  596 (883)
                      ++++|.+. .+|..+ .+++|++|.+.++..       ....|.....+++|+.|++++|...+.+|.+++++++|+.|+
T Consensus       731 ~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~  808 (1153)
T PLN03210        731 DLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE  808 (1153)
T ss_pred             ecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEE
Confidence            77776654 334333 355666666655321       111122233457889999999988888898899999999999


Q ss_pred             ccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccc
Q 041908          597 LRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIF  676 (883)
Q Consensus       597 L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  676 (883)
                      +++|...+.+|..+ .+++|+.|++++|.....+|..                                           
T Consensus       809 Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~-------------------------------------------  844 (1153)
T PLN03210        809 IENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI-------------------------------------------  844 (1153)
T ss_pred             CCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-------------------------------------------
Confidence            99887666788766 7889999999987654333321                                           


Q ss_pred             cCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCC-CcCCcCCCccccCcC
Q 041908          677 SGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSH-NHLSGSIPRSFSNLK  755 (883)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~-N~l~g~ip~~l~~l~  755 (883)
                                                   .++++.|+|++|.++ .+|.+++.+++|+.|+|++ |++. .+|..+..++
T Consensus       845 -----------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~  893 (1153)
T PLN03210        845 -----------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLK  893 (1153)
T ss_pred             -----------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCccccccc
Confidence                                         246788999999998 7898999999999999988 5566 5777888999


Q ss_pred             CCCEEECCCCc
Q 041908          756 MIESMDLSYNK  766 (883)
Q Consensus       756 ~L~~LdLs~N~  766 (883)
                      .|+.|+++++.
T Consensus       894 ~L~~L~l~~C~  904 (1153)
T PLN03210        894 HLETVDFSDCG  904 (1153)
T ss_pred             CCCeeecCCCc
Confidence            99999999874

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=5.8e-22  Score=228.93  Aligned_cols=267  Identities=27%  Similarity=0.337  Sum_probs=153.3

Q ss_pred             CCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEE
Q 041908          373 PELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLY  452 (883)
Q Consensus       373 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  452 (883)
                      ..-..|+++.+.++ .+|..+.  ++|+.|++++|+++ .+|.    ..++|++|++++|+++.                
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lts----------------  256 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS----------------  256 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCc----------------
Confidence            34567788888777 5666554  36777777777776 4553    23445555555554443                


Q ss_pred             ccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcC
Q 041908          453 LNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYG  532 (883)
Q Consensus       453 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  532 (883)
                               +|..   .++|+.|++++|.++ .+|..   ..+|+.|++++|+++. +|.   ..++|+.|++++|++++
T Consensus       257 ---------LP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~  316 (788)
T PRK15387        257 ---------LPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS  316 (788)
T ss_pred             ---------ccCc---ccccceeeccCCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc
Confidence                     2211   234555555555554 23332   1345555666665553 232   12456666666666654


Q ss_pred             ccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcC
Q 041908          533 PLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCH  612 (883)
Q Consensus       533 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~  612 (883)
                      . |..   ..+|+.|++++|+++ .+|..   ..+|+.|+|++|++++ +|..   ..+|+.|++++|+++ .+|..   
T Consensus       317 L-p~l---p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---  380 (788)
T PRK15387        317 L-PAL---PSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---  380 (788)
T ss_pred             C-CCC---cccccccccccCccc-ccccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---
Confidence            2 221   224566666666665 34431   1467777777777773 4443   245666777777776 35543   


Q ss_pred             CCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEE
Q 041908          613 LRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKF  692 (883)
Q Consensus       613 l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  692 (883)
                      ..+|+.|++++|++++ +|..                                                           
T Consensus       381 ~~~L~~LdLs~N~Lt~-LP~l-----------------------------------------------------------  400 (788)
T PRK15387        381 PSGLKELIVSGNRLTS-LPVL-----------------------------------------------------------  400 (788)
T ss_pred             ccccceEEecCCcccC-CCCc-----------------------------------------------------------
Confidence            2456677777776653 3321                                                           


Q ss_pred             eeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCC
Q 041908          693 MAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIP  772 (883)
Q Consensus       693 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip  772 (883)
                                   .+.|+.||+|+|+|+ .+|...   .+|+.|+|++|+|+ .+|..+.++++|+.|||++|+|+|.+|
T Consensus       401 -------------~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~  462 (788)
T PRK15387        401 -------------PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  462 (788)
T ss_pred             -------------ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence                         124566777777776 456432   34666777777776 567777777777777777777777766


Q ss_pred             ccccC
Q 041908          773 LELSE  777 (883)
Q Consensus       773 ~~l~~  777 (883)
                      ..+..
T Consensus       463 ~~L~~  467 (788)
T PRK15387        463 QALRE  467 (788)
T ss_pred             HHHHH
Confidence            66533

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=2.9e-21  Score=223.23  Aligned_cols=269  Identities=26%  Similarity=0.342  Sum_probs=179.4

Q ss_pred             CCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEE
Q 041908          348 RDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFM  427 (883)
Q Consensus       348 ~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L  427 (883)
                      ..-..|+++.+.++ .+|..+.   ++|+.|++.+|+++ .+|..   .++|++|++++|+++ .+|.    ..++|+.|
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L  267 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPV----LPPGLLEL  267 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccC----ccccccee
Confidence            34568999999997 6888774   58999999999998 56653   589999999999998 6774    24677888


Q ss_pred             EccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCC
Q 041908          428 NVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLE  507 (883)
Q Consensus       428 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  507 (883)
                      ++++|.+... |.   ..++|+.|++++|+++. +|..   .++|+.|++++|.+++ +|..   ..+|+.|++++|+++
T Consensus       268 ~Ls~N~L~~L-p~---lp~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~  335 (788)
T PRK15387        268 SIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT  335 (788)
T ss_pred             eccCCchhhh-hh---chhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc
Confidence            8888877642 22   12456666666666663 3321   3456666666666653 3321   123445555555554


Q ss_pred             CCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCcccc
Q 041908          508 GDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLIN  587 (883)
Q Consensus       508 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~  587 (883)
                      + +|.                           ...+|+.|+|++|+++ .+|..   ..+|+.|++++|++++ +|..  
T Consensus       336 ~-LP~---------------------------lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l--  380 (788)
T PRK15387        336 S-LPT---------------------------LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL--  380 (788)
T ss_pred             c-ccc---------------------------cccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc--
Confidence            2 221                           1124555555555555 34432   2356666777777663 5543  


Q ss_pred             CCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhh
Q 041908          588 EDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAY  667 (883)
Q Consensus       588 ~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  667 (883)
                       ..+|+.|++++|++++ +|..   .++|+.|++++|++++ +|..                                  
T Consensus       381 -~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l----------------------------------  420 (788)
T PRK15387        381 -PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML----------------------------------  420 (788)
T ss_pred             -ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc----------------------------------
Confidence             2457777778777773 5543   3568888888888863 4431                                  


Q ss_pred             ccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCC
Q 041908          668 YNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSI  747 (883)
Q Consensus       668 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i  747 (883)
                                                            +..|+.|+|++|+|+ .+|..+++++.|+.|+|++|.|+|.+
T Consensus       421 --------------------------------------~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~  461 (788)
T PRK15387        421 --------------------------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT  461 (788)
T ss_pred             --------------------------------------hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchH
Confidence                                                  123567999999998 88999999999999999999999998


Q ss_pred             CccccCcC
Q 041908          748 PRSFSNLK  755 (883)
Q Consensus       748 p~~l~~l~  755 (883)
                      |..+..+.
T Consensus       462 ~~~L~~l~  469 (788)
T PRK15387        462 LQALREIT  469 (788)
T ss_pred             HHHHHHHh
Confidence            88875543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.85  E-value=4.7e-23  Score=208.69  Aligned_cols=298  Identities=20%  Similarity=0.168  Sum_probs=181.2

Q ss_pred             cchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccC-CcCccccChH
Q 041908          169 REMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSG-NNFQGSFSLS  247 (883)
Q Consensus       169 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~-n~l~g~~~~~  247 (883)
                      .++|..+.  +.-++++|..|+|+...|.+|+.+++|+.|||++|+|+ .|..++|.++++|..|-+.+ |+|+ .+|..
T Consensus        59 ~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~  134 (498)
T KOG4237|consen   59 TEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKIT-DLPKG  134 (498)
T ss_pred             ccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchh-hhhhh
Confidence            34444332  35577888888888777778888888888888888888 55558888888877776666 7777 67777


Q ss_pred             hhhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCC
Q 041908          248 VLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKL  327 (883)
Q Consensus       248 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L  327 (883)
                      .|+++..|+.|.+                       .-|++.-...+.|..+++|..|.+.+|.+. .++...+..+..+
T Consensus       135 ~F~gL~slqrLll-----------------------Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i  190 (498)
T KOG4237|consen  135 AFGGLSSLQRLLL-----------------------NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAI  190 (498)
T ss_pred             HhhhHHHHHHHhc-----------------------ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhcc
Confidence            7777776665544                       444455556778888889999999988887 7777666678888


Q ss_pred             cEEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCcccccc-CcccEEeccC
Q 041908          328 EFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYT-VRLLFLDLSS  406 (883)
Q Consensus       328 ~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~  406 (883)
                      +.+.+..|.+...-..+    .+.. ++      ...|..++. .....-..+.+.++...-+..|... ..+..=-.+.
T Consensus       191 ~tlhlA~np~icdCnL~----wla~-~~------a~~~ietsg-arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~  258 (498)
T KOG4237|consen  191 KTLHLAQNPFICDCNLP----WLAD-DL------AMNPIETSG-ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSE  258 (498)
T ss_pred             chHhhhcCccccccccc----hhhh-HH------hhchhhccc-ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccc
Confidence            88888777643221111    1100 00      011111111 1222222222333322222222111 1111111222


Q ss_pred             CcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCc
Q 041908          407 NNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQL  486 (883)
Q Consensus       407 n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~  486 (883)
                      +...+..|...|.++++|+.|++++|+++++-+..|.....+++|+|..|++...-...|.++..|+.|+|.+|+|+...
T Consensus       259 d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~  338 (498)
T KOG4237|consen  259 DFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA  338 (498)
T ss_pred             cCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe
Confidence            33334556666667777777777777777766666777777777777777766555556666777777777777777666


Q ss_pred             chhhhCCCCCCEEECCCCcC
Q 041908          487 PHWVGNFSNLDVLLMSRNSL  506 (883)
Q Consensus       487 p~~~~~l~~L~~L~L~~n~l  506 (883)
                      |.+|..+..|.+|.+-.|.+
T Consensus       339 ~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  339 PGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             cccccccceeeeeehccCcc
Confidence            77777777777777666654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=5.7e-20  Score=214.21  Aligned_cols=247  Identities=23%  Similarity=0.346  Sum_probs=154.0

Q ss_pred             CCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEEC
Q 041908          422 VSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLM  501 (883)
Q Consensus       422 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L  501 (883)
                      .+...|+++++.++. +|..+  .+.|+.|++++|+++. +|..+.  ++|++|++++|.++ .+|..+.  .+|+.|++
T Consensus       178 ~~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLTT-IPACI--PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            346778888877774 34433  2467888888888774 444432  47888888888777 4565443  46777888


Q ss_pred             CCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCcc
Q 041908          502 SRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGN  581 (883)
Q Consensus       502 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~  581 (883)
                      ++|.+. .+|..+.  .+|+.|++++|++.. +|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|+++. 
T Consensus       249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-  318 (754)
T PRK15370        249 SINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-  318 (754)
T ss_pred             cCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-
Confidence            888776 4555443  467777777777763 454332  36777777777776 3554432  357777777777763 


Q ss_pred             CCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccc
Q 041908          582 IPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHF  661 (883)
Q Consensus       582 ~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  661 (883)
                      +|..+.  ++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+                           
T Consensus       319 LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l---------------------------  365 (754)
T PRK15370        319 LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL---------------------------  365 (754)
T ss_pred             CCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh---------------------------
Confidence            444332  567777777777764 565543  56777777777665 233211                           


Q ss_pred             cchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCC
Q 041908          662 PAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHN  741 (883)
Q Consensus       662 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N  741 (883)
                                                                  .+.|+.|||++|+|+ .+|..+.  ..|+.|++++|
T Consensus       366 --------------------------------------------p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N  398 (754)
T PRK15370        366 --------------------------------------------PPTITTLDVSRNALT-NLPENLP--AALQIMQASRN  398 (754)
T ss_pred             --------------------------------------------cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccC
Confidence                                                        134566777777777 4555544  25677777777


Q ss_pred             cCCcCCCccc----cCcCCCCEEECCCCccc
Q 041908          742 HLSGSIPRSF----SNLKMIESMDLSYNKLR  768 (883)
Q Consensus       742 ~l~g~ip~~l----~~l~~L~~LdLs~N~Ls  768 (883)
                      +|+ .+|..+    +.++.+..|++.+|.++
T Consensus       399 ~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        399 NLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             Ccc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            776 444433    33466677777777766

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=1.2e-19  Score=211.45  Aligned_cols=203  Identities=23%  Similarity=0.302  Sum_probs=110.8

Q ss_pred             CCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEE
Q 041908          373 PELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLY  452 (883)
Q Consensus       373 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  452 (883)
                      .+...|+++++.++ .+|..+.  +.|+.|++++|+++ .+|..++   .+|+.|++++|+++. +|..+  .++|+.|+
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~  247 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATL--PDTIQEME  247 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhh--hccccEEE
Confidence            45788999999888 5676553  57899999999998 7887653   478888888887764 34333  23566677


Q ss_pred             ccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcC
Q 041908          453 LNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYG  532 (883)
Q Consensus       453 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  532 (883)
                      +++|++. .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|+++.
T Consensus       248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA  318 (754)
T ss_pred             CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc
Confidence            7766666 3444432  35666666666665 3454332  356666666665553 232221  244555555555543


Q ss_pred             ccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCccc
Q 041908          533 PLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQ  603 (883)
Q Consensus       533 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  603 (883)
                       +|..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+.  ++|++|++++|+++
T Consensus       319 -LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt  380 (754)
T PRK15370        319 -LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT  380 (754)
T ss_pred             -CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC
Confidence             22111  1344444444444442 333332  34444444444444 2333221  33444444444444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.76  E-value=7.3e-20  Score=199.13  Aligned_cols=181  Identities=24%  Similarity=0.235  Sum_probs=83.9

Q ss_pred             EEEccCcccCC-cCcccccCCCCCCeEEccCcccCcc----ccccccCCCCCCEEEccCCccCC------CcchhhhCCC
Q 041908          426 FMNVSHNYFGG-QIFPKYMSMTQLAWLYLNDNQFTGR----LEEGLLNAPSLHILDVSNNMLSG------QLPHWVGNFS  494 (883)
Q Consensus       426 ~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~------~~p~~~~~l~  494 (883)
                      .|+|..+.+++ .....+..+..|++++++++.++..    ++..+...+.+++++++++.+.+      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            35566666652 2333344455566666666665432    33344445556666666655541      1223344455


Q ss_pred             CCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCcccc----ccchhhhcC-CCCC
Q 041908          495 NLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNG----SIPSALFQS-SQLM  569 (883)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~----~~p~~~~~~-~~L~  569 (883)
                      +|++|++++|.+.+..+..+..+..                    . ++|++|++++|++++    .+...+..+ ++|+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~--------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~  140 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLR--------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE  140 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhc--------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCce
Confidence            5555555555554333333322222                    0 124444444444431    122233333 4555


Q ss_pred             EEeccCCcCCcc----CCccccCCCCCcEEEccCCccccc----CchhhcCCCCCCEEEcCCCcCC
Q 041908          570 TLDLRDNEFSGN----IPPLINEDSNLRALLLRGNNLQGN----IPQQLCHLRKIAIVDISYNLLD  627 (883)
Q Consensus       570 ~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~g~----~p~~l~~l~~L~~L~ls~N~l~  627 (883)
                      .|++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+..+++|+.|++++|.++
T Consensus       141 ~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             EEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence            555555555522    222334444555555555555521    2223334445556666555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.75  E-value=2e-19  Score=195.69  Aligned_cols=208  Identities=22%  Similarity=0.290  Sum_probs=135.0

Q ss_pred             EEeccCCcccCccchhHhhCCCCCCEEEccCcccCCc----CcccccCCCCCCeEEccCcccCc------cccccccCCC
Q 041908          401 FLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQ----IFPKYMSMTQLAWLYLNDNQFTG------RLEEGLLNAP  470 (883)
Q Consensus       401 ~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~  470 (883)
                      .|+|..+.+++.--..++..+.+|+.++++++.++..    ++..+...+.+++++++++.+.+      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            5788888887544445567788899999999998653    44456677889999999998872      3445677789


Q ss_pred             CCCEEEccCCccCCCcchhhhCCCC---CCEEECCCCcCCCC----CCccccCC-CcccEEecCCCcCcCccccccccCC
Q 041908          471 SLHILDVSNNMLSGQLPHWVGNFSN---LDVLLMSRNSLEGD----VSVPLSNL-QVARILDISENKLYGPLEFSFNHSS  542 (883)
Q Consensus       471 ~L~~L~ls~n~l~~~~p~~~~~l~~---L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~  542 (883)
                      +|+.|++++|.+.+..+..+..+..   |++|++++|++++.    +...+..+ ++|+.|++++|.+++....      
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~------  155 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE------  155 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH------
Confidence            9999999999998777777766655   88888888887632    22233344 5555566655555432111      


Q ss_pred             CcCeeecccCccccccchhhhcCCCCCEEeccCCcCCcc----CCccccCCCCCcEEEccCCccccc----CchhhcCCC
Q 041908          543 SLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGN----IPPLINEDSNLRALLLRGNNLQGN----IPQQLCHLR  614 (883)
Q Consensus       543 ~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~g~----~p~~l~~l~  614 (883)
                                    .++..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+..++
T Consensus       156 --------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~  221 (319)
T cd00116         156 --------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK  221 (319)
T ss_pred             --------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence                          1233344455566666666665532    222334445666666666666532    233455566


Q ss_pred             CCCEEEcCCCcCCC
Q 041908          615 KIAIVDISYNLLDG  628 (883)
Q Consensus       615 ~L~~L~ls~N~l~~  628 (883)
                      +|+.|++++|++++
T Consensus       222 ~L~~L~ls~n~l~~  235 (319)
T cd00116         222 SLEVLNLGDNNLTD  235 (319)
T ss_pred             CCCEEecCCCcCch
Confidence            77777777776653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=6.4e-19  Score=158.51  Aligned_cols=182  Identities=25%  Similarity=0.480  Sum_probs=154.5

Q ss_pred             cCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEE
Q 041908          540 HSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIV  619 (883)
Q Consensus       540 ~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L  619 (883)
                      .+...+.|.|++|+++ .+|+.+..+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            4457788889999998 78888999999999999999998 68889999999999999999988 789999999999999


Q ss_pred             EcCCCcCCCC-CCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccc
Q 041908          620 DISYNLLDGS-IPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRY  698 (883)
Q Consensus       620 ~ls~N~l~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  698 (883)
                      |+++|++... +|..|..                                                              
T Consensus       108 dltynnl~e~~lpgnff~--------------------------------------------------------------  125 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFY--------------------------------------------------------------  125 (264)
T ss_pred             hccccccccccCCcchhH--------------------------------------------------------------
Confidence            9999988642 3443321                                                              


Q ss_pred             ccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCC
Q 041908          699 ESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSEL  778 (883)
Q Consensus       699 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l  778 (883)
                             ++.|..|+|+.|.+. .+|..++.+++|+.|.+..|.+- ..|.+++.+++|+.|.+.+|+++ .+|++++++
T Consensus       126 -------m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  126 -------MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL  195 (264)
T ss_pred             -------HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence                   356677999999998 89999999999999999999998 78999999999999999999998 788888876


Q ss_pred             CCC---cEEEccCCcCcccCC
Q 041908          779 NYL---AIFNVSYNDLSGPTP  796 (883)
Q Consensus       779 ~~L---~~l~ls~N~l~g~ip  796 (883)
                      .-.   +.+.+.+|++.-+|.
T Consensus       196 ~l~~~k~v~r~E~NPwv~pIa  216 (264)
T KOG0617|consen  196 DLVGNKQVMRMEENPWVNPIA  216 (264)
T ss_pred             hhhhhHHHHhhhhCCCCChHH
Confidence            533   456777888876654

>PLN03150 hypothetical protein; Provisional

Probab=99.64  E-value=2.9e-16  Score=183.20  Aligned_cols=118  Identities=37%  Similarity=0.664  Sum_probs=106.4

Q ss_pred             cccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEcc
Q 041908          708 YMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVS  787 (883)
Q Consensus       708 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls  787 (883)
                      .++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+.++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCCc--cCCCCCCcccCCCcCCCCCCCCCCCC
Q 041908          788 YNDLSGPTPNTK--QFANFDESNYRGNLNLCGPAVLKNCS  825 (883)
Q Consensus       788 ~N~l~g~ip~~~--~~~~~~~~~~~gn~~lc~~~~~~~c~  825 (883)
                      +|+++|.+|..-  .+.......+.||+++||.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999752  22233455789999999987666774

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.62  E-value=1.5e-17  Score=149.83  Aligned_cols=164  Identities=27%  Similarity=0.466  Sum_probs=130.6

Q ss_pred             CCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEE
Q 041908          444 SMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARIL  523 (883)
Q Consensus       444 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  523 (883)
                      +++..+.|.+++|+++ .+|..+..+.+|+.|++++|++. .+|..++.++.|+.|+++-|++. ..|..|+.++.|++|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            4566677777777777 45556777788888888888887 67777888888888888888776 677888888888888


Q ss_pred             ecCCCcCcC-ccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcc
Q 041908          524 DISENKLYG-PLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNL  602 (883)
Q Consensus       524 ~Ls~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l  602 (883)
                      |+.+|++.. ..|..|..++.|+.|+|++|.+. .+|..++++++|+.|.+..|.+. .+|..++.++.|++|++.+|++
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence            888887764 56777777888888888888887 78888888899999999888887 6888888888899999999988


Q ss_pred             cccCchhhcCC
Q 041908          603 QGNIPQQLCHL  613 (883)
Q Consensus       603 ~g~~p~~l~~l  613 (883)
                      + .+|..++++
T Consensus       186 ~-vlppel~~l  195 (264)
T KOG0617|consen  186 T-VLPPELANL  195 (264)
T ss_pred             e-ecChhhhhh
Confidence            8 677766654

>PLN03150 hypothetical protein; Provisional

Probab=99.50  E-value=1e-13  Score=161.80  Aligned_cols=155  Identities=25%  Similarity=0.347  Sum_probs=105.5

Q ss_pred             CCcHHHHHHHHHhhhcCCcCCcccccCCccCCCCCCCCCCCC----ccceeecCCCCCCCCCCcCCCCCCEEECCCCCCC
Q 041908           26 SCLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCC----SWERIKCNVTTANYNNNGSLKQLKILNIGFNSFS  101 (883)
Q Consensus        26 ~c~~~~~~all~~k~~~~~~~~~~~~~~~l~sW~~~~~~~cc----~w~gv~C~~~~~~~~~l~~l~~L~~L~Ls~n~l~  101 (883)
                      .+.++|.+||+++|+.+..+      .  ..+|.   +..||    .|.||.|......     ....++.|+|++|.+.
T Consensus       368 ~t~~~~~~aL~~~k~~~~~~------~--~~~W~---g~~C~p~~~~w~Gv~C~~~~~~-----~~~~v~~L~L~~n~L~  431 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGLP------L--RFGWN---GDPCVPQQHPWSGADCQFDSTK-----GKWFIDGLGLDNQGLR  431 (623)
T ss_pred             ccCchHHHHHHHHHHhcCCc------c--cCCCC---CCCCCCcccccccceeeccCCC-----CceEEEEEECCCCCcc
Confidence            45678999999999988432      1  24793   23443    7999999632110     0124778888888888


Q ss_pred             CCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccchhhhhcCCCCC
Q 041908          102 ESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNL  181 (883)
Q Consensus       102 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L  181 (883)
                      +.+|+.++.+++|++|+|++|.+.+. +| ..++.+++|++|||++|.+.|.+|                 ..++++++|
T Consensus       432 g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP-~~~~~l~~L~~LdLs~N~lsg~iP-----------------~~l~~L~~L  492 (623)
T PLN03150        432 GFIPNDISKLRHLQSINLSGNSIRGN-IP-PSLGSITSLEVLDLSYNSFNGSIP-----------------ESLGQLTSL  492 (623)
T ss_pred             ccCCHHHhCCCCCCEEECCCCcccCc-CC-hHHhCCCCCCEEECCCCCCCCCCc-----------------hHHhcCCCC
Confidence            88888888888888888888887775 66 466777777777777777776666                 666666677


Q ss_pred             CEEEccCCcCCCCCCccccCC-CCCCEEEccCCcc
Q 041908          182 VELNLSWNKLDGSLPQCLSNL-TYLRVLDLTSNQL  215 (883)
Q Consensus       182 ~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l  215 (883)
                      ++|+|++|+++|.+|..++.+ .++..+++.+|..
T Consensus       493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence            777777777666666666542 3455666666543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.40  E-value=1.5e-14  Score=153.92  Aligned_cols=176  Identities=30%  Similarity=0.498  Sum_probs=144.4

Q ss_pred             CCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEE
Q 041908          541 SSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVD  620 (883)
Q Consensus       541 ~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~  620 (883)
                      +..-...|++.|++. ++|..+..+..|+.+.|..|.+. .+|..+.++..|++|+|+.|+++ .+|..+|.|+ |+.|-
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            344456788888887 78888888888888888888887 78888888889999999999988 7888888887 88888


Q ss_pred             cCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccccc
Q 041908          621 ISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYES  700 (883)
Q Consensus       621 ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  700 (883)
                      +++|+++ .+|..++                                                                 
T Consensus       150 ~sNNkl~-~lp~~ig-----------------------------------------------------------------  163 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIG-----------------------------------------------------------------  163 (722)
T ss_pred             EecCccc-cCCcccc-----------------------------------------------------------------
Confidence            8988886 4444332                                                                 


Q ss_pred             ccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCC
Q 041908          701 YKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNY  780 (883)
Q Consensus       701 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~  780 (883)
                          .+..|..||.|.|++. .+|..++++.+|+.|++.+|++. ..|.++..|+ |..||+|+|+++ .||..|.+|+.
T Consensus       164 ----~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~  235 (722)
T KOG0532|consen  164 ----LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRH  235 (722)
T ss_pred             ----cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhh
Confidence                1356677899999988 88888999999999999999998 5677777665 778999999998 78999999999


Q ss_pred             CcEEEccCCcCccc
Q 041908          781 LAIFNVSYNDLSGP  794 (883)
Q Consensus       781 L~~l~ls~N~l~g~  794 (883)
                      |++|-|.+|+|.-+
T Consensus       236 Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  236 LQVLQLENNPLQSP  249 (722)
T ss_pred             heeeeeccCCCCCC
Confidence            99999999998864

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.23  E-value=4.1e-13  Score=143.21  Aligned_cols=189  Identities=21%  Similarity=0.323  Sum_probs=122.2

Q ss_pred             EECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcC
Q 041908          499 LLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEF  578 (883)
Q Consensus       499 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l  578 (883)
                      .+++.|++. ++|..++.+..|+.+.+..|.+ ..+|..+..+..|+.++|+.|+++ .+|..++.++ |+.|-+++|++
T Consensus        80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl  155 (722)
T KOG0532|consen   80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL  155 (722)
T ss_pred             hhccccccc-cCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcc
Confidence            344444443 3444444444444444444444 234445555555666666666665 5666666664 77888888887


Q ss_pred             CccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCccccccccc
Q 041908          579 SGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVV  658 (883)
Q Consensus       579 ~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  658 (883)
                      + .+|..++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+..+                     
T Consensus       156 ~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L---------------------  211 (722)
T KOG0532|consen  156 T-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL---------------------  211 (722)
T ss_pred             c-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC---------------------
Confidence            7 67777777778888888888877 67778888888888888887775 233322211                     


Q ss_pred             ccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeC
Q 041908          659 EHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNL  738 (883)
Q Consensus       659 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~L  738 (883)
                                                                       .|..||+|+|+++ .||.+|..|+.|++|-|
T Consensus       212 -------------------------------------------------pLi~lDfScNkis-~iPv~fr~m~~Lq~l~L  241 (722)
T KOG0532|consen  212 -------------------------------------------------PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQL  241 (722)
T ss_pred             -------------------------------------------------ceeeeecccCcee-ecchhhhhhhhheeeee
Confidence                                                             2466888888888 88888888888888888


Q ss_pred             CCCcCCcCCCcccc---CcCCCCEEECCCCc
Q 041908          739 SHNHLSGSIPRSFS---NLKMIESMDLSYNK  766 (883)
Q Consensus       739 s~N~l~g~ip~~l~---~l~~L~~LdLs~N~  766 (883)
                      .+|.|. ..|..+.   ...=-++|+..-.+
T Consensus       242 enNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  242 ENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             ccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            888888 5565543   22334566666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.19  E-value=3.1e-11  Score=135.17  Aligned_cols=199  Identities=32%  Similarity=0.486  Sum_probs=121.1

Q ss_pred             EEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCC-CcCeeecccCccccccchhhhcCCCCCEEeccCC
Q 041908          498 VLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSS-SLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDN  576 (883)
Q Consensus       498 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N  576 (883)
                      .+++..|.+...+. .+...+.++.|++.+|.++...+ ...... +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCch-hhhcccceeEEecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            45555555532222 23334556666666666654333 233332 6777777777776 55566777777777777777


Q ss_pred             cCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCccccccc
Q 041908          577 EFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTL  656 (883)
Q Consensus       577 ~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  656 (883)
                      +++ .+|...+..++|+.|++++|++. .+|........|+.+++++|+.. .++..+                      
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~----------------------  228 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSL----------------------  228 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhh----------------------
Confidence            777 45555546677777777777777 56665555566777777777521 111111                      


Q ss_pred             ccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCee
Q 041908          657 VVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHAL  736 (883)
Q Consensus       657 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L  736 (883)
                                                                     ..+..+..+.+++|++. .+|..++.++.++.|
T Consensus       229 -----------------------------------------------~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L  260 (394)
T COG4886         229 -----------------------------------------------SNLKNLSGLELSNNKLE-DLPESIGNLSNLETL  260 (394)
T ss_pred             -----------------------------------------------hhcccccccccCCceee-eccchhcccccccee
Confidence                                                           11334455667777776 446667777777777


Q ss_pred             eCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCcc
Q 041908          737 NLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLE  774 (883)
Q Consensus       737 ~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~  774 (883)
                      ++++|.++. ++. ++.+.+++.||+++|.++..+|..
T Consensus       261 ~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         261 DLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             ccccccccc-ccc-ccccCccCEEeccCccccccchhh
Confidence            777777773 333 777777777777777777665544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.17  E-value=2.9e-11  Score=135.42  Aligned_cols=200  Identities=32%  Similarity=0.475  Sum_probs=162.3

Q ss_pred             cEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCC-CCCEEeccCCcCCccCCccccCCCCCcEEEccC
Q 041908          521 RILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSS-QLMTLDLRDNEFSGNIPPLINEDSNLRALLLRG  599 (883)
Q Consensus       521 ~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  599 (883)
                      ..++++.|.+...+. .+...+.++.|++.+|.++ .+|....... +|+.|++++|++. .+|..+..+++|+.|++++
T Consensus        96 ~~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          96 PSLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             ceeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            357888887743333 2344578999999999998 6777777774 9999999999998 5667789999999999999


Q ss_pred             CcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCC
Q 041908          600 NNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGE  679 (883)
Q Consensus       600 N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  679 (883)
                      |+++ .+|...+.++.|+.|++++|+++ .+|...                                             
T Consensus       173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~---------------------------------------------  205 (394)
T COG4886         173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEI---------------------------------------------  205 (394)
T ss_pred             chhh-hhhhhhhhhhhhhheeccCCccc-cCchhh---------------------------------------------
Confidence            9998 67777768899999999999986 233211                                             


Q ss_pred             ChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCE
Q 041908          680 DNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIES  759 (883)
Q Consensus       680 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~  759 (883)
                                              +....|++|++++|.+. .++..+..+..+..|.+++|++. .+|..++.+++++.
T Consensus       206 ------------------------~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~  259 (394)
T COG4886         206 ------------------------ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLET  259 (394)
T ss_pred             ------------------------hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccce
Confidence                                    01345788999999765 67778999999999999999998 44788999999999


Q ss_pred             EECCCCcccccCCccccCCCCCcEEEccCCcCcccCCCC
Q 041908          760 MDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNT  798 (883)
Q Consensus       760 LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~  798 (883)
                      |++++|+++. ++. +..+.+++.|++++|.++...|..
T Consensus       260 L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         260 LDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             eccccccccc-ccc-ccccCccCEEeccCccccccchhh
Confidence            9999999994 444 889999999999999999877754

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.05  E-value=1.5e-10  Score=110.68  Aligned_cols=127  Identities=32%  Similarity=0.405  Sum_probs=36.9

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccC
Q 041908          110 SLTSLTSLFLEGNNLGVGFKPMKVLP-NLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSW  188 (883)
Q Consensus       110 ~l~~L~~L~Ls~n~l~~~~ip~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~  188 (883)
                      +..++++|+|.+|.++.  |  +.++ .+.+|+.|||++|.+...                   +.+..+++|++|++++
T Consensus        17 n~~~~~~L~L~~n~I~~--I--e~L~~~l~~L~~L~Ls~N~I~~l-------------------~~l~~L~~L~~L~L~~   73 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST--I--ENLGATLDKLEVLDLSNNQITKL-------------------EGLPGLPRLKTLDLSN   73 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---------------------TT----TT--EEE--S
T ss_pred             ccccccccccccccccc--c--cchhhhhcCCCEEECCCCCCccc-------------------cCccChhhhhhcccCC
Confidence            33445556666665543  2  2344 355666666666655432                   2344556666666666


Q ss_pred             CcCCCCCCccc-cCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccc--cChHhhhcCCCCcEEEc
Q 041908          189 NKLDGSLPQCL-SNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGS--FSLSVLANHSRLEVLQI  260 (883)
Q Consensus       189 n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~--~~~~~l~~l~~L~~L~L  260 (883)
                      |+|+. +++.+ ..+++|++|++++|+|..--....++.+++|++|++.+|.++..  .....+..+++|+.||-
T Consensus        74 N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   74 NRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             S---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            66653 33333 24566666666666655211113455666666666666666522  11234556666666654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.05  E-value=4.3e-11  Score=117.93  Aligned_cols=136  Identities=24%  Similarity=0.250  Sum_probs=98.2

Q ss_pred             ccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchh
Q 041908          586 INEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAIS  665 (883)
Q Consensus       586 l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  665 (883)
                      +...+.|++++|++|.|+ .+.++..-++.++.|++|+|.+...     .++                            
T Consensus       280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-----~nL----------------------------  325 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-----QNL----------------------------  325 (490)
T ss_pred             cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee-----hhh----------------------------
Confidence            344466788888888887 5667777778888888888877511     000                            


Q ss_pred             hhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCc
Q 041908          666 AYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSG  745 (883)
Q Consensus       666 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  745 (883)
                                                            .-+++|+.||||+|.++ .+-.+=..|-+.++|+|+.|.+..
T Consensus       326 --------------------------------------a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~  366 (490)
T KOG1259|consen  326 --------------------------------------AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET  366 (490)
T ss_pred             --------------------------------------hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh
Confidence                                                  11567888888888887 444444566778888999998864


Q ss_pred             CCCccccCcCCCCEEECCCCcccccC-CccccCCCCCcEEEccCCcCcccCC
Q 041908          746 SIPRSFSNLKMIESMDLSYNKLRGQI-PLELSELNYLAIFNVSYNDLSGPTP  796 (883)
Q Consensus       746 ~ip~~l~~l~~L~~LdLs~N~Lsg~i-p~~l~~l~~L~~l~ls~N~l~g~ip  796 (883)
                      .  ..++.|-+|+.||+++|++.... -..+++|+-|+.+.+-+|++++.+.
T Consensus       367 L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  367 L--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             h--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            3  45788888999999999886432 2467888888999999999988443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.02  E-value=6.7e-11  Score=119.81  Aligned_cols=187  Identities=21%  Similarity=0.293  Sum_probs=88.6

Q ss_pred             CCCCCCEEEccCcccCCcCccc----ccCCCCCCeEEccCcccCccc-------------cccccCCCCCCEEEccCCcc
Q 041908          420 GCVSLAFMNVSHNYFGGQIFPK----YMSMTQLAWLYLNDNQFTGRL-------------EEGLLNAPSLHILDVSNNML  482 (883)
Q Consensus       420 ~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~-------------~~~~~~l~~L~~L~ls~n~l  482 (883)
                      +++.|++++||+|.+....++.    +..+..|++|+|.+|.+.-.-             ......-+.|+++...+|++
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            4445555555555554433332    234556666666666554111             11123345677777777766


Q ss_pred             CCC----cchhhhCCCCCCEEECCCCcCCCC----CCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCcc
Q 041908          483 SGQ----LPHWVGNFSNLDVLLMSRNSLEGD----VSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSL  554 (883)
Q Consensus       483 ~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l  554 (883)
                      ...    +...|...+.|+.+.+..|.|...    +...+..+++|++|||.+|-++......                 
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~-----------------  232 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA-----------------  232 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH-----------------
Confidence            432    223455556666666666655421    1123445555555555555554221111                 


Q ss_pred             ccccchhhhcCCCCCEEeccCCcCCccCCccc-----cCCCCCcEEEccCCccccc----CchhhcCCCCCCEEEcCCCc
Q 041908          555 NGSIPSALFQSSQLMTLDLRDNEFSGNIPPLI-----NEDSNLRALLLRGNNLQGN----IPQQLCHLRKIAIVDISYNL  625 (883)
Q Consensus       555 ~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~L~~N~l~g~----~p~~l~~l~~L~~L~ls~N~  625 (883)
                         +...+..+++|+.|++++|.+...-...+     ...++|+.|.+.+|.++..    +...+...+.|..|+|++|.
T Consensus       233 ---LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  233 ---LAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             ---HHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence               12223333444444444444443222111     1235555555555555421    22233445666666666666


Q ss_pred             C
Q 041908          626 L  626 (883)
Q Consensus       626 l  626 (883)
                      +
T Consensus       310 l  310 (382)
T KOG1909|consen  310 L  310 (382)
T ss_pred             c
Confidence            6

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.00  E-value=4.3e-10  Score=107.46  Aligned_cols=112  Identities=29%  Similarity=0.369  Sum_probs=39.3

Q ss_pred             CCCCCCCCCEEECCCCCCCCccccccccchhhcccccchhhhhc-CCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcc
Q 041908          133 VLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARIC-ELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLT  211 (883)
Q Consensus       133 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  211 (883)
                      .+.+..++++|+|++|.+...                   +.++ .+.+|+.|+|++|.|+. + +.+..+++|++|+++
T Consensus        14 ~~~n~~~~~~L~L~~n~I~~I-------------------e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~   72 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQISTI-------------------ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLS   72 (175)
T ss_dssp             -----------------------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--
T ss_pred             ccccccccccccccccccccc-------------------cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccC
Confidence            466677788999999887532                   3454 47788999999998884 3 357788899999999


Q ss_pred             CCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcCCCCcEEEccCcccc
Q 041908          212 SNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIE  266 (883)
Q Consensus       212 ~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~  266 (883)
                      +|+++ .++......+++|++|++++|++...-....++.+++|++|++.+|++.
T Consensus        73 ~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   73 NNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            99988 6762223468889999999998874434455677777777777777664

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.97  E-value=1.7e-10  Score=116.91  Aligned_cols=242  Identities=24%  Similarity=0.221  Sum_probs=135.6

Q ss_pred             cCCCCCCEEECCCCCCCCC----CchhhcCCCCCCEEeCCCCCCCCC---CCC------CCCCCCCCCCCEEECCCCCCC
Q 041908           85 GSLKQLKILNIGFNSFSES----LVPLLTSLTSLTSLFLEGNNLGVG---FKP------MKVLPNLRNLEVLDLSGNGLI  151 (883)
Q Consensus        85 ~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~---~ip------~~~l~~l~~L~~L~Ls~n~l~  151 (883)
                      .....+++++||+|.|...    +.+.+.+-+.|+..++++-- +|-   .+|      .+++...++|++||||.|.+.
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            3456789999999998643    56667788899998888642 221   023      123456678899999998886


Q ss_pred             CccccccccchhhcccccchhhhhcCCCCCCEEEccCCcCCCCC-------------CccccCCCCCCEEEccCCccccc
Q 041908          152 GSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSL-------------PQCLSNLTYLRVLDLTSNQLSGN  218 (883)
Q Consensus       152 ~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-------------p~~l~~l~~L~~L~Ls~n~l~~~  218 (883)
                      ...+             ..+..-+.++..|++|.|.+|.+.-.-             ....+.-++|+++..+.|++. .
T Consensus       106 ~~g~-------------~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n  171 (382)
T KOG1909|consen  106 PKGI-------------RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-N  171 (382)
T ss_pred             ccch-------------HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-c
Confidence            5443             233345677888888888888774211             112344567777777777765 3


Q ss_pred             cCh----hhhcCCCCCCEEeccCCcCc--cc-cChHhhhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCcc
Q 041908          219 LPI----SVFANLTSLEYLSLSGNNFQ--GS-FSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGT  291 (883)
Q Consensus       219 ip~----~~~~~l~~L~~L~L~~n~l~--g~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  291 (883)
                      -+.    ..|...+.|+.+.+..|.+.  |. .-...+..++.|++|||..|.++.....                   .
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~-------------------~  232 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV-------------------A  232 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH-------------------H
Confidence            221    34556667777777777654  11 2223455666666666655554432110                   1


Q ss_pred             CchhhhcCCCCCEEEccCCCCcCC----cchHHHhcCCCCcEEEccccccccccc-----CCCCCCCccEEEccCCcc
Q 041908          292 IPSFLQYQYDLRYIDLSHNNLAGT----FPTWLLQNNTKLEFLFLFNNFLKGLLH-----LPDSKRDLLHLVISNNNF  360 (883)
Q Consensus       292 ~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~~~L~~L~ls~n~l  360 (883)
                      +...+..+++|+.|++++|.+...    +-..+....+.|++|.+.+|.++.-..     .....+.|+.|++++|.+
T Consensus       233 LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  233 LAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            122333444455555555444321    112222234555555555555442210     011356666677777766

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=3.6e-10  Score=117.61  Aligned_cols=195  Identities=22%  Similarity=0.173  Sum_probs=103.6

Q ss_pred             hhhcCCCCCEEEccCCCCcCCcc-hHHHhcCCCCcEEEcccccccccccCC--CCCCCccEEEccCCccccccchhhhcC
Q 041908          295 FLQYQYDLRYIDLSHNNLAGTFP-TWLLQNNTKLEFLFLFNNFLKGLLHLP--DSKRDLLHLVISNNNFIGMLPDNFGMI  371 (883)
Q Consensus       295 ~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~L~~L~ls~n~l~~~~p~~~~~~  371 (883)
                      ....|++++.|||++|-+....| ..+.+.+++|+.|+++.|++.....-.  ..++.|+.|.++.|.++..--..+...
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            45567777777777776653222 123446677777777777665432211  245667777777777664433333334


Q ss_pred             CCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccch-hHhhCCCCCCEEEccCcccCCcCcccccCCCCCCe
Q 041908          372 LPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPK-QFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAW  450 (883)
Q Consensus       372 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  450 (883)
                      +|+|+.|++..|.....-......+..|++|||++|++. ..+. .....++.|..|+++.+.+...-.+...       
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~-------  292 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVE-------  292 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCcc-------
Confidence            677777777777422222233344556777777777665 2221 1223455555555555554432111110       


Q ss_pred             EEccCcccCccccccccCCCCCCEEEccCCccCCC-cchhhhCCCCCCEEECCCCcCCC
Q 041908          451 LYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQ-LPHWVGNFSNLDVLLMSRNSLEG  508 (883)
Q Consensus       451 L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~  508 (883)
                                 .-+-...+++|++|++..|++... .-..+..+++|+.|.+..|.++.
T Consensus       293 -----------s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  293 -----------SLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             -----------chhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence                       000123346677777777776421 11224445667777777776654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=2.9e-10  Score=118.35  Aligned_cols=39  Identities=18%  Similarity=0.108  Sum_probs=19.3

Q ss_pred             CCCcCeeecccCccccccc--hhhhcCCCCCEEeccCCcCCc
Q 041908          541 SSSLWHLFLHNNSLNGSIP--SALFQSSQLMTLDLRDNEFSG  580 (883)
Q Consensus       541 ~~~L~~L~L~~n~l~~~~p--~~~~~~~~L~~L~Ls~N~l~~  580 (883)
                      .++|+.|++..|++. ..+  ..+..+.+|+.|.+..|.++.
T Consensus       300 f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  300 FPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             cccceeeecccCccc-cccccchhhccchhhhhhcccccccc
Confidence            345555555555553 111  123344556666666666653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.84  E-value=2e-09  Score=84.45  Aligned_cols=60  Identities=42%  Similarity=0.593  Sum_probs=36.2

Q ss_pred             cccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcc
Q 041908          708 YMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKL  767 (883)
Q Consensus       708 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~L  767 (883)
                      +|+.|++++|+|+...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455666666666644445566666666666666666655555666666666666666654

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.84  E-value=6e-10  Score=110.02  Aligned_cols=134  Identities=19%  Similarity=0.172  Sum_probs=104.3

Q ss_pred             hhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCC
Q 041908          490 VGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLM  569 (883)
Q Consensus       490 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~  569 (883)
                      +.....|+++||++|.|+ .+.++..-.++++.|++|+|.+....  .+..+++|+.|||++|.++ .+..+-..+-+.+
T Consensus       280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK  355 (490)
T ss_pred             cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence            344467888999999887 45666777788999999999886543  3677888999999999887 5666666778889


Q ss_pred             EEeccCCcCCccCCccccCCCCCcEEEccCCcccccC-chhhcCCCCCCEEEcCCCcCCCC
Q 041908          570 TLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNI-PQQLCHLRKIAIVDISYNLLDGS  629 (883)
Q Consensus       570 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~-p~~l~~l~~L~~L~ls~N~l~~~  629 (883)
                      +|.|+.|.+...  +.++.+-+|..|++++|+|...- -..+++++.|+.+.|.+|++.+.
T Consensus       356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             eeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            999999988743  56777888999999999887422 23578889999999999998754

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.82  E-value=2.3e-09  Score=128.03  Aligned_cols=282  Identities=24%  Similarity=0.271  Sum_probs=162.7

Q ss_pred             CcCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCC--CCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccc
Q 041908           84 NGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNN--LGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKL  161 (883)
Q Consensus        84 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~--l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L  161 (883)
                      ..+...+|+..+-+|.+... +.. ..++.|++|-+.+|.  +..  ++.+.|..++.|++|||++|.=.+.+|      
T Consensus       519 ~~~~~~~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~~--is~~ff~~m~~LrVLDLs~~~~l~~LP------  588 (889)
T KOG4658|consen  519 VKSWNSVRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLLE--ISGEFFRSLPLLRVLDLSGNSSLSKLP------  588 (889)
T ss_pred             ccchhheeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhhh--cCHHHHhhCcceEEEECCCCCccCcCC------
Confidence            33445677788777776432 111 234479999998886  433  554568889999999999987767776      


Q ss_pred             hhhcccccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCc
Q 041908          162 ELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ  241 (883)
Q Consensus       162 ~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~  241 (883)
                                 ..++.+-+|++|+|+++.+. .+|..++++.+|.+|++..+.-...+| .....+++|++|.+......
T Consensus       589 -----------~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~~  655 (889)
T KOG4658|consen  589 -----------SSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRSALS  655 (889)
T ss_pred             -----------hHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccccccccc-chhhhcccccEEEeeccccc
Confidence                       89999999999999999998 799999999999999999887654566 66777999999999776522


Q ss_pred             -cccChHhhhcCCCCcEEEccCcccccCCCCCCCCccc----eEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCc
Q 041908          242 -GSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQL----KVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTF  316 (883)
Q Consensus       242 -g~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L----~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  316 (883)
                       +..-...+.++..|+.+....... ...........|    +.+.+.++.. ...+..+..+.+|+.|.+.++.+....
T Consensus       656 ~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~  733 (889)
T KOG4658|consen  656 NDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEIV  733 (889)
T ss_pred             cchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCchhh
Confidence             122223444555555544432221 000011111111    1222222221 123344555666666666666554211


Q ss_pred             chHHHhcCCCCcEEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCcccccc
Q 041908          317 PTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYT  396 (883)
Q Consensus       317 p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  396 (883)
                      ..+    ....+.++              .++++..+.+.++..... +.+. ...++|+.|.+..+.....+.+....+
T Consensus       734 ~~~----~~~~~~~~--------------~f~~l~~~~~~~~~~~r~-l~~~-~f~~~L~~l~l~~~~~~e~~i~~~k~~  793 (889)
T KOG4658|consen  734 IEW----EESLIVLL--------------CFPNLSKVSILNCHMLRD-LTWL-LFAPHLTSLSLVSCRLLEDIIPKLKAL  793 (889)
T ss_pred             ccc----ccccchhh--------------hHHHHHHHHhhccccccc-cchh-hccCcccEEEEecccccccCCCHHHHh
Confidence            111    01111110              011222222222222111 1111 125777888887777665665566666


Q ss_pred             CcccEEeccCCccc
Q 041908          397 VRLLFLDLSSNNFS  410 (883)
Q Consensus       397 ~~L~~L~Ls~n~l~  410 (883)
                      ..++.+.+..+.+.
T Consensus       794 ~~l~~~i~~f~~~~  807 (889)
T KOG4658|consen  794 LELKELILPFNKLE  807 (889)
T ss_pred             hhcccEEecccccc
Confidence            66666555555554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.81  E-value=2.7e-09  Score=83.74  Aligned_cols=61  Identities=41%  Similarity=0.561  Sum_probs=57.4

Q ss_pred             ccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcC
Q 041908          731 QELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDL  791 (883)
Q Consensus       731 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l  791 (883)
                      ++|++|++++|+++...+..|.++++|++||+++|+++...|.+|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4689999999999988778999999999999999999998889999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.80  E-value=5.4e-10  Score=125.24  Aligned_cols=85  Identities=24%  Similarity=0.278  Sum_probs=57.9

Q ss_pred             ccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCccccc---CCcc-ccCCCCCcEE
Q 041908          709 MTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQ---IPLE-LSELNYLAIF  784 (883)
Q Consensus       709 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~---ip~~-l~~l~~L~~l  784 (883)
                      |+.+++++|++. .++..+..+..+..|+++.|+++..  ..+.....+..+.++.|.+...   .... ......+..+
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            567788888887 5556667777888888888887754  3355666777777777776522   1121 4556677788


Q ss_pred             EccCCcCcccCC
Q 041908          785 NVSYNDLSGPTP  796 (883)
Q Consensus       785 ~ls~N~l~g~ip  796 (883)
                      .+.+|......+
T Consensus       311 ~~~~~~~~~~~~  322 (414)
T KOG0531|consen  311 TLELNPIRKISS  322 (414)
T ss_pred             ccccCccccccc
Confidence            888887777555

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.72  E-value=1.1e-08  Score=73.15  Aligned_cols=42  Identities=31%  Similarity=0.710  Sum_probs=29.1

Q ss_pred             HHHHHHHHHhhhcCCcCCcccccCCccCCCCCCCCCCCCccceeecC
Q 041908           29 DNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCSWERIKCN   75 (883)
Q Consensus        29 ~~~~~all~~k~~~~~~~~~~~~~~~l~sW~~~~~~~cc~w~gv~C~   75 (883)
                      ++|++||++||+++..+     +.+.+.+|......+||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~-----~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNND-----PSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-S-----C-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccc-----cCcccccCCCcCCCCCeeeccEEeC
Confidence            68999999999999642     2468999943223799999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.70  E-value=2.1e-09  Score=120.49  Aligned_cols=248  Identities=23%  Similarity=0.226  Sum_probs=160.7

Q ss_pred             CCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeE
Q 041908          372 LPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWL  451 (883)
Q Consensus       372 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  451 (883)
                      +..++.+.+..|.+.. +-..+..+++|+.|++.+|++. .+... ...+++|++|++++|.|+...  .+..++.|+.|
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L  145 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL  145 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccc-hhhhhcchheecccccccccc--chhhccchhhh
Confidence            4555555566666552 2333556667777777777766 33331 245677777777777776543  33456668888


Q ss_pred             EccCcccCccccccccCCCCCCEEEccCCccCCCcc-hhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcC
Q 041908          452 YLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLP-HWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKL  530 (883)
Q Consensus       452 ~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  530 (883)
                      ++.+|.++..  ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+...  ..+..+..+..+++..|.+
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI  220 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence            8888887743  334557888888888888875433 2 46788888888988887642  2344455566668888887


Q ss_pred             cCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCccccc---Cc
Q 041908          531 YGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGN---IP  607 (883)
Q Consensus       531 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~---~p  607 (883)
                      +...+.......+|+.+++++|.+. .++..+..+..+..+++.+|++...  ..+.....+..+....|++...   ..
T Consensus       221 ~~~~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (414)
T KOG0531|consen  221 SKLEGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQ  297 (414)
T ss_pred             eeccCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhc
Confidence            6544321111113889999999887 4445667788899999999988754  2344556677777777776532   11


Q ss_pred             hh-hcCCCCCCEEEcCCCcCCCCCCc
Q 041908          608 QQ-LCHLRKIAIVDISYNLLDGSIPS  632 (883)
Q Consensus       608 ~~-l~~l~~L~~L~ls~N~l~~~~p~  632 (883)
                      .. ....+.++.+.+..|......+.
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (414)
T KOG0531|consen  298 EYITSAAPTLVTLTLELNPIRKISSL  323 (414)
T ss_pred             cccccccccccccccccCcccccccc
Confidence            11 45667788888888877655443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.57  E-value=7.3e-08  Score=115.32  Aligned_cols=129  Identities=26%  Similarity=0.297  Sum_probs=75.7

Q ss_pred             CCCcEEEcccccccccccCCCCCCCccEEEccCCcc-ccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEe
Q 041908          325 TKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNF-IGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLD  403 (883)
Q Consensus       325 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  403 (883)
                      ...+...+-+|.+..+... ..++.|++|-+..|.- ...++..++..++.|+.||+++|.--+.+|..++.+-+|++|+
T Consensus       523 ~~~rr~s~~~~~~~~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             hheeEEEEeccchhhccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            3444555555544433211 1333566666666642 3345555545567777777776665566777777777777777


Q ss_pred             ccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCc
Q 041908          404 LSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDN  456 (883)
Q Consensus       404 Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  456 (883)
                      +++..+. .+|..+ ..+..|.+|++..+.-...++.....+++|++|.+..-
T Consensus       602 L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  602 LSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccCCCcc-ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            7777766 666665 46666777777666544444455555666776666544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.47  E-value=9.3e-09  Score=90.22  Aligned_cols=91  Identities=25%  Similarity=0.380  Sum_probs=69.1

Q ss_pred             ccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEc
Q 041908          707 EYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNV  786 (883)
Q Consensus       707 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~l  786 (883)
                      +..+.|+|++|+|+ .+|.++..++.|+.||++.|.|. ..|+.+..|.+|.+||.-.|.+. +||..+---+.....++
T Consensus        77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~l  153 (177)
T KOG4579|consen   77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKL  153 (177)
T ss_pred             chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHh
Confidence            45677888899888 88888888999999999999888 56777788888888888888886 66655432234455666


Q ss_pred             cCCcCcccCCCCcc
Q 041908          787 SYNDLSGPTPNTKQ  800 (883)
Q Consensus       787 s~N~l~g~ip~~~~  800 (883)
                      .++++.+..|...|
T Consensus       154 gnepl~~~~~~klq  167 (177)
T KOG4579|consen  154 GNEPLGDETKKKLQ  167 (177)
T ss_pred             cCCcccccCccccc
Confidence            77788877776544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.40  E-value=6e-09  Score=114.70  Aligned_cols=87  Identities=33%  Similarity=0.368  Sum_probs=40.9

Q ss_pred             hhcCCCCCCEEEccCCcCCCCCCc-cccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcC
Q 041908          174 RICELKNLVELNLSWNKLDGSLPQ-CLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANH  252 (883)
Q Consensus       174 ~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l  252 (883)
                      .+..|++|++|||++|.+. .+|. ....+. |+.|.+++|.++ ++-  .+.+|++|+.||+++|-+.+.-....+..+
T Consensus       204 ~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~-tL~--gie~LksL~~LDlsyNll~~hseL~pLwsL  278 (1096)
T KOG1859|consen  204 NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT-TLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSL  278 (1096)
T ss_pred             HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH-hhh--hHHhhhhhhccchhHhhhhcchhhhHHHHH
Confidence            4445555555555555554 2221 122222 555555555554 333  345555555555555555443333334444


Q ss_pred             CCCcEEEccCccc
Q 041908          253 SRLEVLQISRLQI  265 (883)
Q Consensus       253 ~~L~~L~L~~~~~  265 (883)
                      ..|+.|+|.+|.+
T Consensus       279 s~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  279 SSLIVLWLEGNPL  291 (1096)
T ss_pred             HHHHHHhhcCCcc
Confidence            4455555555443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.33  E-value=1.2e-08  Score=112.27  Aligned_cols=119  Identities=28%  Similarity=0.273  Sum_probs=92.8

Q ss_pred             hcccccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccc
Q 041908          164 LNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGS  243 (883)
Q Consensus       164 ~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~  243 (883)
                      .+|.+..+..++.-++.|++|||++|+++..  +.+..+++|++|||+.|.+. .+|.-....+. |+.|.+++|.++. 
T Consensus       172 syN~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t-  246 (1096)
T KOG1859|consen  172 SYNRLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT-  246 (1096)
T ss_pred             chhhHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh-
Confidence            3777777778888899999999999999854  37888999999999999999 88844444555 9999999999873 


Q ss_pred             cChHhhhcCCCCcEEEccCcccccCC--CCCCCCccceEEEcccCcCC
Q 041908          244 FSLSVLANHSRLEVLQISRLQIETEN--FPWLPRFQLKVLNLRRCNIS  289 (883)
Q Consensus       244 ~~~~~l~~l~~L~~L~L~~~~~~~~~--~~~~~~~~L~~L~L~~n~l~  289 (883)
                        ...+.++++|+.||+++|-+....  .+...+..|++|+|.+|.+.
T Consensus       247 --L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  247 --LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             --hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence              235788999999999998876532  23344456777778777664

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=4.5e-08  Score=97.14  Aligned_cols=35  Identities=31%  Similarity=0.352  Sum_probs=20.5

Q ss_pred             CccceEEEcccCcCCccCchh---hhcCCCCCEEEccCCC
Q 041908          275 RFQLKVLNLRRCNISGTIPSF---LQYQYDLRYIDLSHNN  311 (883)
Q Consensus       275 ~~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~Ls~n~  311 (883)
                      ...|++|.++.|..  .+|..   +...+.|.+||+.++-
T Consensus       337 f~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  337 FNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             cchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            34455666666543  34443   3566778888877653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=1.4e-07  Score=93.72  Aligned_cols=155  Identities=21%  Similarity=0.211  Sum_probs=75.5

Q ss_pred             ccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCC-cccCccchhHhhCCCCCCEEE
Q 041908          350 LLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSN-NFSGELPKQFLTGCVSLAFMN  428 (883)
Q Consensus       350 L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~ip~~~~~~l~~L~~L~  428 (883)
                      |+++|+++-.++..--..+...|.+|+.|.+.++++...+...+....+|+.|+++.+ .++..--.-++..|+.|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            4444554444433222223233667777777777777666666677777777777765 333222233456677777777


Q ss_pred             ccCcccCCcCcccc--cCCCCCCeEEccCcccC---ccccccccCCCCCCEEEccCCc-cCCCcchhhhCCCCCCEEECC
Q 041908          429 VSHNYFGGQIFPKY--MSMTQLAWLYLNDNQFT---GRLEEGLLNAPSLHILDVSNNM-LSGQLPHWVGNFSNLDVLLMS  502 (883)
Q Consensus       429 Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~l~~L~~L~L~  502 (883)
                      ++.|.+........  .--++|+.|+++++.-.   ..+..-...+++|..||+++|. ++...-..|..++.|++|.++
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence            77765543321110  01234555555554211   0111112334555555555443 222222334444455555544


Q ss_pred             CC
Q 041908          503 RN  504 (883)
Q Consensus       503 ~n  504 (883)
                      .|
T Consensus       347 RC  348 (419)
T KOG2120|consen  347 RC  348 (419)
T ss_pred             hh
Confidence            44

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.04  E-value=4e-06  Score=82.45  Aligned_cols=93  Identities=26%  Similarity=0.324  Sum_probs=52.2

Q ss_pred             CCCCCCCEEECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcC---CCCCC-------ccccCCCC
Q 041908          135 PNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKL---DGSLP-------QCLSNLTY  204 (883)
Q Consensus       135 ~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l---~~~~p-------~~l~~l~~  204 (883)
                      ..+..+..+|||+|.|...-.             +.+...+.+-.+|+..+++.-..   ...++       +++.+|++
T Consensus        27 ~~~d~~~evdLSGNtigtEA~-------------e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~   93 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAM-------------EELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPR   93 (388)
T ss_pred             HhhcceeEEeccCCcccHHHH-------------HHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCc
Confidence            345666777777776644322             11113344556667666665311   11122       23456777


Q ss_pred             CCEEEccCCccccccCh---hhhcCCCCCCEEeccCCcC
Q 041908          205 LRVLDLTSNQLSGNLPI---SVFANLTSLEYLSLSGNNF  240 (883)
Q Consensus       205 L~~L~Ls~n~l~~~ip~---~~~~~l~~L~~L~L~~n~l  240 (883)
                      |+..+||+|.+....|.   +.++.-+.|++|.+++|.+
T Consensus        94 l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          94 LQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             ceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            77777777776655552   2355666777777777765

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=1.2e-06  Score=87.30  Aligned_cols=64  Identities=33%  Similarity=0.359  Sum_probs=30.0

Q ss_pred             hcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCC
Q 041908          175 ICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGN  238 (883)
Q Consensus       175 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n  238 (883)
                      +.+++.|++|+|+.|.+...|...=..+.+|++|-|.+..+...--...+..+|.++.|.++.|
T Consensus        93 le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen   93 LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             HhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            4456666666666665553322111234455555555554432222233444455555555544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.00  E-value=3.4e-06  Score=82.98  Aligned_cols=141  Identities=19%  Similarity=0.236  Sum_probs=78.9

Q ss_pred             CCCCCEEECCCCCCCCC----CchhhcCCCCCCEEeCCCCCCCCC--CCC------CCCCCCCCCCCEEECCCCCCCCcc
Q 041908           87 LKQLKILNIGFNSFSES----LVPLLTSLTSLTSLFLEGNNLGVG--FKP------MKVLPNLRNLEVLDLSGNGLIGSL  154 (883)
Q Consensus        87 l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~--~ip------~~~l~~l~~L~~L~Ls~n~l~~~~  154 (883)
                      +..++.+|||+|.|...    +...+.+-.+|+..++++-.....  .+|      ..++.+|++|+..+||.|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            55678888998888754    444555667788877776422110  011      124556777777777777776655


Q ss_pred             ccccccchhhcccccchhhhhcCCCCCCEEEccCCcCCCC----CCc---------cccCCCCCCEEEccCCccccccCh
Q 041908          155 TMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGS----LPQ---------CLSNLTYLRVLDLTSNQLSGNLPI  221 (883)
Q Consensus       155 ~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~---------~l~~l~~L~~L~Ls~n~l~~~ip~  221 (883)
                      |             ..+..-++.-+.|++|.+++|.+.-.    +-.         ...+-|.|++.+...|++. ..|.
T Consensus       109 ~-------------e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~  174 (388)
T COG5238         109 P-------------EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSK  174 (388)
T ss_pred             c-------------hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcH
Confidence            5             22224456667777777777765311    111         1223466666666666655 3331


Q ss_pred             h----hhcCCCCCCEEeccCCcCc
Q 041908          222 S----VFANLTSLEYLSLSGNNFQ  241 (883)
Q Consensus       222 ~----~~~~l~~L~~L~L~~n~l~  241 (883)
                      .    .+..-.+|+.+.+..|.|.
T Consensus       175 ~~~a~~l~sh~~lk~vki~qNgIr  198 (388)
T COG5238         175 ELSAALLESHENLKEVKIQQNGIR  198 (388)
T ss_pred             HHHHHHHHhhcCceeEEeeecCcC
Confidence            1    1222245566666665554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.91  E-value=5e-06  Score=82.92  Aligned_cols=84  Identities=25%  Similarity=0.248  Sum_probs=46.0

Q ss_pred             CCCCCEEeccCCcCccccC-hHhhhcCCCCcEEEccCcccccCCCCC-CCCccceEEEcccCcCCcc-CchhhhcCCCCC
Q 041908          227 LTSLEYLSLSGNNFQGSFS-LSVLANHSRLEVLQISRLQIETENFPW-LPRFQLKVLNLRRCNISGT-IPSFLQYQYDLR  303 (883)
Q Consensus       227 l~~L~~L~L~~n~l~g~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~  303 (883)
                      .+.++.|||.+|.++.--. ...+.+++.|+.|+++.|++....... .+..+|++|-|.+..+.-. ....+..++.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            4556666666666652111 123556666666666666655544333 4555677777766665422 223444555556


Q ss_pred             EEEccCC
Q 041908          304 YIDLSHN  310 (883)
Q Consensus       304 ~L~Ls~n  310 (883)
                      .|.+|.|
T Consensus       150 elHmS~N  156 (418)
T KOG2982|consen  150 ELHMSDN  156 (418)
T ss_pred             hhhhccc
Confidence            6666555

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.91  E-value=1.3e-06  Score=77.03  Aligned_cols=60  Identities=22%  Similarity=0.439  Sum_probs=30.1

Q ss_pred             CCCCEEeccCCcCCccCCccc-cCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCC
Q 041908          566 SQLMTLDLRDNEFSGNIPPLI-NEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLD  627 (883)
Q Consensus       566 ~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~  627 (883)
                      ..|+..+|++|.+.. +|..| ...+.++.|++++|+++ .+|+.+..++.|+.++++.|++.
T Consensus        53 ~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   53 YELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             ceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence            344444555555552 23222 33345555555555555 45555555555555555555553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.88  E-value=7.9e-06  Score=58.52  Aligned_cols=35  Identities=37%  Similarity=0.669  Sum_probs=14.5

Q ss_pred             CCeeeCCCCcCCcCCCccccCcCCCCEEECCCCccc
Q 041908          733 LHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLR  768 (883)
Q Consensus       733 L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Ls  768 (883)
                      |++|+|++|+|+ .+|..+++|++|+.||+++|+++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            444444444444 23333444444444444444443

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.87  E-value=9.8e-06  Score=58.05  Aligned_cols=38  Identities=39%  Similarity=0.670  Sum_probs=32.9

Q ss_pred             ccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCc
Q 041908          707 EYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSG  745 (883)
Q Consensus       707 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  745 (883)
                      ++|++|++++|+|+ .+|.++++|++|++|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            36899999999999 778889999999999999999984

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.83  E-value=7e-05  Score=80.71  Aligned_cols=75  Identities=13%  Similarity=0.263  Sum_probs=44.4

Q ss_pred             ccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCE
Q 041908          539 NHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAI  618 (883)
Q Consensus       539 ~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~  618 (883)
                      ..+.+++.|++++|.++ .+|.   -..+|+.|.++++.--..+|..+  .++|++|++++|.....+|.      +|+.
T Consensus        49 ~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~  116 (426)
T PRK15386         49 EEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS  116 (426)
T ss_pred             HHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence            34567778888888776 4551   23467888887754333556544  24677777777732224443      3555


Q ss_pred             EEcCCCc
Q 041908          619 VDISYNL  625 (883)
Q Consensus       619 L~ls~N~  625 (883)
                      |+++.+.
T Consensus       117 L~L~~n~  123 (426)
T PRK15386        117 LEIKGSA  123 (426)
T ss_pred             EEeCCCC
Confidence            6665543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.81  E-value=1.7e-06  Score=90.41  Aligned_cols=211  Identities=19%  Similarity=0.062  Sum_probs=105.0

Q ss_pred             hhcCCCCCCEEEccCCc-CCCCCCccc-cCCCCCCEEEccCC-ccccccChhhhcCCCCCCEEeccCCc-CccccChHhh
Q 041908          174 RICELKNLVELNLSWNK-LDGSLPQCL-SNLTYLRVLDLTSN-QLSGNLPISVFANLTSLEYLSLSGNN-FQGSFSLSVL  249 (883)
Q Consensus       174 ~l~~l~~L~~L~Ls~n~-l~~~~p~~l-~~l~~L~~L~Ls~n-~l~~~ip~~~~~~l~~L~~L~L~~n~-l~g~~~~~~l  249 (883)
                      ....++++++|++.++. ++...-..+ ..+++|++|++..| .++...-......+++|++|+++.+. ++|.--....
T Consensus       159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~  238 (483)
T KOG4341|consen  159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ  238 (483)
T ss_pred             HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence            34567888888888775 222111122 35788888888885 34422221234567888888888764 3331111345


Q ss_pred             hcCCCCcEEEccCcccccCC---CCCCCCccceEEEcccCcCCccCc--hhhhcCCCCCEEEccCCCC-cCCcchHHHhc
Q 041908          250 ANHSRLEVLQISRLQIETEN---FPWLPRFQLKVLNLRRCNISGTIP--SFLQYQYDLRYIDLSHNNL-AGTFPTWLLQN  323 (883)
Q Consensus       250 ~~l~~L~~L~L~~~~~~~~~---~~~~~~~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~Ls~n~l-~~~~p~~~~~~  323 (883)
                      .+++.++.+.+.+|.-....   .....+..+.++++..|.......  ..-..+..|+.++.+++.. +...-..+.++
T Consensus       239 rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~  318 (483)
T KOG4341|consen  239 RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH  318 (483)
T ss_pred             ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC
Confidence            55666666655544321110   011122234555555654321111  1123466777777777543 32333345556


Q ss_pred             CCCCcEEEcccccc-cc--cccCCCCCCCccEEEccCCcccccc-chhhhcCCCCCcEEeCCCCc
Q 041908          324 NTKLEFLFLFNNFL-KG--LLHLPDSKRDLLHLVISNNNFIGML-PDNFGMILPELVYLDMSQNS  384 (883)
Q Consensus       324 l~~L~~L~L~~n~l-~~--~~~~~~~~~~L~~L~ls~n~l~~~~-p~~~~~~l~~L~~L~L~~n~  384 (883)
                      ..+|++|.++.++- +.  +..+..+++.|+.+++..+...... -......++.|+.+.++.|.
T Consensus       319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce  383 (483)
T KOG4341|consen  319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCE  383 (483)
T ss_pred             CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhh
Confidence            77777777776652 11  1112234555555555555432211 11122234555555555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.76  E-value=9.8e-06  Score=94.84  Aligned_cols=148  Identities=26%  Similarity=0.340  Sum_probs=71.3

Q ss_pred             CCCCEEECCCCCC-CCCCchhhcC-CCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhc
Q 041908           88 KQLKILNIGFNSF-SESLVPLLTS-LTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLN  165 (883)
Q Consensus        88 ~~L~~L~Ls~n~l-~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~  165 (883)
                      .+|++||+++... ....|..++. +|+|++|.+++-.+....+- ....++++|+.||+|+.+++..            
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~-~lc~sFpNL~sLDIS~TnI~nl------------  188 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFS-QLCASFPNLRSLDISGTNISNL------------  188 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHH-HHhhccCccceeecCCCCccCc------------
Confidence            3566666666442 2223344433 56666666666554332111 1334566666666666655332            


Q ss_pred             ccccchhhhhcCCCCCCEEEccCCcCCC-CCCccccCCCCCCEEEccCCccccccC------hhhhcCCCCCCEEeccCC
Q 041908          166 NKCREMNARICELKNLVELNLSWNKLDG-SLPQCLSNLTYLRVLDLTSNQLSGNLP------ISVFANLTSLEYLSLSGN  238 (883)
Q Consensus       166 n~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~ip------~~~~~~l~~L~~L~L~~n  238 (883)
                             ..++++++|+.|.+.+=.+.. ..-..+.+|++|++||+|..... ..+      .+.-..||+|+.||.+++
T Consensus       189 -------~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgT  260 (699)
T KOG3665|consen  189 -------SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGT  260 (699)
T ss_pred             -------HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCc
Confidence                   345556666666555544432 11123455666666666654432 111      011123556666666665


Q ss_pred             cCccccChHhhhcCCCCc
Q 041908          239 NFQGSFSLSVLANHSRLE  256 (883)
Q Consensus       239 ~l~g~~~~~~l~~l~~L~  256 (883)
                      .+.+.+-...+...++|+
T Consensus       261 di~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  261 DINEEILEELLNSHPNLQ  278 (699)
T ss_pred             chhHHHHHHHHHhCccHh
Confidence            555433333333333333

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.67  E-value=1.2e-05  Score=93.99  Aligned_cols=206  Identities=24%  Similarity=0.284  Sum_probs=110.5

Q ss_pred             CCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCC-C--C----------CCCCCCCEEECCCCCCCCccc
Q 041908           89 QLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMK-V--L----------PNLRNLEVLDLSGNGLIGSLT  155 (883)
Q Consensus        89 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~-~--l----------~~l~~L~~L~Ls~n~l~~~~~  155 (883)
                      +++..++.+.......-..+.... |+.|.|.+-.....+.-.. .  +          ..-.+|++||+++.....   
T Consensus        61 ~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s---  136 (699)
T KOG3665|consen   61 NLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFS---  136 (699)
T ss_pred             eeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhh---
Confidence            445555555544444444444444 7777776543322100000 0  0          012567777777754321   


Q ss_pred             cccccchhhcccccchhhhhcC-CCCCCEEEccCCcCCCC-CCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEE
Q 041908          156 MQGEKLELLNNKCREMNARICE-LKNLVELNLSWNKLDGS-LPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYL  233 (883)
Q Consensus       156 ~~l~~L~~~~n~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L  233 (883)
                                   .+.+..++. +|+|+.|.+++-.+... .-.-..++++|..||+|+.+++ .+  ..+++|++|+.|
T Consensus       137 -------------~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl--~GIS~LknLq~L  200 (699)
T KOG3665|consen  137 -------------NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL--SGISRLKNLQVL  200 (699)
T ss_pred             -------------ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc--HHHhccccHHHH
Confidence                         112244443 77788887777655422 1223456777888888887777 44  367777777777


Q ss_pred             eccCCcCccccChHhhhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCc
Q 041908          234 SLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLA  313 (883)
Q Consensus       234 ~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  313 (883)
                      .+.+-.+...-....+-++++|++||+|........                 .+....-+.-..+++|+.||.|++.+.
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-----------------~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-----------------KIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccch-----------------HHHHHHHHhcccCccccEEecCCcchh
Confidence            777766654333445666777777777654432211                 000000111224678888888887777


Q ss_pred             CCcchHHHhcCCCCcEEE
Q 041908          314 GTFPTWLLQNNTKLEFLF  331 (883)
Q Consensus       314 ~~~p~~~~~~l~~L~~L~  331 (883)
                      +.+-+.+...-++|+.+.
T Consensus       264 ~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  264 EEILEELLNSHPNLQQIA  281 (699)
T ss_pred             HHHHHHHHHhCccHhhhh
Confidence            666555554455555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.52  E-value=0.00026  Score=76.38  Aligned_cols=136  Identities=18%  Similarity=0.183  Sum_probs=85.2

Q ss_pred             ccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCC-cCCCCCCccccCCCcc
Q 041908          442 YMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRN-SLEGDVSVPLSNLQVA  520 (883)
Q Consensus       442 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L  520 (883)
                      +..+.+++.|++++|.++. +|.   -.++|+.|.+++|.-...+|..+  .++|++|++++| .+. .+|.      +|
T Consensus        48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------cc
Confidence            3456889999999998774 452   23469999998865544667655  358899999988 443 4443      46


Q ss_pred             cEEecCCCcCc--CccccccccCCCcCeeecccCccc--cccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEE
Q 041908          521 RILDISENKLY--GPLEFSFNHSSSLWHLFLHNNSLN--GSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALL  596 (883)
Q Consensus       521 ~~L~Ls~n~l~--~~~~~~~~~~~~L~~L~L~~n~l~--~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  596 (883)
                      +.|+++.+...  +.+|      ++|+.|.+.+++..  ..+|..  -.++|++|++++|... ..|..+.  .+|+.|+
T Consensus       115 e~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~  183 (426)
T PRK15386        115 RSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSIT  183 (426)
T ss_pred             ceEEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEE
Confidence            77777766542  2233      35677777543311  011211  1257888998888765 3444333  5788888


Q ss_pred             ccCCc
Q 041908          597 LRGNN  601 (883)
Q Consensus       597 L~~N~  601 (883)
                      ++.|.
T Consensus       184 ls~n~  188 (426)
T PRK15386        184 LHIEQ  188 (426)
T ss_pred             ecccc
Confidence            87763

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.38  E-value=0.00024  Score=67.48  Aligned_cols=87  Identities=30%  Similarity=0.392  Sum_probs=40.2

Q ss_pred             hcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccC-hhhhcCCCCCCEEeccCCcCccc--cChHhhhc
Q 041908          175 ICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLP-ISVFANLTSLEYLSLSGNNFQGS--FSLSVLAN  251 (883)
Q Consensus       175 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip-~~~~~~l~~L~~L~L~~n~l~g~--~~~~~l~~  251 (883)
                      +..++.|..|.|++|+|+.+-|.--.-+++|+.|.|.+|.+. .+. ...+..++.|++|.+-+|..+..  .-...+..
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~k  138 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYK  138 (233)
T ss_pred             CCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEe
Confidence            444555555555555555333332233445555555555544 111 11344555566666655554411  11123444


Q ss_pred             CCCCcEEEccC
Q 041908          252 HSRLEVLQISR  262 (883)
Q Consensus       252 l~~L~~L~L~~  262 (883)
                      +++|+.||..+
T Consensus       139 lp~l~~LDF~k  149 (233)
T KOG1644|consen  139 LPSLRTLDFQK  149 (233)
T ss_pred             cCcceEeehhh
Confidence            55555555443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.35  E-value=1.5e-05  Score=83.40  Aligned_cols=38  Identities=24%  Similarity=0.136  Sum_probs=20.0

Q ss_pred             cCCCcCeeecccCccc-cccchhhhcCCCCCEEeccCCc
Q 041908          540 HSSSLWHLFLHNNSLN-GSIPSALFQSSQLMTLDLRDNE  577 (883)
Q Consensus       540 ~~~~L~~L~L~~n~l~-~~~p~~~~~~~~L~~L~Ls~N~  577 (883)
                      ....|+.+.|+++..+ ...-+.+..+++|+.+++-.++
T Consensus       399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             cccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            3445555666665532 2223344556666666666654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.29  E-value=0.00043  Score=65.84  Aligned_cols=87  Identities=26%  Similarity=0.302  Sum_probs=59.2

Q ss_pred             CCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcCCCCcE
Q 041908          178 LKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEV  257 (883)
Q Consensus       178 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~  257 (883)
                      +.+...+||++|.+..  -+.|..++.|.+|.+++|+|+ .|....-.-+++|+.|.|.+|++..--...-+..+++|+.
T Consensus        41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             ccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence            3466788888888752  234777888888888888888 5553444556778888888888763333344666667777


Q ss_pred             EEccCccccc
Q 041908          258 LQISRLQIET  267 (883)
Q Consensus       258 L~L~~~~~~~  267 (883)
                      |.+-+|+++.
T Consensus       118 Ltll~Npv~~  127 (233)
T KOG1644|consen  118 LTLLGNPVEH  127 (233)
T ss_pred             eeecCCchhc
Confidence            6666665543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.98  E-value=0.0012  Score=60.77  Aligned_cols=8  Identities=13%  Similarity=0.136  Sum_probs=2.3

Q ss_pred             CcCeeecc
Q 041908          543 SLWHLFLH  550 (883)
Q Consensus       543 ~L~~L~L~  550 (883)
                      .++.+.+.
T Consensus       104 ~l~~i~~~  111 (129)
T PF13306_consen  104 NLKEINIP  111 (129)
T ss_dssp             T--EEE-T
T ss_pred             CceEEEEC
Confidence            44444444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.94  E-value=0.00056  Score=67.99  Aligned_cols=87  Identities=31%  Similarity=0.340  Sum_probs=49.2

Q ss_pred             hhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCC--CCCCccccccccchhhcccccchhhhhcCCCCCCEE
Q 041908          107 LLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGN--GLIGSLTMQGEKLELLNNKCREMNARICELKNLVEL  184 (883)
Q Consensus       107 ~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n--~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L  184 (883)
                      ..-.+..|+.|.+.+..++..    ..+..|++|+.|++|.|  +..+.++                 .....+++|++|
T Consensus        38 l~d~~~~le~ls~~n~gltt~----~~~P~Lp~LkkL~lsdn~~~~~~~l~-----------------vl~e~~P~l~~l   96 (260)
T KOG2739|consen   38 LTDEFVELELLSVINVGLTTL----TNFPKLPKLKKLELSDNYRRVSGGLE-----------------VLAEKAPNLKVL   96 (260)
T ss_pred             ccccccchhhhhhhccceeec----ccCCCcchhhhhcccCCcccccccce-----------------ehhhhCCceeEE
Confidence            334445555566666655432    35666777777777777  4433332                 233445777777


Q ss_pred             EccCCcCCCCCCcc---ccCCCCCCEEEccCCccc
Q 041908          185 NLSWNKLDGSLPQC---LSNLTYLRVLDLTSNQLS  216 (883)
Q Consensus       185 ~Ls~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~  216 (883)
                      +|+.|++..  ++.   +..+.+|..||+..|..+
T Consensus        97 ~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   97 NLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             eecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence            777777652  222   344555666666666544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.87  E-value=0.0024  Score=58.61  Aligned_cols=10  Identities=30%  Similarity=0.590  Sum_probs=3.8

Q ss_pred             CCCCCCEEEc
Q 041908          468 NAPSLHILDV  477 (883)
Q Consensus       468 ~l~~L~~L~l  477 (883)
                      .+++|+.+++
T Consensus        79 ~~~~l~~i~~   88 (129)
T PF13306_consen   79 NCTNLKNIDI   88 (129)
T ss_dssp             T-TTECEEEE
T ss_pred             cccccccccc
Confidence            3344444444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.53  E-value=0.0012  Score=65.74  Aligned_cols=104  Identities=25%  Similarity=0.305  Sum_probs=64.3

Q ss_pred             CCCCCCCEEECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCC--cCCCCCCccccCCCCCCEEEccC
Q 041908          135 PNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWN--KLDGSLPQCLSNLTYLRVLDLTS  212 (883)
Q Consensus       135 ~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~  212 (883)
                      ..+..|+.|.+.+..++..                   ..+..+++|++|.+|.|  ++.+.++....++++|++|++++
T Consensus        40 d~~~~le~ls~~n~gltt~-------------------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~  100 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL-------------------TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG  100 (260)
T ss_pred             ccccchhhhhhhccceeec-------------------ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC
Confidence            3455666666655555332                   44666788888888888  66666665566678888888888


Q ss_pred             Ccccc--ccChhhhcCCCCCCEEeccCCcCcccc--ChHhhhcCCCCcEEE
Q 041908          213 NQLSG--NLPISVFANLTSLEYLSLSGNNFQGSF--SLSVLANHSRLEVLQ  259 (883)
Q Consensus       213 n~l~~--~ip~~~~~~l~~L~~L~L~~n~l~g~~--~~~~l~~l~~L~~L~  259 (883)
                      |++..  +++  .+..+.+|..|++.+|..+..-  ....+.-+++|++|+
T Consensus       101 Nki~~lstl~--pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  101 NKIKDLSTLR--PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             Cccccccccc--hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            87761  222  3556667778888777655311  112344455555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.91  E-value=0.0014  Score=75.62  Aligned_cols=36  Identities=22%  Similarity=-0.052  Sum_probs=16.1

Q ss_pred             CCCCCEEEccCCCCcCCc-chHHHhcCCCCcEEEccc
Q 041908          299 QYDLRYIDLSHNNLAGTF-PTWLLQNNTKLEFLFLFN  334 (883)
Q Consensus       299 l~~L~~L~Ls~n~l~~~~-p~~~~~~l~~L~~L~L~~  334 (883)
                      ++.|+.+.+.++.-.... -..+...++.|+.|++++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            456666666555322111 112223455555555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.82  E-value=0.00046  Score=68.66  Aligned_cols=84  Identities=27%  Similarity=0.260  Sum_probs=61.6

Q ss_pred             CCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcCCCCcE
Q 041908          178 LKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEV  257 (883)
Q Consensus       178 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~  257 (883)
                      +.+.+.|++-+|.++.+  .-..+++.|++|.||-|.|+ ++.  .+..|++|++|+|..|.|...-....+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            55677788888887743  23457888888888888888 554  57888888888888888874434456777777877


Q ss_pred             EEccCcccc
Q 041908          258 LQISRLQIE  266 (883)
Q Consensus       258 L~L~~~~~~  266 (883)
                      |.|..|...
T Consensus        93 LWL~ENPCc  101 (388)
T KOG2123|consen   93 LWLDENPCC  101 (388)
T ss_pred             HhhccCCcc
Confidence            777766543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.78  E-value=0.0033  Score=37.37  Aligned_cols=18  Identities=44%  Similarity=0.639  Sum_probs=7.9

Q ss_pred             CCEEECCCCcccccCCccc
Q 041908          757 IESMDLSYNKLRGQIPLEL  775 (883)
Q Consensus       757 L~~LdLs~N~Lsg~ip~~l  775 (883)
                      |++|||++|+++ .||.++
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            344444444444 344433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.67  E-value=0.004  Score=37.02  Aligned_cols=19  Identities=53%  Similarity=0.732  Sum_probs=8.9

Q ss_pred             ccEEEccCCcCcccCccccc
Q 041908          709 MTGLDLSSNELTGEIPSAIG  728 (883)
Q Consensus       709 L~~LdLs~N~l~g~ip~~l~  728 (883)
                      |++|||++|+|+ .||.+|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            344555555554 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.50  E-value=0.001  Score=66.18  Aligned_cols=82  Identities=30%  Similarity=0.273  Sum_probs=60.3

Q ss_pred             hcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccC-hhhhcCCCCCCEEeccCCcCccccCh----Hhh
Q 041908          175 ICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLP-ISVFANLTSLEYLSLSGNNFQGSFSL----SVL  249 (883)
Q Consensus       175 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip-~~~~~~l~~L~~L~L~~n~l~g~~~~----~~l  249 (883)
                      ..+++.|+.|.||-|+|+..-  .+..|++|++|+|..|.|. .+. ...+.++++|+.|.|..|.-.|..+.    ..+
T Consensus        37 c~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL  113 (388)
T KOG2123|consen   37 CEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL  113 (388)
T ss_pred             HHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence            456888888999988887543  3778888999999998887 443 23567888899999988876654432    356


Q ss_pred             hcCCCCcEEE
Q 041908          250 ANHSRLEVLQ  259 (883)
Q Consensus       250 ~~l~~L~~L~  259 (883)
                      .-+++|+.||
T Consensus       114 R~LPnLkKLD  123 (388)
T KOG2123|consen  114 RVLPNLKKLD  123 (388)
T ss_pred             HHcccchhcc
Confidence            6777777665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.41  E-value=0.0029  Score=72.97  Aligned_cols=15  Identities=20%  Similarity=0.087  Sum_probs=8.4

Q ss_pred             ccCCCcCeeecccCc
Q 041908          539 NHSSSLWHLFLHNNS  553 (883)
Q Consensus       539 ~~~~~L~~L~L~~n~  553 (883)
                      ..++.++.+.+..+.
T Consensus       359 ~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  359 RSCPKLTDLSLSYCG  373 (482)
T ss_pred             hcCCCcchhhhhhhh
Confidence            445555555555555

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.65  E-value=0.0013  Score=73.95  Aligned_cols=87  Identities=26%  Similarity=0.265  Sum_probs=47.9

Q ss_pred             CCCcCeeecccCcccccc----chhhhcCCC-CCEEeccCCcCCcc----CCccccCC-CCCcEEEccCCcccccCc---
Q 041908          541 SSSLWHLFLHNNSLNGSI----PSALFQSSQ-LMTLDLRDNEFSGN----IPPLINED-SNLRALLLRGNNLQGNIP---  607 (883)
Q Consensus       541 ~~~L~~L~L~~n~l~~~~----p~~~~~~~~-L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~L~~N~l~g~~p---  607 (883)
                      ..++++|++++|.++...    ...+...++ +..+++.+|++.+.    ....+..+ ..++.++++.|.|+..-.   
T Consensus       203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            445666666666655221    122333334 55567777766643    12233333 556777777777764433   


Q ss_pred             -hhhcCCCCCCEEEcCCCcCC
Q 041908          608 -QQLCHLRKIAIVDISYNLLD  627 (883)
Q Consensus       608 -~~l~~l~~L~~L~ls~N~l~  627 (883)
                       ..+..++.++.+.++.|.+.
T Consensus       283 ~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  283 AEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHhhhHHHHHhhcccCccc
Confidence             33445667777777777665

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.15  E-value=0.0086  Score=58.28  Aligned_cols=84  Identities=21%  Similarity=0.212  Sum_probs=69.4

Q ss_pred             cccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEE
Q 041908          706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFN  785 (883)
Q Consensus       706 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~  785 (883)
                      +...+.||+|.|++. ..-..|.-++.|..||+|.|++. ..|..++.+..+..+++..|.++ ..|.++..++.+++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            456678999999887 55566777888888999999887 77888898888999998888887 6788888888898888


Q ss_pred             ccCCcCc
Q 041908          786 VSYNDLS  792 (883)
Q Consensus       786 ls~N~l~  792 (883)
                      +-.|.|.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            8888764

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.38  E-value=0.13  Score=28.29  Aligned_cols=13  Identities=54%  Similarity=0.851  Sum_probs=4.5

Q ss_pred             CCCEEEccCCccc
Q 041908          204 YLRVLDLTSNQLS  216 (883)
Q Consensus       204 ~L~~L~Ls~n~l~  216 (883)
                      +|++|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.98  E-value=0.0032  Score=70.90  Aligned_cols=187  Identities=22%  Similarity=0.169  Sum_probs=97.3

Q ss_pred             cccEEeccCCcccCccchhH---hhCCCCCCEEEccCcccCCcCcccc----cCC-CCCCeEEccCcccCccccccccCC
Q 041908          398 RLLFLDLSSNNFSGELPKQF---LTGCVSLAFMNVSHNYFGGQIFPKY----MSM-TQLAWLYLNDNQFTGRLEEGLLNA  469 (883)
Q Consensus       398 ~L~~L~Ls~n~l~~~ip~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~~~~~~~~l  469 (883)
                      .+..+++.+|.+.......+   +...+.|+.|+++.|.+.+.-...+    ... ..+++|++..|.++..-.      
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~------  161 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGA------  161 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccch------
Confidence            36777888887764433222   2345566666777766653221111    111 234444444444442211      


Q ss_pred             CCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCC----CCCc----cccCCCcccEEecCCCcCcCccc----cc
Q 041908          470 PSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEG----DVSV----PLSNLQVARILDISENKLYGPLE----FS  537 (883)
Q Consensus       470 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~----~l~~l~~L~~L~Ls~n~l~~~~~----~~  537 (883)
                                    +.+.+.+.....++.++++.|.+..    .++.    .+....++++|++++|.++...-    ..
T Consensus       162 --------------~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~  227 (478)
T KOG4308|consen  162 --------------APLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEV  227 (478)
T ss_pred             --------------HHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHH
Confidence                          0222333334444444444444321    1111    12235566666776666552211    12


Q ss_pred             cccCCC-cCeeecccCccccc----cchhhhcC-CCCCEEeccCCcCCccCC----ccccCCCCCcEEEccCCcccc
Q 041908          538 FNHSSS-LWHLFLHNNSLNGS----IPSALFQS-SQLMTLDLRDNEFSGNIP----PLINEDSNLRALLLRGNNLQG  604 (883)
Q Consensus       538 ~~~~~~-L~~L~L~~n~l~~~----~p~~~~~~-~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~L~~N~l~g  604 (883)
                      +...+. +.++++..|++.+.    ..+.+..+ ..+++++++.|.|+..-.    ..+..++.++++.+++|.+..
T Consensus       228 l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  228 LASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            233334 66688888877643    23334444 567888888888876543    344566788888888888864

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.55  E-value=0.0052  Score=59.74  Aligned_cols=92  Identities=23%  Similarity=0.236  Sum_probs=58.3

Q ss_pred             CCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEE
Q 041908          129 KPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVL  208 (883)
Q Consensus       129 ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  208 (883)
                      +|...+.....-+.||++.|++...-                  ..+.-++.|..||++.|.+. ..|..++.+..++.+
T Consensus        33 ~~v~ei~~~kr~tvld~~s~r~vn~~------------------~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~   93 (326)
T KOG0473|consen   33 IPVREIASFKRVTVLDLSSNRLVNLG------------------KNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNA   93 (326)
T ss_pred             cchhhhhccceeeeehhhhhHHHhhc------------------cchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHH
Confidence            44445555666666666666552211                  23444566666777777665 567777777777777


Q ss_pred             EccCCccccccChhhhcCCCCCCEEeccCCcCc
Q 041908          209 DLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ  241 (883)
Q Consensus       209 ~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~  241 (883)
                      ++..|..+ ..| .+++..+.++++++-+|.+.
T Consensus        94 ~~~~n~~~-~~p-~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   94 ASHKNNHS-QQP-KSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             Hhhccchh-hCC-ccccccCCcchhhhccCcch
Confidence            77777766 667 56777777777777776654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.17  E-value=0.17  Score=27.86  Aligned_cols=12  Identities=58%  Similarity=0.778  Sum_probs=4.4

Q ss_pred             ccEEEccCCcCc
Q 041908          709 MTGLDLSSNELT  720 (883)
Q Consensus       709 L~~LdLs~N~l~  720 (883)
                      |+.|||++|+|+
T Consensus         3 L~~L~l~~n~L~   14 (17)
T PF13504_consen    3 LRTLDLSNNRLT   14 (17)
T ss_dssp             -SEEEETSS--S
T ss_pred             cCEEECCCCCCC
Confidence            444555555444

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.09  E-value=0.29  Score=30.30  Aligned_cols=21  Identities=57%  Similarity=0.805  Sum_probs=12.4

Q ss_pred             CCCCEEEccCCccccccChhhh
Q 041908          203 TYLRVLDLTSNQLSGNLPISVF  224 (883)
Q Consensus       203 ~~L~~L~Ls~n~l~~~ip~~~~  224 (883)
                      ++|++|+|++|+++ .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666666666666 5664443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.09  E-value=0.29  Score=30.30  Aligned_cols=21  Identities=57%  Similarity=0.805  Sum_probs=12.4

Q ss_pred             CCCCEEEccCCccccccChhhh
Q 041908          203 TYLRVLDLTSNQLSGNLPISVF  224 (883)
Q Consensus       203 ~~L~~L~Ls~n~l~~~ip~~~~  224 (883)
                      ++|++|+|++|+++ .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666666666666 5664443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.72  E-value=0.46  Score=29.40  Aligned_cols=13  Identities=38%  Similarity=0.580  Sum_probs=5.7

Q ss_pred             CCCEEECCCCccc
Q 041908          756 MIESMDLSYNKLR  768 (883)
Q Consensus       756 ~L~~LdLs~N~Ls  768 (883)
                      +|++|+|++|+|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.72  E-value=0.46  Score=29.40  Aligned_cols=13  Identities=38%  Similarity=0.580  Sum_probs=5.7

Q ss_pred             CCCEEECCCCccc
Q 041908          756 MIESMDLSYNKLR  768 (883)
Q Consensus       756 ~L~~LdLs~N~Ls  768 (883)
                      +|++|+|++|+|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.60  E-value=0.17  Score=30.64  Aligned_cols=15  Identities=33%  Similarity=0.565  Sum_probs=6.7

Q ss_pred             CCCCEEECCCCcccc
Q 041908          755 KMIESMDLSYNKLRG  769 (883)
Q Consensus       755 ~~L~~LdLs~N~Lsg  769 (883)
                      ++|++|||++|++++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            345555555555544

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	883
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		8e-44
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-14
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		9e-44
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-14
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-08
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-08
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		7e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  175 bits (444), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 183/651 (28%), Positives = 277/651 (42%), Gaps = 24/651 (3%)
Query: 181 LVELNLSWNKLDGSLPQ--CLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGN 238
           L  L+LS N L G +     L + + L+ L+++SN L     +S    L SLE L LS N
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 239 NFQGSFSLS-VLANH-SRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFL 296
           +  G+  +  VL++    L+ L IS  +I  +         L+ L++   N S  IP FL
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGD-VDVSRCVNLEFLDVSSNNFSTGIP-FL 219
Query: 297 QYQYDLRYIDLSHNNLAGTFPTWLLQXXXXXXXXXXXXXXXXXXXXXPDSKRDLLHLVIS 356
                L+++D+S N L+G F   +                       P   + L +L ++
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLA 277
Query: 357 NNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRXXXXXXXXXXXXGELPKQ 416
            N F G +PD        L  LD+S N F G++PP  G                GELP  
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 417 FLTGCVSLAFMNVSHNYFGGQIFPKYMSMT-QLAWLYLNDNQFTGRLEEGLLNAP--SLH 473
            L     L  +++S N F G++     +++  L  L L+ N F+G +   L   P  +L 
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Query: 474 ILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGP 533
            L + NN  +G++P  + N S L  L +S N L G +   L +L   R L +  N L G 
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 534 LEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSXXX 593
           +     +  +L  L L  N L G IPS L   + L  + L +N  +G IP  I       
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517
Query: 594 XXXXXXXXXXXXIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFG 653
                       IP +L   R +  +D++ NL +G+IP+       + + G     F+ G
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM-----FKQSGKIAANFIAG 572
Query: 654 YTLVVEHFPAISAYYNSTLNLI-FSGEDNRELRQRVEVKFMAKNRYESYKGGVLEY---- 708
              V      +    +   NL+ F G  + +L  R+  +         Y G         
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL-NRLSTRNPCNITSRVYGGHTSPTFDNN 631
Query: 709 --MTGLDLSSNELTGEIPSAIGYLQEXXXXXXXXXXXXGSIPRSFSNLKMIESMDLSYNK 766
             M  LD+S N L+G IP  IG +              GSIP    +L+ +  +DLS NK
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
Query: 767 LRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCG 817
           L G+IP  +S L  L   ++S N+LSGP P   QF  F  + +  N  LCG
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 156/396 (39%), Gaps = 33/396 (8%)
Query: 422 VSLAFMNVSHNYFGGQI--FPKYMSMTQLAWLYLNDN--QFTGRLEEGL-LNAPSLHILD 476
            SL  +++S N   G +       S + L +L ++ N   F G++  GL LN  SL +LD
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN--SLEVLD 157
Query: 477 VSNNMLSGQ-LPHWV--GNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGP 533
           +S N +SG  +  WV       L  L +S N + GDV V  S       LD+S N     
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTG 215
Query: 534 LEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSXXX 593
           + F     S+L HL +  N L+G    A+   ++L  L++  N+F G IPPL  +     
Sbjct: 216 IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKS--LQ 272
Query: 594 XXXXXXXXXXXXIPQQLC-HLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFV- 651
                       IP  L      +  +D+S N   G++P  F +           N F  
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332
Query: 652 ---FGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVL-- 706
                  L +     +   +N      FSGE    L               ++ G +L  
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNE-----FSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 707 ------EYMTGLDLSSNELTGEIPSAIGYLQEXXXXXXXXXXXXGSIPRSFSNLKMIESM 760
                   +  L L +N  TG+IP  +    E            G+IP S  +L  +  +
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 761 DLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTP 796
            L  N L G+IP EL  +  L    + +NDL+G  P
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  175 bits (444), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 183/651 (28%), Positives = 277/651 (42%), Gaps = 24/651 (3%)
Query: 181 LVELNLSWNKLDGSLPQ--CLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGN 238
           L  L+LS N L G +     L + + L+ L+++SN L     +S    L SLE L LS N
Sbjct: 99  LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 239 NFQGSFSLS-VLANH-SRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFL 296
           +  G+  +  VL++    L+ L IS  +I  +         L+ L++   N S  IP FL
Sbjct: 159 SISGANVVGWVLSDGCGELKHLAISGNKISGD-VDVSRCVNLEFLDVSSNNFSTGIP-FL 216
Query: 297 QYQYDLRYIDLSHNNLAGTFPTWLLQXXXXXXXXXXXXXXXXXXXXXPDSKRDLLHLVIS 356
                L+++D+S N L+G F   +                       P   + L +L ++
Sbjct: 217 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLA 274
Query: 357 NNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRXXXXXXXXXXXXGELPKQ 416
            N F G +PD        L  LD+S N F G++PP  G                GELP  
Sbjct: 275 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 334
Query: 417 FLTGCVSLAFMNVSHNYFGGQIFPKYMSMT-QLAWLYLNDNQFTGRLEEGLLNAP--SLH 473
            L     L  +++S N F G++     +++  L  L L+ N F+G +   L   P  +L 
Sbjct: 335 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 394
Query: 474 ILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGP 533
            L + NN  +G++P  + N S L  L +S N L G +   L +L   R L +  N L G 
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 534 LEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSXXX 593
           +     +  +L  L L  N L G IPS L   + L  + L +N  +G IP  I       
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 514
Query: 594 XXXXXXXXXXXXIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFG 653
                       IP +L   R +  +D++ NL +G+IP+       + + G     F+ G
Sbjct: 515 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM-----FKQSGKIAANFIAG 569
Query: 654 YTLVVEHFPAISAYYNSTLNLI-FSGEDNRELRQRVEVKFMAKNRYESYKGGVLEY---- 708
              V      +    +   NL+ F G  + +L  R+  +         Y G         
Sbjct: 570 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL-NRLSTRNPCNITSRVYGGHTSPTFDNN 628
Query: 709 --MTGLDLSSNELTGEIPSAIGYLQEXXXXXXXXXXXXGSIPRSFSNLKMIESMDLSYNK 766
             M  LD+S N L+G IP  IG +              GSIP    +L+ +  +DLS NK
Sbjct: 629 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 688
Query: 767 LRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCG 817
           L G+IP  +S L  L   ++S N+LSGP P   QF  F  + +  N  LCG
Sbjct: 689 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 739

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 76.6 bits (187), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 155/396 (39%), Gaps = 33/396 (8%)
Query: 422 VSLAFMNVSHNYFGGQI--FPKYMSMTQLAWLYLNDN--QFTGRLEEGL-LNAPSLHILD 476
            SL  +++S N   G +       S + L +L ++ N   F G++  GL LN  SL +LD
Sbjct: 97  ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN--SLEVLD 154
Query: 477 VSNNMLSGQ-LPHWV--GNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGP 533
           +S N +SG  +  WV       L  L +S N + GDV V  S       LD+S N     
Sbjct: 155 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTG 212
Query: 534 LEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSXXX 593
           + F     S+L HL +  N L+G    A+   ++L  L++  N+F G IPPL        
Sbjct: 213 IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQ 269
Query: 594 XXXXXXXXXXXXIPQQLC-HLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFV- 651
                       IP  L      +  +D+S N   G++P  F +           N F  
Sbjct: 270 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 329
Query: 652 ---FGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVL-- 706
                  L +     +   +N      FSGE    L               ++ G +L  
Sbjct: 330 ELPMDTLLKMRGLKVLDLSFNE-----FSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 707 ------EYMTGLDLSSNELTGEIPSAIGYLQEXXXXXXXXXXXXGSIPRSFSNLKMIESM 760
                   +  L L +N  TG+IP  +    E            G+IP S  +L  +  +
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 761 DLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTP 796
            L  N L G+IP EL  +  L    + +NDL+G  P
Sbjct: 445 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 480

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 111/283 (39%), Gaps = 47/283 (16%)
Query: 233 LSLSGNNFQGSFSL-SVLANHSRLEVLQISRLQ-IETENFPWLPRF-QLKVLNLRRCNIS 289
           L LSG N    + + S LAN   L  L I  +  +     P + +  QL  L +   N+S
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 290 GTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQXXXXXXXXXXXXXXXXXXXXXPDSKRD 349
           G IP FL     L  +D S+N L+GT P  +                         S  +
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSI------------------------SSLPN 150
Query: 350 LLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRXXXXXXXXXXX 409
           L+ +    N   G +PD++G        + +S+N   G IPP+                 
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA----------NLNLA 200
Query: 410 XGELPKQFLTGCVSLAF--------MNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGR 461
             +L +  L G  S+ F        ++++ N     +    +S   L  L L +N+  G 
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-KNLNGLDLRNNRIYGT 259
Query: 462 LEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRN 504
           L +GL     LH L+VS N L G++P   GN    DV   + N
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 94/249 (37%), Gaps = 36/249 (14%)
Query: 576 NEFSGNIPPLINEDSXXXXXXXXXXXXXXXIPQQLCHLRKIAIVDISYNLLDGSIP---S 632
           N   G IPP I + +               IP  L  ++ +  +D SYN L G++P   S
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 633 CFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNR-ELRQRVEVK 691
              N+     +G+  +G             AI   Y S   L  S   +R  L  ++   
Sbjct: 147 SLPNLVGITFDGNRISG-------------AIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 692 FMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGY---LQEXXXXXXXXXXXXGSIP 748
           F   N            +  +DLS N L G+     G     Q+            G + 
Sbjct: 194 FANLN------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241
Query: 749 RSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESN 808
            S    K +  +DL  N++ G +P  L++L +L   NVS+N+L G  P       FD S 
Sbjct: 242 LS----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA 297
Query: 809 YRGNLNLCG 817
           Y  N  LCG
Sbjct: 298 YANNKCLCG 306

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 435 GGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFS 494
           G ++ PK +    +  LYL+ NQFT   +E L N   L ++D+SNN +S        N +
Sbjct: 21  GLKVLPKGIPR-DVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMT 78
Query: 495 NLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSL 554
            L  L++S N L          L+  R+L +  N +    E +FN  S+L HL +  N L
Sbjct: 79  QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	883
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-74
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-72
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-57
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-47
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-66
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-64
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-58
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-55
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-39
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-32
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-60
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-53
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-44
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-59
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-54
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-54
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-49
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-34
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-31
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-47
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-44
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-40
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-44
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-44
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-30
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-29
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-27
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-24
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-20
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-17
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-14
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-11
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	6e-05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  568 bits (1467), Expect = 0.0
 Identities = 223/828 (26%), Positives = 345/828 (41%), Gaps = 81/828 (9%)

Query: 26  SCLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCSWERIKCNVTTANYNNNG 85
             L  E   L+  K  +           +L  W  +   + C+++ + C         + 
Sbjct: 8   QSLYREIHQLISFKDVLPD-------KNLLPDW--SSNKNPCTFDGVTCR--------DD 50

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDL 145
            +  + + +   N    ++   L SLT L SLFL  +++              +L  LDL
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG---FKCSASLTSLDL 107

Query: 146 SGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLP-QCLSNLTY 204
           S N L G +T                   +     L  LN+S N LD          L  
Sbjct: 108 SRNSLSGPVTTLTS---------------LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152

Query: 205 LRVLDLTSNQLSGNLPISVFA--NLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISR 262
           L VLDL++N +SG   +          L++L++SGN   G   +S   N           
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN----------- 201

Query: 263 LQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQ 322
                          L+ L++   N S  IP        L+++D+S N L+G F   +  
Sbjct: 202 ---------------LEFLDVSSNNFSTGIPFLGDCS-ALQHLDISGNKLSGDFSRAI-S 244

Query: 323 NNTKLEFLFLFNNFLKGLLHLPDSK-RDLLHLVISNNNFIGMLPDNFGMILPELVYLDMS 381
             T+L+ L + +N   G   +P    + L +L ++ N F G +PD        L  LD+S
Sbjct: 245 TCTELKLLNISSNQFVG--PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302

Query: 382 QNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPK 441
            N F G++PP  G    L  L LSSNNFSGELP   L     L  +++S N F G++   
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362

Query: 442 YMSMT-QLAWLYLNDNQFTGRL--EEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDV 498
             +++  L  L L+ N F+G +          +L  L + NN  +G++P  + N S L  
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422

Query: 499 LLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSI 558
           L +S N L G +   L +L   R L +  N L G +     +  +L  L L  N L G I
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482

Query: 559 PSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAI 618
           PS L   + L  + L +N  +G IP  I    NL  L L  N+  GNIP +L   R +  
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542

Query: 619 VDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSG 678
           +D++ NL +G+IP+        +      N       + +++       + +   L F G
Sbjct: 543 LDLNTNLFNGTIPAAMFKQSGKIAA----NFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598

Query: 679 EDNRELRQ--RVEVKFMAKNRY---ESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQEL 733
             + +L +        +    Y    S        M  LD+S N L+G IP  IG +  L
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658

Query: 734 HALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSG 793
             LNL HN +SGSIP    +L+ +  +DLS NKL G+IP  +S L  L   ++S N+LSG
Sbjct: 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718

Query: 794 PTPNTKQFANFDESNYRGNLNLCGPAVLKNCSTDLPPPPPMTPAEEDE 841
           P P   QF  F  + +  N  LCG  + +   ++         +    
Sbjct: 719 PIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  256 bits (656), Expect = 2e-74
 Identities = 124/571 (21%), Positives = 201/571 (35%), Gaps = 57/571 (9%)

Query: 85  GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLD 144
             L  LK+LN+  N  S+         T+LT L L  N++    K        +NL  LD
Sbjct: 70  QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI-QKIKN-NPFVKQKNLITLD 127

Query: 145 LSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLS--NL 202
           LS NGL         KL                L+NL EL LS NK+     + L     
Sbjct: 128 LSHNGL------SSTKLGTQVQ-----------LENLQELLLSNNKIQALKSEELDIFAN 170

Query: 203 TYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGS--FSLSVLANHSRLEVLQI 260
           + L+ L+L+SNQ+        F  +  L  L L+      S    L +   ++ +  L +
Sbjct: 171 SSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229

Query: 261 SRLQIETEN---FPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFP 317
           S  Q+ T +   F  L    L +L+L   N++        +   L Y  L +NN+   F 
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289

Query: 318 TWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVY 377
              L     + +L L  +                   IS  +   +   +F   L  L +
Sbjct: 290 HS-LHGLFNVRYLNLKRS--------------FTKQSISLASLPKIDDFSFQW-LKCLEH 333

Query: 378 LDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFS-GELPKQFLTGCV--SLAFMNVSHNYF 434
           L+M  N   G         + L +L LS++  S   L  +         L  +N++ N  
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 435 GGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLL-NAPSLHILDVSNNMLSGQLPHWVGNF 493
                  +  +  L  L L  N+    L         ++  + +S N       +     
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453

Query: 494 SNLDVLLMSRNSLEGDVSVP--LSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHN 551
            +L  L++ R +L+   S P     L+   ILD+S N +    +        L  L L +
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513

Query: 552 NSLN--------GSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQ 603
           N+L         G     L   S L  L+L  N F      +  +   L+ + L  NNL 
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573

Query: 604 GNIPQQLCHLRKIAIVDISYNLLDGSIPSCF 634
                   +   +  +++  NL+       F
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  249 bits (638), Expect = 6e-72
 Identities = 134/725 (18%), Positives = 225/725 (31%), Gaps = 106/725 (14%)

Query: 74  CNVTTANYNNN-------GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGV 126
            +   A+ ++             + +LN+  N          T  + LTSL +  N +  
Sbjct: 4   VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-- 61

Query: 127 GFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNL 186
                ++   L  L+VL+L  N L           +                 NL EL+L
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNEL------SQLSDKTFAF-----------CTNLTELHL 104

Query: 187 SWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSL 246
             N +             L  LDL+ N LS    +     L +L+ L LS N  Q     
Sbjct: 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQA---- 159

Query: 247 SVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYID 306
                             +++E         LK L L    I    P        L  + 
Sbjct: 160 ------------------LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201

Query: 307 LSHNNLAGTFPTWLLQ--NNTKLEFLFLFNNFLKGL-----LHLPDSKRDLLHLVISNNN 359
           L++  L  +    L     NT +  L L N+ L        L L  +   L  L +S NN
Sbjct: 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN--LTMLDLSYNN 259

Query: 360 FIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLT 419
              +  D+F   LP+L Y  +  N+ +     S+     + +L+L  +     +    L 
Sbjct: 260 LNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318

Query: 420 GCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSN 479
                +F                  +  L  L + DN   G          +L  L +SN
Sbjct: 319 KIDDFSFQW----------------LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362

Query: 480 NMLSGQLPHWVG----NFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLE 535
           +  S +            S L +L +++N +    S   S L    +LD+  N++   L 
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422

Query: 536 FS-FNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSG--NIPPLINEDSNL 592
              +    +++ ++L  N       ++      L  L LR        + P       NL
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482

Query: 593 RALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVF 652
             L L  NN+       L  L K+ I+D+ +N L          +W     G P      
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNL--------ARLWKHANPGGPIYFLKG 534

Query: 653 GYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVK--FMAKNRYESYKGGVLEYMT 710
              L +     ++   N      F        +   E+K   +  N   +    V     
Sbjct: 535 LSHLHI-----LNLESNG-----FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584

Query: 711 GL---DLSSNELTGEIPSAIGY-LQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNK 766
            L   +L  N +T       G   + L  L++  N    +       +  I     +  +
Sbjct: 585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPE 644

Query: 767 LRGQI 771
           L    
Sbjct: 645 LSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  209 bits (533), Expect = 2e-57
 Identities = 118/640 (18%), Positives = 197/640 (30%), Gaps = 110/640 (17%)

Query: 180 NLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNN 239
           +    + S  KL   +P  L   T + VL+LT NQL   LP + F   + L  L +  N 
Sbjct: 5   SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNT 60

Query: 240 FQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQ 299
                                    +E E    LP   LKVLNL+   +S        + 
Sbjct: 61  ISK----------------------LEPELCQKLP--MLKVLNLQHNELSQLSDKTFAFC 96

Query: 300 YDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGL-LHLPDSKRDLLHLVISNN 358
            +L  + L  N++              L  L L +N L    L       +L  L++SNN
Sbjct: 97  TNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155

Query: 359 NFIGMLPDNFG-MILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQF 417
               +  +         L  L++S N  +   P       RL  L L++      L ++ 
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

Query: 418 LTGC--VSLAFMNVSHNYFGGQIFP--KYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLH 473
                  S+  +++S++            +  T L  L L+ N       +     P L 
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 275

Query: 474 ILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGP 533
              +  N +     H +    N+  L + R+  +                 IS   L   
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK---------------QSISLASLPKI 320

Query: 534 LEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLR 593
            +FSF     L HL + +N + G   +       L  L L ++  S              
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT--------- 371

Query: 594 ALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFG 653
                           L  L      +++ N +                    F+     
Sbjct: 372 -----NETFVSLAHSPLHIL------NLTKNKISKIESDA-------------FSWLGHL 407

Query: 654 YTLVVEHFPAISAYYNSTLNLIFSGEDNRELR--QRVEVKFMAKNRYESYKGGVLEYMTG 711
             L +              N I      +E R  + +   +++ N+Y          +  
Sbjct: 408 EVLDLGL------------NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS 455

Query: 712 L---DLSSNELTG--EIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNK 766
           L    L    L      PS    L+ L  L+LS+N+++         L+ +E +DL +N 
Sbjct: 456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515

Query: 767 L--------RGQIPLELSELNYLAIFNVSYNDLSGPTPNT 798
           L         G     L  L++L I N+  N         
Sbjct: 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV 555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  179 bits (455), Expect = 3e-47
 Identities = 87/495 (17%), Positives = 165/495 (33%), Gaps = 38/495 (7%)

Query: 327 LEFLFLFNNFLKGLLHLPDS-KRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSF 385
            E     +     L  +PD    ++  L +++N    +   NF     +L  LD+  N+ 
Sbjct: 6   HEVADCSHL---KLTQVPDDLPTNITVLNLTHNQLRRLPAANFTR-YSQLTSLDVGFNTI 61

Query: 386 EGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSM 445
               P        L  L+L  N  S  L  +    C +L  +++  N         ++  
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 446 TQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSN--LDVLLMSR 503
             L  L L+ N  +       +   +L  L +SNN +       +  F+N  L  L +S 
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 504 NSLEGDVSVPLSNLQVARILDISENKLYGPLE---FSFNHSSSLWHLFLHNNSLNGSIPS 560
           N ++         +     L ++  +L   L         ++S+ +L L N+ L+ +  +
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 561 ALF--QSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAI 618
                + + L  LDL  N  +            L    L  NN+Q      L  L  +  
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300

Query: 619 VDISYNLLDGSIPSC-FTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFS 677
           +++  +    SI       I            F F +   +EH   ++   N    +  +
Sbjct: 301 LNLKRSFTKQSISLASLPKIDD----------FSFQWLKCLEH---LNMEDNDIPGIKSN 347

Query: 678 GEDN-RELRQ------RVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYL 730
                  L+          ++ +    + S     L     L+L+ N+++     A  +L
Sbjct: 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI---LNLTKNKISKIESDAFSWL 404

Query: 731 QELHALNLSHNHLSGSIPRS-FSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYN 789
             L  L+L  N +   +    +  L+ I  + LSYNK         + +  L    +   
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464

Query: 790 DLSGPTPNTKQFANF 804
            L     +   F   
Sbjct: 465 ALKNVDSSPSPFQPL 479

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  143 bits (362), Expect = 1e-35
 Identities = 68/380 (17%), Positives = 117/380 (30%), Gaps = 39/380 (10%)

Query: 446 TQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNS 505
           T +  L L  NQ              L  LDV  N +S   P        L VL +  N 
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 506 LEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS 565
           L        +       L +  N +       F    +L  L L +N L+ +      Q 
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144

Query: 566 SQLMTLDLRDNEFSGNIPPLIN--EDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISY 623
             L  L L +N+        ++   +S+L+ L L  N ++   P     + ++  + ++ 
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204

Query: 624 NLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNS---TLNLIFSGED 680
             L  S+                         L       +S   +    T N  F G  
Sbjct: 205 VQLGPSLTE------------------KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246

Query: 681 NRELRQRVEVKFMAKNRYESYKGGVLEYMTGL---DLSSNELTGEIPSAIGYLQELHALN 737
              L     +  ++ N           ++  L    L  N +      ++  L  +  LN
Sbjct: 247 WTNL----TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302

Query: 738 LSHN---------HLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSY 788
           L  +          L      SF  LK +E +++  N + G      + L  L   ++S 
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362

Query: 789 NDLSGPTPNTKQFANFDESN 808
           +  S  T   + F +   S 
Sbjct: 363 SFTSLRTLTNETFVSLAHSP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  117 bits (296), Expect = 2e-27
 Identities = 54/246 (21%), Positives = 93/246 (37%), Gaps = 9/246 (3%)

Query: 396 TVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLND 455
           TV     D S    + ++P    T   ++  +N++HN         +   +QL  L +  
Sbjct: 3   TVSHEVADCSHLKLT-QVPDDLPT---NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58

Query: 456 NQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLS 515
           N  +    E     P L +L++ +N LS          +NL  L +  NS++   + P  
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 516 NLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSAL--FQSSQLMTLDL 573
             +    LD+S N L      +     +L  L L NN +       L  F +S L  L+L
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 574 RDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLC---HLRKIAIVDISYNLLDGSI 630
             N+     P   +    L  L L    L  ++ ++LC       I  + +S + L  + 
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 631 PSCFTN 636
            + F  
Sbjct: 239 NTTFLG 244

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.0 bits (216), Expect = 1e-17
 Identities = 45/281 (16%), Positives = 87/281 (30%), Gaps = 47/281 (16%)

Query: 541 SSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGN 600
           + S       +  L   +P  L   + +  L+L  N+            S L +L +  N
Sbjct: 3   TVSHEVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 601 NLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEH 660
            +    P+    L  + ++++ +N L       F                     L    
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC----------------TNLTE-- 101

Query: 661 FPAISAYYNSTLNLIFSGEDNRELRQRVEVKF--MAKNRYESYKGGVLEYMTGL---DLS 715
              +    NS          N    ++  +    ++ N   S K G    +  L    LS
Sbjct: 102 ---LHLMSNS-----IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 153

Query: 716 SNELTGEIPSAIGYLQ--ELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIP- 772
           +N++       +       L  L LS N +    P  F  +  +  + L+  +L   +  
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE 213

Query: 773 -----LELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESN 808
                L  + +  L   ++S + LS  +  T  F     +N
Sbjct: 214 KLCLELANTSIRNL---SLSNSQLSTTSNTT--FLGLKWTN 249

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.4 bits (186), Expect = 4e-14
 Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 1/113 (0%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765
           L ++  L+L SN            L EL  ++L  N+L+      F+N   ++S++L  N
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594

Query: 766 KLRGQIPLELSE-LNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCG 817
            +              L   ++ +N       +   F N+    +     L  
Sbjct: 595 LITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSS 647

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.3 bits (157), Expect = 1e-10
 Identities = 24/101 (23%), Positives = 34/101 (33%), Gaps = 8/101 (7%)

Query: 706 LEYMTGLDLSSNELT--------GEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMI 757
           LE +  LDL  N L         G     +  L  LH LNL  N         F +L  +
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562

Query: 758 ESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNT 798
           + +DL  N L        +    L   N+  N ++      
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  232 bits (594), Expect = 2e-66
 Identities = 104/561 (18%), Positives = 178/561 (31%), Gaps = 62/561 (11%)

Query: 90  LKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNG 149
            K L++ FN           S   L  L L    +           +L +L  L L+GN 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG--AYQSLSHLSTLILTGNP 87

Query: 150 LIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLD 209
           +      Q   L   +            L +L +L      L       + +L  L+ L+
Sbjct: 88  I------QSLALGAFSG-----------LSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 210 LTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETEN 269
           +  N +        F+NLT+LE+L LS N  Q  +  + L    ++ +L +S        
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNLS-------- 181

Query: 270 FPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEF 329
                      L+L    ++   P   +    L  + L +N  +       +Q    LE 
Sbjct: 182 -----------LDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 330 LFLFNNFLKGLLHLPD---------SKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDM 380
             L     +   +L               +    ++  ++      +    L  +    +
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 381 SQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFP 440
              + E     S  +      L+L +  F    P   L     L F +            
Sbjct: 290 VSVTIERVKDFSYNF--GWQHLELVNCKFGQ-FPTLKLKSLKRLTFTSNKGG-----NAF 341

Query: 441 KYMSMTQLAWLYLNDNQ--FTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDV 498
             + +  L +L L+ N   F G   +      SL  LD+S N +   +         L+ 
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEH 400

Query: 499 LLMSRNSLEGDVSV-PLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGS 557
           L    ++L+         +L+    LDIS           FN  SSL  L +  NS   +
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 558 IPSALFQS-SQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKI 616
               +F     L  LDL   +     P   N  S+L+ L +  NN           L  +
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520

Query: 617 AIVDISYNLLDGSIPSCFTNI 637
            ++D S N +  S      + 
Sbjct: 521 QVLDYSLNHIMTSKKQELQHF 541

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  224 bits (574), Expect = 9e-64
 Identities = 107/547 (19%), Positives = 187/547 (34%), Gaps = 51/547 (9%)

Query: 85  GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLD 144
            SL  L  L +  N      +   + L+SL  L     NL    +    + +L+ L+ L+
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLEN-FPIGHLKTLKELN 130

Query: 145 LSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTY 204
           ++ N +                   ++      L NL  L+LS NK+       L  L  
Sbjct: 131 VAHNLIQSF----------------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 205 LRV----LDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQI 260
           + +    LDL+ N ++  +    F  +  L  L+L  N    +   + +   + LEV ++
Sbjct: 175 MPLLNLSLDLSLNPMNF-IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 261 SRLQIETEN---------FPWLPRFQLKVLNLRRCNIS-GTIPSFLQYQYDLRYIDLSHN 310
              +   E             L    ++   L   +     I        ++    L   
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

Query: 311 NLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGM 370
            +           N   + L L N             + L  L  ++N       +    
Sbjct: 293 TIERVKD---FSYNFGWQHLELVNCKFGQFP--TLKLKSLKRLTFTSNKGGNAFSEVD-- 345

Query: 371 ILPELVYLDMSQN--SFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMN 428
            LP L +LD+S+N  SF+G    S   T  L +LDLS N     +   FL G   L  ++
Sbjct: 346 -LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFL-GLEQLEHLD 402

Query: 429 VSHNYFGGQIFPKY-MSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQL- 486
             H+           +S+  L +L ++                SL +L ++ N       
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 487 PHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWH 546
           P       NL  L +S+  LE       ++L   ++L++S N  +    F +   +SL  
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522

Query: 547 LFLHNNSLNGSIPSALFQS-SQLMTLDLRDNEFSGNIP--PLINEDSNLRALLLRGNNLQ 603
           L    N +  S    L    S L  L+L  N+F+        +    + R LL+    ++
Sbjct: 523 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME 582

Query: 604 GNIPQQL 610
              P   
Sbjct: 583 CATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  209 bits (535), Expect = 2e-58
 Identities = 97/622 (15%), Positives = 186/622 (29%), Gaps = 85/622 (13%)

Query: 180 NLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNN 239
           +   L+LS+N L         +   L+VLDL+  ++   +    + +L+ L  L L+GN 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNP 87

Query: 240 FQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQ 299
            Q                       +    F  L    L+ L     N++      + + 
Sbjct: 88  IQS----------------------LALGAFSGLS--SLQKLVAVETNLASLENFPIGHL 123

Query: 300 YDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLL-----HLPDSKRDLLHLV 354
             L+ ++++HN +          N T LE L L +N ++ +       L       L L 
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 355 ISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYT-VRLLFLDLSSNNFSG-- 411
           +S N    + P  F  I   L  L +  N    ++  +       L    L    F    
Sbjct: 184 LSLNPMNFIQPGAFKEI--RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 412 ---ELPKQFLTGCVSLAFMNVSHNY---FGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEG 465
              +  K  L G  +L        Y   +   I   +  +T ++   L         +  
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

Query: 466 LLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDI 525
                    L++ N          + +   L        +   +V   L +L+    LD+
Sbjct: 302 YNF--GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD--LPSLEF---LDL 354

Query: 526 SENKLY--GPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIP 583
           S N L   G    S   ++SL +L L  N +   + S      QL  LD + +       
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 584 PLINED-SNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWME 642
             +     NL  L +   + +         L  + ++ ++ N    +           + 
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 643 EGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELR--QRVEVKFMAKNRYES 700
                                +                         ++V  M+ N + S
Sbjct: 474 F--------------------LDLSQCQ-----LEQLSPTAFNSLSSLQVLNMSHNNFFS 508

Query: 701 YKGGVLEYMTGL---DLSSNELTGEIPSAIGYLQE-LHALNLSHNHLSGSIPRS--FSNL 754
                 + +  L   D S N +       + +    L  LNL+ N  + +         +
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 568

Query: 755 KMIESMDLSYNKLRGQIPLELS 776
           K    + +   ++    P +  
Sbjct: 569 KDQRQLLVEVERMECATPSDKQ 590

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  154 bits (391), Expect = 2e-39
 Identities = 85/463 (18%), Positives = 160/463 (34%), Gaps = 37/463 (7%)

Query: 356 SNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPK 415
              NF   +PDN   +      LD+S N        S      L  LDLS          
Sbjct: 15  MELNFYK-IPDN---LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 416 QFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHIL 475
            +      L+ + ++ N         +  ++ L  L   +          + +  +L  L
Sbjct: 71  AY-QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 476 DVSNNML-SGQLPHWVGNFSNLDVLLMSRNSLEGDVS---VPLSNLQVARI-LDISENKL 530
           +V++N++ S +LP +  N +NL+ L +S N ++         L  + +  + LD+S N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 531 YGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS-SQLMTLDLRDNEFSGNIPPLINED 589
                 +F     L  L L NN  + ++     Q  + L    L   EF         + 
Sbjct: 190 NFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 590 SNLRAL---------LLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPW 640
           S L  L         L   +    +I      L  ++   +    ++      +   W  
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQH 308

Query: 641 MEEGD-PFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNR-- 697
           +E  +  F  F       ++       + ++     FS  D   L    E   +++N   
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRL----TFTSNKGGNAFSEVDLPSL----EFLDLSRNGLS 360

Query: 698 ---YESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRS-FSN 753
                S        +  LDLS N +   + S    L++L  L+  H++L      S F +
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419

Query: 754 LKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTP 796
           L+ +  +D+S+   R       + L+ L +  ++ N       
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  130 bits (329), Expect = 1e-31
 Identities = 83/446 (18%), Positives = 139/446 (31%), Gaps = 69/446 (15%)

Query: 372 LPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSH 431
           +P + Y  M  N +   IP ++ ++ +   LDLS N         F      L  +++S 
Sbjct: 7   VPNITYQCMELNFY--KIPDNLPFSTK--NLDLSFNPLRHLGSYSF-FSFPELQVLDLSR 61

Query: 432 NYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVG 491
                     Y S++ L+ L L  N              SL  L      L+      +G
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 492 NFSNLDVLLMSRNSLEG-DVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSL----WH 546
           +   L  L ++ N ++   +    SNL     LD+S NK+             +      
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 547 LFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPP-LINEDSNLRALLLRGN----- 600
           L L  N +N   P A F+  +L  L LR+N  S N+    I   + L    L        
Sbjct: 182 LDLSLNPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 601 -NLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVE 659
            NL+      L  L  + I +     LD  +              D FN      +  + 
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII----------DLFNCLTNVSSFSL- 289

Query: 660 HFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNEL 719
                    + T+  +     N   +                          L+L + + 
Sbjct: 290 --------VSVTIERVKDFSYNFGWQH-------------------------LELVNCKF 316

Query: 720 TGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKL--RGQIPLELSE 777
                  +  L+      L+     G    S  +L  +E +DLS N L  +G        
Sbjct: 317 GQFPTLKLKSLK-----RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 778 LNYLAIFNVSYNDLSGPTPNTKQFAN 803
              L   ++S+N +   + N      
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFLGLEQ 397

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.5 bits (194), Expect = 4e-15
 Identities = 33/146 (22%), Positives = 55/146 (37%), Gaps = 5/146 (3%)

Query: 492 NFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHN 551
              N+    M  N       +P +     + LD+S N L     +SF     L  L L  
Sbjct: 6   VVPNITYQCMELNFY----KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR 61

Query: 552 NSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLC 611
             +      A    S L TL L  N          +  S+L+ L+    NL       + 
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 612 HLRKIAIVDISYNLLDG-SIPSCFTN 636
           HL+ +  +++++NL+    +P  F+N
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSN 147

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.1 bits (185), Expect = 5e-14
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765
           L  +T LDLS  +L    P+A   L  L  LN+SHN+        +  L  ++ +D S N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528

Query: 766 KLRGQIPLELSELNY-LAIFNVSYNDLSG 793
            +      EL      LA  N++ ND + 
Sbjct: 529 HIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 74.3 bits (183), Expect = 8e-14
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 1/88 (1%)

Query: 712 LDLSSNELTGEI-PSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQ 770
           L ++ N       P     L+ L  L+LS   L    P +F++L  ++ +++S+N     
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 771 IPLELSELNYLAIFNVSYNDLSGPTPNT 798
                  LN L + + S N +       
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQE 537

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  224 bits (572), Expect = 4e-63
 Identities = 90/579 (15%), Positives = 189/579 (32%), Gaps = 74/579 (12%)

Query: 85  GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPM--KVLPNLRNLEV 142
            S  ++  L++     S  +   +  LT L  L L  +   V  +    K +    + E 
Sbjct: 78  NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 143 LDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNL 202
                     +      + +  +               L++  ++ +    S+ +     
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSD---------------LIKDCINSDPQQKSIKKSSRIT 182

Query: 203 TYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISR 262
                +   SN ++  +  +V   LT L    +  + F          N +     Q   
Sbjct: 183 LKDTQIGQLSNNITF-VSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240

Query: 263 LQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQ 322
             ++ +N        L  + +  C     +P+FL+   +++ I+++ N            
Sbjct: 241 EDLKWDNLK-----DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG---------- 285

Query: 323 NNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFI-GMLPDNFGMILPELVYLDMS 381
                E L      L            +  + I  NN     +  +    + +L  L+  
Sbjct: 286 --ISGEQLKDDWQALADAPVG----EKIQIIYIGYNNLKTFPVETSLQK-MKKLGMLECL 338

Query: 382 QNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPK 441
            N  EG   P+ G  ++L  L+L+ N  +  +P  F      +  ++ +HN       P 
Sbjct: 339 YNQLEG-KLPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKY--IPN 394

Query: 442 YM---SMTQLAWLYLNDNQFTG-------RLEEGLLNAPSLHILDVSNNMLSGQLPHWVG 491
                S++ ++ +  + N+           L+       ++  +++SNN +S        
Sbjct: 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454

Query: 492 NFSNLDVLLMSRNSLEG-------DVSVPLSNLQVARILDISENKLYG-PLEFSFNHSSS 543
             S L  + +  N L         D +    N  +   +D+  NKL     +F       
Sbjct: 455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY 514

Query: 544 LWHLFLHNNSLNGSIPSALFQSSQLMTLDLRD------NEFSGNIPPLINEDSNLRALLL 597
           L  + L  NS +   P+    SS L    +R+      N      P  I    +L  L +
Sbjct: 515 LVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573

Query: 598 RGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTN 636
             N+++  + +++     I+++DI  N       S    
Sbjct: 574 GSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCP 609

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  202 bits (516), Expect = 1e-55
 Identities = 75/542 (13%), Positives = 161/542 (29%), Gaps = 94/542 (17%)

Query: 84  NGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLP----NLRN 139
                 L    I  +   +S+          T +    NN+         +      L  
Sbjct: 155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-------VSKAVMRLTK 207

Query: 140 LEVLDLSGNGLIGSLTMQGEKLELL--NNKCREMNARICELKNLVELNLSWNKLDGSLPQ 197
           L    +  +  +     +  + E      + +  + +   LK+L ++ +        LP 
Sbjct: 208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT 267

Query: 198 CLSNLTYLRVLDLTSNQLSGNLPI-------SVFANLTSLEYLSLSGNNFQGSFSLSVLA 250
            L  L  ++++++  N+      +       +       ++ + +  NN +     + L 
Sbjct: 268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ 327

Query: 251 NHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHN 310
                                     +L +L      + G +P+F   +  L  ++L++N
Sbjct: 328 KMK-----------------------KLGMLECLYNQLEGKLPAFGS-EIKLASLNLAYN 363

Query: 311 NLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKR--DLLHLVISNNNFIGMLPDNF 368
            +    P        ++E L   +N LK + ++ D+K    +  +  S N    +   NF
Sbjct: 364 QITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422

Query: 369 GMILPE------LVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCV 422
             + P       +  +++S N               L  ++L  N  +  +PK  L    
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKD-- 479

Query: 423 SLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEE-GLLNAPSLHILDVSNNM 481
                              + +   L  + L  N+ T   ++      P L  +D+S N 
Sbjct: 480 ---------------ENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS 524

Query: 482 LSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHS 541
            S   P    N S L    +                      D   N+            
Sbjct: 525 FSK-FPTQPLNSSTLKGFGIRNQ------------------RDAQGNRTLREWPEGITLC 565

Query: 542 SSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNN 601
            SL  L + +N +   +   +  +  +  LD++DN         +         +L  + 
Sbjct: 566 PSLTQLQIGSNDIR-KVNEKITPN--ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

Query: 602 LQ 603
            Q
Sbjct: 623 TQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  155 bits (394), Expect = 1e-39
 Identities = 61/477 (12%), Positives = 134/477 (28%), Gaps = 80/477 (16%)

Query: 345 DSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEG----SIPPSMGYTVRLL 400
           +S   +  L +      G +PD  G  L EL  L +  +  +       P  +   +   
Sbjct: 78  NSNGRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 401 FLDLSSNNFSGELPKQF-LTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFT 459
                  ++               L    ++ +     I        +   +    N  T
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 460 GRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQV 519
             + + ++    L    + N+    +         N +              +   NL+ 
Sbjct: 197 F-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWDNLKD 250

Query: 520 ARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSL--------NGSIPSALFQSSQLMTL 571
              +++        L         +  + +  N          +    +      ++  +
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310

Query: 572 DLRDNEF-SGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSI 630
            +  N   +  +   + +   L  L    N L+G +P       K+A ++++YN +   I
Sbjct: 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-I 368

Query: 631 PSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEV 690
           P+ F      +E                     +S  +N  L  I +  D + +      
Sbjct: 369 PANFCGFTEQVEN--------------------LSFAHNK-LKYIPNIFDAKSVSV---- 403

Query: 691 KFMAKNRYESYKGGVLEYMTGLDLSSNELTG-------EIPSAIGYLQELHALNLSHNHL 743
                             M+ +D S NE+          +         + ++NLS+N +
Sbjct: 404 ------------------MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445

Query: 744 SGSIPRSFSNLKMIESMDLSYNKLRG-------QIPLELSELNYLAIFNVSYNDLSG 793
           S      FS    + S++L  N L                    L   ++ +N L+ 
Sbjct: 446 SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  131 bits (331), Expect = 8e-32
 Identities = 45/382 (11%), Positives = 129/382 (33%), Gaps = 66/382 (17%)

Query: 444 SMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQ----LPHWVGNFSNLDVL 499
           S  ++  L L     +GR+ + +     L +L + ++          P  +    + +  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 500 LMSRNSLEGDVSVPLSNLQVARI--LDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGS 557
              R   +            + +    I+ +     ++ S   +     +   +N++   
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TF 197

Query: 558 IPSALFQSSQLMTLDLRDNEFSG-------------------NIPPLINEDSNLRALLLR 598
           +  A+ + ++L    + ++ F                           +   +L  + + 
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257

Query: 599 GNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVV 658
                  +P  L  L ++ +++++ N           +     ++         G  + +
Sbjct: 258 NCPNLTKLPTFLKALPEMQLINVACNRG--------ISGEQLKDDWQALADAPVGEKIQI 309

Query: 659 EHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNE 718
                I   YN+    + +      L++                   ++ +  L+   N+
Sbjct: 310 -----IYIGYNN----LKTFPVETSLQK-------------------MKKLGMLECLYNQ 341

Query: 719 LTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIP--LELS 776
           L G++P+  G   +L +LNL++N ++          + +E++  ++NKL+  IP   +  
Sbjct: 342 LEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAK 399

Query: 777 ELNYLAIFNVSYNDLSGPTPNT 798
            ++ ++  + SYN++       
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKN 421

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  110 bits (278), Expect = 3e-25
 Identities = 33/336 (9%), Positives = 84/336 (25%), Gaps = 66/336 (19%)

Query: 476 DVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLE 535
           +   +M   Q    + +   +  L +      G V   +  L    +L +  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 536 FSFNHS----SSLWHLFLHNNSLNGSIPSALF--QSSQLMTLDLRDNEFSGNIPPLINED 589
                      S             +          S L+   +  +    +I       
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 590 SNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNG 649
                +    NN+   + + +  L K+    +  +                         
Sbjct: 183 LKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN------------ 229

Query: 650 FVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYM 709
                               ++        ++ +                      L+ +
Sbjct: 230 -------------------ENSEYAQQYKTEDLKWDN-------------------LKDL 251

Query: 710 TGLDLSSNELTGEIPSAIGYLQELHALNLSHNHL--------SGSIPRSFSNLKMIESMD 761
           T +++ +     ++P+ +  L E+  +N++ N                     + I+ + 
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 762 LSYNKLR-GQIPLELSELNYLAIFNVSYNDLSGPTP 796
           + YN L+   +   L ++  L +    YN L G  P
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 83.2 bits (206), Expect = 2e-16
 Identities = 30/277 (10%), Positives = 72/277 (25%), Gaps = 33/277 (11%)

Query: 543 SLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNL 602
           + W+     +        +L  + ++  L L     SG +P  I + + L  L L  +  
Sbjct: 58  ANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGE 117

Query: 603 QGN----IPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVV 658
           + N     P+ +                  +                             
Sbjct: 118 KVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPR---------------------- 155

Query: 659 EHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGV--LEYMTGLDLSS 716
           E F  +     ++     S + +  +  +        N        V  L  +    + +
Sbjct: 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGN 215

Query: 717 NELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELS 776
           +    E              N  +     +    + NLK +  +++       ++P  L 
Sbjct: 216 SPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270

Query: 777 ELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNL 813
            L  + + NV+ N           +    ++     +
Sbjct: 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.1 bits (167), Expect = 6e-12
 Identities = 14/98 (14%), Positives = 34/98 (34%), Gaps = 10/98 (10%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQEL------HALNLSHNHLSGSIPRSFSNLKMIES 759
           L Y+ G+DLS N  +   P+       L      +  +   N      P   +    +  
Sbjct: 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 760 MDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPN 797
           + +  N +R  +  ++     +++ ++  N       +
Sbjct: 571 LQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLS 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.8 bits (148), Expect = 1e-09
 Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 3/78 (3%)

Query: 712 LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQI 771
            D   N    E P  I     L  L +  N +   +         I  +D+  N      
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISID 603

Query: 772 PLELSELNYLAIFNVSYN 789
              +       ++ + Y+
Sbjct: 604 LSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 10/105 (9%)

Query: 703 GGVLEYMTGLDLSSNELTGEIPSA--IGYLQELHALNLSHNHLSG-------SIPRSFSN 753
            G  E +  L  + N+L   IP+      +  + A++ S+N +          +  +   
Sbjct: 373 CGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431

Query: 754 LKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNT 798
              + S++LS N++        S  + L+  N+  N L+    N+
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.5 bits (142), Expect = 7e-09
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 12/101 (11%)

Query: 703 GGVLEYMTGLDLSSNELTG-------EIPSAIGYLQELHALNLSHNHLSGSIPRS--FSN 753
                 ++ ++L  N LT        +          L +++L  N L+  +      + 
Sbjct: 453 FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT 511

Query: 754 LKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYN-DLSG 793
           L  +  +DLSYN      P +    + L  F +    D  G
Sbjct: 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQG 551

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 3/63 (4%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765
              +T L + SN++   +   I     +  L++  N                    L Y+
Sbjct: 565 CPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

Query: 766 KLR 768
           K +
Sbjct: 622 KTQ 624

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  215 bits (550), Expect = 2e-60
 Identities = 99/540 (18%), Positives = 178/540 (32%), Gaps = 40/540 (7%)

Query: 111 LTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCRE 170
             S   L    N L            L NL  LDL+             ++  ++     
Sbjct: 32  PNSTECLEFSFNVLPT--IQNTTFSRLINLTFLDLTRC-----------QIYWIHEDT-- 76

Query: 171 MNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSL 230
                     L  L L+ N L       LS    L+ L      +S  +      N  +L
Sbjct: 77  ----FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTL 131

Query: 231 EYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET---ENFPWLPRFQLKVLNLRRCN 287
           E L L  N+   S  L       +L+VL      I     E+   L +     LNL   +
Sbjct: 132 ESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 288 ISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWL----LQNNTKLEFLFLFNNFLKGLLHL 343
           I+  I          + ++             L    +Q+     F  + +  +   +  
Sbjct: 191 IA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 344 PDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLD 403
              +  +  + +  + F  +  + F      L  LD++       +P  +     L  L 
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHC-FSGLQELDLTATHLS-ELPSGLVGLSTLKKLV 307

Query: 404 LSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMS-MTQLAWLYLNDNQFT--G 460
           LS+N F   L +   +   SL  +++  N    ++    +  +  L  L L+ +      
Sbjct: 308 LSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366

Query: 461 RLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEG-DVSVPLSNLQV 519
                L N   L  L++S N               L++L ++   L+  D   P  NL +
Sbjct: 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426

Query: 520 ARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSI---PSALFQSSQLMTLDLRDN 576
            ++L++S + L    E  F+   +L HL L  N          ++L    +L  L L   
Sbjct: 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486

Query: 577 EFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTN 636
           + S            +  + L  N L  +  + L HL+ I  ++++ N +   +PS    
Sbjct: 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPI 545

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  212 bits (541), Expect = 3e-59
 Identities = 98/532 (18%), Positives = 164/532 (30%), Gaps = 34/532 (6%)

Query: 85  GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLD 144
             L  L  L++              S   L +L L  N L         L   + L+ L 
Sbjct: 54  SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF--MAETALSGPKALKHLF 111

Query: 145 LSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTY 204
               G+             ++         +   K L  L L  N +             
Sbjct: 112 FIQTGISS-----------IDFIP------LHNQKTLESLYLGSNHISSIKLPKGFPTEK 154

Query: 205 LRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQ 264
           L+VLD  +N +   L     ++L     LSL+ N    +       + +  + L     Q
Sbjct: 155 LKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213

Query: 265 IETENFPWLPR---FQLKVLNLRRCNISGTIPSFLQ--YQYDLRYIDLSHNNLAGTFPTW 319
                F  L       L +      +     P+  +   +  +  I+L  +         
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273

Query: 320 LLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLD 379
                + L+ L L    L  L         L  LV+S N F  +   +     P L +L 
Sbjct: 274 -FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASN-FPSLTHLS 331

Query: 380 MSQNSFEGSIPPSM-GYTVRLLFLDLSSNNFSG-ELPKQFLTGCVSLAFMNVSHNYFGGQ 437
           +  N+    +          L  LDLS ++    +     L     L  +N+S+N     
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391

Query: 438 IFPKYMSMTQLAWLYLNDNQFTGRLEEGLL-NAPSLHILDVSNNMLSGQLPHWVGNFSNL 496
               +    QL  L L   +   +  +    N   L +L++S+++L             L
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451

Query: 497 DVLLMSRNSLEGDVSVP---LSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNS 553
             L +  N            L  L    IL +S   L    + +F     + H+ L +N 
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511

Query: 554 LNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGN 605
           L  S         + + L+L  N  S  +P L+   S  R + LR N L   
Sbjct: 512 LT-SSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  195 bits (498), Expect = 2e-53
 Identities = 117/633 (18%), Positives = 194/633 (30%), Gaps = 78/633 (12%)

Query: 178 LKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSG 237
             +   L  S+N L        S L  L  LDLT  Q+   +    F +   L+ L L+ 
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTA 90

Query: 238 NNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQ 297
           N                          +            LK L   +  IS      L 
Sbjct: 91  NPLIF----------------------MAETALSGPK--ALKHLFFIQTGISSIDFIPLH 126

Query: 298 YQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLL-----HLPDSKRDLLH 352
            Q  L  + L  N+++            KL+ L   NN +  L       L  +    L+
Sbjct: 127 NQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185

Query: 353 LVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYT--VRLLFLDLSSNNFS 410
           L   N N I  +             L+         I   +  +    L        +  
Sbjct: 186 L---NGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241

Query: 411 GELPKQFLTGC-VSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNA 469
              P  F   C +S+  +N+  +YF       +   + L  L L     +  L  GL+  
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGL 300

Query: 470 PSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDV-SVPLSNLQVARILDISEN 528
            +L  L +S N           NF +L  L +  N+   ++ +  L NL+  R LD+S +
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

Query: 529 KLY--GPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLI 586
            +           + S L  L L  N        A  +  QL  LDL             
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

Query: 587 NED-SNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGD 645
            ++   L+ L L  + L  +  Q    L  +  +++  N                     
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI-------------Q 467

Query: 646 PFNGFVFGYTLVVEHFPAISAYYN---STLNLIFSGEDN-RELRQRVEVKFMAKNRYESY 701
             N       L +     +   +    S     F+       +        ++ NR  S 
Sbjct: 468 KTNSLQTLGRLEI-----LVLSFCDLSSIDQHAFTSLKMMNHV-------DLSHNRLTSS 515

Query: 702 KGGVLEYMTGL--DLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIES 759
               L ++ G+  +L+SN ++  +PS +  L +   +NL  N L  +     SN+  +E 
Sbjct: 516 SIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC----SNIYFLEW 571

Query: 760 MDLSYNKLRGQIPLELSELNYLAIFNVSYNDLS 792
              +  KL             L    +S   LS
Sbjct: 572 YKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  167 bits (426), Expect = 6e-44
 Identities = 87/497 (17%), Positives = 173/497 (34%), Gaps = 48/497 (9%)

Query: 75  NVTTANYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVL 134
           ++++         ++LK+L+   N+        ++SL   T+L L  N   +        
Sbjct: 140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199

Query: 135 PNLRNLEVLDLSGN--------GLIGSLTMQGEKLELLNNKCREMNARI---CELKNLVE 183
            +    + L+  G         GL  S           +    +++  +       ++  
Sbjct: 200 -DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258

Query: 184 LNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGS 243
           +NL  +             + L+ LDLT+  LS  LP S    L++L+ L LS N F+  
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELP-SGLVGLSTLKKLVLSANKFEN- 315

Query: 244 FSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPS-FLQYQYDL 302
                                +   +    P   L  L+++       + +  L+   +L
Sbjct: 316 ---------------------LCQISASNFP--SLTHLSIKGNTKRLELGTGCLENLENL 352

Query: 303 RYIDLSHNNLAG-TFPTWLLQNNTKLEFLFLFNNFLKGL-LHLPDSKRDLLHLVISNNNF 360
           R +DLSH+++         L+N + L+ L L  N    L          L  L ++    
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412

Query: 361 IGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSG--ELPKQFL 418
                 +    L  L  L++S +  + S          L  L+L  N+F          L
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472

Query: 419 TGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVS 478
                L  + +S           + S+  +  + L+ N+ T    E L +   ++ L+++
Sbjct: 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLA 531

Query: 479 NNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSF 538
           +N +S  LP  +   S    + + +N L+       SN+        +  KL    +   
Sbjct: 532 SNHISIILPSLLPILSQQRTINLRQNPLDCT----CSNIYFLEWYKENMQKLEDTEDTLC 587

Query: 539 NHSSSLWHLFLHNNSLN 555
            +   L  + L + +L+
Sbjct: 588 ENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  157 bits (399), Expect = 2e-40
 Identities = 86/516 (16%), Positives = 157/516 (30%), Gaps = 55/516 (10%)

Query: 303 RYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLL-----HLPDSKRDLLHLVISN 357
           +  +  +  L    P  L  +    E L    N L  +       L +    L  L ++ 
Sbjct: 15  KTYNCENLGLN-EIPGTLPNS---TECLEFSFNVLPTIQNTTFSRLIN----LTFLDLTR 66

Query: 358 NNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQF 417
                +  D F      L  L ++ N        ++     L  L       S  +    
Sbjct: 67  CQIYWIHEDTFQS-QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIP 124

Query: 418 LTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHI--L 475
           L    +L  + +  N+      PK     +L  L   +N      +E + +        L
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184

Query: 476 DVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARI--LDISENKLYG- 532
           +++ N ++G +     + +    L          +   L N  +  +      +      
Sbjct: 185 NLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243

Query: 533 -PLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSN 591
            P  F      S+  + L  +       +     S L  LDL     S  +P  +   S 
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLST 302

Query: 592 LRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFV 651
           L+ L+L  N  +        +   +  + I  N     + +                   
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC------------LENLE 350

Query: 652 FGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQ--RVEVKFMAKNRYESYKGGVLEYM 709
               L + H        +   ++  S   N +LR    ++   ++ N   S K    +  
Sbjct: 351 NLRELDLSH--------D---DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399

Query: 710 TGL---DLSSNELTG-EIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765
             L   DL+   L   +  S    L  L  LNLSH+ L  S  + F  L  ++ ++L  N
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459

Query: 766 KLRGQIPLE---LSELNYLAIFNVSYNDLSGPTPNT 798
                   +   L  L  L I  +S+ DLS    + 
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  133 bits (338), Expect = 1e-32
 Identities = 65/410 (15%), Positives = 128/410 (31%), Gaps = 60/410 (14%)

Query: 402 LDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGR 461
            +  +   + E+P        S   +  S N         +  +  L +L L   Q    
Sbjct: 17  YNCENLGLN-EIPGTLPN---STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 462 LEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVAR 521
            E+   +   L  L ++ N L       +     L  L   +  +     +PL N +   
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 522 ILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSAL--FQSSQLMTLDLRDNEFS 579
            L +  N +          +  L  L   NN+++      +   Q +  ++L+L  N+ +
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192

Query: 580 GNIPPLINEDSNLRALLLRGNNLQGNIPQQL--CHLRKIAIVDISYNLLDGSIPSCFTNI 637
           G I P   + +  ++L   G      I + L    ++ + +        +   P+ F  +
Sbjct: 193 G-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 638 WPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNR 697
                                           S  ++                     + 
Sbjct: 252 -----------------------------CEMSVESINLQK-----------------HY 265

Query: 698 YESYKGGVLEYMTGL---DLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNL 754
           + +         +GL   DL++  L+ E+PS +  L  L  L LS N        S SN 
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324

Query: 755 KMIESMDLSYNKLRGQIPLE-LSELNYLAIFNVSYNDLSGPTPNTKQFAN 803
             +  + +  N  R ++    L  L  L   ++S++D+        Q  N
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.0 bits (146), Expect = 2e-09
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 712 LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQI 771
           L LS  +L+     A   L+ ++ ++LSHN L+ S   + S+LK I  ++L+ N +   +
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIIL 539

Query: 772 PLELSELNYLAIFNVSYNDLSG 793
           P  L  L+     N+  N L  
Sbjct: 540 PSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 3e-09
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 3/96 (3%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSI---PRSFSNLKMIESMDL 762
           L  +  L+LS + L          L  L  LNL  NH          S   L  +E + L
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

Query: 763 SYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNT 798
           S+  L        + L  +   ++S+N L+  +   
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 4e-09
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 712 LDLSSNELTGEI---PSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLR 768
           L+L  N          +++  L  L  L LS   LS     +F++LKM+  +DLS+N+L 
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513

Query: 769 GQIPLELSELNYLAIFNVSYNDLSGPTPNT 798
                 LS L  +   N++ N +S   P+ 
Sbjct: 514 SSSIEALSHLKGI-YLNLASNHISIILPSL 542

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  211 bits (540), Expect = 4e-59
 Identities = 99/562 (17%), Positives = 175/562 (31%), Gaps = 67/562 (11%)

Query: 90  LKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNG 149
            K +++ FN          ++ + L  L L    +       K    L +L  L L+GN 
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED--KAWHGLHHLSNLILTGNP 91

Query: 150 LIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLD 209
           +              +            L +L  L     KL       +  L  L+ L+
Sbjct: 92  IQSFSP------GSFSG-----------LTSLENLVAVETKLASLESFPIGQLITLKKLN 134

Query: 210 LTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETEN 269
           +  N +      + F+NLT+L ++ LS N  Q                       I   +
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT----------------------ITVND 172

Query: 270 FPWLP--RFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKL 327
             +L         L++    I        Q    L  + L  N  +       LQN   L
Sbjct: 173 LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGL 231

Query: 328 EFLFLFNNFLKGLLHLPDSKRD---------LLHLVISNNNFIGMLPDNFGMILPELVYL 378
               L     K   +L   +           +    ++  N        F   L  +  +
Sbjct: 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHC-LANVSAM 290

Query: 379 DMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQI 438
            ++  S        +    +   L +       + P   L     L  + ++ N   G I
Sbjct: 291 SLAGVSI--KYLEDVPKHFKWQSLSIIRCQLK-QFPTLDLP---FLKSLTLTMNK--GSI 342

Query: 439 FPKYMSMTQLAWLYLNDNQFTGRLEE--GLLNAPSLHILDVSNNMLSGQLPHWVGNFSNL 496
             K +++  L++L L+ N  +         L   SL  LD+S N     +         L
Sbjct: 343 SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEEL 401

Query: 497 DVLLMSRNSLEG-DVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLN 555
             L    ++L+         +L+    LDIS        +  F   +SL  L +  NS  
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 556 GSIPSALFQS-SQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLR 614
            +  S +F + + L  LDL   +       + +    L+ L +  NNL          L 
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521

Query: 615 KIAIVDISYNLLDGSIPSCFTN 636
            ++ +D S+N ++ S       
Sbjct: 522 SLSTLDCSFNRIETSKGILQHF 543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  198 bits (505), Expect = 2e-54
 Identities = 102/535 (19%), Positives = 172/535 (32%), Gaps = 71/535 (13%)

Query: 85  GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLD 144
             L  L  L +  N          + LTSL +L      L    +    +  L  L+ L+
Sbjct: 77  HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL-ASLES-FPIGQLITLKKLN 134

Query: 145 LSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTY 204
           ++ N +                   ++ A    L NLV ++LS+N +       L  L  
Sbjct: 135 VAHNFIHSC----------------KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178

Query: 205 LR----VLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQI 260
                  LD++ N +   +    F  +  L  L+L GN    +   + L N + L V ++
Sbjct: 179 NPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 261 SRLQIETEN---------FPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNN 311
              + + E             L    +    L   N             ++  + L+  +
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296

Query: 312 LAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMI 371
           +        +  + K + L +    LK    L      L  L ++ N             
Sbjct: 297 IKYLED---VPKHFKWQSLSIIRCQLKQFPTLDLPF--LKSLTLTMNKGSISFKKVA--- 348

Query: 372 LPELVYLDMSQNSFEGSIPPS--MGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNV 429
           LP L YLD+S+N+   S   S     T  L  LDLS N     +   F            
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANF------------ 395

Query: 430 SHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLL-NAPSLHILDVSNNMLSGQLPH 488
                        M + +L  L    +      E     +   L  LD+S          
Sbjct: 396 -------------MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

Query: 489 WVGNFSNLDVLLMSRNSLEGDVSVP-LSNLQVARILDISENKLYGPLEFSFNHSSSLWHL 547
                ++L+ L M+ NS + +      +N      LD+S+ +L       F+    L  L
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502

Query: 548 FLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNL 602
            + +N+L     S   Q   L TLD   N    +   L +   +L    L  N++
Sbjct: 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  192 bits (489), Expect = 3e-52
 Identities = 99/622 (15%), Positives = 190/622 (30%), Gaps = 105/622 (16%)

Query: 180 NLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNN 239
           +   ++LS+N L        SN + L+ LDL+  ++   +    +  L  L  L L+GN 
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNP 91

Query: 240 FQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQ 299
            Q                           +F  L    L+ L      ++      +   
Sbjct: 92  IQS----------------------FSPGSFSGLT--SLENLVAVETKLASLESFPIGQL 127

Query: 300 YDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNN 359
             L+ ++++HN +          N T L  + L  N+++                I+ N+
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT---------------ITVND 172

Query: 360 FIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLT 419
                           + LDMS N  +  I       ++L  L L  N  S  + K  L 
Sbjct: 173 L-----QFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ 226

Query: 420 GCVSLAFMNVSHNYFGGQI--------FPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPS 471
               L    +    F  +           + +    +    L                 +
Sbjct: 227 NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN 286

Query: 472 LHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLY 531
           +  + ++   +   L            L + R  L+   ++ L  L+    L ++ NK  
Sbjct: 287 VSAMSLAGVSIK-YLEDVP-KHFKWQSLSIIRCQLKQFPTLDLPFLKS---LTLTMNKGS 341

Query: 532 GPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSN 591
              +       SL +L L  N+L+ S   +                            ++
Sbjct: 342 ISFKKVAL--PSLSYLDLSRNALSFSGCCSYSDLGT----------------------NS 377

Query: 592 LRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGD-PFNGF 650
           LR L L  N     +      L ++  +D  ++ L              +   D  +   
Sbjct: 378 LRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 651 VFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMT 710
              +  +     +++     TL +      N      +   F                +T
Sbjct: 437 KIDFDGIFLGLTSLN-----TLKM----AGNSFKDNTLSNVF-----------ANTTNLT 476

Query: 711 GLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQ 770
            LDLS  +L          L  L  LN+SHN+L       ++ L  + ++D S+N++   
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536

Query: 771 IPLELSELNYLAIFNVSYNDLS 792
             +       LA FN++ N ++
Sbjct: 537 KGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  145 bits (367), Expect = 2e-36
 Identities = 76/426 (17%), Positives = 140/426 (32%), Gaps = 44/426 (10%)

Query: 85  GSLKQLKILNIGFNSFS----ESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNL 140
            +L  L  +++ +N         L  L  +     SL +  N +   F   +    +  L
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID--FIQDQAFQGI-KL 206

Query: 141 EVLDLSGNGLIGSLT-------MQGEKLELLNNKCREMN----------ARICELKNLVE 183
             L L GN    ++               L+  + ++              +C++    E
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID-E 265

Query: 184 LNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGS 243
             L++             L  +  + L    +     +         + LS+     +  
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY---LEDVPKHFKWQSLSIIRCQLKQF 322

Query: 244 FSLSVLANHSRLEVLQISRLQIET-ENFPWLPRFQLKVLNLRRCNISGTIPSFLQ--YQY 300
            +L    +   L+ L ++  +         LP   L  L+L R  +S +           
Sbjct: 323 PTL----DLPFLKSLTLTMNKGSISFKKVALP--SLSYLDLSRNALSFSGCCSYSDLGTN 376

Query: 301 DLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSK--RDLLHLVISNN 358
            LR++DLS N       +       +L+ L   ++ LK +           LL+L IS  
Sbjct: 377 SLRHLDLSFNGA--IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

Query: 359 NFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSM-GYTVRLLFLDLSSNNFSGELPKQF 417
           N        F   L  L  L M+ NSF+ +   ++   T  L FLDLS      ++    
Sbjct: 435 NTKIDFDGIFLG-LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE-QISWGV 492

Query: 418 LTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDV 477
                 L  +N+SHN         Y  +  L+ L  + N+             SL   ++
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNL 552

Query: 478 SNNMLS 483
           +NN ++
Sbjct: 553 TNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  125 bits (315), Expect = 7e-30
 Identities = 81/472 (17%), Positives = 152/472 (32%), Gaps = 46/472 (9%)

Query: 351 LHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFS 410
           +     +      +PD+   I      +D+S N  +     S      L +LDLS     
Sbjct: 14  ITYQCMDQKLSK-VPDD---IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE 69

Query: 411 GELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAP 470
             +  +   G   L+ + ++ N         +  +T L  L   + +        +    
Sbjct: 70  T-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128

Query: 471 SLHILDVSNNMLSG-QLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQ----VARILDI 525
           +L  L+V++N +   +LP +  N +NL  + +S N ++      L  L+    V   LD+
Sbjct: 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188

Query: 526 SENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS-SQLMTLDLRDNEFSGN--- 581
           S N +   ++        L  L L  N  + +I     Q+ + L    L   EF      
Sbjct: 189 SLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247

Query: 582 --IPPLINE---DSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTN 636
               P I E   D  +    L   N   +   +   L  ++ + ++   +          
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF 307

Query: 637 IWPWME------EGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEV 690
            W  +       +  P     F  +L +              N          L   +  
Sbjct: 308 KWQSLSIIRCQLKQFPTLDLPFLKSLTLTM------------NKGSISFKKVALPS-LSY 354

Query: 691 KFMAKNRYESYKGGVLEYMTG-----LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSG 745
             +++N            +       LDLS N     + +    L+EL  L+  H+ L  
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKR 413

Query: 746 SIPRS-FSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTP 796
               S F +L+ +  +D+SY   +         L  L    ++ N     T 
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  121 bits (306), Expect = 8e-29
 Identities = 72/419 (17%), Positives = 144/419 (34%), Gaps = 35/419 (8%)

Query: 388 SIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQ 447
            +P  +  + +   +DLS N     L     +    L ++++S           +  +  
Sbjct: 25  KVPDDIPSSTK--NIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH 81

Query: 448 LAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLE 507
           L+ L L  N              SL  L      L+      +G    L  L ++ N + 
Sbjct: 82  LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141

Query: 508 G-DVSVPLSNLQVARILDISENKL----YGPLEFSFNHSSSLWHLFLHNNSLNGSIPSAL 562
              +    SNL     +D+S N +       L+F   +      L +  N ++  I    
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQA 200

Query: 563 FQSSQLMTLDLRDNEFSGNIPPLINED-SNLRALLLRGNNLQGNIPQQLCHLRKIA-IVD 620
           FQ  +L  L LR N  S NI     ++ + L    L     +     ++     +  + D
Sbjct: 201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260

Query: 621 ISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGED 680
           ++ +    +  + F++      +   F+       + +           S +  +     
Sbjct: 261 VTIDEFRLTYTNDFSD------DIVKFHCLANVSAMSLAG--------VS-IKYLEDVPK 305

Query: 681 NRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSH 740
           + + +       + + + + +    L ++  L L+ N+ +  I      L  L  L+LS 
Sbjct: 306 HFKWQ----SLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSR 359

Query: 741 NHLSGSIPRSFSNLKM--IESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPN 797
           N LS S   S+S+L    +  +DLS+N     +      L  L   +  ++ L   T  
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEF 417

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  121 bits (305), Expect = 1e-28
 Identities = 60/266 (22%), Positives = 98/266 (36%), Gaps = 20/266 (7%)

Query: 80  NYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRN 139
                  L  LK L +  N  S S      +L SL+ L L  N L              +
Sbjct: 320 KQFPTLDLPFLKSLTLTMNKGSIS--FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 140 LEVLDLSGNGLIG-SLTMQG----EKLELLNNKCREMNAR--ICELKNLVELNLSWNKLD 192
           L  LDLS NG I  S    G    + L+  ++  + +        L+ L+ L++S+    
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

Query: 193 GSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANH 252
                    LT L  L +  N    N   +VFAN T+L +L LS    +   S  V    
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE-QISWGVFDTL 496

Query: 253 SRLEVLQISRLQIET---ENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSH 309
            RL++L +S   +      ++  L    L  L+     I  +      +   L + +L++
Sbjct: 497 HRLQLLNMSHNNLLFLDSSHYNQLYS--LSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554

Query: 310 NNL-----AGTFPTWLLQNNTKLEFL 330
           N++        F  W+ +    L  +
Sbjct: 555 NSVACICEHQKFLQWVKEQKQFLVNV 580

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  100 bits (251), Expect = 5e-22
 Identities = 48/358 (13%), Positives = 94/358 (26%), Gaps = 47/358 (13%)

Query: 446 TQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNS 505
           +    + L+ N           N   L  LD+S   +            +L  L+++ N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 506 LEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS 565
           ++       S L     L   E KL     F      +L  L + +N ++     A F +
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 566 -SQLMTLDLRDNEFSGNIP----PLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVD 620
            + L+ +DL  N            L        +L +  N +   I  Q     K+  + 
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELT 210

Query: 621 ISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGED 680
           +  N    +I          +       G          +           L  +     
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER----NLEIFEPSIMEGLCDV----- 261

Query: 681 NRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSH 740
                                       +    L+      +       L  + A++L+ 
Sbjct: 262 ---------------------------TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294

Query: 741 NHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNT 798
             +              +S+ +   +L+    L+L  L  L    ++ N  S      
Sbjct: 295 VSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSL---TLTMNKGSISFKKV 347

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 83.2 bits (206), Expect = 1e-16
 Identities = 50/339 (14%), Positives = 103/339 (30%), Gaps = 59/339 (17%)

Query: 475 LDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPL 534
               +  LS ++P  +   S+   + +S N L+   S   SN    + LD+S  ++    
Sbjct: 16  YQCMDQKLS-KVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 535 EFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRA 594
           + +++    L +L L  N +    P +    + L  L   + + +      I +   L+ 
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 595 LLLRGNNLQG-NIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFG 653
           L +  N +    +P    +L  +  VD+SYN +     +    +                
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL---------------- 176

Query: 654 YTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYM--TG 711
                                       RE  Q      M+ N  +  +    + +    
Sbjct: 177 ----------------------------RENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE 208

Query: 712 LDLSSNELTGEIPS-AIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESM--------DL 762
           L L  N  +  I    +  L  LH   L                 ++E +         L
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 763 SYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQF 801
           +Y        ++   L  ++  +++   +       K F
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF 307

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.0 bits (151), Expect = 6e-10
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 1/88 (1%)

Query: 712 LDLSSNELTGEIPS-AIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQ 770
           L ++ N       S        L  L+LS   L       F  L  ++ +++S+N L   
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512

Query: 771 IPLELSELNYLAIFNVSYNDLSGPTPNT 798
                ++L  L+  + S+N +       
Sbjct: 513 DSSHYNQLYSLSTLDCSFNRIETSKGIL 540

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.9 bits (143), Expect = 5e-09
 Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 706 LEYMTGLDLSSNELTGEIP-SAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSY 764
           LE +  LD   + L      SA   L++L  L++S+ +        F  L  + ++ ++ 
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457

Query: 765 NKLRGQIPLE-LSELNYLAIFNVSYNDLSGPTPNT 798
           N  +        +    L   ++S   L   +   
Sbjct: 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  203 bits (517), Expect = 1e-54
 Identities = 90/636 (14%), Positives = 189/636 (29%), Gaps = 81/636 (12%)

Query: 30  NERIGLLEIKTFIKS-----VSDMQFADAILVSWVDNRTSDCCSWERIKCNVTTANYNNN 84
            +   L  I   +        S         ++W  N   +   W     +    + +NN
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINNTIHSLNW--NFNKELDMW----GDQPGVDLDNN 322

Query: 85  GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLD 144
           G +  L   ++        +   +  LT L  L    ++         V   L   E L 
Sbjct: 323 GRVTGL---SLAGFGAKGRVPDAIGQLTELKVLSFGTHSE-------TVSGRLFGDEELT 372

Query: 145 LSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTY 204
              +                     + + R+     L +      ++         +L  
Sbjct: 373 PDMSEERKHRI-----RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKD 427

Query: 205 LRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQ 264
            ++ +L +N+++  +  +    LT L+ +  + + F          + +     Q    +
Sbjct: 428 TQIGNL-TNRITF-ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE 484

Query: 265 IETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNN 324
           +   N        L  + L  C     +P FL    +L+ ++++ N              
Sbjct: 485 LSWSNLK-----DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

Query: 325 TKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNS 384
              +                     +    +  NN            + +L  LD   N 
Sbjct: 540 LADDEDTGPK---------------IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK 584

Query: 385 FEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMS 444
                  + G  V+L  L L  N    E+P+ F      +  +  SHN    +  P   +
Sbjct: 585 V--RHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL--KYIPNIFN 639

Query: 445 ---MTQLAWLYLNDNQFTGRLEE-----GLLNAPSLHILDVSNNMLSGQLPHWVGNFSNL 496
              +  +  +  + N+                  +   + +S N +           S +
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699

Query: 497 DVLLMSRNSLE-------GDVSVPLSNLQVARILDISENKLYG-PLEFSFNHSSSLWHLF 548
             +++S N +                N  +   +D+  NKL     +F       L ++ 
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMD 759

Query: 549 LHNNSLNGSIPSALFQSSQLMTLDLR------DNEFSGNIPPLINEDSNLRALLLRGNNL 602
           +  N  + S P+    SSQL    +R       N      P  I    +L  L +  N++
Sbjct: 760 VSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818

Query: 603 QGNIPQQLCHLRKIAIVDISYN-LLDGSIPSCFTNI 637
           +  + ++L    ++ I+DI+ N  +   + S    I
Sbjct: 819 R-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYI 851

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  187 bits (477), Expect = 2e-49
 Identities = 78/537 (14%), Positives = 147/537 (27%), Gaps = 80/537 (14%)

Query: 82  NNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLE 141
           + +  L    +L    N   E       S  SL    +      + F   K +  L  L+
Sbjct: 393 DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFIS-KAIQRLTKLQ 451

Query: 142 VLDLSGNGLIGSLTMQGEKLELL--NNKCREMNARICELKNLVELNLSWNKLDGSLPQCL 199
           ++  + +           +        +          LK+L ++ L        LP  L
Sbjct: 452 IIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511

Query: 200 SNLTYLRVLDLTSNQLSGNLPI--------SVFANLTSLEYLSLSGNNFQGSFSLSVLAN 251
            +L  L+ L++  N+      +                ++   +  NN +   + + L  
Sbjct: 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK 571

Query: 252 HSRLEVLQISRLQIETENFPWLPRF----QLKVLNLRRCNISGTIPSFLQYQYDLRYIDL 307
             +L +L     ++       L  F    +L  L L    I      F  +   +  +  
Sbjct: 572 MVKLGLLDCVHNKVRH-----LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626

Query: 308 SHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDN 367
           SHN L      +  ++   +  +    N +           D    +             
Sbjct: 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI------------- 673

Query: 368 FGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFM 427
                     + +S N  +            +  + LS+N  +  +P+  L         
Sbjct: 674 ------NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSL--------- 717

Query: 428 NVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLL-NAPSLHILDVSNNMLSGQL 486
                         Y +   L  + L  N+ T   ++      P L  +DVS N  S   
Sbjct: 718 --------KPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-F 768

Query: 487 PHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWH 546
           P    N S L    +                      D   N++            SL  
Sbjct: 769 PTQPLNSSQLKAFGIRHQ------------------RDAEGNRILRQWPTGITTCPSLIQ 810

Query: 547 LFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQ 603
           L + +N +   +   L    QL  LD+ DN         +         +L  +  Q
Sbjct: 811 LQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  155 bits (392), Expect = 6e-39
 Identities = 74/446 (16%), Positives = 140/446 (31%), Gaps = 54/446 (12%)

Query: 89  QLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGN 148
             +  N  +    E+     ++L  LT + L      +   P   L +L  L+ L+++ N
Sbjct: 468 DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN-MTQLP-DFLYDLPELQSLNIACN 525

Query: 149 GLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDG-SLPQCLSNLTYLRV 207
             I            L      +         +    + +N L+       L  +  L +
Sbjct: 526 RGIS--------AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577

Query: 208 LDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET 267
           LD   N++     +  F     L  L L  N  +        A   ++E L  S  +++ 
Sbjct: 578 LDCVHNKVRH---LEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY 633

Query: 268 --ENFPWLPRFQLKVLNLRRCNISGTIPSFL-----QYQYDLRYIDLSHNNLAGTFPTWL 320
               F     + +  ++     I     +           +   + LS+N +   FPT L
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTEL 692

Query: 321 LQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDM 380
               + +  + L NN +  +                  N +     N+      L  +D+
Sbjct: 693 FATGSPISTIILSNNLMTSI----------------PENSLKPKDGNYKN-TYLLTTIDL 735

Query: 381 SQNSFEGSIPPSMGYT--VRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSH------N 432
             N    S+      T    L  +D+S N FS   P Q L     L    + H      N
Sbjct: 736 RFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPL-NSSQLKAFGIRHQRDAEGN 792

Query: 433 YFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGN 492
               Q      +   L  L +  N     ++E L   P L+ILD+++N         V  
Sbjct: 793 RILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKLT--PQLYILDIADNPNISIDVTSVCP 849

Query: 493 FSNLDVLLMSRNSLEGDVSVPLSNLQ 518
           +    + ++  +  +         ++
Sbjct: 850 YIEAGMYVLLYDKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  140 bits (354), Expect = 3e-34
 Identities = 59/472 (12%), Positives = 128/472 (27%), Gaps = 82/472 (17%)

Query: 350 LLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNF 409
           +  L ++     G +PD  G  L EL  L    +S   S        +     +   +  
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 410 SGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTG------RLE 463
                K FL     L   ++  +       P+   + + + + L D Q          + 
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINR--NPEMKPIKKDSRISLKDTQIGNLTNRITFIS 441

Query: 464 EGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARIL 523
           + +     L I+  +N+  +           + +           +  +  SNL+    +
Sbjct: 442 KAIQRLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496

Query: 524 DISENKLYGPLEFSFNHSSSLWHLFLHNNSLNG---------SIPSALFQSSQLMTLDLR 574
           ++        L         L  L +  N              +        ++    + 
Sbjct: 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556

Query: 575 DNEFSG-NIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSC 633
            N          + +   L  L    N +     +      K+  + + YN ++  IP  
Sbjct: 557 YNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE-EIPED 613

Query: 634 FTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFM 693
           F      +E                     +   +N  L  I +  + + +         
Sbjct: 614 FCAFTDQVEG--------------------LGFSHNK-LKYIPNIFNAKSVYV------- 645

Query: 694 AKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQE-----LHALNLSHNHLSGSIP 748
                          M  +D S N++  E  +    + +        + LS+N +     
Sbjct: 646 ---------------MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT 690

Query: 749 RSFSNLKMIESMDLSYNKLR-------GQIPLELSELNYLAIFNVSYNDLSG 793
             F+    I ++ LS N +                    L   ++ +N L+ 
Sbjct: 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  118 bits (296), Expect = 3e-27
 Identities = 53/399 (13%), Positives = 123/399 (30%), Gaps = 66/399 (16%)

Query: 427 MNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQL 486
            N   + +G Q      +  ++  L L      GR+ + +     L +L    +  +   
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 487 PHWVGNFSNLDVLLMSRNSLEGDVS-VPLSNLQVARILDISENKL-----YGPLEFSFNH 540
             +       D+    ++ +      + L   Q   + D+ ++ +       P++     
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 541 SSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINED----------- 589
           S     +    N +   I  A+ + ++L  +   ++ F+ +   +  ED           
Sbjct: 424 SLKDTQIGNLTNRI-TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482

Query: 590 --------SNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWM 641
                    +L  + L        +P  L  L ++  ++I+ N    +            
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQL-------KA 535

Query: 642 EEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESY 701
           +     +    G  + +         YN+ L    +    +++ +               
Sbjct: 536 DWTRLADDEDTGPKIQI-----FYMGYNN-LEEFPASASLQKMVK--------------- 574

Query: 702 KGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMD 761
                  +  LD   N++      A G   +L  L L +N +        +    +E + 
Sbjct: 575 -------LGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLG 625

Query: 762 LSYNKLRGQIP--LELSELNYLAIFNVSYNDLSGPTPNT 798
            S+NKL+  IP       +  +   + SYN +     N 
Sbjct: 626 FSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 89.2 bits (221), Expect = 2e-18
 Identities = 34/290 (11%), Positives = 89/290 (30%), Gaps = 23/290 (7%)

Query: 521 RILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSG 580
             LD    + Y     +  HS + W+     +         L  + ++  L L      G
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLN-WNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKG 337

Query: 581 NIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPW 640
            +P  I + + L+ L    ++   +            + +   + +       F +    
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397

Query: 641 MEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNR------ELRQ--RVEVKF 692
           +   D             E  P       S  +       NR       +++  ++++ +
Sbjct: 398 LNLSDLLQ---DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIY 454

Query: 693 MAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFS 752
            A + +      +       +    +       +   L++L  + L +      +P    
Sbjct: 455 FANSPFTY--DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512

Query: 753 NLKMIESMDLSYNKLRG---------QIPLELSELNYLAIFNVSYNDLSG 793
           +L  ++S++++ N+            ++  +      + IF + YN+L  
Sbjct: 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.2 bits (164), Expect = 2e-11
 Identities = 18/123 (14%), Positives = 43/123 (34%), Gaps = 11/123 (8%)

Query: 699 ESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSH------NHLSGSIPRSFS 752
           + ++   L Y++ +D+S N  +   P+      +L A  + H      N +    P   +
Sbjct: 745 DDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803

Query: 753 NLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDL-SGPTPNTKQFANFDESNYRG 811
               +  + +  N +R  +  +L     L I +++ N   S    +   +          
Sbjct: 804 TCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLY 860

Query: 812 NLN 814
           +  
Sbjct: 861 DKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 6/122 (4%)

Query: 710 TGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRG 769
           TGL L+     G +P AIG L EL  L+   +  + S           +  +   +++R 
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385

Query: 770 QI-PLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPAVLKNCSTDL 828
               + L     L + ++  + ++   P  K      + + R +L       L N  T +
Sbjct: 386 HYKKMFLDYDQRLNLSDLLQDAINR-NPEMKPI----KKDSRISLKDTQIGNLTNRITFI 440

Query: 829 PP 830
             
Sbjct: 441 SK 442

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  176 bits (450), Expect = 1e-49
 Identities = 84/355 (23%), Positives = 132/355 (37%), Gaps = 76/355 (21%)

Query: 475 LDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVP--LSNLQVARILDIS-ENKLY 531
            D  N    G L         ++ L +S  +L     +P  L+NL     L I   N L 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 532 GPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSN 591
           GP+  +    + L +L++ + +++G+IP  L Q   L+TLD   N  SG +PP I+   N
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 592 LRALLLRGNNLQGNIPQQLCHLRKIAIV-DISYNLLDGSIPSCFTNIWPWMEEGDPFNGF 650
           L  +   GN + G IP       K+     IS N L G IP  F N+             
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL------------- 197

Query: 651 VFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMT 710
                    +   +    N        G+ +                      G  +   
Sbjct: 198 ---------NLAFVDLSRNM-----LEGDASVLF-------------------GSDKNTQ 224

Query: 711 GLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQ 770
            + L+ N L  ++   +G  + L+ L+L +N + G++P+  + LK               
Sbjct: 225 KIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK--------------- 268

Query: 771 IPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPAVLKNCS 825
                    +L   NVS+N+L G  P       FD S Y  N  LCG + L  C+
Sbjct: 269 ---------FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG-SPLPACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  166 bits (424), Expect = 4e-46
 Identities = 68/258 (26%), Positives = 109/258 (42%), Gaps = 5/258 (1%)

Query: 378 LDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELP-KQFLTGCVSLAFMNVSH-NYFG 435
            D    ++ G +  +   T R+  LDLS  N     P    L     L F+ +   N   
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 436 GQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSN 495
           G I P    +TQL +LY+     +G + + L    +L  LD S N LSG LP  + +  N
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 496 LDVLLMSRNSLEGDVSVPLSNLQ-VARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSL 554
           L  +    N + G +     +   +   + IS N+L G +  +F + + L  + L  N L
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209

Query: 555 NGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLR 614
            G              + L  N  + ++  +     NL  L LR N + G +PQ L  L+
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-KNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 615 KIAIVDISYNLLDGSIPS 632
            +  +++S+N L G IP 
Sbjct: 269 FLHSLNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  157 bits (400), Expect = 8e-43
 Identities = 79/411 (19%), Positives = 142/411 (34%), Gaps = 117/411 (28%)

Query: 27  CLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCC--SWERIKCNVTTANYNNN 84
           C   ++  LL+IK   K + +       L SW    T+DCC  +W  + C+        +
Sbjct: 3   CNPQDKQALLQIK---KDLGN----PTTLSSW--LPTTDCCNRTWLGVLCD-------TD 46

Query: 85  GSLKQLKILNIGFNSFSESLV--PLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEV 142
               ++  L++   +  +       L +L  L  L++ G N  VG  P   +  L  L  
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP-PAIAKLTQLHY 105

Query: 143 LDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNL 202
           L ++   + G++                    + ++K LV L+ S+N L G+LP  +S+L
Sbjct: 106 LYITHTNVSGAIP-----------------DFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 203 TYLRVLDLTSNQLSGNLPISVFANLTSL-EYLSLSGNNFQGSFSLSVLANHSRLEVLQIS 261
             L  +    N++SG +P S   + + L   +++S N                       
Sbjct: 149 PNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRL--------------------- 186

Query: 262 RLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLL 321
                                      +G IP       +L ++DLS N L G       
Sbjct: 187 ---------------------------TGKIPPTFA-NLNLAFVDLSRNMLEGDASVLFG 218

Query: 322 QNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMS 381
            ++   + + L                       + N+    L    G+    L  LD+ 
Sbjct: 219 -SDKNTQKIHL-----------------------AKNSLAFDLGK-VGL-SKNLNGLDLR 252

Query: 382 QNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHN 432
            N   G++P  +     L  L++S NN  GE+P+              ++N
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  151 bits (384), Expect = 8e-41
 Identities = 71/283 (25%), Positives = 113/283 (39%), Gaps = 38/283 (13%)

Query: 285 RCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWL-LQNNTKLEFLFLFN-NFLKGLLH 342
                G +       Y +  +DLS  NL   +P    L N   L FL++   N L G   
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG--P 92

Query: 343 LPDS---KRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRL 399
           +P +      L +L I++ N  G +PD     +  LV LD S N+  G++PPS+     L
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 400 LFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFT 459
           + +    N  SG +P  +      L                          + ++ N+ T
Sbjct: 152 VGITFDGNRISGAIPDSYG-SFSKL-----------------------FTSMTISRNRLT 187

Query: 460 GRL--EEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNL 517
           G++      LN   L  +D+S NML G      G+  N   + +++NSL  D+   +   
Sbjct: 188 GKIPPTFANLN---LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLS 243

Query: 518 QVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPS 560
           +    LD+  N++YG L         L  L +  N+L G IP 
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  124 bits (313), Expect = 2e-31
 Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 5/173 (2%)

Query: 468 NAPSLHILDVSNNMLSGQ--LPHWVGNFSNLDVL-LMSRNSLEGDVSVPLSNLQVARILD 524
               ++ LD+S   L     +P  + N   L+ L +   N+L G +   ++ L     L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 525 ISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPP 584
           I+   + G +    +   +L  L    N+L+G++P ++     L+ +    N  SG IP 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 585 LINEDSNL-RALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTN 636
                S L  ++ +  N L G IP    +L  +A VD+S N+L+G     F +
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGS 219

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 67.2 bits (165), Expect = 4e-12
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 710 TGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGS--IPRSFSNLKMIESMDLS-YNK 766
              D  +    G +         ++ L+LS  +L     IP S +NL  +  + +   N 
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 767 LRGQIPLELSELNYLAIFNVSYNDLSGPTPNT 798
           L G IP  +++L  L    +++ ++SG  P+ 
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.8 bits (107), Expect = 7e-05
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 559 PSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQG--NIPQQLCHLRKI 616
           P+ L  SS L T D  +  + G +     +   +  L L G NL     IP  L +L  +
Sbjct: 21  PTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78

Query: 617 AIVDIS-YNLLDGSIPSCFTN 636
             + I   N L G IP     
Sbjct: 79  NFLYIGGINNLVGPIPPAIAK 99

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  176 bits (447), Expect = 6e-47
 Identities = 109/560 (19%), Positives = 175/560 (31%), Gaps = 70/560 (12%)

Query: 90  LKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNG 149
            K L++ FN           S   L  L L    +           +L +L  L L+GN 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGN- 86

Query: 150 LIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLD 209
                      ++ L             L +L +L      L       + +L  L+ L+
Sbjct: 87  ----------PIQSLALGA------FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 210 LTSNQLSGNLPISVFANLTSLEYLSLSGNNFQG--SFSLSVLAN-HSRLEVLQISRLQIE 266
           +  N +        F+NLT+LE+L LS N  Q      L VL         L +S   + 
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 267 TENFPWLPRFQLKVLNLRRCNISGTIP-------SFLQYQYDLRYIDLSHNNLAGTFPTW 319
                     +L  L LR    S  +        + L+    +     +  NL   F   
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE-KFDKS 249

Query: 320 LLQNNTKLEFLFL----FNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPEL 375
            L+    L          + +L  ++ L +   ++    + +     +   ++      L
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHL 309

Query: 376 VYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFG 435
             ++     F      S      L  L  +SN       +  L    SL F+++S N   
Sbjct: 310 ELVNCKFGQFPTLKLKS------LKRLTFTSNKGGNAFSEVDLP---SLEFLDLSRNGLS 360

Query: 436 GQIFPKY--MSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNF 493
            +          T L +L L+ N     +    L    L  LD  ++ L  Q+      F
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSE-FSVF 417

Query: 494 SNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNS 553
            +                  L NL     LDIS           FN  SSL  L +  NS
Sbjct: 418 LS------------------LRNLI---YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 554 LNGSIPSALFQS-SQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCH 612
              +    +F     L  LDL   +     P   N  S+L+ L +  N L+         
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516

Query: 613 LRKIAIVDISYNLLDGSIPS 632
           L  +  + +  N  D S P 
Sbjct: 517 LTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  158 bits (401), Expect = 7e-41
 Identities = 103/510 (20%), Positives = 185/510 (36%), Gaps = 50/510 (9%)

Query: 85  GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLD 144
            S  +L++L++              SL+ L++L L GN +      +     L +L+ L 
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ--SLALGAFSGLSSLQKLV 106

Query: 145 LSGNGL--IGSLTMQG----EKLELLNNKCREMN--ARICELKNLVELNLSWNKLDGSLP 196
                L  + +  +      ++L + +N  +          L NL  L+LS NK+     
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 197 QCLSNLTYLRV----LDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANH 252
             L  L  + +    LDL+ N ++  +    F  +  L  L+L  N    +   + +   
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 253 SRLEVLQISRLQIETEN---------FPWLPRFQLKVLNLRRCNISGT-IPSFLQYQYDL 302
           + LEV ++   +   E             L    ++   L   +     I        ++
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 303 RYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIG 362
               L    +           N   + L L N        L    + L  L  ++N   G
Sbjct: 285 SSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQFPTLKL--KSLKRLTFTSNK-GG 338

Query: 363 MLPDNFGMILPELVYLDMSQN--SFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTG 420
                    LP L +LD+S+N  SF+G    S   T  L +LDLS N     +   FL G
Sbjct: 339 NAFSEVD--LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL-G 394

Query: 421 CVSLAFMNVSHNYFGGQIFPKY---MSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDV 477
              L  ++  H+    +   ++   +S+  L +L ++                SL +L +
Sbjct: 395 LEQLEHLDFQHSNL--KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 478 SNNMLSGQLPHWV-GNFSNLDVLLMSRN---SLEGDVSVPLSNLQVARILDISENKLYGP 533
           + N         +     NL  L +S+     L       LS+LQV   L+++ N+L   
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV---LNMASNQLKSV 509

Query: 534 LEFSFNHSSSLWHLFLHNNSLNGSIPSALF 563
            +  F+  +SL  ++LH N  + S P   +
Sbjct: 510 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  108 bits (272), Expect = 9e-25
 Identities = 82/447 (18%), Positives = 155/447 (34%), Gaps = 29/447 (6%)

Query: 371 ILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVS 430
           +      LD+S N        S      L  LDLS       +          L+ + ++
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT 84

Query: 431 HNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNML-SGQLPHW 489
            N         +  ++ L  L   +          + +  +L  L+V++N++ S +LP +
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 490 VGNFSNLDVLLMSRN---SLEGDVSVPLSNLQVARI-LDISENKLYGPLEFSFNHSSSLW 545
             N +NL+ L +S N   S+       L  + +  + LD+S N +      +F     L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLH 203

Query: 546 HLFLHNNSLNGSIPSALF---QSSQLMTLDLRDNEFSGNIPPL-INEDSNLRALLLRGNN 601
            L L NN  + ++           ++  L L +    GN+     +    L  L +    
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 602 LQGN------IPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYT 655
           L         I      L  ++   +    ++      +   W  +E  +    F    T
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN--CKFGQFPT 321

Query: 656 LVVEHFPAISAYYNSTLNLIFSGEDNRELR----QRVEVKFMAKNRYESYKGGVLEYMTG 711
           L ++    ++   N      FS  D   L      R  + F        +    L+Y   
Sbjct: 322 LKLKSLKRLTFTSNK-GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY--- 377

Query: 712 LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRS-FSNLKMIESMDLSYNKLRGQ 770
           LDLS N +   + S    L++L  L+  H++L      S F +L+ +  +D+S+   R  
Sbjct: 378 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 771 IPLELSELNYLAIFNVSYNDLSGPTPN 797
                + L+ L +  ++ N        
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLP 463

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  102 bits (257), Expect = 8e-23
 Identities = 60/276 (21%), Positives = 96/276 (34%), Gaps = 39/276 (14%)

Query: 66  CCSWERIKCNVTTANYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLG 125
              W+ ++             LK LK L    N            L SL  L L  N L 
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLS 360

Query: 126 VGFKPMKVLPNLRNLEVLDLSGNGL--IGSLTMQGEKLELL---NNKCREMNARI--CEL 178
                 +      +L+ LDLS NG+  + S  +  E+LE L   ++  ++M+       L
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 179 KNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGN 238
           +NL+ L++S      +     + L+ L VL +  N    N    +F  L +L +L LS  
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 239 NFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQY 298
                               Q+ +L      F  L    L+VLN+    +          
Sbjct: 481 --------------------QLEQLSPTA--FNSLS--SLQVLNMASNQLKSVPDGIFDR 516

Query: 299 QYDLRYIDLSHNNLAGT------FPTWLLQNNTKLE 328
              L+ I L  N    +         WL +N+ K +
Sbjct: 517 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 552

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.0 bits (125), Expect = 6e-07
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 5/108 (4%)

Query: 712 LDLSSNELTGEIPSAIGYLQELHALNLSHNHL-SGSIPRSFSNLKMIESMDLSYNKLRGQ 770
           L      L       IG+L+ L  LN++HN + S  +P  FSNL  +E +DLS NK++  
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 771 IPLELSELNYLAIF----NVSYNDLSGPTPNTKQFANFDESNYRGNLN 814
              +L  L+ + +     ++S N ++   P   +     +   R N +
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 212

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.6 bits (116), Expect = 7e-06
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 1/88 (1%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPR-SFSNLKMIESMDLSY 764
           L  +  LD+S              L  L  L ++ N    +     F+ L+ +  +DLS 
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 765 NKLRGQIPLELSELNYLAIFNVSYNDLS 792
            +L    P   + L+ L + N++ N L 
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.6 bits (116), Expect = 7e-06
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 712 LDLSSNELTGEIPSAI-GYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQ 770
           L ++ N         I   L+ L  L+LS   L    P +F++L  ++ ++++ N+L+  
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509

Query: 771 IPLELSELNYLAIFNVSYNDLS 792
                  L  L    +  N   
Sbjct: 510 PDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 713 DLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIP 772
                    +IP  +        L+LS N L      SF +   ++ +DLS  +++    
Sbjct: 13  QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 773 LELSELNYLAIFNVSYNDLS 792
                L++L+   ++ N + 
Sbjct: 70  GAYQSLSHLSTLILTGNPIQ 89

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 19/62 (30%), Positives = 27/62 (43%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765
           L  +T LDLS  +L    P+A   L  L  LN++ N L       F  L  ++ + L  N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

Query: 766 KL 767
             
Sbjct: 529 PW 530

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  173 bits (439), Expect = 1e-44
 Identities = 102/570 (17%), Positives = 183/570 (32%), Gaps = 74/570 (12%)

Query: 74  CNVTTANYNNNG------SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVG 127
            +   A Y           L   + L + FN            L  L  L L      + 
Sbjct: 4   FDGRIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 128 FKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLS 187
               +   NL NL +LDL  +           K+  L+            L +L EL L 
Sbjct: 64  IDK-EAFRNLPNLRILDLGSS-----------KIYFLHPDA------FQGLFHLFELRLY 105

Query: 188 WNKLDGSL--PQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFS 245
           +  L  ++       NL  L  LDL+ NQ+        F  L SL+ +  S N       
Sbjct: 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF---- 161

Query: 246 LSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIP-SFLQYQYDLRY 304
                              +       L    L   +L   ++   +   + +     R 
Sbjct: 162 ------------------LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203

Query: 305 IDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGML 364
           + L   +++G   T  +  N         N   K           ++      +N     
Sbjct: 204 MVLEILDVSGNGWTVDITGN-------FSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256

Query: 365 PDNF-GMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVS 423
            + F G+    + +LD+S                 L  L+L+ N  + ++  +   G  +
Sbjct: 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDN 315

Query: 424 LAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLS 483
           L  +N+S+N  G      +  + ++A++ L  N      ++       L  LD+ +N L+
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

Query: 484 GQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYG-PLEFSFNHSS 542
                 +    ++  + +S N L     + L+    A ++ +SEN+L    + +      
Sbjct: 376 T-----IHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLDILYFLLRVP 426

Query: 543 SLWHLFLHNNSLNGSIPSALFQS-SQLMTLDLRDNEFSGNIPPLINED-----SNLRALL 596
            L  L L+ N  +             L  L L +N         +  D     S+L+ L 
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY 486

Query: 597 LRGNNLQGNIPQQLCHLRKIAIVDISYNLL 626
           L  N L    P    HL  +  + ++ N L
Sbjct: 487 LNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  165 bits (419), Expect = 3e-42
 Identities = 116/550 (21%), Positives = 193/550 (35%), Gaps = 84/550 (15%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDL 145
           +L  L+IL++G +            L  L  L L    L           NL+ L  LDL
Sbjct: 71  NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130

Query: 146 SGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLT-- 203
           S N  I SL +                    +L +L  ++ S N++       L  L   
Sbjct: 131 SKN-QIRSLYLHPS---------------FGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174

Query: 204 YLRVLDLTSNQLSGNLPISVFANL-----TSLEYLSLSGN--------NFQGSFSLSVLA 250
            L    L +N L   + +     +       LE L +SGN        NF  + S S   
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234

Query: 251 NHSRLEVLQISRLQ------IETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRY 304
           +      +  +          +   F  L R  ++ L+L    +        +   DL+ 
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294

Query: 305 IDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGL-----LHLPDSKRDLLHLVISNNN 359
           ++L++N +              L+ L L  N L  L       LP     + ++ +  N+
Sbjct: 295 LNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP----KVAYIDLQKNH 349

Query: 360 FIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLT 419
            I ++ D     L +L  LD+  N+       ++ +   +  + LS N     LPK  L 
Sbjct: 350 -IAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-TLPKINL- 401

Query: 420 GCVSLAFMNVSHNYFGG-QIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNA-PSLHILDV 477
              +   +++S N      I    + +  L  L LN N+F+    +   +  PSL  L +
Sbjct: 402 ---TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458

Query: 478 SNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFS 537
             NML                 L     L  DV   LS+LQV   L ++ N L       
Sbjct: 459 GENMLQ----------------LAWETELCWDVFEGLSHLQV---LYLNHNYLNSLPPGV 499

Query: 538 FNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLL 597
           F+H ++L  L L++N L   +      ++ L  LD+  N+     P +     +L  L +
Sbjct: 500 FSHLTALRGLSLNSNRLT-VLSHNDLPAN-LEILDISRNQLLAPNPDVF---VSLSVLDI 554

Query: 598 RGNNLQGNIP 607
             N       
Sbjct: 555 THNKFICECE 564

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  159 bits (404), Expect = 2e-40
 Identities = 115/735 (15%), Positives = 225/735 (30%), Gaps = 139/735 (18%)

Query: 178 LKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSG 237
           L     L LS+N +          L  L++L+L S      +    F NL +L  L L  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 238 NNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTI--PSF 295
           +                          +  + F  L    L  L L  C +S  +    +
Sbjct: 83  SKIY----------------------FLHPDAFQGLFH--LFELRLYFCGLSDAVLKDGY 118

Query: 296 LQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLH---LPDSKRDLLH 352
            +    L  +DLS N +   +          L+ +   +N +  +      P   + L  
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178

Query: 353 LVISNNNFIGMLPDNFGMIL-----PELVYLDMSQNSF------------EGSIPPSMGY 395
             ++ N+    +  ++G  +       L  LD+S N +              S   S+  
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238

Query: 396 TVRLLFLDLSSNNFSGELPKQFLTG--CVSLAFMNVSHNYFGGQIFPKYM--SMTQLAWL 451
              ++      +N   +  +    G    S+  +++SH +         +  ++  L  L
Sbjct: 239 AHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFV--FSLNSRVFETLKDLKVL 295

Query: 452 YLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVS 511
            L  N+     +E      +L +L++S N+L             +  + + +N +     
Sbjct: 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355

Query: 512 VPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTL 571
                L+  + LD+ +N L      + +   S+  +FL  N L  ++P     ++    +
Sbjct: 356 QTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLV-TLPKINLTAN---LI 406

Query: 572 DLRDNEFSGNIPPLINED-SNLRALLLRGNNLQGNIPQQLCH-LRKIAIVDISYNLLDGS 629
            L +N               +L+ L+L  N        Q       +  + +  N+L  +
Sbjct: 407 HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466

Query: 630 IPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVE 689
             +            D F G                                      ++
Sbjct: 467 WETELC--------WDVFEGL-----------------------------------SHLQ 483

Query: 690 VKFMAKNRYESYKGGVLEYMTG---LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGS 746
           V ++  N   S   GV  ++T    L L+SN LT  +         L  L++S N L   
Sbjct: 484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHND-LPANLEILDISRNQLLAP 541

Query: 747 IPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDE 806
            P  F +L     +D+++NK   +  L                       N     N   
Sbjct: 542 NPDVFVSLS---VLDITHNKFICECELS-------------------TFINWLNHTNVTI 579

Query: 807 SNYRGNLNLCGPAVLKNCSTDLPPPPPMTPAEEDESAIDMVAFNWSFAVSYVTVIVGLLA 866
           +    ++    P               ++    DE  +        F V  VT+ + L+ 
Sbjct: 580 AGPPADIYCVYPDSFSG-----VSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMT 634

Query: 867 LLFLNSYWHRQWFFL 881
           +L +  +    +   
Sbjct: 635 ILTVTKFRGFCFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 95.6 bits (238), Expect = 3e-20
 Identities = 78/474 (16%), Positives = 144/474 (30%), Gaps = 81/474 (17%)

Query: 334 NNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSM 393
                 L  +P        L++S N    +   +F   L +L  L++       +I    
Sbjct: 10  FYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPF-LEQLQLLELGSQYTPLTIDKEA 68

Query: 394 -GYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYM--SMTQLAW 450
                 L  LDL S+     L      G   L  + +        +       ++  L  
Sbjct: 69  FRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127

Query: 451 LYLNDNQFTG-RLEEGLLNAPSLHILDVSNNMLSGQLPH--WVGNFSNLDVLLMSRNSLE 507
           L L+ NQ     L        SL  +D S+N +     H         L    ++ NSL 
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187

Query: 508 GDVSVPLSNLQVA------RILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSA 561
             VSV               ILD+S N     +  +F+            N+++ S   +
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS------------NAISKSQAFS 235

Query: 562 LFQSSQLMTLDLRDNEFSGNIPPLI---NEDSNLRALLLRGNNLQGNIPQQLCHLRKIAI 618
           L  +  +M      +    +           S++R L L    +     +    L+ + +
Sbjct: 236 LILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294

Query: 619 VDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSG 678
           ++++YN +          I       + F G      L + +   +   Y+S        
Sbjct: 295 LNLAYNKI--------NKIAD-----EAFYGLDNLQVLNLSYNL-LGELYSSNF------ 334

Query: 679 EDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNL 738
               ++                           +DL  N +         +L++L  L+L
Sbjct: 335 YGLPKVAY-------------------------IDLQKNHIAIIQDQTFKFLEKLQTLDL 369

Query: 739 SHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLS 792
             N L+     +   +  I  + LS NKL   +P      N + +      +L 
Sbjct: 370 RDNALT-----TIHFIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLD 417

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 5e-04
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 5/82 (6%)

Query: 712 LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQI 771
                  LT ++P     L     L LS N++      SF  L+ ++ ++L        I
Sbjct: 9   AFYRFCNLT-QVPQV---LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 772 PLE-LSELNYLAIFNVSYNDLS 792
             E    L  L I ++  + + 
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIY 86

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  168 bits (428), Expect = 1e-44
 Identities = 94/519 (18%), Positives = 172/519 (33%), Gaps = 59/519 (11%)

Query: 111 LTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCRE 170
             ++ SL L  N +         L    NL+VL L  + +                    
Sbjct: 25  TAAMKSLDLSFNKITY--IGHGDLRACANLQVLILKSSRI------------------NT 64

Query: 171 MNARICE-LKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTS 229
           +       L +L  L+LS N L          L+ L+ L+L  N        S+F NLT+
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124

Query: 230 LEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET---ENFPWLPRFQLKVLNLRRC 286
           L+ L +              A  + L  L+I  L +     ++   +    +  L L   
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR--DIHHLTLHLS 182

Query: 287 NISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWL--LQNNTKLEFLFLFNNFL-----KG 339
             +  +  F      +RY++L   NLA    + L   + ++ ++ L    + L       
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242

Query: 340 LLHLPDSKRDLLHLVISNNNFIGMLPDNFGMI----------LPELVYLDMSQNSFEGSI 389
           LL L     +L  +   +    G+   N                 +  L + Q      +
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302

Query: 390 PPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMS---MT 446
                   ++  + + ++     +P  F     SL F+++S N    +            
Sbjct: 303 STVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361

Query: 447 QLAWLYLNDNQFT--GRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRN 504
            L  L L+ N      +  E LL   +L  LD+S N     +P        +  L +S  
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSST 420

Query: 505 SLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQ 564
            +     V     Q   +LD+S N     L+        L  L++  N L  ++P A   
Sbjct: 421 GIR---VVKTCIPQTLEVLDVSNNN----LDSFSLFLPRLQELYISRNKLK-TLPDASL- 471

Query: 565 SSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQ 603
              L+ + +  N+       + +  ++L+ + L  N   
Sbjct: 472 FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  166 bits (421), Expect = 1e-43
 Identities = 99/516 (19%), Positives = 182/516 (35%), Gaps = 61/516 (11%)

Query: 90  LKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNG 149
           +K L++ FN  +      L +  +L  L L+ + +           +L +LE LDLS N 
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN--TIEGDAFYSLGSLEHLDLSDN- 84

Query: 150 LIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDG-SLPQCLSNLTYLRVL 208
                      L  L++           L +L  LNL  N      +     NLT L+ L
Sbjct: 85  ----------HLSSLSSSW------FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128

Query: 209 DLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET- 267
            + + +    +    FA LTSL  L +   + + ++    L +   +  L +   +    
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFL 187

Query: 268 --ENFPWLPRFQ-LKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWL---L 321
                  L   + L++ +        +     +    ++ +    + L       L   L
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247

Query: 322 QNNTKLEFLFLFNNFLKGLLHLPDSKRD------------LLHLVISNNNFIGMLPDNFG 369
           +   +L  +   +  L GL     S+ D            +  L I        L   + 
Sbjct: 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307

Query: 370 MILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQ--FLTGCVSLAFM 427
            +L ++  + +  +           +   L FLDLS N    E  K         SL  +
Sbjct: 308 -LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366

Query: 428 NVSHNYFGGQIFPKY----MSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLS 483
            +S N+   +   K     +++  L  L ++ N F   + +       +  L++S+  + 
Sbjct: 367 VLSQNHL--RSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423

Query: 484 GQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSS 543
             +         L+VL +S N+L+   S+ L  LQ    L IS NKL    + S      
Sbjct: 424 -VVKT--CIPQTLEVLDVSNNNLD-SFSLFLPRLQE---LYISRNKLKTLPDASL--FPV 474

Query: 544 LWHLFLHNNSLNGSIPSALFQS-SQLMTLDLRDNEF 578
           L  + +  N L  S+P  +F   + L  + L  N +
Sbjct: 475 LLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  143 bits (363), Expect = 3e-36
 Identities = 79/456 (17%), Positives = 164/456 (35%), Gaps = 47/456 (10%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDL 145
           SL  L+ L++  N  S         L+SL  L L GN          + PNL NL+ L +
Sbjct: 72  SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY-QTLGVTSLFPNLTNLQTLRI 130

Query: 146 SGNGLIGSLTMQG-------EKLELLNNKCREMNAR-ICELKNLVELNLSWNKLDGSLPQ 197
                   +            +LE+     R   ++ +  ++++  L L  ++    L  
Sbjct: 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI 190

Query: 198 CLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNN---------------FQG 242
               L+ +R L+L    L+     S          +                      + 
Sbjct: 191 FADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249

Query: 243 SFSLSVLA--NHSRLEVLQISRLQIET-ENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQ 299
              LS +   + +   +   +  + +       +    ++ L++ +  +   + +     
Sbjct: 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL 309

Query: 300 YDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLL----HLVI 355
             ++ I + ++ +    P    Q+   LEFL L  N +        + +        LV+
Sbjct: 310 EKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368

Query: 356 SNNNFIGMLPDNFGMI--LPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGEL 413
           S N+ +  +     ++  L  L  LD+S+N+F   +P S  +  ++ FL+LSS      +
Sbjct: 369 SQNH-LRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VV 425

Query: 414 PKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLH 473
                    +L  ++VS+N      F   + + +L  LY++ N+    L +  L  P L 
Sbjct: 426 KTCIPQ---TLEVLDVSNNNL--DSFS--LFLPRLQELYISRNKLK-TLPDASL-FPVLL 476

Query: 474 ILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGD 509
           ++ +S N L           ++L  + +  N  +  
Sbjct: 477 VMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  133 bits (336), Expect = 9e-33
 Identities = 96/592 (16%), Positives = 184/592 (31%), Gaps = 113/592 (19%)

Query: 180 NLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNN 239
            +  L+LS+NK+       L     L+VL L S++++  +    F +L SLE+L LS N+
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNH 85

Query: 240 FQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISG-TIPSFLQY 298
                                    + +  F  L    LK LNL         + S    
Sbjct: 86  LS----------------------SLSSSWFGPLS--SLKYLNLMGNPYQTLGVTSLFPN 121

Query: 299 QYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGL-LHLPDSKRDLLHLVISN 357
             +L+ + + +               T L  L +    L+        S RD+ HL +  
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 358 NNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQF 417
           +     L + F  IL  + YL++   +       S      +             L  + 
Sbjct: 182 SE-SAFLLEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239

Query: 418 LTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDV 477
               + L    +  +        ++   T       N ++     E G +   ++  L +
Sbjct: 240 FNELLKLLRYILELSEV------EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293

Query: 478 SNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFS 537
               L   L         +                        + + +  +K++      
Sbjct: 294 PQFYLFYDLSTVYSLLEKV------------------------KRITVENSKVFLVPCSF 329

Query: 538 FNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLL 597
             H  SL  L L  N               ++   L+++   G  P       +L+ L+L
Sbjct: 330 SQHLKSLEFLDLSEN--------------LMVEEYLKNSACKGAWP-------SLQTLVL 368

Query: 598 RGNNLQ--GNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYT 655
             N+L+      + L  L+ +  +DIS N     +P                        
Sbjct: 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWP----------------EK 411

Query: 656 LVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLS 715
           +       ++      + ++ +      + Q +EV  ++ N  +S+    L  +  L +S
Sbjct: 412 MRF-----LNLSSTG-IRVVKTC-----IPQTLEVLDVSNNNLDSFSLF-LPRLQELYIS 459

Query: 716 SNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKL 767
            N+L   +P A      L  + +S N L       F  L  ++ + L  N  
Sbjct: 460 RNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  102 bits (255), Expect = 1e-22
 Identities = 51/364 (14%), Positives = 110/364 (30%), Gaps = 8/364 (2%)

Query: 446 TQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNS 505
             +  L L+ N+ T      L    +L +L + ++ ++        +  +L+ L +S N 
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 506 LEGDVSVPLSNLQVARILDISENKLYG-PLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQ 564
           L    S     L   + L++  N      +   F + ++L  L + N      I    F 
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 565 S-SQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISY 623
             + L  L+++           +    ++  L L  +     +      L  +  +++  
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 624 NLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRE 683
             L     S                    G  L  E F  +       L L     D+  
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAF---RGSVLTDESFNELLKLLRYILELSEVEFDDCT 262

Query: 684 LRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHL 743
           L    +      +            +  L +    L  ++ +    L+++  + + ++ +
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322

Query: 744 SGSIPRSFSNLKMIESMDLSYNKLRGQI---PLELSELNYLAIFNVSYNDLSGPTPNTKQ 800
                    +LK +E +DLS N +  +             L    +S N L       + 
Sbjct: 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382

Query: 801 FANF 804
               
Sbjct: 383 LLTL 386

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 93.3 bits (232), Expect = 7e-20
 Identities = 81/468 (17%), Positives = 151/468 (32%), Gaps = 76/468 (16%)

Query: 373 PELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHN 432
                 D    SF  SIP  +  T  +  LDLS N  +  +    L  C +L  + +  +
Sbjct: 5   DASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSS 60

Query: 433 YFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSG-QLPHWVG 491
                    + S+  L  L L+DN  +           SL  L++  N      +     
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 492 NFSNLDVLLMSRN----SLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHL 547
           N +NL  L +        +       L++L     L+I    L      S      + HL
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLN---ELEIKALSLRNYQSQSLKSIRDIHHL 177

Query: 548 FLHNNSLNGSIPSALFQSSQLMTLDLRDN---EFSGNIPPLINEDSNLRALLLRGNNLQG 604
            LH +     +       S +  L+LRD     F  +  P+    S ++ L  RG+ L  
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237

Query: 605 N-------IPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLV 657
                   + + +  L ++   D + N L    PS               +      T+ 
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV----------VSELGKVETVT 287

Query: 658 VEHFPAISAYYNSTLNLIFSGEDN-RELRQRVEVKFMAKNRYESYKGGVLEYMTG---LD 713
           +        Y    L+ ++S  +  + +        +  ++         +++     LD
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRIT-------VENSKVFLVPCSFSQHLKSLEFLD 340

Query: 714 LSSNELT-----------------------------GEIPSAIGYLQELHALNLSHNHLS 744
           LS N +                               +    +  L+ L +L++S N   
Sbjct: 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

Query: 745 GSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLS 792
             +P S    + +  ++LS   +R  +   +     L + +VS N+L 
Sbjct: 401 -PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 13/105 (12%), Positives = 33/105 (31%), Gaps = 1/105 (0%)

Query: 712 LDLSSNELTGEIP-SAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQ 770
           L + + E   EI       L  L+ L +    L     +S  +++ I  + L  ++    
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187

Query: 771 IPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNL 815
           + +    L+ +    +   +L+    +            +     
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  165 bits (420), Expect = 4e-44
 Identities = 102/498 (20%), Positives = 188/498 (37%), Gaps = 58/498 (11%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDL 145
           +L +     +G  + ++      T L  +T+L  +   +    K +  +  L NL  ++ 
Sbjct: 22  ALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGI----KSIDGVEYLNNLTQINF 75

Query: 146 SGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYL 205
           S N L          +  L N           L  LV++ ++ N++    P  L+NLT L
Sbjct: 76  SNNQL--------TDITPLKN-----------LTKLVDILMNNNQIADITP--LANLTNL 114

Query: 206 RVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQI 265
             L L +NQ++    I    NLT+L  L LS N       +S L+  + L+ L       
Sbjct: 115 TGLTLFNNQITD---IDPLKNLTNLNRLELSSNTIS---DISALSGLTSLQQLSFGNQVT 168

Query: 266 ETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNT 325
           + +    L    L+ L++    +S    S L    +L  +  ++N ++   P   L   T
Sbjct: 169 DLKPLANLT--TLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP---LGILT 221

Query: 326 KLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSF 385
            L+ L L  N LK +  L      L  L ++NN    + P +    L +L  L +  N  
Sbjct: 222 NLDELSLNGNQLKDIGTLASLTN-LTDLDLANNQISNLAPLSG---LTKLTELKLGANQI 277

Query: 386 EGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSM 445
               P  +     L  L+L+ N      P   ++   +L ++ +  N           S+
Sbjct: 278 SNISP--LAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP--VSSL 330

Query: 446 TQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNS 505
           T+L  L+  +N+ +      L N  +++ L   +N +S   P  + N + +  L ++  +
Sbjct: 331 TKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386

Query: 506 LEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS 565
                    +N+ +   +      L  P   S     S     +  N  +       +  
Sbjct: 387 WTNAPVNYKANVSIPNTVKNVTGALIAPATISDG--GSYTEPDITWNLPS-YTNEVSYTF 443

Query: 566 SQLMTLDLRDNEFSGNIP 583
           SQ +T+      FSG + 
Sbjct: 444 SQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  131 bits (331), Expect = 2e-32
 Identities = 85/476 (17%), Positives = 161/476 (33%), Gaps = 58/476 (12%)

Query: 199 LSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVL 258
            + L       L    ++  +  +   +L  +  L       +   S+  +   + L  +
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIK---SIDGVEYLNNLTQI 73

Query: 259 QISRLQIET-ENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFP 317
             S  Q+        L   +L  + +    I+   P  L    +L  + L +N +    P
Sbjct: 74  NFSNNQLTDITPLKNLT--KLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP 129

Query: 318 TWLLQNNTKLEFLFLFNNFLKGL-----------LHLPDSKRDLL---------HLVISN 357
              L+N T L  L L +N +  +           L   +   DL           L IS+
Sbjct: 130 ---LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 186

Query: 358 NNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQF 417
           N             L  L  L  + N      P  +G    L  L L+ N    ++    
Sbjct: 187 NKVSD--ISVLAK-LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIG--T 238

Query: 418 LTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDV 477
           L    +L  +++++N            +T+L  L L  NQ +      L    +L  L++
Sbjct: 239 LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLEL 294

Query: 478 SNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFS 537
           + N L    P  + N  NL  L +  N++      P+S+L   + L    NK+      +
Sbjct: 295 NENQLEDISP--ISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSDVSSLA 350

Query: 538 FNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLL 597
               +++  L   +N ++   P  L   +++  L L D  ++ N P     + ++   + 
Sbjct: 351 NL--TNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT-NAPVNYKANVSIPNTVK 405

Query: 598 RGNNLQGNIPQQLCHLRKIAIVDISYNLLD--GSIPSCFTNIWPWMEEGDPFNGFV 651
                    P  +         DI++NL      +   F+      +    F+G V
Sbjct: 406 NVTGAL-IAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTV 460

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  128 bits (324), Expect = 1e-31
 Identities = 91/382 (23%), Positives = 147/382 (38%), Gaps = 41/382 (10%)

Query: 85  GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLD 144
            +L +L  + +  N  ++  +  L +LT+LT L L  N +      +  L NL NL  L+
Sbjct: 87  KNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQI----TDIDPLKNLTNLNRLE 140

Query: 145 LSGNGL-----IGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCL 199
           LS N +     +  LT   ++L   N         +  L  L  L++S NK+       L
Sbjct: 141 LSSNTISDISALSGLT-SLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSD--ISVL 195

Query: 200 SNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQ 259
           + LT L  L  T+NQ+S    I+    LT+L+ LSL+GN  +    +  LA+ + L  L 
Sbjct: 196 AKLTNLESLIATNNQISD---ITPLGILTNLDELSLNGNQLK---DIGTLASLTNLTDLD 249

Query: 260 ISRLQIET-ENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPT 318
           ++  QI        L   +L  L L    IS   P  L     L  ++L+ N L    P 
Sbjct: 250 LANNQISNLAPLSGLT--KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP- 304

Query: 319 WLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYL 378
             + N   L +L L+ N +  +  +    + L  L   NN        +    L  + +L
Sbjct: 305 --ISNLKNLTYLTLYFNNISDISPVSSLTK-LQRLFFYNNKVSD--VSSLA-NLTNINWL 358

Query: 379 DMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQI 438
               N      P  +    R+  L L+   ++   P  +          N   N  G  I
Sbjct: 359 SAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APVNYKANVSIP---NTVKNVTGALI 412

Query: 439 FPKYMS-MTQLAWLYLNDNQFT 459
            P  +S         +  N  +
Sbjct: 413 APATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  125 bits (317), Expect = 9e-31
 Identities = 94/432 (21%), Positives = 163/432 (37%), Gaps = 40/432 (9%)

Query: 210 LTSNQLSGNLPISV---FANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIE 266
           L S  ++ + PI+       L       L   N   + S + L     +  LQ  RL I+
Sbjct: 3   LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQ---VTTLQADRLGIK 59

Query: 267 T-ENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNT 325
           + +   +L    L  +N     ++   P  L+    L  I +++N +A   P   L N T
Sbjct: 60  SIDGVEYLN--NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLT 112

Query: 326 KLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSF 385
            L  L LFNN +  +  L +    L  L +S+N             L  L  L       
Sbjct: 113 NLTGLTLFNNQITDIDPLKNLTN-LNRLELSSNTISD--ISALSG-LTSLQQLSFGNQV- 167

Query: 386 EGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSM 445
             +    +     L  LD+SSN  S       L    +L  +  ++N            +
Sbjct: 168 --TDLKPLANLTTLERLDISSNKVSDI---SVLAKLTNLESLIATNNQISDITPLG--IL 220

Query: 446 TQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNS 505
           T L  L LN NQ        L +  +L  LD++NN +S   P  +   + L  L +  N 
Sbjct: 221 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 276

Query: 506 LEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS 565
           +      PL+ L     L+++EN+L      S     +L +L L+ N+++   P  +   
Sbjct: 277 ISN--ISPLAGLTALTNLELNENQLEDISPISNL--KNLTYLTLYFNNISDISP--VSSL 330

Query: 566 SQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNL 625
           ++L  L   +N+ S      +   +N+  L    N +    P  L +L +I  + ++   
Sbjct: 331 TKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386

Query: 626 LDGSIPSCFTNI 637
              +  +   N+
Sbjct: 387 WTNAPVNYKANV 398

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.8 bits (130), Expect = 2e-07
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765
           L  +T L L +N+++   P  +  L  L  L L+ N L    P   SNLK +  + L +N
Sbjct: 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 319

Query: 766 KLRGQIPLELSELNYLAIFNVSYNDLSGPTP 796
            +    P  +S L  L       N +S  + 
Sbjct: 320 NISDISP--VSSLTKLQRLFFYNNKVSDVSS 348

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765
           L+ +T L      +       + YL  L  +N S+N L+   P    NL  +  + ++ N
Sbjct: 45  LDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN 100

Query: 766 KLRGQIPLELSELNYLAIFNVSYNDLSGPTP 796
           ++    P  L+ L  L    +  N ++   P
Sbjct: 101 QIADITP--LANLTNLTGLTLFNNQITDIDP 129

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 710 TGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRG 769
           T ++ S+N+LT   P  +  L +L  + +++N ++   P   +NL  +  + L  N++  
Sbjct: 71  TQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD 126

Query: 770 QIPLELSELNYLAIFNVSYNDLSGPTP 796
             P  L  L  L    +S N +S  + 
Sbjct: 127 IDP--LKNLTNLNRLELSSNTISDISA 151

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.3 bits (121), Expect = 2e-06
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 6/91 (6%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765
           L  +T L+L+ N+L     S I  L+ L  L L  N++S   P   S+L  ++ +    N
Sbjct: 286 LTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN 341

Query: 766 KLRGQIPLELSELNYLAIFNVSYNDLSGPTP 796
           K+       L+ L  +   +  +N +S  TP
Sbjct: 342 KVSD--VSSLANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765
           L  +  L L+ N+L       +  L  L  L+L++N +S   P   S L  +  + L  N
Sbjct: 220 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 275

Query: 766 KLRGQIPLELSELNYLAIFNVSYNDLSGPTP 796
           ++    P  L+ L  L    ++ N L   +P
Sbjct: 276 QISNISP--LAGLTALTNLELNENQLEDISP 304

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.8 bits (117), Expect = 6e-06
 Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 709 MTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLR 768
           +  LD+SSN+++    S +  L  L +L  ++N +S   P     L  ++ + L+ N+L+
Sbjct: 179 LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234

Query: 769 GQIPLELSELNYLAIFNVSYNDLSGPTP 796
                 L+ L  L   +++ N +S   P
Sbjct: 235 D--IGTLASLTNLTDLDLANNQISNLAP 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765
           L  +  L   +N+++    S++  L  ++ L+  HN +S   P   +NL  I  + L+  
Sbjct: 330 LTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385

Query: 766 KLRGQIPLELSELNYLAIFNVSYNDLSGPT 795
                     + ++           L  P 
Sbjct: 386 AWTNAPVNYKANVSIPNTVKNVTGALIAPA 415

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.3 bits (108), Expect = 7e-05
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765
           L  +  + +++N++    P  +  L  L  L L +N ++   P    NL  +  ++LS N
Sbjct: 89  LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 144

Query: 766 KLRGQIPLE-LSELNYLAIFN 785
            +     L  L+ L  L+  N
Sbjct: 145 TISDISALSGLTSLQQLSFGN 165

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 14/107 (13%), Positives = 36/107 (33%), Gaps = 4/107 (3%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765
           L  +  L    N+++   P  +  L  +  L L+    + +     +N+ +  ++     
Sbjct: 352 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409

Query: 766 KLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGN 812
            L    P  +S+       ++++N  S     +  F+          
Sbjct: 410 AL--IAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTT 454

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 9e-04
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 7/91 (7%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765
           L  +  L+LSSN ++    SA+  L  L  L+  +        +  +NL  +E +D+S N
Sbjct: 133 LTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSN 187

Query: 766 KLRGQIPLELSELNYLAIFNVSYNDLSGPTP 796
           K+       L++L  L     + N +S  TP
Sbjct: 188 KVSD--ISVLAKLTNLESLIATNNQISDITP 216

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  138 bits (348), Expect = 1e-34
 Identities = 67/499 (13%), Positives = 142/499 (28%), Gaps = 62/499 (12%)

Query: 133 VLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLD 192
           +  N    ++  ++ + L  +L    +                    N+ EL+LS N L 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSA-----------------WNVKELDLSGNPLS 47

Query: 193 GSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANH 252
                 L+  T L +L+L+SN L          +L++L  L L+ N       +  L   
Sbjct: 48  QISAADLAPFTKLELLNLSSNVLYE---TLDLESLSTLRTLDLNNNY------VQELLVG 98

Query: 253 SRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNL 312
             +E L  +   I   +         K + L    I+         +  ++Y+DL  N +
Sbjct: 99  PSIETLHAANNNISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

Query: 313 AGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMIL 372
                  L  ++  LE L L  NF+  +         L  L +S+N  +  +   F    
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNK-LAFMGPEFQS-A 213

Query: 373 PELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHN 432
             + ++ +  N     I  ++ ++  L   DL  N F     + F +    +        
Sbjct: 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV-------- 264

Query: 433 YFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGN 492
                               +          +         +              +   
Sbjct: 265 ------------------QTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADR 306

Query: 493 FSNLDVLLMSRNSLEGDVSVPLSNLQVA----RILDISENKLYGPLEFSFNHSSSLWHLF 548
              L     +  S +G  +  L   +      R +D  + +    ++       +   L 
Sbjct: 307 LIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLE 366

Query: 549 LHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQ 608
               +L+  + +     ++L     +             +        +     +  + Q
Sbjct: 367 QKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQ 426

Query: 609 QLCHLRKIAIVDISYNLLD 627
           Q      I   D+  +   
Sbjct: 427 QSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  129 bits (327), Expect = 6e-32
 Identities = 79/452 (17%), Positives = 149/452 (32%), Gaps = 45/452 (9%)

Query: 85  GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLD 144
            +  + KI  +  +S  ++L  L  S  ++  L L GN L         L     LE+L+
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ--ISAADLAPFTKLELLN 64

Query: 145 LSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTY 204
           LS N L  +L ++                    L  L  L+L+ N +     Q L     
Sbjct: 65  LSSNVLYETLDLES-------------------LSTLRTLDLNNNYV-----QELLVGPS 100

Query: 205 LRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQ 264
           +  L   +N +S  +  S      +   + L+ N              SR++ L +   +
Sbjct: 101 IETLHAANNNIS-RVSCSRGQGKKN---IYLANNKIT-MLRDLDEGCRSRVQYLDLKLNE 155

Query: 265 IETENFPWLPRF--QLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQ 322
           I+T NF  L      L+ LNL+   I   +   + +   L+ +DLS N LA   P    Q
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAK-LKTLDLSSNKLAFMGPE--FQ 211

Query: 323 NNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQ 382
           +   + ++ L NN L  +       ++L H  +  N F      +F      +  +    
Sbjct: 212 SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

Query: 383 NSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPK- 441
                 +         +  L         +LP  F    ++L     +     G    + 
Sbjct: 272 VK---KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERL 328

Query: 442 ---YMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDV 498
                +  +   +     Q+   +++  L   +   L+     L  Q+ +     + LD 
Sbjct: 329 ECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDG 388

Query: 499 LLMSRNSLEGDVSVPLSNLQVARILDISENKL 530
            L        ++          ++L     + 
Sbjct: 389 TLQQAVGQI-ELQHATEEQSPLQLLRAIVKRY 419

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  128 bits (324), Expect = 1e-31
 Identities = 69/452 (15%), Positives = 136/452 (30%), Gaps = 33/452 (7%)

Query: 85  GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLD 144
            S   +K L++  N  S+     L   T L  L L  N L         L +L  L  LD
Sbjct: 31  QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL----YETLDLESLSTLRTLD 86

Query: 145 LSGNGL--IGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNL 202
           L+ N +  +       E L   NN    ++      +    + L+ NK+           
Sbjct: 87  LNNNYVQELLVGP-SIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCR 143

Query: 203 TYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISR 262
           + ++ LDL  N++       + A+  +LE+L+L  N       +      ++L+ L +S 
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSS 200

Query: 263 LQIET--ENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWL 320
            ++      F       +  ++LR   +   I   L++  +L + DL  N          
Sbjct: 201 NKLAFMGPEFQSAAG--VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257

Query: 321 LQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDM 380
              N ++    +    +K L    + +  +  L          LP  F      L+ L  
Sbjct: 258 FSKNQRV--QTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF---ADRLIALKR 312

Query: 381 SQNSFE-------GSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNY 433
            +++           +        R   +D     +   +  Q      +   +      
Sbjct: 313 KEHALLSGQGSETERLECERENQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKKA 371

Query: 434 FGGQI---FPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWV 490
              Q+      +  +       +   +     EE         I+     M   Q     
Sbjct: 372 LDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQN 431

Query: 491 GNFSNLDVLLMSRNSLEGDVSVPLSNLQVARI 522
               + D+       L  + +        A +
Sbjct: 432 NAIRDWDMYQHKETQLAEENARLKKLNGEADL 463

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  126 bits (318), Expect = 8e-31
 Identities = 65/448 (14%), Positives = 139/448 (31%), Gaps = 52/448 (11%)

Query: 194 SLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHS 253
           ++ +   N    ++  +T + L      S+  +  +++ L LSGN               
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLS------------ 47

Query: 254 RLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLA 313
                     QI   +       +L++LNL    +             LR +DL++N + 
Sbjct: 48  ----------QISAADLAPFT--KLELLNLSSNVLY-ETLDLESLS-TLRTLDLNNNYVQ 93

Query: 314 GTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILP 373
                  L     +E L   NN +  +       +   ++ ++NN  I ML D       
Sbjct: 94  E------LLVGPSIETLHAANNNISRV--SCSRGQGKKNIYLANNK-ITMLRDLDEGCRS 144

Query: 374 ELVYLDMSQNSFEG-SIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHN 432
            + YLD+  N  +  +       +  L  L+L  N       +        L  +++S N
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA---KLKTLDLSSN 201

Query: 433 YFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLS-GQLPHWVG 491
                + P++ S   + W+ L +N+    +E+ L  + +L   D+  N    G L  +  
Sbjct: 202 KL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259

Query: 492 NFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHN 551
               +  +  ++ +++           V  +                +   +L       
Sbjct: 260 KNQRVQTV--AKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHAL 317

Query: 552 NSLNGS----IPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIP 607
            S  GS    +       ++   +D    ++   I  +         L  +   L   + 
Sbjct: 318 LSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVS 377

Query: 608 ---QQLCHLRKIAIVDISYNLLDGSIPS 632
              +    L       +    L  +   
Sbjct: 378 NGRRAHAELDGTLQQAVGQIELQHATEE 405

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  116 bits (293), Expect = 1e-27
 Identities = 67/450 (14%), Positives = 131/450 (29%), Gaps = 51/450 (11%)

Query: 372 LPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSH 431
                   ++ +S + ++         +  LDLS N  S ++    L     L  +N+S 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 432 NYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVG 491
           N           S++ L  L LN+N         LL  PS+  L  +NN +S ++     
Sbjct: 68  NVL--YETLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVS--CS 117

Query: 492 NFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYG-PLEFSFNHSSSLWHLFLH 550
                  + ++ N +     +        + LD+  N++           S +L HL L 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 551 NNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQL 610
            N +   +   +  +  L TLDL  N+ +  + P     + +  + LR N L   I + L
Sbjct: 178 YNFIY-DVKGQVVFAK-LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233

Query: 611 CHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNS 670
              + +   D+  N                    D F+      T+  +    ++     
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLR------------DFFSKNQRVQTVAKQTVKKLTGQNEE 281

Query: 671 TLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELT-------GEI 723
              +   G                    E       + +  L    + L          +
Sbjct: 282 ECTVPTLGHYGA-------------YCCEDLPAPFADRLIALKRKEHALLSGQGSETERL 328

Query: 724 PSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPL---ELSELNY 780
                       ++         I +     +   +++     L  Q+       +EL+ 
Sbjct: 329 ECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDG 388

Query: 781 LAIFNVSYNDLSGPTPNTKQFANFDESNYR 810
                V   +L   T              R
Sbjct: 389 TLQQAVGQIELQHATEEQSPLQLLRAIVKR 418

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 36/237 (15%), Positives = 77/237 (32%), Gaps = 34/237 (14%)

Query: 557 SIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKI 616
           +I       ++     + D+     +  L     N++ L L GN L       L    K+
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 617 AIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIF 676
            ++++S N+L  ++                        TL       +    N  +  + 
Sbjct: 61  ELLNLSSNVLYETLD------------------LESLSTLRT-----LDLNNNY-VQELL 96

Query: 677 SGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHAL 736
            G     L         A N          +    + L++N++T       G    +  L
Sbjct: 97  VGPSIETLH-------AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 737 NLSHNHLSG-SIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLS 792
           +L  N +   +     ++   +E ++L YN +   +  ++     L   ++S N L+
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.7 bits (116), Expect = 7e-06
 Identities = 13/74 (17%), Positives = 26/74 (35%)

Query: 723 IPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLA 782
           I              ++ + L  ++     +   ++ +DLS N L      +L+    L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 783 IFNVSYNDLSGPTP 796
           + N+S N L     
Sbjct: 62  LLNLSSNVLYETLD 75

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  131 bits (333), Expect = 1e-33
 Identities = 81/400 (20%), Positives = 147/400 (36%), Gaps = 61/400 (15%)

Query: 114 LTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQG----EKLELLNNKCR 169
             +L      +   F       +L       L    +   +T +      KL +   K  
Sbjct: 2   AATLATLPAPINQIFP----DADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVA 57

Query: 170 EMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTS 229
            +   I  L NL  LNL+ N++    P  LSNL  L  L + +N+++    IS   NLT+
Sbjct: 58  SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD---ISALQNLTN 111

Query: 230 LEYLSLSGNNFQGSFSLSVLANHSRLEVLQIS--RLQIETENFPWLPRFQLKVLNLRRCN 287
           L  L L+ +N      +S LAN +++  L +       +      +    L  L +    
Sbjct: 112 LRELYLNEDNIS---DISPLANLTKMYSLNLGANHNLSDLSPLSNMT--GLNYLTVTESK 166

Query: 288 ISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSK 347
           +    P  +    DL  + L++N +    P   L + T L +   + N +  +  + +  
Sbjct: 167 VKDVTP--IANLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITDITPVANMT 221

Query: 348 RDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSN 407
           R L  L I NN    + P      L +L +L++  N        ++    +L  L++ SN
Sbjct: 222 R-LNSLKIGNNKITDLSPLAN---LSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSN 275

Query: 408 NFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLL 467
             S                                 +++QL  L+LN+NQ      E + 
Sbjct: 276 QISD---------------------------ISVLNNLSQLNSLFLNNNQLGNEDMEVIG 308

Query: 468 NAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLE 507
              +L  L +S N ++   P  + + S +D    +   ++
Sbjct: 309 GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  126 bits (320), Expect = 6e-32
 Identities = 73/332 (21%), Positives = 134/332 (40%), Gaps = 32/332 (9%)

Query: 85  GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLD 144
             L+ +  L +     +   +  +  LT+L  L L GN +      +  L NL  L  L 
Sbjct: 41  EELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQI----TDISPLSNLVKLTNLY 94

Query: 145 LSGNGL-----IGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCL 199
           +  N +     + +LT    +L L  +   +++  +  L  +  LNL  N    S    L
Sbjct: 95  IGTNKITDISALQNLT-NLRELYLNEDNISDISP-LANLTKMYSLNLGANHN-LSDLSPL 151

Query: 200 SNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQ 259
           SN+T L  L +T +++     ++  ANLT L  LSL+ N  +    +S LA+ + L    
Sbjct: 152 SNMTGLNYLTVTESKVKD---VTPIANLTDLYSLSLNYNQIE---DISPLASLTSLHYFT 205

Query: 260 ISRLQIET-ENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPT 318
               QI        +   +L  L +    I+   P  L     L ++++  N ++     
Sbjct: 206 AYVNQITDITPVANMT--RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA- 260

Query: 319 WLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYL 378
             +++ TKL+ L + +N +  +  L ++   L  L ++NN       +  G  L  L  L
Sbjct: 261 --VKDLTKLKMLNVGSNQISDISVL-NNLSQLNSLFLNNNQLGNEDMEVIGG-LTNLTTL 316

Query: 379 DMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFS 410
            +SQN      P  +    ++   D ++    
Sbjct: 317 FLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  114 bits (289), Expect = 7e-28
 Identities = 81/421 (19%), Positives = 141/421 (33%), Gaps = 79/421 (18%)

Query: 160 KLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNL 219
            L  L     ++     +L   +   L    +   +      L  +  L +   +++   
Sbjct: 4   TLATLPAPINQIFP-DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS-- 58

Query: 220 PISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET-ENFPWLPRFQL 278
            I     LT+LEYL+L+GN       +S L+N  +L  L I   +I        L    L
Sbjct: 59  -IQGIEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTNKITDISALQNLT--NL 112

Query: 279 KVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLK 338
           + L L   NIS    S L     +  ++L  N+         L N T L +L +  + +K
Sbjct: 113 RELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVK 168

Query: 339 GLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVR 398
            +                               L +L  L ++ N  E   P  +     
Sbjct: 169 DV-------------------------TPIAN-LTDLYSLSLNYNQIEDISP--LASLTS 200

Query: 399 LLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQF 458
           L +     N  +                                 +MT+L  L + +N+ 
Sbjct: 201 LHYFTAYVNQITD---------------------------ITPVANMTRLNSLKIGNNKI 233

Query: 459 TGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQ 518
           T      L N   L  L++  N +S    + V + + L +L +  N +  D+S  L+NL 
Sbjct: 234 TD--LSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS-DIS-VLNNLS 287

Query: 519 VARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEF 578
               L ++ N+L           ++L  LFL  N +    P  L   S++ + D  +   
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

Query: 579 S 579
            
Sbjct: 346 K 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  113 bits (285), Expect = 2e-27
 Identities = 77/395 (19%), Positives = 144/395 (36%), Gaps = 55/395 (13%)

Query: 233 LSLSGNNFQGSFSLSVLANHSRLEVLQISRLQI-ETENFPWLPRFQLKVLNLRRCNISGT 291
           L+         F  + LA         + +  + +      L    +  L +    +   
Sbjct: 5   LATLPAPINQIFPDADLAE---GIRAVLQKASVTDVVTQEELE--SITKLVVAGEKV--A 57

Query: 292 IPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLL 351
               ++Y  +L Y++L+ N +    P   L N  KL  L++  N +  +  L +      
Sbjct: 58  SIQGIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDISALQN------ 108

Query: 352 HLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSG 411
                               L  L  L +++++     P  +    ++  L+L +N+   
Sbjct: 109 --------------------LTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS 146

Query: 412 ELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPS 471
           +L    L+    L ++ V+ +           ++T L  L LN NQ        L +  S
Sbjct: 147 DLS--PLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIED--ISPLASLTS 200

Query: 472 LHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLY 531
           LH      N ++   P  V N + L+ L +  N +      PL+NL     L+I  N++ 
Sbjct: 201 LHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQIS 256

Query: 532 GPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSN 591
                     + L  L + +N ++    S L   SQL +L L +N+       +I   +N
Sbjct: 257 DINAVKDL--TKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312

Query: 592 LRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLL 626
           L  L L  N++    P  L  L K+   D +  ++
Sbjct: 313 LTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  102 bits (256), Expect = 1e-23
 Identities = 61/354 (17%), Positives = 129/354 (36%), Gaps = 27/354 (7%)

Query: 278 LKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFL 337
              L      I+   P       +     L   ++         +    +  L +    +
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKV 56

Query: 338 KGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTV 397
             +  + +   +L +L ++ N    + P +    L +L  L +  N    +   ++    
Sbjct: 57  ASIQGI-EYLTNLEYLNLNGNQITDISPLSN---LVKLTNLYIGTNKI--TDISALQNLT 110

Query: 398 RLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQ 457
            L  L L+ +N S   P   L     +  +N+  N+    +     +MT L +L + +++
Sbjct: 111 NLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESK 166

Query: 458 FTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNL 517
                   + N   L+ L ++ N +    P  + + ++L       N +      P++N+
Sbjct: 167 VKD--VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD--ITPVANM 220

Query: 518 QVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNE 577
                L I  NK+      +    S L  L +  N ++    +A+   ++L  L++  N+
Sbjct: 221 TRLNSLKIGNNKITDLSPLANL--SQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQ 276

Query: 578 FSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIP 631
            S +I  L N  S L +L L  N L     + +  L  +  + +S N +    P
Sbjct: 277 IS-DISVLNNL-SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 2e-08
 Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765
           L  +  L++ SN+++    S +  L +L++L L++N L          L  + ++ LS N
Sbjct: 264 LTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321

Query: 766 KLRGQIPLELSELNYLAIFNVSYNDLS 792
            +    P  L+ L+ +   + +   + 
Sbjct: 322 HITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.3 bits (129), Expect = 1e-07
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 712 LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQI 771
           L++ +N+++    +A+  L +L  LN+  N +S       +NL  + S+ L+ N+L  + 
Sbjct: 248 LEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNED 303

Query: 772 PLELSELNYLAIFNVSYNDLSGPTP 796
              +  L  L    +S N ++   P
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 7/88 (7%)

Query: 710 TGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRG 769
             L+L +N       S +  +  L+ L ++ + +    P   +NL  + S+ L+YN++  
Sbjct: 135 YSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED 191

Query: 770 QIPLE-LSELNYLAIFNVSYNDLSGPTP 796
             PL  L+ L+Y        N ++  TP
Sbjct: 192 ISPLASLTSLHYF---TAYVNQITDITP 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 6/91 (6%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765
           LE +T L ++  ++       I YL  L  LNL+ N ++   P   SNL  + ++ +  N
Sbjct: 43  LESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN 98

Query: 766 KLRGQIPLELSELNYLAIFNVSYNDLSGPTP 796
           K+       L  L  L    ++ +++S  +P
Sbjct: 99  KI--TDISALQNLTNLRELYLNEDNISDISP 127

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.7 bits (117), Expect = 4e-06
 Identities = 18/91 (19%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765
           L  +       N++T   P  +  +  L++L + +N ++   P   +NL  +  +++  N
Sbjct: 198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN 253

Query: 766 KLRGQIPLELSELNYLAIFNVSYNDLSGPTP 796
           ++   I   + +L  L + NV  N +S  + 
Sbjct: 254 QISD-IN-AVKDLTKLKMLNVGSNQISDISV 282

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.3 bits (116), Expect = 7e-06
 Identities = 16/86 (18%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 712 LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQI 771
           L ++ +++     + I  L +L++L+L++N +    P   ++L  +       N++    
Sbjct: 160 LTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT 215

Query: 772 PLE-LSELNYLAIFNVSYNDLSGPTP 796
           P+  ++ LN L    +  N ++  +P
Sbjct: 216 PVANMTRLNSL---KIGNNKITDLSP 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.9 bits (115), Expect = 8e-06
 Identities = 20/92 (21%), Positives = 47/92 (51%), Gaps = 7/92 (7%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765
           L  +  L L+ + ++    S +  L ++++LNL  NH    +    SN+  +  + ++ +
Sbjct: 109 LTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTES 165

Query: 766 KLRGQIPLE-LSELNYLAIFNVSYNDLSGPTP 796
           K++   P+  L++L  L   +++YN +   +P
Sbjct: 166 KVKDVTPIANLTDLYSL---SLNYNQIEDISP 194

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 3e-05
 Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 6/91 (6%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765
           L       L    +T  +      L+ +  L ++   ++ SI      L  +E ++L+ N
Sbjct: 21  LAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGN 76

Query: 766 KLRGQIPLELSELNYLAIFNVSYNDLSGPTP 796
           ++    P  LS L  L    +  N ++  + 
Sbjct: 77  QITDISP--LSNLVKLTNLYIGTNKITDISA 105

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.6 bits (109), Expect = 4e-05
 Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 704 GVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLS 763
             L  +  L+L+ N++T   P  +  L +L  L +  N ++     +  NL  +  + L+
Sbjct: 63  EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLN 118

Query: 764 YNKLRGQIPLELSELNYLAIFNVSYNDLSG 793
            + +    P  L+ L  +   N+  N    
Sbjct: 119 EDNISDISP--LANLTKMYSLNLGANHNLS 146

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  129 bits (327), Expect = 5e-32
 Identities = 97/486 (19%), Positives = 175/486 (36%), Gaps = 74/486 (15%)

Query: 83  NNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGN------NLGVGFKPMKVLP- 135
              ++K        ++ +  +  P       +    L          L +    +  LP 
Sbjct: 29  EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88

Query: 136 NLRNLEVLDLSGNGL------IGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWN 189
              +LE L  S N L        SL      L + NN  + ++        L  L +S N
Sbjct: 89  LPPHLESLVASCNSLTELPELPQSLK----SLLVDNNNLKALSDLP---PLLEYLGVSNN 141

Query: 190 KLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVL 249
           +L+  LP+ L N ++L+++D+ +N L       +     SLE+++   N  +    L  L
Sbjct: 142 QLE-KLPE-LQNSSFLKIIDVDNNSLK-----KLPDLPPSLEFIAAGNNQLE---ELPEL 191

Query: 250 ANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSH 309
            N   L  +      ++    P LP   L+ +      +   +P      + L  I   +
Sbjct: 192 QNLPFLTAIYADNNSLKK--LPDLP-LSLESIVAGNNILE-ELPELQNLPF-LTTIYADN 246

Query: 310 NNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFG 369
           N L  T P         LE L + +N+L     LP+  + L  L +S N F G L +   
Sbjct: 247 NLLK-TLPDLP----PSLEALNVRDNYLT---DLPELPQSLTFLDVSENIFSG-LSE--- 294

Query: 370 MILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNV 429
            + P L YL+ S N    S+         L  L++S+N    ELP         L  +  
Sbjct: 295 -LPPNLYYLNASSNEIR-SLCDLPP---SLEELNVSNNKLI-ELPA----LPPRLERLIA 344

Query: 430 SHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHW 489
           S N+      P+      L  L++  N       +      S+  L +++++    +P  
Sbjct: 345 SFNHL--AEVPE--LPQNLKQLHVEYNPLR-EFPDIP---ESVEDLRMNSHLAE--VPEL 394

Query: 490 VGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFL 549
             N   L V     N L  +      +++    L ++  ++  P EF+   +  L     
Sbjct: 395 PQNLKQLHV---ETNPLR-EFPDIPESVED---LRMNSERVVDPYEFAHETTDKLEDDVF 447

Query: 550 HNNSLN 555
            ++  +
Sbjct: 448 EHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  127 bits (320), Expect = 3e-31
 Identities = 110/522 (21%), Positives = 177/522 (33%), Gaps = 83/522 (15%)

Query: 110 SLTSLTSLFLEGNNLGVGFKPMKVLP----NLRNLEVLDLSGNGLIGSLTMQGEKLELLN 165
           S T L       +NL         +P    N+++      + +    +        E   
Sbjct: 9   SNTFLQEPLRHSSNL-------TEMPVEAENVKSKTEYYNAWSEWERNA--PPGNGEQRE 59

Query: 166 NKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFA 225
                +  R C  +   EL L+   L  SLP+   +L  L     + N L+  LP  +  
Sbjct: 60  MAVSRL--RDCLDRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELP-ELPQ 111

Query: 226 NLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET-ENFPWLPRFQLKVLNLR 284
           +L SL   + +         L        LE L +S  Q+E            LK++++ 
Sbjct: 112 SLKSLLVDNNNLKALSDLPPL--------LEYLGVSNNQLEKLPELQNSS--FLKIIDVD 161

Query: 285 RCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLP 344
             ++   +P        L +I   +N L    P   LQN   L  ++  NN LK    LP
Sbjct: 162 NNSLK-KLPDLPP---SLEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLK---KLP 211

Query: 345 DSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDL 404
           D    L  +V  NN  +  LP+     LP L  +    N  + ++P        L  L++
Sbjct: 212 DLPLSLESIVAGNNI-LEELPELQN--LPFLTTIYADNNLLK-TLPDLPP---SLEALNV 264

Query: 405 SSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEE 464
             N  + +LP+       SL F++VS N F      +      L +L  + N+    L +
Sbjct: 265 RDNYLT-DLPELPQ----SLTFLDVSENIF--SGLSE--LPPNLYYLNASSNEIR-SLCD 314

Query: 465 GLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILD 524
                PSL  L+VSNN L  +LP        L     S N L  +V     NL+    L 
Sbjct: 315 LP---PSLEELNVSNNKLI-ELPALPPRLERLIA---SFNHLA-EVPELPQNLKQ---LH 363

Query: 525 ISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPP 584
           +  N L       F            N+ L   +P        L  L +  N      P 
Sbjct: 364 VEYNPLR-----EFPDIPESVEDLRMNSHLA-EVPELP---QNLKQLHVETNPLR-EFPD 413

Query: 585 LINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLL 626
           +     ++  L +    +            K+      ++  
Sbjct: 414 IPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  122 bits (308), Expect = 1e-29
 Identities = 107/521 (20%), Positives = 171/521 (32%), Gaps = 77/521 (14%)

Query: 84  NGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVL 143
           N S   L+      ++    +     ++ S T  +   +         +      N E  
Sbjct: 7   NVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEW-------ERNAPPGNGEQR 58

Query: 144 DLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLT 203
           +++ + L   L  Q  +LEL N     +        +L  L  S N L   LP+   +L 
Sbjct: 59  EMAVSRLRDCLDRQAHELELNNLGLSSLPE---LPPHLESLVASCNSLT-ELPELPQSLK 114

Query: 204 YLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRL 263
            L V +     LS   P         LEYL +S N  +    L  L N S L+++ +   
Sbjct: 115 SLLVDNNNLKALSDLPP--------LLEYLGVSNNQLE---KLPELQNSSFLKIIDVDNN 163

Query: 264 QIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQN 323
            ++    P LP   L+ +      +   +P        L  I   +N+L    P      
Sbjct: 164 SLKK--LPDLPP-SLEFIAAGNNQLE-ELPELQNLP-FLTAIYADNNSLK-KLPDLP--- 214

Query: 324 NTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQN 383
              LE +   NN L+ L  L +    L  +   NN  +  LPD      P L  L++  N
Sbjct: 215 -LSLESIVAGNNILEELPELQNLPF-LTTIYADNNL-LKTLPDL----PPSLEALNVRDN 267

Query: 384 SFEGSIPPSMGYTVRLLFLDLSSNNFSG--ELPKQFLTGCVSLAFMNVSHNYFGGQIFPK 441
                +P        L FLD+S N FSG  ELP        +L ++N S N    +    
Sbjct: 268 YLT-DLPELPQ---SLTFLDVSENIFSGLSELPP-------NLYYLNASSNEI--RSLCD 314

Query: 442 YMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLM 501
                 L  L +++N+    L       P L  L  S N L+ ++P    N   L V   
Sbjct: 315 --LPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLA-EVPELPQNLKQLHV--- 364

Query: 502 SRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSA 561
             N L      P           + + ++   L        +L  L +  N L    P  
Sbjct: 365 EYNPLR---EFPDI------PESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDI 414

Query: 562 LFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNL 602
                 +  L +                  L   +   ++ 
Sbjct: 415 P---ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 88.9 bits (221), Expect = 1e-18
 Identities = 80/447 (17%), Positives = 153/447 (34%), Gaps = 63/447 (14%)

Query: 340 LLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRL 399
            ++  +     L   + +++ +  +P      +        + + +E + PP  G    +
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLTEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 400 LFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFT 459
               L                      + +++        P+      L  L  + N  T
Sbjct: 61  AVSRLRDCLDR------------QAHELELNNLGL--SSLPE--LPPHLESLVASCNSLT 104

Query: 460 GRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVP-LSNLQ 518
             L E   +  SL + + +   LS   P        L+ L +S N LE    +P L N  
Sbjct: 105 -ELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE---KLPELQNSS 153

Query: 519 VARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEF 578
             +I+D+  N L    +   +   SL  +   NN L   +P  L     L  +   +N  
Sbjct: 154 FLKIIDVDNNSL----KKLPDLPPSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSL 207

Query: 579 SGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIW 638
              +P L     +L +++   N L+     +L +L  +  +    NLL  ++P    ++ 
Sbjct: 208 K-KLPDLP---LSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLL-KTLPDLPPSLE 260

Query: 639 PWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRY 698
                 +           + +    +    N    L        EL   +     + N  
Sbjct: 261 ALNVRDNYLTDL----PELPQSLTFLDVSENIFSGL-------SELPPNLYYLNASSNEI 309

Query: 699 ESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIE 758
            S        +  L++S+N+L  E+P+    L+ L     S NHL+  +P    NLK   
Sbjct: 310 RSLCDL-PPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA-EVPELPQNLK--- 360

Query: 759 SMDLSYNKLRGQIPLELSELNYLAIFN 785
            + + YN LR + P     +  L + +
Sbjct: 361 QLHVEYNPLR-EFPDIPESVEDLRMNS 386

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 33/226 (14%), Positives = 65/226 (28%), Gaps = 57/226 (25%)

Query: 582 IPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWM 641
           I P    ++ L+  L   +NL   +P +  +++       +++  + + P          
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQ---- 57

Query: 642 EEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESY 701
                         + V             L L  +      L +               
Sbjct: 58  ------------REMAVSRLRDCLDRQAHELEL--NNLGLSSLPE--------------- 88

Query: 702 KGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPR------------ 749
              +  ++  L  S N LT E+P     L+ L   N +   LS   P             
Sbjct: 89  ---LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE 144

Query: 750 ---SFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLS 792
                 N   ++ +D+  N L+ ++P     L ++       N L 
Sbjct: 145 KLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQLE 186

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 8/81 (9%)

Query: 712 LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQI 771
           +   +N+L  E+P  +  L  L A+   +N L   +P    +L   ES+    N L    
Sbjct: 178 IAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLSL---ESIVAGNNILE--E 229

Query: 772 PLELSELNYLAIFNVSYNDLS 792
             EL  L +L       N L 
Sbjct: 230 LPELQNLPFLTTIYADNNLLK 250

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 5e-05
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 8/83 (9%)

Query: 710 TGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRG 769
             L +S+N+L  ++P  +     L  +++ +N L   +P    +L   E +    N+L  
Sbjct: 134 EYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLPPSL---EFIAAGNNQLE- 186

Query: 770 QIPLELSELNYLAIFNVSYNDLS 792
           ++P EL  L +L       N L 
Sbjct: 187 ELP-ELQNLPFLTAIYADNNSLK 208

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 5e-05
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 10/83 (12%)

Query: 712 LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQI 771
           +D+ +N L  ++P     L+ +      +N L   +P    NL  + ++    N L+ ++
Sbjct: 158 IDVDNNSLK-KLPDLPPSLEFI---AAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KL 210

Query: 772 PLELSELNYLAIFNVSYNDLSGP 794
           P     L  +       N L   
Sbjct: 211 PDLPLSLESI---VAGNNILEEL 230

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 7e-05
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 18/105 (17%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYL-------------QELHALNLSHNHLSGSIPRSFS 752
           ++  T    + +E     P   G               ++ H L L++  LS S+P    
Sbjct: 33  VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPP 91

Query: 753 NLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPN 797
           +L   ES+  S N L  ++P     L  L + N +   LS   P 
Sbjct: 92  HL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL 132

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 712 LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQI 771
           +   +N L       +  L  L  +   +N L  ++P    +L+   ++++  N L   +
Sbjct: 220 IVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLE---ALNVRDNYLT-DL 272

Query: 772 PLELSELNYLAIFNVSYNDLS 792
           P     L +L +    ++ LS
Sbjct: 273 PELPQSLTFLDVSENIFSGLS 293

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  129 bits (326), Expect = 7e-32
 Identities = 70/334 (20%), Positives = 119/334 (35%), Gaps = 44/334 (13%)

Query: 112 TSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGL--IGSLTMQG----EKLELLN 165
           T    L L  N +           +  +LE L+L+ N +  +             L L +
Sbjct: 32  TETRLLDLGKNRIKT--LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89

Query: 166 NKCREMNARICE-LKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVF 224
           N+ + +   +   L NL +L++S NK+   L     +L  L+ L++  N L   +    F
Sbjct: 90  NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAF 148

Query: 225 ANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET---ENFPWLPRFQLKVL 281
           + L SLE L+L   N   S     L++   L VL++  L I      +F  L R  LKVL
Sbjct: 149 SGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR--LKVL 205

Query: 282 NLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLL 341
            +       T+     Y  +L  + ++H NL    P   +++   L FL L  N +    
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS--- 261

Query: 342 HLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSM-GYTVRLL 400
                        I  +             L  L  + +        + P        L 
Sbjct: 262 ------------TIEGSMLHE---------LLRLQEIQLVGGQLA-VVEPYAFRGLNYLR 299

Query: 401 FLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYF 434
            L++S N  +  L +       +L  + +  N  
Sbjct: 300 VLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  127 bits (321), Expect = 3e-31
 Identities = 68/312 (21%), Positives = 118/312 (37%), Gaps = 19/312 (6%)

Query: 180 NLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNN 239
               L+L  N++        ++  +L  L+L  N +S  +    F NL +L  L L  N 
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNR 91

Query: 240 FQGSFSLSVLANHSRLEVLQISR---LQIETENFPWLPRFQLKVLNLRRCNISGTIPSFL 296
            +    L V    S L  L IS    + +    F  L    LK L +   ++        
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY--NLKSLEVGDNDLVYISHRAF 148

Query: 297 QYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGL-LHLPDSKRDLLHLVI 355
                L  + L   NL  + PT  L +   L  L L +  +  +  +       L  L I
Sbjct: 149 SGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207

Query: 356 SNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSM-GYTVRLLFLDLSSNNFSGELP 414
           S+  ++  +  N  +    L  L ++  +   ++P     + V L FL+LS N  S  + 
Sbjct: 208 SHWPYLDTMTPNC-LYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIE 264

Query: 415 KQFLTGCVSLAFMNVSHNYFGGQIFPKYM--SMTQLAWLYLNDNQFTGRLEEGLLNA-PS 471
              L   + L  + +        +   Y    +  L  L ++ NQ T  LEE + ++  +
Sbjct: 265 GSMLHELLRLQEIQLVGGQL--AVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGN 321

Query: 472 LHILDVSNNMLS 483
           L  L + +N L+
Sbjct: 322 LETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  113 bits (285), Expect = 1e-26
 Identities = 72/424 (16%), Positives = 135/424 (31%), Gaps = 108/424 (25%)

Query: 183 ELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQG 242
            +     +   ++P+ +   T  R+LDL  N++   L    FA+   LE L L+ N    
Sbjct: 15  AVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNEN---- 66

Query: 243 SFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDL 302
                            +S   +E   F  L    L+ L LR   +            +L
Sbjct: 67  ----------------IVS--AVEPGAFNNLF--NLRTLGLRSNRLKLIPLGVFTGLSNL 106

Query: 303 RYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIG 362
             +D+S N +      ++ Q+   L+ L + +N L                 IS+  F G
Sbjct: 107 TKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV---------------YISHRAFSG 150

Query: 363 MLPDNFGMILPELVYLDMSQNSFEGSIPP-SMGYTVRLLFLDLSSNNFSGELPKQFLTGC 421
                    L  L  L + + +   SIP  ++ +   L+ L L   N +           
Sbjct: 151 ---------LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN----------- 189

Query: 422 VSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNM 481
                  +    F          + +L  L ++   +   +    L   +L  L +++  
Sbjct: 190 ------AIRDYSFKR--------LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235

Query: 482 LSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHS 541
           L+                     ++       L  L   R L++S N +        +  
Sbjct: 236 LT---------------------AVPYLAVRHLVYL---RFLNLSYNPISTIEGSMLHEL 271

Query: 542 SSLWHLFLHNNSLNGSIPSALFQS-SQLMTLDLRDNEFSGNIPPLINED-SNLRALLLRG 599
             L  + L    L   +    F+  + L  L++  N+ +  +   +     NL  L+L  
Sbjct: 272 LRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDS 329

Query: 600 NNLQ 603
           N L 
Sbjct: 330 NPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  103 bits (258), Expect = 3e-23
 Identities = 61/338 (18%), Positives = 107/338 (31%), Gaps = 29/338 (8%)

Query: 301 DLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGL-----LHLPDSKRDLLHLVI 355
             R +           P  +         L L  N +K L        P     L  L +
Sbjct: 12  QDRAVLCHRKRFV-AVPEGIPTE---TRLLDLGKNRIKTLNQDEFASFPH----LEELEL 63

Query: 356 SNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSM-GYTVRLLFLDLSSNNFSGELP 414
           + N  +  +       L  L  L +  N  +  IP  +      L  LD+S N     L 
Sbjct: 64  NENI-VSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILL 120

Query: 415 KQFLTGCVSLAFMNVSHN---YFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPS 471
                   +L  + V  N   Y   + F     +  L  L L     T    E L +   
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLVYISHRAF---SGLNSLEQLTLEKCNLTSIPTEALSHLHG 177

Query: 472 LHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLY 531
           L +L + +  ++    +       L VL +S       ++           L I+   L 
Sbjct: 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237

Query: 532 GPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS-SQLMTLDLRDNEFSGNIPPLINED- 589
                +  H   L  L L  N ++ +I  ++     +L  + L   + +  + P      
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGL 295

Query: 590 SNLRALLLRGNNLQGNIPQQLCH-LRKIAIVDISYNLL 626
           + LR L + GN L   + + + H +  +  + +  N L
Sbjct: 296 NYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 99.8 bits (249), Expect = 4e-22
 Identities = 54/234 (23%), Positives = 83/234 (35%), Gaps = 34/234 (14%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDL 145
            L  LK L +G N          + L SL  L LE  NL     P + L +L  L VL L
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS--IPTEALSHLHGLIVLRL 183

Query: 146 SGNGL--IGSLTMQG-EKLELL----NNKCREMNARICELKNLVELNLSWNKLDGSLPQC 198
               +  I   + +   +L++L          M        NL  L+++   L       
Sbjct: 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA 243

Query: 199 LSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVL 258
           + +L YLR L+L+ N +S  +  S+   L  L+ + L G                     
Sbjct: 244 VRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA----------------- 285

Query: 259 QISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNL 312
                 +E   F  L    L+VLN+    ++    S      +L  + L  N L
Sbjct: 286 -----VVEPYAFRGLNY--LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 96.3 bits (240), Expect = 6e-21
 Identities = 55/289 (19%), Positives = 100/289 (34%), Gaps = 40/289 (13%)

Query: 354 VISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGEL 413
           V+ +      +P+    I  E   LD+ +N  +            L  L+L+ N  S   
Sbjct: 16  VLCHRKRFVAVPEG---IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS--- 69

Query: 414 PKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLL-NAPSL 472
                          V    F          +  L  L L  N+    +  G+     +L
Sbjct: 70  --------------AVEPGAFNN--------LFNLRTLGLRSNRLK-LIPLGVFTGLSNL 106

Query: 473 HILDVSNNMLSGQLPHWVGNFSNLDVLLMSRN---SLEGDVSVPLSNLQVARILDISENK 529
             LD+S N +   L +   +  NL  L +  N    +       L++L+    L + +  
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ---LTLEKCN 163

Query: 530 LYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS-SQLMTLDLRDNEFSGNIPPLINE 588
           L      + +H   L  L L + ++N +I    F+   +L  L++    +   + P    
Sbjct: 164 LTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 589 DSNLRALLLRGNNLQGNIPQQLC-HLRKIAIVDISYNLLDGSIPSCFTN 636
             NL +L +   NL   +P     HL  +  +++SYN +     S    
Sbjct: 223 GLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 90.5 bits (225), Expect = 4e-19
 Identities = 65/329 (19%), Positives = 116/329 (35%), Gaps = 57/329 (17%)

Query: 470 PSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRN---SLEGDVSVPLSNLQVARILDIS 526
               +LD+  N +         +F +L+ L ++ N   ++E      L NL+    L + 
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRT---LGLR 88

Query: 527 ENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS-SQLMTLDLRDNEFSGNIPP- 584
            N+L       F   S+L  L +  N +   +   +FQ    L +L++ DN+    I   
Sbjct: 89  SNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YISHR 146

Query: 585 LINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEG 644
             +  ++L  L L   NL     + L HL  + ++ + +  ++ +I              
Sbjct: 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDY----------- 194

Query: 645 DPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGG 704
                           F  +       ++          L           N        
Sbjct: 195 ---------------SFKRLYRLKVLEIS------HWPYLDTMTPNCLYGLN-------- 225

Query: 705 VLEYMTGLDLSSNELTGEIPS-AIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLS 763
               +T L ++   LT  +P  A+ +L  L  LNLS+N +S         L  ++ + L 
Sbjct: 226 ----LTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280

Query: 764 YNKLRGQIPLELSELNYLAIFNVSYNDLS 792
             +L    P     LNYL + NVS N L+
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 7e-06
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 704 GVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLS 763
           G+      LDL  N +             L  L L+ N +S   P +F+NL  + ++ L 
Sbjct: 29  GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88

Query: 764 YNKLRGQIPLE-LSELNYLAIFNVSYNDLS 792
            N+L+  IPL   + L+ L   ++S N + 
Sbjct: 89  SNRLK-LIPLGVFTGLSNLTKLDISENKIV 117

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  124 bits (312), Expect = 1e-30
 Identities = 73/445 (16%), Positives = 146/445 (32%), Gaps = 89/445 (20%)

Query: 82  NNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLE 141
           +N         ++I   +          +L +   +  + + +     P  +L + R +E
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK--LPAALLDSFRQVE 72

Query: 142 VLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSN 201
           +L+L+             ++E ++               + +L + +N +    P    N
Sbjct: 73  LLNLNDL-----------QIEEIDTYA------FAYAHTIQKLYMGFNAIRYLPPHVFQN 115

Query: 202 LTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQIS 261
           +  L VL L  N LS +LP  +F N   L  LS+S N                     + 
Sbjct: 116 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNN--------------------NLE 154

Query: 262 RLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLL 321
           R++ +T  F       L+ L L    ++    S +     L + ++S+N L+       L
Sbjct: 155 RIEDDT--FQATT--SLQNLQLSSNRLTHVDLSLIP---SLFHANVSYNLLS------TL 201

Query: 322 QNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMS 381
                +E L                          ++N I ++      +  EL  L + 
Sbjct: 202 AIPIAVEELDA------------------------SHNSINVVRGP---VNVELTILKLQ 234

Query: 382 QNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPK 441
            N+   +    +     L+ +DLS N    ++          L  + +S+N     +   
Sbjct: 235 HNNL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL-VALNLY 290

Query: 442 YMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLM 501
              +  L  L L+ N     +E        L  L + +N +   L   +     L  L +
Sbjct: 291 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTL 346

Query: 502 SRNSLEGD-VSVPLSNLQVARILDI 525
           S N  + + +     N+    + D 
Sbjct: 347 SHNDWDCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  121 bits (306), Expect = 8e-30
 Identities = 75/372 (20%), Positives = 141/372 (37%), Gaps = 33/372 (8%)

Query: 165 NNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVF 224
             + + +++ +       ++++     D         L   +++   ++ +   LP ++ 
Sbjct: 7   QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALL 65

Query: 225 ANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET---ENFPWLPRFQLKVL 281
            +   +E L+L+    +        A    ++ L +    I       F  +P   L VL
Sbjct: 66  DSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP--LLTVL 122

Query: 282 NLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLL 341
            L R ++S            L  + +S+NNL         Q  T L+ L L +N L    
Sbjct: 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT--- 178

Query: 342 HLPDSK-RDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLL 400
           H+  S    L H  +S N  +  L          +  LD S NS    +   +   V L 
Sbjct: 179 HVDLSLIPSLFHANVSYNL-LSTLAI-----PIAVEELDASHNSIN-VVRGPV--NVELT 229

Query: 401 FLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYM--SMTQLAWLYLNDNQF 458
            L L  NN + +    +L     L  +++S+N    +    +    M +L  LY+++N+ 
Sbjct: 230 ILKLQHNNLT-DTA--WLLNYPGLVEVDLSYNEL--EKIMYHPFVKMQRLERLYISNNRL 284

Query: 459 TGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQ 518
              L       P+L +LD+S+N L   +      F  L+ L +  NS+    ++ LS   
Sbjct: 285 V-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLSTHH 339

Query: 519 VARILDISENKL 530
             + L +S N  
Sbjct: 340 TLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  120 bits (304), Expect = 2e-29
 Identities = 75/409 (18%), Positives = 140/409 (34%), Gaps = 77/409 (18%)

Query: 178 LKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSG 237
           L N   +    + +       L +   + +L+L   Q+   +    FA   +++ L +  
Sbjct: 44  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGF 102

Query: 238 NNFQGSFSLSVLANHSRLEVLQISRLQIET---ENFPWLPRFQLKVLNLRRCNISGTIPS 294
           N  +      V  N   L VL + R  + +     F   P+  L  L++   N+      
Sbjct: 103 NAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK--LTTLSMSNNNLERIEDD 159

Query: 295 FLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLV 354
             Q    L+ + LS N L       L+ +   L    +  N L  L         +  L 
Sbjct: 160 TFQATTSLQNLQLSSNRLT-HVDLSLIPS---LFHANVSYNLLSTLAIPIA----VEELD 211

Query: 355 ISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELP 414
            S+N+ I ++      +  EL  L +  N+   +    +     L+ +DLS N       
Sbjct: 212 ASHNS-INVVRGP---VNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE---- 261

Query: 415 KQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHI 474
                         + ++ F          M +L  LY+++N+    L       P+L +
Sbjct: 262 -------------KIMYHPFVK--------MQRLERLYISNNRLV-ALNLYGQPIPTLKV 299

Query: 475 LDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPL 534
           LD+S+N L   +      F  L+ L +  NS+    ++ LS                   
Sbjct: 300 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLSTH----------------- 338

Query: 535 EFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIP 583
                   +L +L L +N  + +   ALF+   +    + D +    I 
Sbjct: 339 -------HTLKNLTLSHNDWDCNSLRALFR--NVARPAVDDADQHCKID 378

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  117 bits (294), Expect = 3e-28
 Identities = 74/354 (20%), Positives = 127/354 (35%), Gaps = 25/354 (7%)

Query: 255 LEVLQISRLQIE-TENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLA 313
              + I     +    F  +     K++  +   +     + L     +  ++L+   + 
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82

Query: 314 GTFPTWLLQNNTKLEFLFLFNNFLKGL-LHLPDSKRDLLHLVISNNNFIGMLPDNFGMIL 372
               T+       ++ L++  N ++ L  H+  +   L  LV+  N+ +  LP       
Sbjct: 83  -EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNT 140

Query: 373 PELVYLDMSQNSFEGSIPPSM-GYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSH 431
           P+L  L MS N+ E  I       T  L  L LSSN  +  +    +    SL   NVS+
Sbjct: 141 PKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIP---SLFHANVSY 195

Query: 432 NYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVG 491
           N               +  L  + N     +   +     L IL + +N L+     W+ 
Sbjct: 196 NLL--STLAI---PIAVEELDASHNSIN-VVRGPVN--VELTILKLQHNNLTD--TAWLL 245

Query: 492 NFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHN 551
           N+  L  + +S N LE  +  P   +Q    L IS N+L   L        +L  L L +
Sbjct: 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH 304

Query: 552 NSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGN 605
           N L   +     Q  +L  L L  N     +    +    L+ L L  N+   N
Sbjct: 305 NHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTH--HTLKNLTLSHNDWDCN 354

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 98.2 bits (245), Expect = 5e-22
 Identities = 63/330 (19%), Positives = 114/330 (34%), Gaps = 51/330 (15%)

Query: 302 LRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFI 361
            + +   ++ +    P  LL +  ++E L L +  ++                I    F 
Sbjct: 47  QKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE---------------EIDTYAFA 90

Query: 362 GMLPDNFGMILPELVYLDMSQNSFEGSIPPSM-GYTVRLLFLDLSSNNFSGELPKQFLTG 420
                        +  L M  N+    +PP +      L  L L  N+ S  LP+     
Sbjct: 91  Y---------AHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHN 139

Query: 421 CVSLAFMNVSHN---YFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDV 477
              L  +++S+N         F    + T L  L L+ N+ T  ++  L+  PSL   +V
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTF---QATTSLQNLQLSSNRLT-HVDLSLI--PSLFHANV 193

Query: 478 SNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFS 537
           S N+LS      +     ++ L  S NS+     V         IL +  N L       
Sbjct: 194 SYNLLST-----LAIPIAVEELDASHNSIN---VVRGPVNVELTILKLQHNNLTDT--AW 243

Query: 538 FNHSSSLWHLFLHNNSLNGSIPSALFQS-SQLMTLDLRDNEFSGNIPPLINEDSNLRALL 596
             +   L  + L  N L   I    F    +L  L + +N     +         L+ L 
Sbjct: 244 LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLD 301

Query: 597 LRGNNLQGNIPQQLCHLRKIAIVDISYNLL 626
           L  N+L  ++ +      ++  + + +N +
Sbjct: 302 LSHNHLL-HVERNQPQFDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 88.6 bits (220), Expect = 7e-19
 Identities = 69/402 (17%), Positives = 132/402 (32%), Gaps = 56/402 (13%)

Query: 424 LAFMNVSHNYFGGQIF--PKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNM 481
             F +V  +     ++   + +++     +   ++         L +   + +L++++  
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 80

Query: 482 LSGQLPHWVGNFSNLDVLLMSRN---SLEGDVSVPLSNLQVARILDISENKLYGPLEFSF 538
           +     +       +  L M  N    L   V   +  L V   L +  N L       F
Sbjct: 81  IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV---LVLERNDLSSLPRGIF 137

Query: 539 NHSSSLWHLFLHNNSLNGSIPSALFQS-SQLMTLDLRDNEFSGNIPPLINEDSNLRALLL 597
           +++  L  L + NN+L   I    FQ+ + L  L L  N  + ++   +    +L    +
Sbjct: 138 HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI--PSLFHANV 193

Query: 598 RGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLV 657
             N L       L     +  +D S+N ++         +                  L 
Sbjct: 194 SYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVEL----------------TILK 232

Query: 658 VEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGL---DL 714
           ++H            N +            VEV  ++ N  E         M  L    +
Sbjct: 233 LQH------------NNLTDTAWLLNYPGLVEV-DLSYNELEKIMYHPFVKMQRLERLYI 279

Query: 715 SSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLE 774
           S+N L   +      +  L  L+LSHNHL   + R+      +E++ L +N +     L+
Sbjct: 280 SNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLK 334

Query: 775 LSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLC 816
           LS  + L    +S+ND          F N            C
Sbjct: 335 LSTHHTLKNLTLSHNDWD-CNSLRALFRNVARPAVDDADQHC 375

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 76.6 bits (189), Expect = 7e-15
 Identities = 45/183 (24%), Positives = 70/183 (38%), Gaps = 18/183 (9%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDL 145
               ++ L+   NS +   V        LT L L+ NNL         L N   L  +DL
Sbjct: 203 IPIAVEELDASHNSINV--VRGPV-NVELTILKLQHNNL----TDTAWLLNYPGLVEVDL 255

Query: 146 SGNGL--IGSLTMQG----EKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCL 199
           S N L  I           E+L + NN+   +N     +  L  L+LS N L   + +  
Sbjct: 256 SYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQ 314

Query: 200 SNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQ 259
                L  L L  N +   L +S    L +L   +LS N++  +   ++  N +R  V  
Sbjct: 315 PQFDRLENLYLDHNSIV-TLKLSTHHTLKNL---TLSHNDWDCNSLRALFRNVARPAVDD 370

Query: 260 ISR 262
             +
Sbjct: 371 ADQ 373

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  123 bits (310), Expect = 6e-30
 Identities = 83/432 (19%), Positives = 152/432 (35%), Gaps = 62/432 (14%)

Query: 180 NLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNN 239
           ++  ++LS N +        S L  L+ L +        +  + F  L+SL  L L  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 240 FQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNI-SGTIPS-FLQ 297
           F                       Q+ET  F  L    L+VL L +CN+    +   F +
Sbjct: 91  FL----------------------QLETGAFNGLA--NLEVLTLTQCNLDGAVLSGNFFK 126

Query: 298 YQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISN 357
               L  + L  NN+    P     N  +   L L  N +K                I  
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK---------------SICE 171

Query: 358 NNFIGMLPDNFGMI-LPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQ 416
            + +     +F ++ L  +   DM++         +      +  LDLS N F   + K+
Sbjct: 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231

Query: 417 FLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILD 476
           F          ++  +           S     +   ++  F G      L A  +   D
Sbjct: 232 FFDAIAGTKIQSLILSNSYNMG----SSFGHTNFKDPDNFTFKG------LEASGVKTCD 281

Query: 477 VSNNMLSGQLPHWVGNFSNLDVLLMSRN---SLEGDVSVPLSNLQVARILDISENKLYGP 533
           +S + +   L     +F++L+ L +++N    ++ +    L++L     L++S+N L   
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK---LNLSQNFLGSI 338

Query: 534 LEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS-SQLMTLDLRDNEFSGNIPPLINED-SN 591
               F +   L  L L  N +  ++    F     L  L L  N+   ++P  I +  ++
Sbjct: 339 DSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTS 396

Query: 592 LRALLLRGNNLQ 603
           L+ + L  N   
Sbjct: 397 LQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  114 bits (287), Expect = 5e-27
 Identities = 81/417 (19%), Positives = 138/417 (33%), Gaps = 64/417 (15%)

Query: 90  LKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNG 149
           +  +++  NS +E      + L  L  L +E    G+          L +L +L L  N 
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVI-RNNTFRGLSSLIILKLDYN- 89

Query: 150 LIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSL--PQCLSNLTYLRV 207
                     +   L             L NL  L L+   LDG++        LT L +
Sbjct: 90  ----------QFLQLETGA------FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133

Query: 208 LDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET 267
           L L  N +    P S F N+     L L+ N  + S     L N                
Sbjct: 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFT--------- 183

Query: 268 ENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWL--LQNNT 325
                L    + + ++    +             +  +DLS N    +           T
Sbjct: 184 ----LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239

Query: 326 KLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNF-GMILPELVYLDMSQNS 384
           K++ L L N++  G                 + NF       F G+    +   D+S++ 
Sbjct: 240 KIQSLILSNSYNMG-------------SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286

Query: 385 FEGSIPPSM-GYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFG---GQIFP 440
              ++  S+  +   L  L L+ N  + ++      G   L  +N+S N+ G    ++F 
Sbjct: 287 IF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE 344

Query: 441 KYMSMTQLAWLYLNDNQFTGRLEEGLL-NAPSLHILDVSNNMLSGQLPHWVGNFSNL 496
               + +L  L L+ N     L +      P+L  L +  N L   +P   G F  L
Sbjct: 345 N---LDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKS-VPD--GIFDRL 394

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  103 bits (259), Expect = 2e-23
 Identities = 76/353 (21%), Positives = 122/353 (34%), Gaps = 51/353 (14%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDL 145
            L  L IL + +N F +        L +L  L L   NL            L +LE+L L
Sbjct: 77  GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136

Query: 146 SGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLT-- 203
             N  I  +           N           ++    L+L++NK+     + L N    
Sbjct: 137 RDNN-IKKIQPAS----FFLN-----------MRRFHVLDLTFNKVKSICEEDLLNFQGK 180

Query: 204 YLRVLDLTSNQLS-------GNLPISVFANLTSLEYLSLSGNNFQGS--FSLSVLANHSR 254
           +  +L L+S  L        G          TS+  L LSGN F+ S           ++
Sbjct: 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240

Query: 255 LEVLQISRLQIETEN-------------FPWLPRFQLKVLNLRRCNISGTIPSFLQYQYD 301
           ++ L +S       +             F  L    +K  +L +  I   + S   +  D
Sbjct: 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD 300

Query: 302 LRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLP----DSKRDLLHLVISN 357
           L  + L+ N +            T L  L L  NFL     +     ++   L  L +S 
Sbjct: 301 LEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG---SIDSRMFENLDKLEVLDLSY 356

Query: 358 NNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSM-GYTVRLLFLDLSSNNF 409
           N+ I  L D   + LP L  L +  N  + S+P  +      L  + L +N +
Sbjct: 357 NH-IRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 82.9 bits (205), Expect = 1e-16
 Identities = 80/359 (22%), Positives = 131/359 (36%), Gaps = 45/359 (12%)

Query: 451 LYLNDNQFTGRLEEGLL-NAPSLHILDVSNNMLSGQLPHWV-GNFSNLDVLLMSRN---S 505
           + L+ N     L E        L  L V        + +      S+L +L +  N    
Sbjct: 35  VDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93

Query: 506 LEGDVSVPLSNLQVARILDISENKLYGPL--EFSFNHSSSLWHLFLHNNSLNGSIPSALF 563
           LE      L+NL+V   L +++  L G +     F   +SL  L L +N++    P++ F
Sbjct: 94  LETGAFNGLANLEV---LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 564 QS-SQLMTLDLRDNEFSGNIPPLI---NEDSNLRALLLRGNNLQGNIPQQLC-------- 611
            +  +   LDL  N+   +I        +  +   L L    LQ      L         
Sbjct: 151 LNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 612 HLRKIAIVDISYNLLDGSIPSCFTNIWP--WMEEGDPFNGFVFGYTLVVEHFPAISAYYN 669
               I  +D+S N    S+   F +      ++     N +  G +    +F        
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD---- 265

Query: 670 STLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTG---LDLSSNELTGEIPSA 726
              N  F G +   ++       ++K++  +    V  + T    L L+ NE+     +A
Sbjct: 266 ---NFTFKGLEASGVKTC----DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA 318

Query: 727 IGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLE----LSELNYL 781
              L  L  LNLS N L     R F NL  +E +DLSYN +R  +  +    L  L  L
Sbjct: 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKEL 376

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  119 bits (301), Expect = 1e-29
 Identities = 57/301 (18%), Positives = 105/301 (34%), Gaps = 19/301 (6%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDL 145
           S   +K L++  N  S+     L   T L  L L  N L         L +L  L  LDL
Sbjct: 32  SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL----YETLDLESLSTLRTLDL 87

Query: 146 SGNGL--IGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLT 203
           + N +  +       E L   NN    ++      +    + L+ NK+           +
Sbjct: 88  NNNYVQELLVGP-SIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRS 144

Query: 204 YLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRL 263
            ++ LDL  N++       + A+  +LE+L+L  N       +      ++L+ L +S  
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSN 201

Query: 264 QIET--ENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLL 321
           ++      F       +  ++LR   +   I   L++  +L + DL  N           
Sbjct: 202 KLAFMGPEFQSAAG--VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 322 QNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMS 381
             N +++   +    +K L    + +  +  L          LP  F   L  L +    
Sbjct: 259 SKNQRVQ--TVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

Query: 382 Q 382
            
Sbjct: 317 H 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  118 bits (298), Expect = 2e-29
 Identities = 54/288 (18%), Positives = 101/288 (35%), Gaps = 32/288 (11%)

Query: 133 VLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLD 192
           +  N    ++  ++ + L  +L    +                    N+ EL+LS N L 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSA-----------------WNVKELDLSGNPLS 47

Query: 193 GSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANH 252
                 L+  T L +L+L+SN L          +L++L  L L+ N       +  L   
Sbjct: 48  QISAADLAPFTKLELLNLSSNVLYE---TLDLESLSTLRTLDLNNNY------VQELLVG 98

Query: 253 SRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNL 312
             +E L  +   I   +         K + L    I+         +  ++Y+DL  N +
Sbjct: 99  PSIETLHAANNNISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

Query: 313 AGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMIL 372
                  L  ++  LE L L  NF+  +         L  L +S+N  +  +   F    
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNK-LAFMGPEFQS-A 213

Query: 373 PELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTG 420
             + ++ +  N     I  ++ ++  L   DL  N F     + F + 
Sbjct: 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  113 bits (286), Expect = 9e-28
 Identities = 57/386 (14%), Positives = 122/386 (31%), Gaps = 70/386 (18%)

Query: 194 SLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHS 253
           ++ +   N    ++  +T + L      S+  +  +++ L LSGN               
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLS------------ 47

Query: 254 RLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLA 313
                     QI   +     +                          L  ++LS N L 
Sbjct: 48  ----------QISAADLAPFTK--------------------------LELLNLSSNVLY 71

Query: 314 GTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILP 373
            T     L++ + L  L L NN+++ LL  P     +  L  +NNN I  +  +      
Sbjct: 72  ETLD---LESLSTLRTLDLNNNYVQELLVGP----SIETLHAANNN-ISRVSCS---RGQ 120

Query: 374 ELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNY 433
               + ++ N          G   R+ +LDL  N        +      +L  +N+ +N+
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 434 FGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNF 493
                    +   +L  L L+ N+    +     +A  +  + + NN L   +   +   
Sbjct: 181 I--YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236

Query: 494 SNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNS 553
            NL+   +  N      ++     +  R+  +++  +   L        ++  L  +   
Sbjct: 237 QNLEHFDLRGNGFHCG-TLRDFFSKNQRVQTVAKQTVKK-LTGQNEEECTVPTLGHYGAY 294

Query: 554 LNGSIPSALFQSSQLMTLDLRDNEFS 579
               +P+          + L  +   
Sbjct: 295 CCEDLPAPFADR----LIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 99.7 bits (249), Expect = 5e-23
 Identities = 64/340 (18%), Positives = 115/340 (33%), Gaps = 68/340 (20%)

Query: 277 QLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNF 336
           + K+  +   ++   + S  Q  ++++ +DLS N L+       L   TKLE L L +N 
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNV 69

Query: 337 LKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYT 396
           L   L L                            L  L  LD++ N  +  +       
Sbjct: 70  LYETLDLES--------------------------LSTLRTLDLNNNYVQ-ELLVG---- 98

Query: 397 VRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDN 456
             +  L  ++NN S  +      G                              +YL +N
Sbjct: 99  PSIETLHAANNNIS-RVSCSRGQG---------------------------KKNIYLANN 130

Query: 457 QFTGRLEEGLLNAPSLHILDVSNNMLSG-QLPHWVGNFSNLDVLLMSRNSLEG-DVSVPL 514
           + T   +        +  LD+  N +          +   L+ L +  N +      V  
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF 190

Query: 515 SNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLR 574
           + L+    LD+S NKL   +   F  ++ +  + L NN L   I  AL  S  L   DLR
Sbjct: 191 AKLKT---LDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245

Query: 575 DNEFS-GNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHL 613
            N F  G +    +++  ++ +  +         ++ C +
Sbjct: 246 GNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 47/210 (22%), Positives = 85/210 (40%), Gaps = 22/210 (10%)

Query: 444 SMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSR 503
           +  +     + D+     L     +A ++  LD+S N LS      +  F+ L++L +S 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 504 NSLEGDVSVPLSNLQVARILDISENKL----YGP----LEFSFNH--------SSSLWHL 547
           N L    ++ L +L   R LD++ N +     GP    L  + N+             ++
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNI 125

Query: 548 FLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSG-NIPPLINEDSNLRALLLRGNNLQGNI 606
           +L NN +           S++  LDL+ NE    N   L      L  L L+ N +  ++
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DV 184

Query: 607 PQQLCHLRKIAIVDISYNLLDGSIPSCFTN 636
             Q+    K+  +D+S N L   +   F +
Sbjct: 185 KGQVV-FAKLKTLDLSSNKLA-FMGPEFQS 212

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 67.3 bits (165), Expect = 4e-12
 Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 16/168 (9%)

Query: 462 LEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRN---SLEGDVSVPLSNLQ 518
           + E   N     I  V+++ L   L     +  N+  L +S N    +      P + L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 519 VARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEF 578
           +   L++S N LY  L+      S+L  L L+NN +       L     + TL   +N  
Sbjct: 62  L---LNLSSNVLYETLDLE--SLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI 111

Query: 579 SGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLL 626
           S  +          + + L  N +            ++  +D+  N +
Sbjct: 112 S-RVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 36/237 (15%), Positives = 76/237 (32%), Gaps = 34/237 (14%)

Query: 557 SIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKI 616
           +I       ++     + D+     +  L     N++ L L GN L       L    K+
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 617 AIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIF 676
            ++++S N+L                            TL + +        N  +  + 
Sbjct: 61  ELLNLSSNVLY-ETL--------------DLESLSTLRTLDLNN--------NY-VQELL 96

Query: 677 SGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHAL 736
            G     L         A N          +    + L++N++T       G    +  L
Sbjct: 97  VGPSIETLH-------AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 737 NLSHNHLSG-SIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLS 792
           +L  N +   +     ++   +E ++L YN +   +  ++     L   ++S N L+
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 3/113 (2%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765
              +  LDLSSN+L   +         +  ++L +N L   I ++    + +E  DL  N
Sbjct: 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

Query: 766 KLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGP 818
                  L         +  V+   +   T   ++        + G       
Sbjct: 248 GFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 13/74 (17%), Positives = 26/74 (35%)

Query: 723 IPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLA 782
           I              ++ + L  ++     +   ++ +DLS N L      +L+    L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 783 IFNVSYNDLSGPTP 796
           + N+S N L     
Sbjct: 62  LLNLSSNVLYETLD 75

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 10/87 (11%)

Query: 712 LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQI 771
           L+LSSN L       +  L  L  L+L++N++             IE++  + N +    
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR-- 113

Query: 772 PLELSELNYLAIFNVSYNDLSGPTPNT 798
            +  S         ++ N ++      
Sbjct: 114 -VSCSRGQGKKNIYLANNKITMLRDLD 139

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  121 bits (305), Expect = 5e-29
 Identities = 93/495 (18%), Positives = 168/495 (33%), Gaps = 63/495 (12%)

Query: 112 TSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREM 171
              T L +  N +         + +L  L +L +S N +                  + +
Sbjct: 21  QKTTILNISQNYISEL--WTSDILSLSKLRILIISHNRI------------------QYL 60

Query: 172 NARICE-LKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSL 230
           +  + +  + L  L+LS NKL   +         L+ LDL+ N          F N++ L
Sbjct: 61  DISVFKFNQELEYLDLSHNKL-VKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQL 117

Query: 231 EYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISG 290
           ++L LS  + + S  L +   +    +L +     E E+   L  F  + L++     + 
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF--PTN 175

Query: 291 TIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGL----LHLPD- 345
               F+         +L  +N+              +      N  L  L    +     
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 346 ---------SKRDLLHLVISNNNFIGML----PDNFGMILPELVYLDMSQNSFEGSIPPS 392
                        + +  ISN    G L     D  G  L  L    +  + F    P S
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQS 293

Query: 393 MGYT--VRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAW 450
             Y     +   + + +  +  +     +       ++ S+N     +F     +T+L  
Sbjct: 294 YIYEIFSNMNIKNFTVSG-TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352

Query: 451 LYLNDNQFT--GRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFS---NLDVLLMSRNS 505
           L L  NQ     ++ E      SL  LD+S N +S       G+ S   +L  L MS N 
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK--GDCSWTKSLLSLNMSSNI 410

Query: 506 LEGDV-SVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQ 564
           L   +       ++V   LD+  NK+   +        +L  L + +N L  S+P  +F 
Sbjct: 411 LTDTIFRCLPPRIKV---LDLHSNKIKS-IPKQVVKLEALQELNVASNQLK-SVPDGIFD 465

Query: 565 S-SQLMTLDLRDNEF 578
             + L  + L  N +
Sbjct: 466 RLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  116 bits (293), Expect = 2e-27
 Identities = 101/497 (20%), Positives = 183/497 (36%), Gaps = 69/497 (13%)

Query: 90  LKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNG 149
             ILNI  N  SE     + SL+ L  L +  N +   +  + V    + LE LDLS N 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQ--YLDISVFKFNQELEYLDLSHNK 80

Query: 150 LIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQC--LSNLTYLRV 207
           L   ++                        NL  L+LS+N  D +LP C    N++ L+ 
Sbjct: 81  L-VKISCHP-------------------TVNLKHLDLSFNAFD-ALPICKEFGNMSQLKF 119

Query: 208 LDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET 267
           L L++  L     +   A+L   + L + G  +        L +        +  +    
Sbjct: 120 LGLSTTHLE-KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD---FNTESLHIVFPTN 175

Query: 268 ENFPWLPRFQLK------------VLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGT 315
           + F ++    +K            VL   +C+   +I + LQ    L  + L++      
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 316 FPTWLLQ--NNTKLEFLFLFNNFLKGLLHLPD---SKRDLLHLVISN--NNFIGMLPDNF 368
               +LQ   +T + +  + N  L+G L   D   S   L  L I    ++  G      
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295

Query: 369 GMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMN 428
             I   +   + + +                L LD S+N  + +   +       L  + 
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLI 354

Query: 429 VSHNYFGGQIFPKYMS----MTQLAWLYLNDNQFTGRLEEGLLNAP-SLHILDVSNNMLS 483
           +  N    +   K       M  L  L ++ N  +   ++G  +   SL  L++S+N+L+
Sbjct: 355 LQMNQL--KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412

Query: 484 GQLPHWVGNFSNLDVLLMSRNSLEGDVSVP-----LSNLQVARILDISENKLYGPLEFSF 538
             +         + VL +  N ++   S+P     L  LQ    L+++ N+L    +  F
Sbjct: 413 DTIFR--CLPPRIKVLDLHSNKIK---SIPKQVVKLEALQE---LNVASNQLKSVPDGIF 464

Query: 539 NHSSSLWHLFLHNNSLN 555
           +  +SL  ++LH N  +
Sbjct: 465 DRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  116 bits (292), Expect = 2e-27
 Identities = 84/462 (18%), Positives = 168/462 (36%), Gaps = 29/462 (6%)

Query: 184 LNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGS 243
           ++ S N L   +P+ LS      +L+++ N +S  L  S   +L+ L  L +S N  Q  
Sbjct: 5   VDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ-Y 59

Query: 244 FSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNI-SGTIPSFLQYQYDL 302
             +SV   +  LE L +S  ++   +        LK L+L      +  I         L
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLVKISCHPTV--NLKHLDLSFNAFDALPICKEFGNMSQL 117

Query: 303 RYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLK--GLLHLPDSKRDLLHLVISNNNF 360
           +++ LS  +L  +    +   N     L L   + +      L D   + LH+V   N  
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177

Query: 361 IGMLPDNFGMILPELVYLDMSQNSFEG------SIPPSMGYTVRLLFLDLSSNNFSGELP 414
              + D     +  L   ++     +       SI   +    +L  L L++   +    
Sbjct: 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237

Query: 415 KQFLT--GCVSLAFMNVSHNYFGGQIFPKYM-----SMTQLAWLYLNDNQFTGRLEEGLL 467
            + L      ++ + ++S+    GQ+  +       S+  L+   +  + F         
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297

Query: 468 NAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISE 527
              +++I + + +             S    L  S N L   V     +L     L +  
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357

Query: 528 NKL--YGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS-SQLMTLDLRDNEFSGNIPP 584
           N+L     +        SL  L +  NS++             L++L++  N  +  I  
Sbjct: 358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR 417

Query: 585 LINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLL 626
            +     ++ L L  N ++ +IP+Q+  L  +  ++++ N L
Sbjct: 418 CL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL 456

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 98.4 bits (245), Expect = 2e-21
 Identities = 80/423 (18%), Positives = 136/423 (32%), Gaps = 58/423 (13%)

Query: 85  GSLKQLKILNIGFNSFSE-SLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVL 143
                LK L++ FN+F    +     +++ L  L L   +L      +  + +L   +VL
Sbjct: 87  HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS--SVLPIAHLNISKVL 144

Query: 144 DLSGN--------GLIGSLTMQGEKLELLNNKCREMNARIC--ELKNLVELNLSWNKLDG 193
            + G           +     +   +    NK       +    + NL   N+     D 
Sbjct: 145 LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN 204

Query: 194 SLPQCLSNLT------YLRVLDLTSNQLSGNLPISVFANL--TSLEYLSLSGNNFQGSFS 245
                LS L        L  L L + + + N  I +   +  T++ Y S+S    QG   
Sbjct: 205 KCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLD 264

Query: 246 LSVLA-NHSRLEVLQISRLQIETENFPWLPRF----QLKVLNLRRCNISGTIPSFLQYQY 300
                 + + L+ L I ++  +   FP    +     + + N                  
Sbjct: 265 FRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS 324

Query: 301 DLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLP---DSKRDLLHLVISN 357
              ++D S+N L          + T+LE L L  N LK L  +       + L  L IS 
Sbjct: 325 PFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383

Query: 358 NNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQF 417
           N+               L+ L+MS N    +I   +    R+  LDL SN     +PKQ 
Sbjct: 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQV 440

Query: 418 LTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDV 477
           +                          +  L  L +  NQ     +       SL  + +
Sbjct: 441 V-------------------------KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475

Query: 478 SNN 480
             N
Sbjct: 476 HTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 79.9 bits (197), Expect = 1e-15
 Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 10/164 (6%)

Query: 85  GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLD 144
             +     L+   N  ++++      LT L +L L+ N L    K  ++   +++L+ LD
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380

Query: 145 LSGNGLIGSLTMQG-------EKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQ 197
           +S N +                 L + +N   +   R C    +  L+L  NK+  S+P+
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-CLPPRIKVLDLHSNKIK-SIPK 438

Query: 198 CLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ 241
            +  L  L+ L++ SNQL  ++P  +F  LTSL+ + L  N + 
Sbjct: 439 QVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 57/358 (15%), Positives = 117/358 (32%), Gaps = 30/358 (8%)

Query: 470 PSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRN---SLEGDVSVPLSNLQVARILDIS 526
               IL++S N +S      + + S L +L++S N    L+  V      L+    LD+S
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE---YLDLS 77

Query: 527 ENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS-SQLMTLDLRDNEF-SGNIPP 584
            NKL    + S + + +L HL L  N+ +       F + SQL  L L        ++ P
Sbjct: 78  HNKLV---KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134

Query: 585 LINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIV------DISYNLLDGSIPSCFTNIW 638
           + + + +   L+L     +   P+ L      ++          + +LD S+ +      
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 639 PWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRY 698
             ++     N   +  +++ +          +  N+  +      + Q V    +     
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254

Query: 699 E-------------SYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSG 745
                          Y G  L+ ++   + S+               ++  N + +    
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314

Query: 746 SIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFAN 803
                 S +     +D S N L   +      L  L    +  N L   +   +    
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 69.9 bits (171), Expect = 2e-12
 Identities = 64/423 (15%), Positives = 126/423 (29%), Gaps = 40/423 (9%)

Query: 378 LDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQ 437
           +D S+N     +P     + +   L++S N  S EL    +     L  + +SHN     
Sbjct: 5   VDRSKNGLI-HVPK--DLSQKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYL 60

Query: 438 IFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHW--VGNFSN 495
               +    +L +L L+ N+             +L  LD+S N     LP     GN S 
Sbjct: 61  DISVFKFNQELEYLDLSHNKLVKISCHPT---VNLKHLDLSFNAFD-ALPICKEFGNMSQ 116

Query: 496 LDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLN 555
           L  L +S   LE    +P+++L ++++L +         +             LH     
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL--QDFNTESLHIVFPT 174

Query: 556 GSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRK 615
                 +   S     +L  +     +              L+ N    N+         
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLN------ 228

Query: 616 IAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLI 675
                 +      S       +W         +       L    F        S   L 
Sbjct: 229 ------NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG---TSLKALS 279

Query: 676 FSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHA 735
                +          +                M   + + +            +     
Sbjct: 280 IHQVVSDVFGFPQSYIYEI-----------FSNMNIKNFTVSGTRMVHMLCPSKISPFLH 328

Query: 736 LNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLR--GQIPLELSELNYLAIFNVSYNDLSG 793
           L+ S+N L+ ++  +  +L  +E++ L  N+L+   +I    +++  L   ++S N +S 
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388

Query: 794 PTP 796
              
Sbjct: 389 DEK 391

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  121 bits (305), Expect = 1e-28
 Identities = 75/372 (20%), Positives = 141/372 (37%), Gaps = 33/372 (8%)

Query: 165 NNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVF 224
             + + +++ +       ++++     D         L   +++   ++ +   LP ++ 
Sbjct: 13  QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALL 71

Query: 225 ANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET---ENFPWLPRFQLKVL 281
            +   +E L+L+    +        A    ++ L +    I       F  +P   L VL
Sbjct: 72  DSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP--LLTVL 128

Query: 282 NLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLL 341
            L R ++S            L  + +S+NNL         Q  T L+ L L +N L    
Sbjct: 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT--- 184

Query: 342 HLPDSK-RDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLL 400
           H+  S    L H  +S N  +  L          +  LD S NS    +   +   V L 
Sbjct: 185 HVDLSLIPSLFHANVSYNL-LSTLAI-----PIAVEELDASHNSIN-VVRGPV--NVELT 235

Query: 401 FLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYM--SMTQLAWLYLNDNQF 458
            L L  NN + +    +L     L  +++S+N    +    +    M +L  LY+++N+ 
Sbjct: 236 ILKLQHNNLT-DTA--WLLNYPGLVEVDLSYNEL--EKIMYHPFVKMQRLERLYISNNRL 290

Query: 459 TGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQ 518
              L       P+L +LD+S+N L   +      F  L+ L +  NS+    ++ LS   
Sbjct: 291 V-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLSTHH 345

Query: 519 VARILDISENKL 530
             + L +S N  
Sbjct: 346 TLKNLTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  120 bits (302), Expect = 2e-28
 Identities = 73/448 (16%), Positives = 143/448 (31%), Gaps = 89/448 (19%)

Query: 82  NNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLE 141
           +N         ++I   +          +L +   +  + + +     P  +L + R +E
Sbjct: 21  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK--LPAALLDSFRQVE 78

Query: 142 VLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSN 201
           +L+L+             ++E ++               + +L + +N +    P    N
Sbjct: 79  LLNLNDL-----------QIEEIDTYA------FAYAHTIQKLYMGFNAIRYLPPHVFQN 121

Query: 202 LTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQIS 261
           +  L VL L  N LS +LP  +F N   L  LS+S N                     + 
Sbjct: 122 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNN--------------------NLE 160

Query: 262 RLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLL 321
           R++                                Q    L+ + LS N L       L+
Sbjct: 161 RIE----------------------------DDTFQATTSLQNLQLSSNRLT-HVDLSLI 191

Query: 322 QNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMS 381
            +   L    +  N L  L         +  L  S+N+ I ++      +  EL  L + 
Sbjct: 192 PS---LFHANVSYNLLSTLAIPI----AVEELDASHNS-INVVRGP---VNVELTILKLQ 240

Query: 382 QNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPK 441
            N+   +    +     L+ +DLS N    ++          L  + +S+N     +   
Sbjct: 241 HNNL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL-VALNLY 296

Query: 442 YMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLM 501
              +  L  L L+ N     +E        L  L + +N +   L   +     L  L +
Sbjct: 297 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTL 352

Query: 502 SRNSLEGD-VSVPLSNLQVARILDISEN 528
           S N  + + +     N+    + D  ++
Sbjct: 353 SHNDWDCNSLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  119 bits (299), Expect = 4e-28
 Identities = 89/507 (17%), Positives = 164/507 (32%), Gaps = 30/507 (5%)

Query: 83  NNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEV 142
            + +L   KI+    ++  +    LL S   +  L L    +               ++ 
Sbjct: 46  EDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE--IDTYAFAYAHTIQK 103

Query: 143 LDLSGNGL--IGSLTMQG----EKLELLNNKCREMNARI-CELKNLVELNLSWNKLDGSL 195
           L +  N +  +     Q       L L  N    +   I      L  L++S N L+   
Sbjct: 104 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 163

Query: 196 PQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRL 255
                  T L+ L L+SN+L+ ++ +S+  +L      ++S N       LS LA    +
Sbjct: 164 DDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFH---ANVSYNL------LSTLAIPIAV 213

Query: 256 EVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGT 315
           E L  S   I     P     +L +L L+  N++      L Y   L  +DLS+N L   
Sbjct: 214 EELDASHNSINVVRGPVNV--ELTILKLQHNNLT-DTAWLLNYP-GLVEVDLSYNELE-K 268

Query: 316 FPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPEL 375
                     +LE L++ NN L  L         L  L +S+N+ +  +  N       L
Sbjct: 269 IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQ-FDRL 326

Query: 376 VYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFG 435
             L +  NS   ++         L  L LS N++     +         A  +   +   
Sbjct: 327 ENLYLDHNSIV-TLKL--STHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKI 383

Query: 436 GQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSN 495
                  +   +    YL+       L   +           + + ++            
Sbjct: 384 DYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQ 443

Query: 496 LDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHL-FLHNNSL 554
             V L     LE +V+   + +Q      I + +L   L    + +   + L        
Sbjct: 444 GGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARS 503

Query: 555 NGSIPSALFQSSQLMTLDLRDNEFSGN 581
           + ++        +     LR+ +    
Sbjct: 504 SDNLNKVFTHLKERQAFKLRETQARRT 530

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  114 bits (287), Expect = 1e-26
 Identities = 79/386 (20%), Positives = 138/386 (35%), Gaps = 26/386 (6%)

Query: 243 SFSLSVLANHSRLEVLQISRLQIE-TENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYD 301
               S L        + I     +    F  +     K++  +   +     + L     
Sbjct: 17  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ 76

Query: 302 LRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLL-HLPDSKRDLLHLVISNNNF 360
           +  ++L+   +     T+       ++ L++  N ++ L  H+  +   L  LV+  N+ 
Sbjct: 77  VELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND- 134

Query: 361 IGMLPDNFGMILPELVYLDMSQNSFEGSIPPSM-GYTVRLLFLDLSSNNFSGELPKQFLT 419
           +  LP       P+L  L MS N+ E  I       T  L  L LSSN  +  +    + 
Sbjct: 135 LSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIP 192

Query: 420 GCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSN 479
              SL   NVS+N               +  L  + N     +   +     L IL + +
Sbjct: 193 ---SLFHANVSYNLL--STLAI---PIAVEELDASHNSIN-VVRGPVN--VELTILKLQH 241

Query: 480 NMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFN 539
           N L+     W+ N+  L  + +S N LE  +  P   +Q    L IS N+L   L     
Sbjct: 242 NNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQ 298

Query: 540 HSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRG 599
              +L  L L +N L   +     Q  +L  L L  N     +    +    L+ L L  
Sbjct: 299 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTH--HTLKNLTLSH 354

Query: 600 NNLQGNIPQQLC-HLRKIAIVDISYN 624
           N+   N  + L  ++ + A+ D   +
Sbjct: 355 NDWDCNSLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 83.4 bits (206), Expect = 1e-16
 Identities = 58/336 (17%), Positives = 128/336 (38%), Gaps = 41/336 (12%)

Query: 472 LHILDVSNNMLSGQLPH--WVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENK 529
               DV  +M +  +         +N  ++    +++    +  L + +   +L++++ +
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 86

Query: 530 LYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS-SQLMTLDLRDNEFSGNIPPLINE 588
           +     ++F ++ ++  L++  N++   +P  +FQ+   L  L L  N+ S ++P  I  
Sbjct: 87  IEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFH 144

Query: 589 D-SNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPF 647
           +   L  L +  NNL+            +  + +S N L     S   ++          
Sbjct: 145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL---------- 194

Query: 648 NGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLE 707
                 +   V +            NL+ +      + +       + N     +G V  
Sbjct: 195 ------FHANVSY------------NLLSTLAIPIAVEE----LDASHNSINVVRGPVNV 232

Query: 708 YMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKL 767
            +T L L  N LT    + +     L  ++LS+N L   +   F  ++ +E + +S N+L
Sbjct: 233 ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290

Query: 768 RGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFAN 803
              + L    +  L + ++S+N L     N  QF  
Sbjct: 291 V-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR 325

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.9 bits (132), Expect = 8e-08
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 712 LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQI 771
           +DLS NEL   +      +Q L  L +S+N L  ++      +  ++ +DLS+N L   +
Sbjct: 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HV 316

Query: 772 PLELSELNYLAIFNVSYNDLS 792
                + + L    + +N + 
Sbjct: 317 ERNQPQFDRLENLYLDHNSIV 337

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  116 bits (292), Expect = 2e-28
 Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 45/345 (13%)

Query: 87  LKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLS 146
               + L       S +L P    L+     +    N    +       N  N ++   +
Sbjct: 11  SSGRENLYF---QGSTALRPYHDVLSQWQRHYNADRNR---WHSAWRQANSNNPQIETRT 64

Query: 147 GNGL------IGSLTMQG-EKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCL 199
           G  L      +   T  G   LEL +    +   +   L +L  + +    L   LP  +
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTM 123

Query: 200 SNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSF--SLSVLANHSRLEV 257
                L  L L  N L   LP S  A+L  L  LS+            L+        + 
Sbjct: 124 QQFAGLETLTLARNPLR-ALPAS-IASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 258 LQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFP 317
           L                   L+ L L    I  ++P+ +    +L+ + + ++ L+    
Sbjct: 182 LV-----------------NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALG 222

Query: 318 TWLLQNNTKLEFLFLFNNFLKGLLHLPDSK---RDLLHLVISNNNFIGMLPDNFGMILPE 374
              + +  KLE L L       L + P        L  L++ + + +  LP +    L +
Sbjct: 223 PA-IHHLPKLEELDLRGC--TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-LTQ 278

Query: 375 LVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLT 419
           L  LD+        +P  +        + +   +   +L +    
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILV-PPHLQAQLDQHRPV 322

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  108 bits (272), Expect = 9e-26
 Identities = 57/379 (15%), Positives = 102/379 (26%), Gaps = 81/379 (21%)

Query: 136 NLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDG-- 193
           +    E L   G+  +        + +   N  R          N     +         
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK 69

Query: 194 SLPQCLSNLTY--LRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLAN 251
           +    L + T      L+L S  L    P   F  L+ L+++++                
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAA------------- 114

Query: 252 HSRLEVL--QISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSH 309
              L  L   + +               L+ L L R  +   +P+ +     LR + +  
Sbjct: 115 --GLMELPDTMQQFA------------GLETLTLARNPLR-ALPASIASLNRLRELSIRA 159

Query: 310 NNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFG 369
                  P  L   +   E   L N               L  L +     I  LP +  
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVN---------------LQSLRLEWTG-IRSLPASIA 203

Query: 370 MILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNV 429
             L  L  L +  +    ++ P++ +  +L  LDL         P  F            
Sbjct: 204 N-LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIF------------ 249

Query: 430 SHNYFGGQIFPKYMSMTQLAWLYLND-NQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPH 488
                 G           L  L L D +     L   +     L  LD+   +   +LP 
Sbjct: 250 ------GG-------RAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

Query: 489 WVGNFSNLDVLLMSRNSLE 507
            +       ++L+  +   
Sbjct: 296 LIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  107 bits (269), Expect = 2e-25
 Identities = 62/382 (16%), Positives = 117/382 (30%), Gaps = 67/382 (17%)

Query: 102 ESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKL 161
            S        +   +L+ +G+     +    VL   +     D +               
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYH--DVLSQWQRHYNADRNRWHSAWRQA-NSNNP 58

Query: 162 ELLNNKCREMNA-----RICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLS 216
           ++     R + A             V L L    L    P     L++L+ + + +  L 
Sbjct: 59  QIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM 117

Query: 217 GNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVL--QISRLQIETENFPWLP 274
             LP +       LE L+L+ N                L  L   I+ L           
Sbjct: 118 -ELPDT-MQQFAGLETLTLARNP---------------LRALPASIASLN---------- 150

Query: 275 RFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFN 334
             +L+ L++R C     +P  L              +   +     L N   L+ L L  
Sbjct: 151 --RLRELSIRACPELTELPEPL-------------ASTDASGEHQGLVN---LQSLRLEW 192

Query: 335 NFLKGLLHLPDSK---RDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPP 391
             ++    LP S    ++L  L I N+  +  L       LP+L  LD+   +   + PP
Sbjct: 193 TGIR---SLPASIANLQNLKSLKIRNSP-LSALGPAIHH-LPKLEELDLRGCTALRNYPP 247

Query: 392 SMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMS-MTQLAW 450
             G    L  L L   +    LP   +     L  +++       ++ P  ++ +     
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRL-PSLIAQLPANCI 305

Query: 451 LYLNDNQFTGRLEEGLLNAPSL 472
           + +  +      +   +  P+ 
Sbjct: 306 ILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (258), Expect = 4e-24
 Identities = 56/337 (16%), Positives = 106/337 (31%), Gaps = 34/337 (10%)

Query: 278 LKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFL 337
            + L  +           L         D +  + A     W   N+   +        L
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSA-----WRQANSNNPQIETRTGRAL 68

Query: 338 KGLLHLPD--SKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGY 395
           K    L +  ++   + L + +   +   PD     L  L ++ +        +P +M  
Sbjct: 69  KATADLLEDATQPGRVALELRSVP-LPQFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQ 125

Query: 396 TVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLND 455
              L  L L+ N     LP   +     L  +++                 +L    L +
Sbjct: 126 FAGLETLTLARNPLR-ALPAS-IASLNRLRELSIRAC-------------PELT--ELPE 168

Query: 456 NQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVP-- 513
              +           +L  L +    +   LP  + N  NL  L +  + L    ++   
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS---ALGPA 224

Query: 514 LSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDL 573
           + +L     LD+            F   + L  L L + S   ++P  + + +QL  LDL
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

Query: 574 RDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQL 610
           R       +P LI +      +L+   +LQ  + Q  
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVP-PHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (252), Expect = 3e-23
 Identities = 52/269 (19%), Positives = 81/269 (30%), Gaps = 53/269 (19%)

Query: 85  GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLP----NLRNL 140
             L  L+ + I        L   +     L +L L  N L       + LP    +L  L
Sbjct: 101 FRLSHLQHMTIDAAGL-MELPDTMQQFAGLETLTLARNPL-------RALPASIASLNRL 152

Query: 141 EVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLS 200
             L +     +  L       +               L NL  L L W  +  SLP  ++
Sbjct: 153 RELSIRACPELTELPEPLASTDASGE--------HQGLVNLQSLRLEWTGIR-SLPASIA 203

Query: 201 NLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVL-- 258
           NL  L+ L + ++ LS  L  +   +L  LE L L G                 L     
Sbjct: 204 NLQNLKSLKIRNSPLSA-LGPA-IHHLPKLEELDLRGCT--------------ALRNYPP 247

Query: 259 QISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPT 318
                              LK L L+ C+   T+P  +     L  +DL         P+
Sbjct: 248 IFGGRA------------PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

Query: 319 WLLQNNTKLEFLFLFNNFLKGLL-HLPDS 346
             +        + +  +    L  H P +
Sbjct: 296 L-IAQLPANCIILVPPHLQAQLDQHRPVA 323

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.8 bits (221), Expect = 3e-19
 Identities = 48/336 (14%), Positives = 96/336 (28%), Gaps = 51/336 (15%)

Query: 302 LRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFI 361
              +    +     +   L    ++ +  +  +           +  +   +       +
Sbjct: 14  RENLYFQGSTALRPYHDVL----SQWQRHYNADRNRWHSAWRQ-ANSNNPQIETRTGRAL 68

Query: 362 GMLPDNFG-MILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTG 420
               D       P  V L++         P        L  + + +     ELP      
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM--- 123

Query: 421 CVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNN 480
                           Q          L  L L  N     L   + +   L  L +   
Sbjct: 124 ---------------QQ-------FAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160

Query: 481 MLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNH 540
               +LP  + +                     L NLQ    L +    +   L  S  +
Sbjct: 161 PELTELPEPLASTDASGEHQG------------LVNLQ---SLRLEWTGIRS-LPASIAN 204

Query: 541 SSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGN 600
             +L  L + N+ L+ ++  A+    +L  LDLR      N PP+    + L+ L+L+  
Sbjct: 205 LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263

Query: 601 NLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTN 636
           +    +P  +  L ++  +D+   +    +PS    
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.8 bits (156), Expect = 6e-11
 Identities = 33/157 (21%), Positives = 51/157 (32%), Gaps = 30/157 (19%)

Query: 85  GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLP----NLRNL 140
             L  L+ L + +     SL   + +L +L SL +  + L         L     +L  L
Sbjct: 180 QGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPL-------SALGPAIHHLPKL 231

Query: 141 EVLDLSGNGL-------IGSLTMQGEKLELLN----NKCREMNARICELKNLVELNLSWN 189
           E LDL G           G        L+ L     +    +   I  L  L +L+L   
Sbjct: 232 EELDLRGCTALRNYPPIFGGRA----PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

Query: 190 KLDGSLPQC---LSNLTYLRVLDLTSNQLSGNLPISV 223
                LP     L     + V      QL  + P++ 
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.7 bits (148), Expect = 5e-10
 Identities = 24/187 (12%), Positives = 49/187 (26%), Gaps = 8/187 (4%)

Query: 460 GRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQV 519
           G       ++     L    +         +  +        +R           +N   
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWR----QANSNN 57

Query: 520 ARILDISENKLYG-PLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEF 578
            +I   +   L                 L L +  L    P   F+ S L  + +     
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL 116

Query: 579 SGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIW 638
              +P  + + + L  L L  N L+  +P  +  L ++  + I        +P    +  
Sbjct: 117 M-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 639 PWMEEGD 645
              E   
Sbjct: 175 ASGEHQG 181

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 3/78 (3%)

Query: 712 LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQI 771
           L+L S  L  + P     L  L  + +    L   +P +      +E++ L+ N LR  +
Sbjct: 86  LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-AL 142

Query: 772 PLELSELNYLAIFNVSYN 789
           P  ++ LN L   ++   
Sbjct: 143 PASIASLNRLRELSIRAC 160

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 18/94 (19%), Positives = 31/94 (32%)

Query: 704 GVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLS 763
             L  +  LDL         P   G    L  L L       ++P     L  +E +DL 
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285

Query: 764 YNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPN 797
                 ++P  +++L    I  V  +  +    +
Sbjct: 286 GCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 11/96 (11%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSY- 764
           L ++  + + +  L  E+P  +     L  L L+ N L  ++P S ++L  +  + +   
Sbjct: 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160

Query: 765 NKL--------RGQIPLELSELNYLAIFNVSYNDLS 792
            +L              E   L  L    + +  + 
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.8 bits (130), Expect = 9e-08
 Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 3/98 (3%)

Query: 696 NRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLK 755
           +   S +   L  +  L L    +   +P++I  LQ L +L + ++ LS ++  +  +L 
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLP 229

Query: 756 MIESMDLSYNKLRGQIPLELSELNYLAIFNVS-YNDLS 792
            +E +DL         P        L    +   ++L 
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 712 LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLS-YNKLRGQ 770
           L + ++ L+  +  AI +L +L  L+L       + P  F     ++ + L   + L   
Sbjct: 211 LKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-T 268

Query: 771 IPLELSELNYLAIFNVSYN 789
           +PL++  L  L   ++   
Sbjct: 269 LPLDIHRLTQLEKLDLRGC 287

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 11/90 (12%)

Query: 712 LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMI---------ESMDL 762
           L L+ N L   +P++I  L  L  L++        +P   ++             +S+ L
Sbjct: 132 LTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 763 SYNKLRGQIPLELSELNYLAIFNVSYNDLS 792
            +  +R  +P  ++ L  L    +  + LS
Sbjct: 191 EWTGIR-SLPASIANLQNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 2/68 (2%)

Query: 712 LDLSS-NELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQ 770
           L L   + L   +P  I  L +L  L+L        +P   + L     + +  +     
Sbjct: 258 LILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316

Query: 771 IPLELSEL 778
                   
Sbjct: 317 DQHRPVAR 324

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  116 bits (293), Expect = 3e-27
 Identities = 101/469 (21%), Positives = 168/469 (35%), Gaps = 41/469 (8%)

Query: 139 NLEVLDLSGNGL-------IGSLTMQGEKLELLNNKCREMNARICE-LKNLVELNLSWNK 190
             + L LS N +       I  L+ +   L L +N+ R ++  +    ++L  L++S N+
Sbjct: 53  RTKALSLSQNSISELRMPDISFLS-ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 191 LDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLA 250
           L  ++      +  LR LDL+ N          F NLT L +L LS   F+    L V  
Sbjct: 112 L-QNIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168

Query: 251 NHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHN 310
            H    +L +    I+      L      VL+L     S            L ++ LS+ 
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228

Query: 311 NLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSK----------RDLLHLVISNNNF 360
            L       L+   ++L       N     +                R + +L I N   
Sbjct: 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288

Query: 361 IGML----PDNFGMILPELVYLDMSQNSFEGSIPPSMGYT--VRLLFLDLSSNNFSGELP 414
              +           L  L+   +    F         Y+    +    LS ++ +  + 
Sbjct: 289 TERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISD-TPFIH 345

Query: 415 KQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFT--GRLEEGLLNAPSL 472
                   S  F+N + N F   +F    ++ +L  L L  N      ++     N  SL
Sbjct: 346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL 405

Query: 473 HILDVSNNML-SGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPL-SNLQVARILDISENKL 530
             LDVS N L S           ++ VL +S N L G V   L   ++V   LD+  N++
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKV---LDLHNNRI 462

Query: 531 YGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS-SQLMTLDLRDNEF 578
              +     H  +L  L + +N L  S+P  +F   + L  + L DN +
Sbjct: 463 MS-IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  106 bits (266), Expect = 4e-24
 Identities = 93/488 (19%), Positives = 171/488 (35%), Gaps = 75/488 (15%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLP--NLRNLEVL 143
            L +L++L +  N        +      L  L +  N L       + +    + +L  L
Sbjct: 74  FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL-------QNISCCPMASLRHL 126

Query: 144 DLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNL- 202
           DLS N                      +      L  L  L LS  K        +++L 
Sbjct: 127 DLSFNDF----------------DVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170

Query: 203 TYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISR 262
               +LDL S  + G    S+    T++ +L    N+    FS+ V  + + L  LQ+S 
Sbjct: 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL---FSVQVNMSVNALGHLQLSN 227

Query: 263 LQIETENFPWLPRFQ------LKVLNLRRCNISGTIPSFLQ-----YQYDLRYIDLSHNN 311
           +++  EN   L  F         +LN+   +I  T    ++     +   + Y+++ +  
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287

Query: 312 LAGTFPTWLLQN-NTKLEFLFLFNNFLKGLLHLPDSKRDLL-HLVISN--NNFIGMLPDN 367
           +             T L+ L + +   +  L   ++   +   + I     +    +   
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347

Query: 368 FGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQF--LTGCVSLA 425
                    +L+ +QN F  S+        RL  L L  N       K         SL 
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLE 406

Query: 426 FMNVSHNYFGGQIFPKYMS-MTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSG 484
            ++VS N      + +  +    +  L L+ N  TG +   L   P + +LD+ NN +  
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM- 463

Query: 485 QLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSL 544
            +P  V +   L  L ++ N L+   SVP                     +  F+  +SL
Sbjct: 464 SIPKDVTHLQALQELNVASNQLK---SVP---------------------DGVFDRLTSL 499

Query: 545 WHLFLHNN 552
            +++LH+N
Sbjct: 500 QYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  101 bits (252), Expect = 3e-22
 Identities = 82/466 (17%), Positives = 156/466 (33%), Gaps = 64/466 (13%)

Query: 184 LNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGS 243
           L+LS N +       +S L+ LRVL L+ N++  +L   VF     LEYL +S N  Q +
Sbjct: 57  LSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-N 114

Query: 244 FSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLR 303
            S   +A+   L  L +S    +    P    F     NL +                L 
Sbjct: 115 ISCCPMAS---LRHLDLSFNDFDV--LPVCKEFG----NLTK----------------LT 149

Query: 304 YIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKG--LLHLPDSKRDLLHLVISNNNFI 361
           ++ LS           +   +     L L +  +KG     L      +LHLV   N+  
Sbjct: 150 FLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLF 209

Query: 362 GMLPDNFGMILP--ELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLT 419
            +  +     L   +L  + ++  + +  +      T     L+++  +           
Sbjct: 210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK- 268

Query: 420 GCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNA-----PSLHI 474
                                ++     + +L + +   T R++            SL I
Sbjct: 269 -------------------LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMI 309

Query: 475 LDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPL 534
             V N +           F+ +++ ++S +       V   +      L+ ++N     +
Sbjct: 310 EHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV 369

Query: 535 EFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEF----SGNIPPLINEDS 590
               +    L  L L  N L  +       +  + +L+  D       S           
Sbjct: 370 FQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428

Query: 591 NLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTN 636
           ++  L L  N L G++ + L    K+ ++D+  N +  SIP   T+
Sbjct: 429 SILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTH 471

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 88.0 bits (218), Expect = 4e-18
 Identities = 64/419 (15%), Positives = 125/419 (29%), Gaps = 52/419 (12%)

Query: 85  GSLKQLKILNIGFNSFSE-SLVPLLTSLTSLTSLFLEGNNLG----VGFKPMKVLPNLRN 139
             +  L+ L++ FN F    +     +LT LT L L          +    + +   L +
Sbjct: 118 CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLD 177

Query: 140 LEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARIC-ELKNLVELNLSWNKLDGSLPQC 198
           L    + G             L L+ +     + ++   +  L  L LS  KL+    Q 
Sbjct: 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237

Query: 199 LSNLTYLRVLDLTSNQLSGN---------LPISVFANLTSLEYLSLSGNNFQGSFSLSVL 249
           L           T   ++           + +  F     +EYL++              
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297

Query: 250 AN-HSRLEVLQISRLQIETENFPWLPRF----QLKVLNLRRCNISGTIPSFLQYQYDLRY 304
               + L+ L I  ++ +   F     +    ++ +  L   +                +
Sbjct: 298 TYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF 357

Query: 305 IDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGL---LHLPDSKRDLLHLVISNNNFI 361
           ++ + N               +L+ L L  N LK       +  +   L  L +S N+  
Sbjct: 358 LNFTQNVF-TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416

Query: 362 GMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGC 421
               D        ++ L++S N   GS+   +    ++  LDL +N     +PK      
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVT--- 470

Query: 422 VSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNN 480
                                  +  L  L +  NQ     +       SL  + + +N
Sbjct: 471 ----------------------HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 76.4 bits (188), Expect = 1e-14
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 8/163 (4%)

Query: 85  GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLD 144
            S      LN   N F++S+    ++L  L +L L+ N L   FK   +  N+ +LE LD
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409

Query: 145 LSGNGL----IGSLTMQGEKLELLNNKCREMNARI--CELKNLVELNLSWNKLDGSLPQC 198
           +S N L            E + +LN     +   +  C    +  L+L  N++  S+P+ 
Sbjct: 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKD 468

Query: 199 LSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ 241
           +++L  L+ L++ SNQL  ++P  VF  LTSL+Y+ L  N + 
Sbjct: 469 VTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 74.5 bits (183), Expect = 6e-14
 Identities = 53/257 (20%), Positives = 95/257 (36%), Gaps = 51/257 (19%)

Query: 82  NNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLE 141
            +  +LK L I ++    F  S   L +    +    L  ++    F  M   P+  +  
Sbjct: 299 YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT--PFIHMVCPPSPSSFT 356

Query: 142 VLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQ---C 198
            L+ + N             + +   C         LK L  L L  N L  +  +    
Sbjct: 357 FLNFTQNVF----------TDSVFQGCS-------TLKRLQTLILQRNGLK-NFFKVALM 398

Query: 199 LSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVL 258
             N++ L  LD++ N L+ +      A   S+  L+LS N   GS               
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV-------------- 444

Query: 259 QISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPT 318
                      F  LP  ++KVL+L    I  +IP  + +   L+ ++++ N L  + P 
Sbjct: 445 -----------FRCLPP-KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPD 490

Query: 319 WLLQNNTKLEFLFLFNN 335
            +    T L++++L +N
Sbjct: 491 GVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 73.4 bits (180), Expect = 2e-13
 Identities = 63/367 (17%), Positives = 119/367 (32%), Gaps = 32/367 (8%)

Query: 451 LYLNDNQFTGRLEEG-LLNAPSLHILDVSNNMLSGQLPHWV-GNFSNLDVLLMSRNSLEG 508
           L L+ N  +  L    +     L +L +S+N +   L   V     +L+ L +S N L+ 
Sbjct: 57  LSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ- 113

Query: 509 DVSVPLSNLQVARILDISENKL-YGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQ 567
             ++    +   R LD+S N     P+   F + + L  L L        +         
Sbjct: 114 --NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHLH 170

Query: 568 LMT--LDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNL 625
           L    LDL      G       +  N   L L  +       Q    +  +  + +S   
Sbjct: 171 LSCILLDLVSYHIKGG-ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229

Query: 626 LDGSIPSCFTNIWPWMEEGDPFNGFVF--------GYTLVVEHFPAISAYYNSTLNLIFS 677
           L+             +  G                    + + F      Y +  NL  +
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289

Query: 678 GEDNREL-------RQRVEVKFMAKNRYESYKGGV---LEYMTGLDLSSNELTGEIPSAI 727
              +RE         + + ++ +    +   K  +      M    LS ++         
Sbjct: 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP 349

Query: 728 GYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLR--GQIPLELSELNYLAIFN 785
                   LN + N  + S+ +  S LK ++++ L  N L+   ++ L    ++ L   +
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409

Query: 786 VSYNDLS 792
           VS N L+
Sbjct: 410 VSLNSLN 416

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 71.4 bits (175), Expect = 6e-13
 Identities = 83/483 (17%), Positives = 155/483 (32%), Gaps = 70/483 (14%)

Query: 301 DLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSK-RDLLHLVISNNN 359
           +LR + LSHN +  +    +   N  LE+L + +N L+   ++       L HL +S N+
Sbjct: 77  ELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ---NISCCPMASLRHLDLSFND 132

Query: 360 FIGM-LPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRL--LFLDLSSNNFSGELPKQ 416
           F  + +   FG  L +L +L +S   F   +       + L  + LDL S +  G   + 
Sbjct: 133 FDVLPVCKEFGN-LTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSYHIKGGETES 190

Query: 417 FLTGCVSLAFMNVSHNY------FGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAP 470
                 ++  +    N               ++ ++ +     N  +    L E      
Sbjct: 191 LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT 250

Query: 471 SLHILDVSNNMLSGQLPHWVGNFSNLDV--LLMSRNSLEG-----DVSVPLSNLQVARIL 523
            L++                  F    V  L +   ++       + +   + L+   I 
Sbjct: 251 LLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIE 310

Query: 524 DISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIP 583
            +         E  ++  + +    L  +             S    L+   N F+ ++ 
Sbjct: 311 HVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVF 370

Query: 584 PLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEE 643
              +    L+ L      LQ N    L +  K+A   ++ N+          N       
Sbjct: 371 QGCSTLKRLQTL-----ILQRN---GLKNFFKVA--LMTKNMSSLETLDVSLNSLNSHAY 420

Query: 644 GDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKG 703
                       L        +   N     +F     R L  +V+V             
Sbjct: 421 DRTCAWAESILVL--------NLSSNMLTGSVF-----RCLPPKVKV------------- 454

Query: 704 GVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPR-SFSNLKMIESMDL 762
                   LDL +N +   IP  + +LQ L  LN++ N L  S+P   F  L  ++ + L
Sbjct: 455 --------LDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWL 504

Query: 763 SYN 765
             N
Sbjct: 505 HDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 84/486 (17%), Positives = 164/486 (33%), Gaps = 55/486 (11%)

Query: 304 YIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLP----DSKRDLLHLVISNNN 359
            +D S+ NL    P  L     + + L L  N +     L         +L  L +S+N 
Sbjct: 35  MVDYSNRNLT-HVPKDLP---PRTKALSLSQNSIS---ELRMPDISFLSELRVLRLSHNR 87

Query: 360 FIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLT 419
            I  L  +  +   +L YLD+S N  + +I         L  LDLS N+F      +   
Sbjct: 88  -IRSLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFG 143

Query: 420 GCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSN 479
               L F+ +S   F          +     L    +      E   L  P+  +L +  
Sbjct: 144 NLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203

Query: 480 NMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGP------ 533
           +  S        + + L  L +S   L  +    L           +   +         
Sbjct: 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263

Query: 534 ----LEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSS-----QLMTLDLRDNEFSGNIPP 584
                 F F     + +L ++N ++   I    F  S      LM   +++  F  +   
Sbjct: 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323

Query: 585 LINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEG 644
           L +  + +   +L  ++                 ++ + N+   S+    + +       
Sbjct: 324 LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383

Query: 645 DPFNGF--VFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYK 702
              NG    F   L+ ++  ++     S  +L     D                      
Sbjct: 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC------------------- 424

Query: 703 GGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDL 762
               E +  L+LSSN LTG +   +    ++  L+L +N +  SIP+  ++L+ ++ +++
Sbjct: 425 -AWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNV 480

Query: 763 SYNKLR 768
           + N+L+
Sbjct: 481 ASNQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 6/95 (6%)

Query: 710 TGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRS-FSNLKMIESMDLSYNKLR 768
             L LS N ++      I +L EL  L LSHN +  S+    F   + +E +D+S+N+L+
Sbjct: 55  KALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ 113

Query: 769 GQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFAN 803
                 ++ L +L   ++S+ND     P  K+F N
Sbjct: 114 NISCCPMASLRHL---DLSFNDFDV-LPVCKEFGN 144

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  115 bits (289), Expect = 1e-26
 Identities = 91/466 (19%), Positives = 153/466 (32%), Gaps = 102/466 (21%)

Query: 137 LRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLP 196
                VL++  +GL                    +   +    ++  L +  N L  SLP
Sbjct: 39  NNGNAVLNVGESGL------------------TTLPDCL--PAHITTLVIPDNNLT-SLP 77

Query: 197 QCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLE 256
                L   R L+++ NQL+ +LP+     L  L   S    +          A  S L 
Sbjct: 78  ALPPEL---RTLEVSGNQLT-SLPVL-PPGLLELSIFSNPLTHLP--------ALPSGLC 124

Query: 257 VLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTF 316
            L I   Q+ +   P LP   L+ L++    ++ ++P+      +L  +   +N L    
Sbjct: 125 KLWIFGNQLTS--LPVLPP-GLQELSVSDNQLA-SLPALPS---ELCKLWAYNNQL---- 173

Query: 317 PTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELV 376
            T L    + L+ L + +N L     LP    +L  L   NN     LP         L 
Sbjct: 174 -TSLPMLPSGLQELSVSDNQLA---SLPTLPSELYKLWAYNNRLT-SLPAL----PSGLK 224

Query: 377 YLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGG 436
            L +S N    S+P        L  L +S N  +  LP                      
Sbjct: 225 ELIVSGNRLT-SLPVLPS---ELKELMVSGNRLT-SLPM--------------------- 258

Query: 437 QIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNL 496
                    + L  L +  NQ T RL E L++  S   +++  N LS +    +   ++ 
Sbjct: 259 -------LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA 310

Query: 497 DVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNG 556
                     +       S  +  R L ++      P        +  WH+F   ++ + 
Sbjct: 311 PGYSGPIIRFDMA---GASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNAD- 366

Query: 557 SIPSALFQSSQLMTL---DLRDNEFSGNIPPLI---NEDSNLRALL 596
               A       ++     ++D  F   I   +    ED  LRA  
Sbjct: 367 ----AFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDEALRANT 408

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  109 bits (273), Expect = 1e-24
 Identities = 70/370 (18%), Positives = 123/370 (33%), Gaps = 61/370 (16%)

Query: 111 LTSLTSLFLEGNNLGVGFKPMKVLPN--LRNLEVLDLSGNGL------IGSLTMQGEKLE 162
                 L +  + L         LP+    ++  L +  N L         L      LE
Sbjct: 39  NNGNAVLNVGESGL-------TTLPDCLPAHITTLVIPDNNLTSLPALPPELR----TLE 87

Query: 163 LLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPIS 222
           +  N+   +      L  L   +     L             L  L +  NQL+ +LP  
Sbjct: 88  VSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT-SLP-- 137

Query: 223 VFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLN 282
                  L+ LS+S N        S+ A  S L  L     Q+ +   P LP   L+ L+
Sbjct: 138 --VLPPGLQELSVSDNQLA-----SLPALPSELCKLWAYNNQLTS--LPMLPS-GLQELS 187

Query: 283 LRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLH 342
           +    ++ ++P+      +L  +   +N L     T L    + L+ L +  N L     
Sbjct: 188 VSDNQLA-SLPTLPS---ELYKLWAYNNRL-----TSLPALPSGLKELIVSGNRLT---S 235

Query: 343 LPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFL 402
           LP    +L  L++S N  +  LP         L+ L + +N     +P S+ +      +
Sbjct: 236 LPVLPSELKELMVSGNR-LTSLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTV 289

Query: 403 DLSSNNFSGELPKQFLTGCVSLAFMN---VSHNYFGGQIFPKYMSMTQLAWLYLNDNQFT 459
           +L  N  S E   Q L    S    +   +  +  G     +  ++   A  +L   +  
Sbjct: 290 NLEGNPLS-ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREG 348

Query: 460 GRLEEGLLNA 469
                   + 
Sbjct: 349 EPAPADRWHM 358

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  100 bits (250), Expect = 6e-22
 Identities = 74/343 (21%), Positives = 112/343 (32%), Gaps = 50/343 (14%)

Query: 302 LRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFI 361
              +++  + L  T P  L  +   +  L + +N L     LP    +L  L +S N  +
Sbjct: 42  NAVLNVGESGLT-TLPDCLPAH---ITTLVIPDNNLT---SLPALPPELRTLEVSGNQ-L 93

Query: 362 GMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGC 421
             LP      L EL                       L  L +  N  +  LP       
Sbjct: 94  TSLPVLPPG-LLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLT-SLPVLPP--- 141

Query: 422 VSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNM 481
             L  ++VS N       P     ++L  L+  +NQ T  L         L  L VS+N 
Sbjct: 142 -GLQELSVSDNQL--ASLPA--LPSELCKLWAYNNQLT-SLPMLP---SGLQELSVSDNQ 192

Query: 482 LSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVP--LSNLQVARILDISENKLYGPLEFSFN 539
           L+  LP        L       N L    S+P   S L+    L +S N+L         
Sbjct: 193 LA-SLPTLPSELYKLWAY---NNRLT---SLPALPSGLKE---LIVSGNRL----TSLPV 238

Query: 540 HSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRG 599
             S L  L +  N L  S+P      S L++L +  N+ +  +P  +   S+   + L G
Sbjct: 239 LPSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293

Query: 600 NNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWME 642
           N L     Q L  +             D +  S          
Sbjct: 294 NPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHL 336

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.1 bits (239), Expect = 1e-20
 Identities = 61/309 (19%), Positives = 104/309 (33%), Gaps = 52/309 (16%)

Query: 70  ERIKCNVTTANYNNN------GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNN 123
           + +  ++TT    +N          +L+ L +  N  + SL  L   L  L+       +
Sbjct: 57  DCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTH 115

Query: 124 LGVGFKPMKVLPNLRNLEVLDLSGNGL------IGSLTMQGEKLELLNNKCREMNARICE 177
           L               L  L + GN L         L     +L + +N+   + A    
Sbjct: 116 LP---------ALPSGLCKLWIFGNQLTSLPVLPPGLQ----ELSVSDNQLASLPALPS- 161

Query: 178 LKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSG 237
              L +L    N+L  SLP   S L     L ++ NQL+ +LP       + L  L    
Sbjct: 162 --ELCKLWAYNNQLT-SLPMLPSGLQE---LSVSDNQLA-SLP----TLPSELYKLWAYN 210

Query: 238 NNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQ 297
           N        S+ A  S L+ L +S  ++ +   P LP  +LK L +    ++ ++P    
Sbjct: 211 NRLT-----SLPALPSGLKELIVSGNRLTS--LPVLPS-ELKELMVSGNRLT-SLPMLPS 261

Query: 298 YQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISN 357
               L  + +  N L    P  L+ + +    + L  N L         +          
Sbjct: 262 ---GLLSLSVYRNQLT-RLPESLI-HLSSETTVNLEGNPLSERTLQALREITSAPGYSGP 316

Query: 358 NNFIGMLPD 366
                M   
Sbjct: 317 IIRFDMAGA 325

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 94.6 bits (235), Expect = 4e-20
 Identities = 83/442 (18%), Positives = 126/442 (28%), Gaps = 121/442 (27%)

Query: 174 RICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYL 233
           R C       LN+  + L  +LP CL    ++  L +  N L+ +LP    A    L  L
Sbjct: 35  RACLNNGNAVLNVGESGL-TTLPDCL--PAHITTLVIPDNNLT-SLP----ALPPELRTL 86

Query: 234 SLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIP 293
            +SGN                    Q++ L +           +L + +    ++     
Sbjct: 87  EVSGN--------------------QLTSLPVLPPGLL-----ELSIFSNPLTHLPALPS 121

Query: 294 SFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHL 353
                   L  + +  N L  + P         L+ L + +N L     LP    +L  L
Sbjct: 122 G-------LCKLWIFGNQLT-SLPVLP----PGLQELSVSDNQLA---SLPALPSELCKL 166

Query: 354 VISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGEL 413
              NN  +  LP         L  L +S N    S+P        L  L   +N  +  L
Sbjct: 167 WAYNNQ-LTSLPMLPS----GLQELSVSDNQLA-SLPTLPS---ELYKLWAYNNRLT-SL 216

Query: 414 PKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLH 473
           P                               + L  L ++ N+ T  L         L 
Sbjct: 217 PA----------------------------LPSGLKELIVSGNRLT-SLPVLP---SELK 244

Query: 474 ILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGP 533
            L VS N L+  LP                           S L     L +  N+L   
Sbjct: 245 ELMVSGNRLT-SLPML------------------------PSGLLS---LSVYRNQLTR- 275

Query: 534 LEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLR 593
           L  S  H SS   + L  N L+     AL + +           F         E   L 
Sbjct: 276 LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH 335

Query: 594 ALLLRGNNLQGNIPQQLCHLRK 615
             L   + L      +     +
Sbjct: 336 --LAAADWLVPAREGEPAPADR 355

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 65.7 bits (160), Expect = 4e-11
 Identities = 53/251 (21%), Positives = 88/251 (35%), Gaps = 56/251 (22%)

Query: 542 SSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNN 601
           +    L +  + L  ++P  L     + TL + DN  + ++P L      LR L + GN 
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALP---PELRTLEVSGNQ 92

Query: 602 LQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHF 661
           L  ++P     L +++I       L  ++PS    +W                 +     
Sbjct: 93  LT-SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKLW-----------------IFGNQL 133

Query: 662 PAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTG 721
            ++         L  S                  N+  S        +  L   +N+LT 
Sbjct: 134 TSLPVLPPGLQELSVSD-----------------NQLASLPAL-PSELCKLWAYNNQLT- 174

Query: 722 EIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYL 781
            +P     LQE   L++S N L+ S+P   S L     +    N+L   +P   S L  L
Sbjct: 175 SLPMLPSGLQE---LSVSDNQLA-SLPTLPSEL---YKLWAYNNRLT-SLPALPSGLKEL 226

Query: 782 AIFNVSYNDLS 792
               VS N L+
Sbjct: 227 ---IVSGNRLT 234

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 10/105 (9%)

Query: 712 LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQI 771
           L +S N LT  +P     L+EL    +S N L+ S+P   S L    S+ +  N+L  ++
Sbjct: 226 LIVSGNRLT-SLPVLPSELKEL---MVSGNRLT-SLPMLPSGL---LSLSVYRNQLT-RL 276

Query: 772 PLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLC 816
           P  L  L+     N+  N LS  T    +        Y G +   
Sbjct: 277 PESLIHLSSETTVNLEGNPLSERTLQALREITSAP-GYSGPIIRF 320

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.4 bits (115), Expect = 9e-06
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 12/81 (14%)

Query: 712 LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQI 771
           L +S N+L   +P+    L +   L   +N L+ S+P   S LK    + +S N+L   +
Sbjct: 186 LSVSDNQLA-SLPTLPSELYK---LWAYNNRLT-SLPALPSGLK---ELIVSGNRLT-SL 236

Query: 772 PLELSELNYLAIFNVSYNDLS 792
           P+  SEL  L    VS N L+
Sbjct: 237 PVLPSELKEL---MVSGNRLT 254

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 710 TGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRG 769
             L +S N LT  +P     L  L   ++  N L+  +P S  +L    +++L  N L  
Sbjct: 244 KELMVSGNRLT-SLPMLPSGLLSL---SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298

Query: 770 QIPLELSELNYL 781
           +    L E+   
Sbjct: 299 RTLQALREITSA 310

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  105 bits (264), Expect = 5e-25
 Identities = 57/254 (22%), Positives = 94/254 (37%), Gaps = 33/254 (12%)

Query: 90  LKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNG 149
              L +  N        +   LT LT L L  N L       +      +L+ LDLS NG
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 150 LIGSLT------MQGEKLELLNNKCREMNAR--ICELKNLVELNLSWNKLDGSLPQCLSN 201
           +I +++       Q E L+  ++  ++M+       L+NL+ L++S      +     + 
Sbjct: 90  VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148

Query: 202 LTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQIS 261
           L+ L VL +  N    N    +F  L +L +L LS    +                    
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-------------------- 188

Query: 262 RLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLL 321
             Q+    F  L    L+VLN+   N         +    L+ +D S N++  +    L 
Sbjct: 189 --QLSPTAFNSLSS--LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244

Query: 322 QNNTKLEFLFLFNN 335
              + L FL L  N
Sbjct: 245 HFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  103 bits (259), Expect = 2e-24
 Identities = 59/240 (24%), Positives = 84/240 (35%), Gaps = 16/240 (6%)

Query: 180 NLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLS-GNLPISVFANLTSLEYLSLSGN 238
           +   L L  NKL          LT L  L L+SN LS            TSL+YL LS N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 239 NFQGSFSL-SVLANHSRLEVLQISRLQI----ETENFPWLPRFQLKVLNLRRCNISGTIP 293
                 ++ S      +LE L      +    E   F  L    L  L++   +      
Sbjct: 89  GVI---TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR--NLIYLDISHTHTRVAFN 143

Query: 294 SFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGL-LHLPDSKRDLLH 352
                   L  + ++ N+    F   +      L FL L    L+ L     +S   L  
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203

Query: 353 LVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSM--GYTVRLLFLDLSSNNFS 410
           L +S+NN    L       L  L  LD S N    +        +   L FL+L+ N+F+
Sbjct: 204 LNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 91.2 bits (227), Expect = 3e-20
 Identities = 58/243 (23%), Positives = 98/243 (40%), Gaps = 17/243 (6%)

Query: 371 ILPELVYLDMSQNSFEGSIPPSM-GYTVRLLFLDLSSNNFS-GELPKQFLTGCVSLAFMN 428
           I      L++  N  + S+P  +     +L  L LSSN  S      Q   G  SL +++
Sbjct: 26  IPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 429 VSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLL-NAPSLHILDVSNNMLSGQLP 487
           +S N     +   ++ + QL  L    +      E  +  +  +L  LD+S+        
Sbjct: 85  LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143

Query: 488 HWVGNFSNLDVLLMSRN----SLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSS 543
                 S+L+VL M+ N    +   D+   L NL     LD+S+ +L      +FN  SS
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF---LDLSQCQLEQLSPTAFNSLSS 200

Query: 544 LWHLFLHNNSLNGSIPSALFQS-SQLMTLDLRDNEFSGNIPP--LINEDSNLRALLLRGN 600
           L  L + +N+   S+ +  ++  + L  LD   N          L +  S+L  L L  N
Sbjct: 201 LQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

Query: 601 NLQ 603
           +  
Sbjct: 259 DFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 41/187 (21%), Positives = 69/187 (36%), Gaps = 9/187 (4%)

Query: 446 TQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQ--LPHWVGNFSNLDVLLMSR 503
           +    L L  N+              L  L +S+N LS +          ++L  L +S 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 504 NSLEGDVSVPLSNLQVARILDISENKLYGPLEFS-FNHSSSLWHLFLHNNSLNGSIPSAL 562
           N +   +S     L+    LD   + L    EFS F    +L +L + +        + +
Sbjct: 88  NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGI 145

Query: 563 FQS-SQLMTLDLRDNEFSGNIPPLINED-SNLRALLLRGNNLQGNIPQQ-LCHLRKIAIV 619
           F   S L  L +  N F  N  P I  +  NL  L L    L+  +       L  + ++
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVL 204

Query: 620 DISYNLL 626
           ++S+N  
Sbjct: 205 NMSHNNF 211

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.1 bits (154), Expect = 8e-11
 Identities = 54/262 (20%), Positives = 85/262 (32%), Gaps = 50/262 (19%)

Query: 511 SVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLN-GSIPSALFQS-SQL 568
           SVP      A  L++  NKL       F+  + L  L L +N L+     S      + L
Sbjct: 21  SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL 80

Query: 569 MTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQ--LCHLRKIAIVDISYNLL 626
             LDL  N     +         L  L  + +NL+  + +      LR +  +DIS+   
Sbjct: 81  KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHT 138

Query: 627 DGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQ 686
             +    F  +                 +L               L +      N     
Sbjct: 139 RVAFNGIFNGL----------------SSLE-------------VLKM----AGNSFQEN 165

Query: 687 RVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGS 746
            +   F             L  +T LDLS  +L    P+A   L  L  LN+SHN+    
Sbjct: 166 FLPDIFTE-----------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214

Query: 747 IPRSFSNLKMIESMDLSYNKLR 768
               +  L  ++ +D S N + 
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 704 GVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLS--GSIPRSFSNLKMIESMD 761
           G+    T L+L SN+L          L +L  L+LS N LS  G   +S      ++ +D
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 762 LSYNKLRGQIPLELSELNYLAIFNVSYNDLS 792
           LS+N +   +      L  L   +  +++L 
Sbjct: 85  LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 114

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 712 LDLSSNELTGEIP--SAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRG 769
           LD   + L  ++   S    L+ L  L++SH H   +    F+ L  +E + ++ N  + 
Sbjct: 106 LDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164

Query: 770 QIPLE-LSELNYLAIFNVSYNDLSGPTPNT 798
               +  +EL  L   ++S   L   +P  
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  105 bits (265), Expect = 3e-24
 Identities = 59/253 (23%), Positives = 92/253 (36%), Gaps = 34/253 (13%)

Query: 89  QLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGN 148
             ++LN+  N      V     L  L  L L  N++      +     L NL  L+L  N
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR--TIEIGAFNGLANLNTLELFDN 122

Query: 149 GL--IGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLR 206
            L  I +                        L  L EL L  N ++       + +  LR
Sbjct: 123 RLTTIPNGAFVY-------------------LSKLKELWLRNNPIESIPSYAFNRIPSLR 163

Query: 207 VLDLTS-NQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQI 265
            LDL    +LS  +    F  L++L YL+L+  N +    +  L    +L+ L +S   +
Sbjct: 164 RLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHL 219

Query: 266 ET---ENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQ 322
                 +F  L    L+ L + +  I     +       L  I+L+HNNL    P  L  
Sbjct: 220 SAIRPGSFQGLMH--LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFT 276

Query: 323 NNTKLEFLFLFNN 335
               LE + L +N
Sbjct: 277 PLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.2 bits (198), Expect = 7e-16
 Identities = 53/257 (20%), Positives = 92/257 (35%), Gaps = 25/257 (9%)

Query: 357 NNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSM--GYTVRLLFLDLSSNNFSGELP 414
               +  +PD    I      L++ +N  +  I  +        L  L LS N+    + 
Sbjct: 51  VRKNLREVPDG---ISTNTRLLNLHENQIQ-IIKVNSFKHLR-HLEILQLSRNHIR-TIE 104

Query: 415 KQFLTGCVSLAFMNVSHN---YFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNA-P 470
                G  +L  + +  N         F   + +++L  L+L +N     +     N  P
Sbjct: 105 IGAFNGLANLNTLELFDNRLTTIPNGAF---VYLSKLKELWLRNNPIE-SIPSYAFNRIP 160

Query: 471 SLHILDVS-NNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVP-LSNLQVARILDISEN 528
           SL  LD+     LS          SNL  L ++  +L     +P L+ L     LD+S N
Sbjct: 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGN 217

Query: 529 KLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS-SQLMTLDLRDNEFSGNIPPLIN 587
            L      SF     L  L++  + +   I    F +   L+ ++L  N  +  +P  + 
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT-LLPHDLF 275

Query: 588 ED-SNLRALLLRGNNLQ 603
               +L  + L  N   
Sbjct: 276 TPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.4 bits (196), Expect = 1e-15
 Identities = 39/175 (22%), Positives = 60/175 (34%), Gaps = 22/175 (12%)

Query: 87  LKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLS 146
           L +LK L +  N            + SL  L L                 L NL  L+L+
Sbjct: 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI-SEGAFEGLSNLRYLNLA 193

Query: 147 GNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLR 206
              L         ++  L             L  L EL+LS N L    P     L +L+
Sbjct: 194 MCNL--------REIPNLTP-----------LIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 207 VLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQIS 261
            L +  +Q+   +  + F NL SL  ++L+ NN        +      LE + + 
Sbjct: 235 KLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLH 287

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.9 bits (179), Expect = 1e-13
 Identities = 44/233 (18%), Positives = 75/233 (32%), Gaps = 22/233 (9%)

Query: 402 LDLSSNNFSGELPKQFLTGCVSLAFMNVSHN---YFGGQIFPKYMSMTQLAWLYLNDNQF 458
           L+L  N     +          L  + +S N         F     +  L  L L DN+ 
Sbjct: 69  LNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN---GLANLNTLELFDNRL 124

Query: 459 TGRLEEGLL-NAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRN----SLEGDVSVP 513
           T  +  G       L  L + NN +     +      +L  L +        +       
Sbjct: 125 T-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 514 LSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS-SQLMTLD 572
           LSNL+    L+++   L      +      L  L L  N L+ +I    FQ    L  L 
Sbjct: 184 LSNLRY---LNLAMCNLREIPNLT--PLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLW 237

Query: 573 LRDNEFSGNIPPLINED-SNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYN 624
           +  ++    I     ++  +L  + L  NNL          L  +  + + +N
Sbjct: 238 MIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 52/232 (22%), Positives = 79/232 (34%), Gaps = 30/232 (12%)

Query: 541 SSSLWHLFLHNNSLNGSIPSALFQS-SQLMTLDLRDNEFSGNIPPLINED-SNLRALLLR 598
           S++   L LH N +   I    F+    L  L L  N     I        +NL  L L 
Sbjct: 63  STNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELF 120

Query: 599 GNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVV 658
            N L         +L K+  + +  N ++ SIPS              FN       L +
Sbjct: 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPS------------YAFNRIPSLRRLDL 167

Query: 659 EHFPAISAYYNSTLNLIFSGEDN-RELRQRVEVKFMAKNRYESYKGGV-LEYMTGLDLSS 716
                +S          F G  N R L        +A            L  +  LDLS 
Sbjct: 168 GELKRLSYISEGA----FEGLSNLRYLN-------LAMCNLREIPNLTPLIKLDELDLSG 216

Query: 717 NELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLR 768
           N L+   P +   L  L  L +  + +      +F NL+ +  ++L++N L 
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 53/254 (20%), Positives = 95/254 (37%), Gaps = 38/254 (14%)

Query: 520 ARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS-SQLMTLDLRDNEF 578
            R+L++ EN++      SF H   L  L L  N +  +I    F   + L TL+L DN  
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRL 124

Query: 579 SGNIPP-LINEDSNLRALLLRGNNL---QGNIPQQLCHLRKIAIVDISYNLLDGSIPSCF 634
           +  IP       S L+ L LR N +         ++  LR++ + +     L   I    
Sbjct: 125 T-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE--LKRLS-YISE-- 178

Query: 635 TNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMA 694
                       F G      L +                +    +   L +  E+  ++
Sbjct: 179 ----------GAFEGLSNLRYLNLAM------------CNLREIPNLTPLIKLDEL-DLS 215

Query: 695 KNRYESYKGGVLEYMTGL---DLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSF 751
            N   + + G  + +  L    +  +++     +A   LQ L  +NL+HN+L+      F
Sbjct: 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275

Query: 752 SNLKMIESMDLSYN 765
           + L  +E + L +N
Sbjct: 276 TPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 710 TGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRG 769
             L+L  N++     ++  +L+ L  L LS NH+      +F+ L  + +++L  N+L  
Sbjct: 67  RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT- 125

Query: 770 QIPLE-LSELNYLAIFNVSYNDLS 792
            IP      L+ L    +  N + 
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIE 149

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 9/92 (9%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLS-Y 764
           L  +  L+L  N LT     A  YL +L  L L +N +      +F+ +  +  +DL   
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170

Query: 765 NKLRGQIPLE----LSELNYLAIFNVSYNDLS 792
            +L   I       LS L YL   N++  +L 
Sbjct: 171 KRLS-YISEGAFEGLSNLRYL---NLAMCNLR 198

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  105 bits (263), Expect = 5e-24
 Identities = 57/253 (22%), Positives = 89/253 (35%), Gaps = 34/253 (13%)

Query: 89  QLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGN 148
             + LN+  N+           L  L  L L  N++      +     L +L  L+L  N
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR--QIEVGAFNGLASLNTLELFDN 133

Query: 149 GL--IGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLR 206
            L  I S   +                    L  L EL L  N ++       + +  L 
Sbjct: 134 WLTVIPSGAFEY-------------------LSKLRELWLRNNPIESIPSYAFNRVPSLM 174

Query: 207 VLDLTS-NQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQI 265
            LDL    +L   +    F  L +L+YL+L   N +    +  L     LE L++S    
Sbjct: 175 RLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHF 230

Query: 266 ET---ENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQ 322
                 +F  L    LK L +    +S    +       L  ++L+HNNL+ + P  L  
Sbjct: 231 PEIRPGSFHGLSS--LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFT 287

Query: 323 NNTKLEFLFLFNN 335
               L  L L +N
Sbjct: 288 PLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 97.9 bits (244), Expect = 1e-21
 Identities = 60/285 (21%), Positives = 98/285 (34%), Gaps = 49/285 (17%)

Query: 113 SLTSLFLEGNNLGVGFKPMKVLPNL-RNLEVLDLSGNGL--IGSLTMQGEKLELLNNKCR 169
             + +      L       +V   +  N   L+L  N +  I + T +            
Sbjct: 55  QFSKVVCTRRGL------SEVPQGIPSNTRYLNLMENNIQMIQADTFRH----------- 97

Query: 170 EMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTS 229
                   L +L  L L  N +        + L  L  L+L  N L+  +P   F  L+ 
Sbjct: 98  --------LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSK 148

Query: 230 LEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRL----QIETENFPWLPRFQLKVLNLRR 285
           L  L L  N  + S           L  L +  L     I    F  L    LK LNL  
Sbjct: 149 LRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF--NLKYLNLGM 205

Query: 286 CNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGL----- 340
           CNI   +P+       L  +++S N+             + L+ L++ N+ +  +     
Sbjct: 206 CNIK-DMPNLTPLVG-LEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAF 262

Query: 341 LHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSF 385
             L      L+ L +++NN +  LP +    L  LV L +  N +
Sbjct: 263 DGLA----SLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 93.7 bits (233), Expect = 3e-20
 Identities = 56/255 (21%), Positives = 89/255 (34%), Gaps = 32/255 (12%)

Query: 180 NLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNN 239
           N   LNL  N +         +L +L VL L  N +   + +  F  L SL  L L  N 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN- 133

Query: 240 FQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSF-LQY 298
                               ++ +      F +L +  L+ L LR   I  +IPS+    
Sbjct: 134 -------------------WLTVIPSGA--FEYLSK--LRELWLRNNPIE-SIPSYAFNR 169

Query: 299 QYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNN 358
              L  +DL              +    L++L L    +K + +L      L  L +S N
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVG-LEELEMSGN 228

Query: 359 NFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSM-GYTVRLLFLDLSSNNFSGELPKQF 417
           +    +       L  L  L +  +     I  +       L+ L+L+ NN S  LP   
Sbjct: 229 H-FPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDL 285

Query: 418 LTGCVSLAFMNVSHN 432
            T    L  +++ HN
Sbjct: 286 FTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 83.3 bits (206), Expect = 7e-17
 Identities = 54/257 (21%), Positives = 92/257 (35%), Gaps = 25/257 (9%)

Query: 357 NNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSM--GYTVRLLFLDLSSNNFSGELP 414
               +  +P     I     YL++ +N+ +  I           L  L L  N+   ++ 
Sbjct: 62  TRRGLSEVPQG---IPSNTRYLNLMENNIQ-MIQADTFRHLH-HLEVLQLGRNSIR-QIE 115

Query: 415 KQFLTGCVSLAFMNVSHN---YFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNA-P 470
                G  SL  + +  N         F     +++L  L+L +N     +     N  P
Sbjct: 116 VGAFNGLASLNTLELFDNWLTVIPSGAFE---YLSKLRELWLRNNPIE-SIPSYAFNRVP 171

Query: 471 SLHILDVSN-NMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVP-LSNLQVARILDISEN 528
           SL  LD+     L            NL  L +   ++     +P L+ L     L++S N
Sbjct: 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI---KDMPNLTPLVGLEELEMSGN 228

Query: 529 KLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS-SQLMTLDLRDNEFSGNIPPLIN 587
                   SF+  SSL  L++ N+ ++  I    F   + L+ L+L  N  S ++P  + 
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDLF 286

Query: 588 ED-SNLRALLLRGNNLQ 603
                L  L L  N   
Sbjct: 287 TPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 78.2 bits (193), Expect = 3e-15
 Identities = 37/175 (21%), Positives = 59/175 (33%), Gaps = 22/175 (12%)

Query: 87  LKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLS 146
           L +L+ L +  N            + SL  L L                 L NL+ L+L 
Sbjct: 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLG 204

Query: 147 GNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLR 206
              +        + +  L             L  L EL +S N      P     L+ L+
Sbjct: 205 MCNI--------KDMPNLTP-----------LVGLEELEMSGNHFPEIRPGSFHGLSSLK 245

Query: 207 VLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQIS 261
            L + ++Q+S  +  + F  L SL  L+L+ NN   S    +      L  L + 
Sbjct: 246 KLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 44/232 (18%), Positives = 76/232 (32%), Gaps = 30/232 (12%)

Query: 541 SSSLWHLFLHNNSLNGSIPSALFQS-SQLMTLDLRDNEFSGNIPPLINED-SNLRALLLR 598
            S+  +L L  N++   I +  F+    L  L L  N     I        ++L  L L 
Sbjct: 74  PSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELF 131

Query: 599 GNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVV 658
            N L         +L K+  + +  N +  SIPS              FN       L +
Sbjct: 132 DNWLTVIPSGAFEYLSKLRELWLRNNPI-ESIPS------------YAFNRVPSLMRLDL 178

Query: 659 EHFPAISAYYNSTLNLIFSGEDN-RELRQRVEVKFMAKNRYES-YKGGVLEYMTGLDLSS 716
                +           F G  N + L        +     +       L  +  L++S 
Sbjct: 179 GELKKLEYISEGA----FEGLFNLKYLN-------LGMCNIKDMPNLTPLVGLEELEMSG 227

Query: 717 NELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLR 768
           N      P +   L  L  L + ++ +S     +F  L  +  ++L++N L 
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 2/84 (2%)

Query: 710 TGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRG 769
             L+L  N +         +L  L  L L  N +      +F+ L  + +++L  N L  
Sbjct: 78  RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT- 136

Query: 770 QIPLE-LSELNYLAIFNVSYNDLS 792
            IP      L+ L    +  N + 
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIE 160

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 11/93 (11%)

Query: 706 LEYMTGLDLSSNELTGEIPS-AIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLS- 763
           L  +  L+L  N LT  IPS A  YL +L  L L +N +      +F+ +  +  +DL  
Sbjct: 122 LASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180

Query: 764 YNKLRGQIPLE----LSELNYLAIFNVSYNDLS 792
             KL   I       L  L YL   N+   ++ 
Sbjct: 181 LKKLE-YISEGAFEGLFNLKYL---NLGMCNIK 209

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  106 bits (265), Expect = 8e-24
 Identities = 54/289 (18%), Positives = 110/289 (38%), Gaps = 27/289 (9%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDL 145
           +  +    N+   S ++        L S+  +    +++    K ++ +  L N+  L L
Sbjct: 19  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDI----KSVQGIQYLPNVTKLFL 72

Query: 146 SGNGL-----IGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLS 200
           +GN L     + +L      L L  NK +++++ + +LK L  L+L  N +  S    L 
Sbjct: 73  NGNKLTDIKPLTNLK-NLGWLFLDENKIKDLSS-LKDLKKLKSLSLEHNGI--SDINGLV 128

Query: 201 NLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQI 260
           +L  L  L L +N+++    I+V + LT L+ LSL  N       +  LA  ++L+ L +
Sbjct: 129 HLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYL 182

Query: 261 SRLQIET-ENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTW 319
           S+  I        L    L VL L          +          +  +  +L       
Sbjct: 183 SKNHISDLRALAGLK--NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL---VTPE 237

Query: 320 LLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNF 368
           ++ ++   E   +  +  +    +       + +  +   F G +    
Sbjct: 238 IISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPL 286

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 92.9 bits (230), Expect = 1e-19
 Identities = 53/273 (19%), Positives = 89/273 (32%), Gaps = 41/273 (15%)

Query: 114 LTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNA 173
           +         +    K +            +L    +              N        
Sbjct: 1   MGETITVSTPI----KQIFPDDAFAETIKDNLKKKSV--------TDAVTQNE------- 41

Query: 174 RICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYL 233
               L ++ ++  + + +  S+ Q +  L  +  L L  N+L+    I    NL +L +L
Sbjct: 42  ----LNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLTD---IKPLTNLKNLGWL 92

Query: 234 SLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET-ENFPWLPRFQLKVLNLRRCNISGTI 292
            L  N  +    LS L +  +L+ L +    I        LP  QL+ L L    I  T 
Sbjct: 93  FLDENKIK---DLSSLKDLKKLKSLSLEHNGISDINGLVHLP--QLESLYLGNNKI--TD 145

Query: 293 PSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLH 352
            + L     L  + L  N ++   P   L   TKL+ L+L  N +  L  L   K  L  
Sbjct: 146 ITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLRALAGLKN-LDV 201

Query: 353 LVISNNNFIGMLPDNFGMILPELVYLDMSQNSF 385
           L + +       P N    L     +  +  S 
Sbjct: 202 LELFSQE-CLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.2 bits (179), Expect = 2e-13
 Identities = 44/245 (17%), Positives = 76/245 (31%), Gaps = 13/245 (5%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDL 145
            LK+LK L++  N  S+  +  L  L  L SL+L  N +      + VL  L  L+ L L
Sbjct: 107 DLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKI----TDITVLSRLTKLDTLSL 160

Query: 146 SGNGL-----IGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLS 200
             N +     +  LT + + L L  N   ++ A +  LKNL  L L   +         S
Sbjct: 161 EDNQISDIVPLAGLT-KLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPINHQS 218

Query: 201 NLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQI 260
           NL     +  T   L     IS   +                   +            + 
Sbjct: 219 NLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 278

Query: 261 SRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWL 320
                +     +   + +    ++    +GT  +  +      Y+             W 
Sbjct: 279 HGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHEWN 338

Query: 321 LQNNT 325
              + 
Sbjct: 339 FNTDY 343

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.7 bits (157), Expect = 7e-11
 Identities = 47/345 (13%), Positives = 98/345 (28%), Gaps = 99/345 (28%)

Query: 199 LSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVL 258
                     +L    ++          L S++ +  + ++ +   S+  +     +  L
Sbjct: 17  DDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKL 70

Query: 259 QISRLQIET-ENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFP 317
            ++  ++   +    L    L  L L    I                 DLS         
Sbjct: 71  FLNGNKLTDIKPLTNLK--NLGWLFLDENKIK----------------DLSS-------- 104

Query: 318 TWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVY 377
              L++  KL+ L L +N +  +  L                            LP+L  
Sbjct: 105 ---LKDLKKLKSLSLEHNGISDINGLVH--------------------------LPQLES 135

Query: 378 LDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQ 437
           L +  N                   D++            L+    L  +++  N    Q
Sbjct: 136 LYLGNNKIT----------------DITV-----------LSRLTKLDTLSLEDN----Q 164

Query: 438 I--FPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSN 495
           I        +T+L  LYL+ N  +      L    +L +L++ +     +  +   N   
Sbjct: 165 ISDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVV 222

Query: 496 LDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNH 540
            + +  +  SL       +S+       ++  +      E SF  
Sbjct: 223 PNTVKNTDGSLVTP--EIISDDGDYEKPNVKWHLPEFTNEVSFIF 265

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765
           L  +  L L +N++T    + +  L +L  L+L  N +S  I    + L  ++++ LS N
Sbjct: 130 LPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKN 185

Query: 766 KLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPAVLKNCS 825
            +   +   L+ L  L +  +   +      N +       +    + +L  P ++ +  
Sbjct: 186 HIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG 243

Query: 826 T 826
            
Sbjct: 244 D 244

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  102 bits (256), Expect = 5e-23
 Identities = 75/429 (17%), Positives = 136/429 (31%), Gaps = 47/429 (10%)

Query: 178 LKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSG 237
             + V         D         L  L  LD  ++ ++    ++    LT L  L  + 
Sbjct: 20  FASEVAAAFEMQATDTIS---EEQLATLTSLDCHNSSITD---MTGIEKLTGLTKLICTS 73

Query: 238 NNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQ 297
           NN   +  LS   N   L  L     ++   +   L   +L  LN     ++    S   
Sbjct: 74  NNIT-TLDLSQNTN---LTYLACDSNKLTNLDVTPLT--KLTYLNCDTNKLTKLDVSQNP 127

Query: 298 YQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISN 357
               L Y++ + N L        + +NT+L  L    N     L +    + L  L  S 
Sbjct: 128 ---LLTYLNCARNTLT----EIDVSHNTQLTELDCHLNKKITKLDVTPQTQ-LTTLDCSF 179

Query: 358 NNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQF 417
           N    +           L  L+   N+    +   +   ++L FLD SSN  + E+    
Sbjct: 180 NKITELDVSQ----NKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--- 228

Query: 418 LTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDV 477
           +T    L + + S N            +++L  L+          E  L +   L     
Sbjct: 229 VTPLTQLTYFDCSVNPLTELDVST---LSKLTTLHCIQTDLL---EIDLTHNTQLIYFQA 282

Query: 478 SNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFS 537
                  +L   V + + L +L      +     + LS       L ++  +L    E  
Sbjct: 283 EGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT---ELD 334

Query: 538 FNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLL 597
            +H++ L  L   N  +     S + +   L      + +        +  +S   A+  
Sbjct: 335 VSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSP 392

Query: 598 RGNNLQGNI 606
              +  GN 
Sbjct: 393 DLLDQFGNP 401

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 92.8 bits (231), Expect = 6e-20
 Identities = 84/487 (17%), Positives = 150/487 (30%), Gaps = 75/487 (15%)

Query: 87  LKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLS 146
                       +        L +LTSL       +++      M  +  L  L  L  +
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLD---CHNSSI----TDMTGIEKLTGLTKLICT 72

Query: 147 GNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLR 206
            N +          L+L                NL  L    NKL  +L   ++ LT L 
Sbjct: 73  SNNI--------TTLDLSQ------------NTNLTYLACDSNKL-TNLD--VTPLTKLT 109

Query: 207 VLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIE 266
            L+  +N+L+  L +S       L YL+ + N       +S     + L+       +I 
Sbjct: 110 YLNCDTNKLT-KLDVS---QNPLLTYLNCARNTLT-EIDVSHNTQLTELDCHLNK--KIT 162

Query: 267 TENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTK 326
             +       QL  L+     I+    S  +    L  ++   NN+        L  N +
Sbjct: 163 KLDVTPQT--QLTTLDCSFNKITELDVSQNKL---LNRLNCDTNNIT-KLD---LNQNIQ 213

Query: 327 LEFLFLFNNFLKGLLHLPDSK-RDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSF 385
           L FL   +N L     +  +    L +   S N  +  L  +    L +L  L   Q   
Sbjct: 214 LTFLDCSSNKLT---EIDVTPLTQLTYFDCSVNP-LTELDVS---TLSKLTTLHCIQTDL 266

Query: 386 EGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSM 445
              I  +  +  +L++          EL    +T    L  ++            +    
Sbjct: 267 L-EIDLT--HNTQLIYFQAEGCRKIKELD---VTHNTQLYLLDCQAAGITELDLSQ---N 317

Query: 446 TQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNS 505
            +L +LYLN+ + T  L+        L  L   N  +       VG    L+    +   
Sbjct: 318 PKLVYLYLNNTELT-ELDVSHN--TKLKSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQ 372

Query: 506 LEGDVSVPLSNLQV-----ARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPS 560
                   L+N  +       +LD   N +   +E             +   +L+   P+
Sbjct: 373 TITMPKETLTNNSLTIAVSPDLLDQFGNPM--NIEPGDGGVYDQATNTITWENLSTDNPA 430

Query: 561 ALFQSSQ 567
             +  + 
Sbjct: 431 VTYTFTS 437

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 85.1 bits (211), Expect = 2e-17
 Identities = 69/343 (20%), Positives = 112/343 (32%), Gaps = 49/343 (14%)

Query: 75  NVTTANYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVL 134
            +T  +      L     LN   N  ++     ++    LT L    N L         +
Sbjct: 96  KLTNLDVTPLTKLTY---LNCDTNKLTKL---DVSQNPLLTYLNCARNTL-------TEI 142

Query: 135 P--NLRNLEVLDLSGNGLIGSLTMQG----EKLELLNNKCREMNARICELKNLVELNLSW 188
              +   L  LD   N  I  L +        L+   NK  E++  + + K L  LN   
Sbjct: 143 DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDT 200

Query: 189 NKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSV 248
           N +   L   L+    L  LD +SN+L+  + ++    LT L Y   S N       +S 
Sbjct: 201 NNIT-KLD--LNQNIQLTFLDCSSNKLT-EIDVT---PLTQLTYFDCSVNPLT-ELDVST 252

Query: 249 LANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLS 308
           L+    L  L   +  +   +       QL       C     +   + +   L  +D  
Sbjct: 253 LSK---LTTLHCIQTDLLEIDLTHNT--QLIYFQAEGCRKIKELD--VTHNTQLYLLDCQ 305

Query: 309 HNNLAGTFPTWL-LQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDN 367
              +     T L L  N KL +L+L N  L     L  S    L  +   N  I      
Sbjct: 306 AAGI-----TELDLSQNPKLVYLYLNNTELT---ELDVSHNTKLKSLSCVNAHIQDFSSV 357

Query: 368 FGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFS 410
               +P L     ++     ++P     T   L + +S +   
Sbjct: 358 GK--IPALNNNFEAEGQTI-TMPKETL-TNNSLTIAVSPDLLD 396

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 73.6 bits (181), Expect = 1e-13
 Identities = 62/356 (17%), Positives = 117/356 (32%), Gaps = 40/356 (11%)

Query: 272 WLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLF 331
           W P             +  T     +    L  +D  ++++        ++  T L  L 
Sbjct: 14  WFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG---IEKLTGLTKLI 70

Query: 332 LFNNFLKGLLHLPDSK-RDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIP 390
             +N +     L  S+  +L +L   +N  +  L       L +L YL+   N     + 
Sbjct: 71  CTSNNIT---TLDLSQNTNLTYLACDSNK-LTNLDVTP---LTKLTYLNCDTNKLT-KLD 122

Query: 391 PSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAW 450
            S      L +L+ + N  + E+    ++    L  ++   N             TQL  
Sbjct: 123 VSQ--NPLLTYLNCARNTLT-EID---VSHNTQLTELDCHLN--KKITKLDVTPQTQLTT 174

Query: 451 LYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDV 510
           L  + N+ T   E  +     L+ L+   N ++ +L   +     L  L  S N L    
Sbjct: 175 LDCSFNKIT---ELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT--- 225

Query: 511 SVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMT 570
            + ++ L      D S N L    E   +  S L  L      L   I   L  ++QL+ 
Sbjct: 226 EIDVTPLTQLTYFDCSVNPL---TELDVSTLSKLTTLHCIQTDLL-EID--LTHNTQLIY 279

Query: 571 LDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLL 626
                      +   +  ++ L  L  +   +   +   L    K+  + ++   L
Sbjct: 280 FQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTEL 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.1 bits (159), Expect = 4e-11
 Identities = 63/398 (15%), Positives = 126/398 (31%), Gaps = 43/398 (10%)

Query: 398 RLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQ 457
            L  LD  +++ + ++    +     L  +  + N        +    T L +L  + N+
Sbjct: 43  TLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNITTLDLSQ---NTNLTYLACDSNK 96

Query: 458 FTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNL 517
            T      +     L  L+   N L+ +L   V     L  L  +RN+L     + +S+ 
Sbjct: 97  LT---NLDVTPLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTLT---EIDVSHN 147

Query: 518 QVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNE 577
                LD   NK    L+ +    + L  L    N +     S       L  L+   N 
Sbjct: 148 TQLTELDCHLNKKITKLDVTPQ--TQLTTLDCSFNKITELDVSQN---KLLNRLNCDTNN 202

Query: 578 FSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNI 637
            +  +   +N++  L  L    N L   I   +  L ++   D S N L     S  + +
Sbjct: 203 IT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSKL 256

Query: 638 WPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGE--DNRELRQRVEVKFMAK 695
                             + + H   +  +       I   +   N +L     +     
Sbjct: 257 TTLHCIQTDLL------EIDLTHNTQLIYFQAEGCRKIKELDVTHNTQL----YLLDCQA 306

Query: 696 NRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLK 755
                        +  L L++ ELT E+   + +  +L +L+  + H+      S   + 
Sbjct: 307 AGITELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKIP 361

Query: 756 MIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSG 793
            + +   +  +        L+  +     +    D  G
Sbjct: 362 ALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 49/364 (13%), Positives = 102/364 (28%), Gaps = 49/364 (13%)

Query: 437 QIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNL 496
           Q F  +      A       +             +L  LD  N+ ++  +   +   + L
Sbjct: 9   QSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGL 66

Query: 497 DVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNG 556
             L+ + N++    ++ LS       L    NKL           + L +L    N L  
Sbjct: 67  TKLICTSNNIT---TLDLSQNTNLTYLACDSNKLT---NLDVTPLTKLTYLNCDTNKLTK 120

Query: 557 SIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKI 616
              S       L  L+   N  +  I   ++ ++ L  L    N     +   +    ++
Sbjct: 121 LDVSQN---PLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQL 172

Query: 617 AIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGY----TLVVEHFPA---ISAYYN 669
             +D S+N +     S    +          N           L +        +    N
Sbjct: 173 TTLDCSFNKITELDVSQNKLL----------NRLNCDTNNITKLDLNQNIQLTFLDCSSN 222

Query: 670 STLNLIFSGEDN-RELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIG 728
               +  +                 + N         L  +T L     +L  EI   + 
Sbjct: 223 KLTEIDVTPLTQLTYF-------DCSVNPLTELDVSTLSKLTTLHCIQTDLL-EID--LT 272

Query: 729 YLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSY 788
           +  +L             +    ++   +  +D     +     L+LS+   L    ++ 
Sbjct: 273 HNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNN 327

Query: 789 NDLS 792
            +L+
Sbjct: 328 TELT 331

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 95.5 bits (238), Expect = 1e-21
 Identities = 55/260 (21%), Positives = 101/260 (38%), Gaps = 27/260 (10%)

Query: 108 LTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGL-----IGSLTMQGEKLE 162
             +L +   +    +N+           +L  +  L   G G+     +  L      LE
Sbjct: 15  DPALANAIKIAAGKSNV----TDTVTQADLDGITTLSAFGTGVTTIEGVQYLN-NLIGLE 69

Query: 163 LLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPIS 222
           L +N+  ++   +  L  + EL LS N L       ++ L  ++ LDLTS Q++    ++
Sbjct: 70  LKDNQITDLAP-LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITD---VT 123

Query: 223 VFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET-ENFPWLPRFQLKVL 281
             A L++L+ L L  N      ++S LA  + L+ L I   Q+        L   +L  L
Sbjct: 124 PLAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQVSDLTPLANLS--KLTTL 178

Query: 282 NLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLL 341
                 IS    S L    +L  + L +N ++   P   L N + L  + L N  +    
Sbjct: 179 KADDNKISDI--SPLASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTNQTITNQP 233

Query: 342 HLPDSKRDLLHLVISNNNFI 361
              ++   + ++V   +   
Sbjct: 234 VFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 89.0 bits (221), Expect = 2e-19
 Identities = 53/264 (20%), Positives = 98/264 (37%), Gaps = 26/264 (9%)

Query: 134 LPNLRNLEVLDLSGNGLIGSLTMQG----EKLELLNNKCREMNARICELKNLVELNLSWN 189
            P L N   +    + +  ++T         L         +   +  L NL+ L L  N
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDN 73

Query: 190 KLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVL 249
           ++  +    L NLT +  L+L+ N L     +S  A L S++ L L+         ++ L
Sbjct: 74  QI--TDLAPLKNLTKITELELSGNPLKN---VSAIAGLQSIKTLDLTSTQIT---DVTPL 125

Query: 250 ANHSRLEVLQISRLQIET-ENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLS 308
           A  S L+VL +   QI        L    L+ L++    +S    + L     L  +   
Sbjct: 126 AGLSNLQVLYLDLNQITNISPLAGLT--NLQYLSIGNAQVSDL--TPLANLSKLTTLKAD 181

Query: 309 HNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNF 368
            N ++   P   L +   L  + L NN +  +  L ++   L  + ++N      + +  
Sbjct: 182 DNKISDISP---LASLPNLIEVHLKNNQISDVSPLANTSN-LFIVTLTNQT----ITNQP 233

Query: 369 GMILPELVYLDMSQNSFEGSIPPS 392
                 LV  ++ +      I P+
Sbjct: 234 VFYNNNLVVPNVVKGPSGAPIAPA 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.7 bits (197), Expect = 3e-16
 Identities = 49/209 (23%), Positives = 79/209 (37%), Gaps = 35/209 (16%)

Query: 85  GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLD 144
            +L ++  L +  N      V  +  L S+ +L L    +      +  L  L NL+VL 
Sbjct: 82  KNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITD----VTPLAGLSNLQVLY 135

Query: 145 LSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTY 204
           L  N +          +  L             L NL  L++   ++    P  L+NL+ 
Sbjct: 136 LDLNQI--------TNISPLAG-----------LTNLQYLSIGNAQVSDLTP--LANLSK 174

Query: 205 LRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQ 264
           L  L    N++S    IS  A+L +L  + L  N       +S LAN S L ++ ++   
Sbjct: 175 LTTLKADDNKISD---ISPLASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTNQT 228

Query: 265 IETENFPWLPRFQLKVLNLRRCNISGTIP 293
           I   N P      L V N+ +      I 
Sbjct: 229 I--TNQPVFYNNNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 42/261 (16%), Positives = 84/261 (32%), Gaps = 23/261 (8%)

Query: 198 CLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEV 257
               L     +    + ++        A+L  +  LS  G       ++  +   + L  
Sbjct: 14  PDPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIG 67

Query: 258 LQISRLQIET-ENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTF 316
           L++   QI        L   ++  L L    +   + +    Q  ++ +DL+   +    
Sbjct: 68  LELKDNQITDLAPLKNLT--KITELELSGNPLK-NVSAIAGLQ-SIKTLDLTSTQITDVT 123

Query: 317 PTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELV 376
           P   L   + L+ L+L  N +  +  L      L +L I N   +  L       L +L 
Sbjct: 124 P---LAGLSNLQVLYLDLNQITNISPLAGLTN-LQYLSIGNAQ-VSDLTPLAN--LSKLT 176

Query: 377 YLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGG 436
            L    N     I P +     L+ + L +N  S   P   L    +L  + +++     
Sbjct: 177 TLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTNQTITN 231

Query: 437 QIFPKYMSMTQLAWLYLNDNQ 457
           Q      ++     +      
Sbjct: 232 QPVFYNNNLVVPNVVKGPSGA 252

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 52/327 (15%), Positives = 100/327 (30%), Gaps = 63/327 (19%)

Query: 221 ISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET-ENFPWLPRFQLK 279
           I     L +   ++   +N          A+   +  L      + T E   +L    L 
Sbjct: 12  IFPDPALANAIKIAAGKSNVT---DTVTQADLDGITTLSAFGTGVTTIEGVQYLN--NLI 66

Query: 280 VLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKG 339
            L L+   I+  +         +  ++LS N L        +     ++ L L +  +  
Sbjct: 67  GLELKDNQIT-DLAPLKNLTK-ITELELSGNPLKNVSA---IAGLQSIKTLDLTSTQITD 121

Query: 340 LLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRL 399
           +  L                            L  L  L +  N    +I P +     L
Sbjct: 122 VTPLAG--------------------------LSNLQVLYLDLNQIT-NISP-LAGLTNL 153

Query: 400 LFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQI--FPKYMSMTQLAWLYLNDNQ 457
            +L + +   S       L     L  +    N    +I       S+  L  ++L +NQ
Sbjct: 154 QYLSIGNAQVSDL---TPLANLSKLTTLKADDN----KISDISPLASLPNLIEVHLKNNQ 206

Query: 458 FTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNL 517
            +      L N  +L I+ ++N  ++ Q        +NL V  + +            + 
Sbjct: 207 ISD--VSPLANTSNLFIVTLTNQTITNQPV---FYNNNLVVPNVVKG----------PSG 251

Query: 518 QVARILDISENKLYGPLEFSFNHSSSL 544
                  IS+N  Y     ++N +S +
Sbjct: 252 APIAPATISDNGTYASPNLTWNLTSFI 278

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 95.8 bits (239), Expect = 2e-21
 Identities = 62/373 (16%), Positives = 104/373 (27%), Gaps = 99/373 (26%)

Query: 112 TSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGL--IGSLTMQGEKLELLNNKCR 169
                L L+ N +           NL+NL  L L  N +  I                  
Sbjct: 52  PDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINNKISKISPGAFAP----------- 98

Query: 170 EMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTS 229
                   L  L  L LS N+L   LP+ +     L+ L +  N+++  +  SVF  L  
Sbjct: 99  --------LVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQ 146

Query: 230 LEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNIS 289
           +  + L  N                     +    IE   F  + +  L  + +   NI+
Sbjct: 147 MIVVELGTN--------------------PLKSSGIENGAFQGMKK--LSYIRIADTNIT 184

Query: 290 GTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRD 349
            TIP  L     L  + L  N +        L+    L  L L  N +            
Sbjct: 185 -TIPQGLPPS--LTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISA---------- 230

Query: 350 LLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNF 409
                + N +             P L  L ++ N     +P  +     +  + L +NN 
Sbjct: 231 -----VDNGSLAN---------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275

Query: 410 SGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFT-GRLEEGLL- 467
           S                  +  N F    +         + + L  N      ++     
Sbjct: 276 S-----------------AIGSNDFCPPGYNT--KKASYSGVSLFSNPVQYWEIQPSTFR 316

Query: 468 NAPSLHILDVSNN 480
                  + + N 
Sbjct: 317 CVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 91.6 bits (228), Expect = 4e-20
 Identities = 67/400 (16%), Positives = 116/400 (29%), Gaps = 124/400 (31%)

Query: 179 KNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGN 238
            +   L+L  NK+         NL  L  L L +N++S  +    FA L  LE L LS N
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN 110

Query: 239 NFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQY 298
                               Q+  L  +                                
Sbjct: 111 --------------------QLKELPEKM--PK--------------------------- 121

Query: 299 QYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNN 358
              L+ + +  N +       +     ++  + L  N LK                I N 
Sbjct: 122 --TLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLK-------------SSGIENG 165

Query: 359 NFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFL 418
            F G         + +L Y+ ++  +   +IP  +     L  L L  N  +        
Sbjct: 166 AFQG---------MKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT-------- 205

Query: 419 TGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVS 478
                     V      G        +  LA L L+ N  +      L N P L  L ++
Sbjct: 206 ---------KVDAASLKG--------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248

Query: 479 NNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSF 538
           NN L  ++P  + +   + V+ +  N++                  I  N    P   + 
Sbjct: 249 NNKLV-KVPGGLADHKYIQVVYLHNNNIS----------------AIGSNDFCPPGYNT- 290

Query: 539 NHSSSLWHLFLHNNSLN-GSIPSALFQS-SQLMTLDLRDN 576
              +S   + L +N +    I  + F+       + L + 
Sbjct: 291 -KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.5 bits (220), Expect = 4e-19
 Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 18/215 (8%)

Query: 84  NGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVL 143
               K L+ L +  N  ++    +   L  +  + L  N L            ++ L  +
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176

Query: 144 DLSGNGL--IGSLTMQG-EKLELLNNKCREMNARICE-LKNLVELNLSWNKLDGSLPQCL 199
            ++   +  I         +L L  NK  +++A   + L NL +L LS+N +       L
Sbjct: 177 RIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236

Query: 200 SNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ----GSF-SLSVLANHSR 254
           +N  +LR L L +N+L   +P    A+   ++ + L  NN        F         + 
Sbjct: 237 ANTPHLRELHLNNNKLV-KVP-GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294

Query: 255 LEVL-----QISRLQIETENFPWLPRFQLKVLNLR 284
              +      +   +I+   F  +       + L 
Sbjct: 295 YSGVSLFSNPVQYWEIQPSTFRCVYV--RAAVQLG 327

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.1 bits (219), Expect = 5e-19
 Identities = 47/263 (17%), Positives = 81/263 (30%), Gaps = 44/263 (16%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDL 145
            L +L+ L +  N   E  +P      +L  L +  N +        V   L  + V++L
Sbjct: 98  PLVKLERLYLSKNQLKE--LPEKM-PKTLQELRVHENEITK--VRKSVFNGLNQMIVVEL 152

Query: 146 SGNGL----IGSLTMQG----EKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQ 197
             N L    I +   QG      + + +     +   +    +L EL+L  NK+      
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAA 210

Query: 198 CLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSL-SVLANHSRLE 256
            L  L  L  L L+ N +S  +     AN   L  L L+ N       +   LA+H  ++
Sbjct: 211 SLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV---KVPGGLADHKYIQ 266

Query: 257 VLQISRLQIET---ENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLA 313
           V+ +    I      +F                                  + L  N + 
Sbjct: 267 VVYLHNNNISAIGSNDFCPPGYNT----KKAS----------------YSGVSLFSNPVQ 306

Query: 314 GTF-PTWLLQNNTKLEFLFLFNN 335
                    +       + L N 
Sbjct: 307 YWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.3 bits (178), Expect = 1e-13
 Identities = 45/282 (15%), Positives = 102/282 (36%), Gaps = 27/282 (9%)

Query: 357 NNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSM--GYTVRLLFLDLSSNNFSGELP 414
           ++  +  +P +   + P+   LD+  N     I           L  L L +N  S ++ 
Sbjct: 39  SDLGLEKVPKD---LPPDTALLDLQNNKIT-EIKDGDFKNLK-NLHTLILINNKIS-KIS 92

Query: 415 KQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLL-NAPSLH 473
                  V L  + +S N    +  P+ M    L  L +++N+ T ++ + +      + 
Sbjct: 93  PGAFAPLVKLERLYLSKNQL--KELPEKMP-KTLQELRVHENEIT-KVRKSVFNGLNQMI 148

Query: 474 ILDVSNNMLSGQL--PHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLY 531
           ++++  N L               L  + ++  ++    ++P         L +  NK+ 
Sbjct: 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKIT 205

Query: 532 GPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS-SQLMTLDLRDNEFSGNIPPLINEDS 590
                S    ++L  L L  NS++ ++ +    +   L  L L +N+    +P  + +  
Sbjct: 206 KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK 263

Query: 591 NLRALLLRGNNLQG------NIPQQLCHLRKIAIVDISYNLL 626
            ++ + L  NN+          P         + V +  N +
Sbjct: 264 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 63.5 bits (155), Expect = 7e-11
 Identities = 60/302 (19%), Positives = 108/302 (35%), Gaps = 61/302 (20%)

Query: 495 NLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSL 554
           +L V+  S   LE    VP        +LD+  NK+    +  F +  +L  L L NN +
Sbjct: 32  HLRVVQCSDLGLE---KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 555 NGSIPSALFQS-SQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHL 613
           +  I    F    +L  L L  N+    +P        L+ L +  N +          L
Sbjct: 89  S-KISPGAFAPLVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGL 144

Query: 614 RKIAIVDISYN-LLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTL 672
            ++ +V++  N L    I +                                        
Sbjct: 145 NQMIVVELGTNPLKSSGIEN---------------------------------------- 164

Query: 673 NLIFSGEDN-RELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPS-AIGYL 730
              F G      +R       +A     +   G+   +T L L  N++T ++ + ++  L
Sbjct: 165 -GAFQGMKKLSYIR-------IADTNITTIPQGLPPSLTELHLDGNKIT-KVDAASLKGL 215

Query: 731 QELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYND 790
             L  L LS N +S     S +N   +  + L+ NKL  ++P  L++  Y+ +  +  N+
Sbjct: 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN 274

Query: 791 LS 792
           +S
Sbjct: 275 IS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 11/70 (15%), Positives = 31/70 (44%), Gaps = 9/70 (12%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRS-------FSNLKMIE 758
             ++  L L++N+L  ++P  +   + +  + L +N++S +I  +        +      
Sbjct: 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYS 296

Query: 759 SMDLSYNKLR 768
            + L  N ++
Sbjct: 297 GVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 15/113 (13%), Positives = 30/113 (26%), Gaps = 28/113 (24%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNL----GVGFKPMKVLPNLRNLE 141
           +   L+ L++  N     +   L     +  ++L  NN+       F P        +  
Sbjct: 238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296

Query: 142 VLDLSGNGL----IGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNK 190
            + L  N +    I   T +                    +     + L   K
Sbjct: 297 GVSLFSNPVQYWEIQPSTFRC-------------------VYVRAAVQLGNYK 330

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 94.7 bits (236), Expect = 2e-21
 Identities = 56/247 (22%), Positives = 80/247 (32%), Gaps = 46/247 (18%)

Query: 90  LKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNG 149
            + + +  N  S        +  +LT L+L  N L            L  LE LDLS N 
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNA 91

Query: 150 LIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQ-CLSNLTYLRVL 208
            + S+          +            L  L  L+L    L   L       L  L+ L
Sbjct: 92  QLRSVDP-----ATFHG-----------LGRLHTLHLDRCGL-QELGPGLFRGLAALQYL 134

Query: 209 DLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETE 268
            L  N L   LP   F +L +L +L L GN                          +   
Sbjct: 135 YLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS----------------------SVPER 171

Query: 269 NFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLE 328
            F  L    L  L L +  ++   P   +    L  + L  NNL+   PT  L     L+
Sbjct: 172 AFRGLH--SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQ 228

Query: 329 FLFLFNN 335
           +L L +N
Sbjct: 229 YLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 85.0 bits (211), Expect = 3e-18
 Identities = 43/184 (23%), Positives = 68/184 (36%), Gaps = 10/184 (5%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDL 145
           + + L IL +  N  +       T L  L  L L  N   +          L  L  L L
Sbjct: 54  ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ-LRSVDPATFHGLGRLHTLHL 112

Query: 146 SGNGL--IGSLTMQG----EKLELLNNKCREMNARICE-LKNLVELNLSWNKLDGSLPQC 198
              GL  +G    +G    + L L +N  + +       L NL  L L  N++     + 
Sbjct: 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172

Query: 199 LSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVL 258
              L  L  L L  N+++ ++    F +L  L  L L  NN   +     LA    L+ L
Sbjct: 173 FRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYL 230

Query: 259 QISR 262
           +++ 
Sbjct: 231 RLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 83.1 bits (206), Expect = 2e-17
 Identities = 47/209 (22%), Positives = 76/209 (36%), Gaps = 13/209 (6%)

Query: 159 EKLELLNNKCREMNARI-CELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSG 217
           +++ L  N+   + A      +NL  L L  N L        + L  L  LDL+ N    
Sbjct: 35  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94

Query: 218 NLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVL-----QISRLQIETENFPW 272
           ++  + F  L  L  L L     Q      +    + L+ L      +  L  +T  F  
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDT--FRD 151

Query: 273 LPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFL 332
           L    L  L L    IS       +  + L  + L  N +A        ++  +L  L+L
Sbjct: 152 LG--NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYL 208

Query: 333 FNNFLKGL-LHLPDSKRDLLHLVISNNNF 360
           F N L  L        R L +L +++N +
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 80.0 bits (198), Expect = 2e-16
 Identities = 44/163 (26%), Positives = 66/163 (40%), Gaps = 11/163 (6%)

Query: 87  LKQLKILNIGFNSFSESLVP-LLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDL 145
           L  L+ L++  N+   S+ P     L  L +L L+   L        +   L  L+ L L
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE--LGPGLFRGLAALQYLYL 136

Query: 146 SGNGL--IGSLTMQG----EKLELLNNKCREMNARI-CELKNLVELNLSWNKLDGSLPQC 198
             N L  +   T +       L L  N+   +  R    L +L  L L  N++    P  
Sbjct: 137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196

Query: 199 LSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ 241
             +L  L  L L +N LS  LP    A L +L+YL L+ N + 
Sbjct: 197 FRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.9 bits (195), Expect = 4e-16
 Identities = 52/238 (21%), Positives = 81/238 (34%), Gaps = 34/238 (14%)

Query: 371 ILPELVYLDMSQNSFEGSIPPSM-GYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNV 429
           I      + +  N     +P +       L  L L SN  +  +     TG   L  +++
Sbjct: 30  IPAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDL 87

Query: 430 SHNYFGGQIFPK-YMSMTQLAWLYLNDNQFTGRLEEGLL-NAPSLHILDVSNNMLSGQLP 487
           S N     + P  +  + +L  L+L+       L  GL     +L  L + +N L     
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ---- 142

Query: 488 HWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHL 547
                            +L  D    L NL     L +  N++    E +F    SL  L
Sbjct: 143 -----------------ALPDDTFRDLGNLT---HLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 548 FLHNNSLNGSIPSALFQS-SQLMTLDLRDNEFSGNIPPLINED-SNLRALLLRGNNLQ 603
            LH N +   +    F+   +LMTL L  N  S  +P         L+ L L  N   
Sbjct: 183 LLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 7/93 (7%)

Query: 704 GVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLS 763
           G+      + L  N ++    ++    + L  L L  N L+     +F+ L ++E +DLS
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 764 YNKLRGQIPLE----LSELNYLAIFNVSYNDLS 792
            N     +       L  L+ L   ++    L 
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTL---HLDRCGLQ 118

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 712 LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLR 768
           L L  N ++     A   L  L  L L  N ++   P +F +L  + ++ L  N L 
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 712 LDLSSNELTGEIPS-AIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQ 770
           L L  N L   +P      L  L  L L  N +S    R+F  L  ++ + L  N++   
Sbjct: 134 LYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 771 IPLELSELNYLAIFNVSYNDLS 792
            P    +L  L    +  N+LS
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 706 LEYMTGLDLSSNELTGEIPS-AIGYLQELHALNLSHNHLSGSIP-RSFSNLKMIESMDLS 763
           L  +  L L    L  E+       L  L  L L  N L  ++P  +F +L  +  + L 
Sbjct: 104 LGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLH 161

Query: 764 YNKLRGQIPLELSELNYLAIFNVSYNDLS 792
            N++          L+ L    +  N ++
Sbjct: 162 GNRISSVPERAFRGLHSLDRLLLHQNRVA 190

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.5 bits (233), Expect = 1e-20
 Identities = 52/291 (17%), Positives = 98/291 (33%), Gaps = 33/291 (11%)

Query: 112 TSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGL--IGSLTMQG----EKLELLN 165
              T L L+ N++            L++L  L L  N +  I           +KL +  
Sbjct: 54  PDTTLLDLQNNDISE--LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111

Query: 166 NKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQL-SGNLPISVF 224
           N   E+   +    +LVEL +  N++        S L  +  +++  N L +       F
Sbjct: 112 NHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 225 ANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET---ENFPWLPRFQLKVL 281
             L  L YL +S           +      L  L +   +I+    E+       +L  L
Sbjct: 170 DGL-KLNYLRISEAKLT-GIPKDLPET---LNELHLDHNKIQAIELEDLLRYS--KLYRL 222

Query: 282 NLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGL- 340
            L    I       L +   LR + L +N L+   P   L +   L+ ++L  N +  + 
Sbjct: 223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG-LPDLKLLQVVYLHTNNITKVG 280

Query: 341 ------LHLPDSKRDLLHLVISNNN--FIGMLPDNFGMILPELVYLDMSQN 383
                 +     +     + + NN   +  + P  F   + + + +     
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC-VTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 92.4 bits (230), Expect = 2e-20
 Identities = 63/350 (18%), Positives = 113/350 (32%), Gaps = 61/350 (17%)

Query: 139 NLEVLDLSGNGLI---GSLTMQGEKLELLNNKCREMNAR-ICELKNLVELNLSWNKLDGS 194
           +L V+  S  GL      ++     L+L NN   E+       L++L  L L  NK+   
Sbjct: 34  HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93

Query: 195 LPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSR 254
             +  S L  L+ L ++ N L   +P ++ ++L     L +  N  +      V +    
Sbjct: 94  HEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLV---ELRIHDNRIR-KVPKGVFSGLRN 148

Query: 255 LEVLQISRLQIETENFP--WLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNL 312
           +  +++    +E   F        +L  L +    ++  IP  L     L  + L HN +
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKI 205

Query: 313 AGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMIL 372
                   L   +KL  L L +N ++               +I N +            L
Sbjct: 206 Q-AIELEDLLRYSKLYRLGLGHNQIR---------------MIENGSLSF---------L 240

Query: 373 PELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHN 432
           P L  L +  N     +P  +     L  + L +NN +                  V  N
Sbjct: 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-----------------KVGVN 282

Query: 433 YFGGQIFPKYMSMTQLAWLYLNDNQFT-GRLEEGL-LNAPSLHILDVSNN 480
            F    F   +       + L +N      ++            +   N 
Sbjct: 283 DFCPVGFG--VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.5 bits (225), Expect = 1e-19
 Identities = 50/258 (19%), Positives = 83/258 (32%), Gaps = 35/258 (13%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDL 145
            L++L+ L I  N   E  +P     +SL  L +  N +     P  V   LRN+  +++
Sbjct: 100 PLRKLQKLYISKNHLVE--IPPNL-PSSLVELRIHDNRIRK--VPKGVFSGLRNMNCIEM 154

Query: 146 SGNGL----IGSLTMQGEKLELL---NNKCREMNARICELKNLVELNLSWNKLDGSLPQC 198
            GN L           G KL  L     K   +   +   + L EL+L  NK+     + 
Sbjct: 155 GGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELED 212

Query: 199 LSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVL 258
           L   + L  L L  NQ+   +     + L +L  L L  N        + L +   L+V+
Sbjct: 213 LLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVP-AGLPDLKLLQVV 269

Query: 259 QISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLA-GTFP 317
            +    I       +       +                       I L +N +      
Sbjct: 270 YLHTNNITK-----VGVNDFCPVGFGVKRAY------------YNGISLFNNPVPYWEVQ 312

Query: 318 TWLLQNNTKLEFLFLFNN 335
               +  T    +   N 
Sbjct: 313 PATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 83.5 bits (207), Expect = 2e-17
 Identities = 53/287 (18%), Positives = 98/287 (34%), Gaps = 35/287 (12%)

Query: 349 DLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSM-GYTVRLLFLDLSSN 407
           D   L + NN+ I  L  +    L  L  L +  N     I         +L  L +S N
Sbjct: 55  DTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKN 112

Query: 408 NFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYM--SMTQLAWLYLNDNQFT-GRLEE 464
           +   E+P    +  V L    +  N    +  PK +   +  +  + +  N       E 
Sbjct: 113 HLV-EIPPNLPSSLVEL---RIHDNRI--RKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166

Query: 465 GLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRN---SLEGDVSVPLSNLQVAR 521
           G  +   L+ L +S   L+  +P        L+ L +  N   ++E +  +  S L    
Sbjct: 167 GAFDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYR-- 221

Query: 522 ILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGN 581
            L +  N++      S +   +L  L L NN L+  +P+ L     L  + L  N  +  
Sbjct: 222 -LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-K 278

Query: 582 IPP-------LINEDSNLRALLLRGNNLQ-GNIP----QQLCHLRKI 616
           +            + +    + L  N +    +     + +     I
Sbjct: 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 81.6 bits (202), Expect = 9e-17
 Identities = 57/292 (19%), Positives = 111/292 (38%), Gaps = 34/292 (11%)

Query: 278 LKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFL 337
             +L+L+  +IS       +    L  + L +N ++            KL+ L++  N L
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHL 114

Query: 338 KGL-LHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSF-EGSIPPSMGY 395
             +  +LP S   L+ L I +N  I  +P      L  +  ++M  N        P    
Sbjct: 115 VEIPPNLPSS---LVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 396 TVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHN---YFGGQIFPKYMSMTQLAWLY 452
            ++L +L +S    +  +PK       +L  +++ HN       +   +    ++L  L 
Sbjct: 171 GLKLNYLRISEAKLT-GIPKDLPE---TLNELHLDHNKIQAIELEDLLR---YSKLYRLG 223

Query: 453 LNDNQFTGRLEEGLL-NAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLE---- 507
           L  NQ    +E G L   P+L  L + NN LS ++P  + +   L V+ +  N++     
Sbjct: 224 LGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV 281

Query: 508 -----GDVSVPLSNLQVARILDISENKL-YGPLEFS-FNHSSSLWHLFLHNN 552
                    V  +       + +  N + Y  ++ + F   +    +   N 
Sbjct: 282 NDFCPVGFGVKRAYYNG---ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 67.0 bits (164), Expect = 5e-12
 Identities = 51/254 (20%), Positives = 86/254 (33%), Gaps = 43/254 (16%)

Query: 388 SIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQ 447
           ++P  +     LL  DL +N+ S                  +  + F G        +  
Sbjct: 47  AVPKEISPDTTLL--DLQNNDIS-----------------ELRKDDFKG--------LQH 79

Query: 448 LAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRN--- 504
           L  L L +N+ +   E+       L  L +S N L  ++P      S+L  L +  N   
Sbjct: 80  LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIP--PNLPSSLVELRIHDNRIR 136

Query: 505 SLEGDVSVPLSNLQVARILDISENKLY-GPLEFSFNHSSSLWHLFLHNNSLNGSIPSALF 563
            +   V   L N+     +++  N L     E        L +L +    L   IP  L 
Sbjct: 137 KVPKGVFSGLRNMNC---IEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLP 192

Query: 564 QSSQLMTLDLRDNEFSGNIPPLI-NEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDIS 622
           ++  L  L L  N+    I        S L  L L  N ++      L  L  +  + + 
Sbjct: 193 ET--LNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249

Query: 623 YNLLDGSIPSCFTN 636
            N L   +P+   +
Sbjct: 250 NNKLS-RVPAGLPD 262

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 67.0 bits (164), Expect = 6e-12
 Identities = 60/300 (20%), Positives = 104/300 (34%), Gaps = 58/300 (19%)

Query: 495 NLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSL 554
           +L V+  S   L    +VP        +LD+  N +    +  F     L+ L L NN +
Sbjct: 34  HLRVVQCSDLGL---KAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 555 NGSIPSALFQS-SQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHL 613
           +  I    F    +L  L +  N     IPP +   S+L  L +  N ++         L
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGL 146

Query: 614 RKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLN 673
           R +  +++  N L+ S            E G                             
Sbjct: 147 RNMNCIEMGGNPLENS----------GFEPG----------------------------- 167

Query: 674 LIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPS-AIGYLQE 732
             F G     LR       +++ +       + E +  L L  N++   I    +    +
Sbjct: 168 -AFDGLKLNYLR-------ISEAKLTGIPKDLPETLNELHLDHNKIQ-AIELEDLLRYSK 218

Query: 733 LHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLS 792
           L+ L L HN +      S S L  +  + L  NKL  ++P  L +L  L +  +  N+++
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 16/130 (12%)

Query: 87  LKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLS 146
             +L  L +G N         L+ L +L  L L+ N L    +    LP+L+ L+V+ L 
Sbjct: 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS---RVPAGLPDLKLLQVVYLH 272

Query: 147 GNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSL--PQCLSNLTY 204
            N            +  +            +      ++L  N +      P     +T 
Sbjct: 273 TN-----------NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD 321

Query: 205 LRVLDLTSNQ 214
              +   + +
Sbjct: 322 RLAIQFGNYK 331

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 92.0 bits (229), Expect = 1e-20
 Identities = 51/233 (21%), Positives = 95/233 (40%), Gaps = 24/233 (10%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDL 145
           +  +    N+   S ++        L S+  +    +++    K ++ +  L N+  L L
Sbjct: 22  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDI----KSVQGIQYLPNVTKLFL 75

Query: 146 SGNGL-----IGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLS 200
           +GN L     + +L      L L  NK +++++ + +LK L  L+L  N +  S    L 
Sbjct: 76  NGNKLTDIKPLANLK-NLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGI--SDINGLV 131

Query: 201 NLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQI 260
           +L  L  L L +N+++    I+V + LT L+ LSL  N       +  LA  ++L+ L +
Sbjct: 132 HLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYL 185

Query: 261 SRLQIET-ENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNL 312
           S+  I        L    L VL L          +          +  +  +L
Sbjct: 186 SKNHISDLRALAGLK--NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 57/285 (20%), Positives = 93/285 (32%), Gaps = 37/285 (12%)

Query: 134 LPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDG 193
                     +L    +              N            L ++ ++  + + +  
Sbjct: 20  DDAFAETIKDNLKKKSV--------TDAVTQNE-----------LNSIDQIIANNSDIK- 59

Query: 194 SLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHS 253
           S+ Q +  L  +  L L  N+L+    I   ANL +L +L L  N  +    LS L +  
Sbjct: 60  SV-QGIQYLPNVTKLFLNGNKLTD---IKPLANLKNLGWLFLDENKVK---DLSSLKDLK 112

Query: 254 RLEVLQISRLQIET-ENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNL 312
           +L+ L +    I        LP  QL+ L L    I  T  + L     L  + L  N +
Sbjct: 113 KLKSLSLEHNGISDINGLVHLP--QLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQI 168

Query: 313 AGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMIL 372
           +   P   L   TKL+ L+L  N +  L  L   K  L  L + +       P N    L
Sbjct: 169 SDIVP---LAGLTKLQNLYLSKNHISDLRALAGLKN-LDVLELFSQE-CLNKPINHQSNL 223

Query: 373 PELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQF 417
                +  +  S       S         +      F+ E+   F
Sbjct: 224 VVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIF 268

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.1 bits (154), Expect = 7e-11
 Identities = 44/184 (23%), Positives = 71/184 (38%), Gaps = 31/184 (16%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDL 145
            LK+LK L++  N  S+  +  L  L  L SL+L  N +      + VL  L  L+ L L
Sbjct: 110 DLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKI----TDITVLSRLTKLDTLSL 163

Query: 146 SGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYL 205
             N +          +  L             L  L  L LS N +  S  + L+ L  L
Sbjct: 164 EDNQI--------SDIVPLAG-----------LTKLQNLYLSKNHI--SDLRALAGLKNL 202

Query: 206 RVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQI 265
            VL+L S +   N PI+  +NL     +  +  +     +  ++++    E   +     
Sbjct: 203 DVLELFSQECL-NKPINHQSNLVVPNTVKNTDGSLV---TPEIISDDGDYEKPNVKWHLP 258

Query: 266 ETEN 269
           E  N
Sbjct: 259 EFTN 262

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 49/281 (17%), Positives = 91/281 (32%), Gaps = 21/281 (7%)

Query: 302 LRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFI 361
               +L   ++              ++ +   N+ +K +  +      +  L ++ N   
Sbjct: 26  TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPN-VTKLFLNGNKLT 81

Query: 362 GMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGC 421
            + P      L  L +L + +N  +  +        +L  L L  N  S ++    L   
Sbjct: 82  DIKPLAN---LKNLGWLFLDENKVK-DLSSLKDLK-KLKSLSLEHNGIS-DIN--GLVHL 133

Query: 422 VSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNM 481
             L  + + +N            +T+L  L L DNQ +      L     L  L +S N 
Sbjct: 134 PQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNH 189

Query: 482 LSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHS 541
           +S      +    NLDVL +             SNL V   +  ++  L  P   S +  
Sbjct: 190 ISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGD 247

Query: 542 SSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNI 582
               ++  H       +    F   Q +T+      F G +
Sbjct: 248 YEKPNVKWHLPEFTNEVS---FIFYQPVTIGKAKARFHGRV 285

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 42/261 (16%), Positives = 104/261 (39%), Gaps = 29/261 (11%)

Query: 372 LPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSH 431
             E +  ++ + S   ++  +      +  +  ++++    +  Q +    ++  + ++ 
Sbjct: 23  FAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SV--QGIQYLPNVTKLFLNG 77

Query: 432 NYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVG 491
           N     I P   ++  L WL+L++N+    L   L +   L  L + +N +S  +   + 
Sbjct: 78  NKLT-DIKP-LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS-DING-LV 131

Query: 492 NFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHN 551
           +   L+ L +  N +  D++  LS L     L + +N++   +       + L +L+L  
Sbjct: 132 HLPQLESLYLGNNKIT-DIT-VLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSK 187

Query: 552 NSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNI----- 606
           N +  S   AL     L  L+L            +N+  N ++ L+  N ++        
Sbjct: 188 NHI--SDLRALAGLKNLDVLELFSQ-------ECLNKPINHQSNLVVPNTVKNTDGSLVT 238

Query: 607 PQQLCHLRKIAIVDISYNLLD 627
           P+ +         ++ ++L +
Sbjct: 239 PEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 46/243 (18%), Positives = 84/243 (34%), Gaps = 26/243 (10%)

Query: 221 ISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET-ENFPWLPRFQLK 279
           I            +L   +             + ++ +  +   I++ +   +LP   + 
Sbjct: 17  IFSDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIKSVQGIQYLP--NVT 71

Query: 280 VLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLK- 338
            L L    ++   P  L    +L ++ L  N +        L++  KL+ L L +N +  
Sbjct: 72  KLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS---LKDLKKLKSLSLEHNGISD 126

Query: 339 --GLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYT 396
             GL+HLP     L  L + NN  I  +       L +L  L +  N     I P  G T
Sbjct: 127 INGLVHLP----QLESLYLGNNK-ITDITVLSR--LTKLDTLSLEDNQIS-DIVPLAGLT 178

Query: 397 VRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDN 456
            +L  L LS N+ S     + L G  +L  + +       +      ++     +   D 
Sbjct: 179 -KLQNLYLSKNHISD---LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

Query: 457 QFT 459
              
Sbjct: 235 SLV 237

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 91.7 bits (228), Expect = 5e-20
 Identities = 51/261 (19%), Positives = 83/261 (31%), Gaps = 34/261 (13%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDL 145
               L+ L +  N  +       +SL SL  L L  N L            L +L  L+L
Sbjct: 74  RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN--LSSSWFKPLSSLTFLNL 131

Query: 146 SGNGLIGSLTMQG--EKLELLNNKCREMNARICE--------LKNLVELNLSWNKLDGSL 195
            GN    +L        L  L            +        L  L EL +  + L    
Sbjct: 132 LGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190

Query: 196 PQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRL 255
           P+ L ++  +  L L   Q    L        +S+E L L   +               L
Sbjct: 191 PKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTD---------------L 234

Query: 256 EVLQISRLQ-IETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAG 314
           +    S L   ET +      F+   + +   ++   +   L     L  ++ S N L  
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRN--VKITDESLF-QVMKLLNQISGLLELEFSRNQLK- 290

Query: 315 TFPTWLLQNNTKLEFLFLFNN 335
           + P  +    T L+ ++L  N
Sbjct: 291 SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 90.9 bits (226), Expect = 1e-19
 Identities = 55/286 (19%), Positives = 98/286 (34%), Gaps = 36/286 (12%)

Query: 112 TSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGL--IGSLTMQGEKLELLNNKCR 169
            ++ SL L  N +         L    NL+ L L+ NG+  I   +              
Sbjct: 52  EAVKSLDLSNNRITY--ISNSDLQRCVNLQALVLTSNGINTIEEDSFSS----------- 98

Query: 170 EMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTS 229
                   L +L  L+LS+N L          L+ L  L+L  N        S+F++LT 
Sbjct: 99  --------LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150

Query: 230 LEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQI---ETENFPWLPRFQLKVLNLRRC 286
           L+ L +   +          A  + LE L+I    +   E ++   +    +  L L   
Sbjct: 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ--NVSHLILHMK 208

Query: 287 NISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWL-------LQNNTKLEFLFLFNNFLKG 339
                +  F+     +  ++L   +L     + L       L        + + +  L  
Sbjct: 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268

Query: 340 LLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSF 385
           ++ L +    LL L  S N  +  +PD     L  L  + +  N +
Sbjct: 269 VMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 76.3 bits (188), Expect = 7e-15
 Identities = 34/171 (19%), Positives = 69/171 (40%), Gaps = 20/171 (11%)

Query: 87  LKQLKILNIGFNSFSESLVP-LLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDL 145
           L +L+IL +G       +       LT L  L ++ ++L       K L +++N+  L L
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS--YEPKSLKSIQNVSHLIL 205

Query: 146 SGNGL--IGSLTMQG----EKLELLNNKCREMN---------ARICELKNLVELNLSWNK 190
                  +  + +      E LEL +      +           + +      + ++   
Sbjct: 206 HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265

Query: 191 LDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ 241
           L   + + L+ ++ L  L+ + NQL  ++P  +F  LTSL+ + L  N + 
Sbjct: 266 L-FQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 73.2 bits (180), Expect = 6e-14
 Identities = 53/272 (19%), Positives = 100/272 (36%), Gaps = 22/272 (8%)

Query: 371 ILPELVYLDMSQNSFEGSIPPSM--GYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMN 428
           +   +  LD+S N     I  S        L  L L+SN  +  + +   +   SL  ++
Sbjct: 50  LTEAVKSLDLSNNRIT-YISNSDLQRCV-NLQALVLTSNGIN-TIEEDSFSSLGSLEHLD 106

Query: 429 VSHNYFGGQIFPKYM--SMTQLAWLYLNDNQFTGRLEEGLLNA-PSLHILDVSNNMLSGQ 485
           +S+NY             ++ L +L L  N +    E  L +    L IL V N     +
Sbjct: 107 LSYNYL--SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK 164

Query: 486 LPH-WVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSL 544
           +        + L+ L +  + L+      L ++Q    L +   +    LE   + +SS+
Sbjct: 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV 224

Query: 545 WHLFLHNNSLNG----SIPSALFQS----SQLMTLDLRDNEFSGNIPPLINEDSNLRALL 596
             L L +  L+      + +    S         + + D      +  L+N+ S L  L 
Sbjct: 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELE 283

Query: 597 LRGNNLQGNIPQQLCH-LRKIAIVDISYNLLD 627
              N L+ ++P  +   L  +  + +  N  D
Sbjct: 284 FSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 50/305 (16%), Positives = 101/305 (33%), Gaps = 48/305 (15%)

Query: 470 PSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRN---SLEGDVSVPLSNLQVARILDIS 526
            ++  LD+SNN ++      +    NL  L+++ N   ++E D    L +L+    LD+S
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH---LDLS 108

Query: 527 ENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS-SQLMTLDLRDNEFSGNIPPL 585
            N L       F   SSL  L L  N       ++LF   ++L  L + + +    I   
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 586 INED-SNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEG 644
                + L  L +  ++LQ   P+ L  ++ ++ + +        +   F          
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIF---------- 217

Query: 645 DPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGG 704
              +       L +      + +++       +                           
Sbjct: 218 --VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK----------------------- 252

Query: 705 VLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRS-FSNLKMIESMDLS 763
                  + ++   L  ++   +  +  L  L  S N L  S+P   F  L  ++ + L 
Sbjct: 253 -KFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLH 309

Query: 764 YNKLR 768
            N   
Sbjct: 310 TNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 9e-05
 Identities = 45/276 (16%), Positives = 89/276 (32%), Gaps = 46/276 (16%)

Query: 511 SVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS-SQLM 569
           S+P    +  + LD+S N++            +L  L L +N +N +I    F S   L 
Sbjct: 45  SIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLE 103

Query: 570 TLDLRDNEFSGNIPPLINED-SNLRALLLRGNNLQGNIPQQ--LCHLRKIAIVDISYNLL 626
            LDL  N  S N+     +  S+L  L L GN  +  + +     HL K+ I+ +     
Sbjct: 104 HLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDT 161

Query: 627 DGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEH--FPAISAYYNSTLNLIFSGEDNREL 684
              I                F G  F   L ++     +       ++  +        L
Sbjct: 162 FTKIQR------------KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV------SHL 203

Query: 685 RQRVEVKFMAKNRYESYKGGV---LEYMTGLDLSSNELTGEIPSAI--------GYLQEL 733
                   +   ++             +  L+L   +L     S +              
Sbjct: 204 I-------LHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256

Query: 734 HALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRG 769
             + ++   L   + +  + +  +  ++ S N+L+ 
Sbjct: 257 RNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 8/87 (9%)

Query: 710 TGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRG 769
             LDLS+N +T    S +     L AL L+ N ++     SFS+L  +E +DLSYN L  
Sbjct: 55  KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS- 113

Query: 770 QIPLE----LSELNYLAIFNVSYNDLS 792
            +       LS L +L   N+  N   
Sbjct: 114 NLSSSWFKPLSSLTFL---NLLGNPYK 137

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 91.2 bits (227), Expect = 2e-19
 Identities = 90/468 (19%), Positives = 150/468 (32%), Gaps = 103/468 (22%)

Query: 87  LKQLKILNIGFNSFS----ESLVPLLTSLTSLTSLFLEGNNLG-VGFKPM--KVLPNLRN 139
           L+Q +++ +     +    + +   L    +L  L L  N LG VG   +   +      
Sbjct: 27  LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 86

Query: 140 LEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCL 199
           ++ L L        LT  G         C  +++ +  L  L EL+LS N L  +  Q L
Sbjct: 87  IQKLSLQNC----CLTGAG---------CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLL 133

Query: 200 S-----NLTYLRVLDLTSNQLS--GNLPI-SVFANLTSLEYLSLSGNNFQGSFSLSVLAN 251
                     L  L L    LS     P+ SV       + L++S N+      + VL  
Sbjct: 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI-NEAGVRVLC- 191

Query: 252 HSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNIS----GTIPSFLQYQYDLRYIDL 307
               + L+ S               QL+ L L  C ++      +   +  +  LR + L
Sbjct: 192 ----QGLKDSPC-------------QLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234

Query: 308 SHNNL----AGTFPTWLLQNNTKLEFLFLFNNFL-----KGLLHLPDSKRDLLHLVISNN 358
             N L           LL  +++L  L+++   +       L  +  +K  L  L ++ N
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294

Query: 359 NF----IGMLPDNFGMILPELVYLDMSQNSFEG----SIPPSMGYTVRLLFLDLSSNNFS 410
                   +L +       +L  L +   SF           +     LL L +S+N   
Sbjct: 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

Query: 411 GELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFT----GRLEEGL 466
                    G   L                     + L  L+L D   +      L   L
Sbjct: 355 DA-------GVRELCQGLGQPG-------------SVLRVLWLADCDVSDSSCSSLAATL 394

Query: 467 LNAPSLHILDVSNN--------MLSGQLPHWVGNFSNLDVLLMSRNSL 506
           L   SL  LD+SNN         L   +         L+ L++     
Sbjct: 395 LANHSLRELDLSNNCLGDAGILQLVESVRQ---PGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 70.8 bits (174), Expect = 8e-13
 Identities = 76/441 (17%), Positives = 140/441 (31%), Gaps = 70/441 (15%)

Query: 228 TSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRF-----QLKVLN 282
             ++ L +       +    +L    + +V+++    +       +         L  LN
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 283 LRRCNISG----TIPSFLQYQY-DLRYIDLSHNNL----AGTFPTWLLQNNTKLEFLFLF 333
           LR   +       +   LQ     ++ + L +  L     G   +  L+    L+ L L 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLS 121

Query: 334 NNFL--KGLLHLPDSKRD----LLHLVISNNNFIGMLPDNFGMIL---PELVYLDMSQNS 384
           +N L   GL  L +   D    L  L +   +      +    +L   P+   L +S N 
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 385 FEGS----IPPSMGY-TVRLLFLDLSSNNFSGELPKQF---LTGCVSLAFMNVSHNYF-- 434
              +    +   +     +L  L L S   + +  +     +    SL  + +  N    
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 435 -GGQIFPKYM--SMTQLAWLYLNDNQFTGR----LEEGLLNAPSLHILDVSNNMLSGQ-- 485
            G       +    ++L  L++ +   T +    L   L    SL  L ++ N L  +  
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301

Query: 486 ------LPHWVGNFSNLDVLLMSRNSLEGD----VSVPLSNLQVARILDISENKL--YGP 533
                 L         L+ L +   S         S  L+  +    L IS N+L   G 
Sbjct: 302 RLLCETLLE---PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358

Query: 534 LEFSF---NHSSSLWHLFLHNNSLN----GSIPSALFQSSQLMTLDLRDNEFSGNIPPLI 586
            E         S L  L+L +  ++     S+ + L  +  L  LDL +N         +
Sbjct: 359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 418

Query: 587 NE-----DSNLRALLLRGNNL 602
            E        L  L+L     
Sbjct: 419 VESVRQPGCLLEQLVLYDIYW 439

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 89.2 bits (221), Expect = 2e-19
 Identities = 46/253 (18%), Positives = 82/253 (32%), Gaps = 21/253 (8%)

Query: 79  ANYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLR 138
            +   + SLK+L +      S        +  ++ L  L LE   +     P  +     
Sbjct: 62  TDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121

Query: 139 NLEVLDLSGNGLIGSLTMQGE----------KLELLNNKCREMNAR-ICELKNLVELNLS 187
           +L +L+L             E           L +        +   +     L  L+LS
Sbjct: 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS 181

Query: 188 WNKLDGSLP----QCLSNLTYLRVLDLTSNQLS--GNLPISVFANLTSLEYLSLSGNNFQ 241
            N   G        C      L+VL L +  +     +  ++ A    L+ L LS N+ +
Sbjct: 182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR 241

Query: 242 GSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYD 301
            +         S+L  L +S   +  +    LP  +L VL+L    +    PS  +    
Sbjct: 242 DAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGLPA-KLSVLDLSYNRLD-RNPSPDELPQ- 297

Query: 302 LRYIDLSHNNLAG 314
           +  + L  N    
Sbjct: 298 VGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 85.7 bits (212), Expect = 3e-18
 Identities = 57/304 (18%), Positives = 100/304 (32%), Gaps = 23/304 (7%)

Query: 198 CLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEV 257
           C  N +  +    ++    G   + ++    SLEYL    +        + +     L+ 
Sbjct: 13  CSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKR 72

Query: 258 LQISRLQIETENFPWLPRF----QLKVLNLRRCNISGTIPSFLQYQY--DLRYIDLSHNN 311
           L +   +I +       R      L+ L L    ++GT P  L      DL  ++L + +
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 312 LAGTFPTWLLQ----NNTKLEFLFLFNNFLKGL-LHLPDSKRDLLHLVISNNNFIG---M 363
            A     WL +        L+ L +                  L  L +S+N  +G   +
Sbjct: 133 WAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 364 LPDNFGMILPELVYLDMSQNSFE---GSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTG 420
           +     +  P L  L +     E   G         V+L  LDLS N+            
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 421 CVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNN 480
              L  +N+S      +  PK +   +L+ L L+ N+         L  P +  L +  N
Sbjct: 252 PSQLNSLNLSFTGL--KQVPKGLP-AKLSVLDLSYNRLDRNPSPDEL--PQVGNLSLKGN 306

Query: 481 MLSG 484
               
Sbjct: 307 PFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 84.9 bits (210), Expect = 4e-18
 Identities = 59/297 (19%), Positives = 86/297 (28%), Gaps = 36/297 (12%)

Query: 320 LLQNNTKLEFLFLFNNFLKGLLHLPDSKR--DLLHLVISNNNFIGMLPDNFGMIL--PEL 375
           L      LE+L    +    L    D  +   L  L +        +      +L    L
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 376 VYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFG 435
             L +      G+ PP +          L+  N S      +L                 
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW----------- 146

Query: 436 GQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHW----VG 491
                       L  L +          E +   P+L  LD+S+N   G+          
Sbjct: 147 --------LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198

Query: 492 NFSNLDVLLMSRN---SLEGDVSVPLSNLQVARILDISENKLYG-PLEFSFNHSSSLWHL 547
            F  L VL +      +  G  S   +     + LD+S N L       S +  S L  L
Sbjct: 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258

Query: 548 FLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQG 604
            L    L   +P  L     L  LDL  N    N  P  +E   +  L L+GN    
Sbjct: 259 NLSFTGLK-QVPKGLPAK--LSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.0 bits (192), Expect = 1e-15
 Identities = 59/308 (19%), Positives = 96/308 (31%), Gaps = 38/308 (12%)

Query: 84  NGSLKQLKILNIGFNSFSESLVPL-LTSLTSLTSLFLEGNNL-GVGFKPMKVLPNLRNLE 141
            G  + L+ L    ++ ++      +    SL  L +    +          +  +  L+
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 142 VLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSN 201
            L L    + G+      +    +            L  L   N+SW   D  L +    
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPD------------LNILNLRNVSWATRDAWLAELQQW 146

Query: 202 L-TYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQI 260
           L   L+VL +       N          +L  L LS N   G   L       +   LQ 
Sbjct: 147 LKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ- 204

Query: 261 SRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWL 320
                            L + N      SG   +    +  L+ +DLSHN+L        
Sbjct: 205 ----------------VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

Query: 321 LQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDM 380
               ++L  L L    LK +     +K  L  L +S N  +   P      LP++  L +
Sbjct: 249 CDWPSQLNSLNLSFTGLKQVPKGLPAK--LSVLDLSYNR-LDRNPSPDE--LPQVGNLSL 303

Query: 381 SQNSFEGS 388
             N F  S
Sbjct: 304 KGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 67.2 bits (164), Expect = 4e-12
 Identities = 56/338 (16%), Positives = 100/338 (29%), Gaps = 53/338 (15%)

Query: 467 LNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDIS 526
            + P        N + +  +  + G  S   +L       +      +      + L + 
Sbjct: 17  FSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVR 76

Query: 527 ENKLYGPLEFS---FNHSSSLWHLFLHNNSLNGSIPSALFQ--SSQLMTLDLRDNEFSGN 581
             ++   + F        S L  L L N  + G+ P  L +     L  L+LR+  ++  
Sbjct: 77  AARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR 136

Query: 582 IPPLIN----EDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNI 637
              L          L+ L +   +      +Q+     ++ +D+S N   G         
Sbjct: 137 DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG------ 190

Query: 638 WPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNR 697
                             L    FP +         L                   A+ +
Sbjct: 191 --------------LISALCPLKFPTLQ-------VLALRNAGMETPSGVCSALAAARVQ 229

Query: 698 YESYKGGVLEYMTGLDLSSNELTGEIPSAI-GYLQELHALNLSHNHLSGSIPRSFSNLKM 756
                   L+    LDLS N L     +    +  +L++LNLS   L        + L  
Sbjct: 230 --------LQG---LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL-- 276

Query: 757 IESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGP 794
              +DLSYN+L    P    EL  +   ++  N     
Sbjct: 277 -SVLDLSYNRLDR-NPSPD-ELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 32/183 (17%), Positives = 57/183 (31%), Gaps = 16/183 (8%)

Query: 466 LLNAPSLHILDVSNNMLSGQLPHW---VGNFSNLDVLLMSRNSLEGDVSVPLSNLQVA-- 520
           ++ + SL  L V    +  ++      V   S L  L +    + G    PL        
Sbjct: 64  IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL 123

Query: 521 RILDISENKLYGPLEFSFNHSS----SLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDN 576
            IL++          +           L  L +            +     L TLDL DN
Sbjct: 124 NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183

Query: 577 EFSGNIPPLI----NEDSNLRALLLRGNNLQ---GNIPQQLCHLRKIAIVDISYNLLDGS 629
              G    +      +   L+ L LR   ++   G          ++  +D+S+N L  +
Sbjct: 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243

Query: 630 IPS 632
             +
Sbjct: 244 AGA 246

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 48/280 (17%), Positives = 79/280 (28%), Gaps = 58/280 (20%)

Query: 533 PLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINED--- 589
            +E      S  + L   +   +    + + +S  L  L +R       I          
Sbjct: 35  DVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGI 94

Query: 590 SNLRALLLRGNNLQGNIPQQLCHLRKIAIVDIS-YNLLDGSIPSCFTNIWPWMEEGDPFN 648
           S L+ L L    + G  P  L       +  ++  N+   +  +    +  W++      
Sbjct: 95  SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP----- 149

Query: 649 GFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEY 708
                          +S     +LN                               V   
Sbjct: 150 -----------GLKVLSIAQAHSLNFSCEQ------------------------VRVFPA 174

Query: 709 MTGLDLSSNELTGEI-------PSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMD 761
           ++ LDLS N   GE        P     LQ L   N      SG      +    ++ +D
Sbjct: 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234

Query: 762 LSYNKLRGQIPLE----LSELNYLAIFNVSYNDLSGPTPN 797
           LS+N LR           S+LN L   N+S+  L      
Sbjct: 235 LSHNSLRDAAGAPSCDWPSQLNSL---NLSFTGLKQVPKG 271

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 89.6 bits (222), Expect = 1e-18
 Identities = 59/325 (18%), Positives = 95/325 (29%), Gaps = 64/325 (19%)

Query: 130 PMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWN 189
                      E   L G              E  N     +  + C +    EL L+  
Sbjct: 26  YADYFSAWDKWEKQALPG--------------ENRNEAVSLL--KECLINQFSELQLNRL 69

Query: 190 KLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVL 249
            L  SLP  L     + VL++T N L  +LP        SLEYL    N        ++ 
Sbjct: 70  NLS-SLPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLS-----TLP 116

Query: 250 ANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSH 309
              + L+ L +   Q+     P LP   L+ +N     ++  +P        L  + + +
Sbjct: 117 ELPASLKHLDVDNNQLTM--LPELPA-LLEYINADNNQLT-MLPELPTS---LEVLSVRN 169

Query: 310 NNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFG 369
           N L    P         LE L +  N L+    LP       H                 
Sbjct: 170 NQL-TFLPELP----ESLEALDVSTNLLE---SLPAVPVRNHHS---------------- 205

Query: 370 MILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNV 429
                 ++    +N     IP ++        + L  N  S    ++ L+   +    + 
Sbjct: 206 --EETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHG 261

Query: 430 SHNYFGGQIFPKYMSMTQLAWLYLN 454
              YF      +      LA     
Sbjct: 262 PRIYFSMSDGQQNTLHRPLADAVTA 286

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 84.6 bits (209), Expect = 5e-17
 Identities = 74/450 (16%), Positives = 137/450 (30%), Gaps = 77/450 (17%)

Query: 182 VELNLSWNKLDG---SLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGN 238
           +  N  +N + G                +     N+    L       +     L L+  
Sbjct: 13  LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE---CLINQFSELQLNRL 69

Query: 239 NFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRF--QLKVLNLRRCNISGTIPSFL 296
           N   S   ++      + VL+I++  + +     LP     L+ L+     +S T+P   
Sbjct: 70  NLS-SLPDNLPPQ---ITVLEITQNALIS-----LPELPASLEYLDACDNRLS-TLPELP 119

Query: 297 QYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVIS 356
                L+++D+ +N L     T L +    LE++   NN L     LP+    L  L + 
Sbjct: 120 A---SLKHLDVDNNQL-----TMLPELPALLEYINADNNQLT---MLPELPTSLEVLSVR 168

Query: 357 NNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRL----LFLDLSSNNFSGE 412
           NN  +  LP+    +   L  LD+S N  E S+P             +F     N  +  
Sbjct: 169 NNQ-LTFLPE----LPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-H 221

Query: 413 LPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSL 472
           +P+  L                         S+     + L DN  + R+ E L    + 
Sbjct: 222 IPENIL-------------------------SLDPTCTIILEDNPLSSRIRESLSQQTAQ 256

Query: 473 HILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYG 532
                     S        N  +  +          +    +S +  A   +   N    
Sbjct: 257 PDYHGPRIYFSMSDGQQ--NTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSA 314

Query: 533 PLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINED--- 589
            L+   +  S       + +     + + L + S    L  +    + +      +    
Sbjct: 315 FLDRLSDTVS-----ARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVAL 369

Query: 590 --SNLRALLLRGNNLQGNIPQQLCHLRKIA 617
             +NLR  LL     +G        L  + 
Sbjct: 370 TWNNLRKTLLVHQASEGLFDNDTGALLSLG 399

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.1 bits (205), Expect = 1e-16
 Identities = 58/294 (19%), Positives = 94/294 (31%), Gaps = 35/294 (11%)

Query: 356 SNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIP-PSMGYTVRLLFLDLSSNNFSGELP 414
           S  N I     ++     +     +   +   ++         +   L L+  N S  LP
Sbjct: 17  SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLP 75

Query: 415 KQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHI 474
                    L    ++ N       P+      L +L   DN+ +  L E      SL  
Sbjct: 76  DNLPPQITVL---EITQNAL--ISLPE--LPASLEYLDACDNRLS-TLPELP---ASLKH 124

Query: 475 LDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVP--LSNLQVARILDISENKLYG 532
           LDV NN L+  LP        L+ +    N L     +P   ++L+V   L +  N+L  
Sbjct: 125 LDVDNNQLT-MLPELPAL---LEYINADNNQLT---MLPELPTSLEV---LSVRNNQLTF 174

Query: 533 PLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMT----LDLRDNEFSGNIPPLINE 588
             E       SL  L +  N L  S+P+   ++            R+N  + +IP  I  
Sbjct: 175 LPELP----ESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILS 228

Query: 589 DSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWME 642
                 ++L  N L   I + L                  S     T   P  +
Sbjct: 229 LDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLAD 282

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.5 bits (188), Expect = 1e-14
 Identities = 40/223 (17%), Positives = 72/223 (32%), Gaps = 34/223 (15%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNL-RNLEVLD 144
               L+ L+   N  S     L     SL  L ++ N L        +LP L   LE ++
Sbjct: 98  LPASLEYLDACDNRLST----LPELPASLKHLDVDNNQL-------TMLPELPALLEYIN 146

Query: 145 LSGNGL------IGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQC 198
              N L        SL    E L + NN+   +       ++L  L++S N L+ SLP  
Sbjct: 147 ADNNQLTMLPELPTSL----EVLSVRNNQLTFLPE---LPESLEALDVSTNLLE-SLPAV 198

Query: 199 LSNLTYLR----VLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSR 254
                +            N+++ ++P ++  +L     + L  N    S     L+  + 
Sbjct: 199 PVRNHHSEETEIFFRCRENRIT-HIPENIL-SLDPTCTIILEDNPLS-SRIRESLSQQTA 255

Query: 255 LEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQ 297
                  R+     +          + +           S + 
Sbjct: 256 QPDYHGPRIYFSMSDGQQ-NTLHRPLADAVTAWFPENKQSDVS 297

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.5 bits (123), Expect = 9e-07
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 10/90 (11%)

Query: 712 LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESM----DLSYNKL 767
           L + +N+LT  +P     L+ L   ++S N L  S+P         E          N++
Sbjct: 165 LSVRNNQLT-FLPELPESLEAL---DVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI 219

Query: 768 RGQIPLELSELNYLAIFNVSYNDLSGPTPN 797
              IP  +  L+      +  N LS     
Sbjct: 220 T-HIPENILSLDPTCTIILEDNPLSSRIRE 248

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 12/81 (14%)

Query: 712 LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQI 771
           L+++ N L   +P     L+    L+   N LS ++P   ++LK    +D+  N+L   +
Sbjct: 85  LEITQNALI-SLPELPASLEY---LDACDNRLS-TLPELPASLK---HLDVDNNQLT-ML 135

Query: 772 PLELSELNYLAIFNVSYNDLS 792
           P   + L Y+   N   N L+
Sbjct: 136 PELPALLEYI---NADNNQLT 153

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.0 bits (119), Expect = 3e-06
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 12/87 (13%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765
              +  LD+ +N+LT  +P     L+    +N  +N L+  +P   ++L   E + +  N
Sbjct: 119 PASLKHLDVDNNQLT-MLPELPALLEY---INADNNQLT-MLPELPTSL---EVLSVRNN 170

Query: 766 KLRGQIPLELSELNYLAIFNVSYNDLS 792
           +L   +P     L  L   +VS N L 
Sbjct: 171 QLT-FLPELPESLEAL---DVSTNLLE 193

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.4 bits (115), Expect = 9e-06
 Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 6/112 (5%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQEL----HALNLSHNHLSGSIPRSFSNLKMIESMD 761
            E +  LD+S+N L   +P+                   N ++  IP +  +L    ++ 
Sbjct: 179 PESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTII 236

Query: 762 LSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNL 813
           L  N L  +I   LS+      ++      S                     
Sbjct: 237 LEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWF 288

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.0 bits (106), Expect = 1e-04
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 9/87 (10%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765
            E       + NE    +   +  + +   L L+  +LS S+P +      I  ++++ N
Sbjct: 36  WEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLS-SLPDNL--PPQITVLEITQN 90

Query: 766 KLRGQIPLELSELNYLAIFNVSYNDLS 792
            L   +P   + L YL   +   N LS
Sbjct: 91  ALI-SLPELPASLEYL---DACDNRLS 113

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 83.9 bits (208), Expect = 1e-18
 Identities = 31/186 (16%), Positives = 67/186 (36%), Gaps = 19/186 (10%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDL 145
           + K      +G +S +         + SLT + L   N+      +  +    N++ L +
Sbjct: 21  TFKAYLNGLLGQSSTAN---ITEAQMNSLTYITLANINV----TDLTGIEYAHNIKDLTI 73

Query: 146 SGNGL-----IGSLTMQGEKLELLNNKCREMNAR-ICELKNLVELNLSWNKLDGSLPQCL 199
           +         I  L+   E+L ++           +  L +L  L++S +  D S+   +
Sbjct: 74  NNIHATNYNPISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 200 SNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQ 259
           + L  +  +DL+ N    +  I     L  L+ L++  +          + +  +L  L 
Sbjct: 133 NTLPKVNSIDLSYNGAITD--IMPLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLY 187

Query: 260 ISRLQI 265
                I
Sbjct: 188 AFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.1 bits (180), Expect = 6e-15
 Identities = 26/184 (14%), Positives = 68/184 (36%), Gaps = 13/184 (7%)

Query: 177 ELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLS 236
             K  +   L  +          + +  L  + L +  ++    ++      +++ L+++
Sbjct: 21  TFKAYLNGLLGQSSTANITE---AQMNSLTYITLANINVTD---LTGIEYAHNIKDLTIN 74

Query: 237 GNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRF-QLKVLNLRRCNISGTIPSF 295
             +     + + ++  S LE L+I    + ++  P L     L +L++       +I + 
Sbjct: 75  NIHAT---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

Query: 296 LQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVI 355
           +     +  IDLS+N          L+   +L+ L +  + +     + D  + L  L  
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYRGIEDFPK-LNQLYA 188

Query: 356 SNNN 359
            +  
Sbjct: 189 FSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 22/133 (16%)

Query: 85  GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLD 144
             L  L+ L I     +   +P L+ LTSLT L +  +        +  +  L  +  +D
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD--SILTKINTLPKVNSID 142

Query: 145 LSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTY 204
           LS NG I  +                    +  L  L  LN+ ++ +       + +   
Sbjct: 143 LSYNGAITDIMP------------------LKTLPELKSLNIQFDGVHDYRG--IEDFPK 182

Query: 205 LRVLDLTSNQLSG 217
           L  L   S  + G
Sbjct: 183 LNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 22/119 (18%)

Query: 73  KCNVTTANYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMK 132
             +VT+    N   L  L +L+I  ++  +S++  + +L  + S+ L  N       P  
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-- 154

Query: 133 VLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKL 191
            L  L  L+ L++  +G+             + +              L +L      +
Sbjct: 155 -LKTLPELKSLNIQFDGV--------HDYRGIED-----------FPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query: 710 TGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRG 769
             L +   ++T +    +  L  L  L++SH+    SI    + L  + S+DLSYN    
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 770 QIPLELSELNYLAIFNVSYNDLS 792
            I   L  L  L   N+ ++ + 
Sbjct: 151 DIM-PLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 26/160 (16%), Positives = 62/160 (38%), Gaps = 13/160 (8%)

Query: 468 NAPSLHILDVSNN---MLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILD 524
              SL  + ++N     L+G     +    N+  L ++      + + P+S L     L 
Sbjct: 42  QMNSLTYITLANINVTDLTG-----IEYAHNIKDLTINNIHAT-NYN-PISGLSNLERLR 94

Query: 525 ISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPP 584
           I    +      + +  +SL  L + +++ + SI + +    ++ ++DL  N    +I P
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP 154

Query: 585 LINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYN 624
           L      L++L ++ + +       +    K+  +     
Sbjct: 155 LKT-LPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 22/115 (19%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 444 SMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSR 503
            ++ L  L +     T      L    SL +LD+S++     +   +     ++ + +S 
Sbjct: 86  GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145

Query: 504 NSLEGDVSVPLSNLQVARILDISENKL--YGPLEFSFNHSSSLWHLFLHNNSLNG 556
           N    D+  PL  L   + L+I  + +  Y  +E        L  L+  + ++ G
Sbjct: 146 NGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIE----DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 706 LEYMTGL---DLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDL 762
           +EY   +    +++   T    + I  L  L  L +    ++     + S L  +  +D+
Sbjct: 62  IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 763 SYNKLRGQIPLELSELNYLAIFNVSYN 789
           S++     I  +++ L  +   ++SYN
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYN 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765
           L  +T LD+S +     I + I  L ++++++LS+N     I      L  ++S+++ ++
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD 169

Query: 766 KLRGQIPLE-LSELNYLAIFN 785
            +     +E   +LN L  F+
Sbjct: 170 GVHDYRGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 16/87 (18%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765
           +  +T + L++  +T ++ + I Y   +  L +++ H +   P   S L  +E + +   
Sbjct: 43  MNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK 98

Query: 766 KLRGQIPLELSELNYLAIFNVSYNDLS 792
            +       LS L  L + ++S++   
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHD 125

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 85.3 bits (211), Expect = 6e-18
 Identities = 44/237 (18%), Positives = 76/237 (32%), Gaps = 18/237 (7%)

Query: 179 KNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGN 238
           +N +EL     KL        S    L  ++++ N +   +   VF+NL  L  + +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 239 NFQGSFSLSVLANHSRLEVLQISRLQIET-ENFPWLPRFQLKVLNLRRCNISGTIP--SF 295
           N     +     N   L+ L IS   I+   +   +   Q  +L+++      TI   SF
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 296 LQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGL-----LHLPDSKRDL 350
           +   ++   + L+ N +               E     NN L+ L               
Sbjct: 150 VGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS----GP 204

Query: 351 LHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSN 407
           + L IS    I  LP      L +L             +P        L+   L+  
Sbjct: 205 VILDISRTR-IHSLPSYGLENLKKLRARSTYNLK---KLPTLEKLV-ALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 76.0 bits (187), Expect = 7e-15
 Identities = 59/365 (16%), Positives = 109/365 (29%), Gaps = 68/365 (18%)

Query: 183 ELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQG 242
                 +K+   +P  L        L     +L   +    F+    LE + +S N+   
Sbjct: 13  VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 243 SFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDL 302
                V +N  +L                                               
Sbjct: 69  VIEADVFSNLPKL----------------------------------------------- 81

Query: 303 RYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPD----SKRDLLHLVISNN 358
             I +   N          QN   L++L + N    G+ HLPD         + L I +N
Sbjct: 82  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNT---GIKHLPDVHKIHSLQKVLLDIQDN 138

Query: 359 NFIGMLPDN-FGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQF 417
             I  +  N F  +  E V L +++N  +  I  S     +L  L+LS NN   ELP   
Sbjct: 139 INIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDV 197

Query: 418 LTGCVSLAFMNVSHNYFGGQIFPKYM--SMTQLAWLYLNDNQFTGRLEEGLLNAPSLHIL 475
             G      +++S         P Y   ++ +L      + +    LE       +L   
Sbjct: 198 FHGASGPVILDISRTRI--HSLPSYGLENLKKLRARSTYNLKKLPTLE----KLVALMEA 251

Query: 476 DVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLE 535
            ++         +W    S L  +       +    +  +  Q + + + +E+      +
Sbjct: 252 SLTYPSHCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDNESSYSRGFD 311

Query: 536 FSFNH 540
            ++  
Sbjct: 312 MTYTE 316

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 73.7 bits (181), Expect = 4e-14
 Identities = 48/275 (17%), Positives = 85/275 (30%), Gaps = 49/275 (17%)

Query: 112 TSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREM 171
            +   L      L V            +LE +++S N ++  +               E 
Sbjct: 30  RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVI---------------EA 72

Query: 172 NARICELKNLVELNLS-WNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSL 230
           +     L  L E+ +   N L    P+   NL  L+ L +++  +  +LP     +    
Sbjct: 73  DV-FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQK 130

Query: 231 EYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISG 290
             L +  N                     I    IE  +F  L  F+  +L L +  I  
Sbjct: 131 VLLDIQDNI-------------------NIHT--IERNSFVGLS-FESVILWLNKNGIQ- 167

Query: 291 TIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSK-RD 349
            I +       L  ++LS NN     P  +    +    L +       +  LP     +
Sbjct: 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT---RIHSLPSYGLEN 224

Query: 350 LLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNS 384
           L  L   +   +  LP      L  L+   ++  S
Sbjct: 225 LKKLRARSTYNLKKLPTLEK--LVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 36/189 (19%), Positives = 64/189 (33%), Gaps = 19/189 (10%)

Query: 82  NNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLE 141
           +N   L +++I     N+          +L +L  L +    +     P     +     
Sbjct: 76  SNLPKLHEIRIEK--ANNLLYINPEAFQNLPNLQYLLISNTGIKH--LPDVHKIHSLQKV 131

Query: 142 VLDLSGNGLIGS--------LTMQGEKLELLNNKCREMNARICELKNLVELNLS-WNKLD 192
           +LD+  N  I +        L+ +   L L  N  +E++        L ELNLS  N L+
Sbjct: 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE 191

Query: 193 GSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANH 252
                     +   +LD++  ++  +LP     NL  L   S           L  L   
Sbjct: 192 ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK-----KLPTLEKL 245

Query: 253 SRLEVLQIS 261
             L    ++
Sbjct: 246 VALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.5 bits (165), Expect = 4e-12
 Identities = 38/190 (20%), Positives = 62/190 (32%), Gaps = 13/190 (6%)

Query: 451 LYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWV-GNFSNLDVLLMSRN----S 505
           L     +     +        L  +++S N +   +   V  N   L  + + +      
Sbjct: 35  LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94

Query: 506 LEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQ- 564
           +  +    L NLQ    L IS   +    +    HS     L + +N    +I    F  
Sbjct: 95  INPEAFQNLPNLQ---YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151

Query: 565 -SSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQ-LCHLRKIAIVDIS 622
            S + + L L  N     I       + L  L L  NN    +P           I+DIS
Sbjct: 152 LSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210

Query: 623 YNLLDGSIPS 632
              +  S+PS
Sbjct: 211 RTRIH-SLPS 219

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 36/271 (13%), Positives = 71/271 (26%), Gaps = 48/271 (17%)

Query: 90  LKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNG 149
              L               +    L  + +  N++ +      V  NL  L  + +    
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV-LEVIEADVFSNLPKLHEIRIEK-- 88

Query: 150 LIGSLTMQGEKLELLNNKCREMNARICE-LKNLVELNLSWNKLDGSLPQCLSNLTYLRVL 208
                           N    +N    + L NL  L +S   +         +     +L
Sbjct: 89  ---------------ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 133

Query: 209 DLTSNQLSGNLPISVFANLTS-LEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET 267
           D+  N     +  + F  L+     L L+ N                     I  +    
Sbjct: 134 DIQDNINIHTIERNSFVGLSFESVILWLNKN--------------------GIQEIHNSA 173

Query: 268 ENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKL 327
            N   L     ++      N+                +D+S   +  + P++ L+N  KL
Sbjct: 174 FNGTQL----DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKL 228

Query: 328 EFLFLFNNFLKGLLHLPDSKRDLLHLVISNN 358
                +N      L   +    L+   ++  
Sbjct: 229 RARSTYNLK---KLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 43/251 (17%), Positives = 84/251 (33%), Gaps = 33/251 (13%)

Query: 521 RILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS-SQLMTLDLRDNEFS 579
             L     KL    + +F+    L  + +  N +   I + +F +  +L  + +      
Sbjct: 33  IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92

Query: 580 GNIPPLINED-SNLRALLLRGNNLQGNIPQQL-CHLRKIAIVDISYNLLDGSIPSCFTNI 637
             I P   ++  NL+ LL+    ++ ++P     H  +  ++DI  N+   +I       
Sbjct: 93  LYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIER----- 146

Query: 638 WPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNR 697
                  + F G  F   ++  +   I        N  F+G    EL           N 
Sbjct: 147 -------NSFVGLSFESVILWLNKNGIQ----EIHNSAFNGTQLDELN------LSDNNN 189

Query: 698 YESYKGGV---LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNL 754
            E     V         LD+S   +       +  L++L A +  +      +P +   L
Sbjct: 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP-TLEKL 245

Query: 755 KMIESMDLSYN 765
             +    L+Y 
Sbjct: 246 VALMEASLTYP 256

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 84.8 bits (210), Expect = 1e-17
 Identities = 55/319 (17%), Positives = 108/319 (33%), Gaps = 57/319 (17%)

Query: 90  LKILNIGFNSFS----ESLVPLLTSLTSLTSLFLEGNNLGV-GFKPM-KVLPNLRNLEVL 143
           ++  ++  ++ +    +S+  +L    S+  + L GN +G    + + + + + ++LE+ 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 144 DLSGN--GLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKL--DG--SLPQ 197
           + S    G +     +           R +   + +   L  + LS N         L  
Sbjct: 66  EFSDIFTGRVKDEIPEA---------LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID 116

Query: 198 CLSNLTYLRVLDLTSNQ------------LSGNLPISVFANLTSLEYLSLSGNNFQ--GS 243
            LS  T L  L L +N             L          N   L  +    N  +    
Sbjct: 117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176

Query: 244 FSLS-VLANHSRLEVLQISRLQIETENFPWL------PRFQLKVLNLRRCNISGT----I 292
              +    +H  L  +++ +  I  E    L         +LKVL+L+    +      +
Sbjct: 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236

Query: 293 PSFLQYQYDLRYIDLSHNNL----AGTFPTWLLQN-NTKLEFLFLFNNFL--KGLLHLPD 345
              L+   +LR + L+   L    A        +  N  L+ L L  N +    +  L  
Sbjct: 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 296

Query: 346 SKRD----LLHLVISNNNF 360
              +    LL L ++ N F
Sbjct: 297 VIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 44/254 (17%), Positives = 80/254 (31%), Gaps = 57/254 (22%)

Query: 86  SLKQLKILNIGFNSFS----ESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLE 141
              +L  + +  N+F     E L+  L+  T L  L+L  N LG                
Sbjct: 92  KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG---------------- 135

Query: 142 VLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDG----SLPQ 197
               +G  +  +L       +  N               L  +    N+L+        +
Sbjct: 136 --PQAGAKIARALQELAVNKKAKNA------------PPLRSIICGRNRLENGSMKEWAK 181

Query: 198 CLSNLTYLRVLDLTSNQLS----GNLPISVFANLTSLEYLSLSGNNF--QGSFSLS-VLA 250
              +   L  + +  N +      +L +   A    L+ L L  N F   GS +L+  L 
Sbjct: 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241

Query: 251 NHSRLEVLQISRLQIET-------ENFPWLPRFQLKVLNLRRCNISGT-----IPSFLQY 298
           +   L  L ++   +         + F  L    L+ L L+   I             + 
Sbjct: 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 301

Query: 299 QYDLRYIDLSHNNL 312
             DL +++L+ N  
Sbjct: 302 MPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 67/410 (16%), Positives = 111/410 (27%), Gaps = 123/410 (30%)

Query: 199 LSNLTYLRVLDLTSNQLS--GNLPI-SVFANLTSLEYLSLSGNNF--QGSFSLS-VLANH 252
           ++  + +    L  + ++      + +V     S++ + LSGN    + +  LS  +A+ 
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 253 SRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNL 312
             LE+ + S +             +L +  L +C               L  + LS N  
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK-------------LHTVRLSDNAF 106

Query: 313 AGTFPTWL---LQNNTKLEFLFLFNNFL--KGLLHLPDSKRDLLHLVISNNNFIGMLPDN 367
             T    L   L  +T LE L+L NN L  +    +  + ++L     + N         
Sbjct: 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA-------- 158

Query: 368 FGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFM 427
                                          L  +    N                 A  
Sbjct: 159 -----------------------------PPLRSIICGRNRLENG-------SMKEWAKT 182

Query: 428 NVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGR-----LEEGLLNAPSLHILDVSNNML 482
                         + S   L  + +  N          L EGL     L +LD+ +N  
Sbjct: 183 --------------FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

Query: 483 SGQ--------LPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPL 534
           +          L  W     NL  L ++   L            V       EN      
Sbjct: 229 THLGSSALAIALKSW----PNLRELGLNDCLL-SARGA----AAVVDAFSKLENI----- 274

Query: 535 EFSFNHSSSLWHLFLHNNSLNGSIPSALFQS-----SQLMTLDLRDNEFS 579
                    L  L L  N +       L          L+ L+L  N FS
Sbjct: 275 --------GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 30/168 (17%), Positives = 53/168 (31%), Gaps = 31/168 (18%)

Query: 79  ANYNNNGSLKQLKILNIGFNSFSE----SLVPLLTSLTSLTSLFLEGNNL---GVGFKPM 131
           A      +   L+ +  G N               S   L ++ +  N +   G+    +
Sbjct: 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL 209

Query: 132 KVLPNLRNLEVLDLSGNGLIGSLTMQG-----------EKLELLNNKCREMNA------- 173
           + L   + L+VLDL  N     L                +L L +       A       
Sbjct: 210 EGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268

Query: 174 RICELKNLVELNLSWNKLDG----SLPQCL-SNLTYLRVLDLTSNQLS 216
              E   L  L L +N+++     +L   +   +  L  L+L  N+ S
Sbjct: 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 43/212 (20%), Positives = 84/212 (39%), Gaps = 25/212 (11%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDL 145
            L      N+G  S ++  +     L+ + +   + +N+    + +  +    NL+ L L
Sbjct: 17  GLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNI----QSLAGMQFFTNLKELHL 70

Query: 146 SGNGL-----IGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLS 200
           S N +     +  LT + E+L +  N+ + +N        L  L L  N+L       L 
Sbjct: 71  SHNQISDLSPLKDLT-KLEELSVNRNRLKNLNG--IPSACLSRLFLDNNEL--RDTDSLI 125

Query: 201 NLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQI 260
           +L  L +L + +N+L     I +   L+ LE L L GN      +   L    ++  + +
Sbjct: 126 HLKNLEILSIRNNKLKS---IVMLGFLSKLEVLDLHGNEIT---NTGGLTRLKKVNWIDL 179

Query: 261 SRLQIETENFPWLPRFQLKVLNLRRCNISGTI 292
           +  +   E   + P   L + N  + +  G  
Sbjct: 180 TGQKCVNEPVKYQPE--LYITNTVK-DPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 40/229 (17%), Positives = 79/229 (34%), Gaps = 36/229 (15%)

Query: 134 LPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDG 193
            P L N    +L    +          L                L  +   N   + +  
Sbjct: 15  DPGLANAVKQNLGKQSV--------TDLVSQKE-----------LSGVQNFNGDNSNI-- 53

Query: 194 SLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHS 253
                +   T L+ L L+ NQ+S    +S   +LT LE LS++ N  +   +L+ + +  
Sbjct: 54  QSLAGMQFFTNLKELHLSHNQISD---LSPLKDLTKLEELSVNRNRLK---NLNGIPSAC 107

Query: 254 RLEVLQISRLQIET-ENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNL 312
            L  L +   ++   ++   L    L++L++R   +  +I   L +   L  +DL  N +
Sbjct: 108 -LSRLFLDNNELRDTDSLIHLK--NLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEI 162

Query: 313 AGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFI 361
             T     L    K+ ++ L              +  + + V   +   
Sbjct: 163 TNTGG---LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.3 bits (144), Expect = 9e-10
 Identities = 35/187 (18%), Positives = 67/187 (35%), Gaps = 21/187 (11%)

Query: 199 LSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVL 258
              L      +L    ++    +     L+ ++  +   +N Q   SL+ +   + L+ L
Sbjct: 15  DPGLANAVKQNLGKQSVTD---LVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKEL 68

Query: 259 QISRLQIET-ENFPWLPRFQLKVLNLRRCNISGTIP-SFLQYQYDLRYIDLSHNNLAGTF 316
            +S  QI        L   +L+ L++ R  +              L  + L +N L  T 
Sbjct: 69  HLSHNQISDLSPLKDLT--KLEELSVNRNRLKNLNGIPSAC----LSRLFLDNNELRDTD 122

Query: 317 PTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELV 376
               L +   LE L + NN LK ++ L      L  L +  N             L ++ 
Sbjct: 123 S---LIHLKNLEILSIRNNKLKSIVML-GFLSKLEVLDLHGNEITNTGGLTR---LKKVN 175

Query: 377 YLDMSQN 383
           ++D++  
Sbjct: 176 WIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 44/225 (19%), Positives = 77/225 (34%), Gaps = 22/225 (9%)

Query: 221 ISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET-ENFPWLPRFQLK 279
           +     L +    +L   +      L      S ++        I++     +     LK
Sbjct: 12  VFPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQSLAGMQFFT--NLK 66

Query: 280 VLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKG 339
            L+L    IS  + S L+    L  + ++ N L           +  L  LFL NN L+ 
Sbjct: 67  ELHLSHNQIS-DL-SPLKDLTKLEELSVNRNRLKNLNGI----PSACLSRLFLDNNELRD 120

Query: 340 LLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRL 399
              L    ++L  L I NN  +  +       L +L  LD+  N    +         ++
Sbjct: 121 TDSL-IHLKNLEILSIRNNK-LKSIVMLGF--LSKLEVLDLHGNEIT-NTGGLTRLK-KV 174

Query: 400 LFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMS 444
            ++DL+        P ++      L   N   +  G  I P Y+S
Sbjct: 175 NWIDLTGQKCV-NEPVKYQP---ELYITNTVKDPDGRWISPYYIS 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 33/245 (13%), Positives = 79/245 (32%), Gaps = 34/245 (13%)

Query: 302 LRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFI 361
               +L   ++         +  + ++     N+ ++ L  +     +L  L +S+N   
Sbjct: 21  AVKQNLGKQSVTDLVS---QKELSGVQNFNGDNSNIQSLAGM-QFFTNLKELHLSHNQIS 76

Query: 362 GMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGC 421
            +        L +L  L +++N  + ++         L  L L +N          L   
Sbjct: 77  DL--SPLKD-LTKLEELSVNRNRLK-NLNGIPSAC--LSRLFLDNNELRDTDS---LIHL 127

Query: 422 VSLAFMNVSHNYFGGQI--FPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSN 479
            +L  +++ +N    ++        +++L  L L+ N+ T     GL     ++ +D++ 
Sbjct: 128 KNLEILSIRNN----KLKSIVMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTG 181

Query: 480 NMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFN 539
                +    V     L +    ++  +G    P           IS    Y      + 
Sbjct: 182 QKCVNEP---VKYQPELYITNTVKD-PDGRWISPY---------YISNGGSYVDGCVLWE 228

Query: 540 HSSSL 544
                
Sbjct: 229 LPVYT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 81.2 bits (201), Expect = 5e-17
 Identities = 50/230 (21%), Positives = 87/230 (37%), Gaps = 29/230 (12%)

Query: 112 TSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREM 171
            S  +L L  N L           +   L+VLDLS   +                  + +
Sbjct: 28  FSTKNLDLSFNPLRH--LGSYSFFSFPELQVLDLSRCEI------------------QTI 67

Query: 172 NARICE-LKNLVELNLSWNKLDGSLPQ-CLSNLTYLRVLDLTSNQLSGNLPISVFANLTS 229
                + L +L  L L+ N +  SL     S L+ L+ L      L+ +L      +L +
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKT 125

Query: 230 LEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET---ENFPWLPRFQLKVLNLR-R 285
           L+ L+++ N  Q        +N + LE L +S  +I++    +   L +  L  L+L   
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 286 CNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNN 335
            N    I      +  L+ + L  N L  + P  +    T L+ ++L  N
Sbjct: 186 LNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 51/259 (19%), Positives = 90/259 (34%), Gaps = 59/259 (22%)

Query: 180 NLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNN 239
           +   L+LS+N L         +   L+VLDL+  ++   +    + +L+ L  L L+GN 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN- 86

Query: 240 FQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFL-QY 298
                               I  L +    F  L    L+ L     N++ ++ +F   +
Sbjct: 87  -------------------PIQSLALGA--FSGLS--SLQKLVAVETNLA-SLENFPIGH 122

Query: 299 QYDLRYIDLSHNNL-----AGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHL 353
              L+ ++++HN +        F      N T LE L L +N ++               
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYF-----SNLTNLEHLDLSSNKIQ--------------- 162

Query: 354 VISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGEL 413
            I   +           +    + LD+S N     I P     +RL  L L +N     +
Sbjct: 163 SIYCTDL-----RVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SV 215

Query: 414 PKQFLTGCVSLAFMNVSHN 432
           P        SL  + +  N
Sbjct: 216 PDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 42/193 (21%), Positives = 82/193 (42%), Gaps = 14/193 (7%)

Query: 444 SMTQLAWLYLNDNQFTGRLEEGLL-NAPSLHILDVSNNMLSGQLPHWV-GNFSNLDVLLM 501
           S  +L  L L+  +    +E+G   +   L  L ++ N +   L        S+L  L+ 
Sbjct: 50  SFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 107

Query: 502 SRNSLEGDVSVPLSNLQVARILDISENKL-YGPLEFSFNHSSSLWHLFLHNNSLNGSIPS 560
              +L    + P+ +L+  + L+++ N +    L   F++ ++L HL L +N +  SI  
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYC 166

Query: 561 ALFQS-----SQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQ-LCHLR 614
              +         ++LDL  N  +  I P   ++  L+ L L  N L+ ++P      L 
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLT 224

Query: 615 KIAIVDISYNLLD 627
            +  + +  N  D
Sbjct: 225 SLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 49/212 (23%), Positives = 80/212 (37%), Gaps = 23/212 (10%)

Query: 402 LDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPK--YMSMTQLAWLYLNDNQFT 459
           LDLS N     L          L  +++S      Q      Y S++ L+ L L  N   
Sbjct: 33  LDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 460 GRLEEGLLNA-PSLHILDVSNNMLSGQLPHWV-GNFSNLDVLLMSRNSL----EGDVSVP 513
             L  G  +   SL  L      L+  L ++  G+   L  L ++ N +      +    
Sbjct: 90  -SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 514 LSNLQVARILDISENKLYGPLEFSFNHSSSL----WHLFLHNNSLNGSIPSALFQSSQLM 569
           L+NL+    LD+S NK+             +      L L  N +N  I    F+  +L 
Sbjct: 148 LTNLEH---LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLK 203

Query: 570 TLDLRDNEFSGNIPPLINED-SNLRALLLRGN 600
            L L  N+   ++P  I +  ++L+ + L  N
Sbjct: 204 ELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 11/137 (8%)

Query: 87  LKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLS 146
           L  L+ L     + +      +  L +L  L +  N +   FK  +   NL NLE LDLS
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLS 157

Query: 147 GNGL----------IGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLP 196
            N +          +  + +    L+L  N    +     +   L EL L  N+L     
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD 217

Query: 197 QCLSNLTYLRVLDLTSN 213
                LT L+ + L +N
Sbjct: 218 GIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 54/242 (22%), Positives = 76/242 (31%), Gaps = 53/242 (21%)

Query: 542 SSLWHLFLHNNSLNGSIPSALFQS-SQLMTLDLRDNEFSGNIPPLI-NEDSNLRALLLRG 599
            S  +L L  N L   + S  F S  +L  LDL   E    I        S+L  L+L G
Sbjct: 28  FSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85

Query: 600 NNLQ---GNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTL 656
           N +Q         L  L+K+         L  S+ +             P         L
Sbjct: 86  NPIQSLALGAFSGLSSLQKL---VAVETNLA-SLEN------------FPIGHLKTLKEL 129

Query: 657 VVEHFPAISAYYNSTLNLI----FSGEDN-RELRQRVEVKFMAKNRYESYKGGVLEYMT- 710
            V         +N   +      FS   N   L        ++ N+ +S     L  +  
Sbjct: 130 NV--------AHNLIQSFKLPEYFSNLTNLEHL-------DLSSNKIQSIYCTDLRVLHQ 174

Query: 711 ------GLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPR-SFSNLKMIESMDLS 763
                  LDLS N +   I         L  L L  N L  S+P   F  L  ++ + L 
Sbjct: 175 MPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLH 232

Query: 764 YN 765
            N
Sbjct: 233 TN 234

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 47/171 (27%), Positives = 68/171 (39%), Gaps = 17/171 (9%)

Query: 108 LTSL-----TSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLI-----GSLTMQ 157
           LT+L        T L L  N L      +  L     L  L+L    L      G+L   
Sbjct: 22  LTALPPDLPKDTTILHLSENLLYT--FSLATLMPYTRLTQLNLDRAELTKLQVDGTLP-V 78

Query: 158 GEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQ-CLSNLTYLRVLDLTSNQLS 216
              L+L +N+ + +      L  L  L++S+N+L  SLP   L  L  L+ L L  N+L 
Sbjct: 79  LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137

Query: 217 GNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET 267
             LP  +      LE LSL+ NN        +L     L+ L +    + T
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT 186

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 46/175 (26%), Positives = 66/175 (37%), Gaps = 41/175 (23%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLP----NLRNLE 141
              +L  LN+     ++  + +  +L  L +L L  N L       + LP     L  L 
Sbjct: 53  PYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQL-------QSLPLLGQTLPALT 103

Query: 142 VLDLSGNGLIGSLTMQGEKLE--LLNNKCREMNARICELKNLVELNLSWNKLDGSLPQ-C 198
           VLD+S N L          L    L             L  L EL L  N+L  +LP   
Sbjct: 104 VLDVSFNRL--------TSLPLGALRG-----------LGELQELYLKGNELK-TLPPGL 143

Query: 199 LSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ----GSFSLSVL 249
           L+    L  L L +N L+  LP  +   L +L+ L L  N+      G F   +L
Sbjct: 144 LTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 12/183 (6%)

Query: 446 TQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNS 505
                L+L++N         L+    L  L++    L+ +L    G    L  L +S N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQ 88

Query: 506 LEGDVSVP--LSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALF 563
           L+   S+P     L    +LD+S N+L      +      L  L+L  N L  ++P  L 
Sbjct: 89  LQ---SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLL 144

Query: 564 QS-SQLMTLDLRDNEFSGNIPP-LINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDI 621
               +L  L L +N  +  +P  L+N   NL  LLL+ N+L   IP+       +    +
Sbjct: 145 TPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202

Query: 622 SYN 624
             N
Sbjct: 203 HGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 44/204 (21%), Positives = 70/204 (34%), Gaps = 32/204 (15%)

Query: 278 LKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFL 337
             +L+L    +     + L     L  ++L    L        L     L  L L +N L
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL---PVLGTLDLSHNQL 89

Query: 338 KGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSM-GYT 396
           + L  L  +   L  L +S N  +  LP      L EL  L +  N  + ++PP +   T
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPT 147

Query: 397 VRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDN 456
            +L  L L++NN + ELP                     G        +  L  L L +N
Sbjct: 148 PKLEKLSLANNNLT-ELP----------------AGLLNG--------LENLDTLLLQEN 182

Query: 457 QFTGRLEEGLLNAPSLHILDVSNN 480
                + +G   +  L    +  N
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 51/212 (24%), Positives = 68/212 (32%), Gaps = 46/212 (21%)

Query: 301 DLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNF 360
           D   + LS N L  TF    L   T+L  L L    L     L                 
Sbjct: 32  DTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT---KLQVDGT------------ 75

Query: 361 IGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTG 420
                      LP L  LD+S N  + S+P        L  LD+S N  +  LP   L G
Sbjct: 76  -----------LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRG 122

Query: 421 CVSLAFMNVSHNYFGGQI-------FPKYMSMTQLAWLYLNDNQFTGRLEEGLLNA-PSL 472
              L  + +  N    ++               +L  L L +N  T  L  GLLN   +L
Sbjct: 123 LGELQELYLKGN----ELKTLPPGLLTP---TPKLEKLSLANNNLT-ELPAGLLNGLENL 174

Query: 473 HILDVSNNMLSGQLPHWVGNFSNLDVLLMSRN 504
             L +  N L   +P        L    +  N
Sbjct: 175 DTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 40/155 (25%), Positives = 55/155 (35%), Gaps = 49/155 (31%)

Query: 86  SLKQLKILNIGFNSFSESLVP-LLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLD 144
           +L  L +L++ FN  + SL    L  L  L  L+L+GN L       K LP         
Sbjct: 98  TLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL-------KTLP--------- 140

Query: 145 LSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQ-CLSNLT 203
               GL+                             L +L+L+ N L   LP   L+ L 
Sbjct: 141 ---PGLLTPTP------------------------KLEKLSLANNNLT-ELPAGLLNGLE 172

Query: 204 YLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGN 238
            L  L L  N L   +P   F +   L +  L GN
Sbjct: 173 NLDTLLLQENSLY-TIPKGFFGSH-LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 17/170 (10%)

Query: 468 NAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRN---SLEGDVSVPLSNLQVARILD 524
              S   ++     L+  LP       +  +L +S N   +      +P + L     L+
Sbjct: 8   KVASHLEVNCDKRNLT-ALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQ---LN 61

Query: 525 ISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPP 584
           +   +L   L+        L  L L +N L  S+P        L  LD+  N  + ++P 
Sbjct: 62  LDRAEL-TKLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPL 117

Query: 585 -LINEDSNLRALLLRGNNLQGNIPQQLC-HLRKIAIVDISYNLLDGSIPS 632
             +     L+ L L+GN L+  +P  L     K+  + ++ N L   +P+
Sbjct: 118 GALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPA 165

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 710 TGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRG 769
           T L LS N L     + +     L  LNL    L+  +      L ++ ++DLS+N+L+ 
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ- 90

Query: 770 QIPLELSELNYLAIFNVSYNDLS 792
            +PL    L  L + +VS+N L+
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLT 113

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRS-FSNLKMIESMDLSY 764
           L  +  LDLS N+L   +P     L  L  L++S N L+ S+P      L  ++ + L  
Sbjct: 76  LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKG 133

Query: 765 NKL 767
           N+L
Sbjct: 134 NEL 136

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 81.1 bits (199), Expect = 1e-15
 Identities = 111/682 (16%), Positives = 199/682 (29%), Gaps = 163/682 (23%)

Query: 183 ELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQG 242
           E    +  +   L           V +     +  ++P S+ +    ++++ +S +   G
Sbjct: 13  EHQYQYKDI---LSVFEDAF----VDNFDCKDVQ-DMPKSILSK-EEIDHIIMSKDAVSG 63

Query: 243 SFSLSVLANHSRLEVLQISRLQIETENFPWL-PRFQLKVLNLRRCNISGTIPSFLQYQYD 301
           +  L       + E++Q    ++   N+ +L    +               PS +     
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK------TEQRQ----PSMMT---- 109

Query: 302 LRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFI 361
             YI+   + L      +   N ++L+    +    + LL L  +K  L+          
Sbjct: 110 RMYIE-QRDRLYNDNQVFAKYNVSRLQ---PYLKLRQALLELRPAKNVLID--------- 156

Query: 362 GMLPDNFG-MILPELVYLDMS-QNSFEGSIPPSMGYTVRLLF-LDLSSNNFSGELPKQFL 418
           G+L    G   +   V L    Q   +  I           F L+L + N    + +   
Sbjct: 157 GVL--GSGKTWVALDVCLSYKVQCKMDFKI-----------FWLNLKNCNSPETVLEMLQ 203

Query: 419 TGCVSLAFMNVSHNYFGGQIFPKYMSMT-QLAWLYLNDNQFTGRLEEGLLNAP---SLHI 474
                             QI P + S +   + + L  +     L   L + P    L +
Sbjct: 204 KLLY--------------QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 475 LD-VSNNMLSGQLPHWVGNFSNLD--VLLMSRNSLEGDVSVPLSNLQVARILDISENKLY 531
           L  V N            N  NL   +LL +R     D       L  A    IS +   
Sbjct: 250 LLNVQNA--------KAWNAFNLSCKILLTTRFKQVTDF------LSAATTTHISLDHH- 294

Query: 532 GPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSN 591
                +         L L    L+                DL     + N P  +   S 
Sbjct: 295 ---SMTLTPDEVK-SLLL--KYLDCRPQ------------DLPREVLTTN-PRRL---SI 332

Query: 592 LRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGS-----------------IPS-C 633
           +   +  G     N     C  +   I++ S N+L+ +                 IP+  
Sbjct: 333 IAESIRDGLATWDNWKHVNCD-KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 634 FTNIWPWMEEGDPF---NGFVFGYTLVVEHFPAISAYYNS-TLNLIFSGEDNRELRQRVE 689
            + IW  + + D     N     Y+LV +     +    S  L L    E+   L + + 
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLH-KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450

Query: 690 VKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPR 749
             +     ++S            DL    L     S IG+    H  N+ H         
Sbjct: 451 DHYNIPKTFDSD-----------DLIPPYLDQYFYSHIGH----HLKNIEHPERMTLFRM 495

Query: 750 SFSNLKMIESMDLSYNKLRGQIPL---ELSELNYLAIFNVSYNDLSGPTPNTKQFANFDE 806
            F + + +E       K+R          S LN L      Y        N  ++     
Sbjct: 496 VFLDFRFLE------QKIRHDSTAWNASGSILNTLQQLKF-YKPYI--CDNDPKYERL-V 545

Query: 807 SNYRGNLNLCGPAVLKNCSTDL 828
           +     L      ++ +  TDL
Sbjct: 546 NAILDFLPKIEENLICSKYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 75.3 bits (184), Expect = 5e-14
 Identities = 73/554 (13%), Positives = 159/554 (28%), Gaps = 156/554 (28%)

Query: 27  CLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCSWERIK--CNVTTANYNNN 84
               E +    ++ F++ V  + +       ++            IK      +      
Sbjct: 72  LSKQEEM----VQKFVEEVLRINY------KFL---------MSPIKTEQRQPSMMTRMY 112

Query: 85  GSLKQLKILNIGFNSFSESLVP-------LLTSLTSLTS---LFLEGNNLGVGFKPMKVL 134
               Q   L      F++  V        L  +L  L     + ++G  LG G K    L
Sbjct: 113 IE--QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV-LGSG-KTWVAL 168

Query: 135 PNLRNLEVLDLSGNGL----IGSLTMQGEKLELLNNKCREMNARICELKNL---VELNLS 187
               + +V       +    + +       LE+L     +++       +    ++L + 
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 188 WNK-------LDGSLPQCL------SNLTYLRVLDLTSNQL--SGNLPISVFANLTSLEY 232
             +              CL       N       +L+   L  +      V   L++   
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF--KQVTDFLSAATT 286

Query: 233 LSLSGNNFQGSF----SLSVLAN-----HSRL--EVLQISRLQI-----ETENFPWLPRF 276
             +S ++   +       S+L          L  EVL  +  ++        +      +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL--ATW 344

Query: 277 QLKVLNLRRCN---ISGTIPSFLQYQ--YDLR--YIDLSHNNLAGTFPT----------- 318
                N +  N   ++  I S L      + R  +  LS       FP            
Sbjct: 345 D----NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS------VFPPSAHIPTILLSL 394

Query: 319 -W-------------------LLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVI--- 355
            W                   L++   K   + + + +L+  + L +     LH  I   
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA--LHRSIVDH 452

Query: 356 -------SNNNFIGMLPDNFGMILPELVY-LDMSQNSFEGSIPPSMGYTVRLLFLDLSSN 407
                   +++ I    D +      + + L   ++    ++        R++FLD    
Sbjct: 453 YNIPKTFDSDDLIPPYLDQY--FYSHIGHHLKNIEHPERMTL-------FRMVFLDF--- 500

Query: 408 NF-SGELPKQFLTGCVSLAFMNVSH--NYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEE 464
            F   ++         S + +N      ++   I        +L    L+   F  ++EE
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD---FLPKIEE 557

Query: 465 GLLNAPSLHILDVS 478
            L+ +    +L ++
Sbjct: 558 NLICSKYTDLLRIA 571

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 77.2 bits (190), Expect = 4e-15
 Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 20/162 (12%)

Query: 138 RNLEVLDLSGNGLIGSLTMQG--------EKLELLNNKCREMNARI-CELKNLVELNLSW 188
               +LDLS N  +  L  +           L L +N    +++     + NL  L+LS 
Sbjct: 39  SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97

Query: 189 NKLDGSLP-QCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLS 247
           N L  +L     S+L  L VL L +N +   +  + F ++  L+ L LS N     F + 
Sbjct: 98  NHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVE 154

Query: 248 VLANHSRLEVLQISRLQ------IETENFPWLPRFQLKVLNL 283
           ++ + ++L  L +  L       +   +   LP +    L L
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.9 bits (171), Expect = 8e-13
 Identities = 42/179 (23%), Positives = 64/179 (35%), Gaps = 31/179 (17%)

Query: 90  LKILNIGFNSFSESLVP--LLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSG 147
             +L++  N+ S  L      T LT+L SL L  N+L   F   +    + NL  LDLS 
Sbjct: 41  TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN--FISSEAFVPVPNLRYLDLSS 97

Query: 148 NGL--IGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYL 205
           N L  +                          L+ L  L L  N +         ++  L
Sbjct: 98  NHLHTLDEFLFSD-------------------LQALEVLLLYNNHIVVVDRNAFEDMAQL 138

Query: 206 RVLDLTSNQLSGNLPISVFAN---LTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQIS 261
           + L L+ NQ+S   P+ +  +   L  L  L LS N  +    L+ L          + 
Sbjct: 139 QKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.0 bits (148), Expect = 6e-10
 Identities = 47/179 (26%), Positives = 69/179 (38%), Gaps = 24/179 (13%)

Query: 194 SLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHS 253
           ++PQ L + T   +LDL+ N LS          LT+L  L LS N+     S        
Sbjct: 32  NVPQSLPSYT--ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVP 88

Query: 254 RLEVLQIS--RLQ-IETENFPWLPRFQLKVLNLRRCNISGTIPSF-LQYQYDLRYIDLSH 309
            L  L +S   L  ++   F  L    L+VL L   +I   +     +    L+ + LS 
Sbjct: 89  NLRYLDLSSNHLHTLDEFLFSDLQ--ALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQ 145

Query: 310 NNL----AGTFPTWLLQNNTKLEFLFLFNNFLKGL-----LHLPDSKRDLLHLVISNNN 359
           N +                 KL  L L +N LK L       LP   ++ L+L   +NN
Sbjct: 146 NQISRFPVELIKDG--NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL---HNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 40/164 (24%), Positives = 65/164 (39%), Gaps = 17/164 (10%)

Query: 451 LYLNDNQFTG-RLEEGLLNAPSLHILDVSNNMLSGQLPHWV-GNFSNLDVLLMSRN---S 505
           L L+ N  +  R E       +LH L +S+N L+  +         NL  L +S N   +
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHT 102

Query: 506 LEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS 565
           L+  +   L  L    +L +  N +      +F   + L  L+L  N ++   P  L + 
Sbjct: 103 LDEFLFSDLQAL---EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKD 158

Query: 566 ----SQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGN 605
                +LM LDL  N+    +P    +   L A +  G  L  N
Sbjct: 159 GNKLPKLMLLDLSSNKLK-KLPL--TDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.5 bits (139), Expect = 8e-09
 Identities = 41/186 (22%), Positives = 66/186 (35%), Gaps = 32/186 (17%)

Query: 301 DLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNF 360
               +DLSHNNL+     W     T L  L L +N L                 IS+  F
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN---------------FISSEAF 84

Query: 361 IGMLPDNFGMILPELVYLDMSQNSFEGSIPPSM-GYTVRLLFLDLSSNNFSGELPKQFLT 419
           +          +P L YLD+S N    ++   +      L  L L +N+    + +    
Sbjct: 85  VP---------VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFE 133

Query: 420 GCVSLAFMNVSHN---YFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSL--HI 474
               L  + +S N    F  ++      + +L  L L+ N+        L   P+   + 
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193

Query: 475 LDVSNN 480
           L + NN
Sbjct: 194 LYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 43/223 (19%), Positives = 69/223 (30%), Gaps = 53/223 (23%)

Query: 338 KGLLHLPDS-KRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSM-GY 395
           + L ++P S       L +S+NN   +  +     L  L  L +S N     I       
Sbjct: 28  QQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVP 86

Query: 396 TVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLND 455
              L +LDLSSN+    L +   +                         +  L  L L +
Sbjct: 87  VPNLRYLDLSSNHLH-TLDEFLFSD------------------------LQALEVLLLYN 121

Query: 456 NQFTGRLEEGLL-NAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPL 514
           N     ++     +   L  L +S N +S                         ++    
Sbjct: 122 NHIV-VVDRNAFEDMAQLQKLYLSQNQIS---------------------RFPVELIKDG 159

Query: 515 SNLQVARILDISENKLYGPLEFSFNHSSSLWH--LFLHNNSLN 555
           + L    +LD+S NKL            +     L+LHNN L 
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 9/93 (9%)

Query: 712 LDLSSNELTGEIPSAI-GYLQELHALNLSHNHLSGSIPR-SFSNLKMIESMDLSYNKLRG 769
           LDLSSN L   +   +   LQ L  L L +NH+   + R +F ++  ++ + LS N++  
Sbjct: 93  LDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS- 149

Query: 770 QIPLE----LSELNYLAIFNVSYNDLSGPTPNT 798
           + P+E     ++L  L + ++S N L       
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 7/88 (7%)

Query: 709 MTGLDLSSNELTGEIPS--AIGYLQELHALNLSHNHLSGSIPR-SFSNLKMIESMDLSYN 765
              LDLS N L+  + +      L  LH+L LSHNHL+  I   +F  +  +  +DLS N
Sbjct: 41  TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN 98

Query: 766 KLRGQIPLE-LSELNYLAIFNVSYNDLS 792
            L   +     S+L  L +  +  N + 
Sbjct: 99  HLH-TLDEFLFSDLQALEVLLLYNNHIV 125

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 71.6 bits (176), Expect = 2e-14
 Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 25/179 (13%)

Query: 83  NNGSLKQLKILNIGFNSFS-ESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLE 141
            +    + + + +       E +   L++L +   L L  NN+      +  L  + NL 
Sbjct: 18  KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK----ISSLSGMENLR 73

Query: 142 VLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSN 201
           +L L  N +        +K+E L+               L EL +S+N++  +    +  
Sbjct: 74  ILSLGRNLI--------KKIENLDAVA----------DTLEELWISYNQI--ASLSGIEK 113

Query: 202 LTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQI 260
           L  LRVL +++N+++    I   A L  LE L L+GN     +  +   +  R+EV++ 
Sbjct: 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 38/230 (16%), Positives = 69/230 (30%), Gaps = 70/230 (30%)

Query: 162 ELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPI 221
           + +       +    E + + EL+     ++  +   LS L   + L L++N +     I
Sbjct: 9   DAIRIFEERKSVVATEAEKV-ELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEK---I 63

Query: 222 SVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVL 281
           S  + + +L  LSL  N                     I ++    EN   +    L+ L
Sbjct: 64  SSLSGMENLRILSLGRN--------------------LIKKI----ENLDAVAD-TLEEL 98

Query: 282 NLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNF---LK 338
            +    I+                 LS            ++    L  L++ NN      
Sbjct: 99  WISYNQIA----------------SLSG-----------IEKLVNLRVLYMSNNKITNWG 131

Query: 339 GLLHLPDSKRDLLHLVISNNNFIGMLPDNFGM---------ILPELVYLD 379
            +  L      L  L+++ N       +N             LP L  LD
Sbjct: 132 EIDKLAALD-KLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 71.2 bits (175), Expect = 7e-14
 Identities = 30/233 (12%), Positives = 74/233 (31%), Gaps = 33/233 (14%)

Query: 111 LTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCRE 170
             S  +L L   +L     P     NL N+  + +S +  +  L               E
Sbjct: 30  PPSTQTLKLIETHLRT--IPSHAFSNLPNISRIYVSIDVTLQQL---------------E 72

Query: 171 MNARICELKNLVELNLSWNKLDGSLP-QCLSNLTYLRVLDLTSNQLSGNLPISVFANLTS 229
            ++    L  +  + +   +    +    L  L  L+ L + +  L     ++   +   
Sbjct: 73  SHS-FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDI 131

Query: 230 LEYLSLSGNNFQGSFSLSVLAN-HSRLEVLQISRLQIETENFPWLPRF-----QLKVLNL 283
              L ++ N +  S  ++      +    L++      +     +  +     +L  + L
Sbjct: 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-----VQGYAFNGTKLDAVYL 186

Query: 284 RRCNISGTIP--SFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFN 334
            +      I   +F         +D+S  ++    P+  L++  +L     + 
Sbjct: 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 34/219 (15%), Positives = 73/219 (33%), Gaps = 35/219 (15%)

Query: 180 NLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNN 239
           +   L L    L        SNL  +  + ++ +     L    F NL+ + ++ +    
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 240 FQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIP--SFLQ 297
                               ++ +  +      LP   LK L +    +    P  + + 
Sbjct: 92  -------------------NLTYIDPDA--LKELPL--LKFLGIFNTGLK-MFPDLTKVY 127

Query: 298 YQYDLRYIDLSHNNLAGTFPTWLLQN-NTKLEFLFLFNNFLKGLLHLPDSKRDLLHLV-- 354
                  ++++ N    + P    Q    +   L L+NN   G   +     +   L   
Sbjct: 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN---GFTSVQGYAFNGTKLDAV 184

Query: 355 -ISNNNFIGMLPDN-FGMILPELVYLDMSQNSFEGSIPP 391
            ++ N ++ ++  + FG +      LD+SQ S   ++P 
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 27/161 (16%), Positives = 58/161 (36%), Gaps = 13/161 (8%)

Query: 86  SLKQLKILNIGFNSFSESLVP-LLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLD 144
           +L ++  + I        + P  L  L  L  L +    L + F  +  + +     +L+
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILE 136

Query: 145 LSGNGLIGS--------LTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLP 196
           ++ N  + S        L  +   L+L NN    +         L  + L+ NK    + 
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVID 196

Query: 197 Q-CLSNL-TYLRVLDLTSNQLSGNLPISVFANLTSLEYLSL 235
           +     + +   +LD++   ++  LP     +L  L   + 
Sbjct: 197 KDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 51/332 (15%), Positives = 99/332 (29%), Gaps = 110/332 (33%)

Query: 174 RICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYL 233
             CE     +  ++   +   +P    +   L    L    L   +P   F+NL ++  +
Sbjct: 6   PPCECHQEEDFRVTCKDIQ-RIPSLPPSTQTL---KLIETHLR-TIPSHAFSNLPNISRI 60

Query: 234 SLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIP 293
            +S +                     + +  +E+ +F  L +                  
Sbjct: 61  YVSIDV-------------------TLQQ--LESHSFYNLSK------------------ 81

Query: 294 SFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHL 353
                   + +I++ +           L+    L+FL +                     
Sbjct: 82  --------VTHIEIRNTRNLTYIDPDALKELPLLKFLGI--------------------- 112

Query: 354 VISNNNFIGMLPD-NFGMILPELVYLDMSQNSFEGSIPPSM--GYTVRLLFLDLSSNNFS 410
              N   + M PD            L+++ N +  SIP +   G     L L L +N F+
Sbjct: 113 --FNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169

Query: 411 GELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLN-- 468
                            +V    F G         T+L  +YLN N++   +++      
Sbjct: 170 -----------------SVQGYAFNG---------TKLDAVYLNKNKYLTVIDKDAFGGV 203

Query: 469 APSLHILDVSNNMLSGQLPHWVGNFSNLDVLL 500
                +LDVS   ++  LP       +L  L+
Sbjct: 204 YSGPSLLDVSQTSVT-ALPS--KGLEHLKELI 232

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 36/236 (15%), Positives = 78/236 (33%), Gaps = 40/236 (16%)

Query: 388 SIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKY-MSMT 446
           S+PPS         L L   +    +P    +   +++ + VS +    Q+      +++
Sbjct: 28  SLPPS------TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS 80

Query: 447 QLAWLYLNDNQFTGRLEEGLL-NAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNS 505
           ++  + + + +    ++   L   P L  L + N  L    P                  
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTK-------------- 125

Query: 506 LEGDVSVPLSNLQVARILDISENKLYGPL-EFSFNH-SSSLWHLFLHNNSLNGSIPSALF 563
                   + +  +  IL+I++N     +   +F    +    L L+NN    S+    F
Sbjct: 126 --------VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAF 176

Query: 564 QSSQLMTLDLRDNEFSGNIPP--LINEDSNLRALLLRGNNLQ---GNIPQQLCHLR 614
             ++L  + L  N++   I         S    L +   ++        + L  L 
Sbjct: 177 NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELI 232

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 29/227 (12%), Positives = 72/227 (31%), Gaps = 23/227 (10%)

Query: 338 KGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSM-GYT 396
           K +  +P        L +   + +  +P +    LP +  + +S +     +        
Sbjct: 21  KDIQRIPSLPPSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL 79

Query: 397 VRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQI-----FPKYMSMTQLAWL 451
            ++  +++ +      +    L     L F+ + +      +       K  S      L
Sbjct: 80  SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT----GLKMFPDLTKVYSTDIFFIL 135

Query: 452 YLNDNQFTGRLEEGLLN--APSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRN----S 505
            + DN +   +              L + NN  +  +  +  N + LD + +++N     
Sbjct: 136 EITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTV 194

Query: 506 LEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNN 552
           ++ D    + +     +LD+S+  +             L  L   N 
Sbjct: 195 IDKDAFGGVYSGP--SLLDVSQTSV---TALPSKGLEHLKELIARNT 236

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 66.9 bits (164), Expect = 3e-12
 Identities = 62/226 (27%), Positives = 86/226 (38%), Gaps = 49/226 (21%)

Query: 112 TSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREM 171
                L L+ N L     P K    L  L +L L+ N L                  + +
Sbjct: 37  ADTKKLDLQSNKLSS--LPSKAFHRLTKLRLLYLNDNKL------------------QTL 76

Query: 172 NARIC-ELKNLVELNLSWNKLDGSLPQCL-SNLTYLRVLDLTSNQLSGNLPISVFANLTS 229
            A I  ELKNL  L ++ NKL  +LP  +   L  L  L L  NQL  +LP  VF +LT 
Sbjct: 77  PAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTK 134

Query: 230 LEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNIS 289
           L YLSL  N  Q S    V    + L+ L++   Q++      +P      L        
Sbjct: 135 LTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-----RVPEGAFDKLT------- 181

Query: 290 GTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNN 335
                      +L+ + L +N L    P     +  KL+ L L  N
Sbjct: 182 -----------ELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 51/186 (27%), Positives = 81/186 (43%), Gaps = 23/186 (12%)

Query: 402 LDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYM--SMTQLAWLYLNDNQFT 459
           LDL SN  S  LP +       L  + ++ N    Q  P  +   +  L  L++ DN+  
Sbjct: 42  LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQ 98

Query: 460 GRLEEGLLNAP-SLHILDVSNNMLSGQLPHWV-GNFSNLDVLLMSRNSLEGDVSVP---- 513
             L  G+ +   +L  L +  N L   LP  V  + + L  L +  N L+   S+P    
Sbjct: 99  -ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ---SLPKGVF 153

Query: 514 --LSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS-SQLMT 570
             L++L+    L +  N+L    E +F+  + L  L L NN L   +P   F S  +L  
Sbjct: 154 DKLTSLK---ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKM 209

Query: 571 LDLRDN 576
           L L++N
Sbjct: 210 LQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 10/184 (5%)

Query: 301 DLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLH-LPDSKRDLLHLVISNNN 359
           D + +DL  N L+ + P+      TKL  L+L +N L+ L   +    ++L  L +++N 
Sbjct: 38  DTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 360 FIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSM-GYTVRLLFLDLSSNNFSGELPKQFL 418
            +  LP      L  L  L + +N  + S+PP +     +L +L L  N     LPK   
Sbjct: 97  -LQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVF 153

Query: 419 TGCVSLAFMNVSHNYFGGQIFPKYM--SMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILD 476
               SL  + + +N    +  P+     +T+L  L L++NQ     E    +   L +L 
Sbjct: 154 DKLTSLKELRLYNNQL--KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211

Query: 477 VSNN 480
           +  N
Sbjct: 212 LQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 10/116 (8%)

Query: 493 FSNLDVLLMSRN---SLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFL 549
            ++   L +  N   SL       L+ L++   L +++NKL       F    +L  L++
Sbjct: 36  PADTKKLDLQSNKLSSLPSKAFHRLTKLRL---LYLNDNKLQTLPAGIFKELKNLETLWV 92

Query: 550 HNNSLNGSIPSALFQS-SQLMTLDLRDNEFSGNIPPLINED-SNLRALLLRGNNLQ 603
            +N L  ++P  +F     L  L L  N+   ++PP + +  + L  L L  N LQ
Sbjct: 93  TDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ 146

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 49/158 (31%), Positives = 72/158 (45%), Gaps = 16/158 (10%)

Query: 91  KILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGL 150
              N+   S ++        L S+  +    +++    K ++ +  L N+  L L GN L
Sbjct: 22  IKANLKKKSVTD--AVTQNELNSIDQIIANNSDI----KSVQGIQYLPNVRYLALGGNKL 75

Query: 151 --IG---SLTMQGEKLELLNNKCREMNARICE-LKNLVELNLSWNKLDGSLPQCLSN-LT 203
             I     LT     L L  N+ + +   + + L NL EL L  N+L  SLP  + + LT
Sbjct: 76  HDISALKELT-NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLT 133

Query: 204 YLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ 241
            L  L+L  NQL  +LP  VF  LT+L  L LS N  Q
Sbjct: 134 NLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ 170

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 55/188 (29%), Positives = 78/188 (41%), Gaps = 32/188 (17%)

Query: 71  RIKCNVTTANYNNNG--------SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGN 122
                   AN              L  +  +    +      V  +  L ++  L L GN
Sbjct: 16  DAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIK--SVQGIQYLPNVRYLALGGN 73

Query: 123 NLGVGFKPMKVLPNLRNLEVLDLSGNGL-------IGSLTMQGEKLELLNNKCREMNARI 175
            L      +  L  L NL  L L+GN L          LT   ++L L+ N+ + +   +
Sbjct: 74  KL----HDISALKELTNLTYLILTGNQLQSLPNGVFDKLT-NLKELVLVENQLQSLPDGV 128

Query: 176 C-ELKNLVELNLSWNKLDGSLPQ----CLSNLTYLRVLDLTSNQLSGNLPISVFANLTSL 230
             +L NL  LNL+ N+L  SLP+     L+NLT L   DL+ NQL  +LP  VF  LT L
Sbjct: 129 FDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTEL---DLSYNQLQ-SLPEGVFDKLTQL 183

Query: 231 EYLSLSGN 238
           + L L  N
Sbjct: 184 KDLRLYQN 191

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 58/162 (35%), Positives = 81/162 (50%), Gaps = 16/162 (9%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDL 145
            L  ++ L +G N   +  +  L  LT+LT L L GN L     P  V   L NL+ L L
Sbjct: 61  YLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQS--LPNGVFDKLTNLKELVL 116

Query: 146 SGN-------GLIGSLTMQGEKLELLNNKCREMNARICE-LKNLVELNLSWNKLDGSLPQ 197
             N       G+   LT     L L +N+ + +   + + L NL EL+LS+N+L  SLP+
Sbjct: 117 VENQLQSLPDGVFDKLT-NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL-QSLPE 174

Query: 198 -CLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGN 238
                LT L+ L L  NQL  ++P  VF  LTSL+Y+ L  N
Sbjct: 175 GVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 16/117 (13%)

Query: 444 SMTQLAWLYLNDNQFTGRLEEGLLNAP-SLHILDVSNNMLSGQLPHWV-GNFSNLDVLLM 501
            +T L  L L +NQ    L +G+ +   +L  L++++N L   LP  V    +NL  L +
Sbjct: 107 KLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDL 164

Query: 502 SRNSLEGDVSVP------LSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNN 552
           S N L+   S+P      L+ L+    L + +N+L    +  F+  +SL +++LH+N
Sbjct: 165 SYNQLQ---SLPEGVFDKLTQLK---DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 67.6 bits (165), Expect = 1e-11
 Identities = 54/383 (14%), Positives = 118/383 (30%), Gaps = 47/383 (12%)

Query: 86  SLKQLKILNIGFNSFS----ESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVL-PNLRNL 140
           + + LK L++  +         L     + TSL SL +      V F  ++ L     NL
Sbjct: 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNL 213

Query: 141 EVLDLSG---NGLIGSLTMQGEKLELLNNKC----------REMNARICELKNLVELNLS 187
           + L L+       + +L  +  +LE L                ++  +   K L  L+  
Sbjct: 214 KSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGF 273

Query: 188 WNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLS 247
           W+ +   LP   S  + L  L+L+   +     + +      L+ L +          L 
Sbjct: 274 WDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI--EDAGLE 331

Query: 248 VLANH-SRLEVLQISRLQIETENFPWLPR-----------FQLKVLNLRRCNISG-TIPS 294
           VLA+    L  L++   +                       +L+ +      ++   + +
Sbjct: 332 VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALIT 391

Query: 295 FLQYQYDLRYIDLSHNNLAGTFPTW----------LLQNNTKLEFLFLFNNF-LKGLLHL 343
             + + ++    L                      ++++   L  L L      K   ++
Sbjct: 392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYI 451

Query: 344 PDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSF--EGSIPPSMGYTVRLLF 401
               + +  L ++      +   +       L  L++    F  +  +  +      +  
Sbjct: 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE-TMRS 510

Query: 402 LDLSSNNFSGELPKQFLTGCVSL 424
           L +SS + S    K        L
Sbjct: 511 LWMSSCSVSFGACKLLGQKMPKL 533

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 59.5 bits (144), Expect = 3e-09
 Identities = 49/310 (15%), Positives = 107/310 (34%), Gaps = 40/310 (12%)

Query: 84  NGSLKQLKILNIGFNSFSESLVPLLTSLTSLT----------SLFLEGNNLGVGFKPMKV 133
               +++ I N    S   +++     + S+           +L  +G    V      +
Sbjct: 42  RWCRRKVFIGNCYAVSP-ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAM 100

Query: 134 LPNLRNLEVLDLSG----NGLIGSLTMQGEKLELLN-NKCREMN-------ARICELKNL 181
             +   LE + L      +  +  +    +  ++L  + C   +       A  C  +NL
Sbjct: 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC--RNL 158

Query: 182 VELNLSWNKL----DGSLPQCLSNLTYLRVLDL--TSNQLSGNLPISVFANLTSLEYLSL 235
            EL+L  + +       L       T L  L++   ++++S +    +     +L+ L L
Sbjct: 159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218

Query: 236 SGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRF-------QLKVLNLRRCNI 288
           +        + ++L    +LE L       E     +           +L+ L+     +
Sbjct: 219 NRAVPLEKLA-TLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV 277

Query: 289 SGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNF-LKGLLHLPDSK 347
              +P+       L  ++LS+  +       LL    KL+ L++ +     GL  L  + 
Sbjct: 278 PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTC 337

Query: 348 RDLLHLVISN 357
           +DL  L +  
Sbjct: 338 KDLRELRVFP 347

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 32/207 (15%), Positives = 62/207 (29%), Gaps = 13/207 (6%)

Query: 102 ESLVPLLTSLTSLTSLFLEGNNLG-VGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEK 160
           + LV +      L S+      +         +  N  N+    L          +  E 
Sbjct: 362 QGLVSVSMGCPKLESVLYFCRQMTNAALI--TIARNRPNMTRFRLCIIEPKAPDYLTLEP 419

Query: 161 LELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLP 220
           L+          A +   K+L  L+LS    D       +    + +L +     S    
Sbjct: 420 LD------IGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473

Query: 221 ISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWL----PRF 276
             V +   SL  L +    F     L+  +    +  L +S   +       L    P+ 
Sbjct: 474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKL 533

Query: 277 QLKVLNLRRCNISGTIPSFLQYQYDLR 303
            ++V++ R    S      ++  +  R
Sbjct: 534 NVEVIDERGAPDSRPESCPVERVFIYR 560

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.4 bits (123), Expect = 1e-06
 Identities = 42/251 (16%), Positives = 76/251 (30%), Gaps = 24/251 (9%)

Query: 189 NKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSV 248
             +   +    S+ T+L  + L    ++ +    +  +  + + L LS      +  L+ 
Sbjct: 91  GYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAA 150

Query: 249 LANH-SRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDL 307
           +A     L+ L +    ++  +  WL  F     +L   NIS           ++ +  L
Sbjct: 151 IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC-------LASEVSFSAL 203

Query: 308 SHNNLAGTFPTWLLQNNTKLEFLFLFNNF-LKGLLHLPDSKRDLLHLVISNNNFIGMLPD 366
                       L+     L+ L L     L+ L  L      L  L             
Sbjct: 204 ER----------LVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDV 253

Query: 367 NFGMI-----LPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGC 421
             G+        EL  L    ++    +P       RL  L+LS          + L  C
Sbjct: 254 YSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC 313

Query: 422 VSLAFMNVSHN 432
             L  + V   
Sbjct: 314 PKLQRLWVLDY 324

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 67.3 bits (164), Expect = 1e-11
 Identities = 62/341 (18%), Positives = 108/341 (31%), Gaps = 43/341 (12%)

Query: 86  SLKQLKILNIGFNSFSE----SLVPLLTSLTSLTSLFLEGNNL-GVGFKPMKVL-PNLRN 139
             +++K L +  +SFSE     L  L    TSL  L         +  K ++ +  N R+
Sbjct: 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221

Query: 140 LEVLDLSGNGLI--GSLTMQGEKLELLN----NKCREMNARICELKNLVELNLS--WNKL 191
           L  + +    ++           LE       N+   M  +   L    +L         
Sbjct: 222 LVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG 281

Query: 192 DGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLAN 251
              +P        +R LDL    L      ++     +LE L     N  G   L VLA 
Sbjct: 282 PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR--NVIGDRGLEVLAQ 339

Query: 252 H-SRLEVLQISRLQIETENFPWLPRF-------------QLKVLNLRRCNIS----GTIP 293
           +  +L+ L+I R   E                       +L+ + +   +I+     +I 
Sbjct: 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399

Query: 294 SFLQYQYDLRYIDLSHNNLAGTFPTW-----LLQNNTKLEFLFLFNNFLK----GLLHLP 344
           ++L+   D R + L         P       LL    KL     +         GL ++ 
Sbjct: 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG 459

Query: 345 DSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSF 385
               ++  +++            F    P L  L+M    F
Sbjct: 460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 63.4 bits (154), Expect = 2e-10
 Identities = 27/194 (13%), Positives = 56/194 (28%), Gaps = 20/194 (10%)

Query: 102 ESLVPLLTSLTSLTSLFLEGNNLG-VGFKPM-KVLPNLRNLEVLDLSGNGLIGSLTMQGE 159
             L+ L      L  + +  +++     + +   L NL +  ++ L     I  L +   
Sbjct: 368 RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427

Query: 160 KLELLNNKCREMNARICELKNLVELNLSWNKL---DGSLPQCLSNLTYLRVLDLTSNQLS 216
              LL              K L        +    D  L         +R + L     S
Sbjct: 428 VRSLLIG-----------CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES 476

Query: 217 GNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWL--- 273
               +       +L+ L + G  F      + +     L  L +   +        +   
Sbjct: 477 DEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMA 536

Query: 274 -PRFQLKVLNLRRC 286
            P + ++++  RR 
Sbjct: 537 RPYWNIELIPSRRV 550

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 54/345 (15%), Positives = 101/345 (29%), Gaps = 71/345 (20%)

Query: 93  LNIGFNSFSESLVPLLTSLTSLT----------SLFLEGNNLGVGFKPMKVLPNLRNLEV 142
           + + + +  + L     +L SL           +L  E     V     ++  NLR L+ 
Sbjct: 57  MALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKS 116

Query: 143 LDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKL--DGSLPQCLS 200
           +          + +    L+ L               +L  L L          L   ++
Sbjct: 117 VHFRR------MIVSDLDLDRLAKAR---------ADDLETLKLDKCSGFTTDGLLSIVT 161

Query: 201 NLTYLRVLDLTSN---QLSGNLPISVFANLTSLEYLSLSGNNFQ--GSFSLSVLANHSR- 254
           +   ++ L +  +   +  G     +  + TSLE L+     F       L  +A + R 
Sbjct: 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221

Query: 255 LEVLQISRLQIETENFPWLPRFQLKVLNLRRCNIS------------------------- 289
           L  +++   +I      +     L+       N                           
Sbjct: 222 LVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG 281

Query: 290 -GTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNF-LKGLLHLPDSK 347
              +P    +   +R +DL +  L       L+Q    LE L   N    +GL  L    
Sbjct: 282 PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYC 341

Query: 348 RDLLHLVISNNNFIGMLPDNFGMI-----------LPELVYLDMS 381
           + L  L I        + D  G++             EL Y+ + 
Sbjct: 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY 386

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 28/131 (21%), Positives = 44/131 (33%), Gaps = 22/131 (16%)

Query: 108 LTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNK 167
            T+      L L G  +        +   L   + +D S N +         KL+     
Sbjct: 15  YTNAVRDRELDLRGYKIP---VIENLGATLDQFDAIDFSDNEI--------RKLDGFPL- 62

Query: 168 CREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANL 227
                     L+ L  L ++ N++          L  L  L LT+N L     +   A+L
Sbjct: 63  ----------LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASL 112

Query: 228 TSLEYLSLSGN 238
            SL YL +  N
Sbjct: 113 KSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 27/130 (20%), Positives = 47/130 (36%), Gaps = 8/130 (6%)

Query: 207 VLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIE 266
           ++ LT+  +      + + N      L L G       +L    +    + +  S  +I 
Sbjct: 1   MVKLTAELIEQ---AAQYTNAVRDRELDLRGYKIPVIENLGATLDQ--FDAIDFSDNEIR 55

Query: 267 T-ENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNT 325
             + FP L R  LK L +    I        Q   DL  + L++N+L        L +  
Sbjct: 56  KLDGFPLLRR--LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK 113

Query: 326 KLEFLFLFNN 335
            L +L +  N
Sbjct: 114 SLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDL 145
            L++LK L +  N        L  +L  LT L L  N+L      +  L +L++L  L +
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCI 120

Query: 146 SGN 148
             N
Sbjct: 121 LRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 19/115 (16%)

Query: 277 QLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWL--LQNNTKLEFLFLFN 334
           + + L+LR   I   I +          ID S N +       L       +L+ L + N
Sbjct: 20  RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI-----RKLDGFPLLRRLKTLLVNN 73

Query: 335 NFLKGLL-HLPDSKRDLLHLVISNNNFIGMLPDNFGMI-----LPELVYLDMSQN 383
           N +  +   L  +  DL  L+++NN+         G +     L  L YL + +N
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSL-----VELGDLDPLASLKSLTYLCILRN 123

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 66.7 bits (162), Expect = 2e-11
 Identities = 44/227 (19%), Positives = 81/227 (35%), Gaps = 28/227 (12%)

Query: 58  WVDNRTSDCCSWERIKCNVTTANYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSL--- 114
           W  + +   C   + +      +   +  L +   L++  ++  +S +     L  L   
Sbjct: 322 WTGSDSQKECVLLKDRPECWCRDSATDEQLFRC-ELSVEKSTVLQSELESCKELQELEPE 380

Query: 115 -----TSLFLEGNNLGVGFKPMKVLPNLRNLEVLD--------------LSGNGLIGSLT 155
                 ++ L    L       + L     L+ +D              L  N ++    
Sbjct: 381 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY 440

Query: 156 MQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQL 215
                L L +     +   + +L  +  L+LS N+L  +LP  L+ L  L VL  + N L
Sbjct: 441 ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL 498

Query: 216 SGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISR 262
                +   ANL  L+ L L  N  Q S ++  L +  RL +L +  
Sbjct: 499 EN---VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.2 bits (153), Expect = 2e-10
 Identities = 36/161 (22%), Positives = 59/161 (36%), Gaps = 29/161 (18%)

Query: 86  SLKQLKILNIGFNSFSESLV-----PLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNL 140
           +LK +  +   +     S        L      +  L L   +L V    +  L  L  +
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV----LCHLEQLLLV 465

Query: 141 EVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLS 200
             LDLS N L                  R +   +  L+ L  L  S N L+ ++   ++
Sbjct: 466 THLDLSHNRL------------------RALPPALAALRCLEVLQASDNALE-NVDG-VA 505

Query: 201 NLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ 241
           NL  L+ L L +N+L  +  I    +   L  L+L GN+  
Sbjct: 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.5 bits (120), Expect = 2e-06
 Identities = 45/263 (17%), Positives = 81/263 (30%), Gaps = 13/263 (4%)

Query: 536 FSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRD----NEFSGNIPPLINEDSN 591
              N  S +W   L   SLN  +P   F+     +   ++     +           D  
Sbjct: 291 DGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQ 350

Query: 592 LRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFV 651
           L    L        +  +L   +++  ++        +I      +              
Sbjct: 351 LFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRAL---DPLLYEKETLQ 406

Query: 652 FGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKG-GVLEYMT 710
           +  TL        +   +     +      +     V V  +A            L  +T
Sbjct: 407 YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVT 466

Query: 711 GLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRG- 769
            LDLS N L   +P A+  L+ L  L  S N L  ++    +NL  ++ + L  N+L+  
Sbjct: 467 HLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQS 523

Query: 770 QIPLELSELNYLAIFNVSYNDLS 792
                L     L + N+  N L 
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.8 bits (118), Expect = 3e-06
 Identities = 55/352 (15%), Positives = 99/352 (28%), Gaps = 21/352 (5%)

Query: 183 ELNLSWNKLDGSLPQCLSNLTYLR-VLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ 241
           EL L  N    + P   S   Y R +L                         S       
Sbjct: 211 ELELVQNAFF-TDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGS 269

Query: 242 GSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYD 301
              +L ++ + + L V   +       +  WL       LN +    +            
Sbjct: 270 RMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHT--FRVIWTGSDS 327

Query: 302 LRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFI 361
            +   L  +             + +L    L       L    +S ++L  L   N   +
Sbjct: 328 QKECVLLKDRPECWCR--DSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCL 385

Query: 362 GMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGC 421
             +       +  +  LD      E     S    V  +      +  S  L +  +   
Sbjct: 386 LTI-------ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM 438

Query: 422 VSLA--FMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSN 479
                  ++++H      +      +  +  L L+ N+    L   L     L +L  S+
Sbjct: 439 EYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD 495

Query: 480 NMLSGQLPHWVGNFSNLDVLLMSRNSLEG-DVSVPLSNLQVARILDISENKL 530
           N L   +   V N   L  LL+  N L+      PL +     +L++  N L
Sbjct: 496 NALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.4 bits (117), Expect = 5e-06
 Identities = 45/324 (13%), Positives = 93/324 (28%), Gaps = 14/324 (4%)

Query: 161 LELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLP 220
           L             +   +  + +  S     GS    L  +     L +      G   
Sbjct: 236 LGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNR 295

Query: 221 ISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKV 280
            S                       +   ++  +  VL   R +    +       QL  
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDE--QLFR 353

Query: 281 LNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGL 340
             L     S  + S L+   +L+ ++  +          ++     L+ L      L+  
Sbjct: 354 CELS-VEKSTVLQSELESCKELQELEPENK----WCLLTIILLMRALDPLLYEKETLQYF 408

Query: 341 LHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLL 400
             L          +    +   +      M   ++  L ++      ++   +   + + 
Sbjct: 409 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVT 466

Query: 401 FLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTG 460
            LDLS N     LP   L     L  +  S N    +      ++ +L  L L +N+   
Sbjct: 467 HLDLSHNRLR-ALPPA-LAALRCLEVLQASDNAL--ENVDGVANLPRLQELLLCNNRLQQ 522

Query: 461 RLE-EGLLNAPSLHILDVSNNMLS 483
               + L++ P L +L++  N L 
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGNSLC 546

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 27/129 (20%), Positives = 43/129 (33%), Gaps = 20/129 (15%)

Query: 110 SLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCR 169
           + + +  L L+ +    G K   +      LE L     GL          +  L     
Sbjct: 15  TPSDVKELVLDNSRSNEG-KLEGLTDEFEELEFLSTINVGL--------TSIANLPK--- 62

Query: 170 EMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTS 229
                   L  L +L LS N++ G L         L  L+L+ N++     I     L +
Sbjct: 63  --------LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLEN 114

Query: 230 LEYLSLSGN 238
           L+ L L   
Sbjct: 115 LKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 3/111 (2%)

Query: 226 NLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET-ENFPWLPRFQLKVLNLR 284
             + ++ L L  +         +      LE L    + + +  N P L +  LK L L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNK--LKKLELS 72

Query: 285 RCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNN 335
              +SG +    +   +L +++LS N +        L+    L+ L LFN 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDL 145
            L +LK L +  N  S  L  L     +LT L L GN +      ++ L  L NL+ LDL
Sbjct: 62  KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK-DLSTIEPLKKLENLKSLDL 120

Query: 146 SGN 148
              
Sbjct: 121 FNC 123

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 4/111 (3%)

Query: 159 EKLELLNNKCREM--NARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLS 216
            +L L NN+   +       +L  L ++N S NK+           + +  + LTSN+L 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 217 GNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET 267
            N+   +F  L SL+ L L  N              S + +L +   QI T
Sbjct: 95  -NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITT 143

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 25/154 (16%)

Query: 91  KILNIGFNSFSE-SLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNG 149
             L +  N F+      +   L  L  +    N +               +  + L+ N 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD--IEEGAFEGASGVNEILLTSNR 92

Query: 150 LIGSLTMQGEKLELLNNKCREMNARICE-LKNLVELNLSWNKLDGSLPQ-CLSNLTYLRV 207
           L                    +  ++ + L++L  L L  N++   +       L+ +R+
Sbjct: 93  L------------------ENVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRL 133

Query: 208 LDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ 241
           L L  NQ++  +    F  L SL  L+L  N F 
Sbjct: 134 LSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 10/115 (8%)

Query: 446 TQLAWLYLNDNQFTGRLEEGLLN-APSLHILDVSNNMLSGQLPHWV-GNFSNLDVLLMSR 503
            QL  +  ++N+ T  +EEG    A  ++ + +++N L   + H +     +L  L++  
Sbjct: 57  PQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRS 114

Query: 504 N---SLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLN 555
           N    +  D  + LS+++   +L + +N++      +F+   SL  L L  N  N
Sbjct: 115 NRITCVGNDSFIGLSSVR---LLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 26/138 (18%), Positives = 42/138 (30%), Gaps = 11/138 (7%)

Query: 203 TYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISR 262
            Y   L L +N+ +      +F  L  L  ++ S N              S +  + ++ 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS 90

Query: 263 LQIETENFPW-----LPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFP 317
            ++E           L    LK L LR   I+            +R + L  N +  T  
Sbjct: 91  NRLEN--VQHKMFKGLE--SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVA 145

Query: 318 TWLLQNNTKLEFLFLFNN 335
                    L  L L  N
Sbjct: 146 PGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 5/113 (4%)

Query: 494 SNLDVLLMSRNSLEG-DVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNN 552
                L ++ N     + +     L   R ++ S NK+    E +F  +S +  + L +N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 553 SLNGSIPSALFQS-SQLMTLDLRDNEFSGNIPPLINED-SNLRALLLRGNNLQ 603
            L  ++   +F+    L TL LR N  +  +        S++R L L  N + 
Sbjct: 92  RLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT 142

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 64.5 bits (157), Expect = 4e-11
 Identities = 46/211 (21%), Positives = 82/211 (38%), Gaps = 22/211 (10%)

Query: 71  RIKCNVTTANYNNNGSLKQLKILNIGFNSFS-ESLVPLLTSLTSLTSLFLEGNNLGVGFK 129
           R   +        + S  +++ +++  +     +L  +L+  + L +L LEG  L     
Sbjct: 76  RCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS--DP 133

Query: 130 PMKVLPNLRNLEVLDLSGNGLIGSLTMQG-----EKLELLN-NKCREMN--------ARI 175
            +  L    NL  L+LSG        +Q       +L+ LN + C +          A +
Sbjct: 134 IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193

Query: 176 CELKNLVELNLS-WNKL--DGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEY 232
              + + +LNLS + K      L   +     L  LDL+ + +  N     F  L  L++
Sbjct: 194 S--ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251

Query: 233 LSLSGNNFQGSFSLSVLANHSRLEVLQISRL 263
           LSLS        +L  L     L+ LQ+  +
Sbjct: 252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 50.6 bits (121), Expect = 9e-07
 Identities = 31/177 (17%), Positives = 64/177 (36%), Gaps = 10/177 (5%)

Query: 142 VLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSN 201
            +D           +Q   L     +   ++  + +   L  L+L   +L   +   L+ 
Sbjct: 81  FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 140

Query: 202 LTYLRVLDLTS-NQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHS--RLEVL 258
            + L  L+L+  +  S     ++ ++ + L+ L+LS         + V   H    +  L
Sbjct: 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200

Query: 259 QISRL--QIETENFPWLPRF--QLKVLNLRRC-NIS-GTIPSFLQYQYDLRYIDLSH 309
            +S     ++  +   L R    L  L+L     +       F Q  Y L+++ LS 
Sbjct: 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY-LQHLSLSR 256

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 43/239 (17%), Positives = 80/239 (33%), Gaps = 22/239 (9%)

Query: 161 LELLNNKCREMNARIC-ELKNLVELNLSWNKLD----GSLPQCLSNLTYLRVLDLTSNQL 215
              L        + +C     L      W  LD       P     L    V+     + 
Sbjct: 21  FSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRS 80

Query: 216 SGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPR 275
             + P++   +   ++++ LS +  + S    +L+  S+L+ L +  L++       L +
Sbjct: 81  FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 140

Query: 276 F-QLKVLNLRRC-NIS-GTIPSFLQYQYDLRYIDLSHNNL--AGTFPTWLLQNNTKLEFL 330
              L  LNL  C   S   + + L     L  ++LS             +   +  +  L
Sbjct: 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200

Query: 331 FLF--NNFL--KGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMI----LPELVYLDMS 381
            L      L    L  L     +L+HL +S++  +     N        L  L +L +S
Sbjct: 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML----KNDCFQEFFQLNYLQHLSLS 255

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 13/135 (9%)

Query: 86  SLKQLKILNIGFNSF--SESLVPLLTSLT-SLTSLFLEGNNLGVGFKPMKVL-PNLRNLE 141
           S  +L  LN+ +      + +   +  ++ ++T L L G    +    +  L     NL 
Sbjct: 166 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225

Query: 142 VLDLSGNGLIGSLT----MQGEKLELLN-NKCREMN----ARICELKNLVELNLSWNKLD 192
            LDLS + ++ +       Q   L+ L+ ++C ++       + E+  L  L +     D
Sbjct: 226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPD 285

Query: 193 GSLPQCLSNLTYLRV 207
           G+L      L +L++
Sbjct: 286 GTLQLLKEALPHLQI 300

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 60.5 bits (147), Expect = 8e-11
 Identities = 30/129 (23%), Positives = 44/129 (34%), Gaps = 20/129 (15%)

Query: 110 SLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCR 169
           +  ++  L L+      G K   +     NLE L L   GL          +  L     
Sbjct: 22  TPAAVRELVLDNCKSNDG-KIEGLTAEFVNLEFLSLINVGL--------ISVSNLPK--- 69

Query: 170 EMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTS 229
                   L  L +L LS N++ G L      L  L  L+L+ N+L     +     L  
Sbjct: 70  --------LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLEC 121

Query: 230 LEYLSLSGN 238
           L+ L L   
Sbjct: 122 LKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 47/159 (29%), Positives = 65/159 (40%), Gaps = 30/159 (18%)

Query: 80  NYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRN 139
                 ++++L + N   N     +  L     +L  L L    L      +  LP L  
Sbjct: 19  RNRTPAAVRELVLDNCKSND--GKIEGLTAEFVNLEFLSLINVGL----ISVSNLPKLPK 72

Query: 140 LEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLD--GSLPQ 197
           L+ L+LS N + G L M  EKL                  NL  LNLS NKL    +L +
Sbjct: 73  LKKLELSENRIFGGLDMLAEKLP-----------------NLTHLNLSGNKLKDISTL-E 114

Query: 198 CLSNLTYLRVLDLTSNQLSGNLP---ISVFANLTSLEYL 233
            L  L  L+ LDL + +++ NL     SVF  L  L YL
Sbjct: 115 PLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 3/111 (2%)

Query: 226 NLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET-ENFPWLPRFQLKVLNLR 284
              ++  L L            + A    LE L +  + + +  N P LP+  LK L L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPK--LKKLELS 79

Query: 285 RCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNN 335
              I G +    +   +L +++LS N L        L+    L+ L LFN 
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 61.6 bits (150), Expect = 9e-11
 Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 20/141 (14%)

Query: 112 TSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGL----------IGSLTMQGEKL 161
            ++T + LE N + V   P       + L  +DLS N +          + SL      L
Sbjct: 32  ETITEIRLEQNTIKV--IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN----SL 85

Query: 162 ELLNNKCREMNARICE-LKNLVELNLSWNKLDGSLP-QCLSNLTYLRVLDLTSNQLSGNL 219
            L  NK  E+   + E L +L  L L+ NK+   L      +L  L +L L  N+L   +
Sbjct: 86  VLYGNKITELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQ-TI 143

Query: 220 PISVFANLTSLEYLSLSGNNF 240
               F+ L +++ + L+ N F
Sbjct: 144 AKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 34/156 (21%), Positives = 53/156 (33%), Gaps = 26/156 (16%)

Query: 180 NLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNN 239
            + E+ L  N +    P   S    LR +DL++NQ+S  L    F  L SL  L L GN 
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK 91

Query: 240 FQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQ 299
                  S+      L++L ++  +I       L     +  +L                
Sbjct: 92  IT-ELPKSLFEGLFSLQLLLLNANKINC-----LRVDAFQ--DLHN-------------- 129

Query: 300 YDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNN 335
             L  + L  N L  T           ++ + L  N
Sbjct: 130 --LNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 5/111 (4%)

Query: 159 EKLELLNNKCREMNARI-CELKNLVELNLSWNKLDGSLPQ-CLSNLTYLRVLDLTSNQLS 216
            ++ L  N  + +        K L  ++LS N++   L       L  L  L L  N+++
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 217 GNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET 267
             LP S+F  L SL+ L L+ N       +    +   L +L +   +++T
Sbjct: 94  -ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQT 142

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 444 SMTQLAWLYLNDNQFTGRLEEGLLN-APSLHILDVSNNMLSGQLPHWV-GNFSNLDVLLM 501
              +L  + L++NQ +  L         SL+ L +  N ++ +LP  +     +L +LL+
Sbjct: 54  PYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLL 111

Query: 502 SRN---SLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNN 552
           + N    L  D    L NL    +L + +NKL    + +F+   ++  + L  N
Sbjct: 112 NANKINCLRVDAFQDLHNLN---LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 22/137 (16%)

Query: 451 LYLNDNQFTGRLEEGLL-NAPSLHILDVSNNMLSGQLPHWVGNF---SNLDVLLMSRNSL 506
           + L  N     +  G       L  +D+SNN +S +L      F    +L+ L++  N +
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELA--PDAFQGLRSLNSLVLYGNKI 92

Query: 507 EGDVSVP------LSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPS 560
                +P      L +LQ   +L ++ NK+      +F    +L  L L++N L  +I  
Sbjct: 93  T---ELPKSLFEGLFSLQ---LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAK 145

Query: 561 ALFQS-SQLMTLDLRDN 576
             F     + T+ L  N
Sbjct: 146 GTFSPLRAIQTMHLAQN 162

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 14/159 (8%)

Query: 91  KILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGN-- 148
           + L++     +         LT LT L L+ N L        V  +L  L  L L+ N  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT--LSAGVFDDLTELGTLGLANNQL 95

Query: 149 -----GLIGSLTMQGEKLELLNNKCREMNARICE-LKNLVELNLSWNKLDGSLPQ-CLSN 201
                G+   LT Q +KL L  N+ + + + + + L  L EL L+ N+L  S+P      
Sbjct: 96  ASLPLGVFDHLT-QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDK 153

Query: 202 LTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNF 240
           LT L+ L L++NQL  ++P   F  L  L+ ++L GN F
Sbjct: 154 LTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 56.2 bits (136), Expect = 9e-09
 Identities = 44/163 (26%), Positives = 67/163 (41%), Gaps = 25/163 (15%)

Query: 402 LDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPK--YMSMTQLAWLYLNDNQFT 459
           LDL S   +      F  G   L ++N+ +N    Q      +  +T+L  L L +NQ  
Sbjct: 40  LDLQSTGLATLSDATF-RGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQLA 96

Query: 460 GRLEEGLLNAP-SLHILDVSNNMLSGQLPHWVGNF---SNLDVLLMSRNSLEGDVSVP-- 513
             L  G+ +    L  L +  N L   LP  V  F   + L  L ++ N L+   S+P  
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGV--FDRLTKLKELRLNTNQLQ---SIPAG 149

Query: 514 ----LSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNN 552
               L+NLQ    L +S N+L      +F+    L  + L  N
Sbjct: 150 AFDKLTNLQ---TLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 48/185 (25%), Positives = 78/185 (42%), Gaps = 41/185 (22%)

Query: 159 EKLELLNNKCREMNARICE-LKNLVELNLSWNKLDGSLPQ-CLSNLTYLRVLDLTSNQLS 216
           EKL+L +     ++      L  L  LNL +N+L  +L      +LT L  L L +NQL+
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLA 96

Query: 217 GNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPR- 275
            +LP+ VF +LT L+ L L GN  + S    V    ++L+ L+++  Q+++     +P  
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQS-----IPAG 149

Query: 276 -F----QLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFL 330
            F     L+ L+L                           N   + P        KL+ +
Sbjct: 150 AFDKLTNLQTLSL-------------------------STNQLQSVPHGAFDRLGKLQTI 184

Query: 331 FLFNN 335
            LF N
Sbjct: 185 TLFGN 189

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 47/149 (31%), Positives = 68/149 (45%), Gaps = 23/149 (15%)

Query: 91  KILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGL 150
           +IL +  N  ++    +  SL +L  L+L  N LG    P+ V  +L  L VLDL  N  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG--ALPVGVFDSLTQLTVLDLGTN-- 98

Query: 151 IGSLTMQGEKLELLNNKCREMNARICE-LKNLVELNLSWNKLDGSLPQCLSNLTYLRVLD 209
                 Q   L           + + + L +L EL +  NKL   LP+ +  LT+L  L 
Sbjct: 99  ------QLTVLP----------SAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLA 141

Query: 210 LTSNQLSGNLPISVFANLTSLEYLSLSGN 238
           L  NQL  ++P   F  L+SL +  L GN
Sbjct: 142 LDQNQLK-SIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 4/85 (4%)

Query: 159 EKLELLNNKCREMNARICE-LKNLVELNLSWNKLDGSLPQCL-SNLTYLRVLDLTSNQLS 216
           + L L +N+  ++   + + L NL EL L  N+L  +LP  +  +LT L VLDL +NQL+
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 217 GNLPISVFANLTSLEYLSLSGNNFQ 241
             LP +VF  L  L+ L +  N   
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLT 125

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 19/118 (16%)

Query: 444 SMTQLAWLYLNDNQFTGRLEEGLLNA-PSLHILDVSNNMLSGQLPHWVGNF---SNLDVL 499
           S+  L  LYL  NQ    L  G+ ++   L +LD+  N L+  LP     F    +L  L
Sbjct: 62  SLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT-VLP--SAVFDRLVHLKEL 117

Query: 500 LMSRNSLEGDVSVP-----LSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNN 552
            M  N L     +P     L++L     L + +N+L      +F+  SSL H +L  N
Sbjct: 118 FMCCNKLT---ELPRGIERLTHLT---HLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 25/132 (18%)

Query: 112 TSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREM 171
           T+   L+L  N +        V  +L NL+ L L  N L          L          
Sbjct: 40  TNAQILYLHDNQITK--LEPGVFDSLINLKELYLGSNQL--------GALP--------- 80

Query: 172 NARIC-ELKNLVELNLSWNKLDGSLPQ-CLSNLTYLRVLDLTSNQLSGNLPISVFANLTS 229
              +   L  L  L+L  N+L   LP      L +L+ L +  N+L+  LP      LT 
Sbjct: 81  -VGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELP-RGIERLTH 136

Query: 230 LEYLSLSGNNFQ 241
           L +L+L  N  +
Sbjct: 137 LTHLALDQNQLK 148

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 60.9 bits (148), Expect = 6e-10
 Identities = 52/353 (14%), Positives = 103/353 (29%), Gaps = 63/353 (17%)

Query: 93  LNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLG-VGFKPM-KVLP-NLRNLEVLDLSGNG 149
             +  +  S  +    +    +TSL L  NNL  +    + +       ++  L+LSGN 
Sbjct: 3   YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS 62

Query: 150 --------LIGSLTMQGEKLELLN---NKCREMNAR-ICEL-----KNLVELNLSWNKLD 192
                   L+  L      +  LN   N     ++  + +        +  L+L WN   
Sbjct: 63  LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122

Query: 193 GSLPQCLSNL-----TYLRVLDLTSNQLSGNLPISVFANL-----TSLEYLSLSGNNFQG 242
                            +  L+L  N L G         +      ++  L+L GNN   
Sbjct: 123 SKSSSEFKQAFSNLPASITSLNLRGNDL-GIKSSDELIQILAAIPANVNSLNLRGNNL-A 180

Query: 243 SFSLSVLA-----NHSRLEVLQISRLQIETENFPWL------PRFQLKVLNLRRCNISGT 291
           S + + LA       + +  L +S   +  +++  L          +  LNL    + G 
Sbjct: 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240

Query: 292 ----IPSFLQYQYDLRYIDLSHNNLAGTFPTWL------LQNNTKLEFLFLFNNFL--KG 339
               +         L+ + L ++ +                N  K+  +      +    
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300

Query: 340 LLHLPDSKRD----LLHLVISNNNFIGMLPDNFG----MILPELVYLDMSQNS 384
            + + +  R+         + N   I             I  EL     +   
Sbjct: 301 SIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 22/168 (13%), Positives = 55/168 (32%), Gaps = 26/168 (15%)

Query: 88  KQLKILNIGFNSFSESLVPLLTSL-----TSLTSLFLEGNNLG-VGFKPM-KVLPNLRNL 140
             +  L++  N         L  +       + SL L  N L     + +  +  +L++L
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255

Query: 141 EVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLS 200
           + + L  +  + +++ +          C+ + A    ++ ++ ++ +  ++  S    +S
Sbjct: 256 QTVYLDYDI-VKNMSKEQ---------CKALGAAFPNIQKIILVDKNGKEIHPSHSIPIS 305

Query: 201 NL-----TYLRVLDLTSNQL----SGNLPISVFANLTSLEYLSLSGNN 239
           NL         V  L +  L         I        L     +   
Sbjct: 306 NLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 54.3 bits (131), Expect = 9e-08
 Identities = 45/248 (18%), Positives = 76/248 (30%), Gaps = 54/248 (21%)

Query: 88  KQLKILNIGFNSFSESLVPLLTSL-----TSLTSLFLEGNNLG-VGFKPM-KVLPNL-RN 139
             +  LN+  N         L  +      ++ SL L GNNL       + K L ++  +
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 140 LEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGS----L 195
           +  LDLS N  +G  +         +               +V LNL  N L G     L
Sbjct: 198 VTSLDLSANL-LGLKSYAELAYIFSSIPNH-----------VVSLNLCLNCLHGPSLENL 245

Query: 196 PQCLSNLTYLRVLDLTSNQLSGNLP------ISVFANLTSLEYLSLSGNNFQGSFSLSVL 249
                +L +L+ + L  + +            + F N+  +  +  +G     S      
Sbjct: 246 KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS------ 299

Query: 250 ANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNIS-----GTIPSFLQYQYDLRY 304
                   + IS L  E          +  V +L    +       T    L    +LR 
Sbjct: 300 ------HSIPISNLIRE-------LSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRE 346

Query: 305 IDLSHNNL 312
              +   L
Sbjct: 347 SIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 52/335 (15%), Positives = 93/335 (27%), Gaps = 89/335 (26%)

Query: 179 KNLVELNLSWNKLDGSLPQCL-----SNLTYLRVLDLTSNQLSGN----LPISVFANLTS 229
             +  L+LS N L       L     +    +  L+L+ N L       L   + A   +
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 230 LEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNIS 289
           +  L+LSGN      S   L      + L                 F + VL+L   + S
Sbjct: 82  VTSLNLSGNFL-SYKSSDELV-----KTLA-------------AIPFTITVLDLGWNDFS 122

Query: 290 GT-----IPSFLQYQYDLRYIDLSHNNL----AGTFPTWLLQNNTKLEFLFLFNNFLKGL 340
                    +F      +  ++L  N+L    +      L      +  L L  N L   
Sbjct: 123 SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA-- 180

Query: 341 LHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSF--EGSIPPSMG---Y 395
                +  +L   + S                  +  LD+S N    +     +      
Sbjct: 181 ---SKNCAELAKFLASIPAS--------------VTSLDLSANLLGLKSYAELAYIFSSI 223

Query: 396 TVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLND 455
              ++ L+L  N   G           +L  +  S                 L  +YL+ 
Sbjct: 224 PNHVVSLNLCLNCLHGP-------SLENLKLLKDSL--------------KHLQTVYLDY 262

Query: 456 NQFTG-------RLEEGLLNAPSLHILDVSNNMLS 483
           +            L     N   + ++D +   + 
Sbjct: 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 47/333 (14%), Positives = 95/333 (28%), Gaps = 90/333 (27%)

Query: 278 LKVLNLRRCNISGT-----IPSFLQYQYDLRYIDLSHNNL----AGTFPTWLLQNNTKLE 328
           +  L+L   N+        I +F      +  ++LS N+L    +      L      + 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 329 FLFLFNNFL--KGLLH----LPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQ 382
            L L  NFL  K        L      +  L +  N+              +      + 
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND----FSSKSSSEFKQAF---SNL 136

Query: 383 NSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKY 442
            +              +  L+L  N+   +           L  +  +            
Sbjct: 137 PA-------------SITSLNLRGNDLGIK-------SSDELIQILAAIP---------- 166

Query: 443 MSMTQLAWLYLNDNQFTGR----LEEGLLNAP-SLHILDVSNNMLSGQLPHWVGNFSNLD 497
                +  L L  N    +    L + L + P S+  LD+S N+L  +            
Sbjct: 167 ---ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK-----SYAELAY 218

Query: 498 VLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGP----LEFSFNHSSSLWHLFLHNNS 553
           +     N +                L++  N L+GP    L+   +    L  ++L  + 
Sbjct: 219 IFSSIPNHV--------------VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264

Query: 554 LNG-------SIPSALFQSSQLMTLDLRDNEFS 579
           +         ++ +A     +++ +D    E  
Sbjct: 265 VKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 159 EKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCL-SNLTYLRVLDLTSNQLSG 217
            +L L  N+   +   +   K+L  ++LS N++  +L     SN+T L  L L+ N+L  
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNRLR- 91

Query: 218 NLPISVFANLTSLEYLSLSGNNFQ----GSF 244
            +P   F  L SL  LSL GN+      G+F
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGNDISVVPEGAF 122

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 28/137 (20%)

Query: 108 LTSL-----TSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLE 162
           L  L       +T L+L+GN   +     K L N ++L ++DLS N        +   L 
Sbjct: 22  LKVLPKGIPRDVTELYLDGNQFTL---VPKELSNYKHLTLIDLSNN--------RISTLS 70

Query: 163 LLNNKCREMNARICELKNLVELNLSWNKLDGSLPQ-CLSNLTYLRVLDLTSNQLSGNLPI 221
                    N     +  L+ L LS+N+L   +P      L  LR+L L  N +S  +P 
Sbjct: 71  ---------NQSFSNMTQLLTLILSYNRL-RCIPPRTFDGLKSLRLLSLHGNDIS-VVPE 119

Query: 222 SVFANLTSLEYLSLSGN 238
             F +L++L +L++  N
Sbjct: 120 GAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 15/109 (13%)

Query: 451 LYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWV-GNFSNLDVLLMSRNSLEGD 509
           LYL+ NQFT  + + L N   L ++D+SNN +S  L +    N + L  L++S N L   
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR-- 91

Query: 510 VSVP------LSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNN 552
             +P      L +L   R+L +  N +    E +FN  S+L HL +  N
Sbjct: 92  -CIPPRTFDGLKSL---RLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 710 TGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRG 769
           T L L  N+ T  +P  +   + L  ++LS+N +S    +SFSN+  + ++ LSYN+LR 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 770 QIPLELSELNYLAIFNVSYNDLS 792
             P     L  L + ++  ND+S
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 35/133 (26%), Positives = 51/133 (38%), Gaps = 31/133 (23%)

Query: 112 TSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREM 171
              T L L  N LG       +   L +L  L+L  N        Q   +E         
Sbjct: 29  LHTTELLLNDNELGR-ISSDGLFGRLPHLVKLELKRN--------QLTGIE--------- 70

Query: 172 NARICE-LKNLVELNLSWNKLDGSLPQCLSN-----LTYLRVLDLTSNQLSGNLPISVFA 225
                E   ++ EL L  NK+     + +SN     L  L+ L+L  NQ+S  +    F 
Sbjct: 71  -PNAFEGASHIQELQLGENKI-----KEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFE 123

Query: 226 NLTSLEYLSLSGN 238
           +L SL  L+L+ N
Sbjct: 124 HLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 9/93 (9%)

Query: 159 EKLELLNNKCR--EMNARICELKNLVELNLSWNKLDGSLPQCL-SNLTYLRVLDLTSNQL 215
            +L L +N+      +     L +LV+L L  N+L   +        ++++ L L  N++
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKI 90

Query: 216 SGNLPISVFANLTSLEYLSLSGNNFQ----GSF 244
              +   +F  L  L+ L+L  N       GSF
Sbjct: 91  K-EISNKMFLGLHQLKTLNLYDNQISCVMPGSF 122

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 15/113 (13%)

Query: 451 LYLNDNQFTGRLEEGLLNA-PSLHILDVSNNMLSGQLPHWV-GNFSNLDVLLMSRNSLEG 508
           L LNDN+      +GL    P L  L++  N L+G +        S++  L +  N ++ 
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIK- 91

Query: 509 DVSVP------LSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLN 555
              +       L  L+    L++ +N++   +  SF H +SL  L L +N  N
Sbjct: 92  --EISNKMFLGLHQLK---TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.7 bits (136), Expect = 2e-08
 Identities = 27/108 (25%), Positives = 35/108 (32%), Gaps = 18/108 (16%)

Query: 134 LPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDG 193
           LP   NL  L +     +  L      L  L             L  L  L +  + L  
Sbjct: 27  LPGAENLTELYIENQQHLQHLE-----LRDLRG-----------LGELRNLTIVKSGLRF 70

Query: 194 SLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ 241
             P        L  L+L+ N L  +L       L SL+ L LSGN   
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 9/115 (7%)

Query: 176 CELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSL 235
               + +                L     L  L + + Q   +L +     L  L  L++
Sbjct: 7   PHGSSGLRCT---RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI 63

Query: 236 SGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISG 290
             +  +   +        RL  L +S   +E+     L    ++ L+L+   +SG
Sbjct: 64  VKSGLR-FVAPDAFHFTPRLSRLNLSFNALES-----LSWKTVQGLSLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 7/98 (7%)

Query: 388 SIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHN---YFGGQIFPKYMS 444
                +     L  L + +      L  + L G   L  + +  +   +     F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF--- 78

Query: 445 MTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNML 482
             +L+ L L+ N     L    +   SL  L +S N L
Sbjct: 79  TPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 706 LEYMTGLDLSSNELTGEIPS-AIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSY 764
            E +T L + + +    +    +  L EL  L +  + L    P +F     +  ++LS+
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 765 NKLR 768
           N L 
Sbjct: 90  NALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 3e-05
 Identities = 20/131 (15%), Positives = 39/131 (29%), Gaps = 27/131 (20%)

Query: 279 KVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLK 338
            +   R   +       L    +L  + + +           L+   +L  L +  + L+
Sbjct: 12  GLRCTRDGALD--SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 339 GLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVR 398
                           ++ + F            P L  L++S N+ E S+       + 
Sbjct: 70  ---------------FVAPDAFHF---------TPRLSRLNLSFNALE-SLSWKTVQGLS 104

Query: 399 LLFLDLSSNNF 409
           L  L LS N  
Sbjct: 105 LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 6e-04
 Identities = 24/131 (18%), Positives = 40/131 (30%), Gaps = 12/131 (9%)

Query: 513 PLSNLQVARILDISENKLYGPLE-FSFNHSSSLWHLFLHNNSLNGSIPSALFQS-SQLMT 570
              NL     L I   +    LE         L +L +  + L   +    F    +L  
Sbjct: 29  GAENL---TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSR 84

Query: 571 LDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSI 630
           L+L  N    ++     +  +L+ L+L GN L  +     C LR +   +          
Sbjct: 85  LNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCS-----CALRWLQRWEEEGLGGVPEQ 138

Query: 631 PSCFTNIWPWM 641
                   P  
Sbjct: 139 KLQCHGQGPLA 149

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 8e-04
 Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 3/66 (4%)

Query: 86  SLKQLKILNIGFNSFSESLVP-LLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLD 144
             + L  L I      + L    L  L  L +L +  + L   F           L  L+
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--FVAPDAFHFTPRLSRLN 86

Query: 145 LSGNGL 150
           LS N L
Sbjct: 87  LSFNAL 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 8e-04
 Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 710 TGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPR-SFSNLKMIESMDLSYNKLR 768
           +GL  + +    +    +   + L  L + +      +       L  + ++ +  + LR
Sbjct: 11  SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 769 GQIPLE-LSELNYLAIFNVSYNDLSGPTPNT 798
             +  +       L+  N+S+N L   +  T
Sbjct: 70  -FVAPDAFHFTPRLSRLNLSFNALESLSWKT 99

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 48/272 (17%), Positives = 77/272 (28%), Gaps = 45/272 (16%)

Query: 86  SLKQLKILNIGFNSFS-ESLVPLLTSLTSLTSLFLEGNNLG-VGFKPM-KVLP-NLRNLE 141
               L  +N+         L  LL        L L+ N+LG    K +  +L  +   + 
Sbjct: 99  GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQIT 158

Query: 142 VLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLD----GSLPQ 197
            L LS N     LT  G            +   +    ++  L+L    L       L  
Sbjct: 159 TLRLSNN----PLTAAG---------VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205

Query: 198 CLSNLTYLRVLDLTSNQLSGNLPISVFANL----TSLEYLSLSGNNFQG------SFSLS 247
            L     L+ L++  N   G+      A       SLE L L  N               
Sbjct: 206 QLDRNRQLQELNVAYNGA-GDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGG 264

Query: 248 VLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDL 307
                +R+ V       +       L   Q  + +  R  +   +        +L   DL
Sbjct: 265 AAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHL--------ELLLRDL 316

Query: 308 SHNNLAGTFPTW----LLQNNTKLEFLFLFNN 335
             +    T   W    LL+   ++  L     
Sbjct: 317 EDSRG-ATLNPWRKAQLLRVEGEVRALLEQLG 347

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 51.3 bits (123), Expect = 7e-07
 Identities = 52/316 (16%), Positives = 94/316 (29%), Gaps = 63/316 (19%)

Query: 68  SWERIKCNVTTANYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLG-V 126
           + + IK  +           + L  L   +   ++        L+SL  L L G  +  V
Sbjct: 30  NAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFS--AEVLSSLRQLNLAGVRMTPV 87

Query: 127 GFKPM-KVLP-NLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICE-LKNLVE 183
               +  VL      L+ ++L+                 L+         +        +
Sbjct: 88  KCTVVAAVLGSGRHALDEVNLASCQ--------------LDPAGLR---TLLPVFLRARK 130

Query: 184 LNLSWNKLD----GSLPQCL-SNLTYLRVLDLTSNQL--SGNLPIS-VFANLTSLEYLSL 235
           L L  N L       L   L  +   +  L L++N L  +G   +    A  TS+ +LSL
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSL 190

Query: 236 SGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGT---- 291
                 G   L +LA       L  +R              QL+ LN+       T    
Sbjct: 191 LHTGL-GDEGLELLA-----AQLDRNR--------------QLQELNVAYNGAGDTAALA 230

Query: 292 IPSFLQYQYDLRYIDLSHNNLAGTFPTWL------LQNNTKLEFLFLFNNFL--KGLLHL 343
           +    +    L  + L  N L+      L       +   ++         +     + L
Sbjct: 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVIL 290

Query: 344 PDSKRDLLHLVISNNN 359
            + +R+L     +   
Sbjct: 291 SEVQRNLNSWDRARVQ 306

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 48.2 bits (115), Expect = 7e-06
 Identities = 65/405 (16%), Positives = 118/405 (29%), Gaps = 96/405 (23%)

Query: 233 LSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTI 292
           L  + N    +     + N   LE  Q  + ++       LP    ++L+    +     
Sbjct: 6   LLSAHNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLP--PSELLDHLFFHYEFQN 63

Query: 293 PSF-LQYQYDLRYIDLSHNNL----AGTFPTWLLQNNTKLEFLFLFNNFL--KGLLHLPD 345
             F  +    LR ++L+   +           L      L+ + L +  L   GL  L  
Sbjct: 64  QRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP 123

Query: 346 SKRDLLHLVISNNNFIG---------MLPDNFGMILPELVYLDMSQNSFEGS----IPPS 392
                  L +  N+ +G         +L  +      ++  L +S N    +    +   
Sbjct: 124 VFLRARKLGLQLNS-LGPEACKDLRDLLLHD----QCQITTLRLSNNPLTAAGVAVLMEG 178

Query: 393 MGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLY 452
           +     +  L L       E       G   LA   +  N              QL  L 
Sbjct: 179 LAGNTSVTHLSLLHTGLGDE-------GLELLAAQ-LDRN-------------RQLQELN 217

Query: 453 LNDNQFTGR----LEEGLLNAPSLHILDVSNNMLS-------GQLPHWVGNFSNLDVLLM 501
           +  N         L       PSL +L +  N LS         L       + + V L 
Sbjct: 218 VAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLT 277

Query: 502 SRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSA 561
              ++    SV LS +Q                               + NS +    + 
Sbjct: 278 EGTAVSEYWSVILSEVQ------------------------------RNLNSWD---RAR 304

Query: 562 LFQSSQLMTLDLRDNEFSGNIPPLINE----DSNLRALLLRGNNL 602
           + +  +L+  DL D+  +   P    +    +  +RALL +  + 
Sbjct: 305 VQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 51/150 (34%), Positives = 67/150 (44%), Gaps = 24/150 (16%)

Query: 91  KILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGL 150
             L++  NS       +   LTSLT L+L GN L     P  V   L +L  L+LS N  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ--SLPNGVFNKLTSLTYLNLSTN-- 86

Query: 151 IGSLTMQGEKLELLNNKCREMNARICE-LKNLVELNLSWNKLDGSLPQ-CLSNLTYLRVL 208
                 Q + L             + + L  L EL L+ N+L  SLP      LT L+ L
Sbjct: 87  ------QLQSLP----------NGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDL 129

Query: 209 DLTSNQLSGNLPISVFANLTSLEYLSLSGN 238
            L  NQL  ++P  VF  LTSL+Y+ L  N
Sbjct: 130 RLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 44/135 (32%), Positives = 56/135 (41%), Gaps = 30/135 (22%)

Query: 112 TSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREM 171
              T L LE N+L     P  V   L +L  L L GN L        + L          
Sbjct: 28  AQTTYLDLETNSLKS--LPNGVFDELTSLTQLYLGGNKL--------QSLP--------- 68

Query: 172 NARIC-ELKNLVELNLSWNKLDGSLPQ----CLSNLTYLRVLDLTSNQLSGNLPISVFAN 226
              +  +L +L  LNLS N+L  SLP      L+ L  L    L +NQL  +LP  VF  
Sbjct: 69  -NGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKEL---ALNTNQLQ-SLPDGVFDK 122

Query: 227 LTSLEYLSLSGNNFQ 241
           LT L+ L L  N  +
Sbjct: 123 LTQLKDLRLYQNQLK 137

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 4/85 (4%)

Query: 159 EKLELLNNKCREMNARIC-ELKNLVELNLSWNKLDGSLPQ-CLSNLTYLRVLDLTSNQLS 216
            +LEL +NK + +   +  +L  L +L+LS N++  SLP      LT L +L L  N+L 
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ 89

Query: 217 GNLPISVFANLTSLEYLSLSGNNFQ 241
            +LP  VF  LT L+ L+L  N  +
Sbjct: 90  -SLPNGVFDKLTQLKELALDTNQLK 113

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 37/107 (34%), Positives = 51/107 (47%), Gaps = 12/107 (11%)

Query: 141 EVLDLSGN-------GLIGSLTMQGEKLELLNNKCREMNARIC-ELKNLVELNLSWNKLD 192
             L+L  N       G+   LT Q  KL L  N+ + +   +  +L  L  L L  NKL 
Sbjct: 31  TRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89

Query: 193 GSLPQ-CLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGN 238
            SLP      LT L+ L L +NQL  ++P  +F  LTSL+ + L  N
Sbjct: 90  -SLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 20/112 (17%)

Query: 451 LYLNDNQFTGRLEEGLLNA-PSLHILDVSNNMLSGQLPHWVGNF---SNLDVLLMSRNSL 506
           L L  N+    L  G+ +    L  L +S N +   LP  V  F   + L +L +  N L
Sbjct: 33  LELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGV--FDKLTKLTILYLHENKL 88

Query: 507 EGDVSVP------LSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNN 552
           +   S+P      L+ L+    L +  N+L    +  F+  +SL  ++LH N
Sbjct: 89  Q---SLPNGVFDKLTQLK---ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 178 LKNLVELNLSWNKLDGSLPQ-CLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLS 236
           L NL +L  + NKL  ++P      LT L  LDL  N L  ++P   F NL SL ++ L 
Sbjct: 56  LVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLY 113

Query: 237 GN 238
            N
Sbjct: 114 NN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 183 ELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGN 238
            L L+ N++    P    +L  L+ L   SN+L+  +P  VF  LT L  L L+ N
Sbjct: 37  RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDN 91

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 159 EKLELLNNKCREMNARIC-ELKNLVELNLSWNKLDGSLPQ-CLSNLTYLRVLDLTSNQLS 216
           + L L +N+  ++   +   L  L  L+L  N+L   LP      LT L  L L  NQL 
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK 91

Query: 217 GNLPISVFANLTSLEYLSLSGN 238
            ++P   F NL SL ++ L  N
Sbjct: 92  -SIPRGAFDNLKSLTHIWLLNN 112

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 2e-05
 Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 17/162 (10%)

Query: 85  GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLD 144
            ++  L  L I   +          +L SL  +     +  V       LPNL  L  L 
Sbjct: 169 DAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLV-LY 227

Query: 145 LSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSN--- 201
           +          M   +     ++            NL  L +   +    + +       
Sbjct: 228 VGVEDYGFDGDMNVFRPLFSKDRF----------PNLKWLGIVDAEEQNVVVEMFLESDI 277

Query: 202 LTYLRVLDLTSNQLS---GNLPISVFANLTSLEYLSLSGNNF 240
           L  L  +D+++  L+     L +     +  L+++++  N  
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 42.5 bits (100), Expect = 6e-05
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 194 SLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ 241
           SLP           L LT N L+  LP  +   L +L    L  N ++
Sbjct: 24  SLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 22/148 (14%), Positives = 43/148 (29%), Gaps = 27/148 (18%)

Query: 82  NNNGSLKQLKILNIGFNSFSE----SLVPLLTSLTSLTSLFLEGNNLG-VGFKPM-KVLP 135
           NN+  L+++ + NI   +       +    L + T +    + G          + ++L 
Sbjct: 33  NNDPDLEEVNLNNI--MNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK 90

Query: 136 NLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLD--- 192
               L+ L++  N  I    +      L +N              L+EL +         
Sbjct: 91  VNNTLKSLNVESNF-ISGSGILALVEALQSNTS------------LIELRIDNQSQPLGN 137

Query: 193 ---GSLPQCLSNLTYLRVLDLTSNQLSG 217
                +   L   T L        Q   
Sbjct: 138 NVEMEIANMLEKNTTLLKFGYHFTQQGP 165

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	883
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.98
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.75
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.57
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.54
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.49
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.48
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.48
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.44
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.43
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.43
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.33
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.25
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.2
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.19
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.18
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.17
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.16
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.94
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.91
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.87
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.74
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.43
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.4
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.34
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.31
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.63
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.53
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.01
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.96
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.93
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.84

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.2e-93  Score=868.16  Aligned_cols=717  Identities=31%  Similarity=0.412  Sum_probs=573.1

Q ss_pred             CCcHHHHHHHHHhhhcCCcCCcccccCCccCCCCCCCCCCCCccceeecCCCCCCCCCCcCCCCCCEEECCCCCCCCC--
Q 041908           26 SCLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCSWERIKCNVTTANYNNNGSLKQLKILNIGFNSFSES--  103 (883)
Q Consensus        26 ~c~~~~~~all~~k~~~~~~~~~~~~~~~l~sW~~~~~~~cc~w~gv~C~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~--  103 (883)
                      .+.++||+|||+||+++.++      . .+++|.  .+++||+|+||+|+  ++         +++.|||+++.+.|.  
T Consensus         8 ~~~~~~~~all~~k~~~~~~------~-~l~~W~--~~~~~C~w~gv~C~--~~---------~v~~L~L~~~~l~g~~~   67 (768)
T 3rgz_A            8 QSLYREIHQLISFKDVLPDK------N-LLPDWS--SNKNPCTFDGVTCR--DD---------KVTSIDLSSKPLNVGFS   67 (768)
T ss_dssp             CCHHHHHHHHHHHHTTCSCT------T-SSTTCC--TTSCGGGSTTEEEE--TT---------EEEEEECTTSCCCEEHH
T ss_pred             cCCHHHHHHHHHHHhhCCCc------c-cccCCC--CCCCCcCCcceEEC--CC---------cEEEEECCCCCcCCccC
Confidence            45789999999999999632      4 789994  35799999999998  22         799999999999998  


Q ss_pred             -CchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccchhh--hhcCCCC
Q 041908          104 -LVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNA--RICELKN  180 (883)
Q Consensus       104 -~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~--~l~~l~~  180 (883)
                       +++.+.++++|+.++++.+.+..  +| +.++++++|++|||++|.+.|.+|                 .  .++++++
T Consensus        68 ~l~~~l~~L~~L~~l~~~~~~~~~--l~-~~~~~l~~L~~L~Ls~n~l~~~~~-----------------~~~~l~~l~~  127 (768)
T 3rgz_A           68 AVSSSLLSLTGLESLFLSNSHING--SV-SGFKCSASLTSLDLSRNSLSGPVT-----------------TLTSLGSCSG  127 (768)
T ss_dssp             HHHHHTTTCTTCCEEECTTSCEEE--CC-CCCCCCTTCCEEECCSSEEEEEGG-----------------GGGGGGGCTT
T ss_pred             ccChhHhccCcccccCCcCCCcCC--Cc-hhhccCCCCCEEECCCCcCCCcCC-----------------ChHHHhCCCC
Confidence             89999999999999999998754  55 589999999999999999998887                 5  7899999


Q ss_pred             CCEEEccCCcCCCCCCccc-cCCCCCCEEEccCCccccccChhh---hcCCCCCCEEeccCCcCccccChHhhhcCCCCc
Q 041908          181 LVELNLSWNKLDGSLPQCL-SNLTYLRVLDLTSNQLSGNLPISV---FANLTSLEYLSLSGNNFQGSFSLSVLANHSRLE  256 (883)
Q Consensus       181 L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~ip~~~---~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~  256 (883)
                      |++|+|++|.+++.+|..+ .++++|++||+++|++++..| ..   ++++++|++|++++|.+++.++.   .++++|+
T Consensus       128 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~  203 (768)
T 3rgz_A          128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV-VGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLE  203 (768)
T ss_dssp             CCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETH-HHHHHTTCCTTCCEEECCSSEEESCCBC---TTCTTCC
T ss_pred             CCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCC-hhhhhhccCCCCCEEECCCCcccccCCc---ccCCcCC
Confidence            9999999999998888776 899999999999999997666 44   78999999999999999876653   5666666


Q ss_pred             EEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEccccc
Q 041908          257 VLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNF  336 (883)
Q Consensus       257 ~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~  336 (883)
                      +|++++|.+                       .+.+|. ++.+++|++|++++|.+++.+|..+. ++++|++|++++|.
T Consensus       204 ~L~Ls~n~l-----------------------~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~  258 (768)
T 3rgz_A          204 FLDVSSNNF-----------------------STGIPF-LGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQ  258 (768)
T ss_dssp             EEECCSSCC-----------------------CSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTT-TCSSCCEEECCSSC
T ss_pred             EEECcCCcC-----------------------CCCCcc-cccCCCCCEEECcCCcCCCcccHHHh-cCCCCCEEECCCCc
Confidence            666555554                       444444 55555555555555555555554443 55555555555555


Q ss_pred             ccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchh
Q 041908          337 LKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQ  416 (883)
Q Consensus       337 l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~  416 (883)
                      +.+..+.. .+++|++|++++|.+.+.+|..++..+++|++|++++|.+++.+|..++.+++|++|++++|.++|.+|..
T Consensus       259 l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~  337 (768)
T 3rgz_A          259 FVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD  337 (768)
T ss_dssp             CEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH
T ss_pred             ccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHH
Confidence            55433222 56777888888888888888887665688999999999888888888888899999999999888888888


Q ss_pred             HhhCCCCCCEEEccCcccCCcCcccccCCC-CCCeEEccCcccCccccccccC--CCCCCEEEccCCccCCCcchhhhCC
Q 041908          417 FLTGCVSLAFMNVSHNYFGGQIFPKYMSMT-QLAWLYLNDNQFTGRLEEGLLN--APSLHILDVSNNMLSGQLPHWVGNF  493 (883)
Q Consensus       417 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~ls~n~l~~~~p~~~~~l  493 (883)
                      .+..+++|++|++++|.+++.+|..+..++ +|++|++++|++++.+|..+..  +++|++|++++|.+++.+|..++++
T Consensus       338 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l  417 (768)
T 3rgz_A          338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC  417 (768)
T ss_dssp             HHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC
T ss_pred             HHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC
Confidence            677888999999999988888888888887 8999999999988888877766  7789999999999988888889999


Q ss_pred             CCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEec
Q 041908          494 SNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDL  573 (883)
Q Consensus       494 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L  573 (883)
                      ++|++|++++|++++.+|..+..+++|+.|++++|++.+.+|..+..+++|++|++++|++++.+|..+.++++|++|++
T Consensus       418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  497 (768)
T 3rgz_A          418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL  497 (768)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence            99999999999998888888989999999999999998888888888889999999999999888988999999999999


Q ss_pred             cCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccc
Q 041908          574 RDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFG  653 (883)
Q Consensus       574 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~  653 (883)
                      ++|++++.+|.+++.+++|++|++++|+++|.+|..++.+++|+.||+++|+++|.+|.++............. +....
T Consensus       498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~-~~~~~  576 (768)
T 3rgz_A          498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA-GKRYV  576 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC-SCEEE
T ss_pred             cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccc-ccccc
Confidence            99999988999999999999999999999999999999999999999999999999998776654322111000 00000


Q ss_pred             ----------------cccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCC
Q 041908          654 ----------------YTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSN  717 (883)
Q Consensus       654 ----------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N  717 (883)
                                      ...+.+..+.   ...........     .+.. ....    +.. ....+.+++|+.||||+|
T Consensus       577 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~-----~l~~-~~~~----g~~-~~~~~~l~~L~~LdLs~N  642 (768)
T 3rgz_A          577 YIKNDGMKKECHGAGNLLEFQGIRSE---QLNRLSTRNPC-----NITS-RVYG----GHT-SPTFDNNGSMMFLDMSYN  642 (768)
T ss_dssp             EEECCSCCTTCCSSEEEEECTTCCGG---GGGGGGGTCCS-----CTTS-CEEE----EEC-CCSCSSSBCCCEEECCSS
T ss_pred             ccccccccccccccccccccccccch---hhhcccccccc-----cccc-ceec----ccC-chhhhccccccEEECcCC
Confidence                            0000000000   00000000000     0000 0000    000 001134688999999999


Q ss_pred             cCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCC
Q 041908          718 ELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPN  797 (883)
Q Consensus       718 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~  797 (883)
                      +++|.||.+|+++++|++|+||+|+++|.||..++++++|++||||+|+++|.||.++.++++|++||+|+|+|+|+||.
T Consensus       643 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred             cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCCcccCCCcCCCCCCCCCCCCCCC
Q 041908          798 TKQFANFDESNYRGNLNLCGPAVLKNCSTDL  828 (883)
Q Consensus       798 ~~~~~~~~~~~~~gn~~lc~~~~~~~c~~~~  828 (883)
                      ++||.+|.+.+|.|||++||+|+. .|....
T Consensus       723 ~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~  752 (768)
T 3rgz_A          723 MGQFETFPPAKFLNNPGLCGYPLP-RCDPSN  752 (768)
T ss_dssp             SSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred             chhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence            999999999999999999999986 897544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.3e-74  Score=696.84  Aligned_cols=615  Identities=30%  Similarity=0.405  Sum_probs=453.6

Q ss_pred             CCCcCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCccccccc
Q 041908           82 NNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMK--VLPNLRNLEVLDLSGNGLIGSLTMQGE  159 (883)
Q Consensus        82 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~--~l~~l~~L~~L~Ls~n~l~~~~~~~l~  159 (883)
                      ++++++++|+.++++.+.+.. +|+.++++++|++|+|++|.+.+. +| .  .++++++|++|||++|.+.+.+|    
T Consensus        71 ~~l~~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~-~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~----  143 (768)
T 3rgz_A           71 SSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGP-VT-TLTSLGSCSGLKFLNVSSNTLDFPGK----  143 (768)
T ss_dssp             HHTTTCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEE-GG-GGGGGGGCTTCCEEECCSSEEECCSS----
T ss_pred             hhHhccCcccccCCcCCCcCC-CchhhccCCCCCEEECCCCcCCCc-CC-ChHHHhCCCCCCEEECcCCccCCcCC----
Confidence            456677777777777776532 456788888888888888888765 55 3  67888888888888888776665    


Q ss_pred             cchhhcccccchhhhh-cCCCCCCEEEccCCcCCCCCCcc---ccCCCCCCEEEccCCccccccChhhhcCCCCCCEEec
Q 041908          160 KLELLNNKCREMNARI-CELKNLVELNLSWNKLDGSLPQC---LSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSL  235 (883)
Q Consensus       160 ~L~~~~n~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L  235 (883)
                                   ..+ .++++|++|+|++|++++..|..   +.++++|++|++++|.+++.+|   +.++++|++|++
T Consensus       144 -------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~L  207 (768)
T 3rgz_A          144 -------------VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDV  207 (768)
T ss_dssp             -------------CCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEEC
T ss_pred             -------------HHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cccCCcCCEEEC
Confidence                         333 56677777777777777666655   6667777777777777765554   366777777777


Q ss_pred             cCCcCccccChHhhhcCCCCcEEEccCcccccCC-CCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcC
Q 041908          236 SGNNFQGSFSLSVLANHSRLEVLQISRLQIETEN-FPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAG  314 (883)
Q Consensus       236 ~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  314 (883)
                      ++|.+++.++.  ++++++|++|++++|.+.... ..+..+++|++|++++|.+.+.+|..  .+++|++|++++|.++|
T Consensus       208 s~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~  283 (768)
T 3rgz_A          208 SSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG  283 (768)
T ss_dssp             CSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEE
T ss_pred             cCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCC
Confidence            77777665553  667777777777777665432 23445566777777777776666654  66777777777777777


Q ss_pred             CcchHHHhcCCCCcEEEcccccccccc-cCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccc
Q 041908          315 TFPTWLLQNNTKLEFLFLFNNFLKGLL-HLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSM  393 (883)
Q Consensus       315 ~~p~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l  393 (883)
                      .+|..++..+++|++|++++|.+++.. .....+++|++|++++|.+.+.+|......+++|++|++++|.+++.+|..+
T Consensus       284 ~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l  363 (768)
T 3rgz_A          284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL  363 (768)
T ss_dssp             SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH
T ss_pred             ccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHH
Confidence            777666544577777777777766432 2234567777777777777777776533347777777777777777777777


Q ss_pred             cccC-cccEEeccCCcccCccchhHhhC-CCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCC
Q 041908          394 GYTV-RLLFLDLSSNNFSGELPKQFLTG-CVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPS  471 (883)
Q Consensus       394 ~~l~-~L~~L~Ls~n~l~~~ip~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  471 (883)
                      ..++ +|++|++++|.+++.+|..+... +++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++
T Consensus       364 ~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  443 (768)
T 3rgz_A          364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK  443 (768)
T ss_dssp             HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             HhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCC
Confidence            7766 77777777777776666654321 566777777777777777777777777777777777777777777777777


Q ss_pred             CCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeeccc
Q 041908          472 LHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHN  551 (883)
Q Consensus       472 L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~  551 (883)
                      |++|++++|.+++.+|..+..+++|++|++++|++++.+|..+.++++|++|++++|++++.+|.++..+++|++|++++
T Consensus       444 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  523 (768)
T 3rgz_A          444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN  523 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred             CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCC
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCC----------------------------------------
Q 041908          552 NSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSN----------------------------------------  591 (883)
Q Consensus       552 n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~----------------------------------------  591 (883)
                      |+++|.+|..+.++++|+.|++++|+++|.+|..+.....                                        
T Consensus       524 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  603 (768)
T 3rgz_A          524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ  603 (768)
T ss_dssp             SCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGG
T ss_pred             CcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchh
Confidence            7777777777777777777777777777777766554433                                        


Q ss_pred             ------CcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchh
Q 041908          592 ------LRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAIS  665 (883)
Q Consensus       592 ------L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  665 (883)
                            ++.++++.|.+.|.+|..+..+++|+.||+++|+++|.+|..+++                             
T Consensus       604 ~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~-----------------------------  654 (768)
T 3rgz_A          604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-----------------------------  654 (768)
T ss_dssp             GGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG-----------------------------
T ss_pred             hhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc-----------------------------
Confidence                  334455668899999999999999999999999999999987754                             


Q ss_pred             hhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCc
Q 041908          666 AYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSG  745 (883)
Q Consensus       666 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  745 (883)
                                                              ++.|+.||||+|+++|.||.+|+++++|++||||+|+++|
T Consensus       655 ----------------------------------------l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g  694 (768)
T 3rgz_A          655 ----------------------------------------MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG  694 (768)
T ss_dssp             ----------------------------------------CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred             ----------------------------------------cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence                                                    4678999999999999999999999999999999999999


Q ss_pred             CCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCc-Ccc
Q 041908          746 SIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYND-LSG  793 (883)
Q Consensus       746 ~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~-l~g  793 (883)
                      .||..++++++|++||||+|+++|.||.. ..+..+....+.+|+ |+|
T Consensus       695 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg  742 (768)
T 3rgz_A          695 RIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG  742 (768)
T ss_dssp             CCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred             cCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcC
Confidence            99999999999999999999999999975 344555666677885 666

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.2e-60  Score=574.20  Aligned_cols=601  Identities=22%  Similarity=0.198  Sum_probs=441.6

Q ss_pred             CccceeecCCCCC--CCCCCcCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEE
Q 041908           67 CSWERIKCNVTTA--NYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLD  144 (883)
Q Consensus        67 c~w~gv~C~~~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~  144 (883)
                      |.++.|.|....-  -+..+.  +++++|+|++|.+.+..+..|.++++|++|+|++|.+.+  +++..++++++|++|+
T Consensus         4 ~~~~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~   79 (680)
T 1ziw_A            4 VSHEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK--LEPELCQKLPMLKVLN   79 (680)
T ss_dssp             CBSSEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC--CCTTHHHHCTTCCEEE
T ss_pred             eECCeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc--cCHHHHhcccCcCEEE
Confidence            5566677764322  122232  688888888888888777788888888888888888877  4436788888888888


Q ss_pred             CCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhh
Q 041908          145 LSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVF  224 (883)
Q Consensus       145 Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~  224 (883)
                      |++|.+.+..+                 ..++++++|++|+|++|++++..|..|+++++|++|++++|.+++..| ..+
T Consensus        80 L~~n~l~~l~~-----------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~  141 (680)
T 1ziw_A           80 LQHNELSQLSD-----------------KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL-GTQ  141 (680)
T ss_dssp             CCSSCCCCCCT-----------------TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC-CSS
T ss_pred             CCCCccCccCh-----------------hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc-hhh
Confidence            88888765433                 457888888888888888887777788888888888888888885555 677


Q ss_pred             cCCCCCCEEeccCCcCccccChHhhhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCE
Q 041908          225 ANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRY  304 (883)
Q Consensus       225 ~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  304 (883)
                      +++++|++|++++|.+++. +...+...                     ...+|++|++++|.+.+..|..+..+.+|+.
T Consensus       142 ~~l~~L~~L~L~~n~l~~~-~~~~~~~~---------------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  199 (680)
T 1ziw_A          142 VQLENLQELLLSNNKIQAL-KSEELDIF---------------------ANSSLKKLELSSNQIKEFSPGCFHAIGRLFG  199 (680)
T ss_dssp             SCCTTCCEEECCSSCCCCB-CHHHHGGG---------------------TTCEESEEECTTCCCCCBCTTGGGGSSEECE
T ss_pred             cccccCCEEEccCCccccc-CHHHhhcc---------------------ccccccEEECCCCcccccChhhhhhhhhhhh
Confidence            8888888888888888743 33333211                     1234566666777777777777788888888


Q ss_pred             EEccCCCCcCCcchHHHh--cCCCCcEEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCC--CCcEEeC
Q 041908          305 IDLSHNNLAGTFPTWLLQ--NNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILP--ELVYLDM  380 (883)
Q Consensus       305 L~Ls~n~l~~~~p~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~--~L~~L~L  380 (883)
                      ++++++.+.+.....+..  ..++|+.|++++|.                       +.+..|..+.. ++  +|++|++
T Consensus       200 L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~-----------------------l~~~~~~~~~~-l~~~~L~~L~L  255 (680)
T 1ziw_A          200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-----------------------LSTTSNTTFLG-LKWTNLTMLDL  255 (680)
T ss_dssp             EECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC-----------------------CCEECTTTTGG-GGGSCCCEEEC
T ss_pred             hhccccccChhhHHHHHHHhhhccccEEEccCCc-----------------------ccccChhHhhc-cCcCCCCEEEC
Confidence            888887765332222211  22445555555444                       44444444432 22  2555555


Q ss_pred             CCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCc-----Cc----ccccCCCCCCeE
Q 041908          381 SQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQ-----IF----PKYMSMTQLAWL  451 (883)
Q Consensus       381 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~-----~~----~~~~~l~~L~~L  451 (883)
                      ++|.+++..|..++.+++|++|++++|.+.+..|.. +.++++|+.|++++|...+.     +|    ..+..+++|++|
T Consensus       256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L  334 (680)
T 1ziw_A          256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL  334 (680)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT-TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred             CCCCcCccCcccccCcccccEeeCCCCccCccChhh-hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence            555555555555555555555555555555333332 34555555555555443321     12    256678888888


Q ss_pred             EccCcccCccccccccCCCCCCEEEccCCccCCCc--chhhhC--CCCCCEEECCCCcCCCCCCccccCCCcccEEecCC
Q 041908          452 YLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQL--PHWVGN--FSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISE  527 (883)
Q Consensus       452 ~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~--p~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  527 (883)
                      ++++|++++..+..+..+++|++|++++|.+....  +..+..  .++|++|++++|++++..|..+..+++|+.|++++
T Consensus       335 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  414 (680)
T 1ziw_A          335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL  414 (680)
T ss_dssp             ECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCC
Confidence            88888888888888888888999998888764322  122332  35899999999999988888899999999999999


Q ss_pred             CcCcCccc-cccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCC--ccCCccccCCCCCcEEEccCCcccc
Q 041908          528 NKLYGPLE-FSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFS--GNIPPLINEDSNLRALLLRGNNLQG  604 (883)
Q Consensus       528 n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~g  604 (883)
                      |.+.+.+| ..+..+++|++|++++|++++..+..+..+++|+.|++++|.++  +.+|..+..+++|++|++++|++++
T Consensus       415 N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~  494 (680)
T 1ziw_A          415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN  494 (680)
T ss_dssp             SCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC
T ss_pred             CcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCc
Confidence            99987665 57888999999999999998888888999999999999999987  5788899999999999999999998


Q ss_pred             cCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhh
Q 041908          605 NIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNREL  684 (883)
Q Consensus       605 ~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  684 (883)
                      ..|..+..+++|+.|++++|++++..+..+....                           .                  
T Consensus       495 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~---------------------------~------------------  529 (680)
T 1ziw_A          495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGP---------------------------I------------------  529 (680)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC---------------------------C------------------
T ss_pred             CChhhhccccccCEEeCCCCCccccchhhccCCc---------------------------c------------------
Confidence            7788899999999999999998754322211000                           0                  


Q ss_pred             cceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCC
Q 041908          685 RQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSY  764 (883)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~  764 (883)
                                      .....+++|+.|||++|+++...+..|+++++|+.|+|++|++++..|..|.++++|+.|||++
T Consensus       530 ----------------~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~  593 (680)
T 1ziw_A          530 ----------------YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK  593 (680)
T ss_dssp             ----------------CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             ----------------hhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCC
Confidence                            0002267899999999999944445699999999999999999988888899999999999999


Q ss_pred             CcccccCCcccc-CCCCCcEEEccCCcCcccCCC
Q 041908          765 NKLRGQIPLELS-ELNYLAIFNVSYNDLSGPTPN  797 (883)
Q Consensus       765 N~Lsg~ip~~l~-~l~~L~~l~ls~N~l~g~ip~  797 (883)
                      |++++.+|..+. .+++|+.+++++|++.|.++.
T Consensus       594 N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          594 NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             SCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            999998888887 789999999999999999986

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=5.6e-59  Score=559.55  Aligned_cols=588  Identities=21%  Similarity=0.184  Sum_probs=435.3

Q ss_pred             CEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccc
Q 041908           91 KILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCRE  170 (883)
Q Consensus        91 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~  170 (883)
                      +.+|.+++++.. +|..+.  +++++|+|++|.+++  +|...|+++++|++|||++|.+.+..|               
T Consensus         7 ~~~~cs~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------------   66 (680)
T 1ziw_A            7 EVADCSHLKLTQ-VPDDLP--TNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTISKLEP---------------   66 (680)
T ss_dssp             SEEECCSSCCSS-CCSCSC--TTCSEEECCSSCCCC--CCGGGGGGGTTCSEEECCSSCCCCCCT---------------
T ss_pred             CeeECCCCCccc-cccccC--CCCcEEECCCCCCCC--cCHHHHhCCCcCcEEECCCCccCccCH---------------
Confidence            356666666543 343332  456666666666554  443445555666666666655555444               


Q ss_pred             hhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhh
Q 041908          171 MNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLA  250 (883)
Q Consensus       171 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~  250 (883)
                        ..+.++++|++|+|++|++++..+..|+++++|++|++++|+++ .+|...|+++++|++|++++|.+++..+ ..+.
T Consensus        67 --~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~  142 (680)
T 1ziw_A           67 --ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKL-GTQV  142 (680)
T ss_dssp             --THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCC-CSSS
T ss_pred             --HHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCc-hhhc
Confidence              44555555566666555555433334555555555555555555 3332455555555555555555543222 1222


Q ss_pred             cCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhh--cCCCCCEEEccCCCCcCCcchHHHhcCCCCc
Q 041908          251 NHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQ--YQYDLRYIDLSHNNLAGTFPTWLLQNNTKLE  328 (883)
Q Consensus       251 ~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~  328 (883)
                      +                       +.+|++|++++|.+++..+..+.  .+++|++|++++|.+++..|..+ ..+++|+
T Consensus       143 ~-----------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~  198 (680)
T 1ziw_A          143 Q-----------------------LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF-HAIGRLF  198 (680)
T ss_dssp             C-----------------------CTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGG-GGSSEEC
T ss_pred             c-----------------------cccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhh-hhhhhhh
Confidence            2                       33444555555555555555543  34667777777777665444433 2455555


Q ss_pred             EEEcccccccccccCCCCCCCccEEEccCCccccccchhhh--cCCCCCcEEeCCCCcCCCCCCccccccCc--ccEEec
Q 041908          329 FLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFG--MILPELVYLDMSQNSFEGSIPPSMGYTVR--LLFLDL  404 (883)
Q Consensus       329 ~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~L  404 (883)
                      .|++.                       ++.+.+.....+.  ...++|+.|++++|.+++..|..+..++.  |++|++
T Consensus       199 ~L~l~-----------------------~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L  255 (680)
T 1ziw_A          199 GLFLN-----------------------NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL  255 (680)
T ss_dssp             EEECT-----------------------TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred             hhhcc-----------------------ccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence            55544                       4444322222211  02579999999999999998999988865  999999


Q ss_pred             cCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCc-----cccc----cccCCCCCCEE
Q 041908          405 SSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTG-----RLEE----GLLNAPSLHIL  475 (883)
Q Consensus       405 s~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~----~~~~l~~L~~L  475 (883)
                      ++|.+.+..|. .+..+++|++|++++|.+.+..+..+..+++|++|++++|...+     .+|.    .+..+++|++|
T Consensus       256 s~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L  334 (680)
T 1ziw_A          256 SYNNLNVVGND-SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL  334 (680)
T ss_dssp             TTSCCCEECTT-TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred             CCCCcCccCcc-cccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence            99999854444 45789999999999999999999999999999999999886554     2332    67889999999


Q ss_pred             EccCCccCCCcchhhhCCCCCCEEECCCCcCCCCC--CccccC--CCcccEEecCCCcCcCccccccccCCCcCeeeccc
Q 041908          476 DVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDV--SVPLSN--LQVARILDISENKLYGPLEFSFNHSSSLWHLFLHN  551 (883)
Q Consensus       476 ~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~--l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~  551 (883)
                      ++++|.+.+..|..+.++++|++|++++|.++...  ...+..  .++|+.|++++|++++..|..+..+++|+.|++++
T Consensus       335 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  414 (680)
T 1ziw_A          335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL  414 (680)
T ss_dssp             ECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCC
Confidence            99999999988999999999999999999865432  223333  35899999999999999999999999999999999


Q ss_pred             Cccccccc-hhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCccc--ccCchhhcCCCCCCEEEcCCCcCCC
Q 041908          552 NSLNGSIP-SALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQ--GNIPQQLCHLRKIAIVDISYNLLDG  628 (883)
Q Consensus       552 n~l~~~~p-~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~--g~~p~~l~~l~~L~~L~ls~N~l~~  628 (883)
                      |.+++.+| ..+.++++|++|++++|++++..+..+..+++|++|++++|.+.  +.+|..+..+++|+.|++++|++++
T Consensus       415 N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~  494 (680)
T 1ziw_A          415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN  494 (680)
T ss_dssp             SCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC
T ss_pred             CcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCc
Confidence            99998776 68899999999999999999999999999999999999999987  6789999999999999999999987


Q ss_pred             CCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccccccccccccc
Q 041908          629 SIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEY  708 (883)
Q Consensus       629 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  708 (883)
                      ..|..+..                                                                     +++
T Consensus       495 i~~~~~~~---------------------------------------------------------------------l~~  505 (680)
T 1ziw_A          495 INDDMLEG---------------------------------------------------------------------LEK  505 (680)
T ss_dssp             CCTTTTTT---------------------------------------------------------------------CTT
T ss_pred             CChhhhcc---------------------------------------------------------------------ccc
Confidence            66654432                                                                     567


Q ss_pred             ccEEEccCCcCcccCc--------ccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCC
Q 041908          709 MTGLDLSSNELTGEIP--------SAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNY  780 (883)
Q Consensus       709 L~~LdLs~N~l~g~ip--------~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~  780 (883)
                      |+.|||++|++++..+        ..++++++|++|+|++|+++...+..|+++++|+.|||++|++++..|..+.++++
T Consensus       506 L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~  585 (680)
T 1ziw_A          506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS  585 (680)
T ss_dssp             CCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCC
Confidence            8999999999986522        24789999999999999999655567999999999999999999877788899999


Q ss_pred             CcEEEccCCcCcccCCCCc--cCCCCCCcccCCCcCCCCCC
Q 041908          781 LAIFNVSYNDLSGPTPNTK--QFANFDESNYRGNLNLCGPA  819 (883)
Q Consensus       781 L~~l~ls~N~l~g~ip~~~--~~~~~~~~~~~gn~~lc~~~  819 (883)
                      |+.|++++|++++..|...  .+..+....+.|||..|..+
T Consensus       586 L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          586 LKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            9999999999999777542  46666777889999999654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.4e-56  Score=528.08  Aligned_cols=542  Identities=22%  Similarity=0.190  Sum_probs=398.7

Q ss_pred             CEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccc
Q 041908           91 KILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCRE  170 (883)
Q Consensus        91 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~  170 (883)
                      ++++.++.++.. +|..+..  .+++|+|++|.+++  +++..|+++++|++|+|++|.+.+..|               
T Consensus        15 ~~~~c~~~~l~~-iP~~l~~--~l~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~---------------   74 (606)
T 3t6q_A           15 KTYNCENLGLNE-IPGTLPN--STECLEFSFNVLPT--IQNTTFSRLINLTFLDLTRCQIYWIHE---------------   74 (606)
T ss_dssp             TEEECTTSCCSS-CCTTSCT--TCCEEECTTCCCSE--ECTTTSTTCTTCSEEECTTCCCCEECT---------------
T ss_pred             ceEECCCCCccc-CcCCCCC--cCcEEEccCCccCc--CChhHhccCccceEEECCCCccceeCh---------------
Confidence            467888777654 4555543  67888888888876  544678888888888888887766555               


Q ss_pred             hhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhh
Q 041908          171 MNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLA  250 (883)
Q Consensus       171 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~  250 (883)
                        ..+.++++|++|+|++|++++..|..|+++++|++|++++|+++ .++...++++++|++|++++|++++ ++.    
T Consensus        75 --~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~-~~~----  146 (606)
T 3t6q_A           75 --DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISS-IKL----  146 (606)
T ss_dssp             --TTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCC-CCC----
T ss_pred             --hhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcc-cCCcchhccCCcccEEECCCCcccc-cCc----
Confidence              66777788888888888877777777777888888888888777 4432567777777777777777663 111    


Q ss_pred             cCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCC--EEEccCCCCcCCcchHHHhcCCCCc
Q 041908          251 NHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLR--YIDLSHNNLAGTFPTWLLQNNTKLE  328 (883)
Q Consensus       251 ~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~Ls~n~l~~~~p~~~~~~l~~L~  328 (883)
                                         +....+.+|++|++++|.+++..|..+..+++|+  .|++++|.+++..|..+  ...+  
T Consensus       147 -------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~--~~~~--  203 (606)
T 3t6q_A          147 -------------------PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF--DSAV--  203 (606)
T ss_dssp             -------------------CTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT--TTCE--
T ss_pred             -------------------ccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHh--hhcc--
Confidence                               1112233455555666666666666677777777  67777777764444332  2233  


Q ss_pred             EEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCc
Q 041908          329 FLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNN  408 (883)
Q Consensus       329 ~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  408 (883)
                                           |++|++++|.   .++..+.. +..++...+.-..+.           .+...      
T Consensus       204 ---------------------L~~L~l~~~~---~~~~~~~~-l~~~~l~~l~~~~~~-----------~~~~~------  241 (606)
T 3t6q_A          204 ---------------------FQSLNFGGTQ---NLLVIFKG-LKNSTIQSLWLGTFE-----------DMDDE------  241 (606)
T ss_dssp             ---------------------EEEEECTTCS---CHHHHHHH-TTTCEEEEEECCCCT-----------TSCCC------
T ss_pred             ---------------------ccccccCCch---hHHHHhhh-ccccchhheechhhc-----------ccccc------
Confidence                                 4444444443   12222221 333332222211111           01101      


Q ss_pred             ccCccchhHhhCCC--CCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCc
Q 041908          409 FSGELPKQFLTGCV--SLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQL  486 (883)
Q Consensus       409 l~~~ip~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~  486 (883)
                         .++...+.++.  +|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+.+..
T Consensus       242 ---~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~  317 (606)
T 3t6q_A          242 ---DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC  317 (606)
T ss_dssp             ---CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGG
T ss_pred             ---ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCc
Confidence               11122222222  5667777777776666666777778888888888777 56777788888888888888888777


Q ss_pred             chhhhCCCCCCEEECCCCcCCCCCCc-cccCCCcccEEecCCCcCcCcc--ccccccCCCcCeeecccCccccccchhhh
Q 041908          487 PHWVGNFSNLDVLLMSRNSLEGDVSV-PLSNLQVARILDISENKLYGPL--EFSFNHSSSLWHLFLHNNSLNGSIPSALF  563 (883)
Q Consensus       487 p~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~p~~~~  563 (883)
                      |..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+..  +..+..+++|++|++++|++++..|..+.
T Consensus       318 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  397 (606)
T 3t6q_A          318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK  397 (606)
T ss_dssp             GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT
T ss_pred             hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc
Confidence            77888888888888888888866654 4788888999999999888766  66788889999999999999888888899


Q ss_pred             cCCCCCEEeccCCcCCccCCcc-ccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCC-C--cccccccc
Q 041908          564 QSSQLMTLDLRDNEFSGNIPPL-INEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSI-P--SCFTNIWP  639 (883)
Q Consensus       564 ~~~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~-p--~~~~~~~~  639 (883)
                      .+++|+.|++++|++++..|.. +..+++|++|++++|++++..|..+..+++|+.|++++|++++.. |  ..+     
T Consensus       398 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-----  472 (606)
T 3t6q_A          398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL-----  472 (606)
T ss_dssp             TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGG-----
T ss_pred             CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhh-----
Confidence            9999999999999998876654 889999999999999999888999999999999999999887521 1  111     


Q ss_pred             cccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcC
Q 041908          640 WMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNEL  719 (883)
Q Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  719 (883)
                                                                                      ..+++|+.|||++|++
T Consensus       473 ----------------------------------------------------------------~~l~~L~~L~Ls~n~l  488 (606)
T 3t6q_A          473 ----------------------------------------------------------------QTLGRLEILVLSFCDL  488 (606)
T ss_dssp             ----------------------------------------------------------------GGCTTCCEEECTTSCC
T ss_pred             ----------------------------------------------------------------ccCCCccEEECCCCcc
Confidence                                                                            1267899999999999


Q ss_pred             cccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCCCc
Q 041908          720 TGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTK  799 (883)
Q Consensus       720 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~  799 (883)
                      ++.+|..|+.+++|+.|+|++|++++.+|..+++++.| .|||++|++++.+|..+..+++|+.+++++|+++|.++..+
T Consensus       489 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~  567 (606)
T 3t6q_A          489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIY  567 (606)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHH
T ss_pred             CccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHH
Confidence            99999999999999999999999999999999999999 99999999999999999999999999999999999888554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-56  Score=548.41  Aligned_cols=558  Identities=19%  Similarity=0.199  Sum_probs=380.4

Q ss_pred             CCCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhccc
Q 041908           88 KQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNK  167 (883)
Q Consensus        88 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~  167 (883)
                      +++++|||++|.+.+..+..|.++++|++|+|++|...+. +++..|.++++|++|+|++|.+.+..|            
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l~~~~p------------   90 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIYFLHP------------   90 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCCCEECT------------
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcCcccCH------------
Confidence            4566666666666655555566666666666666644433 433455555555555555555554444            


Q ss_pred             ccchhhhhcCCCCCCEEEccCCcCCCCCCcc--ccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccC
Q 041908          168 CREMNARICELKNLVELNLSWNKLDGSLPQC--LSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFS  245 (883)
Q Consensus       168 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~  245 (883)
                           ..+.++++|++|+|++|.+++.+|..  ++++++|++|++++|.+++..+...|+++++|++|++++|.+++.  
T Consensus        91 -----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~--  163 (844)
T 3j0a_A           91 -----DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV--  163 (844)
T ss_dssp             -----TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC--
T ss_pred             -----hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee--
Confidence                 44555555555555555555444433  555555555555555555332223455555555555555555432  


Q ss_pred             hHhhhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcC--CCCCEEEccCCCCcCCcchHHHhc
Q 041908          246 LSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQ--YDLRYIDLSHNNLAGTFPTWLLQN  323 (883)
Q Consensus       246 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~p~~~~~~  323 (883)
                                                                    .+..+..+  ++|+.|++++|.+.+..|..+. .
T Consensus       164 ----------------------------------------------~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~  196 (844)
T 3j0a_A          164 ----------------------------------------------CEHELEPLQGKTLSFFSLAANSLYSRVSVDWG-K  196 (844)
T ss_dssp             ----------------------------------------------CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-S
T ss_pred             ----------------------------------------------CHHHcccccCCccceEECCCCccccccccchh-h
Confidence                                                          23333333  4555555555555544433211 1


Q ss_pred             CCCCcEEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcC--CCCCcEEeCCCCcCCCCCCccccccCcccE
Q 041908          324 NTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMI--LPELVYLDMSQNSFEGSIPPSMGYTVRLLF  401 (883)
Q Consensus       324 l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  401 (883)
                      +++                 +.....|++|++++|.+.+..+..+...  .+.++.+.++.+.+...             
T Consensus       197 ~~~-----------------~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~-------------  246 (844)
T 3j0a_A          197 CMN-----------------PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG-------------  246 (844)
T ss_dssp             SSC-----------------TTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS-------------
T ss_pred             cCC-----------------ccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc-------------
Confidence            110                 0011134555555555555554444321  24567777765433211             


Q ss_pred             EeccCCcccCccchhHhhC--CCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccC
Q 041908          402 LDLSSNNFSGELPKQFLTG--CVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSN  479 (883)
Q Consensus       402 L~Ls~n~l~~~ip~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~  479 (883)
                        +..+.+.+ .....+.+  .++|+.|++++|.+.+..+..+..+++|+.|++++|++++..|..|..+++|++|++++
T Consensus       247 --~~~~~l~~-~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~  323 (844)
T 3j0a_A          247 --FGFHNIKD-PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY  323 (844)
T ss_dssp             --SSCSSSTT-GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred             --ccccccCC-CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence              11223321 22222233  36899999999999888888888999999999999999988888899999999999999


Q ss_pred             CccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccc
Q 041908          480 NMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIP  559 (883)
Q Consensus       480 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p  559 (883)
                      |.+++..|..+..+++|++|++++|++.+..+..+..+++|++|++++|.+++.     ..+++|+.|++++|+++ .+|
T Consensus       324 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~  397 (844)
T 3j0a_A          324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLP  397 (844)
T ss_dssp             CCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCC
T ss_pred             CCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccc
Confidence            999988888999999999999999999888888899999999999999998753     23778999999999998 566


Q ss_pred             hhhhcCCCCCEEeccCCcCCccC-CccccCCCCCcEEEccCCcccccCch-hhcCCCCCCEEEcCCCcCCCCCCcccccc
Q 041908          560 SALFQSSQLMTLDLRDNEFSGNI-PPLINEDSNLRALLLRGNNLQGNIPQ-QLCHLRKIAIVDISYNLLDGSIPSCFTNI  637 (883)
Q Consensus       560 ~~~~~~~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~g~~p~-~l~~l~~L~~L~ls~N~l~~~~p~~~~~~  637 (883)
                      ..   ..+++.|++++|++++.. +..+..+++|++|++++|++++..+. .+..+++|+.|++++|.+++..+.....-
T Consensus       398 ~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~  474 (844)
T 3j0a_A          398 KI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD  474 (844)
T ss_dssp             CC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSS
T ss_pred             cc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchh
Confidence            43   467999999999998642 23456889999999999999865443 45668999999999999875433211000


Q ss_pred             cccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCC
Q 041908          638 WPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSN  717 (883)
Q Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N  717 (883)
                                                                                    .  ...+++|+.|||++|
T Consensus       475 --------------------------------------------------------------~--~~~l~~L~~L~Ls~N  490 (844)
T 3j0a_A          475 --------------------------------------------------------------V--FEGLSHLQVLYLNHN  490 (844)
T ss_dssp             --------------------------------------------------------------C--SSCBCCEECCCCCHH
T ss_pred             --------------------------------------------------------------h--hcCcccccEEECCCC
Confidence                                                                          0  012578899999999


Q ss_pred             cCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCC
Q 041908          718 ELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPN  797 (883)
Q Consensus       718 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~  797 (883)
                      +|++.+|..|+++++|+.|+|++|+|++.+|..+.  ++|+.|||++|+|++.+|..+.   +|+.+++++|++.|.++.
T Consensus       491 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL  565 (844)
T ss_dssp             HHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC
T ss_pred             cccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccccc
Confidence            99999999999999999999999999988888776  8999999999999999998764   788999999999998875


Q ss_pred             CccCCCCCCcccCCCcCCCCCCCCCCCCCC
Q 041908          798 TKQFANFDESNYRGNLNLCGPAVLKNCSTD  827 (883)
Q Consensus       798 ~~~~~~~~~~~~~gn~~lc~~~~~~~c~~~  827 (883)
                      .+    |......+|..+||.+....|..+
T Consensus       566 ~~----f~~~~~~~~~~~~~~~~~~~C~~p  591 (844)
T 3j0a_A          566 ST----FINWLNHTNVTIAGPPADIYCVYP  591 (844)
T ss_dssp             CS----HHHHHHHTTTTTCCCGGGCCCSSC
T ss_pred             HH----HHHHHHhcCcccccccccCccCCc
Confidence            43    222223467778887777778653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.8e-54  Score=513.31  Aligned_cols=534  Identities=18%  Similarity=0.134  Sum_probs=464.3

Q ss_pred             cceeecCCCCCC--CCCCcCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECC
Q 041908           69 WERIKCNVTTAN--YNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLS  146 (883)
Q Consensus        69 w~gv~C~~~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls  146 (883)
                      +..+.|......  +..+  .+++++||+++|.+.+..|..|+++++|++|+|++|.+.+  +++..|+++++|++|+|+
T Consensus        14 ~~~~~c~~~~l~~iP~~l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls   89 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW--IHEDTFQSQHRLDTLVLT   89 (606)
T ss_dssp             TTEEECTTSCCSSCCTTS--CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE--ECTTTTTTCTTCCEEECT
T ss_pred             CceEECCCCCcccCcCCC--CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccce--eChhhccCccccCeeeCC
Confidence            456788754331  2223  2479999999999999889999999999999999999987  444789999999999999


Q ss_pred             CCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcC
Q 041908          147 GNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFAN  226 (883)
Q Consensus       147 ~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~  226 (883)
                      +|.+.+..|                 ..++++++|++|++++|++++..|..++++++|++|++++|++++ ++...+..
T Consensus        90 ~n~l~~~~~-----------------~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~  151 (606)
T 3t6q_A           90 ANPLIFMAE-----------------TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFP  151 (606)
T ss_dssp             TCCCSEECT-----------------TTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC-CCCCTTCC
T ss_pred             CCcccccCh-----------------hhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccc-cCcccccC
Confidence            999988777                 789999999999999999998778889999999999999999994 42235666


Q ss_pred             CCCCCEEeccCCcCccccChHhhhcCCCCc--EEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCE
Q 041908          227 LTSLEYLSLSGNNFQGSFSLSVLANHSRLE--VLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRY  304 (883)
Q Consensus       227 l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~--~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  304 (883)
                      +++|++|++++|.++ .++...++.+++|+  .|++++|.+....+..+...+|++|++++|.   .++..+..+.+++.
T Consensus       152 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~~~~l  227 (606)
T 3t6q_A          152 TEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ---NLLVIFKGLKNSTI  227 (606)
T ss_dssp             CTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS---CHHHHHHHTTTCEE
T ss_pred             CcccCEEEcccCccc-ccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCch---hHHHHhhhccccch
Confidence            999999999999998 45567899999999  8999999999888877777899999999997   45666777766655


Q ss_pred             EEccCCCCc----CCcchHHHhcCC--CCcEEEcccccccccccC-CCCCCCccEEEccCCccccccchhhhcCCCCCcE
Q 041908          305 IDLSHNNLA----GTFPTWLLQNNT--KLEFLFLFNNFLKGLLHL-PDSKRDLLHLVISNNNFIGMLPDNFGMILPELVY  377 (883)
Q Consensus       305 L~Ls~n~l~----~~~p~~~~~~l~--~L~~L~L~~n~l~~~~~~-~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~  377 (883)
                      ..+....+.    ..++...+..+.  +|+.|++++|.+++++.. ...+++|++|++++|.+. .+|..+.. +++|++
T Consensus       228 ~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~-l~~L~~  305 (606)
T 3t6q_A          228 QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKK  305 (606)
T ss_dssp             EEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCS-CTTCCE
T ss_pred             hheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcc-cccCCE
Confidence            555433222    123333333443  799999999999887654 457899999999999987 78887765 899999


Q ss_pred             EeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcC--cccccCCCCCCeEEccC
Q 041908          378 LDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQI--FPKYMSMTQLAWLYLND  455 (883)
Q Consensus       378 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~  455 (883)
                      |++++|.+++..|..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+.+..  +..+..+++|++|++++
T Consensus       306 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~  385 (606)
T 3t6q_A          306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY  385 (606)
T ss_dssp             EECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCS
T ss_pred             EECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCC
Confidence            9999999998888899999999999999999998999887889999999999999998876  77889999999999999


Q ss_pred             cccCccccccccCCCCCCEEEccCCccCCCcch-hhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCc-
Q 041908          456 NQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPH-WVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGP-  533 (883)
Q Consensus       456 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-  533 (883)
                      |++.+..|..+..+++|++|++++|.+.+..|. .+..+++|++|++++|.+++..|..+..+++|++|++++|++.+. 
T Consensus       386 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  465 (606)
T 3t6q_A          386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN  465 (606)
T ss_dssp             CSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGE
T ss_pred             CcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccc
Confidence            999999999999999999999999999877654 489999999999999999999999999999999999999999873 


Q ss_pred             --cccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhc
Q 041908          534 --LEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLC  611 (883)
Q Consensus       534 --~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~  611 (883)
                        .+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++| +|++++|++++..|..+.
T Consensus       466 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~  544 (606)
T 3t6q_A          466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP  544 (606)
T ss_dssp             ECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHH
T ss_pred             cccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcc
Confidence              23568899999999999999999889999999999999999999999999999999999 999999999999999999


Q ss_pred             CCCCCCEEEcCCCcCCCCCC
Q 041908          612 HLRKIAIVDISYNLLDGSIP  631 (883)
Q Consensus       612 ~l~~L~~L~ls~N~l~~~~p  631 (883)
                      .+++|+.+++++|++.+..+
T Consensus       545 ~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          545 ILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             HHHTSSEEECTTCCEECSGG
T ss_pred             cCCCCCEEeCCCCCccccCC
Confidence            99999999999999987655

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1e-54  Score=515.36  Aligned_cols=547  Identities=20%  Similarity=0.159  Sum_probs=367.1

Q ss_pred             eeecCCCCC--CCCCCcCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q 041908           71 RIKCNVTTA--NYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGN  148 (883)
Q Consensus        71 gv~C~~~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n  148 (883)
                      .|.|....-  -+..+  .+++++|++++|.+.+..+..|.++++|++|+|++|.+++  +++..|.++++|++|+|++|
T Consensus        15 ~~~c~~~~l~~ip~~~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--i~~~~~~~l~~L~~L~Ls~n   90 (606)
T 3vq2_A           15 TYQCMDQKLSKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET--IEDKAWHGLHHLSNLILTGN   90 (606)
T ss_dssp             EEECTTSCCSSCCTTS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTC
T ss_pred             ceEccCCCcccCCCCC--CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc--cCHHHhhchhhcCEeECCCC
Confidence            577765322  12222  3789999999999988888889999999999999999887  55478999999999999999


Q ss_pred             CCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcccc-ccChhhhcCC
Q 041908          149 GLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSG-NLPISVFANL  227 (883)
Q Consensus       149 ~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~ip~~~~~~l  227 (883)
                      .+.+..|                 ..++++++|++|+|++|++++..+..++++++|++|++++|.+++ .+| ..++++
T Consensus        91 ~l~~~~p-----------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp-~~~~~l  152 (606)
T 3vq2_A           91 PIQSFSP-----------------GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP-AYFSNL  152 (606)
T ss_dssp             CCCCCCT-----------------TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCC-GGGGTC
T ss_pred             cccccCh-----------------hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceech-HhHhhc
Confidence            9887767                 778899999999999999987777889999999999999999885 578 789999


Q ss_pred             CCCCEEeccCCcCccccChHhhhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEc
Q 041908          228 TSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDL  307 (883)
Q Consensus       228 ~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  307 (883)
                      ++|++|++++|++++. +...++.+++|+.                   .+++|++++|.+++..+..+... +|++|++
T Consensus       153 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~-------------------~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L  211 (606)
T 3vq2_A          153 TNLVHVDLSYNYIQTI-TVNDLQFLRENPQ-------------------VNLSLDMSLNPIDFIQDQAFQGI-KLHELTL  211 (606)
T ss_dssp             TTCCEEECCSSCCCEE-CTTTTHHHHHCTT-------------------CCCEEECTTCCCCEECTTTTTTC-EEEEEEE
T ss_pred             CCCCEEEccCCcceec-Chhhhhhhhcccc-------------------ccceeeccCCCcceeCcccccCc-eeeeeec
Confidence            9999999999998854 3344544444331                   12234444444444333333333 5666666


Q ss_pred             cCCCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCC
Q 041908          308 SHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEG  387 (883)
Q Consensus       308 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~  387 (883)
                      ++|.+++......+.+++.|+.+++..+.+.....       +.       .+....+.                     
T Consensus       212 ~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-------l~-------~~~~~~~~---------------------  256 (606)
T 3vq2_A          212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN-------LE-------IFEPSIME---------------------  256 (606)
T ss_dssp             ESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC-------CS-------CCCGGGGT---------------------
T ss_pred             cCCccchhHHHHHhccccccccccccccccccCCc-------cc-------ccChHHhh---------------------
Confidence            66666533333333466666666554433322110       00       00001111                     


Q ss_pred             CCCccccccCcccEEec-cCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccc
Q 041908          388 SIPPSMGYTVRLLFLDL-SSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGL  466 (883)
Q Consensus       388 ~~p~~l~~l~~L~~L~L-s~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  466 (883)
                          .+..+ .++.+++ ..+.+.+.+|.  +..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+ +.+| .+
T Consensus       257 ----~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~  325 (606)
T 3vq2_A          257 ----GLCDV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL  325 (606)
T ss_dssp             ----TGGGS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC
T ss_pred             ----hhhhc-cHhheeccccccccccccc--cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC
Confidence                11111 2333444 33334333332  2233333333333333321 11 223334444444444444 2333 22


Q ss_pred             cCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCc--cccccccCCCc
Q 041908          467 LNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGP--LEFSFNHSSSL  544 (883)
Q Consensus       467 ~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~~L  544 (883)
                       .+++|++|++++|.                        ..+..  .+..+++|++|++++|++++.  .+..+..+++|
T Consensus       326 -~l~~L~~L~l~~n~------------------------~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L  378 (606)
T 3vq2_A          326 -DLPFLKSLTLTMNK------------------------GSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL  378 (606)
T ss_dssp             -CCSSCCEEEEESCS------------------------SCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCC
T ss_pred             -CCCccceeeccCCc------------------------Cccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcc
Confidence             44444555554443                        32222  344555566666666655544  24556666677


Q ss_pred             CeeecccCccccccchhhhcCCCCCEEeccCCcCCccCC-ccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCC
Q 041908          545 WHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIP-PLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISY  623 (883)
Q Consensus       545 ~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~  623 (883)
                      ++|++++|.+++ +|..+..+++|+.|++++|++++..| ..+..+++|++|++++|++++..|..+..+++|+.|++++
T Consensus       379 ~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  457 (606)
T 3vq2_A          379 RHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG  457 (606)
T ss_dssp             CEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred             cEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCC
Confidence            777777777663 55667777788888888888777766 5777788888888888888877888888888888888888


Q ss_pred             CcCCCC-CCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccccccc
Q 041908          624 NLLDGS-IPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYK  702 (883)
Q Consensus       624 N~l~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  702 (883)
                      |++++. +|..+..                                                                  
T Consensus       458 n~l~~~~~~~~~~~------------------------------------------------------------------  471 (606)
T 3vq2_A          458 NSFKDNTLSNVFAN------------------------------------------------------------------  471 (606)
T ss_dssp             CEEGGGEECSCCTT------------------------------------------------------------------
T ss_pred             CcCCCcchHHhhcc------------------------------------------------------------------
Confidence            887763 4443322                                                                  


Q ss_pred             ccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCC-CC
Q 041908          703 GGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELN-YL  781 (883)
Q Consensus       703 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~-~L  781 (883)
                         +++|+.|||++|++++.+|..++.+++|++|+|++|++++.+|..++++++|+.|||++|+++ .+|..+..++ +|
T Consensus       472 ---l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L  547 (606)
T 3vq2_A          472 ---TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSL  547 (606)
T ss_dssp             ---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTC
T ss_pred             ---CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccC
Confidence               567889999999999999999999999999999999999999999999999999999999999 6788899987 59


Q ss_pred             cEEEccCCcCcccCCCCccCCCC
Q 041908          782 AIFNVSYNDLSGPTPNTKQFANF  804 (883)
Q Consensus       782 ~~l~ls~N~l~g~ip~~~~~~~~  804 (883)
                      +++++++|++.|.+|..+...++
T Consensus       548 ~~l~l~~N~~~c~c~~~~~~~~l  570 (606)
T 3vq2_A          548 AFFNLTNNSVACICEHQKFLQWV  570 (606)
T ss_dssp             CEEECCSCCCCCSSTTHHHHTTT
T ss_pred             cEEEccCCCcccCCccHHHHHHH
Confidence            99999999999998875544443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.4e-52  Score=497.15  Aligned_cols=541  Identities=20%  Similarity=0.167  Sum_probs=390.5

Q ss_pred             CEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccc
Q 041908           91 KILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCRE  170 (883)
Q Consensus        91 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~  170 (883)
                      ++++.+++++.. +|..+.  ++|++|+|++|.+++  ++...|.++++|++|++++|.+.+..|               
T Consensus        14 ~~~~c~~~~l~~-ip~~~~--~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~i~~---------------   73 (606)
T 3vq2_A           14 ITYQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKI--LKSYSFSNFSELQWLDLSRCEIETIED---------------   73 (606)
T ss_dssp             TEEECTTSCCSS-CCTTSC--TTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECTTCCCCEECT---------------
T ss_pred             CceEccCCCccc-CCCCCC--CCcCEEECCCCCcCE--eChhhccCCccCcEEeCCCCcccccCH---------------
Confidence            467777777655 344333  567777777777665  444566666666666666666655444               


Q ss_pred             hhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhh
Q 041908          171 MNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLA  250 (883)
Q Consensus       171 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~  250 (883)
                        ..+.++++|++|+|++|++++..|..|+++++|++|++++|.++ .+|...++++++|++|++++|.+++        
T Consensus        74 --~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~--------  142 (606)
T 3vq2_A           74 --KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHS--------  142 (606)
T ss_dssp             --TTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCC--------
T ss_pred             --HHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc-cccccccCCCCCCCEEeCCCCcccc--------
Confidence              55666666666666666666555666666666666666666666 3332445555555555555555441        


Q ss_pred             cCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEE
Q 041908          251 NHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFL  330 (883)
Q Consensus       251 ~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L  330 (883)
                                                             ..+|..++.+++|++|++++|.+++..|..+. .+++|+  
T Consensus       143 ---------------------------------------~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~--  180 (606)
T 3vq2_A          143 ---------------------------------------CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ-FLRENP--  180 (606)
T ss_dssp             ---------------------------------------CCCCGGGGTCTTCCEEECCSSCCCEECTTTTH-HHHHCT--
T ss_pred             ---------------------------------------eechHhHhhcCCCCEEEccCCcceecChhhhh-hhhccc--
Confidence                                                   13466777888888888888888754444322 222111  


Q ss_pred             EcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCC-CCCCccccccCcccEEeccCCcc
Q 041908          331 FLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFE-GSIPPSMGYTVRLLFLDLSSNNF  409 (883)
Q Consensus       331 ~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l  409 (883)
                                       ..++++++++|.+.+..+..+.  ..+|++|++++|.+. +.+|..+..++.|+.+++..+.+
T Consensus       181 -----------------~~l~~L~l~~n~l~~~~~~~~~--~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~  241 (606)
T 3vq2_A          181 -----------------QVNLSLDMSLNPIDFIQDQAFQ--GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF  241 (606)
T ss_dssp             -----------------TCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred             -----------------cccceeeccCCCcceeCccccc--CceeeeeeccCCccchhHHHHHhcccccccccccccccc
Confidence                             0133555555655543333332  225555555555554 23344455555555555443332


Q ss_pred             cCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEc-cCcccCccccccccCCCCCCEEEccCCccCCCcch
Q 041908          410 SGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYL-NDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPH  488 (883)
Q Consensus       410 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~  488 (883)
                      .+..         .+.       .+....+..+..+ .++.+++ ..|.+.+.+|. +..+++|+.|++++|.+. .+| 
T Consensus       242 ~~~~---------~l~-------~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-  301 (606)
T 3vq2_A          242 KDER---------NLE-------IFEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-  301 (606)
T ss_dssp             TTSC---------CCS-------CCCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-
T ss_pred             ccCC---------ccc-------ccChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-
Confidence            2100         000       0011112222222 4667777 77888888887 888999999999999997 566 


Q ss_pred             hhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccc--cchhhhcCC
Q 041908          489 WVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGS--IPSALFQSS  566 (883)
Q Consensus       489 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~--~p~~~~~~~  566 (883)
                      .+..+++|++|++++|.+ +.+| .+ .+++|+.|++++|+..+.+  .+..+++|++|++++|.+++.  +|..+..++
T Consensus       302 ~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~  376 (606)
T 3vq2_A          302 DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTN  376 (606)
T ss_dssp             CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCS
T ss_pred             hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCC
Confidence            788999999999999999 6777 45 9999999999999765544  577899999999999999876  488999999


Q ss_pred             CCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCc-hhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCC
Q 041908          567 QLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIP-QQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGD  645 (883)
Q Consensus       567 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p-~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~  645 (883)
                      +|++|++++|.+++ +|..+..+++|++|++++|++.+..| ..+..+++|+.|++++|++++..|..+..         
T Consensus       377 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------  446 (606)
T 3vq2_A          377 SLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG---------  446 (606)
T ss_dssp             CCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT---------
T ss_pred             cccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC---------
Confidence            99999999999985 67889999999999999999998888 68999999999999999998877765533         


Q ss_pred             CCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcc-cCc
Q 041908          646 PFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTG-EIP  724 (883)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~ip  724 (883)
                                                                                  +++|+.|++++|++++ .+|
T Consensus       447 ------------------------------------------------------------l~~L~~L~l~~n~l~~~~~~  466 (606)
T 3vq2_A          447 ------------------------------------------------------------LTSLNTLKMAGNSFKDNTLS  466 (606)
T ss_dssp             ------------------------------------------------------------CTTCCEEECTTCEEGGGEEC
T ss_pred             ------------------------------------------------------------CCCCCEEECCCCcCCCcchH
Confidence                                                                        5678999999999998 478


Q ss_pred             ccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCCC-ccCC-
Q 041908          725 SAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNT-KQFA-  802 (883)
Q Consensus       725 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~-~~~~-  802 (883)
                      ..++.+++|++|+|++|++++.+|..++++++|++|||++|++++.+|..+.++++|+.|++++|+++. +|.. ..+. 
T Consensus       467 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~  545 (606)
T 3vq2_A          467 NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPK  545 (606)
T ss_dssp             SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCT
T ss_pred             HhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999994 6765 2332 


Q ss_pred             CCCCcccCCCcCCCCCC
Q 041908          803 NFDESNYRGNLNLCGPA  819 (883)
Q Consensus       803 ~~~~~~~~gn~~lc~~~  819 (883)
                      ++....+.|||..|..+
T Consensus       546 ~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          546 SLAFFNLTNNSVACICE  562 (606)
T ss_dssp             TCCEEECCSCCCCCSST
T ss_pred             cCcEEEccCCCcccCCc
Confidence            34555788999998654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.8e-52  Score=508.81  Aligned_cols=523  Identities=19%  Similarity=0.200  Sum_probs=372.8

Q ss_pred             ccccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccC
Q 041908          166 NKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFS  245 (883)
Q Consensus       166 n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~  245 (883)
                      +.++.+|.   -.++|++|+|++|.+++..|..|+++++|++|+|++|...+.++...|+++++|++|+|++|.+++..|
T Consensus        14 ~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p   90 (844)
T 3j0a_A           14 CNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP   90 (844)
T ss_dssp             CCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred             CCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence            34455554   346677777777777766666777777777777777755556644667777777777777777664323


Q ss_pred             hHhhhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchh--hhcCCCCCEEEccCCCCcCCcchHHHhc
Q 041908          246 LSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSF--LQYQYDLRYIDLSHNNLAGTFPTWLLQN  323 (883)
Q Consensus       246 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~Ls~n~l~~~~p~~~~~~  323 (883)
                       ..+.++++|++|++++|.+                       ++.+|..  +..+++|++|++++|.+++..|...+.+
T Consensus        91 -~~~~~l~~L~~L~Ls~n~l-----------------------~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~  146 (844)
T 3j0a_A           91 -DAFQGLFHLFELRLYFCGL-----------------------SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK  146 (844)
T ss_dssp             -TSSCSCSSCCCEECTTCCC-----------------------SSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT
T ss_pred             -hHccCCcccCEeeCcCCCC-----------------------CcccccCccccccCCCCEEECCCCcccccccchhHhh
Confidence             4455555555555544444                       3333222  4445555555555555543333222234


Q ss_pred             CCCCcEEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCC--CCCcEEeCCCCcCCCCCCccccccCc---
Q 041908          324 NTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMIL--PELVYLDMSQNSFEGSIPPSMGYTVR---  398 (883)
Q Consensus       324 l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~---  398 (883)
                      +++|++|++++|.++                       +..+..+.. +  ++|+.|+++.|.+.+..|..++.+++   
T Consensus       147 L~~L~~L~Ls~N~i~-----------------------~~~~~~l~~-l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  202 (844)
T 3j0a_A          147 LNSLKSIDFSSNQIF-----------------------LVCEHELEP-LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR  202 (844)
T ss_dssp             CSSCCEEEEESSCCC-----------------------CCCSGGGHH-HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT
T ss_pred             CCCCCEEECCCCcCC-----------------------eeCHHHccc-ccCCccceEECCCCccccccccchhhcCCccc
Confidence            444444444443333                       223333321 2  34444444444444444444333333   


Q ss_pred             ---ccEEeccCCcccCccchhHhhC--CCCCCEEEcc---------CcccCCcCcccccCC--CCCCeEEccCcccCccc
Q 041908          399 ---LLFLDLSSNNFSGELPKQFLTG--CVSLAFMNVS---------HNYFGGQIFPKYMSM--TQLAWLYLNDNQFTGRL  462 (883)
Q Consensus       399 ---L~~L~Ls~n~l~~~ip~~~~~~--l~~L~~L~Ls---------~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~  462 (883)
                         |++|++++|.+++.++..+...  ..+++.+.++         .+.+.+.....+..+  ++|+.|++++|.+.+..
T Consensus       203 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~  282 (844)
T 3j0a_A          203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN  282 (844)
T ss_dssp             TCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC
T ss_pred             cCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC
Confidence               5555555555554444443322  1344555544         233333333444443  78999999999999999


Q ss_pred             cccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCC
Q 041908          463 EEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSS  542 (883)
Q Consensus       463 ~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  542 (883)
                      +..+..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+..|..++
T Consensus       283 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~  362 (844)
T 3j0a_A          283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE  362 (844)
T ss_dssp             SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC
T ss_pred             hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC
Confidence            99999999999999999999988899999999999999999999999999999999999999999999988888899999


Q ss_pred             CcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccC-chhhcCCCCCCEEEc
Q 041908          543 SLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNI-PQQLCHLRKIAIVDI  621 (883)
Q Consensus       543 ~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~-p~~l~~l~~L~~L~l  621 (883)
                      +|+.|++++|.+++ ++    .+++|+.|++++|+++ .+|..   ..+++.|++++|++++.- +..+..+++|+.|++
T Consensus       363 ~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~L  433 (844)
T 3j0a_A          363 KLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILIL  433 (844)
T ss_dssp             CCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEE
T ss_pred             CCCEEECCCCCCCc-cc----CCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeC
Confidence            99999999999984 33    3789999999999999 56654   467999999999998642 345678999999999


Q ss_pred             CCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccc
Q 041908          622 SYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESY  701 (883)
Q Consensus       622 s~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  701 (883)
                      ++|++++..+....                                                                  
T Consensus       434 s~N~l~~~~~~~~~------------------------------------------------------------------  447 (844)
T 3j0a_A          434 NQNRFSSCSGDQTP------------------------------------------------------------------  447 (844)
T ss_dssp             ESCCCCCCCSSSSS------------------------------------------------------------------
T ss_pred             CCCccccccccccc------------------------------------------------------------------
Confidence            99999865433110                                                                  


Q ss_pred             cccccccccEEEccCCcCc-----ccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCcccc
Q 041908          702 KGGVLEYMTGLDLSSNELT-----GEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELS  776 (883)
Q Consensus       702 ~~~~l~~L~~LdLs~N~l~-----g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~  776 (883)
                        ..+++|+.|+|++|.++     +..|..|.++++|++|+|++|++++.+|..|+++++|+.|||++|+|++..|..+.
T Consensus       448 --~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~  525 (844)
T 3j0a_A          448 --SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP  525 (844)
T ss_dssp             --CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC
T ss_pred             --ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh
Confidence              11467899999999997     45567789999999999999999999999999999999999999999988887776


Q ss_pred             CCCCCcEEEccCCcCcccCCCCccCCCCCCcccCCCcCCCCCCC
Q 041908          777 ELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPAV  820 (883)
Q Consensus       777 ~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~~~  820 (883)
                        ++|+.||+++|+++|.+|..  |..+....+.|||..|..+.
T Consensus       526 --~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          526 --ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             --SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred             --ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence              89999999999999999865  45666677899999996543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=6.5e-52  Score=490.83  Aligned_cols=496  Identities=17%  Similarity=0.179  Sum_probs=334.2

Q ss_pred             cHHHHHHHHHhhhcCCcCCcc--cccCCccCCCCCCCCCCCCcc---ceeecCCCCCCCCCCcCCCCCCEEECCCCCCCC
Q 041908           28 LDNERIGLLEIKTFIKSVSDM--QFADAILVSWVDNRTSDCCSW---ERIKCNVTTANYNNNGSLKQLKILNIGFNSFSE  102 (883)
Q Consensus        28 ~~~~~~all~~k~~~~~~~~~--~~~~~~l~sW~~~~~~~cc~w---~gv~C~~~~~~~~~l~~l~~L~~L~Ls~n~l~~  102 (883)
                      ...|++||.++|+++..+...  +.+.....+| +. +++||.|   .||+|+..          .+++.|+|+++++.|
T Consensus        28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W-~~-~~~~c~w~~~~GV~C~~~----------~~V~~L~L~~~~l~g   95 (636)
T 4eco_A           28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANW-NF-NKELDMWGAQPGVSLNSN----------GRVTGLSLEGFGASG   95 (636)
T ss_dssp             HHHHHHHHHHHHHHTTGGGCCCCC------CCC-CC-SSCGGGTTCCTTEEECTT----------CCEEEEECTTSCCEE
T ss_pred             HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCC-CC-CCCcccccCCCCeEEcCC----------CCEEEEEecCcccCC
Confidence            457999999999998654211  0012345689 33 4799999   99999754          279999999999999


Q ss_pred             CCchhhcCCCCCCEEeCCCCCCCCC-----------CCCCCCCCCCCCCCEEECCCCCCCCccccccccc----------
Q 041908          103 SLVPLLTSLTSLTSLFLEGNNLGVG-----------FKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKL----------  161 (883)
Q Consensus       103 ~~~~~l~~l~~L~~L~Ls~n~l~~~-----------~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L----------  161 (883)
                      .+|+.++++++|++|+|++|.+...           .+|. .  .+..|+ +++++|.+.+.+|..+..+          
T Consensus        96 ~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~-~--~~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~  171 (636)
T 4eco_A           96 RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD-E--QKQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQ  171 (636)
T ss_dssp             EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCH-H--HHHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTT
T ss_pred             cCChHHhcCccceEEECcCCccccCCccccccccccCchH-H--HHHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcc
Confidence            9999999999999999999976211           0221 1  144566 7777777777666444321          


Q ss_pred             ---------------h--hhcccccchhhhhcCCCCCCEEEccCCcCCCC-----------------CCcccc--CCCCC
Q 041908          162 ---------------E--LLNNKCREMNARICELKNLVELNLSWNKLDGS-----------------LPQCLS--NLTYL  205 (883)
Q Consensus       162 ---------------~--~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-----------------~p~~l~--~l~~L  205 (883)
                                     .  ...|+++++|..++++++|++|+|++|.+++.                 +|+.++  ++++|
T Consensus       172 ~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L  251 (636)
T 4eco_A          172 QKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL  251 (636)
T ss_dssp             SCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred             ccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCC
Confidence                           1  11456667777788888888888888888875                 788877  88888


Q ss_pred             CEEEccCCccccccChhhhcCCCCCCEEeccCCc-Ccc-ccChHhhhcCCCCcEEEccCcccccCCCCCCCCccceEEEc
Q 041908          206 RVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNN-FQG-SFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNL  283 (883)
Q Consensus       206 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~-l~g-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L  283 (883)
                      ++|++++|.+.|.+| ..++++++|++|++++|+ ++| .+|. .++++.                 ....+++|++|++
T Consensus       252 ~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~-----------------~~~~l~~L~~L~L  312 (636)
T 4eco_A          252 TDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLKD-DWQALA-----------------DAPVGEKIQIIYI  312 (636)
T ss_dssp             CEEEEECCTTCSSCC-TTTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHH-----------------HSGGGGTCCEEEC
T ss_pred             CEEEecCCcCCccCh-HHHhcCCCCCEEECcCCCCCccccchH-HHHhhh-----------------ccccCCCCCEEEC
Confidence            888888888887888 778888888888888887 776 5663 333330                 0001124455555


Q ss_pred             ccCcCCccCch--hhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCCCC-ccEEEccCCcc
Q 041908          284 RRCNISGTIPS--FLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRD-LLHLVISNNNF  360 (883)
Q Consensus       284 ~~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-L~~L~ls~n~l  360 (883)
                      ++|.++ .+|.  .++.+++|++|++++|.++|.+| . +..+++|++|++++|.++.++.....+++ |++|++++|.+
T Consensus       313 ~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l  389 (636)
T 4eco_A          313 GYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL  389 (636)
T ss_dssp             CSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCC
T ss_pred             CCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcC
Confidence            666666 5666  77788888888888888887777 3 34677777777777777755444445666 77777777776


Q ss_pred             ccccchhhhc-CCCCCcEEeCCCCcCCCCCCcccc-------ccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCc
Q 041908          361 IGMLPDNFGM-ILPELVYLDMSQNSFEGSIPPSMG-------YTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHN  432 (883)
Q Consensus       361 ~~~~p~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~-------~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n  432 (883)
                      . .+|..+.. .+++|++|++++|.+++.+|..+.       .+++|++|++++|.++ .+|..++..+++|++|++++|
T Consensus       390 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N  467 (636)
T 4eco_A          390 K-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGN  467 (636)
T ss_dssp             S-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSS
T ss_pred             c-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCC
Confidence            6 56665532 123677777777777777777666       6667777777777777 677766666677777777777


Q ss_pred             ccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhh--CCCCCCEEECCCCcCCCCC
Q 041908          433 YFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVG--NFSNLDVLLMSRNSLEGDV  510 (883)
Q Consensus       433 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~~  510 (883)
                      +++ .+|.......                +..+.++++|++|++++|.++ .+|..+.  .+++|++|++++|++++ +
T Consensus       468 ~l~-~i~~~~~~~~----------------~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-i  528 (636)
T 4eco_A          468 MLT-EIPKNSLKDE----------------NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-F  528 (636)
T ss_dssp             CCS-BCCSSSSEET----------------TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-C
T ss_pred             CCC-CcCHHHhccc----------------cccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-c
Confidence            666 3332211100                001122336777777777776 5666665  67777777777777776 6


Q ss_pred             CccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCC
Q 041908          511 SVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDS  590 (883)
Q Consensus       511 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~  590 (883)
                      |..+.++++|+.|++++|+                  ++++|++.+.+|..+.++++|++|+|++|++ +.+|..+.  +
T Consensus       529 p~~~~~l~~L~~L~Ls~N~------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~  587 (636)
T 4eco_A          529 PTQPLNSSTLKGFGIRNQR------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--P  587 (636)
T ss_dssp             CCGGGGCSSCCEEECCSCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--T
T ss_pred             ChhhhcCCCCCEEECCCCc------------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--C
Confidence            6667777777777776664                  4556666666777777777777777777777 46666554  6


Q ss_pred             CCcEEEccCCccc
Q 041908          591 NLRALLLRGNNLQ  603 (883)
Q Consensus       591 ~L~~L~L~~N~l~  603 (883)
                      +|++|++++|++.
T Consensus       588 ~L~~L~Ls~N~l~  600 (636)
T 4eco_A          588 NISVLDIKDNPNI  600 (636)
T ss_dssp             TCCEEECCSCTTC
T ss_pred             cCCEEECcCCCCc
Confidence            7777777777665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.3e-50  Score=486.25  Aligned_cols=515  Identities=16%  Similarity=0.157  Sum_probs=312.5

Q ss_pred             CCCcHHHHHHHHHhhhcCCcCCcccccCCccCCCCCCC---CCCC--Ccc------------ceeecCCCCCCCCCCcCC
Q 041908           25 KSCLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNR---TSDC--CSW------------ERIKCNVTTANYNNNGSL   87 (883)
Q Consensus        25 ~~c~~~~~~all~~k~~~~~~~~~~~~~~~l~sW~~~~---~~~c--c~w------------~gv~C~~~~~~~~~l~~l   87 (883)
                      .++..+|++||++||+++.++           +|....   ..+|  |.|            .||+|+..          
T Consensus       264 ~~~~~~d~~ALl~~k~~l~~~-----------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~----------  322 (876)
T 4ecn_A          264 TAEYIKDYKALKAIWEALDGK-----------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN----------  322 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGG-----------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT----------
T ss_pred             cccchHHHHHHHHHHHHcCCC-----------CCCcCCCcccccCCccccccccccccccCcCceEecCC----------
Confidence            345678999999999999432           673221   1355  999            99999862          


Q ss_pred             CCCCEEECCCCCCCCCCchhhcCCCCCCEEeC-CCCCCCCCCCCCCCCCC---CCCCC--E---------EEC-CCCCCC
Q 041908           88 KQLKILNIGFNSFSESLVPLLTSLTSLTSLFL-EGNNLGVGFKPMKVLPN---LRNLE--V---------LDL-SGNGLI  151 (883)
Q Consensus        88 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L-s~n~l~~~~ip~~~l~~---l~~L~--~---------L~L-s~n~l~  151 (883)
                      .+++.|+|+++++.|.+|+.++++++|++|+| ++|.+.|. .|......   +...+  .         ++. ....+.
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            27999999999999999999999999999999 88877764 33211110   00000  0         000 000000


Q ss_pred             Ccc-----------------ccccccchh--hcccccchhhhhcCCCCCCEEEccCCcCCC-----------------CC
Q 041908          152 GSL-----------------TMQGEKLEL--LNNKCREMNARICELKNLVELNLSWNKLDG-----------------SL  195 (883)
Q Consensus       152 ~~~-----------------~~~l~~L~~--~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----------------~~  195 (883)
                      +.+                 ...+..+.+  ..|++.++|..++++++|++|+|++|++++                 .+
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence            000                 011112222  246677778999999999999999999998                 38


Q ss_pred             Ccccc--CCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCc-Ccc-ccChHhhhcCCCCcEEEccCcccccCCCC
Q 041908          196 PQCLS--NLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNN-FQG-SFSLSVLANHSRLEVLQISRLQIETENFP  271 (883)
Q Consensus       196 p~~l~--~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~-l~g-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~  271 (883)
                      |+.++  ++++|++|+|++|.+.+.+| ..++++++|++|++++|+ ++| .+|.. +.+++                ..
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~----------------~~  543 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKAD-WTRLA----------------DD  543 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHH----------------HC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEECcCCCCcccccchHH-HHhhh----------------hc
Confidence            88877  99999999999999888899 788999999999999998 887 66642 33322                01


Q ss_pred             CCCCccceEEEcccCcCCccCch--hhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCCCC
Q 041908          272 WLPRFQLKVLNLRRCNISGTIPS--FLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRD  349 (883)
Q Consensus       272 ~~~~~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  349 (883)
                      ....++|++|++++|.++ .+|.  .+..+++|++|++++|.++ .+| . +..+++|+.|++++|.+..++.....+++
T Consensus       544 ~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~-~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~  619 (876)
T 4ecn_A          544 EDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A-FGTNVKLTDLKLDYNQIEEIPEDFCAFTD  619 (876)
T ss_dssp             TTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C-CCTTSEESEEECCSSCCSCCCTTSCEECT
T ss_pred             ccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h-hcCCCcceEEECcCCccccchHHHhhccc
Confidence            112234555666666666 5666  6777777777777777777 666 2 33566666666666666544333334444


Q ss_pred             -ccEEEccCCccccccchhhhcCC--CCCcEEeCCCCcCCCCCCccc---c--ccCcccEEeccCCcccCccchhHhhCC
Q 041908          350 -LLHLVISNNNFIGMLPDNFGMIL--PELVYLDMSQNSFEGSIPPSM---G--YTVRLLFLDLSSNNFSGELPKQFLTGC  421 (883)
Q Consensus       350 -L~~L~ls~n~l~~~~p~~~~~~l--~~L~~L~L~~n~l~~~~p~~l---~--~l~~L~~L~Ls~n~l~~~ip~~~~~~l  421 (883)
                       |++|++++|.+. .+|..+.. +  ++|+.|++++|++.+.+|...   .  .+++|+.|++++|.+. .+|..++..+
T Consensus       620 ~L~~L~Ls~N~L~-~lp~~~~~-~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l  696 (876)
T 4ecn_A          620 QVEGLGFSHNKLK-YIPNIFNA-KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATG  696 (876)
T ss_dssp             TCCEEECCSSCCC-SCCSCCCT-TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTT
T ss_pred             cCCEEECcCCCCC-cCchhhhc-cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccC
Confidence             555555555554 44443322 2  225555555555554333211   1  1224455555555554 4444444444


Q ss_pred             CCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhh--CCCCCCEE
Q 041908          422 VSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVG--NFSNLDVL  499 (883)
Q Consensus       422 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~--~l~~L~~L  499 (883)
                      ++|+.|++++|.++ .+|..+....                +..+.++++|+.|++++|.++ .+|..+.  .+++|+.|
T Consensus       697 ~~L~~L~Ls~N~L~-~ip~~~~~~~----------------~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L  758 (876)
T 4ecn_A          697 SPISTIILSNNLMT-SIPENSLKPK----------------DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNM  758 (876)
T ss_dssp             CCCSEEECCSCCCS-CCCTTSSSCT----------------TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEE
T ss_pred             CCCCEEECCCCcCC-ccChHHhccc----------------cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEE
Confidence            44444444444443 2221111000                000112235666666666655 4555554  55666666


Q ss_pred             ECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCC
Q 041908          500 LMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFS  579 (883)
Q Consensus       500 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~  579 (883)
                      ++++|++++ +|..+..+++|+.|++++|+                  ++++|++.+.+|..+.++++|+.|+|++|++ 
T Consensus       759 ~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-  818 (876)
T 4ecn_A          759 DVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-  818 (876)
T ss_dssp             ECCSSCCSS-CCCGGGGCTTCCEEECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred             EeCCCCCCc-cchhhhcCCCCCEEECCCCC------------------CcccccccccChHHHhcCCCCCEEECCCCCC-
Confidence            666666655 45555566666666665554                  4455777777777777778888888888887 


Q ss_pred             ccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcC
Q 041908          580 GNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLL  626 (883)
Q Consensus       580 ~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l  626 (883)
                      +.+|..+.  ++|+.|+|++|++...-+..++....+..+.+.+|+.
T Consensus       819 ~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~  863 (876)
T 4ecn_A          819 RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT  863 (876)
T ss_dssp             CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred             CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence            56777654  5788888888877765556665555555556666554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-49  Score=466.04  Aligned_cols=524  Identities=19%  Similarity=0.161  Sum_probs=347.5

Q ss_pred             CEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccc
Q 041908           91 KILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCRE  170 (883)
Q Consensus        91 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~  170 (883)
                      ++.+.++.++.. +|..+.  +++++|+|++|.+++  ++...|.++++|++|||++|.+.+..+               
T Consensus        10 ~~~~c~~~~l~~-ip~~l~--~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~i~~i~~---------------   69 (570)
T 2z63_A           10 ITYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRH--LGSYSFFSFPELQVLDLSRCEIQTIED---------------   69 (570)
T ss_dssp             TEEECCSSCCSS-CCSSSC--SSCCEEECCSCCCCE--ECTTTTTTCSSCCEEECTTCCCCEECT---------------
T ss_pred             cEEEeCCCCccc-cCCCcc--ccccEEEccCCccCc--cChhHhhCCCCceEEECCCCcCCccCc---------------
Confidence            345555544433 233221  345555555555544  333345555555555555554443322               


Q ss_pred             hhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhh
Q 041908          171 MNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLA  250 (883)
Q Consensus       171 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~  250 (883)
                        ..+.++++|++|+|++|++++..|..|+++++|++|++++|+++ .+|...++++++|++|++++|.++         
T Consensus        70 --~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~---------  137 (570)
T 2z63_A           70 --GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ---------  137 (570)
T ss_dssp             --TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCC---------
T ss_pred             --ccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCccc---------
Confidence              33444455555555555544444444444555555555555444 333223444444444444444433         


Q ss_pred             cCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCc-cCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcE
Q 041908          251 NHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISG-TIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEF  329 (883)
Q Consensus       251 ~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~  329 (883)
                                                             + .+|..+..+++|++|++++|.+++..|..+. .+++|..
T Consensus       138 ---------------------------------------~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~  177 (570)
T 2z63_A          138 ---------------------------------------SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPL  177 (570)
T ss_dssp             ---------------------------------------CCCCCGGGGGCTTCCEEECTTSCCCEECGGGGH-HHHTCTT
T ss_pred             ---------------------------------------eecChhhhcccCCCCEEeCcCCccceecHHHcc-chhccch
Confidence                                                   2 2456666677777777777777643333322 3333300


Q ss_pred             EEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCC-CCCccccccCcccEEeccCCc
Q 041908          330 LFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEG-SIPPSMGYTVRLLFLDLSSNN  408 (883)
Q Consensus       330 L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~  408 (883)
                                         ..+++++++|.+.+..|..+.  ..+|++|++++|.... .++..+..++.++.+.+....
T Consensus       178 -------------------~~~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~  236 (570)
T 2z63_A          178 -------------------LNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE  236 (570)
T ss_dssp             -------------------CCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE
T ss_pred             -------------------hhhhcccCCCCceecCHHHhc--cCcceeEecccccccccchhhhhcCccccceeeecccc
Confidence                               002344444444444444433  2356677776664321 234445555555555544322


Q ss_pred             ccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCc-ccCccccccccCCCCCCEEEccCCccCCCcc
Q 041908          409 FSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDN-QFTGRLEEGLLNAPSLHILDVSNNMLSGQLP  487 (883)
Q Consensus       409 l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p  487 (883)
                      +..         ...++  .+...     ....+..+ .++.+++.++ .+.+..|..+..+++|++|++++|.+. .+|
T Consensus       237 ~~~---------~~~l~--~~~~~-----~~~~l~~l-~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~  298 (570)
T 2z63_A          237 FRN---------EGNLE--KFDKS-----ALEGLCNL-TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVK  298 (570)
T ss_dssp             CCC---------CSSCE--ECCTT-----TTGGGGGS-EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCC
T ss_pred             ccC---------chhhh--hcchh-----hhcccccc-chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhh
Confidence            210         00111  00111     11111111 3566777776 667777788888888888888888887 577


Q ss_pred             hhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCcccccc--chhhhcC
Q 041908          488 HWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSI--PSALFQS  565 (883)
Q Consensus       488 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~--p~~~~~~  565 (883)
                      ..+..+ +|++|++++|.+. .+|.  ..+++|+.|++++|.+.+..+.  ..+++|++|++++|++++..  |..+..+
T Consensus       299 ~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  372 (570)
T 2z63_A          299 DFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGT  372 (570)
T ss_dssp             BCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTC
T ss_pred             hhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccccccccc
Confidence            778777 8889999888887 4454  4678889999999988776664  67889999999999988654  7889999


Q ss_pred             CCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCc-hhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCC
Q 041908          566 SQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIP-QQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEG  644 (883)
Q Consensus       566 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p-~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~  644 (883)
                      ++|++|++++|++++..+. +..+++|++|++++|++.+..| ..+..+++|+.|++++|.+++..|..+..        
T Consensus       373 ~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------  443 (570)
T 2z63_A          373 TSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--------  443 (570)
T ss_dssp             SCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT--------
T ss_pred             CccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc--------
Confidence            9999999999999965444 8999999999999999998766 57889999999999999998776655432        


Q ss_pred             CCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCc-ccC
Q 041908          645 DPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELT-GEI  723 (883)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-g~i  723 (883)
                                                                                   +++|+.|+|++|+++ +.+
T Consensus       444 -------------------------------------------------------------l~~L~~L~l~~n~l~~~~~  462 (570)
T 2z63_A          444 -------------------------------------------------------------LSSLEVLKMAGNSFQENFL  462 (570)
T ss_dssp             -------------------------------------------------------------CTTCCEEECTTCEEGGGEE
T ss_pred             -------------------------------------------------------------CCcCcEEECcCCcCccccc
Confidence                                                                         567899999999998 689


Q ss_pred             cccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCCCccC
Q 041908          724 PSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQF  801 (883)
Q Consensus       724 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~  801 (883)
                      |..++.+++|++|+|++|++++.+|..|+++++|++|++++|++++.+|..+.++++|+.+++++|+++|.+|..+.+
T Consensus       463 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~  540 (570)
T 2z63_A          463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  540 (570)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             hhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999987554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.6e-48  Score=457.21  Aligned_cols=498  Identities=21%  Similarity=0.198  Sum_probs=415.2

Q ss_pred             CCCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhccc
Q 041908           88 KQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNK  167 (883)
Q Consensus        88 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~  167 (883)
                      +++++||+++|.+.+..+..|.++++|++|+|++|.+.+  ++...|+++++|++|+|++|.+.+..|            
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--i~~~~~~~l~~L~~L~L~~n~l~~~~~------------   93 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSLAL------------   93 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCCCCEECT------------
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc--cCcccccCchhCCEEeCcCCcCCccCH------------
Confidence            579999999999999888899999999999999999987  665789999999999999999987666            


Q ss_pred             ccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcccc-ccChhhhcCCCCCCEEeccCCcCccccCh
Q 041908          168 CREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSG-NLPISVFANLTSLEYLSLSGNNFQGSFSL  246 (883)
Q Consensus       168 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~g~~~~  246 (883)
                           ..+.++++|++|++++|++++..+..++++++|++|++++|.+++ .+| ..|+++++|++|++++|++++ ++.
T Consensus        94 -----~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp-~~~~~l~~L~~L~l~~n~l~~-~~~  166 (570)
T 2z63_A           94 -----GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQS-IYC  166 (570)
T ss_dssp             -----TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECTTSCCCE-ECG
T ss_pred             -----hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecCh-hhhcccCCCCEEeCcCCccce-ecH
Confidence                 778999999999999999997666679999999999999999985 478 789999999999999999984 444


Q ss_pred             HhhhcCCCC----cEEEccCcccccCCCCCCCCccceEEEcccCcCC-ccCchhhhcCCCCCEEEccCCCCcCCcchHHH
Q 041908          247 SVLANHSRL----EVLQISRLQIETENFPWLPRFQLKVLNLRRCNIS-GTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLL  321 (883)
Q Consensus       247 ~~l~~l~~L----~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~  321 (883)
                      ..++.+++|    +.+++++|.+....+..+...+|++|++++|... ..++..+..+++++..++....+..       
T Consensus       167 ~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~-------  239 (570)
T 2z63_A          167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN-------  239 (570)
T ss_dssp             GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC-------
T ss_pred             HHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccC-------
Confidence            667777777    7888888887766655555557777777776543 2345556666666665554332221       


Q ss_pred             hcCCCCcEEEcccccccccccCCCCCCCccEEEccCC-ccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCccc
Q 041908          322 QNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNN-NFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLL  400 (883)
Q Consensus       322 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n-~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  400 (883)
                        ...++  .+....+.+..     --.++.++++++ .+.+..|..+.. +++|++|++++|.++ .+|..+..+ +|+
T Consensus       240 --~~~l~--~~~~~~~~~l~-----~l~l~~l~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~-~l~~~~~~~-~L~  307 (570)
T 2z63_A          240 --EGNLE--KFDKSALEGLC-----NLTIEEFRLAYLDYYLDDIIDLFNC-LTNVSSFSLVSVTIE-RVKDFSYNF-GWQ  307 (570)
T ss_dssp             --CSSCE--ECCTTTTGGGG-----GSEEEEEEEEETTEEESCSTTTTGG-GTTCSEEEEESCEEC-SCCBCCSCC-CCS
T ss_pred             --chhhh--hcchhhhcccc-----ccchhhhhhhcchhhhhhchhhhcC-cCcccEEEecCccch-hhhhhhccC-Ccc
Confidence              01111  01111111110     113567777777 677777877765 899999999999998 688888888 999


Q ss_pred             EEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccc--cccccCCCCCCEEEcc
Q 041908          401 FLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRL--EEGLLNAPSLHILDVS  478 (883)
Q Consensus       401 ~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~ls  478 (883)
                      +|++++|.+. .+|.   ..+++|+.|++++|.+.+..+.  ..+++|++|++++|++++..  +..+..+++|++|+++
T Consensus       308 ~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~  381 (570)
T 2z63_A          308 HLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS  381 (570)
T ss_dssp             EEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECC
T ss_pred             EEeeccCccc-ccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECC
Confidence            9999999998 7776   4689999999999998877655  67899999999999998664  6788899999999999


Q ss_pred             CCccCCCcchhhhCCCCCCEEECCCCcCCCCCC-ccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccc-c
Q 041908          479 NNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVS-VPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLN-G  556 (883)
Q Consensus       479 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~  556 (883)
                      +|.+.+..+ .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +
T Consensus       382 ~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  460 (570)
T 2z63_A          382 FNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  460 (570)
T ss_dssp             SCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc
Confidence            999986544 49999999999999999998766 56889999999999999999999999999999999999999998 6


Q ss_pred             ccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCc
Q 041908          557 SIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPS  632 (883)
Q Consensus       557 ~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~  632 (883)
                      .+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..|.
T Consensus       461 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            7899999999999999999999999899999999999999999999998888899999999999999999998875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.5e-47  Score=448.44  Aligned_cols=485  Identities=18%  Similarity=0.177  Sum_probs=309.7

Q ss_pred             CCccceeecCCCCCCCCCC--cCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEE
Q 041908           66 CCSWERIKCNVTTANYNNN--GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVL  143 (883)
Q Consensus        66 cc~w~gv~C~~~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L  143 (883)
                      .|.|.|+ |+....+...+  .-.++|++|++++|.+.+..|..|.++++|++|+|++|++.+  ++++.|+++++|++|
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L   79 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT--IEGDAFYSLGSLEHL   79 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEE
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc--cChhhccccccCCEE
Confidence            4999998 86543211111  112456666666666655555556666666666666666554  333455566666666


Q ss_pred             ECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcCCC-CCCccccCCCCCCEEEccCCccccccChh
Q 041908          144 DLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDG-SLPQCLSNLTYLRVLDLTSNQLSGNLPIS  222 (883)
Q Consensus       144 ~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~  222 (883)
                      |+++|.+.+..+                 ..++++++|++|+|++|.+++ ..|..++++++|++|++++|.+.+.+|..
T Consensus        80 ~Ls~n~l~~~~~-----------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~  142 (549)
T 2z81_A           80 DLSDNHLSSLSS-----------------SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI  142 (549)
T ss_dssp             ECTTSCCCSCCH-----------------HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred             ECCCCccCccCH-----------------HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHh
Confidence            666665554443                 445555566666666655554 23445555555555555555533345434


Q ss_pred             hhcCCCCCCEEeccCCcCccccChHhhhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCC
Q 041908          223 VFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDL  302 (883)
Q Consensus       223 ~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L  302 (883)
                      .++++++|++|++++|++++                                                ..|..+..+++|
T Consensus       143 ~~~~l~~L~~L~L~~n~l~~------------------------------------------------~~~~~l~~l~~L  174 (549)
T 2z81_A          143 DFAGLTSLNELEIKALSLRN------------------------------------------------YQSQSLKSIRDI  174 (549)
T ss_dssp             TTTTCCEEEEEEEEETTCCE------------------------------------------------ECTTTTTTCSEE
T ss_pred             hhhcccccCeeeccCCcccc------------------------------------------------cChhhhhccccC
Confidence            45555555555555555543                                                333444444444


Q ss_pred             CEEEccCCCCcCCcchHHHhcCCCCcEEEcccccccccc----cCCCCCCCccEEEccCCccccccchhhh---cCCCCC
Q 041908          303 RYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLL----HLPDSKRDLLHLVISNNNFIGMLPDNFG---MILPEL  375 (883)
Q Consensus       303 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~~~L~~L~ls~n~l~~~~p~~~~---~~l~~L  375 (883)
                      ++|++++|.+. .+|.+++..+++|++|++++|.+++..    .....+++|++|++++|.+.+..+..+.   ..+++|
T Consensus       175 ~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L  253 (549)
T 2z81_A          175 HHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL  253 (549)
T ss_dssp             EEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred             ceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence            44444444443 444444444555555555555554432    1122455666666666666655444332   225677


Q ss_pred             cEEeCCCCcCCCCC------CccccccCcccEEeccCCcccCc-----cchhHhhCCCCCCEEEccCcccCCcCcccc-c
Q 041908          376 VYLDMSQNSFEGSI------PPSMGYTVRLLFLDLSSNNFSGE-----LPKQFLTGCVSLAFMNVSHNYFGGQIFPKY-M  443 (883)
Q Consensus       376 ~~L~L~~n~l~~~~------p~~l~~l~~L~~L~Ls~n~l~~~-----ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~  443 (883)
                      +.+++++|.+.+..      ...+..+.+|+.|++.++.+...     ++. ++....+|+.|++++|.+. .+|..+ .
T Consensus       254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~-~~~~~~~L~~L~l~~n~l~-~ip~~~~~  331 (549)
T 2z81_A          254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST-VYSLLEKVKRITVENSKVF-LVPCSFSQ  331 (549)
T ss_dssp             CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCH-HHHHSTTCCEEEEESSCCC-CCCHHHHH
T ss_pred             cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchh-hhhhcccceEEEeccCccc-cCCHHHHh
Confidence            77777777665421      12345566777777777765421     111 1234567888888888776 345444 4


Q ss_pred             CCCCCCeEEccCcccCccccc---cccCCCCCCEEEccCCccCCCcc--hhhhCCCCCCEEECCCCcCCCCCCccccCCC
Q 041908          444 SMTQLAWLYLNDNQFTGRLEE---GLLNAPSLHILDVSNNMLSGQLP--HWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQ  518 (883)
Q Consensus       444 ~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~ls~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  518 (883)
                      .+++|++|++++|++++.+|.   .+..+++|++|++++|.+++..+  ..+..+++|++|++++|+++ .+|..+..++
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~  410 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE  410 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT
T ss_pred             cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccc
Confidence            678888888888888876643   36677888888888888875432  45788888999999998888 5677788888


Q ss_pred             cccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEcc
Q 041908          519 VARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLR  598 (883)
Q Consensus       519 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  598 (883)
                      +|++|++++|++++.. ..+  .++|++|++++|++++..    ..+++|++|++++|+++ .+|. ...+++|++|+|+
T Consensus       411 ~L~~L~Ls~N~l~~l~-~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls  481 (549)
T 2z81_A          411 KMRFLNLSSTGIRVVK-TCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKIS  481 (549)
T ss_dssp             TCCEEECTTSCCSCCC-TTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECC
T ss_pred             cccEEECCCCCccccc-chh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecC
Confidence            8999999999886432 222  258999999999998643    47889999999999998 6776 4678999999999


Q ss_pred             CCcccccCchhhcCCCCCCEEEcCCCcCCCCCC
Q 041908          599 GNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIP  631 (883)
Q Consensus       599 ~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p  631 (883)
                      +|++++.+|..+..+++|+.|++++|++.+..|
T Consensus       482 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          482 RNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             SSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            999999888889999999999999999988776

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.6e-47  Score=448.16  Aligned_cols=487  Identities=18%  Similarity=0.195  Sum_probs=356.1

Q ss_pred             CCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcCCCCcEEEc
Q 041908          181 LVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQI  260 (883)
Q Consensus       181 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L  260 (883)
                      ....++++++++ .+|..+.  ++|++|++++|++++..| ..|+++++|++|++++|++++ ++...+.++++|+    
T Consensus         7 ~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~----   77 (549)
T 2z81_A            7 SGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSSRINT-IEGDAFYSLGSLE----   77 (549)
T ss_dssp             TSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECS-STTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCC----
T ss_pred             CceEECCCCccc-cccccCC--CCccEEECcCCccCccCh-hhhhcCCcccEEECCCCCcCc-cChhhccccccCC----
Confidence            334566677776 5665553  677777777777774444 667777777777777777663 2223333333333    


Q ss_pred             cCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcC-CcchHHHhcCCCCcEEEcccccccc
Q 041908          261 SRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAG-TFPTWLLQNNTKLEFLFLFNNFLKG  339 (883)
Q Consensus       261 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~  339 (883)
                                         +|++++|.+++..|..++.+++|++|++++|.+++ .+|..                    
T Consensus        78 -------------------~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------------------  118 (549)
T 2z81_A           78 -------------------HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL--------------------  118 (549)
T ss_dssp             -------------------EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCS--------------------
T ss_pred             -------------------EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhh--------------------
Confidence                               33334444444455556666666666666666653 12222                    


Q ss_pred             cccCCCCCCCccEEEccCCccccccch-hhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHh
Q 041908          340 LLHLPDSKRDLLHLVISNNNFIGMLPD-NFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFL  418 (883)
Q Consensus       340 ~~~~~~~~~~L~~L~ls~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~  418 (883)
                          ...+++|++|++++|.+.+.+|. .+. .+++|++|++++|.+++..|..++.+++|++|+++.|.+. .+|..++
T Consensus       119 ----~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~  192 (549)
T 2z81_A          119 ----FPNLTNLQTLRIGNVETFSEIRRIDFA-GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFA  192 (549)
T ss_dssp             ----CTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHH
T ss_pred             ----hhccCCccEEECCCCccccccCHhhhh-cccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhH
Confidence                23455566666666664455553 444 4888889999999888888888888889999999988886 7777777


Q ss_pred             hCCCCCCEEEccCcccCCcC---cccccCCCCCCeEEccCcccCccccc----cccCCCCCCEEEccCCccCCCc-----
Q 041908          419 TGCVSLAFMNVSHNYFGGQI---FPKYMSMTQLAWLYLNDNQFTGRLEE----GLLNAPSLHILDVSNNMLSGQL-----  486 (883)
Q Consensus       419 ~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~ls~n~l~~~~-----  486 (883)
                      ..+++|++|++++|++++..   ......+++|+.|++++|.+++..+.    .+..+++|+.+++++|.+.+..     
T Consensus       193 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~  272 (549)
T 2z81_A          193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS  272 (549)
T ss_dssp             HSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCC
T ss_pred             hhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccccc
Confidence            78889999999999888752   12234577899999999988765443    3456788999999999876531     


Q ss_pred             -chhhhCCCCCCEEECCCCcCCCC-----CCccccCCCcccEEecCCCcCcCcccccc-ccCCCcCeeecccCccccccc
Q 041908          487 -PHWVGNFSNLDVLLMSRNSLEGD-----VSVPLSNLQVARILDISENKLYGPLEFSF-NHSSSLWHLFLHNNSLNGSIP  559 (883)
Q Consensus       487 -p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~p  559 (883)
                       ...+..+.+|+.|++.++.+...     ++..+....+|+.|++++|++. .+|..+ ..+++|++|++++|++++.+|
T Consensus       273 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~  351 (549)
T 2z81_A          273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYL  351 (549)
T ss_dssp             TTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHH
T ss_pred             chhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccc
Confidence             12345678889999888876532     2222334567899999999886 455544 578899999999999988775


Q ss_pred             hh---hhcCCCCCEEeccCCcCCccCC--ccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCccc
Q 041908          560 SA---LFQSSQLMTLDLRDNEFSGNIP--PLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCF  634 (883)
Q Consensus       560 ~~---~~~~~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~  634 (883)
                      ..   +..+++|++|++++|++++..+  ..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++ +|.+ 
T Consensus       352 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~-  428 (549)
T 2z81_A          352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTC-  428 (549)
T ss_dssp             HHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTT-
T ss_pred             cchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccch-
Confidence            43   6778899999999999986432  45788899999999999998 688888889999999999998763 2221 


Q ss_pred             ccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEc
Q 041908          635 TNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDL  714 (883)
Q Consensus       635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL  714 (883)
                                                                                            ..++|+.|||
T Consensus       429 ----------------------------------------------------------------------~~~~L~~L~L  438 (549)
T 2z81_A          429 ----------------------------------------------------------------------IPQTLEVLDV  438 (549)
T ss_dssp             ----------------------------------------------------------------------SCTTCSEEEC
T ss_pred             ----------------------------------------------------------------------hcCCceEEEC
Confidence                                                                                  1246889999


Q ss_pred             cCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCccc
Q 041908          715 SSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGP  794 (883)
Q Consensus       715 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~  794 (883)
                      ++|++++.+    +.+++|++|+|++|+++ .+|. .+.+++|++|||++|++++.+|..+..+++|+.|++++|+++|.
T Consensus       439 s~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  512 (549)
T 2z81_A          439 SNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  512 (549)
T ss_dssp             CSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred             CCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence            999999754    57899999999999999 6776 57899999999999999999999999999999999999999999


Q ss_pred             CCCCccC
Q 041908          795 TPNTKQF  801 (883)
Q Consensus       795 ip~~~~~  801 (883)
                      +|....+
T Consensus       513 ~~~~~~l  519 (549)
T 2z81_A          513 CPRIDYL  519 (549)
T ss_dssp             HHHHHHH
T ss_pred             CccHHHH
Confidence            9854433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.4e-45  Score=437.89  Aligned_cols=518  Identities=21%  Similarity=0.177  Sum_probs=326.7

Q ss_pred             CCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccc
Q 041908           89 QLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKC  168 (883)
Q Consensus        89 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~  168 (883)
                      ++++|||++|.|++..+..|.++++|++|+|++|++++  +|..+|.++++|++|+|++|++.+..+             
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~--i~~~~f~~L~~L~~L~Ls~N~l~~l~~-------------  117 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSLAL-------------  117 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCCCCEECG-------------
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC--cChhHhcCCCCCCEEEccCCcCCCCCH-------------
Confidence            56666666666655555556666666666666666554  444455556666666666555543332             


Q ss_pred             cchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcccc-ccChhhhcCCCCCCEEeccCCcCccccChH
Q 041908          169 REMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSG-NLPISVFANLTSLEYLSLSGNNFQGSFSLS  247 (883)
Q Consensus       169 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~  247 (883)
                          ..|.++++|++|+|++|++++..+..|+++++|++|++++|.+++ .+| ..++.+++|++|++++|++++.    
T Consensus       118 ----~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~L~~N~l~~~----  188 (635)
T 4g8a_A          118 ----GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSI----  188 (635)
T ss_dssp             ----GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECCSSCCCEE----
T ss_pred             ----HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCc-hhhccchhhhhhcccCcccccc----
Confidence                345555555555555555554444455555555555555555542 233 4445555555555555555421    


Q ss_pred             hhhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCC----CCCEEEccCCCCcCCcchHHHhc
Q 041908          248 VLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQY----DLRYIDLSHNNLAGTFPTWLLQN  323 (883)
Q Consensus       248 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~----~L~~L~Ls~n~l~~~~p~~~~~~  323 (883)
                                                                  .+..+..+.    ....++++.|.+. .++...+  
T Consensus       189 --------------------------------------------~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~--  221 (635)
T 4g8a_A          189 --------------------------------------------YCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF--  221 (635)
T ss_dssp             --------------------------------------------CGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTT--
T ss_pred             --------------------------------------------ccccccchhhhhhhhhhhhcccCccc-ccCcccc--
Confidence                                                        122222111    2345666666665 3333222  


Q ss_pred             CCCCcEEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcC------CCCCCccccccC
Q 041908          324 NTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSF------EGSIPPSMGYTV  397 (883)
Q Consensus       324 l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l------~~~~p~~l~~l~  397 (883)
                                            ....++.+++.+|.....++......+..++...+..+..      .......+....
T Consensus       222 ----------------------~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~  279 (635)
T 4g8a_A          222 ----------------------KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC  279 (635)
T ss_dssp             ----------------------TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGG
T ss_pred             ----------------------cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccccc
Confidence                                  2223344555555444333333333355555554433222      112222333344


Q ss_pred             cccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEc
Q 041908          398 RLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDV  477 (883)
Q Consensus       398 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  477 (883)
                      .+...++..+......                      ......+..+.+++.+.+.++.+....+  +.....|+.|++
T Consensus       280 ~l~~~~l~~~~~~~~~----------------------~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~L~~L~l  335 (635)
T 4g8a_A          280 NLTIEEFRLAYLDYYL----------------------DGIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLEL  335 (635)
T ss_dssp             GSEEEEEEEECCCSCE----------------------EECTTTTGGGTTCSEEEEESCEEEECGG--GGSCCCCSEEEE
T ss_pred             chhhhhhhhhhhcccc----------------------cchhhhhhhhcccccccccccccccccc--cccchhhhhhhc
Confidence            4444444333221110                      0112223344556666666665553322  344566777777


Q ss_pred             cCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcC--ccccccccCCCcCeeecccCccc
Q 041908          478 SNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYG--PLEFSFNHSSSLWHLFLHNNSLN  555 (883)
Q Consensus       478 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~  555 (883)
                      .+|.+.+..+   ..+..|+.+++..|.....  .....+++|+.+++++|.+..  ..+..+..+.+|+.+++..|...
T Consensus       336 ~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~  410 (635)
T 4g8a_A          336 VNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI  410 (635)
T ss_dssp             ESCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE
T ss_pred             ccccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc
Confidence            7777664332   2356677777777765542  234467778888888877653  33445566778888888888876


Q ss_pred             cccchhhhcCCCCCEEeccCCcCCccCC-ccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCC-CCCcc
Q 041908          556 GSIPSALFQSSQLMTLDLRDNEFSGNIP-PLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDG-SIPSC  633 (883)
Q Consensus       556 ~~~p~~~~~~~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~-~~p~~  633 (883)
                      + ++..+..+++|+.++++.|+.....+ ..+..+++++.++++.|++.+..|..+..++.|+.|++++|++.. .+|..
T Consensus       411 ~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~  489 (635)
T 4g8a_A          411 T-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI  489 (635)
T ss_dssp             E-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred             c-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchh
Confidence            3 45567788889999998888776554 457788999999999999998888889999999999999997543 23333


Q ss_pred             cccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEE
Q 041908          634 FTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLD  713 (883)
Q Consensus       634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  713 (883)
                      +.                                                                     .+++|+.||
T Consensus       490 ~~---------------------------------------------------------------------~l~~L~~L~  500 (635)
T 4g8a_A          490 FT---------------------------------------------------------------------ELRNLTFLD  500 (635)
T ss_dssp             CT---------------------------------------------------------------------TCTTCCEEE
T ss_pred             hh---------------------------------------------------------------------hccccCEEE
Confidence            32                                                                     257889999


Q ss_pred             ccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCC-CCCcEEEccCCcCc
Q 041908          714 LSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSEL-NYLAIFNVSYNDLS  792 (883)
Q Consensus       714 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l-~~L~~l~ls~N~l~  792 (883)
                      |++|+|++.+|..|+++++|++|+|++|+|++.+|..|+++++|++|||++|+|++.+|..+..+ ++|++|++++|+++
T Consensus       501 Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          501 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             CCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999998 68999999999999


Q ss_pred             ccCCCC
Q 041908          793 GPTPNT  798 (883)
Q Consensus       793 g~ip~~  798 (883)
                      |.+...
T Consensus       581 C~C~~~  586 (635)
T 4g8a_A          581 CTCEHQ  586 (635)
T ss_dssp             CSGGGH
T ss_pred             ccCCcH
Confidence            987643

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2e-47  Score=452.29  Aligned_cols=457  Identities=16%  Similarity=0.186  Sum_probs=283.4

Q ss_pred             cceEEEcccCcCCccCchhhhcCCCCCEEEccCCCC------cC------CcchHHHhcCCCCcEEEcccccccccccCC
Q 041908          277 QLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNL------AG------TFPTWLLQNNTKLEFLFLFNNFLKGLLHLP  344 (883)
Q Consensus       277 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l------~~------~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~  344 (883)
                      +++.|+|+++.+.|.+|..++.+++|++|+|++|.+      .|      .+|...   +..|+ +++++|.+.+.+...
T Consensus        82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGGG
T ss_pred             CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchhh
Confidence            678889999999999999999999999999999976      33      455543   23344 555555444332110


Q ss_pred             C--CCCCccEEEccCCccccccchhhhcCCCCCcEEeCC--CCcCCCCCCccccccCcccEEeccCCcccCc--------
Q 041908          345 D--SKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMS--QNSFEGSIPPSMGYTVRLLFLDLSSNNFSGE--------  412 (883)
Q Consensus       345 ~--~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~--~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--------  412 (883)
                      .  .+..+..+++....+..       .....++.+.+.  .|++++ +|..++++++|++|++++|.++|.        
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~-------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~  229 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKK-------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN  229 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCC-------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred             HHHHHHHHhhcCcccccccc-------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccc
Confidence            0  00111111111100000       001122222222  455665 666666666666666666666653        


Q ss_pred             ---------cchhHh-hCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcc-cCc-cccccccCC------CCCCE
Q 041908          413 ---------LPKQFL-TGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQ-FTG-RLEEGLLNA------PSLHI  474 (883)
Q Consensus       413 ---------ip~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~  474 (883)
                               +|..+. ..+++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+..+      ++|++
T Consensus       230 ~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~  309 (636)
T 4eco_A          230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI  309 (636)
T ss_dssp             TTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred             cccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence                     665541 156677777777777766677667777777777777776 666 666666554      67777


Q ss_pred             EEccCCccCCCcch--hhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCC-cCeeeccc
Q 041908          475 LDVSNNMLSGQLPH--WVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSS-LWHLFLHN  551 (883)
Q Consensus       475 L~ls~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~-L~~L~L~~  551 (883)
                      |++++|.++ .+|.  .++++++|++|++++|+++|.+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++
T Consensus       310 L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~  386 (636)
T 4eco_A          310 IYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH  386 (636)
T ss_dssp             EECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCS
T ss_pred             EECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccC
Confidence            777777777 6666  67777777777777777776666 6777777777777777776 56666767766 77777777


Q ss_pred             CccccccchhhhcCC--CCCEEeccCCcCCccCCcccc-------CCCCCcEEEccCCcccccCch-hhcCCCCCCEEEc
Q 041908          552 NSLNGSIPSALFQSS--QLMTLDLRDNEFSGNIPPLIN-------EDSNLRALLLRGNNLQGNIPQ-QLCHLRKIAIVDI  621 (883)
Q Consensus       552 n~l~~~~p~~~~~~~--~L~~L~Ls~N~l~~~~p~~l~-------~l~~L~~L~L~~N~l~g~~p~-~l~~l~~L~~L~l  621 (883)
                      |.++ .+|..+..++  +|++|++++|++++.+|..+.       .+++|++|++++|+++ .+|. .+..+++|+.|++
T Consensus       387 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~L  464 (636)
T 4eco_A          387 NKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINL  464 (636)
T ss_dssp             SCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEEC
T ss_pred             CcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEEC
Confidence            7776 6666665543  677777777777777777666       6667777777777777 3444 3445777777777


Q ss_pred             CCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccc
Q 041908          622 SYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESY  701 (883)
Q Consensus       622 s~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  701 (883)
                      ++|+++ .+|........                      +                                       
T Consensus       465 s~N~l~-~i~~~~~~~~~----------------------~---------------------------------------  482 (636)
T 4eco_A          465 MGNMLT-EIPKNSLKDEN----------------------E---------------------------------------  482 (636)
T ss_dssp             CSSCCS-BCCSSSSEETT----------------------E---------------------------------------
T ss_pred             CCCCCC-CcCHHHhcccc----------------------c---------------------------------------
Confidence            777776 55543211000                      0                                       


Q ss_pred             cccccccccEEEccCCcCcccCccccc--ccccCCeeeCCCCcCCcCCCccccCcCCCCEEEC------CCCcccccCCc
Q 041908          702 KGGVLEYMTGLDLSSNELTGEIPSAIG--YLQELHALNLSHNHLSGSIPRSFSNLKMIESMDL------SYNKLRGQIPL  773 (883)
Q Consensus       702 ~~~~l~~L~~LdLs~N~l~g~ip~~l~--~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdL------s~N~Lsg~ip~  773 (883)
                      ....+++|+.|||++|+++ .+|..+.  .+++|+.|+|++|++++ +|..++++++|+.|+|      ++|++.+.+|.
T Consensus       483 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~  560 (636)
T 4eco_A          483 NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE  560 (636)
T ss_dssp             ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred             cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChH
Confidence            0011345666777777776 5666665  66777777777777765 6666667777777766      44666666777


Q ss_pred             cccCCCCCcEEEccCCcCcccCCCCccCCCCCCcccCCCcCCC
Q 041908          774 ELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLC  816 (883)
Q Consensus       774 ~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc  816 (883)
                      .+.++++|+.|++++|++ +.||.... ..+....+.+|+..|
T Consensus       561 ~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          561 GITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNIS  601 (636)
T ss_dssp             TGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCE
T ss_pred             HHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCcc
Confidence            776677777777777777 55665421 334444455665555

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.2e-46  Score=431.37  Aligned_cols=439  Identities=19%  Similarity=0.200  Sum_probs=369.4

Q ss_pred             ccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCCCCccEEEc
Q 041908          276 FQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVI  355 (883)
Q Consensus       276 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l  355 (883)
                      .+|++|++++|.+.+..|..+..+++|++|++++|++++..|..+ .++++|++|++++|.++.++..  .+++|++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLSHNKLVKISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGG-TTCTTCCEEECCSSCCCEEECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHh-hcccCCCEEecCCCceeecCcc--ccCCccEEec
Confidence            578888888888888888899999999999999999986556655 4899999999999999987655  7899999999


Q ss_pred             cCCcccc-ccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcc--cEEeccCCcc--cCccchhHhhCCC-CCCEEEc
Q 041908          356 SNNNFIG-MLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRL--LFLDLSSNNF--SGELPKQFLTGCV-SLAFMNV  429 (883)
Q Consensus       356 s~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~Ls~n~l--~~~ip~~~~~~l~-~L~~L~L  429 (883)
                      ++|.+.+ .+|..++. +++|++|++++|.+++   ..+..+++|  ++|++++|.+  .+..|..+ ..+. ....+++
T Consensus        98 ~~N~l~~~~~p~~~~~-l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l-~~l~~~~l~l~l  172 (520)
T 2z7x_B           98 SFNAFDALPICKEFGN-MSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGL-QDFNTESLHIVF  172 (520)
T ss_dssp             CSSCCSSCCCCGGGGG-CTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTT-TTCCEEEEEEEC
T ss_pred             cCCccccccchhhhcc-CCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccc-cccccceEEEEe
Confidence            9999987 57888876 9999999999999986   457778888  9999999999  76777654 2333 3446788


Q ss_pred             cCcccCCcCcc-cccCCCCCCeEEccCcc-------cCccccccccCCCCCCEEEccCCccCCCcchhhh---CCCCCCE
Q 041908          430 SHNYFGGQIFP-KYMSMTQLAWLYLNDNQ-------FTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVG---NFSNLDV  498 (883)
Q Consensus       430 s~n~l~~~~~~-~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~---~l~~L~~  498 (883)
                      ++|.+.+.++. .+..+++|+.+++++|.       +.+.+| .+..+++|+.|++++|.+++..+..+.   ..++|++
T Consensus       173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~  251 (520)
T 2z7x_B          173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY  251 (520)
T ss_dssp             CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred             ccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence            88988776554 56789999999999997       777776 788899999999999998764333222   2569999


Q ss_pred             EECCCCcCCCCCCccc-----cCCCcccEEecCCCcCcCccc-cccccC---CCcCeeecccCccccccchhhhcCCCCC
Q 041908          499 LLMSRNSLEGDVSVPL-----SNLQVARILDISENKLYGPLE-FSFNHS---SSLWHLFLHNNSLNGSIPSALFQSSQLM  569 (883)
Q Consensus       499 L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~~-~~~~~~---~~L~~L~L~~n~l~~~~p~~~~~~~~L~  569 (883)
                      |++++|+++|.+|..+     ..+++|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+.+..  .+..+++|+
T Consensus       252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~  327 (520)
T 2z7x_B          252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFL  327 (520)
T ss_dssp             EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCC
T ss_pred             EEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCccc
Confidence            9999999999999988     8999999999999998  445 344333   57999999999987432  126789999


Q ss_pred             EEeccCCcCCccCCccccCCCCCcEEEccCCcccc--cCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCC
Q 041908          570 TLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQG--NIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPF  647 (883)
Q Consensus       570 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g--~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~  647 (883)
                      +|++++|++++.+|..++.+++|++|++++|++++  .+|..+..+++|+.||+++|++++.+|....            
T Consensus       328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~------------  395 (520)
T 2z7x_B          328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC------------  395 (520)
T ss_dssp             EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC------------
T ss_pred             EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh------------
Confidence            99999999999999999999999999999999997  6778899999999999999999876664310            


Q ss_pred             CCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccc
Q 041908          648 NGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAI  727 (883)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l  727 (883)
                                                                              ..+++|+.|+|++|++++.+|..+
T Consensus       396 --------------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~l  419 (520)
T 2z7x_B          396 --------------------------------------------------------SWTKSLLSLNMSSNILTDTIFRCL  419 (520)
T ss_dssp             --------------------------------------------------------CCCTTCCEEECCSSCCCGGGGGSC
T ss_pred             --------------------------------------------------------ccCccCCEEECcCCCCCcchhhhh
Confidence                                                                    115678999999999999998877


Q ss_pred             cccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCcc-ccCCCCCcEEEccCCcCcccCCCCc
Q 041908          728 GYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLE-LSELNYLAIFNVSYNDLSGPTPNTK  799 (883)
Q Consensus       728 ~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~-l~~l~~L~~l~ls~N~l~g~ip~~~  799 (883)
                      .  ++|++|+|++|+++ .+|..+..+++|++|||++|++++ +|.. +..+++|+.|++++|+++|.++..+
T Consensus       420 ~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~  488 (520)
T 2z7x_B          420 P--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRID  488 (520)
T ss_dssp             C--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHHHH
T ss_pred             c--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCchH
Confidence            5  79999999999999 889888899999999999999994 6665 8999999999999999999887543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-45  Score=429.17  Aligned_cols=459  Identities=19%  Similarity=0.176  Sum_probs=278.8

Q ss_pred             CEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccc
Q 041908           91 KILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCRE  170 (883)
Q Consensus        91 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~  170 (883)
                      ++||+++|++.. +|..+.  ++|++|+|++|.+.+  ++...+.++++|++|+|++|++.+..|               
T Consensus         3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------------   62 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISE--LWTSDILSLSKLRILIISHNRIQYLDI---------------   62 (520)
T ss_dssp             CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCC--CCHHHHTTCTTCCEEECCSSCCCEEEG---------------
T ss_pred             ceEecCCCCccc-cccccc--ccccEEECCCCcccc--cChhhccccccccEEecCCCccCCcCh---------------
Confidence            467788777774 555554  677777777777766  443567777777777777777766555               


Q ss_pred             hhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcccc-ccChhhhcCCCCCCEEeccCCcCccccChHhh
Q 041908          171 MNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSG-NLPISVFANLTSLEYLSLSGNNFQGSFSLSVL  249 (883)
Q Consensus       171 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l  249 (883)
                        ..+.++++|++|+|++|+++ .+|..  .+++|++|++++|++++ .+| ..|+++++|++|++++|.+++    ..+
T Consensus        63 --~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p-~~~~~l~~L~~L~L~~n~l~~----~~~  132 (520)
T 2z7x_B           63 --SVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPIC-KEFGNMSQLKFLGLSTTHLEK----SSV  132 (520)
T ss_dssp             --GGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCC-GGGGGCTTCCEEEEEESSCCG----GGG
T ss_pred             --HHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccch-hhhccCCcceEEEecCcccch----hhc
Confidence              66777777777777777777 45554  67777777777777774 355 567777777777777777764    234


Q ss_pred             hcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcC--CccCchhhhcCC-CCCEEEccCCCCcCCcchHHHhcCCC
Q 041908          250 ANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNI--SGTIPSFLQYQY-DLRYIDLSHNNLAGTFPTWLLQNNTK  326 (883)
Q Consensus       250 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~~l~~  326 (883)
                      ..+++|                     +|++|++++|.+  .+..|..+..+. ....+++++|.+.+.++...+.++++
T Consensus       133 ~~l~~L---------------------~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~  191 (520)
T 2z7x_B          133 LPIAHL---------------------NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN  191 (520)
T ss_dssp             GGGTTS---------------------CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSE
T ss_pred             cccccc---------------------eeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccc
Confidence            444444                     125555555555  455555554443 23345666676666666655556677


Q ss_pred             CcEEEccccc-------ccccccCCCCCCCccEEEccCCccccccchhhhc--CCCCCcEEeCCCCcCCCCCCccc----
Q 041908          327 LEFLFLFNNF-------LKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGM--ILPELVYLDMSQNSFEGSIPPSM----  393 (883)
Q Consensus       327 L~~L~L~~n~-------l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~--~l~~L~~L~L~~n~l~~~~p~~l----  393 (883)
                      |+.|++++|.       +.+..+....+++|++|++++|.+.+..+..+..  ..++|++|++++|+++|.+|..+    
T Consensus       192 L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~  271 (520)
T 2z7x_B          192 LELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS  271 (520)
T ss_dssp             EEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCC
T ss_pred             eeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcc
Confidence            7777776665       3332222335566777777777666543333211  14578888888888887888777    


Q ss_pred             -cccCcccEEeccCCcccCccchhHhhCC---CCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCC
Q 041908          394 -GYTVRLLFLDLSSNNFSGELPKQFLTGC---VSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNA  469 (883)
Q Consensus       394 -~~l~~L~~L~Ls~n~l~~~ip~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  469 (883)
                       +.+++|+.+++++|.+  .+|...+..+   .+|+.|++++|.+.....  ...+++|++|++++|++++.+|..+..+
T Consensus       272 ~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  347 (520)
T 2z7x_B          272 GTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHL  347 (520)
T ss_dssp             SCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCC
T ss_pred             cccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccC
Confidence             7788888888888887  5663222222   456777776666544321  1345555555555555555555555555


Q ss_pred             CCCCEEEccCCccCC--CcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCee
Q 041908          470 PSLHILDVSNNMLSG--QLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHL  547 (883)
Q Consensus       470 ~~L~~L~ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L  547 (883)
                      ++|++|++++|.+++  .+|..++.+++|++|++++|++++.+|..                       .+..+++|++|
T Consensus       348 ~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~-----------------------~~~~l~~L~~L  404 (520)
T 2z7x_B          348 TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG-----------------------DCSWTKSLLSL  404 (520)
T ss_dssp             SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC-----------------------SCCCCTTCCEE
T ss_pred             CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc-----------------------hhccCccCCEE
Confidence            555555555555553  33444555555555555555555433322                       23444555555


Q ss_pred             ecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchh-hcCCCCCCEEEcCCCcC
Q 041908          548 FLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQ-LCHLRKIAIVDISYNLL  626 (883)
Q Consensus       548 ~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~-l~~l~~L~~L~ls~N~l  626 (883)
                      ++++|++++.+|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|++
T Consensus       405 ~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          405 NMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             ECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCC
Confidence            5555555544444332  45666666666666 55655556666666666666666 34443 66667777777777777


Q ss_pred             CCCCC
Q 041908          627 DGSIP  631 (883)
Q Consensus       627 ~~~~p  631 (883)
                      ++..+
T Consensus       481 ~c~c~  485 (520)
T 2z7x_B          481 DCSCP  485 (520)
T ss_dssp             CCCHH
T ss_pred             cccCC
Confidence            66544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.9e-45  Score=437.35  Aligned_cols=439  Identities=18%  Similarity=0.230  Sum_probs=349.5

Q ss_pred             ccceEEEcccCcCCccCchhhhcCCCCCEEEc-cCCCCcCCcchHHHhcCCCCc-----EEEc----------ccccccc
Q 041908          276 FQLKVLNLRRCNISGTIPSFLQYQYDLRYIDL-SHNNLAGTFPTWLLQNNTKLE-----FLFL----------FNNFLKG  339 (883)
Q Consensus       276 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-s~n~l~~~~p~~~~~~l~~L~-----~L~L----------~~n~l~~  339 (883)
                      ..++.|+|+++.+.|.+|+.++.+++|++|+| ++|.++|..|.........+.     .+..          ....+..
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            46889999999999999999999999999999 888887764422100000000     0000          0000000


Q ss_pred             --------cc---cC-CCCCCCccEEEccC--CccccccchhhhcCCCCCcEEeCCCCcCCC-----------------C
Q 041908          340 --------LL---HL-PDSKRDLLHLVISN--NNFIGMLPDNFGMILPELVYLDMSQNSFEG-----------------S  388 (883)
Q Consensus       340 --------~~---~~-~~~~~~L~~L~ls~--n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~-----------------~  388 (883)
                              .+   .+ ......++.+.+..  |.+.+ +|..++. +++|++|+|++|.+++                 .
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~  480 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY  480 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhc-CCCCCEEECcCCcCCCCccccccccccccccccc
Confidence                    00   00 01223344444443  78888 8988876 8999999999999998                 3


Q ss_pred             CCcccc--ccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcc-cCC-cCcccccCCC-------CCCeEEccCcc
Q 041908          389 IPPSMG--YTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNY-FGG-QIFPKYMSMT-------QLAWLYLNDNQ  457 (883)
Q Consensus       389 ~p~~l~--~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~  457 (883)
                      +|..++  .+++|++|++++|.+.+.+|..+ ..+++|+.|++++|+ +++ .+|..+..++       +|++|++++|+
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            888877  99999999999999999999765 689999999999998 888 7887666655       99999999999


Q ss_pred             cCccccc--cccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCc-ccEEecCCCcCcCcc
Q 041908          458 FTGRLEE--GLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQV-ARILDISENKLYGPL  534 (883)
Q Consensus       458 l~~~~~~--~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~  534 (883)
                      ++ .+|.  .+..+++|+.|++++|.++ .+| .++.+++|++|++++|+++ .+|..+..+++ |+.|++++|++. .+
T Consensus       560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l  634 (876)
T 4ecn_A          560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI  634 (876)
T ss_dssp             CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred             CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence            99 7888  8999999999999999998 888 8999999999999999999 88888999999 999999999998 67


Q ss_pred             ccccccCCC--cCeeecccCccccccchh---hh--cCCCCCEEeccCCcCCccCCccc-cCCCCCcEEEccCCcccccC
Q 041908          535 EFSFNHSSS--LWHLFLHNNSLNGSIPSA---LF--QSSQLMTLDLRDNEFSGNIPPLI-NEDSNLRALLLRGNNLQGNI  606 (883)
Q Consensus       535 ~~~~~~~~~--L~~L~L~~n~l~~~~p~~---~~--~~~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~g~~  606 (883)
                      |..+..++.  |+.|++++|++++.+|..   +.  .+++|+.|++++|+++ .+|..+ ..+++|+.|+|++|+++ .+
T Consensus       635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~i  712 (876)
T 4ecn_A          635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SI  712 (876)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CC
T ss_pred             chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-cc
Confidence            777766644  999999999999876632   22  3458999999999999 566654 58899999999999999 77


Q ss_pred             chhhcCC--------CCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccC
Q 041908          607 PQQLCHL--------RKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSG  678 (883)
Q Consensus       607 p~~l~~l--------~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  678 (883)
                      |..+...        ++|+.|+|++|+++ .+|..+..                                          
T Consensus       713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~------------------------------------------  749 (876)
T 4ecn_A          713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA------------------------------------------  749 (876)
T ss_dssp             CTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST------------------------------------------
T ss_pred             ChHHhccccccccccCCccEEECCCCCCc-cchHHhhh------------------------------------------
Confidence            7765443        38999999999998 66654420                                          


Q ss_pred             CChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCC------CcCCcCCCcccc
Q 041908          679 EDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSH------NHLSGSIPRSFS  752 (883)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~------N~l~g~ip~~l~  752 (883)
                                               ..+++|+.|||++|+|++ +|..++.+++|+.|+|++      |++.+.+|..++
T Consensus       750 -------------------------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~  803 (876)
T 4ecn_A          750 -------------------------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT  803 (876)
T ss_dssp             -------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred             -------------------------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence                                     115788999999999997 899999999999999977      889999999999


Q ss_pred             CcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCC
Q 041908          753 NLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTP  796 (883)
Q Consensus       753 ~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip  796 (883)
                      ++++|+.|||++|++ +.+|..+.  ++|+.||+++|++...-+
T Consensus       804 ~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~  844 (876)
T 4ecn_A          804 TCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDV  844 (876)
T ss_dssp             GCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred             cCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence            999999999999999 79999876  599999999999876444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=6.9e-43  Score=416.62  Aligned_cols=495  Identities=20%  Similarity=0.168  Sum_probs=378.0

Q ss_pred             CCCCcCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCcccccccc
Q 041908           81 YNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEK  160 (883)
Q Consensus        81 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~  160 (883)
                      +.++.++++|++|||++|.+.+..+.+|.++++|++|+|++|++++  +|...|.++++|++|+|++|++++..+     
T Consensus        69 ~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~--l~~~~f~~L~~L~~L~Ls~N~l~~l~~-----  141 (635)
T 4g8a_A           69 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--LALGAFSGLSSLQKLVAVETNLASLEN-----  141 (635)
T ss_dssp             TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--ECGGGGTTCTTCCEEECTTSCCCCSTT-----
T ss_pred             HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC--CCHHHhcCCCCCCEEECCCCcCCCCCh-----
Confidence            3468899999999999999999888899999999999999999987  776789999999999999999987654     


Q ss_pred             chhhcccccchhhhhcCCCCCCEEEccCCcCCC-CCCccccCCCCCCEEEccCCccccccChhhhcCCCCC----CEEec
Q 041908          161 LELLNNKCREMNARICELKNLVELNLSWNKLDG-SLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSL----EYLSL  235 (883)
Q Consensus       161 L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L----~~L~L  235 (883)
                                  ..++++++|++|+|++|.+++ .+|..++.+++|++|++++|++++ ++...+..+.++    ..+++
T Consensus       142 ------------~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~l~~~~~~~~l  208 (635)
T 4g8a_A          142 ------------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDL  208 (635)
T ss_dssp             ------------CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTTCCCEEEC
T ss_pred             ------------hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc-cccccccchhhhhhhhhhhhc
Confidence                        568999999999999999976 468889999999999999999994 443666655443    36777


Q ss_pred             cCCcCccccChHhhhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCcc-CchhhhcCCCCCEEEccCCCCcC
Q 041908          236 SGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGT-IPSFLQYQYDLRYIDLSHNNLAG  314 (883)
Q Consensus       236 ~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~  314 (883)
                      +.|.++. ++...                        .....++.+++.+|..... .+..+..+..++...+..+...+
T Consensus       209 s~n~l~~-i~~~~------------------------~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~  263 (635)
T 4g8a_A          209 SLNPMNF-IQPGA------------------------FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN  263 (635)
T ss_dssp             TTCCCCE-ECTTT------------------------TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred             ccCcccc-cCccc------------------------ccchhhhhhhhhcccccccccchhhcCCccccccccccccccc
Confidence            7777663 33222                        2222344555555544322 23345556666655554322111


Q ss_pred             -----CcchHHHhcCCCCcEEEcccccccc----cccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcC
Q 041908          315 -----TFPTWLLQNNTKLEFLFLFNNFLKG----LLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSF  385 (883)
Q Consensus       315 -----~~p~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l  385 (883)
                           ......+.....+....+..+....    .........+++.+.+.++.+....+..   ....++.|++.+|.+
T Consensus       264 ~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~  340 (635)
T 4g8a_A          264 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELVNCKF  340 (635)
T ss_dssp             SCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGG---SCCCCSEEEEESCEE
T ss_pred             ccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccc---cchhhhhhhcccccc
Confidence                 1111112234445555544433221    1122235667788888888776543322   267888999988888


Q ss_pred             CCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCC--cCcccccCCCCCCeEEccCcccCcccc
Q 041908          386 EGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGG--QIFPKYMSMTQLAWLYLNDNQFTGRLE  463 (883)
Q Consensus       386 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~  463 (883)
                      .+..+   ..+..|+.+++..|.+....+   ...+++|+.+++++|.+..  ..+..+..+.+|+.+++..|.... .+
T Consensus       341 ~~~~~---~~l~~L~~l~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~  413 (635)
T 4g8a_A          341 GQFPT---LKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MS  413 (635)
T ss_dssp             SSCCC---CBCTTCCEEEEESCCSCCBCC---CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-EC
T ss_pred             cCcCc---ccchhhhhcccccccCCCCcc---cccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-cc
Confidence            74433   345678888888887763332   2468889999999988754  345556678899999999998874 45


Q ss_pred             ccccCCCCCCEEEccCCccCCCcc-hhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCc-CccccccccC
Q 041908          464 EGLLNAPSLHILDVSNNMLSGQLP-HWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLY-GPLEFSFNHS  541 (883)
Q Consensus       464 ~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~~  541 (883)
                      ..+..+++|+.++++.+......+ ..+..+.+++.++++.|.+.+..+..+..++.|+.|++++|.+. +..|..|..+
T Consensus       414 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l  493 (635)
T 4g8a_A          414 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL  493 (635)
T ss_dssp             SCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred             ccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhc
Confidence            567788999999999888765443 45788999999999999999999999999999999999999754 4577889999


Q ss_pred             CCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCC-CCCCEEE
Q 041908          542 SSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHL-RKIAIVD  620 (883)
Q Consensus       542 ~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l-~~L~~L~  620 (883)
                      ++|++|+|++|++++..|..|.++++|++|+|++|++++..|..+..+++|++|+|++|++++..|..+..+ ++|+.|+
T Consensus       494 ~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~  573 (635)
T 4g8a_A          494 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN  573 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEE
T ss_pred             cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEE
Confidence            999999999999999889999999999999999999999888999999999999999999999999999988 6899999


Q ss_pred             cCCCcCCCCC
Q 041908          621 ISYNLLDGSI  630 (883)
Q Consensus       621 ls~N~l~~~~  630 (883)
                      +++|++....
T Consensus       574 L~~Np~~C~C  583 (635)
T 4g8a_A          574 LTQNDFACTC  583 (635)
T ss_dssp             CTTCCBCCSG
T ss_pred             eeCCCCcccC
Confidence            9999998653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=5.8e-43  Score=409.83  Aligned_cols=456  Identities=21%  Similarity=0.233  Sum_probs=272.1

Q ss_pred             CCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhccccc
Q 041908           90 LKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCR  169 (883)
Q Consensus        90 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~  169 (883)
                      .+++|++++++.+ +|..+.  ++|++|+|++|.+.+  +|...|.++++|++|+|++|.+.+..|              
T Consensus        33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------------   93 (562)
T 3a79_B           33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISE--LRMPDISFLSELRVLRLSHNRIRSLDF--------------   93 (562)
T ss_dssp             CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCC--CCGGGTTTCTTCCEEECCSCCCCEECT--------------
T ss_pred             CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccc--cChhhhccCCCccEEECCCCCCCcCCH--------------
Confidence            4789999988886 565554  788888888888876  554678888888888888888876655              


Q ss_pred             chhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcccc-ccChhhhcCCCCCCEEeccCCcCccccChHh
Q 041908          170 EMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSG-NLPISVFANLTSLEYLSLSGNNFQGSFSLSV  248 (883)
Q Consensus       170 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~  248 (883)
                         ..+.++++|++|+|++|+++ .+|..  .+++|++|++++|++++ .+| ..|+++++|++|++++|++++ .   .
T Consensus        94 ---~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p-~~~~~l~~L~~L~L~~n~l~~-~---~  162 (562)
T 3a79_B           94 ---HVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVC-KEFGNLTKLTFLGLSAAKFRQ-L---D  162 (562)
T ss_dssp             ---TTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCC-GGGGGCTTCCEEEEECSBCCT-T---T
T ss_pred             ---HHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCch-HhhcccCcccEEecCCCcccc-C---c
Confidence               66778888888888888887 56655  78888888888888874 234 578888888888888887764 1   2


Q ss_pred             hhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcC--CccCchhhhcCC--CCCEEEccCCCCcCCcchHHHhcC
Q 041908          249 LANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNI--SGTIPSFLQYQY--DLRYIDLSHNNLAGTFPTWLLQNN  324 (883)
Q Consensus       249 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~p~~~~~~l  324 (883)
                      +..+++|                     +|++|++++|.+  ++..|..+..+.  .+ .+++++|.+.+.++...+..+
T Consensus       163 ~~~l~~L---------------------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l  220 (562)
T 3a79_B          163 LLPVAHL---------------------HLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNAL  220 (562)
T ss_dssp             TGGGTTS---------------------CEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSE
T ss_pred             hhhhhhc---------------------eeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhccccc
Confidence            3333433                     224445555555  444454444433  22 445566666655555544455


Q ss_pred             CCCcEEEcccccc-----cccccCCCCCCCccEEEccCCcccccc----chhhhcCCCCCcEEeCCCCcCCCCCCccc--
Q 041908          325 TKLEFLFLFNNFL-----KGLLHLPDSKRDLLHLVISNNNFIGML----PDNFGMILPELVYLDMSQNSFEGSIPPSM--  393 (883)
Q Consensus       325 ~~L~~L~L~~n~l-----~~~~~~~~~~~~L~~L~ls~n~l~~~~----p~~~~~~l~~L~~L~L~~n~l~~~~p~~l--  393 (883)
                      ++|+.+++++|..     .+.......+++|+.++++++.+.+..    +....  .++|++|++++|.++|.+|..+  
T Consensus       221 ~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~ip~~~~~  298 (562)
T 3a79_B          221 GHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW--PRPVEYLNIYNLTITERIDREEFT  298 (562)
T ss_dssp             EEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT--TSSEEEEEEEEEEECSCCCCCCCC
T ss_pred             ceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh--cccccEEEEeccEeeccccchhhh
Confidence            6666666666531     111111123455555555555544322    22221  3577888888887777777766  


Q ss_pred             ---cccCcccEEeccCCcccCccchhHhhC---CCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCcccccccc
Q 041908          394 ---GYTVRLLFLDLSSNNFSGELPKQFLTG---CVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLL  467 (883)
Q Consensus       394 ---~~l~~L~~L~Ls~n~l~~~ip~~~~~~---l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  467 (883)
                         ..++.|+.++++.+.+  .+|...+..   ..+|++|++++|.+.....  ...+                      
T Consensus       299 ~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l----------------------  352 (562)
T 3a79_B          299 YSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSP----------------------  352 (562)
T ss_dssp             CCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSC----------------------
T ss_pred             cccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC--ccCC----------------------
Confidence               5666666666666665  455332211   1445555555555432211  1234                      


Q ss_pred             CCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCC--CCccccCCCcccEEecCCCcCcCcccc-ccccCCCc
Q 041908          468 NAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGD--VSVPLSNLQVARILDISENKLYGPLEF-SFNHSSSL  544 (883)
Q Consensus       468 ~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~L  544 (883)
                        ++|++|++++|.+++.+|..++++++|++|++++|++++.  +|..+.++++|++|++++|++++.+|. .+..+++|
T Consensus       353 --~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L  430 (562)
T 3a79_B          353 --SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI  430 (562)
T ss_dssp             --CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred             --CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence              4455555555555444444455555555555555555442  123345555555555555555543332 34555566


Q ss_pred             CeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchh-hcCCCCCCEEEcCC
Q 041908          545 WHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQ-LCHLRKIAIVDISY  623 (883)
Q Consensus       545 ~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~-l~~l~~L~~L~ls~  623 (883)
                      ++|++++|++++.+|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++
T Consensus       431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~  506 (562)
T 3a79_B          431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHD  506 (562)
T ss_dssp             CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCS
T ss_pred             CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecC
Confidence            6666666666555444332  46667777777666 46665556677777777777776 45544 66777777777777


Q ss_pred             CcCCCCCC
Q 041908          624 NLLDGSIP  631 (883)
Q Consensus       624 N~l~~~~p  631 (883)
                      |++.+..|
T Consensus       507 N~~~c~c~  514 (562)
T 3a79_B          507 NPWDCTCP  514 (562)
T ss_dssp             CCBCCCHH
T ss_pred             CCcCCCcc
Confidence            77766554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.6e-42  Score=404.26  Aligned_cols=439  Identities=18%  Similarity=0.213  Sum_probs=341.0

Q ss_pred             ccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCCCCccEEEc
Q 041908          276 FQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVI  355 (883)
Q Consensus       276 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l  355 (883)
                      .++++|++++|.+++..|..+..+++|++|++++|++++..|..+ .++++|++|++++|.++.++..  .+++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF-LFNQDLEYLDVSHNRLQNISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTT-TTCTTCCEEECTTSCCCEECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHh-CCCCCCCEEECCCCcCCccCcc--ccccCCEEEC
Confidence            467777777777777777788888888888888888875445444 4788888888888888766544  6788888888


Q ss_pred             cCCcccc-ccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcc--cEEeccCCcc--cCccchhHhhCCC-CCCEEEc
Q 041908          356 SNNNFIG-MLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRL--LFLDLSSNNF--SGELPKQFLTGCV-SLAFMNV  429 (883)
Q Consensus       356 s~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~Ls~n~l--~~~ip~~~~~~l~-~L~~L~L  429 (883)
                      ++|.+.+ .+|..+.. +++|++|++++|.+++.   .+..+++|  ++|++++|.+  ++..|..+ ..+. ..-.+++
T Consensus       129 s~N~l~~l~~p~~~~~-l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l-~~l~~~~l~l~l  203 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGN-LTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESL-QIPNTTVLHLVF  203 (562)
T ss_dssp             CSSCCSBCCCCGGGGG-CTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEE-EECCEEEEEEEE
T ss_pred             CCCCccccCchHhhcc-cCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccc-cccCcceEEEEe
Confidence            8888876 44667765 88899999998888753   34555555  8899998888  66666543 2222 1225677


Q ss_pred             cCcccCCcCcc-cccCCCCCCeEEccCcc-----cCccccccccCCCCCCEEEccCCccCCC----cchhhhCCCCCCEE
Q 041908          430 SHNYFGGQIFP-KYMSMTQLAWLYLNDNQ-----FTGRLEEGLLNAPSLHILDVSNNMLSGQ----LPHWVGNFSNLDVL  499 (883)
Q Consensus       430 s~n~l~~~~~~-~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L  499 (883)
                      +.|.+.+.++. .+..+++|+.+++++|+     +.+. ...+..++.|+.|+++++.+.+.    ++..+ ..++|++|
T Consensus       204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L  281 (562)
T 3a79_B          204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYL  281 (562)
T ss_dssp             CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEE
T ss_pred             cCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEE
Confidence            88887775543 45678889999999885     2222 23567788899999988877653    22222 24589999


Q ss_pred             ECCCCcCCCCCCccc-----cCCCcccEEecCCCcCcCccc-cccc---cCCCcCeeecccCccccccchhhhcCCCCCE
Q 041908          500 LMSRNSLEGDVSVPL-----SNLQVARILDISENKLYGPLE-FSFN---HSSSLWHLFLHNNSLNGSIPSALFQSSQLMT  570 (883)
Q Consensus       500 ~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~~-~~~~---~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~  570 (883)
                      ++++|.++|.+|..+     .+++.|+.++++.+.+  .+| ..+.   ...+|++|++++|.+....  ....+++|++
T Consensus       282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~  357 (562)
T 3a79_B          282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTF  357 (562)
T ss_dssp             EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCE
T ss_pred             EEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceE
Confidence            999999999899887     7788888888888877  334 2221   1257999999999986432  1267899999


Q ss_pred             EeccCCcCCccCCccccCCCCCcEEEccCCcccc--cCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCC
Q 041908          571 LDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQG--NIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFN  648 (883)
Q Consensus       571 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g--~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~  648 (883)
                      |++++|++++.+|..++.+++|++|++++|++++  .+|..+..+++|+.|++++|++++.+|....             
T Consensus       358 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-------------  424 (562)
T 3a79_B          358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC-------------  424 (562)
T ss_dssp             EECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC-------------
T ss_pred             EECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh-------------
Confidence            9999999999999999999999999999999997  4467799999999999999999886765321             


Q ss_pred             CcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCccccc
Q 041908          649 GFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIG  728 (883)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~  728 (883)
                                                                             ..+++|+.|+|++|++++.+|..+.
T Consensus       425 -------------------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~l~  449 (562)
T 3a79_B          425 -------------------------------------------------------AWAESILVLNLSSNMLTGSVFRCLP  449 (562)
T ss_dssp             -------------------------------------------------------CCCTTCCEEECCSSCCCGGGGSSCC
T ss_pred             -------------------------------------------------------cCcccCCEEECCCCCCCcchhhhhc
Confidence                                                                   1156789999999999999888765


Q ss_pred             ccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCcc-ccCCCCCcEEEccCCcCcccCCCCcc
Q 041908          729 YLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLE-LSELNYLAIFNVSYNDLSGPTPNTKQ  800 (883)
Q Consensus       729 ~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~-l~~l~~L~~l~ls~N~l~g~ip~~~~  800 (883)
                        ++|++|+|++|+++ .+|..+..+++|++|||++|+++ .+|.. +..+++|+.|++++|+++|.+|..+.
T Consensus       450 --~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~  518 (562)
T 3a79_B          450 --PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY  518 (562)
T ss_dssp             --TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred             --CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcchHHH
Confidence              78999999999999 78888889999999999999999 46665 99999999999999999999886544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2e-41  Score=386.63  Aligned_cols=376  Identities=19%  Similarity=0.225  Sum_probs=314.9

Q ss_pred             EEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccC
Q 041908          352 HLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSH  431 (883)
Q Consensus       352 ~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~  431 (883)
                      .++.+++.+. .+|. +   .++|++|++++|.+++..|..+..+++|++|++++|.+.+.++...+.++++|++|++++
T Consensus        14 ~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           14 NAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             EEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            3444444443 4454 2   467888888888888777888888888888888888887777777678888888888888


Q ss_pred             cccCCcCcccccCCCCCCeEEccCcccCcccccc--ccCCCCCCEEEccCCccCCCcchh-hhCCCCCCEEECCCCcCCC
Q 041908          432 NYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEG--LLNAPSLHILDVSNNMLSGQLPHW-VGNFSNLDVLLMSRNSLEG  508 (883)
Q Consensus       432 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~  508 (883)
                      |.+++..|..+..+++|++|++++|++++..+..  +..+++|++|++++|.+++..|.. +.++++|++|++++|++++
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            8888888888888999999999999988765554  888899999999999998877766 7889999999999999998


Q ss_pred             CCCccccCC--CcccEEecCCCcCcCcccccc--------ccCCCcCeeecccCccccccchhhhcC---CCCCEEeccC
Q 041908          509 DVSVPLSNL--QVARILDISENKLYGPLEFSF--------NHSSSLWHLFLHNNSLNGSIPSALFQS---SQLMTLDLRD  575 (883)
Q Consensus       509 ~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~--------~~~~~L~~L~L~~n~l~~~~p~~~~~~---~~L~~L~Ls~  575 (883)
                      ..+..+..+  .+|+.|++++|.+.+..+..+        ..+++|++|++++|++++..|..+...   ++|+.|++++
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~  248 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN  248 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred             cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence            888888776  688999999999887655433        355789999999999998888887765   8899999999


Q ss_pred             CcCCccC----------CccccC--CCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccC
Q 041908          576 NEFSGNI----------PPLINE--DSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEE  643 (883)
Q Consensus       576 N~l~~~~----------p~~l~~--l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~  643 (883)
                      |.+.+..          +..+..  .++|++|++++|++++.+|..+..+++|+.|++++|++++..|..+..       
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-------  321 (455)
T 3v47_A          249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG-------  321 (455)
T ss_dssp             CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-------
T ss_pred             ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-------
Confidence            8665432          222222  368999999999999999999999999999999999998776665532       


Q ss_pred             CCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccC
Q 041908          644 GDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEI  723 (883)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~i  723 (883)
                                                                                    +++|+.|||++|++++..
T Consensus       322 --------------------------------------------------------------l~~L~~L~Ls~N~l~~~~  339 (455)
T 3v47_A          322 --------------------------------------------------------------LTHLLKLNLSQNFLGSID  339 (455)
T ss_dssp             --------------------------------------------------------------CTTCCEEECCSSCCCEEC
T ss_pred             --------------------------------------------------------------cccCCEEECCCCccCCcC
Confidence                                                                          467899999999999888


Q ss_pred             cccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCCCccC
Q 041908          724 PSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQF  801 (883)
Q Consensus       724 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~  801 (883)
                      |..++.+++|++|+|++|++++.+|..|+.+++|++|||++|++++..+..+..+++|+.|++++|+++|.+|....+
T Consensus       340 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l  417 (455)
T 3v47_A          340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  417 (455)
T ss_dssp             GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence            999999999999999999999999999999999999999999999877778899999999999999999999976544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=7.4e-41  Score=378.63  Aligned_cols=423  Identities=22%  Similarity=0.286  Sum_probs=220.1

Q ss_pred             CCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcCCCCc
Q 041908          177 ELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLE  256 (883)
Q Consensus       177 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~  256 (883)
                      +.++|++|++++|.+ |.+|++++++++|++|++++|.++|.+| ..++++++|+.+++..|..            .+  
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~l~l~~c~~------------~~--   72 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAP-PGNGEQREMAVSRLRDCLD------------RQ--   72 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSC-TTSCCCHHHHHHHHHHHHH------------HT--
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCC-cccccchhcchhhhhhhhc------------cC--
Confidence            357888888888888 6888888888888888888888888888 6777777776665554421            12  


Q ss_pred             EEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEccccc
Q 041908          257 VLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNF  336 (883)
Q Consensus       257 ~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~  336 (883)
                                           +++|++++|.+++ +|.   ..++|++|++++|.+++ +|.    ..++|++|++++|.
T Consensus        73 ---------------------l~~L~l~~~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~  122 (454)
T 1jl5_A           73 ---------------------AHELELNNLGLSS-LPE---LPPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNN  122 (454)
T ss_dssp             ---------------------CSEEECTTSCCSC-CCS---CCTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSC
T ss_pred             ---------------------CCEEEecCCcccc-CCC---CcCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCc
Confidence                                 3344444444443 122   12466666666666664 553    23455555555555


Q ss_pred             ccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchh
Q 041908          337 LKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQ  416 (883)
Q Consensus       337 l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~  416 (883)
                      +++++..                            .++|++|++++|++++ +| .++.+++|++|++++|+++ .+|..
T Consensus       123 l~~l~~~----------------------------~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~  171 (454)
T 1jl5_A          123 LKALSDL----------------------------PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL  171 (454)
T ss_dssp             CSCCCSC----------------------------CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC
T ss_pred             cCcccCC----------------------------CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC
Confidence            5443211                            1345555555555553 44 3555555555555555555 24432


Q ss_pred             HhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCC
Q 041908          417 FLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNL  496 (883)
Q Consensus       417 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L  496 (883)
                          ..+|++|++++|++++ +| .+..+++|++|++++|++++ +|..   .++|++|++++|.+. .+|. ++.+++|
T Consensus       172 ----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L  239 (454)
T 1jl5_A          172 ----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFL  239 (454)
T ss_dssp             ----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTC
T ss_pred             ----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCC
Confidence                2356666666666655 23 45666666777777766664 3322   246777777777776 5563 6777777


Q ss_pred             CEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCC
Q 041908          497 DVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDN  576 (883)
Q Consensus       497 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N  576 (883)
                      ++|++++|++++ +|..   +++|+.|++++|++.+ +|..   +++|++|++++|++++ +|..   .++|+.|++++|
T Consensus       240 ~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N  307 (454)
T 1jl5_A          240 TTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSN  307 (454)
T ss_dssp             CEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSS
T ss_pred             CEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCC
Confidence            777777777775 3332   3677778888887766 3332   3678888888888875 2211   257888888888


Q ss_pred             cCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCccccccc
Q 041908          577 EFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTL  656 (883)
Q Consensus       577 ~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  656 (883)
                      ++++ ++..   .++|++|++++|++++ +|..   +++|+.|++++|++++ +|. .                      
T Consensus       308 ~l~~-i~~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~-~----------------------  355 (454)
T 1jl5_A          308 EIRS-LCDL---PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE-L----------------------  355 (454)
T ss_dssp             CCSE-ECCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC-C----------------------
T ss_pred             cCCc-ccCC---cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc-h----------------------
Confidence            8885 2221   2578899999998886 6654   5788999999998873 443 0                      


Q ss_pred             ccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcc--cCcccccccccCC
Q 041908          657 VVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTG--EIPSAIGYLQELH  734 (883)
Q Consensus       657 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g--~ip~~l~~l~~L~  734 (883)
                                                                       +++|+.||+++|++++  .+|.+++.+    
T Consensus       356 -------------------------------------------------l~~L~~L~L~~N~l~~l~~ip~~l~~L----  382 (454)
T 1jl5_A          356 -------------------------------------------------PQNLKQLHVEYNPLREFPDIPESVEDL----  382 (454)
T ss_dssp             -------------------------------------------------CTTCCEEECCSSCCSSCCCCCTTCCEE----
T ss_pred             -------------------------------------------------hhhccEEECCCCCCCcCCCChHHHHhh----
Confidence                                                             3567889999999998  788776543    


Q ss_pred             eeeCCCCcCCcCCCccccCcCCCCEEECCCCcccc--cCCccccCCCCCcEEEccCCcCcccCCCC
Q 041908          735 ALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRG--QIPLELSELNYLAIFNVSYNDLSGPTPNT  798 (883)
Q Consensus       735 ~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg--~ip~~l~~l~~L~~l~ls~N~l~g~ip~~  798 (883)
                          +.|.+.|.+|..   +++|+.||+++|+++|  .+|.+      ++.|.+++|.+.+++|..
T Consensus       383 ----~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~~  435 (454)
T 1jl5_A          383 ----RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEFA  435 (454)
T ss_dssp             ----ECCC----------------------------------------------------------
T ss_pred             ----hhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCccccC
Confidence                457888888874   5789999999999998  77765      455678899999887754

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3e-40  Score=373.70  Aligned_cols=288  Identities=25%  Similarity=0.253  Sum_probs=129.5

Q ss_pred             CccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCC-------------cEEEcccccccccc
Q 041908          275 RFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKL-------------EFLFLFNNFLKGLL  341 (883)
Q Consensus       275 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L-------------~~L~L~~n~l~~~~  341 (883)
                      ...|++|++++|.+ +.+|..++++++|++|++++|.+.|.+|..+. ++++|             ++|++++|.+++++
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp   87 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRDCLDRQAHELELNNLGLSSLP   87 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSC-CCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccc-cchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence            34678888888888 78888899999999999999998888888664 55555             55555555555543


Q ss_pred             cCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCC
Q 041908          342 HLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGC  421 (883)
Q Consensus       342 ~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l  421 (883)
                      ..   .++|++|++++|.+.+ +|..    +++|++|++++|++++ +|..   .++|++|++++|++++ +|.  +..+
T Consensus        88 ~~---~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp~--~~~l  152 (454)
T 1jl5_A           88 EL---PPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LPE--LQNS  152 (454)
T ss_dssp             SC---CTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CCC--CTTC
T ss_pred             CC---cCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Ccc--cCCC
Confidence            32   2455555555555554 3321    3455555555555542 2211   1355555555555552 442  3445


Q ss_pred             CCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEEC
Q 041908          422 VSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLM  501 (883)
Q Consensus       422 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L  501 (883)
                      ++|++|++++|++++ +|..   .++|++|++++|++++ +| .+..+++|++|++++|.+++ +|..   .++|++|++
T Consensus       153 ~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l  222 (454)
T 1jl5_A          153 SFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVA  222 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred             CCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence            555555555555543 2221   2345555555555544 23 34455555555555555543 2221   134555555


Q ss_pred             CCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCcc
Q 041908          502 SRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGN  581 (883)
Q Consensus       502 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~  581 (883)
                      ++|.++ .+| .+..+++|++|++++|++++ +|.   .+++|++|++++|++++ +|..   .++|+.|++++|++++.
T Consensus       223 ~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l  292 (454)
T 1jl5_A          223 GNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL  292 (454)
T ss_dssp             CSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE
T ss_pred             cCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc
Confidence            555554 333 24455555555555555443 121   12344555555555443 3322   24455555555554431


Q ss_pred             CCccccCCCCCcEEEccCCccc
Q 041908          582 IPPLINEDSNLRALLLRGNNLQ  603 (883)
Q Consensus       582 ~p~~l~~l~~L~~L~L~~N~l~  603 (883)
                       |..   .++|++|++++|+++
T Consensus       293 -~~~---~~~L~~L~l~~N~l~  310 (454)
T 1jl5_A          293 -SEL---PPNLYYLNASSNEIR  310 (454)
T ss_dssp             -SCC---CTTCCEEECCSSCCS
T ss_pred             -cCc---CCcCCEEECcCCcCC
Confidence             110   134445555555444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.6e-39  Score=369.15  Aligned_cols=354  Identities=21%  Similarity=0.237  Sum_probs=237.0

Q ss_pred             CccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCC-CccccccCcccEEeccCCcccCccchhHhhCCCCCCEE
Q 041908          349 DLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSI-PPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFM  427 (883)
Q Consensus       349 ~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L  427 (883)
                      +|++|++++|.+.+..|..+.. +++|++|++++|.+.+.+ +..|..+++|++|++++|++++..|.. +.++++|++|
T Consensus        31 ~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L  108 (455)
T 3v47_A           31 HVNYVDLSLNSIAELNETSFSR-LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA-FNGLANLEVL  108 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTSS-CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT-TTTCTTCCEE
T ss_pred             ccCEEEecCCccCcCChhHhcc-CccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhh-ccCcccCCEE
Confidence            3444444444444444444432 455555555555544333 234455555555555555554332332 2445555555


Q ss_pred             EccCcccCCcCccc--ccCCCCCCeEEccCcccCcccccc-ccCCCCCCEEEccCCccCCCcchhhhCC--CCCCEEECC
Q 041908          428 NVSHNYFGGQIFPK--YMSMTQLAWLYLNDNQFTGRLEEG-LLNAPSLHILDVSNNMLSGQLPHWVGNF--SNLDVLLMS  502 (883)
Q Consensus       428 ~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~ls~n~l~~~~p~~~~~l--~~L~~L~L~  502 (883)
                      ++++|.+++..+..  +..+++|++|++++|++++..|.. +..+++|++|++++|.+++..|..+..+  .+|+.|+++
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~  188 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS  188 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred             eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence            55555555433332  555555666666666655554543 4555666666666666665555555544  456666666


Q ss_pred             CCcCCCCCCcc--------ccCCCcccEEecCCCcCcCccccccccC---CCcCeeecccCccccc----------cchh
Q 041908          503 RNSLEGDVSVP--------LSNLQVARILDISENKLYGPLEFSFNHS---SSLWHLFLHNNSLNGS----------IPSA  561 (883)
Q Consensus       503 ~n~l~~~~~~~--------l~~l~~L~~L~Ls~n~l~~~~~~~~~~~---~~L~~L~L~~n~l~~~----------~p~~  561 (883)
                      +|.+.+..+..        +..+++|+.|++++|++.+..|..+...   ++|+.|++++|...+.          .+..
T Consensus       189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  268 (455)
T 3v47_A          189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT  268 (455)
T ss_dssp             TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred             cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence            66665443332        2244566666666666666555544332   5666666666644322          1222


Q ss_pred             hh--cCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccc
Q 041908          562 LF--QSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWP  639 (883)
Q Consensus       562 ~~--~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~  639 (883)
                      +.  ..++|+.|++++|++++..|..++.+++|++|++++|++++..|..+..+++|+.|++++|.+++..|..+..   
T Consensus       269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---  345 (455)
T 3v47_A          269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN---  345 (455)
T ss_dssp             TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT---
T ss_pred             cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC---
Confidence            22  2368999999999999999999999999999999999999988999999999999999999997665554432   


Q ss_pred             cccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcC
Q 041908          640 WMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNEL  719 (883)
Q Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  719 (883)
                                                                                        +++|+.|||++|++
T Consensus       346 ------------------------------------------------------------------l~~L~~L~Ls~N~l  359 (455)
T 3v47_A          346 ------------------------------------------------------------------LDKLEVLDLSYNHI  359 (455)
T ss_dssp             ------------------------------------------------------------------CTTCCEEECCSSCC
T ss_pred             ------------------------------------------------------------------cccCCEEECCCCcc
Confidence                                                                              56789999999999


Q ss_pred             cccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCc
Q 041908          720 TGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPL  773 (883)
Q Consensus       720 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~  773 (883)
                      ++.+|..|+.+++|++|+|++|++++..+..++.+++|+.|+|++|++++.+|.
T Consensus       360 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          360 RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            999999999999999999999999988888889999999999999999998873

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=9.2e-38  Score=358.36  Aligned_cols=347  Identities=18%  Similarity=0.133  Sum_probs=276.3

Q ss_pred             cEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccC
Q 041908          400 LFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSN  479 (883)
Q Consensus       400 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~  479 (883)
                      +.++.+++.++ .+|..+   .++++.|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            34555555555 555433   24666777777777666666777778888888888888877777888888888888888


Q ss_pred             CccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccc
Q 041908          480 NMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIP  559 (883)
Q Consensus       480 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p  559 (883)
                      |.+++..+..|.++++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|++++..+
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            88876655667888888888888888888778888888888888888888888878888888888999999888887666


Q ss_pred             hhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccc
Q 041908          560 SALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWP  639 (883)
Q Consensus       560 ~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~  639 (883)
                      ..+.++++|+.|++++|++.+..+..+..+++|++|++++|++.+.+|.......+|+.|++++|++++..+..+.    
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----  245 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR----  245 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHT----
T ss_pred             hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhc----
Confidence            7788889999999999999888778888889999999999888888888777777899999999988742222221    


Q ss_pred             cccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcC
Q 041908          640 WMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNEL  719 (883)
Q Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  719 (883)
                                                                                       .+++|+.|||++|++
T Consensus       246 -----------------------------------------------------------------~l~~L~~L~Ls~n~l  260 (477)
T 2id5_A          246 -----------------------------------------------------------------HLVYLRFLNLSYNPI  260 (477)
T ss_dssp             -----------------------------------------------------------------TCTTCCEEECCSSCC
T ss_pred             -----------------------------------------------------------------CccccCeeECCCCcC
Confidence                                                                             156788899999999


Q ss_pred             cccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCCCc
Q 041908          720 TGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTK  799 (883)
Q Consensus       720 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~  799 (883)
                      ++..+..|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+.|++++|++.|.++..+
T Consensus       261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~  340 (477)
T 2id5_A          261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLW  340 (477)
T ss_dssp             CEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHH
T ss_pred             CccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHh
Confidence            98888888999999999999999998889999999999999999999998777788888999999999999998877655


Q ss_pred             cCCCCCCcccCCCcCCCCCC
Q 041908          800 QFANFDESNYRGNLNLCGPA  819 (883)
Q Consensus       800 ~~~~~~~~~~~gn~~lc~~~  819 (883)
                      .+.+.....+.|+...|..|
T Consensus       341 ~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          341 VFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             HHTTTTSSCCTTCCCBEEES
T ss_pred             HHhhhhccccCccCceeCCc
Confidence            44444445667777778544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.5e-38  Score=342.62  Aligned_cols=295  Identities=26%  Similarity=0.462  Sum_probs=207.9

Q ss_pred             CCcHHHHHHHHHhhhcCCcCCcccccCCccCCCCCCCCCCCCc--cceeecCCCCCCCCCCcCCCCCCEEECCCCCCCC-
Q 041908           26 SCLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCS--WERIKCNVTTANYNNNGSLKQLKILNIGFNSFSE-  102 (883)
Q Consensus        26 ~c~~~~~~all~~k~~~~~~~~~~~~~~~l~sW~~~~~~~cc~--w~gv~C~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-  102 (883)
                      .|.++|++||++||+++.++      . .+++|. . +++||.  |.||+|+..+.       ..++++|+|++|.+.+ 
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~------~-~l~~W~-~-~~~~C~~~w~gv~C~~~~~-------~~~l~~L~L~~~~l~~~   65 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNP------T-TLSSWL-P-TTDCCNRTWLGVLCDTDTQ-------TYRVNNLDLSGLNLPKP   65 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCC------G-GGTTCC-T-TSCTTTTCSTTEEECCSSS-------CCCEEEEEEECCCCSSC
T ss_pred             CCCHHHHHHHHHHHHhcCCc------c-cccCCC-C-CCCCCcCCCcceEeCCCCC-------CceEEEEECCCCCccCC
Confidence            59999999999999999532      2 689993 3 478998  99999986431       1379999999999998 


Q ss_pred             -CCchhhcCCCCCCEEeCCC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccchhhhhcCCCC
Q 041908          103 -SLVPLLTSLTSLTSLFLEG-NNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKN  180 (883)
Q Consensus       103 -~~~~~l~~l~~L~~L~Ls~-n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~  180 (883)
                       .+|+.++++++|++|+|++ |.+.+. +| ..++++++|++|++++|.+.+.+|                 ..+.++++
T Consensus        66 ~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p-~~l~~l~~L~~L~Ls~n~l~~~~p-----------------~~~~~l~~  126 (313)
T 1ogq_A           66 YPIPSSLANLPYLNFLYIGGINNLVGP-IP-PAIAKLTQLHYLYITHTNVSGAIP-----------------DFLSQIKT  126 (313)
T ss_dssp             EECCGGGGGCTTCSEEEEEEETTEESC-CC-GGGGGCTTCSEEEEEEECCEEECC-----------------GGGGGCTT
T ss_pred             cccChhHhCCCCCCeeeCCCCCccccc-CC-hhHhcCCCCCEEECcCCeeCCcCC-----------------HHHhCCCC
Confidence             8899999999999999995 888776 77 578888999999998888887777                 77888888


Q ss_pred             CCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCC-CCCEEeccCCcCccccChHhhhcCCCCcEEE
Q 041908          181 LVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLT-SLEYLSLSGNNFQGSFSLSVLANHSRLEVLQ  259 (883)
Q Consensus       181 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~-~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~  259 (883)
                      |++|+|++|.+++.+|..++++++|++|++++|++++.+| ..++.++ +|++|++++|++++.+|. .+..++      
T Consensus       127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~~L~~L~L~~N~l~~~~~~-~~~~l~------  198 (313)
T 1ogq_A          127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMTISRNRLTGKIPP-TFANLN------  198 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC-GGGGCCCTTCCEEECCSSEEEEECCG-GGGGCC------
T ss_pred             CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC-HHHhhhhhcCcEEECcCCeeeccCCh-HHhCCc------
Confidence            8888888888888888888888888888888888888888 6777777 888888888887765552 233322      


Q ss_pred             ccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcccccccc
Q 041908          260 ISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKG  339 (883)
Q Consensus       260 L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~  339 (883)
                                        |++|++++|.+.+.+|..+..+++|++|++++|.+++.+|.                     
T Consensus       199 ------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---------------------  239 (313)
T 1ogq_A          199 ------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK---------------------  239 (313)
T ss_dssp             ------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG---------------------
T ss_pred             ------------------ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc---------------------
Confidence                              23333344444444555555555555555555555543332                     


Q ss_pred             cccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCc
Q 041908          340 LLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNN  408 (883)
Q Consensus       340 ~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  408 (883)
                          ...+++|++|++++|.+.+.+|..+.. +++|++|++++|++++.+|.. +.+++|+.+++++|.
T Consensus       240 ----~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          240 ----VGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             ----CCCCTTCCEEECCSSCCEECCCGGGGG-CTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             ----ccccCCCCEEECcCCcccCcCChHHhc-CcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence                112344444555555555555555543 555666666666555555543 555555555555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=6.9e-38  Score=354.61  Aligned_cols=368  Identities=19%  Similarity=0.147  Sum_probs=214.0

Q ss_pred             ccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCCCCccEEEccCCccccc
Q 041908          284 RRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGM  363 (883)
Q Consensus       284 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~  363 (883)
                      ..+...+..+..++.+++|++|++++|.+++ +| . +..+++|++|++++|.+++++  ...+++|++|++++|.+.+.
T Consensus        26 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~  100 (457)
T 3bz5_A           26 AAFEMQATDTISEEQLATLTSLDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL  100 (457)
T ss_dssp             HHTTCCTTSEEEHHHHTTCCEEECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC
T ss_pred             HhcCcCcccccChhHcCCCCEEEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee
Confidence            3344455556677788888888888888884 45 3 347777888877777776652  33445555555555555442


Q ss_pred             cchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCccccc
Q 041908          364 LPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYM  443 (883)
Q Consensus       364 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  443 (883)
                       |  +. .+++|++|++++|++++ +|  ++.+++|++|++++|++++ ++                           +.
T Consensus       101 -~--~~-~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~---------------------------l~  145 (457)
T 3bz5_A          101 -D--VT-PLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID---------------------------VS  145 (457)
T ss_dssp             -C--CT-TCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC---------------------------CT
T ss_pred             -e--cC-CCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec---------------------------cc
Confidence             2  22 24555555555555543 22  4455555555555555542 22                           33


Q ss_pred             CCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEE
Q 041908          444 SMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARIL  523 (883)
Q Consensus       444 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  523 (883)
                      .+++|++|++++|+..+.+  .+..+++|++|++++|.+++ +|  +..+++|++|++++|++++.   .+..+++|+.|
T Consensus       146 ~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L  217 (457)
T 3bz5_A          146 HNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFL  217 (457)
T ss_dssp             TCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEE
T ss_pred             cCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEE
Confidence            4444444444444333333  23444555555555555553 23  44555555555555555543   24555555555


Q ss_pred             ecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCccc
Q 041908          524 DISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQ  603 (883)
Q Consensus       524 ~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  603 (883)
                      ++++|++++ +|  +..+++|+.|++++|++++..   +..+++|+.|++++|              +|+.|++++|++.
T Consensus       218 ~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~  277 (457)
T 3bz5_A          218 DCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQL  277 (457)
T ss_dssp             ECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTC
T ss_pred             ECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccC
Confidence            555555555 23  445555555555555555432   234455555555544              2344555555555


Q ss_pred             ccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhh
Q 041908          604 GNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRE  683 (883)
Q Consensus       604 g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  683 (883)
                      |.+|  +..+++|+.|++++|+..+.+|.....+.                                             
T Consensus       278 ~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~---------------------------------------------  310 (457)
T 3bz5_A          278 IYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGIT---------------------------------------------  310 (457)
T ss_dssp             CEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCS---------------------------------------------
T ss_pred             Cccc--ccccccCCEEECCCCcccceeccCCCcce---------------------------------------------
Confidence            5555  34556666666666665555543221110                                             


Q ss_pred             hcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECC
Q 041908          684 LRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLS  763 (883)
Q Consensus       684 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs  763 (883)
                                      .+.....++|+.|+|++|+|+| +|  ++.+++|+.|++++|++++        ++.|+.|+++
T Consensus       311 ----------------~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~  363 (457)
T 3bz5_A          311 ----------------ELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPAL  363 (457)
T ss_dssp             ----------------CCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGG
T ss_pred             ----------------EechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------cccccccccc
Confidence                            0000113567889999999997 43  8899999999999999986        2456677899


Q ss_pred             CCcccccCCccccCCCCCcEEEccCCcCcccCCCC
Q 041908          764 YNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNT  798 (883)
Q Consensus       764 ~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~  798 (883)
                      +|+++|.     .++..|..+++++|+++|.||..
T Consensus       364 ~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          364 NNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             GTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             CCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence            9999987     24456778899999999999965

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5.3e-37  Score=347.35  Aligned_cols=320  Identities=20%  Similarity=0.213  Sum_probs=163.8

Q ss_pred             CCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcCCCCcEEEccCcccccCCCCCC
Q 041908          194 SLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWL  273 (883)
Q Consensus       194 ~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~  273 (883)
                      ..+..++++++|++|++++|.++ .+|  .++.+++|++|++++|++++ ++   ++.+++|++|               
T Consensus        33 ~~~~~~~~l~~L~~L~Ls~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L---------------   90 (457)
T 3bz5_A           33 TDTISEEQLATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYL---------------   90 (457)
T ss_dssp             TSEEEHHHHTTCCEEECCSSCCC-CCT--TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEE---------------
T ss_pred             ccccChhHcCCCCEEEccCCCcc-cCh--hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEE---------------
Confidence            34445556666666666666666 344  35666666666666666553 22   3333333333               


Q ss_pred             CCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCCCCccEE
Q 041908          274 PRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHL  353 (883)
Q Consensus       274 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L  353 (883)
                              ++++|.+++. +  ++.+++|++|++++|++++ +|   +..+++|++|++++|.+++++  ...       
T Consensus        91 --------~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l~--l~~-------  146 (457)
T 3bz5_A           91 --------ACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEID--VSH-------  146 (457)
T ss_dssp             --------ECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCCC--CTT-------
T ss_pred             --------ECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCccceec--ccc-------
Confidence                    2333333322 1  4566777788888887774 44   235666666666666555431  112       


Q ss_pred             EccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcc
Q 041908          354 VISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNY  433 (883)
Q Consensus       354 ~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~  433 (883)
                                        +++|++|++++|+..+.+  .++.+++|++|++++|++++ +|   +..+++|+.|++++|.
T Consensus       147 ------------------l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~  202 (457)
T 3bz5_A          147 ------------------NTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNN  202 (457)
T ss_dssp             ------------------CTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSC
T ss_pred             ------------------CCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCc
Confidence                              445555555555433333  24455555555555555552 33   2344555555555555


Q ss_pred             cCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCcc
Q 041908          434 FGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVP  513 (883)
Q Consensus       434 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~  513 (883)
                      +++.   .+..+++|++|++++|++++ +|  +..+++|++|++++|.+++..   ++.+++|+.|++++|         
T Consensus       203 l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n---------  264 (457)
T 3bz5_A          203 ITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT---------  264 (457)
T ss_dssp             CSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC---------
T ss_pred             CCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC---------
Confidence            5443   24445555555555555554 23  445555555555555555432   234455555555443         


Q ss_pred             ccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCc
Q 041908          514 LSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLR  593 (883)
Q Consensus       514 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  593 (883)
                           +|+.|++++|.+.+.+|  +..+++|+.|++++|...+.+|.   ..++|+.|++++|             ++|+
T Consensus       265 -----~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~  321 (457)
T 3bz5_A          265 -----DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLV  321 (457)
T ss_dssp             -----CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCC
T ss_pred             -----CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCC
Confidence                 23345555555555544  23455555555555555555543   2233444443333             3555


Q ss_pred             EEEccCCcccccCchhhcCCCCCCEEEcCCCcCC
Q 041908          594 ALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLD  627 (883)
Q Consensus       594 ~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~  627 (883)
                      +|++++|++++ ++  ++.+++|+.||+++|+++
T Consensus       322 ~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~  352 (457)
T 3bz5_A          322 YLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQ  352 (457)
T ss_dssp             EEECTTCCCSC-CC--CTTCTTCSEEECCSSCCC
T ss_pred             EEECCCCcccc-cc--cccCCcCcEEECCCCCCC
Confidence            55555555554 22  555555555555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.2e-35  Score=337.01  Aligned_cols=280  Identities=23%  Similarity=0.286  Sum_probs=160.9

Q ss_pred             CCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEE
Q 041908          420 GCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVL  499 (883)
Q Consensus       420 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L  499 (883)
                      .+++|++|++++|.+++..+  +..+++|++|++++|.+.+. + .+..+++|++|+++ |.+.+..+  +.++++|++|
T Consensus       110 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L  182 (466)
T 1o6v_A          110 NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERL  182 (466)
T ss_dssp             TCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEE
T ss_pred             CCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCchh--hccCCCCCEE
Confidence            34444444444444433221  34444455555555544432 1 24445555555554 23332211  5555555555


Q ss_pred             ECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCC
Q 041908          500 LMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFS  579 (883)
Q Consensus       500 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~  579 (883)
                      ++++|.+++.  ..+..+++|++|++++|.+.+..+  +..+++|++|++++|++++.  +.+..+++|+.|++++|+++
T Consensus       183 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~  256 (466)
T 1o6v_A          183 DISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS  256 (466)
T ss_dssp             ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             ECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccc
Confidence            5555555432  224555556666666665555444  44555666666666666532  34556666666666666666


Q ss_pred             ccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccc
Q 041908          580 GNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVE  659 (883)
Q Consensus       580 ~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  659 (883)
                      +..|  +..+++|++|++++|++++..+  +..+++|+.|++++|++++..|  +                         
T Consensus       257 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~-------------------------  305 (466)
T 1o6v_A          257 NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--I-------------------------  305 (466)
T ss_dssp             CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--G-------------------------
T ss_pred             cchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--h-------------------------
Confidence            5433  5666667777777776665333  6666777777777776654222  1                         


Q ss_pred             cccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCC
Q 041908          660 HFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLS  739 (883)
Q Consensus       660 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls  739 (883)
                                                                  ..+++|+.|+|++|++++..|  ++.+++|+.|+++
T Consensus       306 --------------------------------------------~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~  339 (466)
T 1o6v_A          306 --------------------------------------------SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY  339 (466)
T ss_dssp             --------------------------------------------GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECC
T ss_pred             --------------------------------------------cCCCCCCEEECcCCcCCCchh--hccCccCCEeECC
Confidence                                                        114566777777777776555  5677777777777


Q ss_pred             CCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcc
Q 041908          740 HNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSG  793 (883)
Q Consensus       740 ~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g  793 (883)
                      +|++++.  ..++++++|+.|++++|++++.+|  +..+++|+.|++++|++++
T Consensus       340 ~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          340 NNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             SSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            7777754  356777777777777777776665  6677777777777777776

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3e-35  Score=335.84  Aligned_cols=360  Identities=23%  Similarity=0.300  Sum_probs=305.8

Q ss_pred             CCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCC
Q 041908          310 NNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSI  389 (883)
Q Consensus       310 n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~  389 (883)
                      +.+.+.++..   .+++++.|++.++.+..++. ...+++|++|++++|.+.+..|  +. .+++|++|++++|.+++..
T Consensus        34 ~~~~~~i~~~---~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~  106 (466)
T 1o6v_A           34 TNVTDTVSQT---DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP--LK-NLTKLVDILMNNNQIADIT  106 (466)
T ss_dssp             SSTTSEECHH---HHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GT-TCTTCCEEECCSSCCCCCG
T ss_pred             cccccccChh---HhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh--hh-ccccCCEEECCCCccccCh
Confidence            4444455542   56789999999999987653 4578999999999999987654  54 4999999999999998654


Q ss_pred             CccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCC
Q 041908          390 PPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNA  469 (883)
Q Consensus       390 p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  469 (883)
                      +  ++.+++|++|++++|.+. .++.  +..+++|++|++++|.+.+.  +.+..+++|++|++. |.+.+..+  +..+
T Consensus       107 ~--~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~~--~~~l  176 (466)
T 1o6v_A          107 P--LANLTNLTGLTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLKP--LANL  176 (466)
T ss_dssp             G--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCGG--GTTC
T ss_pred             h--hcCCCCCCEEECCCCCCC-CChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCchh--hccC
Confidence            4  999999999999999998 4554  57899999999999999874  358899999999996 55654433  8899


Q ss_pred             CCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeec
Q 041908          470 PSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFL  549 (883)
Q Consensus       470 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L  549 (883)
                      ++|++|++++|.+.+. + .+..+++|++|++++|.+++..|  +..+++|+.|++++|++.+.  ..+..+++|+.|++
T Consensus       177 ~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l  250 (466)
T 1o6v_A          177 TTLERLDISSNKVSDI-S-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL  250 (466)
T ss_dssp             TTCCEEECCSSCCCCC-G-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred             CCCCEEECcCCcCCCC-h-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEEC
Confidence            9999999999999854 3 48899999999999999998766  77899999999999999875  35788999999999


Q ss_pred             ccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCC
Q 041908          550 HNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGS  629 (883)
Q Consensus       550 ~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~  629 (883)
                      ++|.+++..|  +..+++|+.|++++|++++..+  +..+++|++|++++|++.+..|  +..+++|+.|++++|++++.
T Consensus       251 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~  324 (466)
T 1o6v_A          251 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI  324 (466)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC
T ss_pred             CCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc
Confidence            9999987654  8899999999999999997544  8899999999999999997544  88999999999999999865


Q ss_pred             CCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccc
Q 041908          630 IPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYM  709 (883)
Q Consensus       630 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  709 (883)
                      .|  +.                                                                     .+++|
T Consensus       325 ~~--~~---------------------------------------------------------------------~l~~L  333 (466)
T 1o6v_A          325 SP--VS---------------------------------------------------------------------SLTKL  333 (466)
T ss_dssp             GG--GG---------------------------------------------------------------------GCTTC
T ss_pred             hh--hc---------------------------------------------------------------------cCccC
Confidence            44  11                                                                     15788


Q ss_pred             cEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCcc
Q 041908          710 TGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLE  774 (883)
Q Consensus       710 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~  774 (883)
                      +.|++++|++++.  ..++.+++|+.|++++|++++.+|  ++.+++|+.|++++|++++ +|..
T Consensus       334 ~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~~  393 (466)
T 1o6v_A          334 QRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APVN  393 (466)
T ss_dssp             CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-CCBC
T ss_pred             CEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC-Cchh
Confidence            9999999999965  478999999999999999999888  8999999999999999997 3443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=4.7e-36  Score=323.11  Aligned_cols=258  Identities=31%  Similarity=0.528  Sum_probs=216.0

Q ss_pred             CCCEEECCCCcCCC--CCCccccCCCcccEEecCC-CcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEE
Q 041908          495 NLDVLLMSRNSLEG--DVSVPLSNLQVARILDISE-NKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTL  571 (883)
Q Consensus       495 ~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L  571 (883)
                      +++.|++++|.+++  .+|..+.++++|++|++++ |.+.+.+|..+..+++|++|++++|++++.+|..+.++++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            45556666666655  5566666666666666663 66666667777777777888888888877788888888888888


Q ss_pred             eccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCC-CCCEEEcCCCcCCCCCCcccccccccccCCCCCCCc
Q 041908          572 DLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLR-KIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGF  650 (883)
Q Consensus       572 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~-~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~  650 (883)
                      ++++|++++.+|..+..+++|++|++++|+++|.+|..+..++ +|+.|++++|++++.+|..+..              
T Consensus       131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~--------------  196 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--------------  196 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG--------------
T ss_pred             eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC--------------
Confidence            8888888888888888888888888888888888888888887 8888898888888777765533              


Q ss_pred             ccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCccccccc
Q 041908          651 VFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYL  730 (883)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l  730 (883)
                                                                             ++ |+.|||++|++++.+|..++.+
T Consensus       197 -------------------------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l  220 (313)
T 1ogq_A          197 -------------------------------------------------------LN-LAFVDLSRNMLEGDASVLFGSD  220 (313)
T ss_dssp             -------------------------------------------------------CC-CSEEECCSSEEEECCGGGCCTT
T ss_pred             -------------------------------------------------------Cc-ccEEECcCCcccCcCCHHHhcC
Confidence                                                                   23 7889999999999999999999


Q ss_pred             ccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCCCccCCCCCCcccC
Q 041908          731 QELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYR  810 (883)
Q Consensus       731 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~  810 (883)
                      ++|+.|+|++|++++.+|. +..+++|++|||++|+++|.+|..+..+++|+.|++++|+++|.+|...++..+....+.
T Consensus       221 ~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~  299 (313)
T 1ogq_A          221 KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA  299 (313)
T ss_dssp             SCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTC
T ss_pred             CCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhc
Confidence            9999999999999988777 889999999999999999999999999999999999999999999999888888888999


Q ss_pred             CCcCCCCCCCCCCC
Q 041908          811 GNLNLCGPAVLKNC  824 (883)
Q Consensus       811 gn~~lc~~~~~~~c  824 (883)
                      ||+.+||.|+. .|
T Consensus       300 ~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          300 NNKCLCGSPLP-AC  312 (313)
T ss_dssp             SSSEEESTTSS-CC
T ss_pred             CCCCccCCCCC-CC
Confidence            99999998865 46

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.5e-35  Score=338.09  Aligned_cols=347  Identities=20%  Similarity=0.174  Sum_probs=241.9

Q ss_pred             EEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCc
Q 041908          377 YLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDN  456 (883)
Q Consensus       377 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  456 (883)
                      .++.+++.++ .+|..+.  +.++.|++++|+++ .++...+..+++|++|++++|.+++..|..|.++++|++|++++|
T Consensus        15 ~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           15 AVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             EEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            4444455444 3443332  35555566665555 333333355666666666666666555666666666777777777


Q ss_pred             ccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCcccc
Q 041908          457 QFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEF  536 (883)
Q Consensus       457 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  536 (883)
                      ++++..+..|.++++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..|.++++|+.|++++|++++..+.
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence            66655555566677777777777777766666677777777777777777766666777777777777777777766666


Q ss_pred             ccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCC
Q 041908          537 SFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKI  616 (883)
Q Consensus       537 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L  616 (883)
                      .+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.+|.......+|++|++++|++++..+..+..+++|
T Consensus       171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  250 (477)
T 2id5_A          171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL  250 (477)
T ss_dssp             HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred             HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence            67777777777777777776666677777888888888877777777666666688888888888885444678888888


Q ss_pred             CEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecc
Q 041908          617 AIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKN  696 (883)
Q Consensus       617 ~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  696 (883)
                      +.|++++|++++..+..+..                                                            
T Consensus       251 ~~L~Ls~n~l~~~~~~~~~~------------------------------------------------------------  270 (477)
T 2id5_A          251 RFLNLSYNPISTIEGSMLHE------------------------------------------------------------  270 (477)
T ss_dssp             CEEECCSSCCCEECTTSCTT------------------------------------------------------------
T ss_pred             CeeECCCCcCCccChhhccc------------------------------------------------------------
Confidence            88888888877544433321                                                            


Q ss_pred             ccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCcccc
Q 041908          697 RYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELS  776 (883)
Q Consensus       697 ~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~  776 (883)
                               ++.|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+... 
T Consensus       271 ---------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~-  340 (477)
T 2id5_A          271 ---------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLW-  340 (477)
T ss_dssp             ---------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHH-
T ss_pred             ---------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHh-
Confidence                     4678889999999998888889999999999999999998888888999999999999999886543211 


Q ss_pred             CCCCCcEEEccCCcCcccCCC
Q 041908          777 ELNYLAIFNVSYNDLSGPTPN  797 (883)
Q Consensus       777 ~l~~L~~l~ls~N~l~g~ip~  797 (883)
                      -......+++..+...|..|.
T Consensus       341 ~~~~~~~~~~~~~~~~C~~p~  361 (477)
T 2id5_A          341 VFRRRWRLNFNRQQPTCATPE  361 (477)
T ss_dssp             HHTTTTSSCCTTCCCBEEESG
T ss_pred             HHhhhhccccCccCceeCCch
Confidence            112233455666766666664

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.2e-34  Score=341.09  Aligned_cols=335  Identities=22%  Similarity=0.215  Sum_probs=272.8

Q ss_pred             cCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEE
Q 041908          396 TVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHIL  475 (883)
Q Consensus       396 l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  475 (883)
                      +.+++.+++++|.+. .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            456777777777776 6777777778888888888888877777778888888888888888888877778888888888


Q ss_pred             EccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccc
Q 041908          476 DVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLN  555 (883)
Q Consensus       476 ~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  555 (883)
                      ++++|.+++..+..|+++++|++|++++|.+++..|..+..+++|++|++++|.+++..   +..+++|+.|++++|.++
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence            88888888665566788888888888888888888888888888888888888887653   455678888999988887


Q ss_pred             cccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccc
Q 041908          556 GSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFT  635 (883)
Q Consensus       556 ~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~  635 (883)
                      +.     ...++|+.|++++|.++... ..+  .++|+.|++++|.+++  +..+..+++|+.|++++|.+++.+|..+.
T Consensus       206 ~l-----~~~~~L~~L~ls~n~l~~~~-~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  275 (597)
T 3oja_B          206 TL-----AIPIAVEELDASHNSINVVR-GPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV  275 (597)
T ss_dssp             EE-----ECCTTCSEEECCSSCCCEEE-CSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             cc-----cCCchhheeeccCCcccccc-ccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence            42     34467999999999988543 322  3689999999999987  47788999999999999999877776553


Q ss_pred             cccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEcc
Q 041908          636 NIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLS  715 (883)
Q Consensus       636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs  715 (883)
                      .                                                                     +++|+.|+|+
T Consensus       276 ~---------------------------------------------------------------------l~~L~~L~Ls  286 (597)
T 3oja_B          276 K---------------------------------------------------------------------MQRLERLYIS  286 (597)
T ss_dssp             T---------------------------------------------------------------------CSSCCEEECT
T ss_pred             C---------------------------------------------------------------------ccCCCEEECC
Confidence            3                                                                     4678999999


Q ss_pred             CCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccC
Q 041908          716 SNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPT  795 (883)
Q Consensus       716 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~i  795 (883)
                      +|++++ +|..++.+++|+.|+|++|.++ .+|..++.+++|+.|||++|++++..   +..+++|+.|++++|+++|.+
T Consensus       287 ~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          287 NNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             TSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHH
T ss_pred             CCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChh
Confidence            999995 6777888999999999999999 67888999999999999999998653   667789999999999999975


Q ss_pred             CCCccCCCCCCcccCCCcCCCCCC
Q 041908          796 PNTKQFANFDESNYRGNLNLCGPA  819 (883)
Q Consensus       796 p~~~~~~~~~~~~~~gn~~lc~~~  819 (883)
                      +. ..+.++....+.+++..|+.+
T Consensus       362 ~~-~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          362 LR-ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             HH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred             HH-HHHHHHhhhccccccccCCcc
Confidence            43 346677777889999999863

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.9e-34  Score=321.66  Aligned_cols=335  Identities=22%  Similarity=0.217  Sum_probs=270.1

Q ss_pred             ccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCE
Q 041908          395 YTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHI  474 (883)
Q Consensus       395 ~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  474 (883)
                      .+++++.|++++|.+. .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++
T Consensus        43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            3567788888888876 777777778888888888888888777777888888888888888888887888888888889


Q ss_pred             EEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCcc
Q 041908          475 LDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSL  554 (883)
Q Consensus       475 L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l  554 (883)
                      |++++|.++...+..+.++++|++|++++|++++..+..+..+++|++|++++|++++.   .+..+++|+.|++++|.+
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            99988888855445568888899999999988888888888888999999999888765   245677889999999888


Q ss_pred             ccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCccc
Q 041908          555 NGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCF  634 (883)
Q Consensus       555 ~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~  634 (883)
                      ++.     ...++|+.|++++|+++.. |..  ..++|++|++++|++++.  ..+..+++|+.|++++|.+++..|..+
T Consensus       199 ~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~  268 (390)
T 3o6n_A          199 STL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF  268 (390)
T ss_dssp             SEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             ccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence            742     3346899999999998854 433  247899999999999863  578889999999999999887666544


Q ss_pred             ccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEc
Q 041908          635 TNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDL  714 (883)
Q Consensus       635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL  714 (883)
                      ..                                                                     +++|+.|+|
T Consensus       269 ~~---------------------------------------------------------------------l~~L~~L~L  279 (390)
T 3o6n_A          269 VK---------------------------------------------------------------------MQRLERLYI  279 (390)
T ss_dssp             TT---------------------------------------------------------------------CSSCCEEEC
T ss_pred             cc---------------------------------------------------------------------cccCCEEEC
Confidence            32                                                                     467899999


Q ss_pred             cCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCccc
Q 041908          715 SSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGP  794 (883)
Q Consensus       715 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~  794 (883)
                      ++|++++ +|..++.+++|++|+|++|+++ .+|..++.+++|+.|||++|++++. |  +..+++|+.|++++|+++|.
T Consensus       280 ~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          280 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence            9999984 6777788999999999999999 5677899999999999999999865 3  67788999999999999985


Q ss_pred             CCCCccCCCCCCcccCCCcCCCCC
Q 041908          795 TPNTKQFANFDESNYRGNLNLCGP  818 (883)
Q Consensus       795 ip~~~~~~~~~~~~~~gn~~lc~~  818 (883)
                      ... ..+..+....+.+++..|+.
T Consensus       355 ~~~-~~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          355 SLR-ALFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             HHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred             hHH-HHHHHHHhhcccccCceecc
Confidence            433 34455666667788877764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.3e-32  Score=299.69  Aligned_cols=304  Identities=21%  Similarity=0.302  Sum_probs=179.9

Q ss_pred             CCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeE
Q 041908          372 LPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWL  451 (883)
Q Consensus       372 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  451 (883)
                      +++|++|++++|.+. .++ .+..+++|++|++++|.++ .++.  +..+++|++|++++|.++..  +.          
T Consensus        43 l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~----------  105 (347)
T 4fmz_A           43 LESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SA----------  105 (347)
T ss_dssp             HTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GG----------
T ss_pred             cccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hH----------
Confidence            566666666666665 333 3556666666666666665 3333  34555555555555555432  23          


Q ss_pred             EccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCc
Q 041908          452 YLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLY  531 (883)
Q Consensus       452 ~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  531 (883)
                                    +..+++|++|++++|.+.+. +. +..+++|++|++++|.....++. +..+++|++|++++|.+.
T Consensus       106 --------------~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~  168 (347)
T 4fmz_A          106 --------------LQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK  168 (347)
T ss_dssp             --------------GTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             --------------HcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcC
Confidence                          44445555555555554432 22 44555555555555543333322 455555555555555554


Q ss_pred             CccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhc
Q 041908          532 GPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLC  611 (883)
Q Consensus       532 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~  611 (883)
                      +..+  +..+++|++|++++|.+++ ++. +..+++|+.|++++|++++..+  +..+++|++|++++|++++..+  +.
T Consensus       169 ~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~  240 (347)
T 4fmz_A          169 DVTP--IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA  240 (347)
T ss_dssp             CCGG--GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred             Cchh--hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence            4333  4555566666666666653 222 5566666666666666664433  5666667777777776664332  66


Q ss_pred             CCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEE
Q 041908          612 HLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVK  691 (883)
Q Consensus       612 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  691 (883)
                      .+++|+.|++++|.+++. + .+                                                         
T Consensus       241 ~l~~L~~L~l~~n~l~~~-~-~~---------------------------------------------------------  261 (347)
T 4fmz_A          241 NLSQLTWLEIGTNQISDI-N-AV---------------------------------------------------------  261 (347)
T ss_dssp             TCTTCCEEECCSSCCCCC-G-GG---------------------------------------------------------
T ss_pred             cCCCCCEEECCCCccCCC-h-hH---------------------------------------------------------
Confidence            677777777777766531 1 11                                                         


Q ss_pred             EeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccC
Q 041908          692 FMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQI  771 (883)
Q Consensus       692 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~i  771 (883)
                                  ..+++|+.|++++|++++. | .+..+++|+.|+|++|.+++..|..++.+++|+.|++++|++++..
T Consensus       262 ------------~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  327 (347)
T 4fmz_A          262 ------------KDLTKLKMLNVGSNQISDI-S-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR  327 (347)
T ss_dssp             ------------TTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred             ------------hcCCCcCEEEccCCccCCC-h-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccccc
Confidence                        1145677777777777743 3 4677777888888888887777777777888888888888877665


Q ss_pred             CccccCCCCCcEEEccCCcCc
Q 041908          772 PLELSELNYLAIFNVSYNDLS  792 (883)
Q Consensus       772 p~~l~~l~~L~~l~ls~N~l~  792 (883)
                      |  +..+++|+.|++++|+++
T Consensus       328 ~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          328 P--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             G--GGGCTTCSEESSSCC---
T ss_pred             C--hhhhhccceeehhhhccc
Confidence            5  677777888888887764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=4.6e-32  Score=297.35  Aligned_cols=305  Identities=21%  Similarity=0.328  Sum_probs=214.6

Q ss_pred             CCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCC
Q 041908          346 SKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLA  425 (883)
Q Consensus       346 ~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~  425 (883)
                      .+++|++|++++|.+.. +|. +.. +++|++|++++|.+++ ++. +..+++|++|++++|.++ .++.  +..+++|+
T Consensus        42 ~l~~L~~L~l~~~~i~~-~~~-~~~-~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~  113 (347)
T 4fmz_A           42 ELESITKLVVAGEKVAS-IQG-IEY-LTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKIT-DISA--LQNLTNLR  113 (347)
T ss_dssp             HHTTCSEEECCSSCCCC-CTT-GGG-CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCS
T ss_pred             hcccccEEEEeCCcccc-chh-hhh-cCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCccc-CchH--HcCCCcCC
Confidence            57899999999999864 443 544 8999999999999985 444 899999999999999998 5653  57888888


Q ss_pred             EEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCc
Q 041908          426 FMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNS  505 (883)
Q Consensus       426 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~  505 (883)
                      +|++++|.+.+..+  +..+++|++|++++|.....++. +..+++|++|++++|.+.+..+  +..+++|++|++++|.
T Consensus       114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred             EEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence            88888888775432  55666666666666644433332 4555555555555555553322  4445555555555554


Q ss_pred             CCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCcc
Q 041908          506 LEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPL  585 (883)
Q Consensus       506 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~  585 (883)
                      +.                        +..+  +..+++|+.|++++|.+++..+  +..+++|++|++++|++++..+  
T Consensus       189 l~------------------------~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--  238 (347)
T 4fmz_A          189 IE------------------------DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--  238 (347)
T ss_dssp             CC------------------------CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred             cc------------------------cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence            44                        3322  4455556666666666553322  5666677777777777764333  


Q ss_pred             ccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchh
Q 041908          586 INEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAIS  665 (883)
Q Consensus       586 l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  665 (883)
                      +..+++|++|++++|++++.  +.+..+++|+.|++++|++++. | .+                               
T Consensus       239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~-------------------------------  283 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-VL-------------------------------  283 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GG-------------------------------
T ss_pred             hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-hh-------------------------------
Confidence            66777777777777777652  4577778888888888877642 1 11                               


Q ss_pred             hhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCc
Q 041908          666 AYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSG  745 (883)
Q Consensus       666 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  745 (883)
                                                            ..+++|+.|++++|++++..|..++.+++|++|+|++|++++
T Consensus       284 --------------------------------------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          284 --------------------------------------NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD  325 (347)
T ss_dssp             --------------------------------------GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred             --------------------------------------cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence                                                  115678999999999998999999999999999999999998


Q ss_pred             CCCccccCcCCCCEEECCCCccc
Q 041908          746 SIPRSFSNLKMIESMDLSYNKLR  768 (883)
Q Consensus       746 ~ip~~l~~l~~L~~LdLs~N~Ls  768 (883)
                      ..|  ++.+++|+.||+++|+++
T Consensus       326 ~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          326 IRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CGG--GGGCTTCSEESSSCC---
T ss_pred             ccC--hhhhhccceeehhhhccc
Confidence            777  899999999999999986

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7.2e-33  Score=308.79  Aligned_cols=333  Identities=19%  Similarity=0.142  Sum_probs=231.3

Q ss_pred             CCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeE
Q 041908          372 LPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWL  451 (883)
Q Consensus       372 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  451 (883)
                      +++++.|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            345555555555555322223455555555555555555 3333334555666666666666665555556666677777


Q ss_pred             EccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCc
Q 041908          452 YLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLY  531 (883)
Q Consensus       452 ~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  531 (883)
                      ++++|+++...+..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++.   .+..+++|+.|++++|.+.
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence            7777776654444456677777777777777766666677777777777777777654   2455677777888877765


Q ss_pred             CccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhc
Q 041908          532 GPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLC  611 (883)
Q Consensus       532 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~  611 (883)
                      +.     ...++|++|++++|.++.. |..  ..++|+.|++++|++++.  .++..+++|++|++++|++++..|..+.
T Consensus       200 ~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (390)
T 3o6n_A          200 TL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV  269 (390)
T ss_dssp             EE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             cc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence            42     2345788888888888743 433  247899999999999864  5788899999999999999988899999


Q ss_pred             CCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEE
Q 041908          612 HLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVK  691 (883)
Q Consensus       612 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  691 (883)
                      .+++|+.|++++|++++. |..+                                                         
T Consensus       270 ~l~~L~~L~L~~n~l~~~-~~~~---------------------------------------------------------  291 (390)
T 3o6n_A          270 KMQRLERLYISNNRLVAL-NLYG---------------------------------------------------------  291 (390)
T ss_dssp             TCSSCCEEECCSSCCCEE-ECSS---------------------------------------------------------
T ss_pred             ccccCCEEECCCCcCccc-Cccc---------------------------------------------------------
Confidence            999999999999988642 2111                                                         


Q ss_pred             EeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccC
Q 041908          692 FMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQI  771 (883)
Q Consensus       692 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~i  771 (883)
                                  ..+++|+.|||++|+++ .+|..++.+++|+.|+|++|++++. |  ++.+++|+.|++++|++++.-
T Consensus       292 ------------~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~  355 (390)
T 3o6n_A          292 ------------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS  355 (390)
T ss_dssp             ------------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred             ------------CCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchh
Confidence                        12578999999999999 7788899999999999999999855 3  788999999999999998754


Q ss_pred             CccccCCCCCcEEEccCCcCccc
Q 041908          772 PLELSELNYLAIFNVSYNDLSGP  794 (883)
Q Consensus       772 p~~l~~l~~L~~l~ls~N~l~g~  794 (883)
                      ...+  +..+....+..+...+.
T Consensus       356 ~~~~--~~~~~~~~~~~~~~~c~  376 (390)
T 3o6n_A          356 LRAL--FRNVARPAVDDADQHCK  376 (390)
T ss_dssp             HHHH--TTTCCTTTBCCCCSCCC
T ss_pred             HHHH--HHHHHhhcccccCceec
Confidence            3322  22333333445544443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=4.1e-32  Score=319.43  Aligned_cols=312  Identities=18%  Similarity=0.151  Sum_probs=219.8

Q ss_pred             CCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEE
Q 041908          373 PELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLY  452 (883)
Q Consensus       373 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  452 (883)
                      ++++.+++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            44555555555554333333445555555555555554 23322234555555555555555555555556666666666


Q ss_pred             ccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcC
Q 041908          453 LNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYG  532 (883)
Q Consensus       453 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  532 (883)
                      +++|.+++..+..|..+++|++|++++|.+++..|..++.+++|++|++++|.+++..   +..+++|+.|++++|.+.+
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence            6666666555555566777777777777777666666777777777777777776542   4456677777777777654


Q ss_pred             ccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcC
Q 041908          533 PLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCH  612 (883)
Q Consensus       533 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~  612 (883)
                      .     ...++|+.|++++|.++. +|..+  .++|+.|+|++|.+++  +.++..+++|+.|+|++|.+++.+|..+..
T Consensus       207 l-----~~~~~L~~L~ls~n~l~~-~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~  276 (597)
T 3oja_B          207 L-----AIPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK  276 (597)
T ss_dssp             E-----ECCTTCSEEECCSSCCCE-EECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             c-----cCCchhheeeccCCcccc-ccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence            2     234578888888888763 33322  3689999999999986  367888999999999999999888999999


Q ss_pred             CCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEE
Q 041908          613 LRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKF  692 (883)
Q Consensus       613 l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  692 (883)
                      +++|+.|++++|.+++. |..+                                                          
T Consensus       277 l~~L~~L~Ls~N~l~~l-~~~~----------------------------------------------------------  297 (597)
T 3oja_B          277 MQRLERLYISNNRLVAL-NLYG----------------------------------------------------------  297 (597)
T ss_dssp             CSSCCEEECTTSCCCEE-ECSS----------------------------------------------------------
T ss_pred             ccCCCEEECCCCCCCCC-Cccc----------------------------------------------------------
Confidence            99999999999988752 2211                                                          


Q ss_pred             eeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCC
Q 041908          693 MAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIP  772 (883)
Q Consensus       693 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip  772 (883)
                                 ..+++|+.|||++|.++ .+|..++.+++|+.|+|++|.+++. |  ++.+++|+.|+|++|++++..+
T Consensus       298 -----------~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~  362 (597)
T 3oja_B          298 -----------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL  362 (597)
T ss_dssp             -----------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred             -----------ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhH
Confidence                       12578899999999999 7888899999999999999999965 3  7788999999999999997644

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=4.4e-35  Score=334.80  Aligned_cols=381  Identities=18%  Similarity=0.143  Sum_probs=240.9

Q ss_pred             CCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCC----CCCccccccCcccEEeccCCcccCccchhHhhCCC-
Q 041908          348 RDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEG----SIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCV-  422 (883)
Q Consensus       348 ~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~-  422 (883)
                      ++|++|++++|++.......+...+++|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..++..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4566777777776654444433347888888888888774    34566777788888888888887555556656666 


Q ss_pred             ---CCCEEEccCcccCC----cCcccccCCCCCCeEEccCcccCcccccccc-----CCCCCCEEEccCCccCCC----c
Q 041908          423 ---SLAFMNVSHNYFGG----QIFPKYMSMTQLAWLYLNDNQFTGRLEEGLL-----NAPSLHILDVSNNMLSGQ----L  486 (883)
Q Consensus       423 ---~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~ls~n~l~~~----~  486 (883)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++.    +
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               68888888888774    3466677788888888888887654333222     245688888888877753    3


Q ss_pred             chhhhCCCCCCEEECCCCcCCCCCCcccc-----CCCcccEEecCCCcCcCc----cccccccCCCcCeeecccCccccc
Q 041908          487 PHWVGNFSNLDVLLMSRNSLEGDVSVPLS-----NLQVARILDISENKLYGP----LEFSFNHSSSLWHLFLHNNSLNGS  557 (883)
Q Consensus       487 p~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~  557 (883)
                      +..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+++.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            55566677888888888877654333332     245777777777777663    355556667777777777776643


Q ss_pred             cch-----hhhcCCCCCEEeccCCcCCcc----CCccccCCCCCcEEEccCCcccccCchhhcC-----CCCCCEEEcCC
Q 041908          558 IPS-----ALFQSSQLMTLDLRDNEFSGN----IPPLINEDSNLRALLLRGNNLQGNIPQQLCH-----LRKIAIVDISY  623 (883)
Q Consensus       558 ~p~-----~~~~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~-----l~~L~~L~ls~  623 (883)
                      ...     .+..+++|++|++++|++++.    ++..+..+++|++|++++|++.+..+..+..     .++|+.|++++
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  322 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  322 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence            221     122467777777777777753    4556666777777777777776544444332     25777777777


Q ss_pred             CcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccc
Q 041908          624 NLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKG  703 (883)
Q Consensus       624 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  703 (883)
                      |.+++.....+...                                                                 .
T Consensus       323 n~l~~~~~~~l~~~-----------------------------------------------------------------l  337 (461)
T 1z7x_W          323 CSFTAACCSHFSSV-----------------------------------------------------------------L  337 (461)
T ss_dssp             SCCBGGGHHHHHHH-----------------------------------------------------------------H
T ss_pred             CCCchHHHHHHHHH-----------------------------------------------------------------H
Confidence            76653211100000                                                                 0


Q ss_pred             cccccccEEEccCCcCcccCcccccc-----cccCCeeeCCCCcCCc----CCCccccCcCCCCEEECCCCcccccCCcc
Q 041908          704 GVLEYMTGLDLSSNELTGEIPSAIGY-----LQELHALNLSHNHLSG----SIPRSFSNLKMIESMDLSYNKLRGQIPLE  774 (883)
Q Consensus       704 ~~l~~L~~LdLs~N~l~g~ip~~l~~-----l~~L~~L~Ls~N~l~g----~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~  774 (883)
                      ..+++|+.|||++|++++..+..+..     .+.|++|+|++|++++    .+|..+..+++|++|||++|++++.-...
T Consensus       338 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~  417 (461)
T 1z7x_W          338 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ  417 (461)
T ss_dssp             HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHH
T ss_pred             hhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHH
Confidence            01356677777777777655554443     4577777777777775    66777777777777777777776541111


Q ss_pred             cc-----CCCCCcEEEccCCcCcc
Q 041908          775 LS-----ELNYLAIFNVSYNDLSG  793 (883)
Q Consensus       775 l~-----~l~~L~~l~ls~N~l~g  793 (883)
                      +.     ....|+.|++.++.+..
T Consensus       418 l~~~l~~~~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          418 LVESVRQPGCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             HHHHhccCCcchhheeecccccCH
Confidence            11     12345556555555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.98  E-value=2.9e-31  Score=288.85  Aligned_cols=290  Identities=19%  Similarity=0.233  Sum_probs=166.9

Q ss_pred             cccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEc
Q 041908          398 RLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDV  477 (883)
Q Consensus       398 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  477 (883)
                      +++.++++++.+. .+|..+   .++++.|++++|.+.+..+..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            5677777777766 666543   245566666666655554555555555555555555555555555555555555555


Q ss_pred             cCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccc
Q 041908          478 SNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGS  557 (883)
Q Consensus       478 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~  557 (883)
                      ++|.++ .+|..+.  ++|++|++++|++++..+..+.++++|+.|++++|.+..                      .+.
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~  164 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN----------------------SGF  164 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG----------------------GGS
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc----------------------CCC
Confidence            555554 3333332  455555555555554444444455555555555554431                      113


Q ss_pred             cchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccc
Q 041908          558 IPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNI  637 (883)
Q Consensus       558 ~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~  637 (883)
                      .|..+..+ +|+.|++++|++++ +|..+.  ++|++|++++|++++..|..+..+++|+.|++++|++++..|..+.. 
T Consensus       165 ~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-  239 (332)
T 2ft3_A          165 EPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF-  239 (332)
T ss_dssp             CTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG-
T ss_pred             CcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC-
Confidence            33344444 55555555555553 333332  45666666666666555556666666666666666665544433321 


Q ss_pred             cccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCC
Q 041908          638 WPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSN  717 (883)
Q Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N  717 (883)
                                                                                          +++|+.|||++|
T Consensus       240 --------------------------------------------------------------------l~~L~~L~L~~N  251 (332)
T 2ft3_A          240 --------------------------------------------------------------------LPTLRELHLDNN  251 (332)
T ss_dssp             --------------------------------------------------------------------CTTCCEEECCSS
T ss_pred             --------------------------------------------------------------------CCCCCEEECCCC
Confidence                                                                                345667777777


Q ss_pred             cCcccCcccccccccCCeeeCCCCcCCcCCCccccCc------CCCCEEECCCCccc--ccCCccccCCCCCcEEEccCC
Q 041908          718 ELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNL------KMIESMDLSYNKLR--GQIPLELSELNYLAIFNVSYN  789 (883)
Q Consensus       718 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l------~~L~~LdLs~N~Ls--g~ip~~l~~l~~L~~l~ls~N  789 (883)
                      +++ .+|..++.+++|++|+|++|++++..+..|...      ..|+.|++++|.++  +..|.++..++.|+.+++++|
T Consensus       252 ~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          252 KLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             CCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             cCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            777 667777777777777777777776666666543      56777888888776  566677777778888888776


Q ss_pred             c
Q 041908          790 D  790 (883)
Q Consensus       790 ~  790 (883)
                      +
T Consensus       331 ~  331 (332)
T 2ft3_A          331 K  331 (332)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=6.2e-31  Score=286.23  Aligned_cols=260  Identities=24%  Similarity=0.305  Sum_probs=215.5

Q ss_pred             ccchhhhcCCC-----CCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCc
Q 041908          363 MLPDNFGMILP-----ELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQ  437 (883)
Q Consensus       363 ~~p~~~~~~l~-----~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~  437 (883)
                      .+|..+...+|     +++.++++++.++ .+|..+.  ++|++|++++|.+. .++...+.++++|++|++++|.+++.
T Consensus        18 ~lp~~~~~~cp~~c~c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~   93 (332)
T 2ft3_A           18 SLPPTYSAMCPFGCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKI   93 (332)
T ss_dssp             -------CCCCSSCEEETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             cCCCcccCCCCCCCcccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCcc
Confidence            45554443333     7999999999998 6777663  68999999999998 56555568999999999999999998


Q ss_pred             CcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCC--CCCCcccc
Q 041908          438 IFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLE--GDVSVPLS  515 (883)
Q Consensus       438 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--~~~~~~l~  515 (883)
                      .+..+..+++|++|++++|+++ .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.++  +..+..+.
T Consensus        94 ~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  170 (332)
T 2ft3_A           94 HEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD  170 (332)
T ss_dssp             CGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC
T ss_pred             CHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccccc
Confidence            8999999999999999999998 4555443  89999999999999777778999999999999999996  47777888


Q ss_pred             CCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEE
Q 041908          516 NLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRAL  595 (883)
Q Consensus       516 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  595 (883)
                      .+ +|+.|++++|++++ +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus       171 ~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  246 (332)
T 2ft3_A          171 GL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLREL  246 (332)
T ss_dssp             SC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEE
T ss_pred             CC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEE
Confidence            88 99999999999987 444433  689999999999987777888889999999999999998777788889999999


Q ss_pred             EccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCccc
Q 041908          596 LLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCF  634 (883)
Q Consensus       596 ~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~  634 (883)
                      ++++|+++ .+|..+..+++|+.|++++|++++..+..|
T Consensus       247 ~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~  284 (332)
T 2ft3_A          247 HLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF  284 (332)
T ss_dssp             ECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred             ECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence            99999988 788888888999999999888876554444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=3.2e-30  Score=280.42  Aligned_cols=268  Identities=21%  Similarity=0.252  Sum_probs=177.9

Q ss_pred             CCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecC
Q 041908          447 QLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDIS  526 (883)
Q Consensus       447 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  526 (883)
                      .+++|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|+++. +|..+.  ++|+.|+++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~  129 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVH  129 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECC
Confidence            44455555555554444455555555555555555555555555556666666666665552 333322  566666666


Q ss_pred             CCcCcCccccccccCCCcCeeecccCcccc--ccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccc
Q 041908          527 ENKLYGPLEFSFNHSSSLWHLFLHNNSLNG--SIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQG  604 (883)
Q Consensus       527 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g  604 (883)
                      +|++.+..+..+..+++|+.|++++|.++.  ..+..+..+++|++|++++|+++. +|..+.  ++|++|++++|++++
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~  206 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITK  206 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCE
T ss_pred             CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCc
Confidence            666666555566666667777777766642  456667777778888888877774 555443  678888888888887


Q ss_pred             cCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhh
Q 041908          605 NIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNREL  684 (883)
Q Consensus       605 ~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  684 (883)
                      ..|..+..+++|+.|++++|++++..|..+..                                                
T Consensus       207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------------------------------  238 (330)
T 1xku_A          207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLAN------------------------------------------------  238 (330)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCCEECTTTGGG------------------------------------------------
T ss_pred             cCHHHhcCCCCCCEEECCCCcCceeChhhccC------------------------------------------------
Confidence            77777888888888888888776544433321                                                


Q ss_pred             cceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCc------CCCC
Q 041908          685 RQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNL------KMIE  758 (883)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l------~~L~  758 (883)
                                           +++|+.|||++|+++ .+|..+..+++|++|+|++|++++..+..|...      ..|+
T Consensus       239 ---------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~  296 (330)
T 1xku_A          239 ---------------------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS  296 (330)
T ss_dssp             ---------------------STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCS
T ss_pred             ---------------------CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccccccc
Confidence                                 456778888888888 778788888888888888888887776666543      6788


Q ss_pred             EEECCCCcccc--cCCccccCCCCCcEEEccCCc
Q 041908          759 SMDLSYNKLRG--QIPLELSELNYLAIFNVSYND  790 (883)
Q Consensus       759 ~LdLs~N~Lsg--~ip~~l~~l~~L~~l~ls~N~  790 (883)
                      .|++++|.+..  ..|..+..+..++.+++++|+
T Consensus       297 ~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             EEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ceEeecCcccccccCccccccccceeEEEecccC
Confidence            88888888763  556777888888888888874

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.8e-30  Score=282.43  Aligned_cols=251  Identities=20%  Similarity=0.239  Sum_probs=194.5

Q ss_pred             CCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEE
Q 041908          373 PELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLY  452 (883)
Q Consensus       373 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  452 (883)
                      .+++.++++++.++ .+|..+.  +.+++|++++|+++ .++...+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus        31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            36888999988887 5665553  67888999999888 55555567888888888888888888788888888888888


Q ss_pred             ccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCC--CCCccccCCCcccEEecCCCcC
Q 041908          453 LNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEG--DVSVPLSNLQVARILDISENKL  530 (883)
Q Consensus       453 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l  530 (883)
                      +++|+++ .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.+..  ..+..+.++++|++|++++|.+
T Consensus       107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            8888887 4454443  688888888888887777778888888888888888853  6667788888888888888887


Q ss_pred             cCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhh
Q 041908          531 YGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQL  610 (883)
Q Consensus       531 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l  610 (883)
                      .+. |..+.  ++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+
T Consensus       184 ~~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l  259 (330)
T 1xku_A          184 TTI-PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL  259 (330)
T ss_dssp             CSC-CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred             ccC-Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence            653 33332  67888888888888777777888888888888888888777777778888888888888887 677777


Q ss_pred             cCCCCCCEEEcCCCcCCCCCCccc
Q 041908          611 CHLRKIAIVDISYNLLDGSIPSCF  634 (883)
Q Consensus       611 ~~l~~L~~L~ls~N~l~~~~p~~~  634 (883)
                      ..+++|+.|++++|++++..+..|
T Consensus       260 ~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          260 ADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             ccCCCcCEEECCCCcCCccChhhc
Confidence            778888888888888775444433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2.9e-33  Score=319.68  Aligned_cols=391  Identities=16%  Similarity=0.111  Sum_probs=225.5

Q ss_pred             ccceEEEcccCcCCccCch-hhhcCCCCCEEEccCCCCcCC----cchHHHhcCCCCcEEEcccccccccccCCCCCCCc
Q 041908          276 FQLKVLNLRRCNISGTIPS-FLQYQYDLRYIDLSHNNLAGT----FPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDL  350 (883)
Q Consensus       276 ~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L  350 (883)
                      ++|++|++++|.++..... .+..+++|++|++++|.+++.    ++..+ ..+++|++|++++                
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l-~~~~~L~~L~Ls~----------------   65 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL-RVNPALAELNLRS----------------   65 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHH-HTCTTCCEEECTT----------------
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHH-HhCCCcCEEeCCC----------------
Confidence            3677888888877654433 366777788888888777632    23322 2445555554444                


Q ss_pred             cEEEccCCccccccchhhhcCCC----CCcEEeCCCCcCCC----CCCccccccCcccEEeccCCcccCccchhHhh---
Q 041908          351 LHLVISNNNFIGMLPDNFGMILP----ELVYLDMSQNSFEG----SIPPSMGYTVRLLFLDLSSNNFSGELPKQFLT---  419 (883)
Q Consensus       351 ~~L~ls~n~l~~~~p~~~~~~l~----~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~---  419 (883)
                             |.+.+..+..+...++    +|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..+..   
T Consensus        66 -------n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  138 (461)
T 1z7x_W           66 -------NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL  138 (461)
T ss_dssp             -------CCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred             -------CcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence                   4444433434433344    57777777777763    44666777777777777777776433333222   


Q ss_pred             -CCCCCCEEEccCcccCCcC----cccccCCCCCCeEEccCcccCcccccccc-----CCCCCCEEEccCCccCCCcchh
Q 041908          420 -GCVSLAFMNVSHNYFGGQI----FPKYMSMTQLAWLYLNDNQFTGRLEEGLL-----NAPSLHILDVSNNMLSGQLPHW  489 (883)
Q Consensus       420 -~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~ls~n~l~~~~p~~  489 (883)
                       ..++|++|++++|.+++..    +..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.... 
T Consensus       139 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-  217 (461)
T 1z7x_W          139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR-  217 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-
T ss_pred             cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH-
Confidence             2345666666666555432    22233344555555555544432222221     123444444444444432000 


Q ss_pred             hhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCcc-----ccccccCCCcCeeecccCccccc----cch
Q 041908          490 VGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPL-----EFSFNHSSSLWHLFLHNNSLNGS----IPS  560 (883)
Q Consensus       490 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-----~~~~~~~~~L~~L~L~~n~l~~~----~p~  560 (883)
                                         .++..+..+++|+.|++++|.+.+..     +..+..+++|++|++++|.+++.    ++.
T Consensus       218 -------------------~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  278 (461)
T 1z7x_W          218 -------------------DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR  278 (461)
T ss_dssp             -------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             -------------------HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence                               02333444445555555555443321     11122355666666666666643    566


Q ss_pred             hhhcCCCCCEEeccCCcCCccCCccccC-----CCCCcEEEccCCccccc----CchhhcCCCCCCEEEcCCCcCCCCCC
Q 041908          561 ALFQSSQLMTLDLRDNEFSGNIPPLINE-----DSNLRALLLRGNNLQGN----IPQQLCHLRKIAIVDISYNLLDGSIP  631 (883)
Q Consensus       561 ~~~~~~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~L~~N~l~g~----~p~~l~~l~~L~~L~ls~N~l~~~~p  631 (883)
                      .+..+++|++|++++|++++..+..+..     .++|++|++++|.+++.    ++..+..+++|+.||+++|++++..+
T Consensus       279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~  358 (461)
T 1z7x_W          279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV  358 (461)
T ss_dssp             HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred             HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence            6666777777777777776543333322     25788888888887755    46667777888888888887765433


Q ss_pred             cccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccE
Q 041908          632 SCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTG  711 (883)
Q Consensus       632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  711 (883)
                      ..+....                                                               . ...+.|+.
T Consensus       359 ~~l~~~l---------------------------------------------------------------~-~~~~~L~~  374 (461)
T 1z7x_W          359 RELCQGL---------------------------------------------------------------G-QPGSVLRV  374 (461)
T ss_dssp             HHHHHHH---------------------------------------------------------------T-STTCCCCE
T ss_pred             HHHHHHH---------------------------------------------------------------c-CCCCceEE
Confidence            3221100                                                               0 01357888


Q ss_pred             EEccCCcCcc----cCcccccccccCCeeeCCCCcCCcCCCcccc-----CcCCCCEEECCCCcccccCCcc
Q 041908          712 LDLSSNELTG----EIPSAIGYLQELHALNLSHNHLSGSIPRSFS-----NLKMIESMDLSYNKLRGQIPLE  774 (883)
Q Consensus       712 LdLs~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~-----~l~~L~~LdLs~N~Lsg~ip~~  774 (883)
                      |||++|++++    .+|..+..+++|++|+|++|++++.-...+.     ....|+.|++.++......+..
T Consensus       375 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~  446 (461)
T 1z7x_W          375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR  446 (461)
T ss_dssp             EECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred             EECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHH
Confidence            9999999986    7888888899999999999999865222222     2346778888777776544443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=1.4e-30  Score=282.08  Aligned_cols=281  Identities=18%  Similarity=0.195  Sum_probs=236.2

Q ss_pred             CCcHHHHHHHHHhhhcCCcCCcccccCCccCCCC--CCCCCCCCccceeecCCCCCCCCCCcCCCCCCEEECCCCCCCCC
Q 041908           26 SCLDNERIGLLEIKTFIKSVSDMQFADAILVSWV--DNRTSDCCSWERIKCNVTTANYNNNGSLKQLKILNIGFNSFSES  103 (883)
Q Consensus        26 ~c~~~~~~all~~k~~~~~~~~~~~~~~~l~sW~--~~~~~~cc~w~gv~C~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~  103 (883)
                      .+..+|++||++||+++..+     +.+.+.+|.  .....++|.|.|+.|+..... ......+++++|+|++|.+. .
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~-----~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~-l~~~~~~~l~~L~L~~n~l~-~   95 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNAD-----RNRWHSAWRQANSNNPQIETRTGRALKATADL-LEDATQPGRVALELRSVPLP-Q   95 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHC-----CTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHH-HHHHTSTTCCEEEEESSCCS-S
T ss_pred             ccCchHHHHHHHHHHhccCC-----chhhhhhhcccccccccccccCCcchhhhHHH-HhcccccceeEEEccCCCch-h
Confidence            35678999999999988432     234567883  123468999999999632100 00012468999999999998 6


Q ss_pred             CchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCE
Q 041908          104 LVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVE  183 (883)
Q Consensus       104 ~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~  183 (883)
                      +|+.++++++|++|+|++|.+. . +| ..++++++|++|+|++|.+. .+|                 ..+.++++|++
T Consensus        96 lp~~l~~l~~L~~L~L~~n~l~-~-lp-~~~~~l~~L~~L~Ls~n~l~-~lp-----------------~~l~~l~~L~~  154 (328)
T 4fcg_A           96 FPDQAFRLSHLQHMTIDAAGLM-E-LP-DTMQQFAGLETLTLARNPLR-ALP-----------------ASIASLNRLRE  154 (328)
T ss_dssp             CCSCGGGGTTCSEEEEESSCCC-C-CC-SCGGGGTTCSEEEEESCCCC-CCC-----------------GGGGGCTTCCE
T ss_pred             cChhhhhCCCCCEEECCCCCcc-c-hh-HHHhccCCCCEEECCCCccc-cCc-----------------HHHhcCcCCCE
Confidence            7888999999999999999998 3 88 58999999999999999997 666                 78999999999


Q ss_pred             EEccCCcCCCCCCccccC---------CCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcCCC
Q 041908          184 LNLSWNKLDGSLPQCLSN---------LTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSR  254 (883)
Q Consensus       184 L~Ls~n~l~~~~p~~l~~---------l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~  254 (883)
                      |+|++|++.+.+|..+..         +++|++|++++|.++ .+| ..++++++|++|++++|++++ ++. .+..+++
T Consensus       155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp-~~l~~l~~L~~L~L~~N~l~~-l~~-~l~~l~~  230 (328)
T 4fcg_A          155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLP-ASIANLQNLKSLKIRNSPLSA-LGP-AIHHLPK  230 (328)
T ss_dssp             EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCC-GGGGGCTTCCEEEEESSCCCC-CCG-GGGGCTT
T ss_pred             EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cch-HhhcCCCCCCEEEccCCCCCc-Cch-hhccCCC
Confidence            999999999999988765         999999999999999 899 779999999999999999995 554 5889999


Q ss_pred             CcEEEccCcccccCCC-CCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcc
Q 041908          255 LEVLQISRLQIETENF-PWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLF  333 (883)
Q Consensus       255 L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~  333 (883)
                      |++|++++|.+....+ .+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|.++. ++++|+.+++.
T Consensus       231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~-~L~~L~~l~l~  309 (328)
T 4fcg_A          231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA-QLPANCIILVP  309 (328)
T ss_dssp             CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG-GSCTTCEEECC
T ss_pred             CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh-hccCceEEeCC
Confidence            9999999988776554 455678999999999999999999999999999999999999999999876 88999998888


Q ss_pred             cccccc
Q 041908          334 NNFLKG  339 (883)
Q Consensus       334 ~n~l~~  339 (883)
                      .+.+..
T Consensus       310 ~~~~~~  315 (328)
T 4fcg_A          310 PHLQAQ  315 (328)
T ss_dssp             GGGSCC
T ss_pred             HHHHHH
Confidence            776554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=1e-28  Score=265.53  Aligned_cols=252  Identities=23%  Similarity=0.235  Sum_probs=187.1

Q ss_pred             EEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCc--cccccccCCCcCeeeccc
Q 041908          474 ILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGP--LEFSFNHSSSLWHLFLHN  551 (883)
Q Consensus       474 ~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~~L~~L~L~~  551 (883)
                      .++.+++.++ .+|..+.  ++|++|++++|+++...+..+.++++|++|++++|.+...  .+..+..+++|++|++++
T Consensus        11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            4455555444 3343222  4556666666666544444455666666666666666532  244555566777777777


Q ss_pred             CccccccchhhhcCCCCCEEeccCCcCCccCC-ccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCC-C
Q 041908          552 NSLNGSIPSALFQSSQLMTLDLRDNEFSGNIP-PLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDG-S  629 (883)
Q Consensus       552 n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~-~  629 (883)
                      |.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|++.+..|..+..+++|+.|++++|.+++ .
T Consensus        88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence            7776 456667777888888888888876544 567788888888888888887778888888888888888888765 3


Q ss_pred             CCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccc
Q 041908          630 IPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYM  709 (883)
Q Consensus       630 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  709 (883)
                      +|..+..                                                                     +++|
T Consensus       167 ~~~~~~~---------------------------------------------------------------------l~~L  177 (306)
T 2z66_A          167 LPDIFTE---------------------------------------------------------------------LRNL  177 (306)
T ss_dssp             ECSCCTT---------------------------------------------------------------------CTTC
T ss_pred             chhHHhh---------------------------------------------------------------------CcCC
Confidence            4433321                                                                     4678


Q ss_pred             cEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCC-CCcEEEccC
Q 041908          710 TGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELN-YLAIFNVSY  788 (883)
Q Consensus       710 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~-~L~~l~ls~  788 (883)
                      +.|||++|++++..|..++.+++|++|+|++|++++..+..++.+++|+.|||++|++++.+|..+..++ +|++|++++
T Consensus       178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~  257 (306)
T 2z66_A          178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ  257 (306)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred             CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccC
Confidence            8999999999988888999999999999999999988888899999999999999999999999999884 899999999


Q ss_pred             CcCcccCCCC
Q 041908          789 NDLSGPTPNT  798 (883)
Q Consensus       789 N~l~g~ip~~  798 (883)
                      |+++|.++..
T Consensus       258 N~~~~~c~~~  267 (306)
T 2z66_A          258 NDFACTCEHQ  267 (306)
T ss_dssp             CCEECSGGGH
T ss_pred             CCeecccChH
Confidence            9999876643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=5.4e-29  Score=273.33  Aligned_cols=207  Identities=18%  Similarity=0.106  Sum_probs=105.8

Q ss_pred             cCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEE
Q 041908          396 TVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHIL  475 (883)
Q Consensus       396 l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  475 (883)
                      ++.....+.+++.++ .+|..+.   ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            333444555666555 5554331   244444444444443333334444444444444444444444444444444444


Q ss_pred             EccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccc-cccccCCCcCeeecccCc-
Q 041908          476 DVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLE-FSFNHSSSLWHLFLHNNS-  553 (883)
Q Consensus       476 ~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~L~~L~L~~n~-  553 (883)
                      ++++|.++                        +..+..+.++++|++|++++|++.+..+ ..+..+++|++|++++|. 
T Consensus       106 ~Ls~n~l~------------------------~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~  161 (353)
T 2z80_A          106 DLSYNYLS------------------------NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT  161 (353)
T ss_dssp             ECCSSCCS------------------------SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS
T ss_pred             ECCCCcCC------------------------cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcc
Confidence            44444444                        3333334444444444444444443222 244455555555555552 


Q ss_pred             cccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCC
Q 041908          554 LNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSI  630 (883)
Q Consensus       554 l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~  630 (883)
                      +++..+..+.++++|++|++++|++++..|..+..+++|++|++++|++....+..+..+++|+.|++++|++++..
T Consensus       162 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~  238 (353)
T 2z80_A          162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH  238 (353)
T ss_dssp             CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred             ccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccc
Confidence            44333455666666666666666666666666666667777777777665322223344666777777777666443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=1.3e-30  Score=307.85  Aligned_cols=249  Identities=13%  Similarity=0.055  Sum_probs=112.3

Q ss_pred             CCCCcEEeCCCCcCCCC----CCccccccCcccEEeccCCcccC----ccchhHhhCCCCCCEEEccCcccCCcCccccc
Q 041908          372 LPELVYLDMSQNSFEGS----IPPSMGYTVRLLFLDLSSNNFSG----ELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYM  443 (883)
Q Consensus       372 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~----~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  443 (883)
                      +++|++|++++|.+++.    ++.....+++|++|++++|.+++    .++ .++..+++|+.|++++|.+.+ ++..+.
T Consensus       163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~-l~~~~~  240 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE-TIARNCRSLVSVKVGDFEILE-LVGFFK  240 (592)
T ss_dssp             CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH-HHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred             CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH-HHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence            45555555555554433    22233344555555555555541    111 112344555555555554443 334444


Q ss_pred             CCCCCCeEEccCcccC---ccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCC-ccccCCCc
Q 041908          444 SMTQLAWLYLNDNQFT---GRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVS-VPLSNLQV  519 (883)
Q Consensus       444 ~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~  519 (883)
                      .+++|++|+++.....   +..+..+..+++|+.|+++++.. +.+|..+..+++|++|++++|.+++... ..+..+++
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~  319 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN  319 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence            4555555555432211   12223344445555555555322 2444555555555555555555433222 22344555


Q ss_pred             ccEEecCCCcCcCccccccccCCCcCeeeccc-----------Ccccccc-chhhhcCCCCCEEeccCCcCCccCCcccc
Q 041908          520 ARILDISENKLYGPLEFSFNHSSSLWHLFLHN-----------NSLNGSI-PSALFQSSQLMTLDLRDNEFSGNIPPLIN  587 (883)
Q Consensus       520 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~-----------n~l~~~~-p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~  587 (883)
                      |+.|+++++...+.++.....+++|++|++++           |.+++.. +.....+++|++|+++.|++++..+..++
T Consensus       320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~  399 (592)
T 3ogk_B          320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG  399 (592)
T ss_dssp             CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred             CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence            55555552211122222224445555555552           3343321 22233455555555555555554444443


Q ss_pred             C-CCCCcEEEcc----CCccccc-----CchhhcCCCCCCEEEcCC
Q 041908          588 E-DSNLRALLLR----GNNLQGN-----IPQQLCHLRKIAIVDISY  623 (883)
Q Consensus       588 ~-l~~L~~L~L~----~N~l~g~-----~p~~l~~l~~L~~L~ls~  623 (883)
                      . +++|+.|+++    .|.+++.     ++..+..+++|+.|++++
T Consensus       400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~  445 (592)
T 3ogk_B          400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL  445 (592)
T ss_dssp             HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred             hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence            3 5555555553    4444432     233344455555555543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=1.9e-28  Score=265.33  Aligned_cols=226  Identities=19%  Similarity=0.259  Sum_probs=159.9

Q ss_pred             CCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeec
Q 041908          470 PSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFL  549 (883)
Q Consensus       470 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L  549 (883)
                      +.++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+.++++|++|++++|.+                   
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l-------------------  139 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-------------------  139 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCC-------------------
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcc-------------------
Confidence            45666666666665 45555555666666666666555 4555555555555555555544                   


Q ss_pred             ccCccccccchhhhcCCCCCEEeccCCcCCccCCccc---------cCCCCCcEEEccCCcccccCchhhcCCCCCCEEE
Q 041908          550 HNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLI---------NEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVD  620 (883)
Q Consensus       550 ~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l---------~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~  620 (883)
                           + .+|..+.++++|++|++++|++.+.+|..+         ..+++|++|++++|+++ .+|..+..+++|+.|+
T Consensus       140 -----~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~  212 (328)
T 4fcg_A          140 -----R-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLK  212 (328)
T ss_dssp             -----C-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEE
T ss_pred             -----c-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEE
Confidence                 4 444455555555555555555555555444         34788888888888887 7787888888888888


Q ss_pred             cCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccccc
Q 041908          621 ISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYES  700 (883)
Q Consensus       621 ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  700 (883)
                      +++|++++ +|..+..                                                                
T Consensus       213 L~~N~l~~-l~~~l~~----------------------------------------------------------------  227 (328)
T 4fcg_A          213 IRNSPLSA-LGPAIHH----------------------------------------------------------------  227 (328)
T ss_dssp             EESSCCCC-CCGGGGG----------------------------------------------------------------
T ss_pred             ccCCCCCc-Cchhhcc----------------------------------------------------------------
Confidence            88888874 4433321                                                                


Q ss_pred             ccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCC
Q 041908          701 YKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNY  780 (883)
Q Consensus       701 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~  780 (883)
                           +++|+.|||++|++.+.+|..++.+++|++|+|++|++.+.+|..++++++|+.|||++|++.|.+|..+.++++
T Consensus       228 -----l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~  302 (328)
T 4fcg_A          228 -----LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA  302 (328)
T ss_dssp             -----CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred             -----CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence                 467788888888888888888888999999999998888889988999999999999999999999999999999


Q ss_pred             CcEEEccCCcCcc
Q 041908          781 LAIFNVSYNDLSG  793 (883)
Q Consensus       781 L~~l~ls~N~l~g  793 (883)
                      |+.++++.|.+..
T Consensus       303 L~~l~l~~~~~~~  315 (328)
T 4fcg_A          303 NCIILVPPHLQAQ  315 (328)
T ss_dssp             TCEEECCGGGSCC
T ss_pred             ceEEeCCHHHHHH
Confidence            9998888765543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=3.4e-29  Score=274.92  Aligned_cols=281  Identities=17%  Similarity=0.178  Sum_probs=235.5

Q ss_pred             CCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEE
Q 041908          444 SMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARIL  523 (883)
Q Consensus       444 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  523 (883)
                      .++.....+.+++.++ .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|++++..+..+.++++|++|
T Consensus        29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            3445556777888877 4555443  589999999999987666689999999999999999998888889999999999


Q ss_pred             ecCCCcCcCccccccccCCCcCeeecccCccccccch--hhhcCCCCCEEeccCC-cCCccCCccccCCCCCcEEEccCC
Q 041908          524 DISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPS--ALFQSSQLMTLDLRDN-EFSGNIPPLINEDSNLRALLLRGN  600 (883)
Q Consensus       524 ~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~--~~~~~~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~N  600 (883)
                      ++++|++++..+..+..+++|++|++++|++++ +|.  .+..+++|++|++++| .+++..|..++.+++|++|++++|
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            999999998777778999999999999999984 554  7889999999999999 477777788999999999999999


Q ss_pred             cccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCC
Q 041908          601 NLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGED  680 (883)
Q Consensus       601 ~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  680 (883)
                      ++++..|..+..+++|+.|++++|+++ .+|..+.                                             
T Consensus       185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~---------------------------------------------  218 (353)
T 2z80_A          185 DLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFV---------------------------------------------  218 (353)
T ss_dssp             TCCEECTTTTTTCSEEEEEEEECSCST-THHHHHH---------------------------------------------
T ss_pred             CcCccCHHHHhccccCCeecCCCCccc-cchhhhh---------------------------------------------
Confidence            999999999999999999999999874 2222110                                             


Q ss_pred             hhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCccccc---ccccCCeeeCCCCcCCc----CCCccccC
Q 041908          681 NRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIG---YLQELHALNLSHNHLSG----SIPRSFSN  753 (883)
Q Consensus       681 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~---~l~~L~~L~Ls~N~l~g----~ip~~l~~  753 (883)
                                             ..+++|+.|||++|++++..+..+.   ....++.++|++|.+++    .+|..++.
T Consensus       219 -----------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~  275 (353)
T 2z80_A          219 -----------------------DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ  275 (353)
T ss_dssp             -----------------------HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHT
T ss_pred             -----------------------hhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhc
Confidence                                   1156789999999999987665543   45678889999999887    47889999


Q ss_pred             cCCCCEEECCCCcccccCCcc-ccCCCCCcEEEccCCcCcccCCCC
Q 041908          754 LKMIESMDLSYNKLRGQIPLE-LSELNYLAIFNVSYNDLSGPTPNT  798 (883)
Q Consensus       754 l~~L~~LdLs~N~Lsg~ip~~-l~~l~~L~~l~ls~N~l~g~ip~~  798 (883)
                      +++|+.|||++|+++ .+|.. +.++++|++|++++|+++|.+|.-
T Consensus       276 l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l  320 (353)
T 2z80_A          276 ISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  320 (353)
T ss_dssp             CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred             ccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCCc
Confidence            999999999999999 56665 589999999999999999988843

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=7.8e-30  Score=301.05  Aligned_cols=407  Identities=15%  Similarity=0.111  Sum_probs=203.5

Q ss_pred             hhhcCCCCCCEEEccCCcC---CCCCCcccc------------CCCCCCEEEccCCccccccChhhhcC-CC-CCCEEec
Q 041908          173 ARICELKNLVELNLSWNKL---DGSLPQCLS------------NLTYLRVLDLTSNQLSGNLPISVFAN-LT-SLEYLSL  235 (883)
Q Consensus       173 ~~l~~l~~L~~L~Ls~n~l---~~~~p~~l~------------~l~~L~~L~Ls~n~l~~~ip~~~~~~-l~-~L~~L~L  235 (883)
                      ..+..+++|++|+|+++..   .+.+|..++            .+++|++|+|++|.+++..+ ..+.. ++ +|++|++
T Consensus        67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~-~~l~~~~~~~L~~L~L  145 (592)
T 3ogk_B           67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDL-DRLAKARADDLETLKL  145 (592)
T ss_dssp             HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHH-HHHHHHHGGGCCEEEE
T ss_pred             HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHH-HHHHHhccccCcEEEC
Confidence            4456788899999988642   123443333            67888888888887775544 44544 33 4888888


Q ss_pred             cCCc-CccccChHhhhcCCCCcEEEccCcccccCCCCC-----CCCccceEEEcccCcCC----ccCchhhhcCCCCCEE
Q 041908          236 SGNN-FQGSFSLSVLANHSRLEVLQISRLQIETENFPW-----LPRFQLKVLNLRRCNIS----GTIPSFLQYQYDLRYI  305 (883)
Q Consensus       236 ~~n~-l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~-----~~~~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L  305 (883)
                      ++|. ++...-.....++++|++|++++|.+......+     ..+++|++|++++|.++    +.++..+..+++|++|
T Consensus       146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L  225 (592)
T 3ogk_B          146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV  225 (592)
T ss_dssp             ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred             cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence            8776 221111122346777777777777654332111     12234555555555544    1223333444555555


Q ss_pred             EccCCCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcC
Q 041908          306 DLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSF  385 (883)
Q Consensus       306 ~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l  385 (883)
                      ++++|.+.+ +|..+ ..+++|+.|+++.......                    .+..+..+. .+++|+.|+++++..
T Consensus       226 ~L~~~~~~~-l~~~~-~~~~~L~~L~l~~~~~~~~--------------------~~~~~~~l~-~~~~L~~L~l~~~~~  282 (592)
T 3ogk_B          226 KVGDFEILE-LVGFF-KAAANLEEFCGGSLNEDIG--------------------MPEKYMNLV-FPRKLCRLGLSYMGP  282 (592)
T ss_dssp             ECSSCBGGG-GHHHH-HHCTTCCEEEECBCCCCTT--------------------CTTSSSCCC-CCTTCCEEEETTCCT
T ss_pred             eccCccHHH-HHHHH-hhhhHHHhhcccccccccc--------------------hHHHHHHhh-ccccccccCccccch
Confidence            555554442 33222 2444444444443111000                    011122222 255666666665432


Q ss_pred             CCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccC----------
Q 041908          386 EGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLND----------  455 (883)
Q Consensus       386 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~----------  455 (883)
                       +.+|..+..+++|++|++++|.+++.....++..+++|+.|+++++...+.++.....+++|++|++++          
T Consensus       283 -~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~  361 (592)
T 3ogk_B          283 -NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE  361 (592)
T ss_dssp             -TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSST
T ss_pred             -hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccc
Confidence             245555666666777777666655444434445666666666662222222222224456666666662          


Q ss_pred             -cccCcc-ccccccCCCCCCEEEccCCccCCCcchhhhC-CCCCCEEECC----CCcCCCC-----CCccccCCCcccEE
Q 041908          456 -NQFTGR-LEEGLLNAPSLHILDVSNNMLSGQLPHWVGN-FSNLDVLLMS----RNSLEGD-----VSVPLSNLQVARIL  523 (883)
Q Consensus       456 -n~l~~~-~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~-l~~L~~L~L~----~n~l~~~-----~~~~l~~l~~L~~L  523 (883)
                       +.+++. ++.....+++|++|+++.|.+++..+..+.. +++|++|+++    .|.+++.     ++..+.++++|+.|
T Consensus       362 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L  441 (592)
T 3ogk_B          362 EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF  441 (592)
T ss_dssp             TCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred             cCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEE
Confidence             344432 1222334566666666666666555555544 6666666664    4444432     12223445555555


Q ss_pred             ecCCCc--CcCcccccc-ccCCCcCeeecccCccccc-cchhhhcCCCCCEEeccCCcCCcc-CCccccCCCCCcEEEcc
Q 041908          524 DISENK--LYGPLEFSF-NHSSSLWHLFLHNNSLNGS-IPSALFQSSQLMTLDLRDNEFSGN-IPPLINEDSNLRALLLR  598 (883)
Q Consensus       524 ~Ls~n~--l~~~~~~~~-~~~~~L~~L~L~~n~l~~~-~p~~~~~~~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~  598 (883)
                      ++++|.  +++..+..+ ..+++|++|++++|++++. ++..+..+++|++|++++|.+++. ++.....+++|++|+++
T Consensus       442 ~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls  521 (592)
T 3ogk_B          442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQ  521 (592)
T ss_dssp             EEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEE
T ss_pred             EEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECc
Confidence            554332  333333222 2244555555555555432 233344455555555555555433 22223345555555555


Q ss_pred             CCcccc
Q 041908          599 GNNLQG  604 (883)
Q Consensus       599 ~N~l~g  604 (883)
                      +|++++
T Consensus       522 ~n~it~  527 (592)
T 3ogk_B          522 GYRASM  527 (592)
T ss_dssp             SCBCCT
T ss_pred             CCcCCH
Confidence            555543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=2.8e-27  Score=268.77  Aligned_cols=250  Identities=20%  Similarity=0.163  Sum_probs=177.1

Q ss_pred             EEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCc
Q 041908          474 ILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNS  553 (883)
Q Consensus       474 ~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~  553 (883)
                      .++.++..++ .+|..+.  +++++|++++|++++..+..|.++++|+.|++++|++++..+..|..+++|++|+|++|+
T Consensus        58 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           58 KVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            4444444444 3343222  355555555555555555555556666666666666655555556666666666666666


Q ss_pred             cccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCc-hhhcCCCCCCEEEcCCCcCCCCCCc
Q 041908          554 LNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIP-QQLCHLRKIAIVDISYNLLDGSIPS  632 (883)
Q Consensus       554 l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p-~~l~~l~~L~~L~ls~N~l~~~~p~  632 (883)
                      +++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|+..+.++ ..+..+++|+.|++++|++++. |.
T Consensus       135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~  213 (452)
T 3zyi_A          135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PN  213 (452)
T ss_dssp             CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CC
T ss_pred             CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-cc
Confidence            664444556666777777777777776555667777777777777744433444 3577788888888888877632 21


Q ss_pred             ccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEE
Q 041908          633 CFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGL  712 (883)
Q Consensus       633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  712 (883)
                       +                                                                     ..+++|+.|
T Consensus       214 -~---------------------------------------------------------------------~~l~~L~~L  223 (452)
T 3zyi_A          214 -L---------------------------------------------------------------------TPLVGLEEL  223 (452)
T ss_dssp             -C---------------------------------------------------------------------TTCTTCCEE
T ss_pred             -c---------------------------------------------------------------------cccccccEE
Confidence             1                                                                     115678899


Q ss_pred             EccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCc
Q 041908          713 DLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLS  792 (883)
Q Consensus       713 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~  792 (883)
                      ||++|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|||++|+|++..+..+..+++|+.|++++|++.
T Consensus       224 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             ECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             ECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            99999999888999999999999999999999999999999999999999999999888888899999999999999998


Q ss_pred             ccCCC
Q 041908          793 GPTPN  797 (883)
Q Consensus       793 g~ip~  797 (883)
                      |.+..
T Consensus       304 CdC~~  308 (452)
T 3zyi_A          304 CDCDI  308 (452)
T ss_dssp             CSTTT
T ss_pred             CCCCc
Confidence            87653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.1e-27  Score=257.42  Aligned_cols=249  Identities=20%  Similarity=0.189  Sum_probs=166.0

Q ss_pred             cEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCc--CcccccCCCCCCeEEc
Q 041908          376 VYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQ--IFPKYMSMTQLAWLYL  453 (883)
Q Consensus       376 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L  453 (883)
                      +.++.+++.++ .+|..+.  ++|++|++++|.++ .+|..++..+++|++|++++|.++..  .+..+..+++|++|++
T Consensus        10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            34555555554 3443332  45666666666665 55555555566666666666665522  2344455667777777


Q ss_pred             cCcccCccccccccCCCCCCEEEccCCccCCCcc-hhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcC
Q 041908          454 NDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLP-HWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYG  532 (883)
Q Consensus       454 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  532 (883)
                      ++|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus        86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A           86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence            777766 345556677777777777777765443 467777777777777777777777777777777777777777765


Q ss_pred             -ccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhc
Q 041908          533 -PLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLC  611 (883)
Q Consensus       533 -~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~  611 (883)
                       ..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+.
T Consensus       165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  244 (306)
T 2z66_A          165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ  244 (306)
T ss_dssp             GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred             ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence             4566677777777777777777766666777777777777777777766666677777777777777777777777777


Q ss_pred             CCC-CCCEEEcCCCcCCCC
Q 041908          612 HLR-KIAIVDISYNLLDGS  629 (883)
Q Consensus       612 ~l~-~L~~L~ls~N~l~~~  629 (883)
                      .++ +|+.|++++|++++.
T Consensus       245 ~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          245 HFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CCCTTCCEEECTTCCEECS
T ss_pred             hhhccCCEEEccCCCeecc
Confidence            663 677777777776543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=3.7e-27  Score=266.79  Aligned_cols=251  Identities=22%  Similarity=0.193  Sum_probs=186.1

Q ss_pred             CEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccC
Q 041908          473 HILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNN  552 (883)
Q Consensus       473 ~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n  552 (883)
                      +.++.++..++ .+|..+.  ++++.|++++|++++..+..|.++++|++|++++|.+.+..+..|..+++|++|+|++|
T Consensus        46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            44555555554 4444332  45666666666666665666666666666666666666666666666677777777777


Q ss_pred             ccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCc-hhhcCCCCCCEEEcCCCcCCCCCC
Q 041908          553 SLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIP-QQLCHLRKIAIVDISYNLLDGSIP  631 (883)
Q Consensus       553 ~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p-~~l~~l~~L~~L~ls~N~l~~~~p  631 (883)
                      ++++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|+..+.++ ..+..+++|+.|++++|+++ .+|
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~  201 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP  201 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc
Confidence            7765445566777777777777777776666677777788888887754444444 46778888888888888776 223


Q ss_pred             cccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccE
Q 041908          632 SCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTG  711 (883)
Q Consensus       632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  711 (883)
                      . +                                                                     ..+++|+.
T Consensus       202 ~-~---------------------------------------------------------------------~~l~~L~~  211 (440)
T 3zyj_A          202 N-L---------------------------------------------------------------------TPLIKLDE  211 (440)
T ss_dssp             C-C---------------------------------------------------------------------TTCSSCCE
T ss_pred             c-c---------------------------------------------------------------------CCCcccCE
Confidence            1 1                                                                     11567889


Q ss_pred             EEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcC
Q 041908          712 LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDL  791 (883)
Q Consensus       712 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l  791 (883)
                      |||++|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+.|++++|++
T Consensus       212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             EECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            99999999988899999999999999999999999999999999999999999999988888889999999999999999


Q ss_pred             cccCCC
Q 041908          792 SGPTPN  797 (883)
Q Consensus       792 ~g~ip~  797 (883)
                      .|.+..
T Consensus       292 ~CdC~l  297 (440)
T 3zyj_A          292 NCNCDI  297 (440)
T ss_dssp             ECSSTT
T ss_pred             cCCCCc
Confidence            887653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=4.4e-29  Score=269.40  Aligned_cols=268  Identities=21%  Similarity=0.194  Sum_probs=217.1

Q ss_pred             CCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCC
Q 041908          448 LAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISE  527 (883)
Q Consensus       448 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  527 (883)
                      ++..+++.+.+...+...+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+  +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            4555666666665555556667788888888888887777888888888888888888876554  78888888999988


Q ss_pred             CcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCc
Q 041908          528 NKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIP  607 (883)
Q Consensus       528 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p  607 (883)
                      |++++..     ..++|++|++++|++++..+..   +++|++|++++|++++..|..++.+++|++|++++|++++..|
T Consensus        90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           90 NYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             SEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred             Ccccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence            8887543     2368999999999988665443   5789999999999998888888899999999999999998777


Q ss_pred             hhhc-CCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcc
Q 041908          608 QQLC-HLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQ  686 (883)
Q Consensus       608 ~~l~-~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  686 (883)
                      ..+. .+++|+.|++++|.+++. |..                                                     
T Consensus       162 ~~~~~~l~~L~~L~L~~N~l~~~-~~~-----------------------------------------------------  187 (317)
T 3o53_A          162 AELAASSDTLEHLNLQYNFIYDV-KGQ-----------------------------------------------------  187 (317)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEE-ECC-----------------------------------------------------
T ss_pred             HHHhhccCcCCEEECCCCcCccc-ccc-----------------------------------------------------
Confidence            7764 789999999999988642 110                                                     


Q ss_pred             eeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCc
Q 041908          687 RVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNK  766 (883)
Q Consensus       687 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~  766 (883)
                                       ..+++|+.|||++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.||+++|+
T Consensus       188 -----------------~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          188 -----------------VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             -----------------CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCC
T ss_pred             -----------------cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCC
Confidence                             015678999999999995 4556999999999999999999 578889999999999999999


Q ss_pred             cc-ccCCccccCCCCCcEEEcc-CCcCcccCCCC
Q 041908          767 LR-GQIPLELSELNYLAIFNVS-YNDLSGPTPNT  798 (883)
Q Consensus       767 Ls-g~ip~~l~~l~~L~~l~ls-~N~l~g~ip~~  798 (883)
                      ++ +.+|..+..+++|+.++++ .+.++|..|..
T Consensus       249 ~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~  282 (317)
T 3o53_A          249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE  282 (317)
T ss_dssp             CBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred             ccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence            99 8888899999999999999 45677766543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=9.2e-28  Score=255.13  Aligned_cols=230  Identities=20%  Similarity=0.168  Sum_probs=122.0

Q ss_pred             CEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccC
Q 041908          473 HILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNN  552 (883)
Q Consensus       473 ~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n  552 (883)
                      +.++.+++.++ .+|..+  .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.                
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----------------   74 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA----------------   74 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT----------------
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh----------------
Confidence            45555555555 334322  34555555555555554444455555555555555555444444                


Q ss_pred             ccccccchhhhcCCCCCEEeccCCc-CCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCC
Q 041908          553 SLNGSIPSALFQSSQLMTLDLRDNE-FSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIP  631 (883)
Q Consensus       553 ~l~~~~p~~~~~~~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p  631 (883)
                              .+..+++|++|++++|+ +++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+
T Consensus        75 --------~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  146 (285)
T 1ozn_A           75 --------AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD  146 (285)
T ss_dssp             --------TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             --------hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence                    44444555555555554 443334445555555555555555554444555555555555555555543322


Q ss_pred             cccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccE
Q 041908          632 SCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTG  711 (883)
Q Consensus       632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  711 (883)
                      ..+..                                                                     +++|+.
T Consensus       147 ~~~~~---------------------------------------------------------------------l~~L~~  157 (285)
T 1ozn_A          147 DTFRD---------------------------------------------------------------------LGNLTH  157 (285)
T ss_dssp             TTTTT---------------------------------------------------------------------CTTCCE
T ss_pred             hHhcc---------------------------------------------------------------------CCCccE
Confidence            22211                                                                     344555


Q ss_pred             EEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcC
Q 041908          712 LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDL  791 (883)
Q Consensus       712 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l  791 (883)
                      |+|++|++++..+..+..+++|+.|+|++|.+++..|..|+++++|+.||+++|++++..|..+..+++|+.|++++|++
T Consensus       158 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             EECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence            66666666544444556666666666666666665566666666666666666666655445556666666666666666


Q ss_pred             cccCCCC
Q 041908          792 SGPTPNT  798 (883)
Q Consensus       792 ~g~ip~~  798 (883)
                      .|.++..
T Consensus       238 ~c~~~~~  244 (285)
T 1ozn_A          238 VCDCRAR  244 (285)
T ss_dssp             ECSGGGH
T ss_pred             cCCCCcH
Confidence            6555543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=1.9e-29  Score=271.64  Aligned_cols=251  Identities=20%  Similarity=0.231  Sum_probs=162.0

Q ss_pred             cCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCcc-CCCcchhhh-------CCCCCCEEECCCCcCCCCCCccc
Q 041908          443 MSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNML-SGQLPHWVG-------NFSNLDVLLMSRNSLEGDVSVPL  514 (883)
Q Consensus       443 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l-~~~~p~~~~-------~l~~L~~L~L~~n~l~~~~~~~l  514 (883)
                      +..++|+++++++|.+  .+|..+...  |+.|++++|.+ .+.+|..+.       ++++|++|++++|++++.+|..+
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            3445566666666666  444433322  55555665555 223444333       44555555555555554444433


Q ss_pred             cCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcC-----CCCCEEeccCCcCCccCCccccCC
Q 041908          515 SNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS-----SQLMTLDLRDNEFSGNIPPLINED  589 (883)
Q Consensus       515 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~-----~~L~~L~Ls~N~l~~~~p~~l~~l  589 (883)
                                            .+..+++|++|++++|++++. |..+..+     ++|++|++++|++++..|..++.+
T Consensus       116 ----------------------~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A          116 ----------------------LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             ----------------------SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             ----------------------HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence                                  004555555555666655544 5555554     677777777777777666777777


Q ss_pred             CCCcEEEccCCccccc--Cchhh--cCCCCCCEEEcCCCcCCCC--CCcccccccccccCCCCCCCcccccccccccccc
Q 041908          590 SNLRALLLRGNNLQGN--IPQQL--CHLRKIAIVDISYNLLDGS--IPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPA  663 (883)
Q Consensus       590 ~~L~~L~L~~N~l~g~--~p~~l--~~l~~L~~L~ls~N~l~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  663 (883)
                      ++|++|++++|++.|.  +|..+  ..+++|+.|++++|++++.  ++..+.                            
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~----------------------------  224 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA----------------------------  224 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH----------------------------
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH----------------------------
Confidence            7888888888877665  23344  6778888888888877521  010000                            


Q ss_pred             hhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCc-ccccccccCCeeeCCCCc
Q 041908          664 ISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIP-SAIGYLQELHALNLSHNH  742 (883)
Q Consensus       664 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~Ls~N~  742 (883)
                                                              ..+++|+.|||++|++++.+| ..+..+++|++|+|++|+
T Consensus       225 ----------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~  264 (312)
T 1wwl_A          225 ----------------------------------------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG  264 (312)
T ss_dssp             ----------------------------------------HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred             ----------------------------------------hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence                                                    114677888888888887775 456677888888888888


Q ss_pred             CCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcc
Q 041908          743 LSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSG  793 (883)
Q Consensus       743 l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g  793 (883)
                      |+ .+|..+.  ++|++|||++|++++. |. +..+++|++|++++|++++
T Consensus       265 l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          265 LK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             cC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            88 7777776  7888888888888876 55 7888888888888888876

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.3e-27  Score=253.89  Aligned_cols=253  Identities=20%  Similarity=0.205  Sum_probs=181.1

Q ss_pred             CeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCC
Q 041908          449 AWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISEN  528 (883)
Q Consensus       449 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  528 (883)
                      +.++.+++.++. +|..+  .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++|
T Consensus        14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            678899988884 45443  578999999999999877788999999999999999999888999999999999999999


Q ss_pred             c-CcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCc
Q 041908          529 K-LYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIP  607 (883)
Q Consensus       529 ~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p  607 (883)
                      . +.+..+..+..+++|++|++++|.+++..|..+.++++|++|++++|++++..+..++.+++|++|++++|++++..+
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            7 666556666666666666666666665555555555556666665555554444444455555555555554443222


Q ss_pred             hhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcce
Q 041908          608 QQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQR  687 (883)
Q Consensus       608 ~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  687 (883)
                      ..+..                                                                           
T Consensus       171 ~~~~~---------------------------------------------------------------------------  175 (285)
T 1ozn_A          171 RAFRG---------------------------------------------------------------------------  175 (285)
T ss_dssp             TTTTT---------------------------------------------------------------------------
T ss_pred             HHhcC---------------------------------------------------------------------------
Confidence            22222                                                                           


Q ss_pred             eEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcc
Q 041908          688 VEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKL  767 (883)
Q Consensus       688 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~L  767 (883)
                                        +++|+.|+|++|++++..|..++.+++|+.|+|++|++++..|..++.+++|+.|++++|++
T Consensus       176 ------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          176 ------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             ------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             ------------------ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence                              34566777777777777788888888888888888888877777788888888888888888


Q ss_pred             cccCCccccCCCCCcEEEccCCcCcccCCCC
Q 041908          768 RGQIPLELSELNYLAIFNVSYNDLSGPTPNT  798 (883)
Q Consensus       768 sg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~  798 (883)
                      ++..+.. .-...++.+..+.|.+.|..|..
T Consensus       238 ~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          238 VCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             ECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             cCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence            7655432 11133455567788888888864

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=9.8e-29  Score=266.02  Aligned_cols=253  Identities=20%  Similarity=0.199  Sum_probs=179.0

Q ss_pred             hhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccC-cccccccc-------CCCCCCEEEccCCccCCCcchh
Q 041908          418 LTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFT-GRLEEGLL-------NAPSLHILDVSNNMLSGQLPHW  489 (883)
Q Consensus       418 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~ls~n~l~~~~p~~  489 (883)
                      +.+.++|+.+++++|.+  .+|..+...  |+.|++++|++. ..+|..+.       .+++|++|++++|.+++.+|..
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            34567899999999999  667766544  999999999994 55666555       7899999999999999999987


Q ss_pred             h--hCCCCCCEEECCCCcCCCCCCccccCC-----CcccEEecCCCcCcCccccccccCCCcCeeecccCcccccc--ch
Q 041908          490 V--GNFSNLDVLLMSRNSLEGDVSVPLSNL-----QVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSI--PS  560 (883)
Q Consensus       490 ~--~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~--p~  560 (883)
                      +  ..+++|++|++++|++++. |..+..+     ++|++|++++|++.+..+..+..+++|++|++++|++.+.+  |.
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence            6  8899999999999999987 7666655     56666666666665555555555555555555555554331  22


Q ss_pred             hhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccc--cCc-hhhcCCCCCCEEEcCCCcCCCCCCcccccc
Q 041908          561 ALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQG--NIP-QQLCHLRKIAIVDISYNLLDGSIPSCFTNI  637 (883)
Q Consensus       561 ~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g--~~p-~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~  637 (883)
                      .+                      .++.+++|++|++++|++++  .++ ..+..+++|+.||+++|++++.+|....  
T Consensus       194 ~~----------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--  249 (312)
T 1wwl_A          194 AL----------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC--  249 (312)
T ss_dssp             HS----------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC--
T ss_pred             HH----------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh--
Confidence            22                      11455556666666665552  222 2335667777777777777765542110  


Q ss_pred             cccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCC
Q 041908          638 WPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSN  717 (883)
Q Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N  717 (883)
                                                                                        ..+++|+.|||++|
T Consensus       250 ------------------------------------------------------------------~~l~~L~~L~Ls~N  263 (312)
T 1wwl_A          250 ------------------------------------------------------------------DWPSQLNSLNLSFT  263 (312)
T ss_dssp             ------------------------------------------------------------------CCCTTCCEEECTTS
T ss_pred             ------------------------------------------------------------------hhcCCCCEEECCCC
Confidence                                                                              01456788888888


Q ss_pred             cCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCccccc
Q 041908          718 ELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQ  770 (883)
Q Consensus       718 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~  770 (883)
                      +|+ .+|..+.  ++|++|+|++|+|++. |. +..+++|+.|||++|++++.
T Consensus       264 ~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          264 GLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             ccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            888 7777776  7888888888888866 65 88888888889988888753

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=7.8e-28  Score=274.70  Aligned_cols=236  Identities=22%  Similarity=0.202  Sum_probs=174.0

Q ss_pred             CCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeee
Q 041908          469 APSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLF  548 (883)
Q Consensus       469 l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~  548 (883)
                      +++|++|++++|.+++..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.+++..+     .++|+.|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            3467777777777777667777777777777777777776554  7777777777777777765433     25778888


Q ss_pred             cccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhc-CCCCCCEEEcCCCcCC
Q 041908          549 LHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLC-HLRKIAIVDISYNLLD  627 (883)
Q Consensus       549 L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~-~l~~L~~L~ls~N~l~  627 (883)
                      +++|.+++..+.   .+++|+.|++++|.+++..|..++.+++|++|+|++|.+++.+|..+. .+++|+.|++++|.++
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            888887765543   346788888888888877777788888888888888888877777775 6788888888888776


Q ss_pred             CCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccc
Q 041908          628 GSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLE  707 (883)
Q Consensus       628 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  707 (883)
                      +..+.                                                                       ..++
T Consensus       183 ~~~~~-----------------------------------------------------------------------~~l~  191 (487)
T 3oja_A          183 DVKGQ-----------------------------------------------------------------------VVFA  191 (487)
T ss_dssp             EEECC-----------------------------------------------------------------------CCCT
T ss_pred             ccccc-----------------------------------------------------------------------ccCC
Confidence            43111                                                                       0145


Q ss_pred             cccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCccc-ccCCccccCCCCCcEEEc
Q 041908          708 YMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLR-GQIPLELSELNYLAIFNV  786 (883)
Q Consensus       708 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Ls-g~ip~~l~~l~~L~~l~l  786 (883)
                      +|+.|||++|+|++.+| .++.+++|+.|+|++|.+++ +|..++.+++|+.||+++|.++ +.+|..+..++.|+.+++
T Consensus       192 ~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          192 KLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             TCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence            67788888888886444 47788888888888888885 6777888888888888888887 667777777777777777


Q ss_pred             c
Q 041908          787 S  787 (883)
Q Consensus       787 s  787 (883)
                      +
T Consensus       270 ~  270 (487)
T 3oja_A          270 Q  270 (487)
T ss_dssp             H
T ss_pred             c
Confidence            5

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=3.3e-26  Score=258.99  Aligned_cols=229  Identities=26%  Similarity=0.263  Sum_probs=137.8

Q ss_pred             CCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeec
Q 041908          470 PSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFL  549 (883)
Q Consensus       470 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L  549 (883)
                      ++++.|++++|.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            34455555555554444444555555555555555555444444555555555555555555444444555555555555


Q ss_pred             ccCccccccchhhhcCCCCCEEeccCCc-CCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCC
Q 041908          550 HNNSLNGSIPSALFQSSQLMTLDLRDNE-FSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDG  628 (883)
Q Consensus       550 ~~n~l~~~~p~~~~~~~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~  628 (883)
                      ++|++++..+..|.++++|++|++++|+ +....+..+.++++|++|++++|+++ .+| .+..+++|+.|++++|++++
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~  221 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA  221 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence            5555554444455555666666666533 33222334566666666666666665 344 35666677777777776665


Q ss_pred             CCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccccccccccccc
Q 041908          629 SIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEY  708 (883)
Q Consensus       629 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  708 (883)
                      ..|..|..                                                                     +++
T Consensus       222 ~~~~~~~~---------------------------------------------------------------------l~~  232 (440)
T 3zyj_A          222 IRPGSFQG---------------------------------------------------------------------LMH  232 (440)
T ss_dssp             ECTTTTTT---------------------------------------------------------------------CTT
T ss_pred             cChhhhcc---------------------------------------------------------------------Ccc
Confidence            54544322                                                                     356


Q ss_pred             ccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccc
Q 041908          709 MTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRG  769 (883)
Q Consensus       709 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg  769 (883)
                      |+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus       233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            6777777777777777777888888888888888887777777888888888888887753

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=3.1e-26  Score=260.16  Aligned_cols=229  Identities=23%  Similarity=0.235  Sum_probs=141.5

Q ss_pred             CCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeec
Q 041908          470 PSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFL  549 (883)
Q Consensus       470 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L  549 (883)
                      +++++|++++|.+++..|..|.++++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            34555555555555444555555555555555555555555555555555555555555555544445555555555555


Q ss_pred             ccCccccccchhhhcCCCCCEEeccCCc-CCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCC
Q 041908          550 HNNSLNGSIPSALFQSSQLMTLDLRDNE-FSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDG  628 (883)
Q Consensus       550 ~~n~l~~~~p~~~~~~~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~  628 (883)
                      ++|++++..+..|.++++|+.|++++|+ +....+..+..+++|++|++++|++++ +| .+..+++|+.|++++|++++
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSE
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcc
Confidence            5555554444455566666666666533 332223345666666666666666663 33 35666677777777777665


Q ss_pred             CCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccccccccccccc
Q 041908          629 SIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEY  708 (883)
Q Consensus       629 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  708 (883)
                      ..|..|..                                                                     +++
T Consensus       233 ~~~~~~~~---------------------------------------------------------------------l~~  243 (452)
T 3zyi_A          233 IRPGSFHG---------------------------------------------------------------------LSS  243 (452)
T ss_dssp             ECGGGGTT---------------------------------------------------------------------CTT
T ss_pred             cCcccccC---------------------------------------------------------------------ccC
Confidence            54544322                                                                     356


Q ss_pred             ccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccc
Q 041908          709 MTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRG  769 (883)
Q Consensus       709 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg  769 (883)
                      |+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus       244 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             CCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            6777788888877777778888888888888888887777777888888888888887764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=4.9e-26  Score=264.84  Aligned_cols=268  Identities=26%  Similarity=0.337  Sum_probs=154.6

Q ss_pred             CCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEc
Q 041908          374 ELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYL  453 (883)
Q Consensus       374 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  453 (883)
                      +++.|++++|.++ .+|..+.  ++|++|++++|.++ .+|.    .+++|++|++++|++++                 
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-----------------   95 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-----------------   95 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-----------------
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-----------------
Confidence            5777777777776 5565554  56777777777666 4554    24455555555554442                 


Q ss_pred             cCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCc
Q 041908          454 NDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGP  533 (883)
Q Consensus       454 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  533 (883)
                              +|.   .+++|++|++++|.+++ +|.   .+++|++|++++|++++ +|..   +++|++|++++|++++.
T Consensus        96 --------lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l  156 (622)
T 3g06_A           96 --------LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL  156 (622)
T ss_dssp             --------CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC
T ss_pred             --------CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc
Confidence                    222   33445555555555543 222   34455555555555553 2221   25555566665555442


Q ss_pred             cccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCC
Q 041908          534 LEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHL  613 (883)
Q Consensus       534 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l  613 (883)
                       |.   .+.+|+.|++++|.+++ +|   ..+++|+.|++++|++++ +|..   .++|+.|++++|.++ .+|..   +
T Consensus       157 -~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~  220 (622)
T 3g06_A          157 -PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---P  220 (622)
T ss_dssp             -CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---C
T ss_pred             -CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---C
Confidence             21   23456666666666653 44   334667777777777664 4432   356677777777666 34432   3


Q ss_pred             CCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEe
Q 041908          614 RKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFM  693 (883)
Q Consensus       614 ~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  693 (883)
                      ++|+.|++++|++++ +|..                                                            
T Consensus       221 ~~L~~L~Ls~N~L~~-lp~~------------------------------------------------------------  239 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LPVL------------------------------------------------------------  239 (622)
T ss_dssp             TTCCEEECCSSCCSC-CCCC------------------------------------------------------------
T ss_pred             CCCCEEEccCCccCc-CCCC------------------------------------------------------------
Confidence            566677777776653 2210                                                            


Q ss_pred             eccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCc
Q 041908          694 AKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPL  773 (883)
Q Consensus       694 ~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~  773 (883)
                                  +++|+.|+|++|+|+ .+|.   .+++|+.|+|++|+|+ .+|..++++++|+.|||++|++++.+|.
T Consensus       240 ------------l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          240 ------------PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             ------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             ------------CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence                        245666777777776 4554   4566777777777777 5666777777777777777777777766


Q ss_pred             cccCCC
Q 041908          774 ELSELN  779 (883)
Q Consensus       774 ~l~~l~  779 (883)
                      .+..++
T Consensus       303 ~l~~L~  308 (622)
T 3g06_A          303 ALREIT  308 (622)
T ss_dssp             HHHHHH
T ss_pred             HHHhcc
Confidence            655443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=2.8e-25  Score=258.44  Aligned_cols=263  Identities=27%  Similarity=0.273  Sum_probs=210.8

Q ss_pred             CCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECC
Q 041908          423 SLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMS  502 (883)
Q Consensus       423 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~  502 (883)
                      +++.|++++|.++ .+|..+.  ++|++|++++|.++. +|.   .+++|++|++++|.++ .+|.   .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence            4556666666655 3344333  678888888888874 444   4689999999999998 4665   67999999999


Q ss_pred             CCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccC
Q 041908          503 RNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNI  582 (883)
Q Consensus       503 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~  582 (883)
                      +|++++. |.   .+++|+.|++++|++++ +|..   +++|++|++++|++++ +|.   .+++|+.|++++|++++ +
T Consensus       110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l  176 (622)
T 3g06_A          110 SNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-L  176 (622)
T ss_dssp             SCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred             CCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-C
Confidence            9999864 33   56889999999999987 4432   4799999999999984 554   34789999999999995 6


Q ss_pred             CccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCccccccccccccc
Q 041908          583 PPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFP  662 (883)
Q Consensus       583 p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  662 (883)
                      |   ..+++|+.|++++|++++ +|..   +++|+.|++++|.++. +|..                             
T Consensus       177 ~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~~-----------------------------  219 (622)
T 3g06_A          177 P---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL-----------------------------  219 (622)
T ss_dssp             C---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCCC-----------------------------
T ss_pred             c---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCCC-----------------------------
Confidence            6   457899999999999985 5543   4789999999998863 3221                             


Q ss_pred             chhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCc
Q 041908          663 AISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNH  742 (883)
Q Consensus       663 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~  742 (883)
                                                                 +++|+.|+|++|+|++ +|   ..+++|+.|+|++|+
T Consensus       220 -------------------------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~  252 (622)
T 3g06_A          220 -------------------------------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNR  252 (622)
T ss_dssp             -------------------------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSC
T ss_pred             -------------------------------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCC
Confidence                                                       3568999999999995 77   456889999999999


Q ss_pred             CCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCCC
Q 041908          743 LSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNT  798 (883)
Q Consensus       743 l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~  798 (883)
                      |+ .+|.   .+++|+.|+|++|+|+ .+|..+.++++|+.|++++|+++|.+|..
T Consensus       253 L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~  303 (622)
T 3g06_A          253 LT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  303 (622)
T ss_dssp             CS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred             CC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence            99 5666   6789999999999999 78999999999999999999999988864

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=4.4e-27  Score=253.75  Aligned_cols=269  Identities=20%  Similarity=0.186  Sum_probs=157.3

Q ss_pred             ccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEcc
Q 041908          399 LLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVS  478 (883)
Q Consensus       399 L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls  478 (883)
                      ++..+++.+.+. ..+..++..+++|++|++++|.+++..+..+..+++|++|++++|++++..+  +..+++|++|+++
T Consensus        12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            444555555554 4444455555666666666666666555566666666666666666665443  6666677777777


Q ss_pred             CCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCcccccc
Q 041908          479 NNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSI  558 (883)
Q Consensus       479 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~  558 (883)
                      +|.+++. +    ..++|++|++++|++++..+.   .+++|+.|++++|++++..+..+..+++|++|++++|.+++..
T Consensus        89 ~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           89 NNYVQEL-L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             SSEEEEE-E----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred             CCccccc-c----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence            7766532 2    235666666666666644332   2345566666666665555555555555555555555555444


Q ss_pred             chhhh-cCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccc
Q 041908          559 PSALF-QSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNI  637 (883)
Q Consensus       559 p~~~~-~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~  637 (883)
                      +..+. .+++|++|++++|++++. |                        . ...+++|+.|++++|++++. |..+.  
T Consensus       161 ~~~~~~~l~~L~~L~L~~N~l~~~-~------------------------~-~~~l~~L~~L~Ls~N~l~~l-~~~~~--  211 (317)
T 3o53_A          161 FAELAASSDTLEHLNLQYNFIYDV-K------------------------G-QVVFAKLKTLDLSSNKLAFM-GPEFQ--  211 (317)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEE-E------------------------C-CCCCTTCCEEECCSSCCCEE-CGGGG--
T ss_pred             HHHHhhccCcCCEEECCCCcCccc-c------------------------c-ccccccCCEEECCCCcCCcc-hhhhc--
Confidence            44432 445555555555555432 1                        1 11245555555555555422 11111  


Q ss_pred             cccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCC
Q 041908          638 WPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSN  717 (883)
Q Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N  717 (883)
                                                                                         .+++|+.|||++|
T Consensus       212 -------------------------------------------------------------------~l~~L~~L~L~~N  224 (317)
T 3o53_A          212 -------------------------------------------------------------------SAAGVTWISLRNN  224 (317)
T ss_dssp             -------------------------------------------------------------------GGTTCSEEECTTS
T ss_pred             -------------------------------------------------------------------ccCcccEEECcCC
Confidence                                                                               1345666777777


Q ss_pred             cCcccCcccccccccCCeeeCCCCcCC-cCCCccccCcCCCCEEECC-CCcccccCCccc
Q 041908          718 ELTGEIPSAIGYLQELHALNLSHNHLS-GSIPRSFSNLKMIESMDLS-YNKLRGQIPLEL  775 (883)
Q Consensus       718 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~LdLs-~N~Lsg~ip~~l  775 (883)
                      +++ .+|..+..+++|+.|+|++|.++ +.+|..++.++.|+.|+++ .+.++|..|...
T Consensus       225 ~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~  283 (317)
T 3o53_A          225 KLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC  283 (317)
T ss_dssp             CCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCC
T ss_pred             ccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhcc
Confidence            776 46666777777777788877777 6677777777778888877 456677666543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=2.4e-28  Score=288.39  Aligned_cols=232  Identities=17%  Similarity=0.117  Sum_probs=100.4

Q ss_pred             hhhcCCCCCEEEccCCCCcCCc---c-----------hHHHhcCCCCcEEEccccccccccc--CCCCCCCccEEEccCC
Q 041908          295 FLQYQYDLRYIDLSHNNLAGTF---P-----------TWLLQNNTKLEFLFLFNNFLKGLLH--LPDSKRDLLHLVISNN  358 (883)
Q Consensus       295 ~l~~l~~L~~L~Ls~n~l~~~~---p-----------~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~~L~~L~ls~n  358 (883)
                      .+..+++|++|+++++.....+   |           ..+...+++|++|++++|.+++...  +...+++|++|++++|
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            4455666666666665421111   1           1122345555555555555443211  1113455555555555


Q ss_pred             -ccccccchhhhcCCCCCcEEeCCCCcCCCCCCcccc----ccCcccEEeccCCc--ccCccchhHhhCCCCCCEEEccC
Q 041908          359 -NFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMG----YTVRLLFLDLSSNN--FSGELPKQFLTGCVSLAFMNVSH  431 (883)
Q Consensus       359 -~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~----~l~~L~~L~Ls~n~--l~~~ip~~~~~~l~~L~~L~Ls~  431 (883)
                       .+.......+...+++|++|++++|.+++..+..+.    .+++|++|++++|.  +.......+...+++|++|++++
T Consensus       141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~  220 (594)
T 2p1m_B          141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR  220 (594)
T ss_dssp             EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred             CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence             222221222222256666666666665543333222    34466666666654  11111112223345555555555


Q ss_pred             cccCCcCcccccCCCCCCeEEccCc-------ccCccccccccCCCCCCEE-EccCCccCCCcchhhhCCCCCCEEECCC
Q 041908          432 NYFGGQIFPKYMSMTQLAWLYLNDN-------QFTGRLEEGLLNAPSLHIL-DVSNNMLSGQLPHWVGNFSNLDVLLMSR  503 (883)
Q Consensus       432 n~l~~~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~~~l~~L~~L-~ls~n~l~~~~p~~~~~l~~L~~L~L~~  503 (883)
                      |...+.++..+..+++|++|++..+       .+.+ ++..+.++++|+.| .+.+... +.++..+..+++|++|++++
T Consensus       221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~  298 (594)
T 2p1m_B          221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSY  298 (594)
T ss_dssp             TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTT
T ss_pred             CCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccC
Confidence            5211113444445555555553332       2222 22244455555555 2222211 12333333445555555555


Q ss_pred             CcCCCCCC-ccccCCCcccEEecCCC
Q 041908          504 NSLEGDVS-VPLSNLQVARILDISEN  528 (883)
Q Consensus       504 n~l~~~~~-~~l~~l~~L~~L~Ls~n  528 (883)
                      |.+++... ..+..+++|+.|++++|
T Consensus       299 ~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          299 ATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             CCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             CCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            55432211 11234455555555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=7.8e-28  Score=284.09  Aligned_cols=429  Identities=15%  Similarity=0.087  Sum_probs=258.7

Q ss_pred             hhcCCCCCCEEEccCCcCCC---CCCc------------cccCCCCCCEEEccCCccccccChhhhc-CCCCCCEEeccC
Q 041908          174 RICELKNLVELNLSWNKLDG---SLPQ------------CLSNLTYLRVLDLTSNQLSGNLPISVFA-NLTSLEYLSLSG  237 (883)
Q Consensus       174 ~l~~l~~L~~L~Ls~n~l~~---~~p~------------~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~l~~L~~L~L~~  237 (883)
                      .+..+++|++|+++++....   ..|.            ....+++|++|++++|.+++..+ ..+. .+++|++|++++
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~-~~l~~~~~~L~~L~L~~  139 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCL-ELIAKSFKNFKVLVLSS  139 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHH-HHHHHHCTTCCEEEEES
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHH-HHHHHhCCCCcEEeCCC
Confidence            45667888999888875321   1111            12357788888888888776555 3443 688888888888


Q ss_pred             C-cCccccChHhhhcCCCCcEEEccCcccccCCCC-----CCCCccceEEEcccCc--CCcc-CchhhhcCCCCCEEEcc
Q 041908          238 N-NFQGSFSLSVLANHSRLEVLQISRLQIETENFP-----WLPRFQLKVLNLRRCN--ISGT-IPSFLQYQYDLRYIDLS  308 (883)
Q Consensus       238 n-~l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-----~~~~~~L~~L~L~~n~--l~~~-~~~~l~~l~~L~~L~Ls  308 (883)
                      | .++.........++++|++|++++|.+......     ...+++|++|++++|.  +... ++.....+++|++|+++
T Consensus       140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~  219 (594)
T 2p1m_B          140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN  219 (594)
T ss_dssp             CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred             cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence            8 444222223445788888888888776543321     1134467777777665  2211 12223445677777777


Q ss_pred             CCCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEE-eCCCCcCCC
Q 041908          309 HNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYL-DMSQNSFEG  387 (883)
Q Consensus       309 ~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L-~L~~n~l~~  387 (883)
                      +|...+.+|..+ ..+++|+.|+++.+..                ++..+.+.+ ++..+. .+++|+.| .+.+... +
T Consensus       220 ~~~~~~~l~~~~-~~~~~L~~L~l~~~~~----------------~~~~~~~~~-l~~~l~-~~~~L~~Ls~~~~~~~-~  279 (594)
T 2p1m_B          220 RAVPLEKLATLL-QRAPQLEELGTGGYTA----------------EVRPDVYSG-LSVALS-GCKELRCLSGFWDAVP-A  279 (594)
T ss_dssp             TTSCHHHHHHHH-HHCTTCSEEECSBCCC----------------CCCHHHHHH-HHHHHH-TCTTCCEEECCBTCCG-G
T ss_pred             CCCcHHHHHHHH-hcCCcceEcccccccC----------------ccchhhHHH-HHHHHh-cCCCcccccCCcccch-h
Confidence            663222344433 3566666666544321                012222222 333443 36777777 3433322 2


Q ss_pred             CCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcc-cccCCCCCCeEEccC---------cc
Q 041908          388 SIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFP-KYMSMTQLAWLYLND---------NQ  457 (883)
Q Consensus       388 ~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~---------n~  457 (883)
                      .++..+..+++|++|++++|.+++.....+...+++|++|++++| +...... ....+++|++|++.+         +.
T Consensus       280 ~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~  358 (594)
T 2p1m_B          280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA  358 (594)
T ss_dssp             GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC
T ss_pred             hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCC
Confidence            445455566777777777777664444444557777777777776 3322111 223467777777733         34


Q ss_pred             cCcccccccc-CCCCCCEEEccCCccCCCcchhhh-CCCCCCEEECC--C----CcCCCCC-----CccccCCCcccEEe
Q 041908          458 FTGRLEEGLL-NAPSLHILDVSNNMLSGQLPHWVG-NFSNLDVLLMS--R----NSLEGDV-----SVPLSNLQVARILD  524 (883)
Q Consensus       458 l~~~~~~~~~-~l~~L~~L~ls~n~l~~~~p~~~~-~l~~L~~L~L~--~----n~l~~~~-----~~~l~~l~~L~~L~  524 (883)
                      +++.....+. .+++|++|+++.|.+++..+..+. .+++|++|+++  +    +.+++..     +..+..+++|+.|+
T Consensus       359 l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~  438 (594)
T 2p1m_B          359 LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS  438 (594)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEE
T ss_pred             CCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEe
Confidence            4433222232 378888888888888765555554 47888888888  3    4454221     11255678888888


Q ss_pred             cCCCcCcCcccccccc-CCCcCeeecccCccccccchhh-hcCCCCCEEeccCCcCCccCCc-cccCCCCCcEEEccCCc
Q 041908          525 ISENKLYGPLEFSFNH-SSSLWHLFLHNNSLNGSIPSAL-FQSSQLMTLDLRDNEFSGNIPP-LINEDSNLRALLLRGNN  601 (883)
Q Consensus       525 Ls~n~l~~~~~~~~~~-~~~L~~L~L~~n~l~~~~p~~~-~~~~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~  601 (883)
                      +++ .+++.....+.. +++|+.|++++|.+++..+..+ ..+++|++|+|++|.+++..+. ....+++|++|++++|+
T Consensus       439 L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~  517 (594)
T 2p1m_B          439 LSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS  517 (594)
T ss_dssp             CCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred             ecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence            876 565555444544 7788889998888876655555 6688899999999888654433 44557888999999888


Q ss_pred             ccccCchhh-cCCCCCCEEEcCCCc
Q 041908          602 LQGNIPQQL-CHLRKIAIVDISYNL  625 (883)
Q Consensus       602 l~g~~p~~l-~~l~~L~~L~ls~N~  625 (883)
                      ++......+ ..++.|+...+..+.
T Consensus       518 ~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          518 VSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             CBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             CCHHHHHHHHHhCCCCEEEEecCCC
Confidence            864434444 456777666665543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.3e-25  Score=256.37  Aligned_cols=230  Identities=21%  Similarity=0.209  Sum_probs=198.7

Q ss_pred             CcchhhhCC----CCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccch
Q 041908          485 QLPHWVGNF----SNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPS  560 (883)
Q Consensus       485 ~~p~~~~~l----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~  560 (883)
                      .+|..+..+    ++|++|++++|.+++..|..|..+++|++|++++|.+++..|  +..+++|+.|+|++|.+++..+ 
T Consensus        21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-   97 (487)
T 3oja_A           21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-   97 (487)
T ss_dssp             THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-
T ss_pred             hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-
Confidence            345555554    489999999999999989999999999999999999998776  8899999999999999985432 


Q ss_pred             hhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCccccccccc
Q 041908          561 ALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPW  640 (883)
Q Consensus       561 ~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~  640 (883)
                          .++|+.|++++|.+++..+.   .+++|+.|++++|++++..|..+..+++|+.|++++|.+++.+|..+..    
T Consensus        98 ----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~----  166 (487)
T 3oja_A           98 ----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA----  166 (487)
T ss_dssp             ----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG----
T ss_pred             ----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh----
Confidence                38999999999999987654   4588999999999999999999999999999999999998876655421    


Q ss_pred             ccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCc
Q 041908          641 MEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELT  720 (883)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~  720 (883)
                                                                                      .+++|+.|||++|.|+
T Consensus       167 ----------------------------------------------------------------~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          167 ----------------------------------------------------------------SSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             ----------------------------------------------------------------GTTTCCEEECTTSCCC
T ss_pred             ----------------------------------------------------------------hCCcccEEecCCCccc
Confidence                                                                            1568899999999999


Q ss_pred             ccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCc-ccCC
Q 041908          721 GEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLS-GPTP  796 (883)
Q Consensus       721 g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~-g~ip  796 (883)
                      +..+  +..+++|+.|+|++|.+++.+| .++.+++|+.|||++|++++ +|..+..+++|+.|++++|++. +.+|
T Consensus       183 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~  255 (487)
T 3oja_A          183 DVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR  255 (487)
T ss_dssp             EEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred             cccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence            7633  4469999999999999997555 59999999999999999996 7888999999999999999998 4443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=6.7e-25  Score=231.85  Aligned_cols=211  Identities=24%  Similarity=0.246  Sum_probs=141.2

Q ss_pred             cccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEcc
Q 041908          519 VARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLR  598 (883)
Q Consensus       519 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  598 (883)
                      +|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+.++++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            34455555555544444444555555555555555554444455556666666666666665555666666666666666


Q ss_pred             CCcccccCchhhcCCCCCCEEEcCCCcCCCC-CCcccccccccccCCCCCCCcccccccccccccchhhhcccccccccc
Q 041908          599 GNNLQGNIPQQLCHLRKIAIVDISYNLLDGS-IPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFS  677 (883)
Q Consensus       599 ~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  677 (883)
                      +|++.+..+..+..+++|+.|++++|++++. +|..+..                                         
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~-----------------------------------------  147 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-----------------------------------------  147 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-----------------------------------------
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-----------------------------------------
Confidence            6666655555566666777777777766542 3443322                                         


Q ss_pred             CCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCC----eeeCCCCcCCcCCCccccC
Q 041908          678 GEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELH----ALNLSHNHLSGSIPRSFSN  753 (883)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~----~L~Ls~N~l~g~ip~~l~~  753 (883)
                                                  +++|+.|||++|++++..+..+..++.|+    .|++++|.+++..+..+..
T Consensus       148 ----------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~  199 (276)
T 2z62_A          148 ----------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE  199 (276)
T ss_dssp             ----------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS
T ss_pred             ----------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC
Confidence                                        45677788888888777777777777776    7888999988666655544


Q ss_pred             cCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCCCc
Q 041908          754 LKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTK  799 (883)
Q Consensus       754 l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~  799 (883)
                       .+|+.|||++|++++..+..+..+++|+.|++++|+++|.+|.-.
T Consensus       200 -~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~  244 (276)
T 2z62_A          200 -IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  244 (276)
T ss_dssp             -CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred             -CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence             479999999999997777778889999999999999999888653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=3.5e-24  Score=226.33  Aligned_cols=212  Identities=21%  Similarity=0.198  Sum_probs=157.5

Q ss_pred             CCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEec
Q 041908          494 SNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDL  573 (883)
Q Consensus       494 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L  573 (883)
                      ++|++|++++|++++..+..+.++++|++|++++|++.+..+..+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            35666666666666555556666666666666666666655556667777777777777777666667777888888888


Q ss_pred             cCCcCCccCCccccCCCCCcEEEccCCcccc-cCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCccc
Q 041908          574 RDNEFSGNIPPLINEDSNLRALLLRGNNLQG-NIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVF  652 (883)
Q Consensus       574 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g-~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~  652 (883)
                      ++|++++..+..++.+++|++|++++|++++ .+|..+..+++|+.|++++|++++..+..+..+.              
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--------------  173 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH--------------  173 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH--------------
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh--------------
Confidence            8888887666678888888888888888876 3688888888888888888888765444433210              


Q ss_pred             ccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccccccccccccccc-EEEccCCcCcccCcccccccc
Q 041908          653 GYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMT-GLDLSSNELTGEIPSAIGYLQ  731 (883)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~LdLs~N~l~g~ip~~l~~l~  731 (883)
                                                                          .++.+. .||+++|++++..+..+. ..
T Consensus       174 ----------------------------------------------------~L~~l~l~L~ls~n~l~~~~~~~~~-~~  200 (276)
T 2z62_A          174 ----------------------------------------------------QMPLLNLSLDLSLNPMNFIQPGAFK-EI  200 (276)
T ss_dssp             ----------------------------------------------------TCTTCCEEEECCSSCCCEECTTSSC-SC
T ss_pred             ----------------------------------------------------hccccceeeecCCCcccccCccccC-CC
Confidence                                                                022233 799999999966665554 45


Q ss_pred             cCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCC
Q 041908          732 ELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIP  772 (883)
Q Consensus       732 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip  772 (883)
                      +|+.|+|++|++++..+..|+.+++|+.|+|++|++++..|
T Consensus       201 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             cccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            89999999999998877788999999999999999997654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=1.9e-23  Score=219.68  Aligned_cols=216  Identities=25%  Similarity=0.295  Sum_probs=159.4

Q ss_pred             CCCCccceeecCCCCCCCCCCcCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEE
Q 041908           64 SDCCSWERIKCNVTTANYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVL  143 (883)
Q Consensus        64 ~~cc~w~gv~C~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L  143 (883)
                      .++|.|.|+.|....          ..++++++++.+.. +|..+.  +.|++|+|++|++..  +|...+.++++|++|
T Consensus         2 ~~~C~~~~~~C~c~~----------~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~--~~~~~~~~l~~L~~L   66 (270)
T 2o6q_A            2 EALCKKDGGVCSCNN----------NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSS--LPSKAFHRLTKLRLL   66 (270)
T ss_dssp             CCCBGGGTCSBEEET----------TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSC--CCTTSSSSCTTCCEE
T ss_pred             CccCCCCCCCCEeCC----------CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCe--eCHHHhcCCCCCCEE
Confidence            479999999996432          46889999999886 565554  689999999999987  666789999999999


Q ss_pred             ECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhh
Q 041908          144 DLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISV  223 (883)
Q Consensus       144 ~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~  223 (883)
                      ++++|.+.+..+                 ..+..+++|++|+|++|++++..+..+..+++|++|++++|+++ .+|...
T Consensus        67 ~l~~n~l~~i~~-----------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~  128 (270)
T 2o6q_A           67 YLNDNKLQTLPA-----------------GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRV  128 (270)
T ss_dssp             ECCSSCCSCCCT-----------------TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTT
T ss_pred             ECCCCccCeeCh-----------------hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHH
Confidence            999998875443                 45678999999999999999777777899999999999999999 555477


Q ss_pred             hcCCCCCCEEeccCCcCccccChHhhhcCCCCcEEEccCcccccCCCC-CCCCccceEEEcccCcCCccCchhhhcCCCC
Q 041908          224 FANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFP-WLPRFQLKVLNLRRCNISGTIPSFLQYQYDL  302 (883)
Q Consensus       224 ~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L  302 (883)
                      |+++++|++|++++|.++ .++...+..+++|++|++++|.+...... +..+++|++|++++|.+++..+..+..+++|
T Consensus       129 ~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  207 (270)
T 2o6q_A          129 FDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL  207 (270)
T ss_dssp             TTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             hCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence            899999999999999988 45656677777777777766665544332 2233445555555555444444444444455


Q ss_pred             CEEEccCCCCc
Q 041908          303 RYIDLSHNNLA  313 (883)
Q Consensus       303 ~~L~Ls~n~l~  313 (883)
                      ++|++++|.+.
T Consensus       208 ~~L~l~~N~~~  218 (270)
T 2o6q_A          208 KMLQLQENPWD  218 (270)
T ss_dssp             CEEECCSSCBC
T ss_pred             CEEEecCCCee
Confidence            55555554443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=2.9e-23  Score=218.27  Aligned_cols=186  Identities=24%  Similarity=0.258  Sum_probs=141.7

Q ss_pred             CcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcC
Q 041908          543 SLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDIS  622 (883)
Q Consensus       543 ~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls  622 (883)
                      ++++|++++|++++..+..|.++++|++|++++|+++...+..+..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            55666666666654444456666677777777777665444555667777777777777776555666777777777777


Q ss_pred             CCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccccccc
Q 041908          623 YNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYK  702 (883)
Q Consensus       623 ~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  702 (883)
                      +|++++..|..|..                                                                  
T Consensus       118 ~n~l~~~~~~~~~~------------------------------------------------------------------  131 (270)
T 2o6q_A          118 RNQLKSLPPRVFDS------------------------------------------------------------------  131 (270)
T ss_dssp             SSCCCCCCTTTTTT------------------------------------------------------------------
T ss_pred             CCccCeeCHHHhCc------------------------------------------------------------------
Confidence            77776554443322                                                                  


Q ss_pred             ccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCc
Q 041908          703 GGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLA  782 (883)
Q Consensus       703 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~  782 (883)
                         +++|+.|+|++|++++..+..|+.+++|+.|+|++|++++..|..|..+++|+.|||++|++++..+..+..+++|+
T Consensus       132 ---l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (270)
T 2o6q_A          132 ---LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK  208 (270)
T ss_dssp             ---CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             ---CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence               46788899999998866666788999999999999999988888899999999999999999987777889999999


Q ss_pred             EEEccCCcCcccCCC
Q 041908          783 IFNVSYNDLSGPTPN  797 (883)
Q Consensus       783 ~l~ls~N~l~g~ip~  797 (883)
                      .|++++|++.|.++.
T Consensus       209 ~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          209 MLQLQENPWDCTCNG  223 (270)
T ss_dssp             EEECCSSCBCCSSSS
T ss_pred             EEEecCCCeeCCCcc
Confidence            999999999998764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=9.1e-24  Score=222.35  Aligned_cols=180  Identities=26%  Similarity=0.271  Sum_probs=127.3

Q ss_pred             CCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEE
Q 041908          541 SSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVD  620 (883)
Q Consensus       541 ~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~  620 (883)
                      +++|++|++++|.+++ + +.+..+++|++|++++|++++..+..++.+++|++|++++|++++..+..+..+++|+.|+
T Consensus        62 l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  139 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN  139 (272)
T ss_dssp             CTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence            3344444444444432 1 2445556666666666666655555566666666666666666655555566677777777


Q ss_pred             cCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccccc
Q 041908          621 ISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYES  700 (883)
Q Consensus       621 ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  700 (883)
                      +++|++++..|..+..                                                                
T Consensus       140 L~~n~l~~~~~~~~~~----------------------------------------------------------------  155 (272)
T 3rfs_A          140 LAHNQLQSLPKGVFDK----------------------------------------------------------------  155 (272)
T ss_dssp             CCSSCCCCCCTTTTTT----------------------------------------------------------------
T ss_pred             CCCCccCccCHHHhcc----------------------------------------------------------------
Confidence            7777766544433221                                                                


Q ss_pred             ccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCC
Q 041908          701 YKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNY  780 (883)
Q Consensus       701 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~  780 (883)
                           +++|+.|+|++|++++..|..++.+++|++|+|++|++++.+|..++.+++|+.|+|++|++++..|       .
T Consensus       156 -----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~  223 (272)
T 3rfs_A          156 -----LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------G  223 (272)
T ss_dssp             -----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-------T
T ss_pred             -----CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-------H
Confidence                 4567888888888887777778889999999999999998888888999999999999999987654       6


Q ss_pred             CcEEEccCCcCcccCCCC
Q 041908          781 LAIFNVSYNDLSGPTPNT  798 (883)
Q Consensus       781 L~~l~ls~N~l~g~ip~~  798 (883)
                      |+.+++++|.++|.+|..
T Consensus       224 l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          224 IRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             THHHHHHHHHTGGGBBCT
T ss_pred             HHHHHHHHHhCCCcccCc
Confidence            888999999999999965

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.7e-23  Score=220.23  Aligned_cols=135  Identities=21%  Similarity=0.253  Sum_probs=70.6

Q ss_pred             hCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCE
Q 041908          491 GNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMT  570 (883)
Q Consensus       491 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~  570 (883)
                      ..+++|+.|++++|.++..  ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            3445555555555555421  1244555555555555555442  24445555555555555555444444555555555


Q ss_pred             EeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCC
Q 041908          571 LDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGS  629 (883)
Q Consensus       571 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~  629 (883)
                      |++++|++++..+..++.+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  172 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL  172 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence            55555555544444455555555555555555544444455555555555555555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=7.4e-23  Score=217.06  Aligned_cols=205  Identities=21%  Similarity=0.198  Sum_probs=145.0

Q ss_pred             cCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcE
Q 041908          515 SNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRA  594 (883)
Q Consensus       515 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  594 (883)
                      .++++++.+++++|.++. +|..+  .++++.|++++|.+++..|..+..+++|+.|++++|++++..+ . +.+++|++
T Consensus         7 ~~l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~   81 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGT   81 (290)
T ss_dssp             ECSTTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCE
T ss_pred             cccCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCE
Confidence            344445555555555443 22222  1356666666666665556666666777777777777664322 2 56677777


Q ss_pred             EEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccc
Q 041908          595 LLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNL  674 (883)
Q Consensus       595 L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  674 (883)
                      |++++|+++ .+|..+..+++|+.|++++|++++..|..|..                                      
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~--------------------------------------  122 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG--------------------------------------  122 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT--------------------------------------
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC--------------------------------------
Confidence            777777776 56777777777788888888777554444322                                      


Q ss_pred             cccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCc
Q 041908          675 IFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNL  754 (883)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l  754 (883)
                                                     +++|+.|+|++|++++..+..|..+++|+.|+|++|+|++..+..|..+
T Consensus       123 -------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l  171 (290)
T 1p9a_G          123 -------------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL  171 (290)
T ss_dssp             -------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTC
T ss_pred             -------------------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCc
Confidence                                           4567888888888887767778888899999999999987767777889


Q ss_pred             CCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccC
Q 041908          755 KMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPT  795 (883)
Q Consensus       755 ~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~i  795 (883)
                      ++|+.|+|++|+++ .+|..+..+..|+.+++++|++.|.+
T Consensus       172 ~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          172 ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             CCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence            99999999999998 67888888888999999999988765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=1.3e-24  Score=238.98  Aligned_cols=178  Identities=24%  Similarity=0.188  Sum_probs=97.6

Q ss_pred             eEEccCcccCccccccccCCCCCCEEEccCCccCCCcc----hhhhCCC-CCCEEECCCCcCCCCCCccccCC-----Cc
Q 041908          450 WLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLP----HWVGNFS-NLDVLLMSRNSLEGDVSVPLSNL-----QV  519 (883)
Q Consensus       450 ~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l-----~~  519 (883)
                      .++++.|.+++.+|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35667777777777666666667777777777766555    5566666 67777777777766655555543     66


Q ss_pred             ccEEecCCCcCcCccccccc----cC-CCcCeeecccCccccccchhhhc-----CCCCCEEeccCCcCCccCC----cc
Q 041908          520 ARILDISENKLYGPLEFSFN----HS-SSLWHLFLHNNSLNGSIPSALFQ-----SSQLMTLDLRDNEFSGNIP----PL  585 (883)
Q Consensus       520 L~~L~Ls~n~l~~~~~~~~~----~~-~~L~~L~L~~n~l~~~~p~~~~~-----~~~L~~L~Ls~N~l~~~~p----~~  585 (883)
                      |++|++++|++++..+..+.    .+ ++|++|++++|++++..+..+..     +++|++|+|++|++++..+    ..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            66666666666554444322    22 45566666666555444433322     2455555555555553222    22


Q ss_pred             ccCCC-CCcEEEccCCcccccCchhhc----CC-CCCCEEEcCCCcCC
Q 041908          586 INEDS-NLRALLLRGNNLQGNIPQQLC----HL-RKIAIVDISYNLLD  627 (883)
Q Consensus       586 l~~l~-~L~~L~L~~N~l~g~~p~~l~----~l-~~L~~L~ls~N~l~  627 (883)
                      +..++ +|++|+|++|++++..+..++    .+ ++|+.||+++|.++
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence            22332 555555555555544433222    22 34555555555443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=1.5e-24  Score=238.60  Aligned_cols=183  Identities=21%  Similarity=0.206  Sum_probs=96.6

Q ss_pred             CCCeEEccCcccCcccc----ccccCCC-CCCEEEccCCccCCCcchhhhCC-----CCCCEEECCCCcCCCCCCcccc-
Q 041908          447 QLAWLYLNDNQFTGRLE----EGLLNAP-SLHILDVSNNMLSGQLPHWVGNF-----SNLDVLLMSRNSLEGDVSVPLS-  515 (883)
Q Consensus       447 ~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~ls~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~-  515 (883)
                      +|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++|++|++++|.+++..+..+. 
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            34444444444443333    3344444 45555555555554444444442     5555555555555544443322 


Q ss_pred             ---CC-CcccEEecCCCcCcCcccccc----cc-CCCcCeeecccCcccccc----chhhhcCC-CCCEEeccCCcCCcc
Q 041908          516 ---NL-QVARILDISENKLYGPLEFSF----NH-SSSLWHLFLHNNSLNGSI----PSALFQSS-QLMTLDLRDNEFSGN  581 (883)
Q Consensus       516 ---~l-~~L~~L~Ls~n~l~~~~~~~~----~~-~~~L~~L~L~~n~l~~~~----p~~~~~~~-~L~~L~Ls~N~l~~~  581 (883)
                         .+ ++|++|++++|++++..+..+    .. .++|++|++++|.+++..    +..+...+ +|++|+|++|++++.
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~  182 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK  182 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence               22 555556666555554444332    22 246666666666666432    33334444 677777777777665


Q ss_pred             CCcccc----CC-CCCcEEEccCCccccc----CchhhcC-CCCCCEEEcCCCcCCCC
Q 041908          582 IPPLIN----ED-SNLRALLLRGNNLQGN----IPQQLCH-LRKIAIVDISYNLLDGS  629 (883)
Q Consensus       582 ~p~~l~----~l-~~L~~L~L~~N~l~g~----~p~~l~~-l~~L~~L~ls~N~l~~~  629 (883)
                      .+..+.    .+ ++|++|+|++|++++.    ++..+.. .++|+.||+++|++++.
T Consensus       183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence            554332    33 4777777777777652    4444544 34777777777776643

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=4.8e-25  Score=245.04  Aligned_cols=249  Identities=18%  Similarity=0.237  Sum_probs=153.5

Q ss_pred             ccccccCCCCCCEEEccCCccCCCcch----hhhCCCCCCEEECCCCc---CCCCCCccccCCCcccEEecCCCcCcCcc
Q 041908          462 LEEGLLNAPSLHILDVSNNMLSGQLPH----WVGNFSNLDVLLMSRNS---LEGDVSVPLSNLQVARILDISENKLYGPL  534 (883)
Q Consensus       462 ~~~~~~~l~~L~~L~ls~n~l~~~~p~----~~~~l~~L~~L~L~~n~---l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  534 (883)
                      ++..+..+++|++|++++|.+++..+.    .+..+++|++|++++|.   +++.+|..+.                 .+
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~-----------------~l   86 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR-----------------LL   86 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH-----------------HH
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHH-----------------HH
Confidence            334455556666666666666544332    24455666666666542   2233333220                 00


Q ss_pred             ccccccCCCcCeeecccCcccc----ccchhhhcCCCCCEEeccCCcCCccCCcccc----CC---------CCCcEEEc
Q 041908          535 EFSFNHSSSLWHLFLHNNSLNG----SIPSALFQSSQLMTLDLRDNEFSGNIPPLIN----ED---------SNLRALLL  597 (883)
Q Consensus       535 ~~~~~~~~~L~~L~L~~n~l~~----~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~----~l---------~~L~~L~L  597 (883)
                      ...+..+++|++|+|++|.+++    .+|..+..+++|++|+|++|.+++..+..+.    .+         ++|++|++
T Consensus        87 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L  166 (386)
T 2ca6_A           87 LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC  166 (386)
T ss_dssp             HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred             HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence            0112445555666666665554    3555666666666666666666543332222    22         67777777


Q ss_pred             cCCccc-ccCc---hhhcCCCCCCEEEcCCCcCCCC-----CCcccccccccccCCCCCCCcccccccccccccchhhhc
Q 041908          598 RGNNLQ-GNIP---QQLCHLRKIAIVDISYNLLDGS-----IPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYY  668 (883)
Q Consensus       598 ~~N~l~-g~~p---~~l~~l~~L~~L~ls~N~l~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  668 (883)
                      ++|+++ +.+|   ..+..+++|+.|++++|+++..     +|..+                                  
T Consensus       167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l----------------------------------  212 (386)
T 2ca6_A          167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL----------------------------------  212 (386)
T ss_dssp             CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG----------------------------------
T ss_pred             CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHh----------------------------------
Confidence            777776 3444   3566677777777777766410     00000                                  


Q ss_pred             cccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCc----ccCcccccccccCCeeeCCCCcCC
Q 041908          669 NSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELT----GEIPSAIGYLQELHALNLSHNHLS  744 (883)
Q Consensus       669 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~----g~ip~~l~~l~~L~~L~Ls~N~l~  744 (883)
                                                         ..+++|+.|+|++|.++    +.+|..+..+++|+.|+|++|.++
T Consensus       213 -----------------------------------~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~  257 (386)
T 2ca6_A          213 -----------------------------------AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  257 (386)
T ss_dssp             -----------------------------------GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             -----------------------------------hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence                                               11466778888888886    567778888888888888888888


Q ss_pred             cC----CCcccc--CcCCCCEEECCCCcccc----cCCccc-cCCCCCcEEEccCCcCcccCC
Q 041908          745 GS----IPRSFS--NLKMIESMDLSYNKLRG----QIPLEL-SELNYLAIFNVSYNDLSGPTP  796 (883)
Q Consensus       745 g~----ip~~l~--~l~~L~~LdLs~N~Lsg----~ip~~l-~~l~~L~~l~ls~N~l~g~ip  796 (883)
                      +.    +|..+.  .+++|+.|+|++|++++    .+|..+ .++++|++|++++|++++..|
T Consensus       258 ~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          258 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             hhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            76    566663  38888888888888887    477777 567888888888888887664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=1.2e-22  Score=211.22  Aligned_cols=212  Identities=20%  Similarity=0.209  Sum_probs=156.4

Q ss_pred             CcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcC
Q 041908          543 SLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDIS  622 (883)
Q Consensus       543 ~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls  622 (883)
                      ..++++++++.++ .+|..+.  ++++.|++++|++++..+..+..+++|++|++++|++++..|..+..+++|+.|+++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            4456666666665 4555443  577888888888887777778888888888888888887777778888888888888


Q ss_pred             CCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccccccc
Q 041908          623 YNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYK  702 (883)
Q Consensus       623 ~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  702 (883)
                      +|++++..|..|..                                                                  
T Consensus        92 ~n~l~~~~~~~~~~------------------------------------------------------------------  105 (251)
T 3m19_A           92 NNQLASLPLGVFDH------------------------------------------------------------------  105 (251)
T ss_dssp             TSCCCCCCTTTTTT------------------------------------------------------------------
T ss_pred             CCcccccChhHhcc------------------------------------------------------------------
Confidence            88887554443322                                                                  


Q ss_pred             ccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCc
Q 041908          703 GGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLA  782 (883)
Q Consensus       703 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~  782 (883)
                         +++|+.|+|++|+|++..+..|+.+++|++|+|++|++++..|..|+.+++|+.|||++|++++..|..+..+++|+
T Consensus       106 ---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  182 (251)
T 3m19_A          106 ---LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ  182 (251)
T ss_dssp             ---CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             ---cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence               46788899999999977777788999999999999999988887899999999999999999988888899999999


Q ss_pred             EEEccCCcCcccCCCCccCCCC------CCcccCCCcCCCCCCCCCCCCCC
Q 041908          783 IFNVSYNDLSGPTPNTKQFANF------DESNYRGNLNLCGPAVLKNCSTD  827 (883)
Q Consensus       783 ~l~ls~N~l~g~ip~~~~~~~~------~~~~~~gn~~lc~~~~~~~c~~~  827 (883)
                      .|++++|+++|..+....+..|      ......|+. +|+.+....|...
T Consensus       183 ~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~  232 (251)
T 3m19_A          183 TITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQN-LHESPDGVTCSDG  232 (251)
T ss_dssp             EEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred             EEEeeCCceeCCccccHHHHHHHHhcccceeeccCcc-cccCCCcCccCCC
Confidence            9999999999875433222111      011123443 6766666677643

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=1.9e-24  Score=240.17  Aligned_cols=189  Identities=16%  Similarity=0.181  Sum_probs=116.8

Q ss_pred             CcccccCCCCCCeEEccCcccCcccc----ccccCCCCCCEEEccCCc---cCCCcchhh-------hCCCCCCEEECCC
Q 041908          438 IFPKYMSMTQLAWLYLNDNQFTGRLE----EGLLNAPSLHILDVSNNM---LSGQLPHWV-------GNFSNLDVLLMSR  503 (883)
Q Consensus       438 ~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~ls~n~---l~~~~p~~~-------~~l~~L~~L~L~~  503 (883)
                      ++..+..+++|++|++++|.+....+    ..+..+++|++|++++|.   +++.+|..+       ..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            45566778999999999999987644    447789999999999964   455566655       6778888888888


Q ss_pred             CcCCC----CCCccccCCCcccEEecCCCcCcCccccccc----cC---------CCcCeeecccCccc-cccc---hhh
Q 041908          504 NSLEG----DVSVPLSNLQVARILDISENKLYGPLEFSFN----HS---------SSLWHLFLHNNSLN-GSIP---SAL  562 (883)
Q Consensus       504 n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~----~~---------~~L~~L~L~~n~l~-~~~p---~~~  562 (883)
                      |.+++    .+|..+..+++|++|++++|.+++..+..+.    .+         ++|++|++++|+++ +.+|   ..+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            88876    3555667777777777777777544333322    22         55666666666654 2333   244


Q ss_pred             hcCCCCCEEeccCCcCCc-----cCCccccCCCCCcEEEccCCccc----ccCchhhcCCCCCCEEEcCCCcC
Q 041908          563 FQSSQLMTLDLRDNEFSG-----NIPPLINEDSNLRALLLRGNNLQ----GNIPQQLCHLRKIAIVDISYNLL  626 (883)
Q Consensus       563 ~~~~~L~~L~Ls~N~l~~-----~~p~~l~~l~~L~~L~L~~N~l~----g~~p~~l~~l~~L~~L~ls~N~l  626 (883)
                      ..+++|++|++++|+++.     ..|..+..+++|++|+|++|.++    +.+|..+..+++|+.|++++|.+
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i  256 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  256 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence            455555555555555552     12224445555555555555553    33444444444444444444433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=1.4e-23  Score=228.66  Aligned_cols=251  Identities=18%  Similarity=0.198  Sum_probs=189.0

Q ss_pred             CCCEEEccCCccCCCcchhhhCC--CCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCc-cccccccCCCcCee
Q 041908          471 SLHILDVSNNMLSGQLPHWVGNF--SNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGP-LEFSFNHSSSLWHL  547 (883)
Q Consensus       471 ~L~~L~ls~n~l~~~~p~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~L~~L  547 (883)
                      .++.+++++|.+.   +..+..+  +.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            3667777777665   4555665  7788888888887776555 45678888888888887765 66677888888888


Q ss_pred             ecccCccccccchhhhcCCCCCEEeccCC-cCCcc-CCccccCCCCCcEEEccCC-ccccc-CchhhcCCC-CCCEEEcC
Q 041908          548 FLHNNSLNGSIPSALFQSSQLMTLDLRDN-EFSGN-IPPLINEDSNLRALLLRGN-NLQGN-IPQQLCHLR-KIAIVDIS  622 (883)
Q Consensus       548 ~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~L~L~~N-~l~g~-~p~~l~~l~-~L~~L~ls  622 (883)
                      ++++|.+++..|..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|+.|+++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            88888888788888888888999999888 67753 6666788888999999998 88764 677788888 99999999


Q ss_pred             CCc--CC-CCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccc
Q 041908          623 YNL--LD-GSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYE  699 (883)
Q Consensus       623 ~N~--l~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  699 (883)
                      +|.  ++ +.+|..+                                                                 
T Consensus       204 ~~~~~~~~~~l~~~~-----------------------------------------------------------------  218 (336)
T 2ast_B          204 GYRKNLQKSDLSTLV-----------------------------------------------------------------  218 (336)
T ss_dssp             SCGGGSCHHHHHHHH-----------------------------------------------------------------
T ss_pred             CCcccCCHHHHHHHH-----------------------------------------------------------------
Confidence            884  33 1111111                                                                 


Q ss_pred             cccccccccccEEEccCCc-CcccCcccccccccCCeeeCCCCc-CCcCCCccccCcCCCCEEECCCCcccccCCccccC
Q 041908          700 SYKGGVLEYMTGLDLSSNE-LTGEIPSAIGYLQELHALNLSHNH-LSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSE  777 (883)
Q Consensus       700 ~~~~~~l~~L~~LdLs~N~-l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~  777 (883)
                          ..+++|+.|+|++|. +++..+..++.+++|++|+|++|. ++......++++++|+.|++++| ++.   ..+..
T Consensus       219 ----~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~  290 (336)
T 2ast_B          219 ----RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQL  290 (336)
T ss_dssp             ----HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHH
T ss_pred             ----hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHH
Confidence                125788999999999 788888899999999999999995 33222236888999999999999 332   23344


Q ss_pred             CC-CCcEEEccCCcCcccCCCC
Q 041908          778 LN-YLAIFNVSYNDLSGPTPNT  798 (883)
Q Consensus       778 l~-~L~~l~ls~N~l~g~ip~~  798 (883)
                      +. .+..|++++|+++|..|..
T Consensus       291 l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          291 LKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             HHHHSTTSEESCCCSCCTTCSS
T ss_pred             HHhhCcceEEecccCccccCCc
Confidence            42 3677789999999988854

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=9.9e-23  Score=218.93  Aligned_cols=209  Identities=17%  Similarity=0.145  Sum_probs=122.7

Q ss_pred             CCCCEEECCCCcCCCCCCccc--cCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEE
Q 041908          494 SNLDVLLMSRNSLEGDVSVPL--SNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTL  571 (883)
Q Consensus       494 ~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L  571 (883)
                      ++|++|++++|.+++..|..+  ..+++|++|++++|.+.+..+..                    ....+..+++|++|
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~--------------------~~~~~~~~~~L~~L  150 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL--------------------AELQQWLKPGLKVL  150 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH--------------------HHHHTTBCSCCCEE
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh--------------------HHHHhhhccCCCEE
Confidence            446666666666655555544  44555555555555444322200                    00223345666666


Q ss_pred             eccCCcCCccCCccccCCCCCcEEEccCCccccc--Cc--hhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCC
Q 041908          572 DLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGN--IP--QQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPF  647 (883)
Q Consensus       572 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~--~p--~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~  647 (883)
                      ++++|++++..|..++.+++|++|+|++|++.+.  ++  ..+..+++|++|++++|+++. +|.....+          
T Consensus       151 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l----------  219 (310)
T 4glp_A          151 SIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAAL----------  219 (310)
T ss_dssp             EEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHH----------
T ss_pred             EeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHH----------
Confidence            6666666655556666666666666666665542  21  223456667777777776641 11100000          


Q ss_pred             CCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccc
Q 041908          648 NGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAI  727 (883)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l  727 (883)
                                                                             ...+++|++|||++|++++.+|..+
T Consensus       220 -------------------------------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~~  244 (310)
T 4glp_A          220 -------------------------------------------------------AAAGVQPHSLDLSHNSLRATVNPSA  244 (310)
T ss_dssp             -------------------------------------------------------HHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred             -------------------------------------------------------HhcCCCCCEEECCCCCCCccchhhH
Confidence                                                                   0114566777777777777767666


Q ss_pred             ccc---ccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcc
Q 041908          728 GYL---QELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSG  793 (883)
Q Consensus       728 ~~l---~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g  793 (883)
                      +.+   ++|++|+|++|+|+ .+|..+.  ++|+.|||++|+|++. |. +..+++|+.|++++|+++.
T Consensus       245 ~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          245 PRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             HhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            666   57778888888887 5666664  6788888888888763 33 4666778888888887764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=8.2e-23  Score=219.55  Aligned_cols=202  Identities=21%  Similarity=0.263  Sum_probs=160.8

Q ss_pred             CCCcCeeecccCccccccchhh--hcCCCCCEEeccCCcCCccCC----ccccCCCCCcEEEccCCcccccCchhhcCCC
Q 041908          541 SSSLWHLFLHNNSLNGSIPSAL--FQSSQLMTLDLRDNEFSGNIP----PLINEDSNLRALLLRGNNLQGNIPQQLCHLR  614 (883)
Q Consensus       541 ~~~L~~L~L~~n~l~~~~p~~~--~~~~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~  614 (883)
                      +++|++|++++|.+++..|..+  ..+++|++|++++|++++..+    ..+..+++|++|++++|++.+..|..+..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            3568888888888887777777  778888888888888887655    3445789999999999999988889999999


Q ss_pred             CCCEEEcCCCcCCCC--CCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEE
Q 041908          615 KIAIVDISYNLLDGS--IPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKF  692 (883)
Q Consensus       615 ~L~~L~ls~N~l~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  692 (883)
                      +|++||+++|++.+.  ++....                                                         
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~---------------------------------------------------------  192 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALC---------------------------------------------------------  192 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSC---------------------------------------------------------
T ss_pred             CCCEEECCCCCCccchhhhHHHh---------------------------------------------------------
Confidence            999999999998642  111000                                                         


Q ss_pred             eeccccccccccccccccEEEccCCcCcccCcc----cccccccCCeeeCCCCcCCcCCCccccCc---CCCCEEECCCC
Q 041908          693 MAKNRYESYKGGVLEYMTGLDLSSNELTGEIPS----AIGYLQELHALNLSHNHLSGSIPRSFSNL---KMIESMDLSYN  765 (883)
Q Consensus       693 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~----~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l---~~L~~LdLs~N  765 (883)
                                ...+++|++|+|++|+++ .+|.    .++.+++|++|+|++|++++.+|..++.+   ++|++|+|++|
T Consensus       193 ----------~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N  261 (310)
T 4glp_A          193 ----------PHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA  261 (310)
T ss_dssp             ----------TTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS
T ss_pred             ----------hhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC
Confidence                      012578899999999997 3333    35788999999999999999989888887   69999999999


Q ss_pred             cccccCCccccCCCCCcEEEccCCcCcccCCCCccCCCCCCcccCCCcC
Q 041908          766 KLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLN  814 (883)
Q Consensus       766 ~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~  814 (883)
                      +++ .+|..+.  ++|+.||+++|++++. |.-..+..+....+.||+-
T Consensus       262 ~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          262 GLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             CCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTT
T ss_pred             CCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCC
Confidence            999 7788775  7999999999999983 4334455555556677763

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=2.2e-23  Score=227.07  Aligned_cols=198  Identities=16%  Similarity=0.137  Sum_probs=106.8

Q ss_pred             CCCEEEccCcccCCcCcccccCC--CCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCC-cchhhhCCCCCCEE
Q 041908          423 SLAFMNVSHNYFGGQIFPKYMSM--TQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQ-LPHWVGNFSNLDVL  499 (883)
Q Consensus       423 ~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~p~~~~~l~~L~~L  499 (883)
                      .++.++++++.+.   +..+..+  +.++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            3667777776665   2334444  5666777777766655544 33566666666666666544 55556666666666


Q ss_pred             ECCCCcCCCCCCccccCCCcccEEecCCC-cCcCc-cccccccCCCcCeeecccC-ccccc-cchhhhcCC-CCCEEecc
Q 041908          500 LMSRNSLEGDVSVPLSNLQVARILDISEN-KLYGP-LEFSFNHSSSLWHLFLHNN-SLNGS-IPSALFQSS-QLMTLDLR  574 (883)
Q Consensus       500 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~~~~~~~L~~L~L~~n-~l~~~-~p~~~~~~~-~L~~L~Ls  574 (883)
                      ++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            66666665555555555666666666665 34432 3333444555555555555 55433 344445555 55555555


Q ss_pred             CC--cCC-ccCCccccCCCCCcEEEccCCc-ccccCchhhcCCCCCCEEEcCCC
Q 041908          575 DN--EFS-GNIPPLINEDSNLRALLLRGNN-LQGNIPQQLCHLRKIAIVDISYN  624 (883)
Q Consensus       575 ~N--~l~-~~~p~~l~~l~~L~~L~L~~N~-l~g~~p~~l~~l~~L~~L~ls~N  624 (883)
                      +|  .++ +.+|..+..+++|++|++++|. +++..+..+..+++|+.|++++|
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            55  233 2333444444455555555554 34344444444444444444444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=1.4e-21  Score=207.13  Aligned_cols=135  Identities=25%  Similarity=0.274  Sum_probs=77.3

Q ss_pred             CCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEE
Q 041908          492 NFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTL  571 (883)
Q Consensus       492 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L  571 (883)
                      .+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|
T Consensus        75 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  153 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (290)
T ss_dssp             CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence            3444444444444444 233344444555555555555554444455555555555555555554444445556666666


Q ss_pred             eccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCC
Q 041908          572 DLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDG  628 (883)
Q Consensus       572 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~  628 (883)
                      +|++|++++..+..+..+++|++|+|++|+++ .+|..+..+.+|+.+++++|++..
T Consensus       154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            66666666544445566667777777777766 566666666677777777777654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=2.5e-21  Score=207.43  Aligned_cols=60  Identities=22%  Similarity=0.359  Sum_probs=36.5

Q ss_pred             cccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccc
Q 041908          706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRG  769 (883)
Q Consensus       706 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg  769 (883)
                      +++|+.|+|++|++++..|  +..+++|+.|+|++|++++..|  +..+++|+.|+|++|++++
T Consensus       172 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            3455666666666663332  5666666666666666665442  6666666666666666654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=1.7e-21  Score=200.83  Aligned_cols=79  Identities=20%  Similarity=0.168  Sum_probs=41.7

Q ss_pred             cccc-EEEccCCcCcccCcccccccccCCeeeCCCCc-CCcCCCccccCc-CCCCEEECCCCcccccCCccccCCCCCcE
Q 041908          707 EYMT-GLDLSSNELTGEIPSAIGYLQELHALNLSHNH-LSGSIPRSFSNL-KMIESMDLSYNKLRGQIPLELSELNYLAI  783 (883)
Q Consensus       707 ~~L~-~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~ip~~l~~l-~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~  783 (883)
                      ++|+ .|++++|+++ .+|......++|+.|+|++|+ +++..+..|+.+ ++|+.||+++|++++ +|..  .+++|+.
T Consensus       155 ~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~  230 (239)
T 2xwt_C          155 CNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKE  230 (239)
T ss_dssp             BSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSE
T ss_pred             hcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCce
Confidence            3445 5555555555 333332222556666666663 655555556666 666666666666653 3322  3445555


Q ss_pred             EEccCC
Q 041908          784 FNVSYN  789 (883)
Q Consensus       784 l~ls~N  789 (883)
                      |+++++
T Consensus       231 L~l~~~  236 (239)
T 2xwt_C          231 LIARNT  236 (239)
T ss_dssp             EECTTC
T ss_pred             eeccCc
Confidence            665544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=4.5e-21  Score=205.45  Aligned_cols=173  Identities=17%  Similarity=0.307  Sum_probs=127.3

Q ss_pred             cccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCC
Q 041908          538 FNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIA  617 (883)
Q Consensus       538 ~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~  617 (883)
                      +..+++|++|++++|.+++ ++. +..+++|++|++++|++++. + .+..+++|++|++++|++++ ++. +..+++|+
T Consensus        59 ~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~  132 (308)
T 1h6u_A           59 VQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQ  132 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCC
T ss_pred             hhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCC
Confidence            4444555555555555553 222 56666666666666666642 2 46667777777777777764 333 67777788


Q ss_pred             EEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccc
Q 041908          618 IVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNR  697 (883)
Q Consensus       618 ~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  697 (883)
                      .|++++|++++..+  +                                                               
T Consensus       133 ~L~l~~n~l~~~~~--l---------------------------------------------------------------  147 (308)
T 1h6u_A          133 VLYLDLNQITNISP--L---------------------------------------------------------------  147 (308)
T ss_dssp             EEECCSSCCCCCGG--G---------------------------------------------------------------
T ss_pred             EEECCCCccCcCcc--c---------------------------------------------------------------
Confidence            88888887764322  1                                                               


Q ss_pred             cccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccC
Q 041908          698 YESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSE  777 (883)
Q Consensus       698 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~  777 (883)
                            ..+++|+.|+|++|++++. |. +..+++|+.|+|++|++++..|  +..+++|+.|+|++|++++..|  +..
T Consensus       148 ------~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~  215 (308)
T 1h6u_A          148 ------AGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LAN  215 (308)
T ss_dssp             ------GGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTT
T ss_pred             ------cCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccC
Confidence                  1156788999999999854 44 8999999999999999997654  8999999999999999997654  899


Q ss_pred             CCCCcEEEccCCcCcc
Q 041908          778 LNYLAIFNVSYNDLSG  793 (883)
Q Consensus       778 l~~L~~l~ls~N~l~g  793 (883)
                      +++|+.|++++|++++
T Consensus       216 l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          216 TSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CTTCCEEEEEEEEEEC
T ss_pred             CCCCCEEEccCCeeec
Confidence            9999999999999987

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=2.4e-21  Score=199.70  Aligned_cols=197  Identities=18%  Similarity=0.139  Sum_probs=137.3

Q ss_pred             CCCEEECCCCcCCCCCCccccCCCcccEEecCCCc-CcCccccccccCCCcCeeeccc-CccccccchhhhcCCCCCEEe
Q 041908          495 NLDVLLMSRNSLEGDVSVPLSNLQVARILDISENK-LYGPLEFSFNHSSSLWHLFLHN-NSLNGSIPSALFQSSQLMTLD  572 (883)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~L~~-n~l~~~~p~~~~~~~~L~~L~  572 (883)
                      +|++|++++|++++..+..+.++++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            45555555555555444455556666666666664 5444444566666777777776 666655455666777777777


Q ss_pred             ccCCcCCccCCccccCCCCCc---EEEccCC-cccccCchhhcCCCCCC-EEEcCCCcCCCCCCcccccccccccCCCCC
Q 041908          573 LRDNEFSGNIPPLINEDSNLR---ALLLRGN-NLQGNIPQQLCHLRKIA-IVDISYNLLDGSIPSCFTNIWPWMEEGDPF  647 (883)
Q Consensus       573 Ls~N~l~~~~p~~l~~l~~L~---~L~L~~N-~l~g~~p~~l~~l~~L~-~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~  647 (883)
                      +++|++++ +|. +..+++|+   +|++++| ++++..+..+..+++|+ .|++++|+++ .+|.....           
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~-----------  177 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFN-----------  177 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTT-----------
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcC-----------
Confidence            77777775 555 66677776   8888888 77766666788888888 8888888876 44432110           


Q ss_pred             CCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCc-CcccCccc
Q 041908          648 NGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNE-LTGEIPSA  726 (883)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~-l~g~ip~~  726 (883)
                                                                                .++|+.|+|++|+ +++..+..
T Consensus       178 ----------------------------------------------------------~~~L~~L~L~~n~~l~~i~~~~  199 (239)
T 2xwt_C          178 ----------------------------------------------------------GTKLDAVYLNKNKYLTVIDKDA  199 (239)
T ss_dssp             ----------------------------------------------------------TCEEEEEECTTCTTCCEECTTT
T ss_pred             ----------------------------------------------------------CCCCCEEEcCCCCCcccCCHHH
Confidence                                                                      1467889999995 99777788


Q ss_pred             cccc-ccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCc
Q 041908          727 IGYL-QELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNK  766 (883)
Q Consensus       727 l~~l-~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~  766 (883)
                      |.++ ++|+.|+|++|++++. |..  .+++|+.|+++++.
T Consensus       200 ~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          200 FGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             TTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred             hhccccCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence            9999 9999999999999954 443  67889999998763

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=6.7e-21  Score=191.79  Aligned_cols=184  Identities=30%  Similarity=0.351  Sum_probs=132.6

Q ss_pred             CccceeecCCCCCCCCCCcCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECC
Q 041908           67 CSWERIKCNVTTANYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLS  146 (883)
Q Consensus        67 c~w~gv~C~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls  146 (883)
                      |.|.+|.|.............++|++|++++|.+.+..+..+.++++|++|++++|++++  +|...+.++++|++|+++
T Consensus         7 C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A            7 CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS--LPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECC
T ss_pred             ECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc--cChhhcCCCCCcCEEECC
Confidence            899999998654322223335678888888888887666677888888888888888875  665567788888888888


Q ss_pred             CCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcC
Q 041908          147 GNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFAN  226 (883)
Q Consensus       147 ~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~  226 (883)
                      +|.+.+..+                 ..+..+++|++|++++|++++..+..+.++++|++|++++|+++ .+|...+..
T Consensus        85 ~n~l~~~~~-----------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~  146 (208)
T 2o6s_A           85 TNQLQSLPN-----------------GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDR  146 (208)
T ss_dssp             SSCCCCCCT-----------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTT
T ss_pred             CCcCCccCH-----------------hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhcc
Confidence            887765444                 45677788888888888887666666777888888888888877 455456777


Q ss_pred             CCCCCEEeccCCcCccccChHhhhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCC
Q 041908          227 LTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYD  301 (883)
Q Consensus       227 l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~  301 (883)
                      +++|++|++++|.+.+..+                               +|+.|+++.|.++|.+|..++.++.
T Consensus       147 l~~L~~L~l~~N~~~~~~~-------------------------------~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          147 LTSLQYIWLHDNPWDCTCP-------------------------------GIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CTTCCEEECCSCCBCCCTT-------------------------------TTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             CCCccEEEecCCCeecCCC-------------------------------CHHHHHHHHHhCCceeeccCccccC
Confidence            7778888877777664322                               3555666777777777776665544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=3.6e-20  Score=192.30  Aligned_cols=181  Identities=19%  Similarity=0.176  Sum_probs=132.9

Q ss_pred             CCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecC
Q 041908          447 QLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDIS  526 (883)
Q Consensus       447 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  526 (883)
                      ..++++++++.++ .+|..+.  +.++.|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            3455666666665 3343332  467777777777776666667777777777777777777666667777777777777


Q ss_pred             CCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccC
Q 041908          527 ENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNI  606 (883)
Q Consensus       527 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~  606 (883)
                      +|++++..+..|..+++|++|++++|++++..+..+..+++|++|+|++|++++..+..++.+++|++|+|++|++++..
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            77777766667777777888888888777555556677888888888888888666667888888888888888888777


Q ss_pred             chhhcCCCCCCEEEcCCCcCCCCC
Q 041908          607 PQQLCHLRKIAIVDISYNLLDGSI  630 (883)
Q Consensus       607 p~~l~~l~~L~~L~ls~N~l~~~~  630 (883)
                      +..+..+++|+.|++++|++++..
T Consensus       172 ~~~~~~l~~L~~L~l~~N~~~c~~  195 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGNQFDCSR  195 (251)
T ss_dssp             TTTTTTCTTCCEEECCSCCBCTTS
T ss_pred             HHHHhCCCCCCEEEeeCCceeCCc
Confidence            777888888888888888887653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=1.6e-20  Score=215.65  Aligned_cols=134  Identities=28%  Similarity=0.382  Sum_probs=81.7

Q ss_pred             CCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecc
Q 041908          471 SLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLH  550 (883)
Q Consensus       471 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~  550 (883)
                      +|+.|++++|.+++ +|..+  .++|++|++++|+++ .+|   ..+++|++|++++|++++ +|. +..  +|+.|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            67777777777765 55544  256777777777776 444   345666777777776665 444 433  66666666


Q ss_pred             cCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCC
Q 041908          551 NNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLD  627 (883)
Q Consensus       551 ~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~  627 (883)
                      +|++++ +|.   .+++|+.|++++|++++ +|.   .+++|++|+|++|++++ +|. +.  ++|+.|++++|+++
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence            666664 454   45666666666666664 444   34566666666666664 554 43  55666666666655

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=4.1e-20  Score=212.30  Aligned_cols=189  Identities=24%  Similarity=0.337  Sum_probs=136.5

Q ss_pred             CCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEec
Q 041908          494 SNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDL  573 (883)
Q Consensus       494 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L  573 (883)
                      .+++.|++++|.+++ +|..+.  ++|++|++++|+++ .+|   ..+++|+.|++++|++++ +|. +..  +|+.|++
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            388899999998887 565553  77888888888887 455   346788888888888876 666 544  7888888


Q ss_pred             cCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccc
Q 041908          574 RDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFG  653 (883)
Q Consensus       574 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~  653 (883)
                      ++|++++ +|.   .+++|+.|++++|++++ +|.   .+++|+.|++++|++++ +|. +.                  
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~------------------  179 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP------------------  179 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC------------------
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh------------------
Confidence            8888886 555   56788888888888875 565   46778888888887765 443 21                  


Q ss_pred             cccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccC
Q 041908          654 YTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQEL  733 (883)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L  733 (883)
                                                                           ++|+.|||++|+|+ .+|. +..  +|
T Consensus       180 -----------------------------------------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L  202 (571)
T 3cvr_A          180 -----------------------------------------------------ESLEALDVSTNLLE-SLPA-VPV--RN  202 (571)
T ss_dssp             -----------------------------------------------------TTCCEEECCSSCCS-SCCC-CC-----
T ss_pred             -----------------------------------------------------CCCCEEECcCCCCC-chhh-HHH--hh
Confidence                                                                 34677888888887 6666 554  66


Q ss_pred             -------CeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCC
Q 041908          734 -------HALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELN  779 (883)
Q Consensus       734 -------~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~  779 (883)
                             +.|+|++|+|+ .+|..+..+++|+.|||++|++++.+|..+..++
T Consensus       203 ~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          203 HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             -----CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence                   77888888887 5677777788888888888888877777766543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=1.7e-20  Score=190.16  Aligned_cols=159  Identities=19%  Similarity=0.195  Sum_probs=127.4

Q ss_pred             CEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCc-hhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCC
Q 041908          569 MTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIP-QQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPF  647 (883)
Q Consensus       569 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p-~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~  647 (883)
                      +.+++++|.++ .+|..+.  ..+++|++++|++++..| ..+..+++|+.|++++|++++..|..|..           
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-----------   79 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-----------   79 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence            46677777766 3555443  345677777777776644 34677788888888888777554443322           


Q ss_pred             CCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccc
Q 041908          648 NGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAI  727 (883)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l  727 (883)
                                                                                +++|+.|||++|++++..|..|
T Consensus        80 ----------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~  101 (220)
T 2v70_A           80 ----------------------------------------------------------ASGVNEILLTSNRLENVQHKMF  101 (220)
T ss_dssp             ----------------------------------------------------------CTTCCEEECCSSCCCCCCGGGG
T ss_pred             ----------------------------------------------------------CCCCCEEECCCCccCccCHhHh
Confidence                                                                      4678889999999998888889


Q ss_pred             cccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCCCc
Q 041908          728 GYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTK  799 (883)
Q Consensus       728 ~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~  799 (883)
                      +.+++|++|+|++|++++..|..|+.+++|+.|||++|++++..|..+..+++|+.|++++|+++|.++..+
T Consensus       102 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~  173 (220)
T 2v70_A          102 KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAW  173 (220)
T ss_dssp             TTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHH
T ss_pred             cCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999887543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=1.1e-19  Score=182.79  Aligned_cols=130  Identities=22%  Similarity=0.159  Sum_probs=50.7

Q ss_pred             CCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccC
Q 041908          496 LDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRD  575 (883)
Q Consensus       496 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~  575 (883)
                      |++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++
T Consensus        30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  109 (208)
T 2o6s_A           30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT  109 (208)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC
Confidence            33333333333333333333333333333333333333232333333333444444433322222333444444444444


Q ss_pred             CcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCc
Q 041908          576 NEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNL  625 (883)
Q Consensus       576 N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~  625 (883)
                      |++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus       110 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             CcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence            44443333334444444444444444443333333444444444444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.7e-19  Score=197.12  Aligned_cols=171  Identities=17%  Similarity=0.098  Sum_probs=81.5

Q ss_pred             CeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCC-ccccCCCcccE-EecC
Q 041908          449 AWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVS-VPLSNLQVARI-LDIS  526 (883)
Q Consensus       449 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~-L~Ls  526 (883)
                      ++++.++++++ .+|..+  .+++++|++++|+++...+.+|.++++|++|+|++|++.+.+| ..|.++++++. +.++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            44555666665 344433  2456666666666653333455666666666666666544333 23455554433 3344


Q ss_pred             CCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccC-CcCCccCCccccCCC-CCcEEEccCCcccc
Q 041908          527 ENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRD-NEFSGNIPPLINEDS-NLRALLLRGNNLQG  604 (883)
Q Consensus       527 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~-N~l~~~~p~~l~~l~-~L~~L~L~~N~l~g  604 (883)
                      .|++....|..|..+++|++|++++|++++..+..+....++..+++.+ +++....+..+..+. .++.|++++|+++ 
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-  167 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-  167 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence            4555555455555555555555555555543333344444445555533 334333333333332 3444555555554 


Q ss_pred             cCchhhcCCCCCCEEEcCC
Q 041908          605 NIPQQLCHLRKIAIVDISY  623 (883)
Q Consensus       605 ~~p~~l~~l~~L~~L~ls~  623 (883)
                      .+|.......+|+.+++++
T Consensus       168 ~i~~~~f~~~~L~~l~l~~  186 (350)
T 4ay9_X          168 EIHNSAFNGTQLDELNLSD  186 (350)
T ss_dssp             EECTTSSTTEEEEEEECTT
T ss_pred             CCChhhccccchhHHhhcc
Confidence            2333222333444444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=7.7e-20  Score=185.37  Aligned_cols=157  Identities=21%  Similarity=0.258  Sum_probs=112.7

Q ss_pred             CEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCC
Q 041908          569 MTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFN  648 (883)
Q Consensus       569 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~  648 (883)
                      +.++++++.++ .+|..+.  ++|+.|++++|++++..+..+..+++|+.|++++|++++..|..|..            
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------   78 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------   78 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence            34555555555 3444432  45666666666666555556666666666677666666554544322            


Q ss_pred             CcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCccccc
Q 041908          649 GFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIG  728 (883)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~  728 (883)
                                                                               +++|+.|||++|+|++..+..|.
T Consensus        79 ---------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~  101 (220)
T 2v9t_B           79 ---------------------------------------------------------LRSLNSLVLYGNKITELPKSLFE  101 (220)
T ss_dssp             ---------------------------------------------------------CSSCCEEECCSSCCCCCCTTTTT
T ss_pred             ---------------------------------------------------------CcCCCEEECCCCcCCccCHhHcc
Confidence                                                                     35667778888888755555578


Q ss_pred             ccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCC
Q 041908          729 YLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPN  797 (883)
Q Consensus       729 ~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~  797 (883)
                      .+++|++|+|++|++++..|..|+.+++|+.|||++|++++..|..+..+++|+.|++++|++.|.++.
T Consensus       102 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B          102 GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence            888888888888888888888888888999999999999888878888888899999999998886653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=4.6e-19  Score=193.62  Aligned_cols=198  Identities=18%  Similarity=0.173  Sum_probs=123.6

Q ss_pred             CCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCE-EEccCCc
Q 041908          112 TSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVE-LNLSWNK  190 (883)
Q Consensus       112 ~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~-L~Ls~n~  190 (883)
                      +++++|+|++|+++.  +|..+|.++++|++|+|++|++.+.+|.                ..+.+++++++ +.++.|+
T Consensus        30 ~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~----------------~~f~~L~~l~~~l~~~~N~   91 (350)
T 4ay9_X           30 RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEA----------------DVFSNLPKLHEIRIEKANN   91 (350)
T ss_dssp             TTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECT----------------TSBCSCTTCCEEEEEEETT
T ss_pred             CCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccCh----------------hHhhcchhhhhhhcccCCc
Confidence            456666777776664  6655677777777777777776655541                23566666654 4555677


Q ss_pred             CCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCC-cCccccChHhhhcCC-CCcEEEccCcccccC
Q 041908          191 LDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGN-NFQGSFSLSVLANHS-RLEVLQISRLQIETE  268 (883)
Q Consensus       191 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n-~l~g~~~~~~l~~l~-~L~~L~L~~~~~~~~  268 (883)
                      ++...|..|..+++|++|++++|+++ .+|...+....++..|++.++ ++. .++...+..+. .++.|++++|++...
T Consensus        92 l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~~i  169 (350)
T 4ay9_X           92 LLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQEI  169 (350)
T ss_dssp             CCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             ccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccccccCC
Confidence            77666677777777777777777777 455355556666777777553 343 45544454443 466666666666655


Q ss_pred             CCCCCCCccceEEEccc-CcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcc
Q 041908          269 NFPWLPRFQLKVLNLRR-CNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLF  333 (883)
Q Consensus       269 ~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~  333 (883)
                      ....+...+|+++++.+ |.++...+..|..+++|++||+++|+++ .+|...   +.+|+.|.+.
T Consensus       170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~---~~~L~~L~~l  231 (350)
T 4ay9_X          170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYG---LENLKKLRAR  231 (350)
T ss_dssp             CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSS---CTTCCEEECT
T ss_pred             ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhh---hccchHhhhc
Confidence            55555556777777765 4444333446677777777777777777 566532   3444444443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=1.3e-18  Score=177.63  Aligned_cols=162  Identities=31%  Similarity=0.406  Sum_probs=137.6

Q ss_pred             CCCCCccceeecCCCCCCCCCCcCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCE
Q 041908           63 TSDCCSWERIKCNVTTANYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEV  142 (883)
Q Consensus        63 ~~~cc~w~gv~C~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~  142 (883)
                      +...|+|++|.|...........-.++|++|+|++|.+.+..+..+..+++|++|+|++|.+..  +|...+..+++|++
T Consensus        15 ~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~--i~~~~~~~l~~L~~   92 (229)
T 3e6j_A           15 SQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA--LPVGVFDSLTQLTV   92 (229)
T ss_dssp             TTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCE
T ss_pred             CCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC--cChhhcccCCCcCE
Confidence            3678999999997643321112234889999999999999889999999999999999999976  77677899999999


Q ss_pred             EECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChh
Q 041908          143 LDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPIS  222 (883)
Q Consensus       143 L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~  222 (883)
                      |+|++|++.+..+                 ..+..+++|++|+|++|+++ .+|..+..+++|++|++++|+++ .+|..
T Consensus        93 L~Ls~N~l~~l~~-----------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~  153 (229)
T 3e6j_A           93 LDLGTNQLTVLPS-----------------AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHG  153 (229)
T ss_dssp             EECCSSCCCCCCT-----------------TTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTT
T ss_pred             EECCCCcCCccCh-----------------hHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHH
Confidence            9999999986655                 56788999999999999998 78889999999999999999999 66657


Q ss_pred             hhcCCCCCCEEeccCCcCccccC
Q 041908          223 VFANLTSLEYLSLSGNNFQGSFS  245 (883)
Q Consensus       223 ~~~~l~~L~~L~L~~n~l~g~~~  245 (883)
                      .+..+++|++|++++|.+.+..+
T Consensus       154 ~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          154 AFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             TTTTCTTCCEEECTTSCBCTTBG
T ss_pred             HHhCCCCCCEEEeeCCCccCCcc
Confidence            79999999999999999886553

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=2.3e-18  Score=175.78  Aligned_cols=157  Identities=23%  Similarity=0.263  Sum_probs=121.5

Q ss_pred             CCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCC
Q 041908          568 LMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPF  647 (883)
Q Consensus       568 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~  647 (883)
                      .+.++.++++++ .+|..+.  ++|++|+|++|++++..|..+..+++|+.|++++|++++..+..|..           
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~-----------   86 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS-----------   86 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-----------
Confidence            345666666665 4554443  66777777777777766777777777777777777775433332221           


Q ss_pred             CCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccc
Q 041908          648 NGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAI  727 (883)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l  727 (883)
                                                                                +++|+.|||++|+|++..+..|
T Consensus        87 ----------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~  108 (229)
T 3e6j_A           87 ----------------------------------------------------------LTQLTVLDLGTNQLTVLPSAVF  108 (229)
T ss_dssp             ----------------------------------------------------------CTTCCEEECCSSCCCCCCTTTT
T ss_pred             ----------------------------------------------------------CCCcCEEECCCCcCCccChhHh
Confidence                                                                      4677888999999987777778


Q ss_pred             cccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCC
Q 041908          728 GYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPN  797 (883)
Q Consensus       728 ~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~  797 (883)
                      ..+++|++|+|++|+|+ .+|..+..+++|+.|||++|+|++..+..+..+++|+.|++++|++.|.++.
T Consensus       109 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  177 (229)
T 3e6j_A          109 DRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD  177 (229)
T ss_dssp             TTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred             CcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence            89999999999999999 7888899999999999999999987778889999999999999999998773

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=5.8e-19  Score=193.64  Aligned_cols=179  Identities=25%  Similarity=0.213  Sum_probs=109.1

Q ss_pred             eeecccCccccccchhhhcCCCCCEEeccCCcCCccCCcccc-CCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCC
Q 041908          546 HLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLIN-EDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYN  624 (883)
Q Consensus       546 ~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N  624 (883)
                      .++++++.++ .+|..+.  ..++.|+|++|++++..+..+. .+++|++|+|++|++++..|..|..+++|+.|+|++|
T Consensus        22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            4444444444 3443332  2456666666666655555555 6666666666666666555566666666666666666


Q ss_pred             cCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccccccccc
Q 041908          625 LLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGG  704 (883)
Q Consensus       625 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  704 (883)
                      ++++..+..|..                                                                    
T Consensus        99 ~l~~~~~~~~~~--------------------------------------------------------------------  110 (361)
T 2xot_A           99 HLHTLDEFLFSD--------------------------------------------------------------------  110 (361)
T ss_dssp             CCCEECTTTTTT--------------------------------------------------------------------
T ss_pred             cCCcCCHHHhCC--------------------------------------------------------------------
Confidence            665433322211                                                                    


Q ss_pred             ccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccc---cCcCCCCEEECCCCcccccCCccccCCCC-
Q 041908          705 VLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSF---SNLKMIESMDLSYNKLRGQIPLELSELNY-  780 (883)
Q Consensus       705 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l---~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~-  780 (883)
                       +++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|   ..+++|+.|||++|+|++..+..+..++. 
T Consensus       111 -l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~  189 (361)
T 2xot_A          111 -LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW  189 (361)
T ss_dssp             -CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHH
T ss_pred             -CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHh
Confidence             3556677777777776666777777777777777777775444444   55777777777777777655556666665 


Q ss_pred             -CcEEEccCCcCcccCC
Q 041908          781 -LAIFNVSYNDLSGPTP  796 (883)
Q Consensus       781 -L~~l~ls~N~l~g~ip  796 (883)
                       ++.|++++|++.|.+.
T Consensus       190 ~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          190 VKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             HHTTEECCSSCEECCHH
T ss_pred             hcceEEecCCCccCCcC
Confidence             3667777777776543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=2.5e-18  Score=182.31  Aligned_cols=172  Identities=20%  Similarity=0.326  Sum_probs=112.0

Q ss_pred             ccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCE
Q 041908          539 NHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAI  618 (883)
Q Consensus       539 ~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~  618 (883)
                      ..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+  +..+++|++|++++|++++ + ..+..+++|+.
T Consensus        43 ~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~  116 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKS  116 (291)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCE
T ss_pred             hhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCE
Confidence            345566666666666653 33 35666677777777777665433  6666777777777777664 2 23666777777


Q ss_pred             EEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccc
Q 041908          619 VDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRY  698 (883)
Q Consensus       619 L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  698 (883)
                      |++++|++++. + .+                                                                
T Consensus       117 L~L~~n~i~~~-~-~l----------------------------------------------------------------  130 (291)
T 1h6t_A          117 LSLEHNGISDI-N-GL----------------------------------------------------------------  130 (291)
T ss_dssp             EECTTSCCCCC-G-GG----------------------------------------------------------------
T ss_pred             EECCCCcCCCC-h-hh----------------------------------------------------------------
Confidence            77777766542 1 11                                                                


Q ss_pred             ccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCC
Q 041908          699 ESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSEL  778 (883)
Q Consensus       699 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l  778 (883)
                           ..+++|+.|++++|++++.  ..++.+++|+.|+|++|++++..|  ++.+++|+.|++++|++++ +| .+..+
T Consensus       131 -----~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l  199 (291)
T 1h6t_A          131 -----VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGL  199 (291)
T ss_dssp             -----GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTC
T ss_pred             -----cCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccC
Confidence                 1145667777777777754  457777777777777777776554  7777777777777777775 33 36777


Q ss_pred             CCCcEEEccCCcCcc
Q 041908          779 NYLAIFNVSYNDLSG  793 (883)
Q Consensus       779 ~~L~~l~ls~N~l~g  793 (883)
                      ++|+.|++++|+++.
T Consensus       200 ~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          200 KNLDVLELFSQECLN  214 (291)
T ss_dssp             TTCSEEEEEEEEEEC
T ss_pred             CCCCEEECcCCcccC
Confidence            777777777777765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=2.2e-18  Score=174.64  Aligned_cols=156  Identities=21%  Similarity=0.225  Sum_probs=122.4

Q ss_pred             CeeecccCccccccchhhhcCCCCCEEeccCCcCCccCC-ccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCC
Q 041908          545 WHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIP-PLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISY  623 (883)
Q Consensus       545 ~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~  623 (883)
                      +.+++++|.++ .+|..+.  ..+++|++++|++++..| ..+..+++|++|+|++|++++..+..|..+++|+.|++++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            35666666665 3554432  346777777777776644 4467788888888888888877777788888888888888


Q ss_pred             CcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccc
Q 041908          624 NLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKG  703 (883)
Q Consensus       624 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  703 (883)
                      |++++..|..|..                                                                   
T Consensus        91 N~l~~~~~~~~~~-------------------------------------------------------------------  103 (220)
T 2v70_A           91 NRLENVQHKMFKG-------------------------------------------------------------------  103 (220)
T ss_dssp             SCCCCCCGGGGTT-------------------------------------------------------------------
T ss_pred             CccCccCHhHhcC-------------------------------------------------------------------
Confidence            8887655544422                                                                   


Q ss_pred             cccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCC
Q 041908          704 GVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIP  772 (883)
Q Consensus       704 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip  772 (883)
                        +++|++|+|++|+|++..|..|..+++|++|+|++|++++..|..|+.+++|+.|+|++|.+++..+
T Consensus       104 --l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          104 --LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             --CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             --CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence              4678889999999998889999999999999999999999999999999999999999999997655

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=5e-18  Score=171.99  Aligned_cols=154  Identities=23%  Similarity=0.236  Sum_probs=126.9

Q ss_pred             CeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCC
Q 041908          545 WHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYN  624 (883)
Q Consensus       545 ~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N  624 (883)
                      +.++++++.++ .+|..+.  ++|+.|++++|++++..+..+..+++|++|+|++|++++..|..|..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            45666666665 4555443  57888888888888777778888888999999999888888888899999999999999


Q ss_pred             cCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccccccccc
Q 041908          625 LLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGG  704 (883)
Q Consensus       625 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  704 (883)
                      +++...+..|..                                                                    
T Consensus        91 ~l~~l~~~~f~~--------------------------------------------------------------------  102 (220)
T 2v9t_B           91 KITELPKSLFEG--------------------------------------------------------------------  102 (220)
T ss_dssp             CCCCCCTTTTTT--------------------------------------------------------------------
T ss_pred             cCCccCHhHccC--------------------------------------------------------------------
Confidence            887443332221                                                                    


Q ss_pred             ccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCccccc
Q 041908          705 VLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQ  770 (883)
Q Consensus       705 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~  770 (883)
                       +++|+.|+|++|+|++..|..|+.+++|++|+|++|+|++..+..|..+++|+.|+|++|+++..
T Consensus       103 -l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          103 -LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             -CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             -CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence             56789999999999988899999999999999999999998888899999999999999999854

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=5.5e-18  Score=196.92  Aligned_cols=169  Identities=22%  Similarity=0.265  Sum_probs=123.8

Q ss_pred             CCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEec
Q 041908          446 TQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDI  525 (883)
Q Consensus       446 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  525 (883)
                      ..+..+.+..+.+....+  +..++.|+.|++++|.+.. +| .+..+++|+.|+|++|++++..+  +..+++|+.|+|
T Consensus        21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L   94 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred             HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence            345556677777665544  3457788888888888874 44 47888888888888888887555  778888888888


Q ss_pred             CCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCccccc
Q 041908          526 SENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGN  605 (883)
Q Consensus       526 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~  605 (883)
                      ++|.+.+. + .+..+++|+.|+|++|.+++ + +.+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|++.+.
T Consensus        95 s~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A           95 DENKIKDL-S-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             CSSCCCCC-T-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred             cCCCCCCC-h-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence            88888763 2 56777788888888888774 3 3577777888888888887754  5677777777777777777765


Q ss_pred             CchhhcCCCCCCEEEcCCCcCCC
Q 041908          606 IPQQLCHLRKIAIVDISYNLLDG  628 (883)
Q Consensus       606 ~p~~l~~l~~L~~L~ls~N~l~~  628 (883)
                      .|  +..+++|+.|+|++|++++
T Consensus       169 ~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          169 VP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCB
T ss_pred             hh--hccCCCCCEEECcCCCCCC
Confidence            55  7777777777777777654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.75  E-value=1.8e-18  Score=171.33  Aligned_cols=114  Identities=22%  Similarity=0.325  Sum_probs=90.4

Q ss_pred             cccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEE
Q 041908          706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFN  785 (883)
Q Consensus       706 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~  785 (883)
                      +++|+.|||++|+|++.+|..|+.+++|++|+|++|+|++..|..|+++++|++|||++|++++.+|..+..+++|++|+
T Consensus        53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (192)
T 1w8a_A           53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence            45677888888888888888888888899999999999888888888899999999999999988888888888999999


Q ss_pred             ccCCcCcccCCCCccCCCCCCcccCCCcCCCCCC
Q 041908          786 VSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPA  819 (883)
Q Consensus       786 ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~~  819 (883)
                      +++|+++|.++..+...++....+.++...|+.|
T Consensus       133 L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          133 LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             eCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence            9999999887754333333333455666667654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.75  E-value=1e-20  Score=218.76  Aligned_cols=77  Identities=19%  Similarity=0.213  Sum_probs=41.6

Q ss_pred             ccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCC-CccccCcCCCCEEECCCCcccccCCcc---ccCCCCCc
Q 041908          707 EYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSI-PRSFSNLKMIESMDLSYNKLRGQIPLE---LSELNYLA  782 (883)
Q Consensus       707 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-p~~l~~l~~L~~LdLs~N~Lsg~ip~~---l~~l~~L~  782 (883)
                      ++|+.|||++|+|++ +| .++.+++|++|+|++|+|++.+ |..++.+++|+.|||++|++++.+|..   +..+++|+
T Consensus       486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~  563 (567)
T 1dce_A          486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS  563 (567)
T ss_dssp             TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred             CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence            344555555555553 44 5555566666666666665554 555666666666666666665544321   12245555


Q ss_pred             EEE
Q 041908          783 IFN  785 (883)
Q Consensus       783 ~l~  785 (883)
                      .||
T Consensus       564 ~L~  566 (567)
T 1dce_A          564 SIL  566 (567)
T ss_dssp             EEE
T ss_pred             ccC
Confidence            554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=1.1e-17  Score=183.29  Aligned_cols=177  Identities=24%  Similarity=0.297  Sum_probs=144.7

Q ss_pred             CccceeecCCCCCC--CCCCcCCCCCCEEECCCCCCCCCCchhhc-CCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEE
Q 041908           67 CSWERIKCNVTTAN--YNNNGSLKQLKILNIGFNSFSESLVPLLT-SLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVL  143 (883)
Q Consensus        67 c~w~gv~C~~~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L  143 (883)
                      |.|..+.|......  +..+  .+.+++|+|++|.+.+..+..+. ++++|++|+|++|++++  ++...|.++++|++|
T Consensus        18 C~~~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~--i~~~~~~~l~~L~~L   93 (361)
T 2xot_A           18 CASNILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF--ISSEAFVPVPNLRYL   93 (361)
T ss_dssp             EETTEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEE
T ss_pred             ECCCEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc--cChhhccCCCCCCEE
Confidence            88999999754321  2222  35689999999999987777787 99999999999999987  665789999999999


Q ss_pred             ECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhh
Q 041908          144 DLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISV  223 (883)
Q Consensus       144 ~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~  223 (883)
                      +|++|++.+..+                 ..+..+++|++|+|++|++++..|..|.++++|++|+|++|+++ .+|...
T Consensus        94 ~Ls~N~l~~~~~-----------------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~  155 (361)
T 2xot_A           94 DLSSNHLHTLDE-----------------FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVEL  155 (361)
T ss_dssp             ECCSSCCCEECT-----------------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGG
T ss_pred             ECCCCcCCcCCH-----------------HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHH
Confidence            999999876554                 56888999999999999999888899999999999999999999 788566


Q ss_pred             h---cCCCCCCEEeccCCcCccccChHhhhcCCCC--cEEEccCcccc
Q 041908          224 F---ANLTSLEYLSLSGNNFQGSFSLSVLANHSRL--EVLQISRLQIE  266 (883)
Q Consensus       224 ~---~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L--~~L~L~~~~~~  266 (883)
                      |   ..+++|++|+|++|+++ .++...+..++.+  +.|++++|.+.
T Consensus       156 ~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          156 IKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             TC----CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             hcCcccCCcCCEEECCCCCCC-ccCHHHhhhccHhhcceEEecCCCcc
Confidence            6   67999999999999998 6777778777763  66666666543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.74  E-value=1.9e-20  Score=216.38  Aligned_cols=202  Identities=20%  Similarity=0.170  Sum_probs=148.1

Q ss_pred             CCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCc-------------CCCCCCccccCCCcccEEe-cCCCcCcCcc
Q 041908          469 APSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNS-------------LEGDVSVPLSNLQVARILD-ISENKLYGPL  534 (883)
Q Consensus       469 l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~~~~l~~l~~L~~L~-Ls~n~l~~~~  534 (883)
                      ++.|+.|++++|.+. .+|..++.+++|+.|++++|.             ..+.+|..+..+++|+.|+ ++.|.+    
T Consensus       348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~----  422 (567)
T 1dce_A          348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL----  422 (567)
T ss_dssp             TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH----
T ss_pred             CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc----
Confidence            445555555555554 455555555555555554432             3445555566666666666 444432    


Q ss_pred             ccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCC
Q 041908          535 EFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLR  614 (883)
Q Consensus       535 ~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~  614 (883)
                             ..|+.+.+++|.+++ +|.     ..|+.|+|++|++++ +|. ++.+++|+.|+|++|+++ .+|..++.++
T Consensus       423 -------~~L~~l~l~~n~i~~-l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  486 (567)
T 1dce_A          423 -------DDLRSKFLLENSVLK-MEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALR  486 (567)
T ss_dssp             -------HHHHHHHHHHHHHHH-HHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred             -------chhhhhhhhcccccc-cCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCC
Confidence                   245555666666653 222     359999999999996 676 999999999999999999 8899999999


Q ss_pred             CCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEee
Q 041908          615 KIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMA  694 (883)
Q Consensus       615 ~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  694 (883)
                      +|+.|+|++|++++ +| .+..                                                          
T Consensus       487 ~L~~L~Ls~N~l~~-lp-~l~~----------------------------------------------------------  506 (567)
T 1dce_A          487 CLEVLQASDNALEN-VD-GVAN----------------------------------------------------------  506 (567)
T ss_dssp             TCCEEECCSSCCCC-CG-GGTT----------------------------------------------------------
T ss_pred             CCCEEECCCCCCCC-Cc-ccCC----------------------------------------------------------
Confidence            99999999999986 55 3322                                                          


Q ss_pred             ccccccccccccccccEEEccCCcCcccC-cccccccccCCeeeCCCCcCCcCCCcc---ccCcCCCCEEEC
Q 041908          695 KNRYESYKGGVLEYMTGLDLSSNELTGEI-PSAIGYLQELHALNLSHNHLSGSIPRS---FSNLKMIESMDL  762 (883)
Q Consensus       695 ~~~~~~~~~~~l~~L~~LdLs~N~l~g~i-p~~l~~l~~L~~L~Ls~N~l~g~ip~~---l~~l~~L~~LdL  762 (883)
                                 +++|+.|||++|+|++.+ |..++.+++|+.|+|++|.+++.+|..   +..+++|+.||+
T Consensus       507 -----------l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          507 -----------LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             -----------CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             -----------CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence                       578899999999999887 999999999999999999999876632   345899999975

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=2.3e-17  Score=174.93  Aligned_cols=185  Identities=19%  Similarity=0.213  Sum_probs=95.5

Q ss_pred             EeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCc
Q 041908          402 LDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNM  481 (883)
Q Consensus       402 L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~  481 (883)
                      +.+..+.+.+..+.   ..+++|+.|++++|.+...  +.+..+++|++|++++|++++..+  +..+++|++|++++|.
T Consensus        29 ~~l~~~~~~~~~~~---~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~  101 (291)
T 1h6t_A           29 DNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK  101 (291)
T ss_dssp             HHTTCSCTTSEECH---HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             HHhcCCCcccccch---hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc
Confidence            34445554433232   2456667777776666543  235556666666666666665433  5556666666666666


Q ss_pred             cCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchh
Q 041908          482 LSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSA  561 (883)
Q Consensus       482 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~  561 (883)
                      +++ +| .+..+++|++|++++|++++.  ..+..+++|+.|++++|++++.  ..+..+++|+.|++++|++++..|  
T Consensus       102 l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--  173 (291)
T 1h6t_A          102 VKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--  173 (291)
T ss_dssp             CCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred             CCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--
Confidence            653 22 255566666666666665542  2345555555555555555443  234444455555555555543222  


Q ss_pred             hhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCccc
Q 041908          562 LFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQ  603 (883)
Q Consensus       562 ~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  603 (883)
                      +..+++|+.|++++|++++ +| .+..+++|+.|++++|+++
T Consensus       174 l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          174 LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred             hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence            4444455555555554443 22 2444444444444444444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.73  E-value=1.4e-18  Score=207.37  Aligned_cols=134  Identities=23%  Similarity=0.209  Sum_probs=43.0

Q ss_pred             CCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeec
Q 041908          470 PSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFL  549 (883)
Q Consensus       470 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L  549 (883)
                      +.++.|++.+|.+.. .+..     .|+.++|+.|.+.+              ++++.|.+. ..+..+..++.|+.|+|
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~-----~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~L  231 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQA-----LLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDL  231 (727)
T ss_dssp             ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred             CccceEEeeCCCCCc-chhh-----HhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEEC
Confidence            457788888887764 3332     33444455544432              122222222 22333444444555555


Q ss_pred             ccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCC
Q 041908          550 HNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLD  627 (883)
Q Consensus       550 ~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~  627 (883)
                      ++|.+. .+|..+..+++|++|+|++|+++ .+|..++.+++|++|+|++|+|+ .+|..++.+++|+.|+|++|.++
T Consensus       232 s~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~  306 (727)
T 4b8c_D          232 SNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT  306 (727)
T ss_dssp             TTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC
T ss_pred             CCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC
Confidence            555544 44444445555555555555555 44544555555555555555555 44555555555555555555543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=1e-17  Score=194.66  Aligned_cols=172  Identities=17%  Similarity=0.239  Sum_probs=89.2

Q ss_pred             cccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCC
Q 041908          394 GYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLH  473 (883)
Q Consensus       394 ~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  473 (883)
                      ..+++|+.|++++|.+. .++.  +..+++|+.|+|++|.+.+..+  +..+++|+.|+|++|.+.+. | .+..+++|+
T Consensus        40 ~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~  112 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLK  112 (605)
T ss_dssp             HHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCC
T ss_pred             hcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCCC
Confidence            34444444444444443 3332  2344444444444444444322  44455555555555555432 2 345555555


Q ss_pred             EEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCc
Q 041908          474 ILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNS  553 (883)
Q Consensus       474 ~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~  553 (883)
                      .|++++|.+.+ + ..+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|.
T Consensus       113 ~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          113 SLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             EEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence            55555555553 2 2355555666666666655543  345555566666666666555544  5555566666666666


Q ss_pred             cccccchhhhcCCCCCEEeccCCcCCc
Q 041908          554 LNGSIPSALFQSSQLMTLDLRDNEFSG  580 (883)
Q Consensus       554 l~~~~p~~~~~~~~L~~L~Ls~N~l~~  580 (883)
                      +++.  +.+..+++|+.|+|++|++++
T Consensus       187 i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          187 ISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             CCCC--hHHccCCCCCEEEccCCcCcC
Confidence            5532  245556666666666666554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=1.7e-17  Score=165.04  Aligned_cols=155  Identities=15%  Similarity=0.218  Sum_probs=106.8

Q ss_pred             hcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCccccccccccc
Q 041908          563 FQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWME  642 (883)
Q Consensus       563 ~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~  642 (883)
                      ..+++|+.|++++|.++ .+| .+..+++|++|++++|.++  .+..+..+++|+.|++++|++++..|..+..      
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------  110 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------  110 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence            44456666666666666 344 4666666666666666554  2345666777777777777766544433321      


Q ss_pred             CCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCccc
Q 041908          643 EGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGE  722 (883)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~  722 (883)
                                                                                     +++|+.|+|++|++++.
T Consensus       111 ---------------------------------------------------------------l~~L~~L~Ls~n~i~~~  127 (197)
T 4ezg_A          111 ---------------------------------------------------------------LTSLTLLDISHSAHDDS  127 (197)
T ss_dssp             ---------------------------------------------------------------CTTCCEEECCSSBCBGG
T ss_pred             ---------------------------------------------------------------CCCCCEEEecCCccCcH
Confidence                                                                           45677888888888877


Q ss_pred             CcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcc
Q 041908          723 IPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSG  793 (883)
Q Consensus       723 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g  793 (883)
                      .|..++.+++|++|+|++|.+.+.+| .++.+++|+.|++++|++++ +| .+..+++|+.|++++|++.+
T Consensus       128 ~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          128 ILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             GHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             hHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            88888888888888888887333556 58888888888888888886 34 67888888889988888765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=1.5e-17  Score=173.38  Aligned_cols=171  Identities=18%  Similarity=0.208  Sum_probs=128.4

Q ss_pred             cCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEE
Q 041908          540 HSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIV  619 (883)
Q Consensus       540 ~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L  619 (883)
                      .+.++..+++++|.+++ ++ .+..+++|+.|++++|+++. +| .+..+++|++|++++|++++..|  +..+++|+.|
T Consensus        17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            34456667777777763 33 46677788888888888773 44 67778888888888888875433  7788888888


Q ss_pred             EcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccc
Q 041908          620 DISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYE  699 (883)
Q Consensus       620 ~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  699 (883)
                      ++++|++++ +|..                                                                  
T Consensus        91 ~L~~N~l~~-l~~~------------------------------------------------------------------  103 (263)
T 1xeu_A           91 SVNRNRLKN-LNGI------------------------------------------------------------------  103 (263)
T ss_dssp             ECCSSCCSC-CTTC------------------------------------------------------------------
T ss_pred             ECCCCccCC-cCcc------------------------------------------------------------------
Confidence            888888764 2210                                                                  


Q ss_pred             cccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCC
Q 041908          700 SYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELN  779 (883)
Q Consensus       700 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~  779 (883)
                          . .++|+.|+|++|++++ +| .++.+++|+.|+|++|++++. | .++.+++|+.|||++|++++.  ..+..++
T Consensus       104 ----~-~~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~  172 (263)
T 1xeu_A          104 ----P-SACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLK  172 (263)
T ss_dssp             ----C-CSSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCC
T ss_pred             ----c-cCcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCC
Confidence                0 1457888899998885 44 588888999999999998865 4 688889999999999999876  6788888


Q ss_pred             CCcEEEccCCcCccc
Q 041908          780 YLAIFNVSYNDLSGP  794 (883)
Q Consensus       780 ~L~~l~ls~N~l~g~  794 (883)
                      +|+.|++++|++++.
T Consensus       173 ~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          173 KVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CCCEEEEEEEEEECC
T ss_pred             CCCEEeCCCCcccCC
Confidence            899999999988875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=3.8e-17  Score=161.68  Aligned_cols=156  Identities=23%  Similarity=0.303  Sum_probs=110.9

Q ss_pred             CEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCch-hhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCC
Q 041908          569 MTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQ-QLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPF  647 (883)
Q Consensus       569 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~-~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~  647 (883)
                      +++++++|+++ .+|..+..  +|++|++++|++++..+. .+..+++|++|++++|++++..|..|..           
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----------   76 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-----------   76 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-----------
Confidence            56677777765 45654432  677777777777755553 3777778888888888877766655432           


Q ss_pred             CCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccc
Q 041908          648 NGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAI  727 (883)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l  727 (883)
                                                                                +++|+.|||++|+|++..|..|
T Consensus        77 ----------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~   98 (192)
T 1w8a_A           77 ----------------------------------------------------------ASHIQELQLGENKIKEISNKMF   98 (192)
T ss_dssp             ----------------------------------------------------------CTTCCEEECCSCCCCEECSSSS
T ss_pred             ----------------------------------------------------------cccCCEEECCCCcCCccCHHHh
Confidence                                                                      4567888888888888888888


Q ss_pred             cccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCC
Q 041908          728 GYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPN  797 (883)
Q Consensus       728 ~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~  797 (883)
                      +++++|++|+|++|++++.+|..|+.+++|++|||++|++++..+...- ...++...+..+...|..|.
T Consensus        99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~-~~~l~~~~~~~~~~~C~~P~  167 (192)
T 1w8a_A           99 LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSST
T ss_pred             cCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHH-HHHHHHcCCCCCCCCCCCCh
Confidence            8899999999999999998899999999999999999999887653210 01122234445555555554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=4.2e-18  Score=203.20  Aligned_cols=166  Identities=18%  Similarity=0.213  Sum_probs=91.1

Q ss_pred             CCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEe
Q 041908          445 MTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILD  524 (883)
Q Consensus       445 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  524 (883)
                      .+.++.|+|.+|.+... +.     ..|+.++|+.|.+.+.              ++..|.+. ..+..+..++.|+.|+
T Consensus       172 ~~~~~~l~L~~n~~~~~-~~-----~~l~~l~Ls~~~i~~~--------------~~~~n~~~-~~~~~~~~l~~L~~L~  230 (727)
T 4b8c_D          172 TPLTPKIELFANGKDEA-NQ-----ALLQHKKLSQYSIDED--------------DDIENRMV-MPKDSKYDDQLWHALD  230 (727)
T ss_dssp             -----------------------------------------------------------------------CCCCCCEEE
T ss_pred             CCccceEEeeCCCCCcc-hh-----hHhhcCccCcccccCc--------------ccccccee-cChhhhccCCCCcEEE
Confidence            35678899999888753 32     2356667776665532              23334443 4455666777777777


Q ss_pred             cCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccc
Q 041908          525 ISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQG  604 (883)
Q Consensus       525 Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g  604 (883)
                      |++|.+. .+|..+..+++|++|+|++|.++ .+|..+.++++|++|+|++|+|+ .+|..++.+++|++|+|++|.++ 
T Consensus       231 Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-  306 (727)
T 4b8c_D          231 LSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-  306 (727)
T ss_dssp             CTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-
T ss_pred             CCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-
Confidence            7777776 44545557778888888888887 77888888888888888888888 67888888888888888888886 


Q ss_pred             cCchhhcCCCCCCEEEcCCCcCCCCCCcccc
Q 041908          605 NIPQQLCHLRKIAIVDISYNLLDGSIPSCFT  635 (883)
Q Consensus       605 ~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~  635 (883)
                      .+|..|+.+++|+.|+|++|++++.+|..+.
T Consensus       307 ~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~  337 (727)
T 4b8c_D          307 TLPWEFGNLCNLQFLGVEGNPLEKQFLKILT  337 (727)
T ss_dssp             CCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred             ccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence            6787788888888888888888877776553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=1.5e-16  Score=158.32  Aligned_cols=151  Identities=15%  Similarity=0.130  Sum_probs=84.2

Q ss_pred             CCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeec
Q 041908          470 PSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFL  549 (883)
Q Consensus       470 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L  549 (883)
                      ++|++|++++|.+. .+| .+..+++|++|++++|.++.  +..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus        44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            44445555555444 333 34445555555555554332  224555555555555555555555555555666666666


Q ss_pred             ccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCC
Q 041908          550 HNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLD  627 (883)
Q Consensus       550 ~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~  627 (883)
                      ++|++++..|..+..+++|++|++++|++.+.+| .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++.
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence            6666665556666666666666666666222344 46666666666666666664 33 5666677777777777654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=7.7e-17  Score=168.02  Aligned_cols=168  Identities=22%  Similarity=0.279  Sum_probs=92.6

Q ss_pred             CCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecC
Q 041908          447 QLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDIS  526 (883)
Q Consensus       447 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  526 (883)
                      ++..+++++|.+++..  .+..+++|++|++++|.++ .+| .+..+++|++|++++|++++..+  +..+++|+.|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            3444445555544322  2344455555555555554 233 35555555555555555554333  5555555555555


Q ss_pred             CCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccC
Q 041908          527 ENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNI  606 (883)
Q Consensus       527 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~  606 (883)
                      +|++++..+  +.. ++|+.|++++|++++ ++ .+..+++|+.|++++|++++. | .+..+++|++|++++|++++. 
T Consensus        94 ~N~l~~l~~--~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-  165 (263)
T 1xeu_A           94 RNRLKNLNG--IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-  165 (263)
T ss_dssp             SSCCSCCTT--CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred             CCccCCcCc--ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence            555554322  111 566666666666654 22 456666666666666666643 2 456666666666666666654 


Q ss_pred             chhhcCCCCCCEEEcCCCcCCCC
Q 041908          607 PQQLCHLRKIAIVDISYNLLDGS  629 (883)
Q Consensus       607 p~~l~~l~~L~~L~ls~N~l~~~  629 (883)
                       ..+..+++|+.|++++|++++.
T Consensus       166 -~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          166 -GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -TTSTTCCCCCEEEEEEEEEECC
T ss_pred             -HHhccCCCCCEEeCCCCcccCC
Confidence             4566666666666666666544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.65  E-value=1.9e-16  Score=156.50  Aligned_cols=93  Identities=24%  Similarity=0.257  Sum_probs=78.9

Q ss_pred             cccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEE
Q 041908          706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFN  785 (883)
Q Consensus       706 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~  785 (883)
                      +++|+.|||++|+|++..|..|.++++|++|+|++|+|++..|..|+.+++|+.|+|++|++++..+..+..+++|+.|+
T Consensus        53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (193)
T 2wfh_A           53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA  132 (193)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence            45667788888888877777888899999999999999988888899999999999999999977777788999999999


Q ss_pred             ccCCcCcccCCCC
Q 041908          786 VSYNDLSGPTPNT  798 (883)
Q Consensus       786 ls~N~l~g~ip~~  798 (883)
                      +++|++.|.+...
T Consensus       133 L~~N~~~C~c~l~  145 (193)
T 2wfh_A          133 IGANPLYCDCNMQ  145 (193)
T ss_dssp             CCSSCEECSGGGH
T ss_pred             eCCCCeecCCcCH
Confidence            9999998866543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=1.8e-16  Score=171.48  Aligned_cols=285  Identities=12%  Similarity=0.062  Sum_probs=127.1

Q ss_pred             CCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcC-------
Q 041908          299 QYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMI-------  371 (883)
Q Consensus       299 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~-------  371 (883)
                      +.+++.|.++++- .+.-...+...+++|+.|+|++|.+.........++.+..+.+..+    .+|+..+..       
T Consensus        24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~   98 (329)
T 3sb4_A           24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTK   98 (329)
T ss_dssp             HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEE
T ss_pred             hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhccccccccc
Confidence            4466777776542 1111122222267777777777777632222222222333444433    233333333       


Q ss_pred             -CCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcc----cCCcCcccccCCC
Q 041908          372 -LPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNY----FGGQIFPKYMSMT  446 (883)
Q Consensus       372 -l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~----l~~~~~~~~~~l~  446 (883)
                       +++|+.|++.+ .++..-+..|.++++|+.+++++|.+. .++...|.++.++..+....+.    ........|.++.
T Consensus        99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~  176 (329)
T 3sb4_A           99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE  176 (329)
T ss_dssp             ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred             ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence             66666666666 555444455666666666666666665 5555555555555555444321    1111122233333


Q ss_pred             CCC-eEEccCcccCccccccc----cCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCccc
Q 041908          447 QLA-WLYLNDNQFTGRLEEGL----LNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVAR  521 (883)
Q Consensus       447 ~L~-~L~L~~n~l~~~~~~~~----~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  521 (883)
                      .|+ .+.+....   .++..+    ....+++.+.+.++-...........+++|+++++++|+++...+..|.+|++|+
T Consensus       177 ~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~  253 (329)
T 3sb4_A          177 PLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL  253 (329)
T ss_dssp             CCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred             ccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence            443 22222211   111110    1123344444433311100111111245555555555555544444455555555


Q ss_pred             EEecCCCcCcCccccccccCCCcC-eeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEE
Q 041908          522 ILDISENKLYGPLEFSFNHSSSLW-HLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRAL  595 (883)
Q Consensus       522 ~L~Ls~n~l~~~~~~~~~~~~~L~-~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  595 (883)
                      .+++.+| +....+.+|.++++|+ .+++.+ +++..-+.+|.+|++|+.+++++|+++...+..|.++++|+.+
T Consensus       254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred             EEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence            5555554 4333344444554454 555444 3332333444444444444444444443333444444444444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=1.4e-15  Score=146.94  Aligned_cols=88  Identities=23%  Similarity=0.224  Sum_probs=61.1

Q ss_pred             cccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCC-CccccCcCCCCEEECCCCcccccCC---ccccCCCCC
Q 041908          706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSI-PRSFSNLKMIESMDLSYNKLRGQIP---LELSELNYL  781 (883)
Q Consensus       706 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-p~~l~~l~~L~~LdLs~N~Lsg~ip---~~l~~l~~L  781 (883)
                      +++|+.|||++|++++.+|..++.+++|++|+|++|++++.. +..++.+++|+.||+++|++++..+   ..+..+++|
T Consensus        70 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L  149 (168)
T 2ell_A           70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL  149 (168)
T ss_dssp             CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred             CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence            355666777777777666666666777777777777777542 2667777777777777777776554   466777777


Q ss_pred             cEEEccCCcCcc
Q 041908          782 AIFNVSYNDLSG  793 (883)
Q Consensus       782 ~~l~ls~N~l~g  793 (883)
                      ++|++++|.+..
T Consensus       150 ~~L~l~~n~~~~  161 (168)
T 2ell_A          150 TYLDGYDREDQE  161 (168)
T ss_dssp             CEETTEETTSCB
T ss_pred             cEecCCCCChhh
Confidence            777777777654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=9.5e-16  Score=144.91  Aligned_cols=82  Identities=22%  Similarity=0.244  Sum_probs=59.0

Q ss_pred             cccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcC-CCccccCcCCCCEEECCCCcccccCC---ccccCCCCC
Q 041908          706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGS-IPRSFSNLKMIESMDLSYNKLRGQIP---LELSELNYL  781 (883)
Q Consensus       706 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~LdLs~N~Lsg~ip---~~l~~l~~L  781 (883)
                      +++|+.|||++|++++.+|..++.+++|++|+|++|++++. .|..++.+++|++||+++|++++..+   ..+..+++|
T Consensus        63 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L  142 (149)
T 2je0_A           63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL  142 (149)
T ss_dssp             CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred             CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence            45566777777777766777777777777777777777763 34677777777777777777776655   467777777


Q ss_pred             cEEEcc
Q 041908          782 AIFNVS  787 (883)
Q Consensus       782 ~~l~ls  787 (883)
                      +.||++
T Consensus       143 ~~L~l~  148 (149)
T 2je0_A          143 TYLDGY  148 (149)
T ss_dssp             CEETTB
T ss_pred             ccccCC
Confidence            777776

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=7.7e-15  Score=143.12  Aligned_cols=114  Identities=34%  Similarity=0.374  Sum_probs=75.7

Q ss_pred             CCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcC
Q 041908          112 TSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKL  191 (883)
Q Consensus       112 ~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l  191 (883)
                      ++|++|++++|++.+  +|...+.++++|++|++++|.+.+..+                 ..+..+++|++|++++|++
T Consensus        28 ~~l~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------------~~~~~l~~L~~L~l~~N~l   88 (177)
T 2o6r_A           28 SSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSQNQIQSLPD-----------------GVFDKLTKLTILYLHENKL   88 (177)
T ss_dssp             TTCSEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCCCCT-----------------TTTTTCTTCCEEECCSSCC
T ss_pred             CCCcEEEeCCCcccE--eCHHHhcCcccccEEECCCCcceEeCh-----------------hHccCCCccCEEECCCCCc
Confidence            455666666666554  444455666666666666666654433                 4456677777777777777


Q ss_pred             CCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccC
Q 041908          192 DGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFS  245 (883)
Q Consensus       192 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~  245 (883)
                      ++..+..+..+++|++|++++|+++ .+|...+..+++|++|++++|.+.+..+
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           89 QSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            7665666677777777777777777 5664556777778888888887776554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=4.1e-15  Score=145.08  Aligned_cols=92  Identities=23%  Similarity=0.255  Sum_probs=75.9

Q ss_pred             cccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEE
Q 041908          706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFN  785 (883)
Q Consensus       706 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~  785 (883)
                      +++|+.|+|++|++++..+..++.+++|++|+|++|++++..+..++.+++|++|||++|++++..+..+..+++|+.|+
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  130 (177)
T 2o6r_A           51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW  130 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence            35677788888888766666678888899999999999887777788899999999999999876666678888999999


Q ss_pred             ccCCcCcccCCC
Q 041908          786 VSYNDLSGPTPN  797 (883)
Q Consensus       786 ls~N~l~g~ip~  797 (883)
                      +++|+++|.+|.
T Consensus       131 l~~N~~~~~~~~  142 (177)
T 2o6r_A          131 LHTNPWDCSCPR  142 (177)
T ss_dssp             CCSSCBCCCHHH
T ss_pred             ecCCCeeccCcc
Confidence            999999988774

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=1.2e-14  Score=143.61  Aligned_cols=129  Identities=22%  Similarity=0.355  Sum_probs=105.7

Q ss_pred             CEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCC
Q 041908          569 MTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFN  648 (883)
Q Consensus       569 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~  648 (883)
                      +++++++|+++ .+|..+.  ++|++|++++|+++ .+|..+..+++|+.|++++|.+++..|..|..            
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~------------   76 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN------------   76 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT------------
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccC------------
Confidence            56777777777 4565443  57888888888887 67788888888888888888887665554432            


Q ss_pred             CcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCccccc
Q 041908          649 GFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIG  728 (883)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~  728 (883)
                                                                               +++|+.|||++|+|++..|..|+
T Consensus        77 ---------------------------------------------------------l~~L~~L~Ls~N~l~~i~~~~f~   99 (193)
T 2wfh_A           77 ---------------------------------------------------------MTQLLTLILSYNRLRCIPPRTFD   99 (193)
T ss_dssp             ---------------------------------------------------------CTTCCEEECCSSCCCBCCTTTTT
T ss_pred             ---------------------------------------------------------CCCCCEEECCCCccCEeCHHHhC
Confidence                                                                     46788999999999988888899


Q ss_pred             ccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCccccc
Q 041908          729 YLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQ  770 (883)
Q Consensus       729 ~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~  770 (883)
                      .+++|++|+|++|+|++..+..|..+++|+.|+|++|.+...
T Consensus       100 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A          100 GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            999999999999999987777899999999999999999864

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=5e-15  Score=139.90  Aligned_cols=128  Identities=16%  Similarity=0.149  Sum_probs=83.7

Q ss_pred             CCCCEEECCCCcCC-CCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEe
Q 041908          494 SNLDVLLMSRNSLE-GDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLD  572 (883)
Q Consensus       494 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~  572 (883)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            34555555555554 44444455555555555555555544  4455666777777777777666677777777778888


Q ss_pred             ccCCcCCcc-CCccccCCCCCcEEEccCCcccccCc---hhhcCCCCCCEEEcCC
Q 041908          573 LRDNEFSGN-IPPLINEDSNLRALLLRGNNLQGNIP---QQLCHLRKIAIVDISY  623 (883)
Q Consensus       573 Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~g~~p---~~l~~l~~L~~L~ls~  623 (883)
                      +++|++++. .+..+..+++|++|++++|++++..+   ..+..+++|+.||+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            877777753 34667777888888888888876555   4677788888887763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=8.3e-15  Score=141.51  Aligned_cols=132  Identities=14%  Similarity=0.088  Sum_probs=97.4

Q ss_pred             CCCCEEECCCCcCC-CCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEe
Q 041908          494 SNLDVLLMSRNSLE-GDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLD  572 (883)
Q Consensus       494 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~  572 (883)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45666666666665 45555566666666677776666655  4566777888888888888776777777788888888


Q ss_pred             ccCCcCCccC-CccccCCCCCcEEEccCCcccccCc---hhhcCCCCCCEEEcCCCcCC
Q 041908          573 LRDNEFSGNI-PPLINEDSNLRALLLRGNNLQGNIP---QQLCHLRKIAIVDISYNLLD  627 (883)
Q Consensus       573 Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~g~~p---~~l~~l~~L~~L~ls~N~l~  627 (883)
                      +++|++++.. +..+..+++|++|++++|++++..+   ..+..+++|+.|++++|.+.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            8888888642 2677888888888888888886554   47888888888888888775

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=1.7e-15  Score=163.71  Aligned_cols=284  Identities=15%  Similarity=0.134  Sum_probs=181.4

Q ss_pred             CCCCcEEEcccccccc-cccCCCCCCCccEEEccCCccc--cccchhhhcCCCCCcEEeCCCCcCCCCCCccccc-----
Q 041908          324 NTKLEFLFLFNNFLKG-LLHLPDSKRDLLHLVISNNNFI--GMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGY-----  395 (883)
Q Consensus       324 l~~L~~L~L~~n~l~~-~~~~~~~~~~L~~L~ls~n~l~--~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-----  395 (883)
                      +++++.|.++++--.. +..+...+++|++|+|++|++.  ...+..    ++.++.+.+..|.+.   +..|.+     
T Consensus        24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~----~~~~~~~~~~~~~I~---~~aF~~~~~~~   96 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT----YPNGKFYIYMANFVP---AYAFSNVVNGV   96 (329)
T ss_dssp             HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS----SGGGCCEEECTTEEC---TTTTEEEETTE
T ss_pred             hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccc----ccccccccccccccC---HHHhccccccc
Confidence            4567888887642110 1111112677888888888776  221111    233444444444322   234555     


Q ss_pred             ---cCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCccc----CccccccccC
Q 041908          396 ---TVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQF----TGRLEEGLLN  468 (883)
Q Consensus       396 ---l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~  468 (883)
                         +++|+.|++.+ .++ .|+...|.+|++|+.+++++|.+....+..|..+.++..+.+..+..    .......|.+
T Consensus        97 ~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~  174 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE  174 (329)
T ss_dssp             EEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred             ccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence               78888888877 666 67777777788888888888777766666676666666665544221    1222334445


Q ss_pred             CCCCC-EEEccCCccCCCcchhhh----CCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCC
Q 041908          469 APSLH-ILDVSNNMLSGQLPHWVG----NFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSS  543 (883)
Q Consensus       469 l~~L~-~L~ls~n~l~~~~p~~~~----~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  543 (883)
                      +..|+ .+.+...   +.++..+.    ...+++.+.+.++-...........+++|+.+++++|+++...+.+|.++++
T Consensus       175 ~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~  251 (329)
T 3sb4_A          175 GEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY  251 (329)
T ss_dssp             SCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred             ccccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC
Confidence            55555 4444332   22333222    2345666666554211111111123788999999999888777788999999


Q ss_pred             cCeeecccCccccccchhhhcCCCCC-EEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEc
Q 041908          544 LWHLFLHNNSLNGSIPSALFQSSQLM-TLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDI  621 (883)
Q Consensus       544 L~~L~L~~n~l~~~~p~~~~~~~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~l  621 (883)
                      |+++++.+| ++..-+.+|.+|++|+ .+++.+ +++...+..|.+|++|+.+++++|+++..-+.+|.++++|+.++.
T Consensus       252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            999999888 6655567788999999 999988 777666788999999999999999998766778999999988763

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.54  E-value=1.5e-16  Score=158.48  Aligned_cols=154  Identities=21%  Similarity=0.296  Sum_probs=100.2

Q ss_pred             hcCCCCCEEeccCCcCCccCCc------cccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCccccc
Q 041908          563 FQSSQLMTLDLRDNEFSGNIPP------LINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTN  636 (883)
Q Consensus       563 ~~~~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~  636 (883)
                      .....++.++++.+.++|.+|.      .+..+++|++|++++|++++ +| .+..+++|+.|++++|.++ .+|..+. 
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~-   90 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA-   90 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH-
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh-
Confidence            3344555555555555555444      55666666666666666664 45 5666666666666666665 3332211 


Q ss_pred             ccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccC
Q 041908          637 IWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSS  716 (883)
Q Consensus       637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~  716 (883)
                                                                                          .+++|+.|||++
T Consensus        91 --------------------------------------------------------------------~~~~L~~L~L~~  102 (198)
T 1ds9_A           91 --------------------------------------------------------------------VADTLEELWISY  102 (198)
T ss_dssp             --------------------------------------------------------------------HHHHCSEEEEEE
T ss_pred             --------------------------------------------------------------------cCCcCCEEECcC
Confidence                                                                                135677788888


Q ss_pred             CcCcccCcccccccccCCeeeCCCCcCCcCCC-ccccCcCCCCEEECCCCcccccCCcc----------ccCCCCCcEEE
Q 041908          717 NELTGEIPSAIGYLQELHALNLSHNHLSGSIP-RSFSNLKMIESMDLSYNKLRGQIPLE----------LSELNYLAIFN  785 (883)
Q Consensus       717 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip-~~l~~l~~L~~LdLs~N~Lsg~ip~~----------l~~l~~L~~l~  785 (883)
                      |++++ +| .++.+++|++|+|++|++++..+ ..++.+++|++|++++|++++.+|..          +..+++|+.||
T Consensus       103 N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          103 NQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            88875 45 57788888888888888875433 46788888888888888888776653          67778888776


Q ss_pred             ccCCcCc
Q 041908          786 VSYNDLS  792 (883)
Q Consensus       786 ls~N~l~  792 (883)
                        +|.++
T Consensus       181 --~~~i~  185 (198)
T 1ds9_A          181 --GMPVD  185 (198)
T ss_dssp             --CGGGT
T ss_pred             --CcccC
Confidence              45444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.49  E-value=5.2e-16  Score=154.47  Aligned_cols=155  Identities=22%  Similarity=0.209  Sum_probs=125.3

Q ss_pred             ccCCCcCeeecccCccccccch------hhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcC
Q 041908          539 NHSSSLWHLFLHNNSLNGSIPS------ALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCH  612 (883)
Q Consensus       539 ~~~~~L~~L~L~~n~l~~~~p~------~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~  612 (883)
                      .....++.++++.+.++|.+|.      .+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+..
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~   91 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV   91 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence            3445666666666666666665      89999999999999999986 67 8888999999999999998 68888888


Q ss_pred             CCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEE
Q 041908          613 LRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKF  692 (883)
Q Consensus       613 l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  692 (883)
                      +++|+.|++++|++++ +| .+.                                                         
T Consensus        92 ~~~L~~L~L~~N~l~~-l~-~~~---------------------------------------------------------  112 (198)
T 1ds9_A           92 ADTLEELWISYNQIAS-LS-GIE---------------------------------------------------------  112 (198)
T ss_dssp             HHHCSEEEEEEEECCC-HH-HHH---------------------------------------------------------
T ss_pred             CCcCCEEECcCCcCCc-CC-ccc---------------------------------------------------------
Confidence            8999999999999875 22 111                                                         


Q ss_pred             eeccccccccccccccccEEEccCCcCcccCc-ccccccccCCeeeCCCCcCCcCCCcc----------ccCcCCCCEEE
Q 041908          693 MAKNRYESYKGGVLEYMTGLDLSSNELTGEIP-SAIGYLQELHALNLSHNHLSGSIPRS----------FSNLKMIESMD  761 (883)
Q Consensus       693 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~----------l~~l~~L~~Ld  761 (883)
                                  .+++|+.|||++|++++..+ ..+..+++|++|++++|.+++.+|..          +..+++|+.||
T Consensus       113 ------------~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          113 ------------KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             ------------HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             ------------cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence                        14678999999999985433 47899999999999999999887764          88999999998


Q ss_pred             CCCCcccc
Q 041908          762 LSYNKLRG  769 (883)
Q Consensus       762 Ls~N~Lsg  769 (883)
                        +|.++.
T Consensus       181 --~~~i~~  186 (198)
T 1ds9_A          181 --GMPVDV  186 (198)
T ss_dssp             --CGGGTT
T ss_pred             --CcccCH
Confidence              777764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.48  E-value=1.1e-12  Score=144.73  Aligned_cols=223  Identities=10%  Similarity=0.089  Sum_probs=109.0

Q ss_pred             CCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEc
Q 041908          374 ELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYL  453 (883)
Q Consensus       374 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  453 (883)
                      +|+.+.+.. .++..-+..|.++++|+.++++.|+++ .++...|. +.+|+.+.+..+ +...-...|.++++|+.+++
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence            455555554 344333445556666666666666555 55555443 455555555532 43333444555555555555


Q ss_pred             cCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCc
Q 041908          454 NDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGP  533 (883)
Q Consensus       454 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  533 (883)
                      ..+ ++..-..+|.+ .+|+.+.+. +.++..-..+|.+|++|+.+.+.+|.+..                   +.....
T Consensus       234 ~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~-------------------~~~~~I  291 (401)
T 4fdw_A          234 PEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFND-------------------DPEAMI  291 (401)
T ss_dssp             CTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCC-------------------CTTCEE
T ss_pred             CCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccC-------------------CcccEE
Confidence            543 33333334444 455666553 23332334455555555555555544430                   000012


Q ss_pred             cccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCC
Q 041908          534 LEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHL  613 (883)
Q Consensus       534 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l  613 (883)
                      .+.+|.+|++|+.+.+.+ .++..-..+|.+|++|+.++|..| ++..-+.+|.++ +|+.+++.+|.+....+..|.++
T Consensus       292 ~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~  368 (401)
T 4fdw_A          292 HPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF  368 (401)
T ss_dssp             CTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred             CHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence            233444555555555542 243333344555555555555433 443444555555 66666666665554444455555


Q ss_pred             C-CCCEEEcCCCc
Q 041908          614 R-KIAIVDISYNL  625 (883)
Q Consensus       614 ~-~L~~L~ls~N~  625 (883)
                      + .++.+.+..+.
T Consensus       369 ~~~l~~l~vp~~~  381 (401)
T 4fdw_A          369 PDDITVIRVPAES  381 (401)
T ss_dssp             CTTCCEEEECGGG
T ss_pred             CCCccEEEeCHHH
Confidence            3 45566655543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.48  E-value=7.9e-13  Score=145.89  Aligned_cols=250  Identities=8%  Similarity=0.010  Sum_probs=164.4

Q ss_pred             CCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEE
Q 041908          373 PELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLY  452 (883)
Q Consensus       373 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  452 (883)
                      ..++.+.+.++ ++..-...|.++ +|+.+.+..+ +. .|+...|.++ +|+.+.+.. .+.......|.++++|+.++
T Consensus       113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            44444444432 222223334443 4555655544 33 4555545443 466666654 44444445566666677777


Q ss_pred             ccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcC
Q 041908          453 LNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYG  532 (883)
Q Consensus       453 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  532 (883)
                      +.+|+++......|. +.+|+.+.+..+ +...-..+|.+|++|+.+++..+ ++......|.+ .+|+.+.+. +.+..
T Consensus       187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~  261 (401)
T 4fdw_A          187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTN  261 (401)
T ss_dssp             CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCE
T ss_pred             cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccE
Confidence            766666654444454 467777777644 44444566777777777777764 44444555666 678888883 44655


Q ss_pred             ccccccccCCCcCeeecccCccc-----cccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCc
Q 041908          533 PLEFSFNHSSSLWHLFLHNNSLN-----GSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIP  607 (883)
Q Consensus       533 ~~~~~~~~~~~L~~L~L~~n~l~-----~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p  607 (883)
                      ....+|.+|++|+.+++.+|.+.     ..-+..|.+|++|+.+++. +.++..-...|.+|++|+.+.+..| ++..-+
T Consensus       262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~  339 (401)
T 4fdw_A          262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINF  339 (401)
T ss_dssp             ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred             EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence            56678888888999988887764     3446789999999999999 4577666788999999999999665 665557


Q ss_pred             hhhcCCCCCCEEEcCCCcCCCCCCccccc
Q 041908          608 QQLCHLRKIAIVDISYNLLDGSIPSCFTN  636 (883)
Q Consensus       608 ~~l~~l~~L~~L~ls~N~l~~~~p~~~~~  636 (883)
                      .+|.++ +|+.+++++|.+....+..|..
T Consensus       340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~  367 (401)
T 4fdw_A          340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYG  367 (401)
T ss_dssp             TSSSSS-CCCEEEECCSSCCBCCCSSCCC
T ss_pred             HhCCCC-CCCEEEEcCCCCcccccccccC
Confidence            789999 9999999999876554444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=1.4e-13  Score=132.90  Aligned_cols=108  Identities=19%  Similarity=0.189  Sum_probs=96.6

Q ss_pred             EEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCccccc
Q 041908          691 KFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQ  770 (883)
Q Consensus       691 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~  770 (883)
                      ..+..+.+..++....+.++.|||++|+|++..|..|+.+++|++|+|++|+|++..|..|+.+++|++|||++|+|++.
T Consensus        14 l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~   93 (170)
T 3g39_A           14 VDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI   93 (170)
T ss_dssp             EECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             EEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe
Confidence            34455666667766678999999999999988899999999999999999999988888899999999999999999988


Q ss_pred             CCccccCCCCCcEEEccCCcCcccCCCC
Q 041908          771 IPLELSELNYLAIFNVSYNDLSGPTPNT  798 (883)
Q Consensus       771 ip~~l~~l~~L~~l~ls~N~l~g~ip~~  798 (883)
                      .|..+..+++|+.|++++|+++|.++..
T Consensus        94 ~~~~~~~l~~L~~L~L~~N~~~c~c~~l  121 (170)
T 3g39_A           94 PRGAFDNLKSLTHIWLLNNPWDCACSDI  121 (170)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCTTBGGG
T ss_pred             CHHHhcCCCCCCEEEeCCCCCCCCchhH
Confidence            8888999999999999999999988744

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.44  E-value=2.7e-12  Score=142.30  Aligned_cols=142  Identities=14%  Similarity=0.066  Sum_probs=78.7

Q ss_pred             CCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeE
Q 041908          372 LPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWL  451 (883)
Q Consensus       372 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  451 (883)
                      +..++.+.+..+... .....|..+..++.+......    ++...+.++.+|+.+.+..+ +..+-...|.++++|+.+
T Consensus       252 ~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i  325 (394)
T 4fs7_A          252 CTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI  325 (394)
T ss_dssp             CSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred             cccceeEEcCCCcce-eeccccccccccceeccCcee----eccccccccccccccccccc-cceechhhhcCCCCCCEE
Confidence            555555555544332 333445555566655554432    33444556666666666543 333334456666666666


Q ss_pred             EccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEE
Q 041908          452 YLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARIL  523 (883)
Q Consensus       452 ~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  523 (883)
                      ++.++ ++..-..+|.++++|+.+++..+ ++..-..+|.+|++|+.+++..+ ++ .+..+|.++++|+.+
T Consensus       326 ~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          326 DLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             EeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            66543 44444556667777777777655 44344556777777777777544 22 223456667766654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.44  E-value=1.7e-12  Score=143.92  Aligned_cols=334  Identities=12%  Similarity=0.085  Sum_probs=158.2

Q ss_pred             CCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcCCCCcEEEccCcccccCCC
Q 041908          191 LDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENF  270 (883)
Q Consensus       191 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~~  270 (883)
                      ++..-..+|.++++|+.+.+..+ ++ .|+..+|.++++|+.+++..+ ++ .++...+.++++|+.+.+..+-......
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l~~i~~~  134 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLMLKSIGVE  134 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTCCEECTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCceeeecce
Confidence            44445567889999999999754 66 787788999999999999754 44 5666778888888877665432211111


Q ss_pred             CCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCCCCc
Q 041908          271 PWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDL  350 (883)
Q Consensus       271 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L  350 (883)
                      .+..+ .+....... .........|..+++|+.+.+.++..  .++...+.++++|+.+.+..+ ++            
T Consensus       135 aF~~~-~~~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~------------  197 (394)
T 4fs7_A          135 AFKGC-DFKEITIPE-GVTVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LK------------  197 (394)
T ss_dssp             TTTTC-CCSEEECCT-TCCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CC------------
T ss_pred             eeecc-cccccccCc-cccccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ce------------
Confidence            22222 122221111 11112234455566666666654321  344444444555554444332 11            


Q ss_pred             cEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEcc
Q 041908          351 LHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVS  430 (883)
Q Consensus       351 ~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls  430 (883)
                                  .++...+..+..|+.+.+..+...  +........+|+.+.+.... . .+....+.++..++.+.+.
T Consensus       198 ------------~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~  261 (394)
T 4fs7_A          198 ------------IIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQ  261 (394)
T ss_dssp             ------------EECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEEC
T ss_pred             ------------EeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcC
Confidence                        112222222444444444433221  12222233444544443321 1 2333333444444444444


Q ss_pred             CcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCC
Q 041908          431 HNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDV  510 (883)
Q Consensus       431 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  510 (883)
                      .+..                        . .....|..+..++.+....+.+.   ..+|..+.+|+.+.+..+ ++...
T Consensus       262 ~~~~------------------------~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~  312 (394)
T 4fs7_A          262 NNKL------------------------R-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIG  312 (394)
T ss_dssp             CTTC------------------------E-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEEC
T ss_pred             CCcc------------------------e-eeccccccccccceeccCceeec---cccccccccccccccccc-cceec
Confidence            3321                        1 22223333444444444333221   123444444444444332 33233


Q ss_pred             CccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCC
Q 041908          511 SVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDS  590 (883)
Q Consensus       511 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~  590 (883)
                      ..+|.++.+|+.+++.++ ++.....+|.+|++|+.+.+..+ ++..-..+|.+|++|+.+++..+ ++ .+...|.+++
T Consensus       313 ~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~  388 (394)
T 4fs7_A          313 EEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTT  388 (394)
T ss_dssp             TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTC
T ss_pred             hhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCC
Confidence            334455555555555432 33333445555555666655544 43333445666666666666543 12 2234555666


Q ss_pred             CCcE
Q 041908          591 NLRA  594 (883)
Q Consensus       591 ~L~~  594 (883)
                      +|+.
T Consensus       389 ~L~~  392 (394)
T 4fs7_A          389 KFKW  392 (394)
T ss_dssp             EEEE
T ss_pred             CCcE
Confidence            6554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.43  E-value=2.5e-13  Score=132.15  Aligned_cols=130  Identities=16%  Similarity=0.101  Sum_probs=79.0

Q ss_pred             CCCCCCEEECCCCcCCCCCCccccCCC-cccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCE
Q 041908          492 NFSNLDVLLMSRNSLEGDVSVPLSNLQ-VARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMT  570 (883)
Q Consensus       492 ~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~  570 (883)
                      ++.+|++|++++|+++.. +. +..+. +|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        17 ~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            344444444444444422 22 22222 555555555555443  34555666666666666666443344567777777


Q ss_pred             EeccCCcCCccCCc--cccCCCCCcEEEccCCcccccCchh----hcCCCCCCEEEcCCCcCC
Q 041908          571 LDLRDNEFSGNIPP--LINEDSNLRALLLRGNNLQGNIPQQ----LCHLRKIAIVDISYNLLD  627 (883)
Q Consensus       571 L~Ls~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~g~~p~~----l~~l~~L~~L~ls~N~l~  627 (883)
                      |++++|+++ .+|.  .+..+++|+.|++++|+++ .+|..    +..+++|+.||++.|...
T Consensus        93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            777777775 3454  6777778888888888877 45553    777888888888877653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.43  E-value=3.3e-13  Score=130.70  Aligned_cols=108  Identities=20%  Similarity=0.207  Sum_probs=95.5

Q ss_pred             EEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCccccc
Q 041908          691 KFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQ  770 (883)
Q Consensus       691 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~  770 (883)
                      ..+..+.+..++....+.|+.|+|++|+|++.+|..|+++++|++|+|++|+|++..+..|+++++|++|||++|+|++.
T Consensus        17 l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l   96 (174)
T 2r9u_A           17 VNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI   96 (174)
T ss_dssp             EECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             EEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee
Confidence            34555666677777778999999999999998899999999999999999999987777789999999999999999987


Q ss_pred             CCccccCCCCCcEEEccCCcCcccCCCC
Q 041908          771 IPLELSELNYLAIFNVSYNDLSGPTPNT  798 (883)
Q Consensus       771 ip~~l~~l~~L~~l~ls~N~l~g~ip~~  798 (883)
                      .|..+..+++|+.|++++|++.+.++.-
T Consensus        97 ~~~~~~~l~~L~~L~L~~N~~~c~~~~~  124 (174)
T 2r9u_A           97 PRGAFDNLKSLTHIYLYNNPWDCECRDI  124 (174)
T ss_dssp             CTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred             CHHHhccccCCCEEEeCCCCcccccccH
Confidence            7777999999999999999999876643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=3e-13  Score=131.59  Aligned_cols=131  Identities=21%  Similarity=0.180  Sum_probs=82.7

Q ss_pred             cCCCCCCEEEccCCccCCCcchhhhCC-CCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcC
Q 041908          467 LNAPSLHILDVSNNMLSGQLPHWVGNF-SNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLW  545 (883)
Q Consensus       467 ~~l~~L~~L~ls~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~  545 (883)
                      ..+++|+.|++++|.++ .+|. +..+ ++|++|++++|.+++.  ..+..+++|++|++++|++++..+..+..+++|+
T Consensus        16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            34455566666666555 2333 3333 3666666666666653  4566666677777777766654444446667777


Q ss_pred             eeecccCccccccch--hhhcCCCCCEEeccCCcCCccCCcc----ccCCCCCcEEEccCCccc
Q 041908          546 HLFLHNNSLNGSIPS--ALFQSSQLMTLDLRDNEFSGNIPPL----INEDSNLRALLLRGNNLQ  603 (883)
Q Consensus       546 ~L~L~~n~l~~~~p~--~~~~~~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~L~~N~l~  603 (883)
                      +|++++|+++ .+|.  .+..+++|+.|++++|.++ .+|..    +..+++|++|++++|...
T Consensus        92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            7777777774 4554  6677777777777777776 34553    677777888888777665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.33  E-value=8e-12  Score=120.48  Aligned_cols=88  Identities=30%  Similarity=0.332  Sum_probs=56.3

Q ss_pred             CCCCEEECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcccc
Q 041908          138 RNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSG  217 (883)
Q Consensus       138 ~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  217 (883)
                      ++|++|+|++|.+.+..|                 ..+..+++|++|+|++|++++..+..|.++++|++|+|++|+++ 
T Consensus        30 ~~l~~L~L~~N~i~~~~~-----------------~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~-   91 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEP-----------------GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-   91 (170)
T ss_dssp             TTCSEEECCSSCCCCCCT-----------------TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             CCCcEEEcCCCcCCccCh-----------------hhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccC-
Confidence            555666666665555444                 45566666666666666666555555666777777777777776 


Q ss_pred             ccChhhhcCCCCCCEEeccCCcCccc
Q 041908          218 NLPISVFANLTSLEYLSLSGNNFQGS  243 (883)
Q Consensus       218 ~ip~~~~~~l~~L~~L~L~~n~l~g~  243 (883)
                      .+|...|.++++|++|++++|.++..
T Consensus        92 ~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           92 SIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             EeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            45535567777777777777776644

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.30  E-value=1.5e-11  Score=119.05  Aligned_cols=68  Identities=34%  Similarity=0.430  Sum_probs=40.1

Q ss_pred             hhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCc
Q 041908          173 ARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ  241 (883)
Q Consensus       173 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~  241 (883)
                      ..+..+++|++|+|++|++++..+..|.++++|++|+|++|+++ .+|...|..+++|++|++++|.+.
T Consensus        51 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           51 GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             HHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc-eeCHHHhccccCCCEEEeCCCCcc
Confidence            44555555666666666655444444556666666666666666 455344666666666666666665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.25  E-value=1.3e-11  Score=134.49  Aligned_cols=90  Identities=22%  Similarity=0.206  Sum_probs=82.7

Q ss_pred             cccccEEEccC-CcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEE
Q 041908          706 LEYMTGLDLSS-NELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIF  784 (883)
Q Consensus       706 l~~L~~LdLs~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l  784 (883)
                      +++|+.|||++ |+|++..|..|++|++|+.|+|++|+|++.+|..|++|++|+.|||++|+|++..|..+..++ |+.|
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            46789999996 999988889999999999999999999999999999999999999999999987777777776 9999


Q ss_pred             EccCCcCcccCC
Q 041908          785 NVSYNDLSGPTP  796 (883)
Q Consensus       785 ~ls~N~l~g~ip  796 (883)
                      ++++|++.+.+.
T Consensus       109 ~l~~N~~~c~c~  120 (347)
T 2ifg_A          109 VLSGNPLHCSCA  120 (347)
T ss_dssp             ECCSSCCCCCGG
T ss_pred             EeeCCCccCCCc
Confidence            999999998765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.20  E-value=1.9e-12  Score=141.40  Aligned_cols=135  Identities=20%  Similarity=0.145  Sum_probs=61.0

Q ss_pred             CCCCCeEEccCcccCccccccc----c-CCCCCCEEEccCCccCCCcchhh-hCCCCCCEEECCCCcCCCCCCccc----
Q 041908          445 MTQLAWLYLNDNQFTGRLEEGL----L-NAPSLHILDVSNNMLSGQLPHWV-GNFSNLDVLLMSRNSLEGDVSVPL----  514 (883)
Q Consensus       445 l~~L~~L~L~~n~l~~~~~~~~----~-~l~~L~~L~ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~l----  514 (883)
                      ++.|+.|++++|.++......+    . ..++|++|++++|.++......+ ..+++|++|+|++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            3456677777777664332222    2 12466666666666653222222 223455566666665543222222    


Q ss_pred             -cCCCcccEEecCCCcCcCc----cccccccCCCcCeeecccCccccc----cchhhhcCCCCCEEeccCCcCC
Q 041908          515 -SNLQVARILDISENKLYGP----LEFSFNHSSSLWHLFLHNNSLNGS----IPSALFQSSQLMTLDLRDNEFS  579 (883)
Q Consensus       515 -~~l~~L~~L~Ls~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~p~~~~~~~~L~~L~Ls~N~l~  579 (883)
                       ...++|+.|+|++|.++..    ++..+...++|++|+|++|.+++.    ++..+..+++|++|+|++|.++
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence             1234455555555554331    112223344444444444444322    1233333444444444444444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.19  E-value=8.5e-10  Score=122.10  Aligned_cols=109  Identities=12%  Similarity=0.177  Sum_probs=71.9

Q ss_pred             hhhcCCC-CCCEEEccCCcCCCCCCccccCCCCCCEEEccCCc---cccccChhhhcCCCCCCEEeccCCcCccccChHh
Q 041908          173 ARICELK-NLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQ---LSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSV  248 (883)
Q Consensus       173 ~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~---l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~  248 (883)
                      .+|.+++ .|+.+.+..+ ++..-..+|.++++|+.+.+..|.   ++ .|+..+|.++.+|+.+.+..+ ++ .++...
T Consensus        57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~a  132 (394)
T 4gt6_A           57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VT-EIDSEA  132 (394)
T ss_dssp             TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CS-EECTTT
T ss_pred             hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cc-eehhhh
Confidence            4566664 5888888754 665667788888889888887763   55 677678888888888777554 33 455567


Q ss_pred             hhcCCCCcEEEccCcccccCCCCCCCCccceEEEccc
Q 041908          249 LANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRR  285 (883)
Q Consensus       249 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~  285 (883)
                      +..+.+|+.+.+...........+..+..|+.+.+..
T Consensus       133 F~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~  169 (394)
T 4gt6_A          133 FHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPD  169 (394)
T ss_dssp             TTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred             hhhhcccccccccceeeeecccceecccccccccccc
Confidence            7778888887776543333333344444555555543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.18  E-value=1.3e-09  Score=120.71  Aligned_cols=44  Identities=16%  Similarity=0.227  Sum_probs=30.2

Q ss_pred             ccChhhhcCCC-CCCEEeccCCcCccccChHhhhcCCCCcEEEccCc
Q 041908          218 NLPISVFANLT-SLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRL  263 (883)
Q Consensus       218 ~ip~~~~~~l~-~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~  263 (883)
                      .|+..+|.++. .|+.+.+-.+ ++ .|....|.++++|+.+.+..+
T Consensus        53 ~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n   97 (394)
T 4gt6_A           53 KIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDN   97 (394)
T ss_dssp             EECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGG
T ss_pred             EcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCC
Confidence            56667787774 5888887543 44 566677777787777776554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.17  E-value=1.5e-12  Score=142.20  Aligned_cols=187  Identities=15%  Similarity=0.079  Sum_probs=79.2

Q ss_pred             CCCcEEeCCCCcCCCCCCccccc-----cCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccc-----
Q 041908          373 PELVYLDMSQNSFEGSIPPSMGY-----TVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKY-----  442 (883)
Q Consensus       373 ~~L~~L~L~~n~l~~~~p~~l~~-----l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----  442 (883)
                      +.|+.|++++|.++......+..     .++|++|+|++|.++......+...+++|+.|++++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            45566666666555322222221     14566666666655433233333333444555555554433222211     


Q ss_pred             cCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCC----CCccccCCC
Q 041908          443 MSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGD----VSVPLSNLQ  518 (883)
Q Consensus       443 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~  518 (883)
                      ...++|++|+|++|.++.....                    .++..+..+++|++|+|++|.++..    ++..+...+
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~--------------------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~  211 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVA--------------------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR  211 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHH--------------------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS
T ss_pred             hcCCccceeeCCCCCCChHHHH--------------------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC
Confidence            1123344444444444321100                    1222233344444444444444321    122333444


Q ss_pred             cccEEecCCCcCcCc----cccccccCCCcCeeecccCccccccchhhhcCC-----CCCEEe--ccCCcCC
Q 041908          519 VARILDISENKLYGP----LEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSS-----QLMTLD--LRDNEFS  579 (883)
Q Consensus       519 ~L~~L~Ls~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~-----~L~~L~--Ls~N~l~  579 (883)
                      +|+.|+|++|.+++.    +...+...++|++|+|++|.++......+....     .|+.+.  +..|.++
T Consensus       212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            555555555555432    222233445666666666666544444443331     155665  5555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.16  E-value=5.3e-11  Score=129.49  Aligned_cols=106  Identities=22%  Similarity=0.254  Sum_probs=91.2

Q ss_pred             cEEEccCC-cCcccCcccccccccCCeeeCCC-CcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEcc
Q 041908          710 TGLDLSSN-ELTGEIPSAIGYLQELHALNLSH-NHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVS  787 (883)
Q Consensus       710 ~~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~-N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls  787 (883)
                      ..+|++++ +|+ .||. |+.+++|+.|+|++ |+|++..|..|++|++|+.|||++|+|++.+|..|.+|++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35799998 899 6888 99999999999996 99999988999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCCccCCCCCCcccCCCcCCCC
Q 041908          788 YNDLSGPTPNTKQFANFDESNYRGNLNLCG  817 (883)
Q Consensus       788 ~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~  817 (883)
                      +|+|++..|.......+....+.+|+.-|.
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLSGNPLHCS  118 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred             CCccceeCHHHcccCCceEEEeeCCCccCC
Confidence            999998655443333355556678887775

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.94  E-value=8.6e-10  Score=119.23  Aligned_cols=167  Identities=14%  Similarity=0.188  Sum_probs=112.2

Q ss_pred             ccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhc--CCCCCCEEEcCCC--cCCCCCCc
Q 041908          557 SIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLC--HLRKIAIVDISYN--LLDGSIPS  632 (883)
Q Consensus       557 ~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~--~l~~L~~L~ls~N--~l~~~~p~  632 (883)
                      .+...+..+++|+.|+|++|.-. .++. +. +++|+.|++..|.+.......++  .+++|+.|+|+.+  ...+... 
T Consensus       163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~-  238 (362)
T 2ra8_A          163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD-  238 (362)
T ss_dssp             BCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSC-
T ss_pred             CHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchh-
Confidence            45567778899999999887311 2333 33 78999999999888755445554  7899999998642  2211100 


Q ss_pred             ccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEE
Q 041908          633 CFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGL  712 (883)
Q Consensus       633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  712 (883)
                       +..+.                                                            ..+.+..+++|+.|
T Consensus       239 -~~~l~------------------------------------------------------------~~l~~~~~p~Lr~L  257 (362)
T 2ra8_A          239 -MNVFR------------------------------------------------------------PLFSKDRFPNLKWL  257 (362)
T ss_dssp             -GGGTG------------------------------------------------------------GGSCTTTCTTCCEE
T ss_pred             -HHHHH------------------------------------------------------------HHHhcCCCCCcCEE
Confidence             00000                                                            00111236789999


Q ss_pred             EccCCcCcccCccccc---ccccCCeeeCCCCcCCcC----CCccccCcCCCCEEECCCCcccccCCccccC-CCCCcEE
Q 041908          713 DLSSNELTGEIPSAIG---YLQELHALNLSHNHLSGS----IPRSFSNLKMIESMDLSYNKLRGQIPLELSE-LNYLAIF  784 (883)
Q Consensus       713 dLs~N~l~g~ip~~l~---~l~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~-l~~L~~l  784 (883)
                      +|++|.+.+..+..+.   .+++|++|+||+|.+++.    ++..+.++++|+.|||++|.++...-..+.. +  ...+
T Consensus       258 ~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~  335 (362)
T 2ra8_A          258 GIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKI  335 (362)
T ss_dssp             EEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEE
T ss_pred             eCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEE
Confidence            9999999866554443   588999999999999874    4555677899999999999987543333432 2  3567


Q ss_pred             EccCCc
Q 041908          785 NVSYND  790 (883)
Q Consensus       785 ~ls~N~  790 (883)
                      ++++|+
T Consensus       336 ~~~~~~  341 (362)
T 2ra8_A          336 DVSDSQ  341 (362)
T ss_dssp             ECCSBC
T ss_pred             EecCCc
Confidence            888776

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.91  E-value=6e-08  Score=106.60  Aligned_cols=98  Identities=14%  Similarity=0.095  Sum_probs=45.9

Q ss_pred             cccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCc
Q 041908          465 GLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSL  544 (883)
Q Consensus       465 ~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L  544 (883)
                      +|.++.+|+.+.+..+ +......+|.+|++|+.+.+.++.++......|.+|.+|+.+++..+ ++.....+|.+|++|
T Consensus       258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  335 (379)
T 4h09_A          258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL  335 (379)
T ss_dssp             TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence            3444444444444332 22122234455555555555555444444445555555555555433 333334456666666


Q ss_pred             CeeecccCccccccchhhhcC
Q 041908          545 WHLFLHNNSLNGSIPSALFQS  565 (883)
Q Consensus       545 ~~L~L~~n~l~~~~p~~~~~~  565 (883)
                      +.+.+..+ ++..-..+|.++
T Consensus       336 ~~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          336 STISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             CCCCCCTT-CCEECTTTTTTS
T ss_pred             CEEEECCc-cCEEchhHhhCC
Confidence            66666443 332233445444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.87  E-value=1.1e-07  Score=104.57  Aligned_cols=128  Identities=12%  Similarity=0.118  Sum_probs=53.8

Q ss_pred             ccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcC
Q 041908          466 LLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLW  545 (883)
Q Consensus       466 ~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~  545 (883)
                      +..+..|+.+.+..+ +......++.++..|+.+.+..+ ++......|.++.+|+.+.+..+ +......+|.++++|+
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence            334444555544333 11122333444555555554433 32223334444445555544332 2222233444444555


Q ss_pred             eeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEc
Q 041908          546 HLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLL  597 (883)
Q Consensus       546 ~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  597 (883)
                      .+.+.++.++..-..+|.+|.+|+.++|..+ ++..-..+|.+|++|+.+.+
T Consensus       290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            5555444444333334444455555554332 33222334444444444444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.74  E-value=5.9e-09  Score=112.68  Aligned_cols=84  Identities=15%  Similarity=0.199  Sum_probs=56.3

Q ss_pred             cCCCcCeeecccCccccccchhhh---cCCCCCEEeccCCcCCcc----CCccccCCCCCcEEEccCCcccccCchhhcC
Q 041908          540 HSSSLWHLFLHNNSLNGSIPSALF---QSSQLMTLDLRDNEFSGN----IPPLINEDSNLRALLLRGNNLQGNIPQQLCH  612 (883)
Q Consensus       540 ~~~~L~~L~L~~n~l~~~~p~~~~---~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~  612 (883)
                      .+++|+.|+|++|.+.+..+..+.   .+++|++|+|+.|.+++.    ++..+..+++|+.|++++|.++...-..+..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            467888888888887755444444   356788888888888764    3344456788888888888877544444443


Q ss_pred             -CCCCCEEEcCCCc
Q 041908          613 -LRKIAIVDISYNL  625 (883)
Q Consensus       613 -l~~L~~L~ls~N~  625 (883)
                       +  ...++++.+.
T Consensus       330 al--g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL--PMKIDVSDSQ  341 (362)
T ss_dssp             HC--CSEEECCSBC
T ss_pred             Hc--CCEEEecCCc
Confidence             2  3557777765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.43  E-value=1.5e-07  Score=96.30  Aligned_cols=66  Identities=26%  Similarity=0.317  Sum_probs=34.0

Q ss_pred             ccccCCeeeCCCCcCCc--CCCccccCcCCCCEEECCCCcccccCCccccCCC--CCcEEEccCCcCcccCC
Q 041908          729 YLQELHALNLSHNHLSG--SIPRSFSNLKMIESMDLSYNKLRGQIPLELSELN--YLAIFNVSYNDLSGPTP  796 (883)
Q Consensus       729 ~l~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~--~L~~l~ls~N~l~g~ip  796 (883)
                      +++.|++|+||+|+|++  .+|..++.+++|+.|||++|+|++.  .++..+.  .|+.|++++|++++.+|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            44555555555555555  3344455555555555555555543  2222232  55555555555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.40  E-value=9e-08  Score=97.88  Aligned_cols=80  Identities=25%  Similarity=0.273  Sum_probs=67.7

Q ss_pred             ccccccEEEccCCcCcc--cCcccccccccCCeeeCCCCcCCcCCCccccCcC--CCCEEECCCCcccccCCc-------
Q 041908          705 VLEYMTGLDLSSNELTG--EIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLK--MIESMDLSYNKLRGQIPL-------  773 (883)
Q Consensus       705 ~l~~L~~LdLs~N~l~g--~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~--~L~~LdLs~N~Lsg~ip~-------  773 (883)
                      .++.|+.||||+|+|++  .+|..++.+++|+.|+|++|+|++.  ..+..++  +|+.|+|++|.+++.+|.       
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            47899999999999998  5677888999999999999999976  4466666  999999999999998873       


Q ss_pred             cccCCCCCcEEEc
Q 041908          774 ELSELNYLAIFNV  786 (883)
Q Consensus       774 ~l~~l~~L~~l~l  786 (883)
                      .+..+++|+.||-
T Consensus       246 il~~~P~L~~LDg  258 (267)
T 3rw6_A          246 IRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHCTTCCEESS
T ss_pred             HHHHCcccCeECC
Confidence            3677888888763

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.34  E-value=2.4e-07  Score=90.18  Aligned_cols=120  Identities=15%  Similarity=0.224  Sum_probs=65.1

Q ss_pred             hhhhCCCCCCEEECCCC-cCCCC----CCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhh
Q 041908          488 HWVGNFSNLDVLLMSRN-SLEGD----VSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSAL  562 (883)
Q Consensus       488 ~~~~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~  562 (883)
                      ..+...+.|++|+|++| .+...    +...+...++|++|+|++|.+......                    .+...+
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~--------------------~l~~~L   89 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAF--------------------ALAEML   89 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHH--------------------HHHHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHH--------------------HHHHHH
Confidence            34555666677776666 55432    122233344445555554444321111                    123344


Q ss_pred             hcCCCCCEEeccCCcCCcc----CCccccCCCCCcEEEc--cCCccccc----CchhhcCCCCCCEEEcCCCcCC
Q 041908          563 FQSSQLMTLDLRDNEFSGN----IPPLINEDSNLRALLL--RGNNLQGN----IPQQLCHLRKIAIVDISYNLLD  627 (883)
Q Consensus       563 ~~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L--~~N~l~g~----~p~~l~~l~~L~~L~ls~N~l~  627 (883)
                      ...++|++|+|++|.|++.    +...+...++|++|+|  ++|.+...    +...+...++|+.|++++|.+.
T Consensus        90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            4456666666666666643    3344555666777777  66776643    3344555677888888777663

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.31  E-value=2.2e-07  Score=90.38  Aligned_cols=114  Identities=14%  Similarity=0.158  Sum_probs=54.4

Q ss_pred             cccCCCCCCEEEccCC-ccCCC----cchhhhCCCCCCEEECCCCcCCCC----CCccccCCCcccEEecCCCcCcCc--
Q 041908          465 GLLNAPSLHILDVSNN-MLSGQ----LPHWVGNFSNLDVLLMSRNSLEGD----VSVPLSNLQVARILDISENKLYGP--  533 (883)
Q Consensus       465 ~~~~l~~L~~L~ls~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~--  533 (883)
                      .+...+.|++|++++| .+...    +...+...++|++|+|++|.+...    +...+...+.|++|+|++|.+.+.  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3444556666666665 55421    233444556666666666666532    122233345555666666555432  


Q ss_pred             --cccccccCCCcCeeec--ccCccccc----cchhhhcCCCCCEEeccCCcC
Q 041908          534 --LEFSFNHSSSLWHLFL--HNNSLNGS----IPSALFQSSQLMTLDLRDNEF  578 (883)
Q Consensus       534 --~~~~~~~~~~L~~L~L--~~n~l~~~----~p~~~~~~~~L~~L~Ls~N~l  578 (883)
                        +...+...++|++|+|  ++|.++..    +...+...++|++|+|++|.+
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence              1223333444555555  44554432    222333344455555555544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.63  E-value=2.3e-05  Score=74.12  Aligned_cols=33  Identities=6%  Similarity=-0.068  Sum_probs=14.1

Q ss_pred             ccEEecCCCcCcCccccccccCCCcCeeecccC
Q 041908          520 ARILDISENKLYGPLEFSFNHSSSLWHLFLHNN  552 (883)
Q Consensus       520 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n  552 (883)
                      |+.||++++.++..--..+..+++|++|+|++|
T Consensus        63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            444444444443332233344444444444444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.53  E-value=2.9e-05  Score=73.37  Aligned_cols=84  Identities=6%  Similarity=-0.040  Sum_probs=69.4

Q ss_pred             CCcCeeecccCccccccchhhhcCCCCCEEeccCCc-CCccCCccccCC----CCCcEEEccCCc-ccccCchhhcCCCC
Q 041908          542 SSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNE-FSGNIPPLINED----SNLRALLLRGNN-LQGNIPQQLCHLRK  615 (883)
Q Consensus       542 ~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~L~~N~-l~g~~p~~l~~l~~  615 (883)
                      ..|+.||+++|.++..--..+..+++|+.|+|++|. +++.--..++.+    ++|++|+|++|. ++..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            489999999999987766778899999999999995 776544455554    479999999985 87655566888999


Q ss_pred             CCEEEcCCCc
Q 041908          616 IAIVDISYNL  625 (883)
Q Consensus       616 L~~L~ls~N~  625 (883)
                      |+.|+++++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999985

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.01  E-value=0.00096  Score=60.01  Aligned_cols=40  Identities=20%  Similarity=0.078  Sum_probs=23.2

Q ss_pred             CCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccC
Q 041908          756 MIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPT  795 (883)
Q Consensus       756 ~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~i  795 (883)
                      +|+.|||++|+|+...+..|..+++|+.|+|++|++.+.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC   71 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC   71 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence            3555566666665544455556666666666666666533

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.96  E-value=0.00051  Score=66.15  Aligned_cols=86  Identities=14%  Similarity=0.148  Sum_probs=49.9

Q ss_pred             CCCcCeeecccCccccc----cchhhhcCCCCCEEeccCCcCCcc----CCccccCCCCCcEEEccCC---cccc----c
Q 041908          541 SSSLWHLFLHNNSLNGS----IPSALFQSSQLMTLDLRDNEFSGN----IPPLINEDSNLRALLLRGN---NLQG----N  605 (883)
Q Consensus       541 ~~~L~~L~L~~n~l~~~----~p~~~~~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N---~l~g----~  605 (883)
                      -+.|+.|+|++|.+...    +...+...+.|+.|+|++|.|++.    +-..+...+.|++|+|++|   .+..    .
T Consensus        69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~  148 (197)
T 1pgv_A           69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  148 (197)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence            34555555555555422    334455556777777777777643    2233445566777887754   3332    2


Q ss_pred             CchhhcCCCCCCEEEcCCCcC
Q 041908          606 IPQQLCHLRKIAIVDISYNLL  626 (883)
Q Consensus       606 ~p~~l~~l~~L~~L~ls~N~l  626 (883)
                      +.+.+..-+.|+.|+++.|..
T Consensus       149 ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          149 MMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCCcCeEeccCCCc
Confidence            345566677888888876643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.93  E-value=0.0011  Score=59.51  Aligned_cols=57  Identities=26%  Similarity=0.345  Sum_probs=48.8

Q ss_pred             cEEEccCCcCc-ccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCccc
Q 041908          710 TGLDLSSNELT-GEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLR  768 (883)
Q Consensus       710 ~~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Ls  768 (883)
                      +.+|.++++++ ..+|..+.  .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            46999999997 46776543  46899999999999888888999999999999999886

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.84  E-value=0.00067  Score=65.30  Aligned_cols=18  Identities=6%  Similarity=0.241  Sum_probs=8.1

Q ss_pred             hhCCCCCCEEECCCCcCC
Q 041908          490 VGNFSNLDVLLMSRNSLE  507 (883)
Q Consensus       490 ~~~l~~L~~L~L~~n~l~  507 (883)
                      +..-+.|+.|+|++|++.
T Consensus        66 L~~N~~L~~L~L~~n~ig   83 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAIS   83 (197)
T ss_dssp             HTTCSCCCEEECTTSCCB
T ss_pred             HhhCCCcCEEEccCCCCC
Confidence            333344444444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	883
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-14
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	4e-06
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	3e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.0 bits (196), Expect = 2e-16
 Identities = 66/364 (18%), Positives = 120/364 (32%), Gaps = 34/364 (9%)

Query: 177 ELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLS 236
           +L  +  L      +       +  L  L  ++ ++NQL+   P+    NLT L  + ++
Sbjct: 42  DLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITPLK---NLTKLVDILMN 96

Query: 237 GNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNL------------R 284
            N       L+ L N + L +       I+               N              
Sbjct: 97  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 285 RCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLP 344
           +    G   + L+   +L  ++    +        +L   T LE L   NN +  +    
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-L 215

Query: 345 DSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDL 404
               +L  L ++ N             L  L  LD++ N      P  +    +L  L L
Sbjct: 216 GILTNLDELSLNGNQLKD--IGTLAS-LTNLTDLDLANNQISNLAP--LSGLTKLTELKL 270

Query: 405 SSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEE 464
            +N  S   P   LT        N+  N    +      ++  L +L L  N  +     
Sbjct: 271 GANQISNISPLAGLTAL-----TNLELNENQLEDISPISNLKNLTYLTLYFNNISD--IS 323

Query: 465 GLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILD 524
            + +   L  L  +NN +S      + N +N++ L    N +      PL+NL     L 
Sbjct: 324 PVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 379

Query: 525 ISEN 528
           +++ 
Sbjct: 380 LNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.3 bits (189), Expect = 1e-15
 Identities = 65/423 (15%), Positives = 123/423 (29%), Gaps = 60/423 (14%)

Query: 178 LKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSG 237
           L   ++  L    +  ++ Q  ++L  +  L      +     I     L +L  ++ S 
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSN 75

Query: 238 NNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQ 297
           N       ++ L N ++L  + ++  QI              +               L 
Sbjct: 76  NQLTD---ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 298 YQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISN 357
               L     + ++++       LQ  +    +                  +L  L   +
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPL-----------ANLTTLERLD 181

Query: 358 NNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQF 417
            +   +   +    L  L  L  + N      P  +G    L  L L+ N          
Sbjct: 182 ISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD------ 233

Query: 418 LTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDV 477
                                     S+T L  L L +NQ +      L     L  L +
Sbjct: 234 ---------------------IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKL 270

Query: 478 SNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFS 537
             N +S   P          +  +  N  + +   P+SNL+    L +  N +      S
Sbjct: 271 GANQISNISPLA----GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS 326

Query: 538 FNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLL 597
               + L  LF  NN ++    S+L   + +  L    N+ S   P  +   + +  L L
Sbjct: 327 --SLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 380

Query: 598 RGN 600
              
Sbjct: 381 NDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.8 bits (185), Expect = 5e-15
 Identities = 75/387 (19%), Positives = 134/387 (34%), Gaps = 39/387 (10%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDL 145
           +L +     +G  + ++      T L  +T+L  +   +    K +  +  L NL  ++ 
Sbjct: 20  ALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGI----KSIDGVEYLNNLTQINF 73

Query: 146 SGNGLIGSLTMQG-EKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTY 204
           S N L     ++   KL  +     ++              L+      +    L NLT 
Sbjct: 74  SNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 205 LRVLDLTSNQL---------------SGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVL 249
           L  L+L+SN +               S    ++    L +L  L     +      +SVL
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 250 ANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSH 309
           A  + LE L  +  QI ++  P      L  L+L    +       L    +L  +DL++
Sbjct: 194 AKLTNLESLIATNNQI-SDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 250

Query: 310 NNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFG 369
           N ++   P   L   TKL  L L  N +  +  L          +  N            
Sbjct: 251 NQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS----PI 303

Query: 370 MILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNV 429
             L  L YL +  N+     P  +    +L  L  ++N  S       L    ++ +++ 
Sbjct: 304 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV---SSLANLTNINWLSA 358

Query: 430 SHNYFGGQIFPKYMSMTQLAWLYLNDN 456
            HN           ++T++  L LND 
Sbjct: 359 GHNQISD--LTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.4 bits (184), Expect = 5e-15
 Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 18/211 (8%)

Query: 58  WVDNRTSDCCSWERIKCNVTTANYNNNGS-------LKQLKILNIGFNSFSESLVPLLTS 110
              N+ SD     ++    +    NN  S       L  L  L++  N   +  +  L S
Sbjct: 182 ISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLAS 239

Query: 111 LTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCRE 170
           LT+LT L L  N +     P+  L  L  L++     + +     +       LN    E
Sbjct: 240 LTNLTDLDLANNQIS-NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE 298

Query: 171 MNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSL 230
             + I  LKNL  L L +N +    P  +S+LT L+ L   +N++S    +S  ANLT++
Sbjct: 299 DISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD---VSSLANLTNI 353

Query: 231 EYLSLSGNNFQGSFSLSVLANHSRLEVLQIS 261
            +LS   N       L+ LAN +R+  L ++
Sbjct: 354 NWLSAGHNQISD---LTPLANLTRITQLGLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.1 bits (165), Expect = 1e-12
 Identities = 72/442 (16%), Positives = 133/442 (30%), Gaps = 80/442 (18%)

Query: 348 RDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSN 407
            + +  V+   N    +       L ++  L   +   + SI   + Y   L  ++ S+N
Sbjct: 22  AEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNN 76

Query: 408 NFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLL 467
             +   P + LT  V +   N              ++   L    + D            
Sbjct: 77  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK------- 129

Query: 468 NAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISE 527
                ++ +++   LS      +   S L  L       +     PL+NL     LDIS 
Sbjct: 130 -----NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 184

Query: 528 NKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLIN 587
           NK+           ++L  L   NN ++   P  +  +  L  L L  N+        + 
Sbjct: 185 NKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLKD--IGTLA 238

Query: 588 EDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPF 647
             +NL  L L  N +    P  L  L K+  + +  N +    P         +E     
Sbjct: 239 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLE----- 291

Query: 648 NGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLE 707
                                                              +      L+
Sbjct: 292 --------------------------------------------LNENQLEDISPISNLK 307

Query: 708 YMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKL 767
            +T L L  N ++   P  +  L +L  L  ++N +S     S +NL  I  +   +N++
Sbjct: 308 NLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQI 363

Query: 768 RGQIPLELSELNYLAIFNVSYN 789
               P  L+ L  +    ++  
Sbjct: 364 SDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.7 bits (151), Expect = 7e-11
 Identities = 71/389 (18%), Positives = 118/389 (30%), Gaps = 75/389 (19%)

Query: 47  DMQFADAILVSWVDNRTSDCCSWERIKCNVTTANYNNNG--------SLKQLKILNIGFN 98
           D   A+ +         +D  S   +   VTT   +  G         L  L  +N   N
Sbjct: 18  DTALAEKMKTVLGKTNVTDTVSQTDLD-QVTTLQADRLGIKSIDGVEYLNNLTQINFSNN 76

Query: 99  SFSESLVPLLTSLTSLTSLFLE-------------------------------------- 120
             ++  +  L +LT L  + +                                       
Sbjct: 77  QLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 121 ------GNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNAR 174
                  N +        +    +      ++    + +LT         N         
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-- 192

Query: 175 ICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLS 234
           + +L NL  L  + N++    P     LT L  L L  NQL     I   A+LT+L  L 
Sbjct: 193 LAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD---IGTLASLTNLTDLD 247

Query: 235 LSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPS 294
           L+ N       LS     ++L  L++   QI   N   L             N    I  
Sbjct: 248 LANNQISNLAPLS---GLTKLTELKLGANQI--SNISPLAGLTALTNLELNENQLEDISP 302

Query: 295 FLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLV 354
                 +L Y+ L  NN++   P   + + TKL+ LF  NN +  +  L +    +  L 
Sbjct: 303 I-SNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVSDVSSLANLTN-INWLS 357

Query: 355 ISNNNFIGMLPDNFGMILPELVYLDMSQN 383
             +N    + P      L  +  L ++  
Sbjct: 358 AGHNQISDLTPLAN---LTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 64/411 (15%), Positives = 124/411 (30%), Gaps = 79/411 (19%)

Query: 399 LLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQF 458
            +   L   N +  + +  L    +L    +      G        +  L  +  ++NQ 
Sbjct: 24  KMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQL 78

Query: 459 TGRLEEGLLNAPSLHILDVSNNMLS------------GQLPHWVGNFSNLDVLLMSRNSL 506
           T      L N   L  + ++NN ++            G             +  ++  + 
Sbjct: 79  TD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 507 EGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS- 565
               S  +S++     L   +   +G         ++L  L   + S N     ++    
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 196

Query: 566 SQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNL 625
           + L +L   +N+ S   P  I   +NL  L L GN L+      L  L  +  +D++ N 
Sbjct: 197 TNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQ 252

Query: 626 LDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELR 685
           +    P                +G      L +                I +      L 
Sbjct: 253 ISNLAP---------------LSGLTKLTELKLGANQ------------ISNISPLAGLT 285

Query: 686 QRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSG 745
               ++       +      L+ +T L L  N ++   P  +  L +L  L  ++N +S 
Sbjct: 286 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD 343

Query: 746 SIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTP 796
               S +NL  I  +   +N++                        S  TP
Sbjct: 344 --VSSLANLTNINWLSAGHNQI------------------------SDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 27/130 (20%), Positives = 40/130 (30%), Gaps = 13/130 (10%)

Query: 26  SCLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCSWERIKCNVTTANYNNN- 84
           S L       L                   +   +N+  D      +K       Y NN 
Sbjct: 260 SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 319

Query: 85  ------GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLR 138
                  SL +L+ L    N  S+  V  L +LT++  L    N +     P   L NL 
Sbjct: 320 SDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQI-SDLTP---LANLT 373

Query: 139 NLEVLDLSGN 148
            +  L L+  
Sbjct: 374 RITQLGLNDQ 383

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 74.4 bits (181), Expect = 6e-15
 Identities = 50/267 (18%), Positives = 88/267 (32%), Gaps = 6/267 (2%)

Query: 564 QSSQLMTLDLRDNEFSGN--IPPLINEDSNLRALLLRGN-NLQGNIPQQLCHLRKIAIVD 620
           Q+ ++  LDL          IP  +     L  L + G  NL G IP  +  L ++  + 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 621 ISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAY--YNSTLNLIFSG 678
           I++  + G+IP   + I   +     +N         +   P +       + ++     
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 679 EDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNL 738
                 +    +                         S  +     S +    +      
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 739 SHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNT 798
              +            K +  +DL  N++ G +P  L++L +L   NVS+N+L G  P  
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

Query: 799 KQFANFDESNYRGNLNLCGPAVLKNCS 825
                FD S Y  N  LCG   L  C+
Sbjct: 288 GNLQRFDVSAYANNKCLCGSP-LPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 69.8 bits (169), Expect = 2e-13
 Identities = 54/262 (20%), Positives = 85/262 (32%), Gaps = 26/262 (9%)

Query: 375 LVYLDMSQNSFEG--SIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHN 432
           +  LD+S  +      IP S+     L FL +   N         +     L ++ ++H 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 433 YFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGN 492
              G I      +  L  L  + N  +G L   + + P+L  +    N +SG +P   G+
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 493 FSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKL---------------------- 530
           FS L   +    +       P         +D+S N L                      
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 531 -YGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINED 589
                      S +L  L L NN + G++P  L Q   L +L++  N   G IP   N  
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL- 290

Query: 590 SNLRALLLRGNNLQGNIPQQLC 611
                     N      P   C
Sbjct: 291 QRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.5 bits (163), Expect = 1e-12
 Identities = 65/282 (23%), Positives = 99/282 (35%), Gaps = 27/282 (9%)

Query: 226 NLTSLEYLSLSGNNFQGSFSL-SVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLR 284
               +  L LSG N    + + S LAN   L  L I  +                     
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI--------------------- 86

Query: 285 RCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLP 344
             N+ G IP  +     L Y+ ++H N++G  P +L Q  T +   F +N     L    
Sbjct: 87  -NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145

Query: 345 DSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDL 404
            S  +L+ +    N   G +PD++G        + +S+N   G IPP+            
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS 205

Query: 405 SSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEE 464
            +                    +  +   F      K      L  L L +N+  G L +
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAF---DLGKVGLSKNLNGLDLRNNRIYGTLPQ 262

Query: 465 GLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSL 506
           GL     LH L+VS N L G++P   GN    DV   + N  
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.1 bits (162), Expect = 2e-12
 Identities = 69/342 (20%), Positives = 121/342 (35%), Gaps = 58/342 (16%)

Query: 27  CLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCC--SWERIKCNVTTANYNNN 84
           C   ++  LL+IK   K + +       L SW    T+DCC  +W  + C+        +
Sbjct: 3   CNPQDKQALLQIK---KDLGN----PTTLSSW--LPTTDCCNRTWLGVLCD-------TD 46

Query: 85  GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLD 144
               ++  L++   +  +   P+ +SL +L  L                +  + NL    
Sbjct: 47  TQTYRVNNLDLSGLNLPKPY-PIPSSLANLPYLN------------FLYIGGINNLVGPI 93

Query: 145 LSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTY 204
                 +  L           N    +   + ++K LV L+ S+N L G+LP  +S+L  
Sbjct: 94  PPAIAKLTQLHYLYITH---TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 205 LRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQ 264
           L  +    N++SG +P S  +       +++S N   G    +    +     L  + L+
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210

Query: 265 IETENFPWLPRF----------------------QLKVLNLRRCNISGTIPSFLQYQYDL 302
            +        +                        L  L+LR   I GT+P  L     L
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 303 RYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLP 344
             +++S NNL G  P     N  + +     NN       LP
Sbjct: 271 HSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 63.2 bits (152), Expect = 3e-11
 Identities = 64/258 (24%), Positives = 103/258 (39%), Gaps = 5/258 (1%)

Query: 379 DMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELP-KQFLTGCVSLAFMNVSHNY-FGG 436
           D    ++ G +  +   T R+  LDLS  N     P    L     L F+ +       G
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 437 QIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNL 496
            I P    +TQL +LY+     +G + + L    +L  LD S N LSG LP  + +  NL
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 497 DVLLMSRNSLEGDV-SVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLN 555
             +    N + G +     S  ++   + IS N+L G +  +F + +  +     N    
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211

Query: 556 GSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRK 615
            +     F S +                  +    NL  L LR N + G +PQ L  L+ 
Sbjct: 212 DASVL--FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 616 IAIVDISYNLLDGSIPSC 633
           +  +++S+N L G IP  
Sbjct: 270 LHSLNVSFNNLCGEIPQG 287

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (177), Expect = 1e-14
 Identities = 47/268 (17%), Positives = 87/268 (32%), Gaps = 6/268 (2%)

Query: 338 KGLLHLPDS-KRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYT 396
           +GL  +P         + +  N    +   +F      L  L +  N        +    
Sbjct: 21  QGLQAVPVGIPAASQRIFLHGNRISHVPAASFRA-CRNLTILWLHSNVLARIDAAAFTGL 79

Query: 397 VRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDN 456
             L  LDLS N     +      G   L  +++            +  +  L +LYL DN
Sbjct: 80  ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139

Query: 457 QFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSN 516
                 ++   +  +L  L +  N +S           +LD LL+ +N +         +
Sbjct: 140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199

Query: 517 LQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDN 576
           L     L +  N L      +     +L +L L++N       +     + L       +
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSSS 258

Query: 577 EFSGNIPPLINEDSNLRALLLRGNNLQG 604
           E   ++P  +   +      L  N+LQG
Sbjct: 259 EVPCSLPQRL---AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 2e-11
 Identities = 49/250 (19%), Positives = 84/250 (33%), Gaps = 5/250 (2%)

Query: 388 SIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQ 447
           ++P  +    + +   L  N  S  +P      C +L  + +  N         +  +  
Sbjct: 25  AVPVGIPAASQRI--FLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 448 LAWLYLNDNQFTGRLEEGLLNA-PSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSL 506
           L  L L+DN     ++    +    LH L +    L    P      + L  L +  N+L
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141

Query: 507 EGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSS 566
           +        +L     L +  N++    E +F    SL  L LH N +    P A     
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 567 QLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLL 626
           +LMTL L  N  S      +     L+ L L  N    +   +      +     S + +
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRGSSSEV 260

Query: 627 DGSIPSCFTN 636
             S+P     
Sbjct: 261 PCSLPQRLAG 270

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (149), Expect = 5e-11
 Identities = 44/255 (17%), Positives = 82/255 (32%), Gaps = 5/255 (1%)

Query: 278 LKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFL 337
            + + L    IS    +  +   +L  + L  N LA              +     N  L
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 338 KGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTV 397
           + +          LH +  +   +  L       L  L YL +  N+ +     +     
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 398 RLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQ 457
            L  L L  N  S  +P++   G  SL  + +  N         +  + +L  LYL  N 
Sbjct: 154 NLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 458 FTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNL 517
            +    E L    +L  L +++N            ++ L     S + +   +   L+  
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCD-CRARPLWAWLQKFRGSSSEVPCSLPQRLAGR 271

Query: 518 QVARILDISENKLYG 532
               +  ++ N L G
Sbjct: 272 D---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 1e-10
 Identities = 45/286 (15%), Positives = 85/286 (29%), Gaps = 35/286 (12%)

Query: 176 CELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSL 235
           C  +  V  +     L  ++P  +      + + L  N++S  +P + F    +L  L L
Sbjct: 8   CYNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISH-VPAASFRACRNLTILWL 63

Query: 236 SGNN------------------------FQGSFSLSVLANHSRLEVLQISRLQIETENFP 271
             N                            S   +      RL  L + R  ++     
Sbjct: 64  HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG 123

Query: 272 WLPR-FQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFL 330
                  L+ L L+   +        +   +L ++ L  N ++   P    +    L+ L
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRL 182

Query: 331 FLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIP 390
            L  N +  +          L  +    N +  LP      L  L YL ++ N +     
Sbjct: 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC- 241

Query: 391 PSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGG 436
            +      L     SS+     LP++            ++ N   G
Sbjct: 242 RARPLWAWLQKFRGSSSEVPCSLPQRL----AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 2e-08
 Identities = 35/198 (17%), Positives = 63/198 (31%), Gaps = 1/198 (0%)

Query: 446 TQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNS 505
                ++L+ N+ +           +L IL + +N+L+          + L+ L +S N+
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 506 LEGDV-SVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQ 564
               V       L     L +    L       F   ++L +L+L +N+L          
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 565 SSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYN 624
              L  L L  N  S           +L  LLL  N +    P     L ++  + +  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 625 LLDGSIPSCFTNIWPWME 642
            L          +     
Sbjct: 212 NLSALPTEALAPLRALQY 229

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 46/254 (18%), Positives = 69/254 (27%), Gaps = 13/254 (5%)

Query: 138 RNLEVLDLSGNGLIGSLTMQGEKLELL--------NNKCREMNARICELKNLVELNLSWN 189
              + + L GN +             L             +  A                
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 190 KLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVL 249
           +L    P     L  L  L L        L   +F  L +L+YL L  N  Q        
Sbjct: 92  QLRSVDPATFHGLGRLHTLHL-DRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-DTF 149

Query: 250 ANHSRLEVLQISRLQIETENFPWLPRFQ-LKVLNLRRCNISGTIPSFLQYQYDLRYIDLS 308
            +   L  L +   +I +           L  L L +  ++   P   +    L  + L 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 309 HNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNF 368
            NN     PT  L     L++L L +N              L     S++     LP   
Sbjct: 210 ANN-LSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRL 268

Query: 369 -GMILPELVYLDMS 381
            G  L  L   D+ 
Sbjct: 269 AGRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 47/279 (16%), Positives = 83/279 (29%), Gaps = 11/279 (3%)

Query: 540 HSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRG 599
           ++            L  ++P  +  +SQ   + L  N  S           NL  L L  
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGIPAASQ--RIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 600 NNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGD-PFNGFVFGYTLVV 658
           N L          L  +  +D+S N    S+     +    +        G       + 
Sbjct: 66  NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF 125

Query: 659 EHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGL---DLS 715
               A+   Y     L    +D       +   F+  NR  S        +  L    L 
Sbjct: 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185

Query: 716 SNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLEL 775
            N +    P A   L  L  L L  N+LS     + + L+ ++ + L+ N          
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-R 244

Query: 776 SELNYLAIFNVSYNDLSGPTPNT---KQFANFDESNYRG 811
               +L  F  S +++    P     +       ++ +G
Sbjct: 245 PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (175), Expect = 9e-14
 Identities = 59/453 (13%), Positives = 110/453 (24%), Gaps = 21/453 (4%)

Query: 180 NLVELNLSWNKL-DGSLPQCLSNLTYLRVLDLTSNQLSGNLPI---SVFANLTSLEYLSL 235
           ++  L++   +L D    + L  L   +V+ L    L+        S      +L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 236 SGNNFQG----SFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGT 291
             N             +     +++ L +    +       L      +  L+  ++S  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 292 IPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLL 351
           +      Q     +      L      +   +    E L            L  S  D+ 
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 352 HLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSG 411
              +                L        S N  +     +   ++R L L  +     G
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 412 ELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPS 471
                      S     +     G            L              E G   A  
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 472 LHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLY 531
           L    +        L     +F+       S    +    + L                 
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE--- 359

Query: 532 GPLEFSFNHSSSLWHLFLHNNSLNG----SIPSALFQSSQLMTLDLRDNEFSGNIPP--- 584
              +      S L  L+L +  ++     S+ + L  +  L  LDL +N           
Sbjct: 360 -LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418

Query: 585 --LINEDSNLRALLLRGNNLQGNIPQQLCHLRK 615
             +      L  L+L        +  +L  L K
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (143), Expect = 6e-10
 Identities = 63/467 (13%), Positives = 117/467 (25%), Gaps = 38/467 (8%)

Query: 139 NLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDG----S 194
           +++ LD+    L  +        ELL             L+    + L    L       
Sbjct: 3   DIQSLDIQCEELSDA-----RWAELLPL-----------LQQCQVVRLDDCGLTEARCKD 46

Query: 195 LPQCLSNLTYLRVLDLTSNQLSG----NLPISVFANLTSLEYLSLSGNNFQGSFSLSVLA 250
           +   L     L  L+L SN+L       +   +      ++ LSL      G+    + +
Sbjct: 47  ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 106

Query: 251 NHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHN 310
               L  LQ   L         L      +L+ +       +            +     
Sbjct: 107 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR 166

Query: 311 NLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGM 370
                    +  N+     + +    LK      ++ +     V S+N            
Sbjct: 167 AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC-GIVASK 225

Query: 371 ILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVS 430
                + L  ++    G      G       L        G   K     C  L      
Sbjct: 226 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 285

Query: 431 HNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWV 490
                            L    L        L     +  +      S+ +   +    +
Sbjct: 286 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 345

Query: 491 GNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKL----YGPLEFSFNHSSSLWH 546
              +N     +    +            V R+L +++  +       L  +   + SL  
Sbjct: 346 QISNN----RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 401

Query: 547 LFLHNNSLNGSIPSALFQS-----SQLMTLDLRDNEFSGNIPPLINE 588
           L L NN L  +    L +S       L  L L D  +S  +   +  
Sbjct: 402 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA 448

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 3e-07
 Identities = 56/449 (12%), Positives = 116/449 (25%), Gaps = 22/449 (4%)

Query: 90  LKILNIGFNSFS-ESLVPLLTSLTSLTSLFLEGNNLG-VGFKPM-KVLPNLRNLEVLDLS 146
           ++ L+I     S      LL  L     + L+   L     K +   L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 147 GN--------GLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQC 198
            N         ++  L     K++ L+ +   +    C + +     L   +        
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 199 LSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVL 258
           L +     + +   +       + +     S        +  +       L   +     
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 259 QISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPT 318
              R+  +           LK+ +    + +      +             +N  G    
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 319 WLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYL 378
             L          L   ++        +K       +             G  L +    
Sbjct: 244 AELCPGLLHPSSRLRTLWIWE--CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 301

Query: 379 DMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQI 438
            + +   E        +     F     ++FS  L +      + ++   +         
Sbjct: 302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 361

Query: 439 FPKYMSMTQLAWLYLNDNQFTGR----LEEGLLNAPSLHILDVSNNMLSGQLPHWVG--- 491
                  + L  L+L D   +      L   LL   SL  LD+SNN L       +    
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 492 --NFSNLDVLLMSRNSLEGDVSVPLSNLQ 518
                 L+ L++       ++   L  L+
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 2e-06
 Identities = 59/492 (11%), Positives = 127/492 (25%), Gaps = 59/492 (11%)

Query: 301 DLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNF 360
           D++ +D+    L+      LL    + + + L +        L +++   +   +  N  
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC------GLTEARCKDISSALRVN-- 54

Query: 361 IGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMG-----YTVRLLFLDLSSNNFSGELPK 415
                       P L  L++  N         +       + ++  L L +   +G    
Sbjct: 55  ------------PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 102

Query: 416 QFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHIL 475
              +   +L  +    +     +    + +     L         +LE   L+A S   L
Sbjct: 103 VLSSTLRTLPTLQE-LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 161

Query: 476 DVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLE 535
                         V N    +  +        D    L  L++      S+N       
Sbjct: 162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 221

Query: 536 FSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRAL 595
            +   S     L  +     G              L        G               
Sbjct: 222 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK----------- 270

Query: 596 LLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYT 655
                        +     K   +  +    +G+   C T + P  +    +        
Sbjct: 271 ----GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 326

Query: 656 LVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLS 715
               HF ++ A     L L  S     +   R   + + +             +  L L+
Sbjct: 327 ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS---------VLRVLWLA 377

Query: 716 SNELTGE----IPSAIGYLQELHALNLSHNHLSGSIPRSFS-----NLKMIESMDLSYNK 766
             +++      + + +     L  L+LS+N L  +              ++E + L    
Sbjct: 378 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 437

Query: 767 LRGQIPLELSEL 778
              ++   L  L
Sbjct: 438 WSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 2e-05
 Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 5/87 (5%)

Query: 712 LDLSSNELTGE-IPSAIGYLQELHALNLSHNHLSG----SIPRSFSNLKMIESMDLSYNK 766
           LD+   EL+       +  LQ+   + L    L+      I  +      +  ++L  N+
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 767 LRGQIPLELSELNYLAIFNVSYNDLSG 793
           L       + +        +    L  
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 1e-04
 Identities = 22/102 (21%), Positives = 31/102 (30%), Gaps = 11/102 (10%)

Query: 168 CREMNARICELKNLVELNLSWNKLDG----SLPQCLSNLTYLRVLDLTSNQLSGN----L 219
                        L  L L+   +      SL   L     LR LDL++N L       L
Sbjct: 358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417

Query: 220 PISVFANLTSLEYLSLSGNNFQGSFS---LSVLANHSRLEVL 258
             SV      LE L L    +         ++  +   L V+
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 48/445 (10%), Positives = 106/445 (23%), Gaps = 24/445 (5%)

Query: 374 ELVYLDMSQNSFEGSIPPSMGYTVRLL-FLDLSSNNFSGELPK---QFLTGCVSLAFMNV 429
           ++  LD+       +    +   ++    + L     +    K     L    +LA +N+
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 430 SHNYFGGQIFPKYMSM-----TQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSG 484
             N  G       +        ++  L L +   TG     L +           ++   
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 485 QLPHWVGN---FSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHS 541
            L            LD             S+  ++ +    +  ++         + + +
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 542 SSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNN 601
            +   +       +     AL   S  +T D   +            +  L +  L    
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 602 LQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHF 661
           +    P  L    ++  + I    +          +    E     +             
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 662 PAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTG 721
              +             +                 +        +      D    EL  
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 722 EIPSAIGYLQELHALNLSHNHLSG----SIPRSFSNLKMIESMDLSYNKLRGQIPLELSE 777
            +      L+ L    L+   +S     S+  +      +  +DLS N L     L+L E
Sbjct: 363 GLGQPGSVLRVL---WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 778 -----LNYLAIFNVSYNDLSGPTPN 797
                   L    +     S    +
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 0.001
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 13/104 (12%)

Query: 264 QIETENFPWLPRFQLKVLNLRRCNISGT----IPSFLQYQYDLRYIDLSHNNL----AGT 315
             E       P   L+VL L  C++S +    + + L   + LR +DLS+N L       
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416

Query: 316 FPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNN 359
               + Q    LE L L++ +        + +  L  L     +
Sbjct: 417 LVESVRQPGCLLEQLVLYDIYWSE-----EMEDRLQALEKDKPS 455

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.4 bits (163), Expect = 1e-12
 Identities = 41/301 (13%), Positives = 86/301 (28%), Gaps = 34/301 (11%)

Query: 470 PSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENK 529
           P   +LD+ NN ++        N  NL  L++  N +        + L     L +S+N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 530 LYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINED 589
           L    E        L         +  S+ + L Q   +  L     + SG         
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQGM 149

Query: 590 SNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNG 649
             L  + +   N+          L ++    +  N +     +    +    + G  FN 
Sbjct: 150 KKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 650 FVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYM 709
                   + + P +   + +   L                                +Y+
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKL----------------------VKVPGGLADHKYI 244

Query: 710 TGLDLSSNELTG------EIPSAIGYLQELHALNLSHNHLSGS--IPRSFSNLKMIESMD 761
             + L +N ++         P           ++L  N +      P +F  + +  ++ 
Sbjct: 245 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 304

Query: 762 L 762
           L
Sbjct: 305 L 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.2 bits (160), Expect = 3e-12
 Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 8/199 (4%)

Query: 446 TQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNS 505
              A L L +N+ T   +    N  +LH L + NN +S   P        L+ L +S+N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 506 LEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLN--GSIPSALF 563
           L+    +P    +  + L + EN++    +  FN  + +  + L  N L   G    A  
Sbjct: 91  LK---ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 564 QSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISY 623
              +L  + + D   +  IP  +    +L  L L GN +       L  L  +A + +S+
Sbjct: 148 GMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 624 NLLDGSIPSCFTNIWPWME 642
           N +         N     E
Sbjct: 205 NSISAVDNGSLANTPHLRE 223

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.8 bits (159), Expect = 4e-12
 Identities = 41/262 (15%), Positives = 86/262 (32%), Gaps = 14/262 (5%)

Query: 253 SRLEVLQISRLQIETENFPWLPRF-QLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNN 311
               +L +   +I             L  L L    IS   P        L  + LS N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 312 LAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMI 371
           L    P  + +   +L         ++  +    ++  ++ L  +     G+    F   
Sbjct: 91  L-KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG- 148

Query: 372 LPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSH 431
           + +L Y+ ++  +   +IP  +     L  L L  N  +         G  +LA + +S 
Sbjct: 149 MKKLSYIRIADTNIT-TIPQGLPP--SLTELHLDGNKITKVDAASL-KGLNNLAKLGLSF 204

Query: 432 NYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSG------Q 485
           N           +   L  L+LN+N+          +   + ++ + NN +S        
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL-ADHKYIQVVYLHNNNISAIGSNDFC 263

Query: 486 LPHWVGNFSNLDVLLMSRNSLE 507
            P +    ++   + +  N ++
Sbjct: 264 PPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.8 bits (159), Expect = 4e-12
 Identities = 46/262 (17%), Positives = 86/262 (32%), Gaps = 12/262 (4%)

Query: 371 ILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVS 430
           + P+   LD+  N               L  L L +N  S   P  F    V L  + +S
Sbjct: 29  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLYLS 87

Query: 431 HNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWV 490
            N     +  K     Q   ++ N+     +     LN   +  L  +    SG      
Sbjct: 88  KNQLKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 491 GNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLH 550
                L  + ++  ++    ++P         L +  NK+      S    ++L  L L 
Sbjct: 147 QGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 551 NNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQG------ 604
            NS++     +L  +  L  L L +N+    +P  + +   ++ + L  NN+        
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 262

Query: 605 NIPQQLCHLRKIAIVDISYNLL 626
             P         + V +  N +
Sbjct: 263 CPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.6 bits (148), Expect = 9e-11
 Identities = 53/299 (17%), Positives = 86/299 (28%), Gaps = 48/299 (16%)

Query: 138 RNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQ 197
            +  +LDL  N +                     +     LKNL  L L  NK+    P 
Sbjct: 31  PDTALLDLQNNKITEIK-----------------DGDFKNLKNLHTLILINNKISKISPG 73

Query: 198 CLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEV 257
             + L  L  L L+ NQL                                +      L V
Sbjct: 74  AFAPLVKLERLYLSKNQLK--------------------------ELPEKMPKTLQELRV 107

Query: 258 LQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFP 317
            +    ++    F  L +  +  L       SG      Q    L YI ++  N+  T P
Sbjct: 108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIP 166

Query: 318 TWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVY 377
             L  +   L  L L  N +  +        + L  +  + N I  + +      P L  
Sbjct: 167 QGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 223

Query: 378 LDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGG 436
           L ++ N     +P  +     +  + L +NN S      F     +    + S      
Sbjct: 224 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.3 bits (142), Expect = 6e-10
 Identities = 41/265 (15%), Positives = 82/265 (30%), Gaps = 32/265 (12%)

Query: 557 SIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKI 616
            +P  L        LDL++N+ +           NL  L+L  N +    P     L K+
Sbjct: 24  KVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 617 AIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIF 676
             + +S N L   +P         +   +     V        +   +     + L    
Sbjct: 82  ERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140

Query: 677 SGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHAL 736
                 +  +++    +A     +   G+   +T L L  N++T    +++  L  L  L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL 200

Query: 737 NLSHNHLSGSI-----------------------PRSFSNLKMIESMDLSYNKLRG---- 769
            LS N +S                          P   ++ K I+ + L  N +      
Sbjct: 201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN 260

Query: 770 --QIPLELSELNYLAIFNVSYNDLS 792
               P   ++    +  ++  N + 
Sbjct: 261 DFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.6 bits (135), Expect = 5e-09
 Identities = 48/238 (20%), Positives = 81/238 (34%), Gaps = 15/238 (6%)

Query: 85  GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNL-GVGFKPMKVLPNLRNLEVL 143
            +LK L  L +  N  S+        L  L  L+L  N L  +  K  K L  LR  E  
Sbjct: 52  KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENE 111

Query: 144 DLSGNGLIGSLTMQGEKLELLNNKCREMNAR---ICELKNLVELNLSWNKLDGSLPQCLS 200
                  + +   Q   +EL  N  +           +K L  + ++   +         
Sbjct: 112 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP 171

Query: 201 NLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQI 260
           +LT    L L  N+++     +    L +L  L LS N+     +   LAN   L  L +
Sbjct: 172 SLTE---LHLDGNKITKVDA-ASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHL 226

Query: 261 SRLQIETENFPWLPRFQLKVLNLRRCNISG------TIPSFLQYQYDLRYIDLSHNNL 312
           +  ++            ++V+ L   NIS         P +   +     + L  N +
Sbjct: 227 NNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.8 bits (133), Expect = 7e-09
 Identities = 49/288 (17%), Positives = 94/288 (32%), Gaps = 50/288 (17%)

Query: 511 SVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMT 570
            VP        +LD+  NK+    +  F +  +L  L L NN ++   P A     +L  
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 83

Query: 571 LDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSI 630
           L L  N+       +      LR        ++ ++   L  +  + +         G  
Sbjct: 84  LYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-GIE 142

Query: 631 PSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEV 690
              F  +                                                +++  
Sbjct: 143 NGAFQGM------------------------------------------------KKLSY 154

Query: 691 KFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRS 750
             +A     +   G+   +T L L  N++T    +++  L  L  L LS N +S     S
Sbjct: 155 IRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 214

Query: 751 FSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNT 798
            +N   +  + L+ NKL  ++P  L++  Y+ +  +  N++S    N 
Sbjct: 215 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 261

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.0 bits (131), Expect = 1e-08
 Identities = 37/216 (17%), Positives = 73/216 (33%), Gaps = 4/216 (1%)

Query: 423 SLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNML 482
             A +++ +N         + ++  L  L L +N+ +            L  L +S N L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 483 SGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSS 542
                        L V       +   V   L+ + V   L  +  K  G    +F    
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV-VELGTNPLKSSGIENGAFQGMK 150

Query: 543 SLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNL 602
            L ++ + + ++  +IP  L  S  L  L L  N+ +      +   +NL  L L  N++
Sbjct: 151 KLSYIRIADTNIT-TIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 603 QGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIW 638
                  L +   +  + ++ N L         + +
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 243

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 4e-08
 Identities = 41/211 (19%), Positives = 69/211 (32%), Gaps = 9/211 (4%)

Query: 345 DSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDL 404
                 L +     N    LP +   +  +   L +S+N        ++    RL  L+L
Sbjct: 7   SKVASHLEVNCDKRNLTA-LPPD---LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 405 SSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEE 464
                +       L    +L   +               ++  L  L ++ N+ T     
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSL----PLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 465 GLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILD 524
            L     L  L +  N L    P  +     L+ L ++ N+L    +  L+ L+    L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 525 ISENKLYGPLEFSFNHSSSLWHLFLHNNSLN 555
           + EN LY  +   F  S  L   FLH N   
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 8e-08
 Identities = 28/232 (12%), Positives = 58/232 (25%), Gaps = 28/232 (12%)

Query: 537 SFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALL 596
             +  +S   +     +L  ++P  L +      L L +N         +   + L  L 
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 597 LRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTL 656
           L    L          +     +  +       +      +       +       G   
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 657 VVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSS 716
            +     +    N    L           +++ +                        ++
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL------------------------AN 157

Query: 717 NELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLR 768
           N LT      +  L+ L  L L  N L  +IP+ F    ++    L  N   
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 5e-07
 Identities = 32/183 (17%), Positives = 51/183 (27%), Gaps = 5/183 (2%)

Query: 179 KNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGN 238
           K+   L+LS N L       L   T L  L+L   +L+          L +L+       
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 239 NFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQY 298
           +               +   +++ L         L           + N   T+P  L  
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLP-----LGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 299 QYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNN 358
                      NN     P  LL     L+ L L  N L  +         L    +  N
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

Query: 359 NFI 361
            ++
Sbjct: 206 PWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 6e-05
 Identities = 42/261 (16%), Positives = 67/261 (25%), Gaps = 58/261 (22%)

Query: 174 RICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYL 233
            + ++ + +E+N     L  +LP  L       +L L+ N L     ++     T L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYT-FSLATLMPYTRLTQL 60

Query: 234 SLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIP 293
           +L                                          L VL     + +    
Sbjct: 61  NLDRAEL-----------------------------TKLQVDGTLPVLGTLDLSHNQLQS 91

Query: 294 SFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHL 353
             L  Q       L                           N L  L          L  
Sbjct: 92  LPLLGQTLPALTVLDV-----------------------SFNRLTSLPLGALRGLGELQE 128

Query: 354 VISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGEL 413
           +    N +  LP       P+L  L ++ N+        +     L  L L  N+    +
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187

Query: 414 PKQFLTGCVSLAFMNVSHNYF 434
           PK F  G   L F  +  N +
Sbjct: 188 PKGFF-GSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 37/191 (19%), Positives = 54/191 (28%), Gaps = 30/191 (15%)

Query: 88  KQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEV----- 142
           K   IL++  N      +  L   T LT L L         +    LP L  L++     
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNL-DRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 143 ----------------------LDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKN 180
                                 L     G +  L    E     N         +     
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 181 LVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNF 240
           L +L+L+ N L       L+ L  L  L L  N L   +P   F     L +  L GN +
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGNPW 207

Query: 241 QGSFSLSVLAN 251
             +  +     
Sbjct: 208 LCNCEILYFRR 218

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 37/182 (20%), Positives = 63/182 (34%), Gaps = 4/182 (2%)

Query: 446 TQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNS 505
                L+L++N         L+    L  L++            V     +   L   ++
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE---LTKLQVDGTLPVLGTLDLSHN 87

Query: 506 LEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS 565
               + +    L    +LD+S N+L      +      L  L+L  N L    P  L  +
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 566 SQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNL 625
            +L  L L +N  +     L+N   NL  LLL+ N+L   IP+       +    +  N 
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206

Query: 626 LD 627
             
Sbjct: 207 WL 208

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 2e-07
 Identities = 40/281 (14%), Positives = 87/281 (30%), Gaps = 16/281 (5%)

Query: 521 RILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSG 580
           + LD++   L+ P       S  +       + ++  +    F   ++  +DL ++    
Sbjct: 3   QTLDLTGKNLH-PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV 60

Query: 581 N-IPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWP 639
           + +  ++++ S L+ L L G  L   I   L     +  V ++ +   G        +  
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL--VRLNLSGCSGFSEFALQTLLS 118

Query: 640 WMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYE 699
                D  N              A++    +   L  SG              + K+   
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK----------NLQKSDLS 168

Query: 700 SYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSH-NHLSGSIPRSFSNLKMIE 758
           +        +      S  L  +       L  L  L+LS    +          +  ++
Sbjct: 169 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 228

Query: 759 SMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTK 799
           ++ +      G + L    L +L I    +  ++ PT   K
Sbjct: 229 TLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNK 269

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 3e-07
 Identities = 39/278 (14%), Positives = 87/278 (31%), Gaps = 18/278 (6%)

Query: 352 HLVISNNNFIGMLPDNFGMILPE-LVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFS 410
            L ++  N     PD  G +L + ++     ++  +  +        R+  +DLS++   
Sbjct: 4   TLDLTGKNL---HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIE 59

Query: 411 GELPKQFLTGCVSLAFMNVSHNYFGGQIFP--------KYMSMTQLAWLYLNDNQFTGRL 462
                  L+ C  L  +++        I            ++++  +       Q     
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 463 EEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARI 522
              L         D +   +   + H     + L++    +N  + D+S  +        
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 523 LDISENKLYGP-LEFSFNHSSSLWHLFLHN-NSLNGSIPSALFQSSQLMTLDLRDNEFSG 580
           LD+S++ +        F   + L HL L     +       L +   L TL +      G
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239

Query: 581 NIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAI 618
            +  L      L  L +  ++        + + +   I
Sbjct: 240 TLQLLK---EALPHLQINCSHFTTIARPTIGNKKNQEI 274

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 1e-05
 Identities = 45/269 (16%), Positives = 90/269 (33%), Gaps = 23/269 (8%)

Query: 143 LDLSGNGL----IGSLTMQGEK-LELLNNKCREMNARICELKNLVELNLSWNKL-DGSLP 196
           LDL+G  L     G L  QG        +   +  A       +  ++LS + +   +L 
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH 64

Query: 197 QCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSL--------SGNNFQGSFSLSV 248
             LS  + L+ L L   +LS  +  +  A  ++L  L+L               S    +
Sbjct: 65  GILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 249 LANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLS 308
              +         +              QL +   R+      + + ++   +L ++DLS
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183

Query: 309 HNNLAGTFPTWLLQNNTKLEFLFLFNNFL---KGLLHLPDSKRDLLHLVISNNNFIGMLP 365
            + +              L+ L L   +    + LL L +    L  L +       +  
Sbjct: 184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT-LKTLQVFGI----VPD 238

Query: 366 DNFGMILPELVYLDMSQNSFEGSIPPSMG 394
               ++   L +L ++ + F     P++G
Sbjct: 239 GTLQLLKEALPHLQINCSHFTTIARPTIG 267

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 1e-05
 Identities = 39/242 (16%), Positives = 77/242 (31%), Gaps = 13/242 (5%)

Query: 184 LNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGS 243
           L+L+   L    P     L    V+     +   + P++   +   ++++ LS +  + S
Sbjct: 5   LDLTGKNL---HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 244 FSLSVLANHSRLEVLQISRLQIETENFPWLPRF-QLKVLNLRRCNISGTIPSF------- 295
               +L+  S+L+ L +  L++       L +   L  LNL  C+               
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 296 -LQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLV 354
            L         D +  ++                  +  N     L  L     +L+HL 
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 355 ISNNNFIGMLPDNFGMILPELVYLDMSQ-NSFEGSIPPSMGYTVRLLFLDLSSNNFSGEL 413
           +S++  +          L  L +L +S+           +G    L  L +      G L
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 414 PK 415
             
Sbjct: 242 QL 243

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 39/285 (13%), Positives = 90/285 (31%), Gaps = 30/285 (10%)

Query: 93  LNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIG 152
           L++   +    +   L S   + +     + +    +P+    +   ++ +DLS + +  
Sbjct: 5   LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMD---QPLAEHFSPFRVQHMDLSNSVIEV 60

Query: 153 SLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTS 212
           S                 ++  + +   L  L+L   +L   +   L+  + L  L+L+ 
Sbjct: 61  S----------------TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 104

Query: 213 NQ-LSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLA-------NHSRLEVLQISRLQ 264
               S     ++ ++ + L+ L+LS         + V             L   + +  +
Sbjct: 105 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 164

Query: 265 IETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNN 324
            +           + +       +             L+++ LS            L   
Sbjct: 165 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 224

Query: 325 TKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFG 369
             L+ L +F     G   L   K  L HL I+ ++F  +     G
Sbjct: 225 PTLKTLQVFGIVPDG--TLQLLKEALPHLQINCSHFTTIARPTIG 267

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 4e-07
 Identities = 52/348 (14%), Positives = 95/348 (27%), Gaps = 31/348 (8%)

Query: 174 RICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYL 233
           R C  +   EL L+   L  SLP+   +L  L     + N L+      +     SL+ L
Sbjct: 33  RDCLDRQAHELELNNLGL-SSLPELPPHLESL---VASCNSLT-----ELPELPQSLKSL 83

Query: 234 SLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIP 293
            +  NN +             L  L      +   N       +L+  +  +        
Sbjct: 84  LVDNNNLKA------------LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS 131

Query: 294 SFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHL 353
                        ++  N        L             N+  K        +  +   
Sbjct: 132 LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGN 191

Query: 354 VISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGEL 413
            I               I  +   L    +        ++         +L  +    ++
Sbjct: 192 NILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDV 251

Query: 414 PKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLH 473
            +   +G   L       N    +I         L  L +++N+    L       P L 
Sbjct: 252 SENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLE 307

Query: 474 ILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVP--LSNLQV 519
            L  S N L+ ++P    N   L V     N L     +P  + +L++
Sbjct: 308 RLIASFNHLA-EVPELPQNLKQLHV---EYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 1e-06
 Identities = 56/340 (16%), Positives = 95/340 (27%), Gaps = 30/340 (8%)

Query: 277 QLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNF 336
           Q   L L    +S ++P        L  +  S N+L     T L +    L+ L + NN 
Sbjct: 39  QAHELELNNLGLS-SLPELPP---HLESLVASCNSL-----TELPELPQSLKSLLVDNNN 89

Query: 337 LKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYT 396
           LK L  LP        L     +   +           L  +D+  NS +          
Sbjct: 90  LKALSDLPPL------LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE 143

Query: 397 VRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDN 456
                 +        +              +    +           +        L + 
Sbjct: 144 FIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNL 203

Query: 457 QFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSN 516
            F   +        +L  L  S   L+ +  +           L    +         S 
Sbjct: 204 PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPE-----LPQSLTFLDVSENIFSG 258

Query: 517 LQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDN 576
           L          N     +    +   SL  L + NN L   +P+      +L  L    N
Sbjct: 259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFN 314

Query: 577 EFSGNIPPLINEDSNLRALLLRGNNLQG--NIPQQLCHLR 614
             +  +P L     NL+ L +  N L+   +IP+ +  LR
Sbjct: 315 HLA-EVPELP---QNLKQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 58/333 (17%), Positives = 96/333 (28%), Gaps = 25/333 (7%)

Query: 461 RLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVA 520
           RL + L      H L+++N  LS  LP    +  +L     S NSL  ++     +L+  
Sbjct: 31  RLRDCLDR--QAHELELNNLGLS-SLPELPPHLESLVA---SCNSLT-ELPELPQSLKSL 83

Query: 521 RILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSG 580
            + + +   L                L     S N        Q+S  + +   DN    
Sbjct: 84  LVDNNNLKALS----------DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK 133

Query: 581 NIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPW 640
            +P L      + A   +   L                  +                   
Sbjct: 134 KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNI 193

Query: 641 MEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYES 700
           +EE        F  T+  ++    +           +  DN         + +       
Sbjct: 194 LEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSE 253

Query: 701 YKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESM 760
                L  +       N  + EI S       L  LN+S+N L   +P     L   E +
Sbjct: 254 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERL 309

Query: 761 DLSYNKLRGQIPLELSELNYLAIFNVSYNDLSG 793
             S+N L  ++P     L  L   +V YN L  
Sbjct: 310 IASFNHL-AEVPELPQNLKQL---HVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 6e-05
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 9/78 (11%)

Query: 165 NNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVF 224
           N    E+ +      +L ELN+S NKL   LP     L  L     + N L+      V 
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA-----EVP 320

Query: 225 ANLTSLEYLSLSGNNFQG 242
               +L+ L +  N  + 
Sbjct: 321 ELPQNLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 5e-04
 Identities = 59/361 (16%), Positives = 103/361 (28%), Gaps = 47/361 (13%)

Query: 138 RNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQ 197
           R    L+L+  GL  SL                         +L  L  S N L   LP+
Sbjct: 38  RQAHELELNNLGL-SSLPE--------------------LPPHLESLVASCNSLT-ELPE 75

Query: 198 CLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEV 257
              +        L S  +  N   ++      LEYL +S N  +    L   +   ++  
Sbjct: 76  LPQS--------LKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFL-KIID 126

Query: 258 LQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFP 317
           +  + L+   +  P L         L        +P       D   +    +       
Sbjct: 127 VDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLES 186

Query: 318 TWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVY 377
                N  +         FL  +    +  + L  L  S             +       
Sbjct: 187 IVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLP------ 240

Query: 378 LDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQ 437
            ++ Q+     +  ++   +  L  +L   N S    +       SL  +NVS+N     
Sbjct: 241 -ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL--I 297

Query: 438 IFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLD 497
             P      +L  L  + N     + E      +L  L V  N L  + P    +  +L 
Sbjct: 298 ELPA--LPPRLERLIASFNHLA-EVPELP---QNLKQLHVEYNPLR-EFPDIPESVEDLR 350

Query: 498 V 498
           +
Sbjct: 351 M 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 7e-04
 Identities = 61/357 (17%), Positives = 102/357 (28%), Gaps = 35/357 (9%)

Query: 195 LPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSR 254
           L  CL        L+L +  LS     S+      LE L  S N+      L  L    +
Sbjct: 32  LRDCLDR--QAHELELNNLGLS-----SLPELPPHLESLVASCNSLT---ELPELPQSLK 81

Query: 255 LEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAG 314
             ++  + L+  ++  P L             N        LQ    L+ ID+ +N+L  
Sbjct: 82  SLLVDNNNLKALSDLPPLLEYLG-------VSNNQLEKLPELQNSSFLKIIDVDNNSLKK 134

Query: 315 TFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPE 374
                            L        L    +     + +    +    L          
Sbjct: 135 LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL 194

Query: 375 LVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYF 434
               ++    F  +I         L  L  S    +                       F
Sbjct: 195 EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDL------PELPQSLTF 248

Query: 435 GGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFS 494
                  +  +++L       N  +  +       PSL  L+VSNN L  +LP       
Sbjct: 249 LDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP---ALPP 304

Query: 495 NLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHN 551
            L+ L+ S N L  +V     NL+    L +  N L    +       S+  L +++
Sbjct: 305 RLERLIASFNHLA-EVPELPQNLKQ---LHVEYNPLREFPDI----PESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 52/323 (16%), Positives = 94/323 (29%), Gaps = 22/323 (6%)

Query: 324 NTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMI---------LPE 374
           + +   L L N    GL  LP+    L  LV S N+ +  LP+    +         L  
Sbjct: 37  DRQAHELELNNL---GLSSLPELPPHLESLVASCNS-LTELPELPQSLKSLLVDNNNLKA 92

Query: 375 LVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYF 434
           L  L         S               L   +      K+      SL F+   +N  
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 435 GGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFS 494
                 + +      +   N  +    L   L +  + + +      L            
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 495 NLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSL 554
           N  +  +       +      N                  E  F+  S L     + N+ 
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 555 NGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLR 614
           +  I S       L  L++ +N+    +P L      L  L+   N+L   +P+   +L+
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLA-EVPELPQNLK 327

Query: 615 KIAIVDISYNLLDGSIPSCFTNI 637
           ++    + YN L    P    ++
Sbjct: 328 QL---HVEYNPLR-EFPDIPESV 346

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 10/93 (10%)

Query: 58  WVDNRTSDCCSWERIKCNVTTANYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSL 117
            + +  S+           +    +       L+ LN+  N   E    L      L  L
Sbjct: 254 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE----LPALPPRLERL 309

Query: 118 FLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGL 150
               N+L       +V    +NL+ L +  N L
Sbjct: 310 IASFNHLA------EVPELPQNLKQLHVEYNPL 336

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.2 bits (116), Expect = 4e-07
 Identities = 34/204 (16%), Positives = 66/204 (32%), Gaps = 18/204 (8%)

Query: 178 LKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSG 237
               ++ NL    +  ++ Q  + L  +  +   ++ +     I     L ++  L L+G
Sbjct: 23  FAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQ---YLPNVTKLFLNG 77

Query: 238 NNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQ 297
           N       L+ L N           L           +   K+ +L   +   +  + L 
Sbjct: 78  NKLTDIKPLANLKNL------GWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 131

Query: 298 YQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISN 357
           +   L  + L +N +        L     L       + +  L  L      L +L +S 
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT----KLQNLYLSK 187

Query: 358 NNFIGMLPDNFGMILPELVYLDMS 381
           N+ I  L    G  L  L  L++ 
Sbjct: 188 NH-ISDLRALAG--LKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 38/196 (19%), Positives = 68/196 (34%), Gaps = 29/196 (14%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDL 145
           +  +    N+   S ++        L S+  +    +++    K ++ +  L N+  L L
Sbjct: 22  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDI----KSVQGIQYLPNVTKLFL 75

Query: 146 SGNGLIGSLTMQG-EKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTY 204
           +GN L     +   + L  L     ++             +LS      S    L +L  
Sbjct: 76  NGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ 135

Query: 205 LRVLDLTSNQLSGNLP-------------------ISVFANLTSLEYLSLSGNNFQGSFS 245
           L  L L +N+++                       I   A LT L+ L LS N+      
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS---D 192

Query: 246 LSVLANHSRLEVLQIS 261
           L  LA    L+VL++ 
Sbjct: 193 LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 25/198 (12%), Positives = 68/198 (34%), Gaps = 13/198 (6%)

Query: 566 SQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNL 625
           ++ +  +L+    +  +    NE +++  ++   ++++      + +L  +  + ++ N 
Sbjct: 24  AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK 79

Query: 626 LDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELR 685
           L    P        W+   +     +                  S  +   S  +     
Sbjct: 80  LTDIKPLANLKNLGWLFLDENKVKDLS------SLKDLKKLKSLSLEHNGISDINGLVHL 133

Query: 686 QRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSG 745
            ++E  ++  N+                   +    +I   +  L +L  L LS NH+S 
Sbjct: 134 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISD 192

Query: 746 SIPRSFSNLKMIESMDLS 763
              R+ + LK ++ ++L 
Sbjct: 193 --LRALAGLKNLDVLELF 208

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 4e-06
 Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 142 VLDLSGNGL-----IGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLP 196
           VL L+   L     +  L      L+L +N+ R +   +  L+ L  L  S N L+    
Sbjct: 2   VLHLAHKDLTVLCHLEQLL-LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 197 QCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQG 242
               NL  L+ L L +N+L  +  I    +   L  L+L GN+   
Sbjct: 61  VA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 6e-05
 Identities = 32/146 (21%), Positives = 51/146 (34%), Gaps = 27/146 (18%)

Query: 91  KILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGL 150
           ++L++     +   +  L  L  +T L L  N L         L  LR LEVL       
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLR---ALPPALAALRCLEVLQ------ 49

Query: 151 IGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKL-DGSLPQCLSNLTYLRVLD 209
                         ++   E    +  L  L EL L  N+L   +  Q L +   L +L+
Sbjct: 50  -------------ASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 96

Query: 210 LTSNQLSG--NLPISVFANLTSLEYL 233
           L  N L     +   +   L S+  +
Sbjct: 97  LQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 6e-05
 Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 32/147 (21%)

Query: 206 RVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSF-SLSVLANHSRLEVLQISRLQ 264
           RVL L    L+    +     L  + +L LS N  +    +L+ L     L+    +   
Sbjct: 1   RVLHLAHKDLTV---LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 57

Query: 265 IETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNN 324
           ++        +                             + L +N L  +     L + 
Sbjct: 58  VDGVANLPRLQ----------------------------ELLLCNNRLQQSAAIQPLVSC 89

Query: 325 TKLEFLFLFNNFLKGLLHLPDSKRDLL 351
            +L  L L  N L     + +   ++L
Sbjct: 90  PRLVLLNLQGNSLCQEEGIQERLAEML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 7/109 (6%)

Query: 377 YLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGG 436
            L ++      ++   +   + +  LDLS N      P   L     L  +  S N    
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP--ALAALRCLEVLQASDNAL-- 55

Query: 437 QIFPKYMSMTQLAWLYLNDNQFTG-RLEEGLLNAPSLHILDVSNNMLSG 484
           +      ++ +L  L L +N+       + L++ P L +L++  N L  
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 5e-04
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 7/111 (6%)

Query: 303 RYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIG 362
           R + L+H +L        L+    +  L L +N L+ L   P +   L  L +   +   
Sbjct: 1   RVLHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLRAL---PPALAALRCLEVLQASDNA 54

Query: 363 MLPDNFGMILPELVYLDMSQNSFEG-SIPPSMGYTVRLLFLDLSSNNFSGE 412
           +   +    LP L  L +  N  +  +    +    RL+ L+L  N+   E
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 279 KVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLK 338
           +VL+L   ++  T+   L+    + ++DLSHN L    P         L  L +      
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPAL-----AALRCLEVLQASDN 53

Query: 339 GLLHLPDSKRD--LLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEG 387
            L ++        L  L++ NN           +  P LV L++  NS   
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 46.2 bits (108), Expect = 4e-06
 Identities = 34/196 (17%), Positives = 66/196 (33%), Gaps = 27/196 (13%)

Query: 194 SLPQCLSNL---TYLRVLDLTSNQLSGNLPI-----SVFANLTSLEYLSLSGNNFQGSFS 245
           ++   +        +   +    +L G +P      +  + L + ++L+LS NN +    
Sbjct: 6   TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE---K 62

Query: 246 LSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYI 305
           +S L+    L +L +   +   +    L      +  L          S ++   +LR +
Sbjct: 63  ISSLSGMENLRILSLG--RNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVL 120

Query: 306 DLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLP 365
            +S+N +        L    KLE L L  N L       ++  +    V+          
Sbjct: 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR-------- 172

Query: 366 DNFGMILPELVYLDMS 381
                 LP L  LD  
Sbjct: 173 ------LPNLKKLDGM 182

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 17/146 (11%), Positives = 44/146 (30%), Gaps = 1/146 (0%)

Query: 375 LVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYF 434
              L  +++         +     L  L + +      L  + L G   L  + +  +  
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 435 GGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFS 494
                  +    +L+ L L+ N       + +       ++   N +       W+  + 
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWE 128

Query: 495 NLDVLLMSRNSLEGDVSVPLSNLQVA 520
              +  +    L+     PL+++  A
Sbjct: 129 EEGLGGVPEQKLQCHGQGPLAHMPNA 154

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 2/108 (1%)

Query: 710 TGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPR-SFSNLKMIESMDLSYNKLR 768
           +GL  + +    +    +   + L  L + +      +       L  + ++ +  + LR
Sbjct: 11  SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 769 GQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLC 816
              P        L+  N+S+N L   +  T Q  +  E    GN   C
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 1/67 (1%)

Query: 176 CELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSL 235
           C       L  + +         L     L  L + + Q   +L +     L  L  L++
Sbjct: 5   CCPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI 63

Query: 236 SGNNFQG 242
             +  + 
Sbjct: 64  VKSGLRF 70

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.7 bits (101), Expect = 7e-05
 Identities = 40/315 (12%), Positives = 89/315 (28%), Gaps = 23/315 (7%)

Query: 88  KQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGV-GFKPM-KVLPNLRNLEVLDL 145
           K LK+  I      +S+  +L    S+  + L GN +G    + + + + + ++LE+ + 
Sbjct: 8   KSLKLDAITTEDE-KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 146 SGNGL----------IGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSL 195
           S              +  L     K   L+      NA     +  +   LS +     L
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 196 PQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRL 255
               + L       +        +      N   L  +    N  +              
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNK-KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 185

Query: 256 EVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGT 315
            +L   ++         +    L+ L   +      +            + ++  +    
Sbjct: 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 245

Query: 316 FPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNF----IGMLPDNFGMI 371
               L              +    L ++      L  L +  N      +  L       
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFSKLENI-----GLQTLRLQYNEIELDAVRTLKTVIDEK 300

Query: 372 LPELVYLDMSQNSFE 386
           +P+L++L+++ N F 
Sbjct: 301 MPDLLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 7e-04
 Identities = 37/315 (11%), Positives = 76/315 (24%), Gaps = 31/315 (9%)

Query: 152 GSLTMQGEKLELLN---NKCREMNARICELKNLVELNLSWNKLDG----SLPQCLSNLTY 204
              +++G+ L+L        + + A + E  ++ E+ LS N +       L + +++   
Sbjct: 1   ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 60

Query: 205 LRVLDLTSNQLS--GNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISR 262
           L + + +        +        L          +  + S +         L       
Sbjct: 61  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 120

Query: 263 LQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQ 322
             +E                + R      +    +    LR I    N L         +
Sbjct: 121 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 180

Query: 323 NNTKLEFLFLFNN------------FLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGM 370
                  L                  L   L      + L     +  +           
Sbjct: 181 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 240

Query: 371 ILPELVYLDMSQNSFEGSIPPSMGYTV------RLLFLDLSSNNFSGE----LPKQFLTG 420
             P L  L ++          ++           L  L L  N    +    L       
Sbjct: 241 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 300

Query: 421 CVSLAFMNVSHNYFG 435
              L F+ ++ N F 
Sbjct: 301 MPDLLFLELNGNRFS 315

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 8e-05
 Identities = 36/221 (16%), Positives = 68/221 (30%), Gaps = 57/221 (25%)

Query: 86  SLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDL 145
           +L     +  G ++ ++++      L  +T+L   G  +      ++ +  L NL  L+L
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV----TTIEGVQYLNNLIGLEL 70

Query: 146 SGNGLIGSLTMQGEKLEL------------------------------------------ 163
             N +     ++                                                
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 164 ---LNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLP 220
              L     ++              LS      S    L+NL+ L  L    N++S    
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--- 187

Query: 221 ISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQIS 261
           IS  A+L +L  + L  N       +S LAN S L ++ ++
Sbjct: 188 ISPLASLPNLIEVHLKNNQISD---VSPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 25/221 (11%), Positives = 63/221 (28%), Gaps = 14/221 (6%)

Query: 566 SQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNL 625
           +  + +    +  +  +     +   +  L   G  +     + + +L  +  +++  N 
Sbjct: 19  ANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQ 74

Query: 626 LDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELR 685
           +    P         +E        V     +             T     +G  N ++ 
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134

Query: 686 QRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSG 745
                +    +            +    +S         + +  L +L  L    N +S 
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVS-------DLTPLANLSKLTTLKADDNKISD 187

Query: 746 SIPRSFSNLKMIESMDLSYNKLRGQIPLE-LSELNYLAIFN 785
             P   ++L  +  + L  N++    PL   S L  + + N
Sbjct: 188 ISP--LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 15/222 (6%)

Query: 542 SSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNN 601
           ++   +    +++  ++  A      + TL       +  I  +    +NL  L L+ N 
Sbjct: 19  ANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGVQYL-NNLIGLELKDNQ 74

Query: 602 LQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHF 661
           +    P +         +  +         S    +                  L     
Sbjct: 75  ITDLAPLKNLTKITELELSGNPL----KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 662 PAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTG 721
             +     + +  I        L+          +         L  +       N+++ 
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA---DDNKISD 187

Query: 722 EIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLS 763
             P  +  L  L  ++L +N +S   P   +N   +  + L+
Sbjct: 188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 35/237 (14%), Positives = 73/237 (30%), Gaps = 8/237 (3%)

Query: 174 RICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYL 233
           RIC   N V      +K+   +P  L        L     +L   +    F+    LE +
Sbjct: 4   RICHCSNRV-FLCQESKVT-EIPSDLP--RNAIELRFVLTKLRV-IQKGAFSGFGDLEKI 58

Query: 234 SLSGNNFQ---GSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISG 290
            +S N+      +   S L     + + + + L                +L         
Sbjct: 59  EISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL 118

Query: 291 TIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDL 350
                +     +      + N+        +  + +   L+L  N ++ + +   +   L
Sbjct: 119 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQL 178

Query: 351 LHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSN 407
             L +S+NN +  LP++        V LD+S+          +    +L      + 
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 8e-04
 Identities = 28/225 (12%), Positives = 59/225 (26%), Gaps = 10/225 (4%)

Query: 570 TLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGS 629
               ++++ +  IP  +    N   L      L+            +  ++IS N +   
Sbjct: 12  VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68

Query: 630 IPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGE-------DNR 682
           I +   +  P + E          Y          +  Y    N               +
Sbjct: 69  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 128

Query: 683 ELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNH 742
           ++   ++          +   G+      L L+ N +      A    Q        +N+
Sbjct: 129 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN 188

Query: 743 LSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVS 787
           L       F        +D+S  ++       L  L  L   +  
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 9e-04
 Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 1/74 (1%)

Query: 165 NNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVF 224
           N      N      +         N L+          +   +LD++  ++  +LP    
Sbjct: 163 NGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGL 221

Query: 225 ANLTSLEYLSLSGN 238
            NL  L   S    
Sbjct: 222 ENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 20/231 (8%), Positives = 51/231 (22%), Gaps = 10/231 (4%)

Query: 543 SLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNL 602
           S        + +   IPS L ++   + L     +         +   +L  + +  N++
Sbjct: 9   SNRVFLCQESKVT-EIPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 603 QGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFP 662
              I   +                +    +          +    +     +   V    
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 663 AISAYYNSTLNLIFSGEDNRELRQ-------RVEVKFMAKNRYESYKGGVLEYMTGLDLS 715
           ++        + I      R            + +         +      +        
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 716 SNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNK 766
           +N L                L++S   +         NLK + +      K
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.003
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 710 TGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRG 769
                  +++T EIPS +   +    L      L      +FS    +E +++S N +  
Sbjct: 11  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 770 QI 771
            I
Sbjct: 68  VI 69

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 38/192 (19%), Positives = 65/192 (33%), Gaps = 29/192 (15%)

Query: 87  LKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLS 146
           L +     +G  + ++      T L  +T+L  +   +    K +  +  L NL  ++ S
Sbjct: 17  LAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGI----KSIDGVEYLNNLTQINFS 70

Query: 147 GNGLIGSLTMQGEKL--------------------ELLNNKCREMNARICELKNLVELNL 186
            N L     ++                          L       N            NL
Sbjct: 71  NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 130

Query: 187 SWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSL 246
           +  +L  +    +S L+ L  L   +   +    +   ANLT+LE L +S N       +
Sbjct: 131 NRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVS---DI 187

Query: 247 SVLANHSRLEVL 258
           SVLA  + LE L
Sbjct: 188 SVLAKLTNLESL 199

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 28/191 (14%), Positives = 56/191 (29%), Gaps = 30/191 (15%)

Query: 388 SIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQ 447
            IP  +        L L+ N                L  + +  N   G     +   + 
Sbjct: 22  EIPRDIPLHTT--ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 448 LAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLE 507
           +  L L +N+      +  L    L  L++ +N +S  +P    + ++L  L ++ N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 508 GDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQ 567
            +  +                            +  L    L+  +     PS +     
Sbjct: 140 CNCHL-------------------------AWFAEWLRKKSLNGGAARCGAPSKV---RD 171

Query: 568 LMTLDLRDNEF 578
           +   DL  +EF
Sbjct: 172 VQIKDLPHSEF 182

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	883
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.44
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.19
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.17
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.1
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.12
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.56
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.39
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.64
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.64

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=8.4e-38  Score=334.92  Aligned_cols=295  Identities=27%  Similarity=0.463  Sum_probs=204.0

Q ss_pred             CCcHHHHHHHHHhhhcCCcCCcccccCCccCCCCCCCCCCCCc--cceeecCCCCCCCCCCcCCCCCCEEECCCCCCCCC
Q 041908           26 SCLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCS--WERIKCNVTTANYNNNGSLKQLKILNIGFNSFSES  103 (883)
Q Consensus        26 ~c~~~~~~all~~k~~~~~~~~~~~~~~~l~sW~~~~~~~cc~--w~gv~C~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~  103 (883)
                      .|.++||+||++||+++.++       ..+++|. . ++|||.  |+||+|+..++       -.++++|||+++++.+.
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~-------~~l~sW~-~-~~d~C~~~w~gv~C~~~~~-------~~~v~~L~L~~~~l~g~   65 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNP-------TTLSSWL-P-TTDCCNRTWLGVLCDTDTQ-------TYRVNNLDLSGLNLPKP   65 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCC-------GGGTTCC-T-TSCTTTTCSTTEEECCSSS-------CCCEEEEEEECCCCSSC
T ss_pred             CCCHHHHHHHHHHHHHCCCC-------CcCCCCC-C-CCCCCCCcCCCeEEeCCCC-------cEEEEEEECCCCCCCCC
Confidence            49999999999999999643       3689993 3 479994  99999986433       24799999999999884


Q ss_pred             --CchhhcCCCCCCEEeCCC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccchhhhhcCCCC
Q 041908          104 --LVPLLTSLTSLTSLFLEG-NNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKN  180 (883)
Q Consensus       104 --~~~~l~~l~~L~~L~Ls~-n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~  180 (883)
                        +|+.++++++|++|+|++ |++.|. +| ..++++++|++|+|++|++.+..+                 ..+..+.+
T Consensus        66 ~~lp~~l~~L~~L~~L~Ls~~N~l~g~-iP-~~i~~L~~L~~L~Ls~N~l~~~~~-----------------~~~~~~~~  126 (313)
T d1ogqa_          66 YPIPSSLANLPYLNFLYIGGINNLVGP-IP-PAIAKLTQLHYLYITHTNVSGAIP-----------------DFLSQIKT  126 (313)
T ss_dssp             EECCGGGGGCTTCSEEEEEEETTEESC-CC-GGGGGCTTCSEEEEEEECCEEECC-----------------GGGGGCTT
T ss_pred             CCCChHHhcCccccccccccccccccc-cc-cccccccccchhhhcccccccccc-----------------ccccchhh
Confidence              788889999999999986 778776 88 578888888888888888877666                 66777888


Q ss_pred             CCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCC-CEEeccCCcCccccChHhhhcCCCCcEEE
Q 041908          181 LVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSL-EYLSLSGNNFQGSFSLSVLANHSRLEVLQ  259 (883)
Q Consensus       181 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L-~~L~L~~n~l~g~~~~~~l~~l~~L~~L~  259 (883)
                      |+++++++|.+.+.+|..+++++.|+++++++|.++|.+| ..+..+.++ +.+++++|+++|..+. .+.++.      
T Consensus       127 L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip-~~~~~l~~l~~~l~~~~n~l~~~~~~-~~~~l~------  198 (313)
T d1ogqa_         127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMTISRNRLTGKIPP-TFANLN------  198 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC-GGGGCCCTTCCEEECCSSEEEEECCG-GGGGCC------
T ss_pred             hcccccccccccccCchhhccCcccceeeccccccccccc-cccccccccccccccccccccccccc-cccccc------
Confidence            8888888888888888888888888888888888888888 566666664 7777777777755442 222221      


Q ss_pred             ccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcccccccc
Q 041908          260 ISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKG  339 (883)
Q Consensus       260 L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~  339 (883)
                                        ...+++.++...+.+|..+..+++++.+++++|.+.+.+|.                     
T Consensus       199 ------------------~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~---------------------  239 (313)
T d1ogqa_         199 ------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK---------------------  239 (313)
T ss_dssp             ------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG---------------------
T ss_pred             ------------------ccccccccccccccccccccccccccccccccccccccccc---------------------
Confidence                              22334444444445555555555555555555555543332                     


Q ss_pred             cccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCc
Q 041908          340 LLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNN  408 (883)
Q Consensus       340 ~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  408 (883)
                          ...+++|++|++++|++.|.+|+.++. +++|++|+|++|+++|.+|. ++++++|+.+++++|+
T Consensus       240 ----~~~~~~L~~L~Ls~N~l~g~iP~~l~~-L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         240 ----VGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             ----CCCCTTCCEEECCSSCCEECCCGGGGG-CTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             ----cccccccccccCccCeecccCChHHhC-CCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence                112344555555555555566666554 56666666666666665553 4555566666666654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=2e-33  Score=300.68  Aligned_cols=257  Identities=32%  Similarity=0.531  Sum_probs=207.7

Q ss_pred             CCEEECCCCcCCC--CCCccccCCCcccEEecCC-CcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEe
Q 041908          496 LDVLLMSRNSLEG--DVSVPLSNLQVARILDISE-NKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLD  572 (883)
Q Consensus       496 L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~  572 (883)
                      ++.|+|++|.++|  .+|..++++++|++|+|++ |+++|.+|..+..+++|++|+|++|++.+..+..+..+..|+.++
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence            4445555555544  2455566666666666654 566666666677777777777777777777777777788888888


Q ss_pred             ccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCC-CEEEcCCCcCCCCCCcccccccccccCCCCCCCcc
Q 041908          573 LRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKI-AIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFV  651 (883)
Q Consensus       573 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L-~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~  651 (883)
                      +++|++.+.+|..+++++.|+.+++++|.+.|.+|..+..+..+ +.+++++|++++..|..+.++              
T Consensus       132 l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l--------------  197 (313)
T d1ogqa_         132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--------------  197 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC--------------
T ss_pred             cccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc--------------
Confidence            88888888888888888888888888888888888888877765 788888888887777654331              


Q ss_pred             cccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccc
Q 041908          652 FGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQ  731 (883)
Q Consensus       652 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~  731 (883)
                                                                              ....++++++.+.|.+|..++.++
T Consensus       198 --------------------------------------------------------~~~~l~l~~~~~~~~~~~~~~~~~  221 (313)
T d1ogqa_         198 --------------------------------------------------------NLAFVDLSRNMLEGDASVLFGSDK  221 (313)
T ss_dssp             --------------------------------------------------------CCSEEECCSSEEEECCGGGCCTTS
T ss_pred             --------------------------------------------------------cccccccccccccccccccccccc
Confidence                                                                    234689999999999999999999


Q ss_pred             cCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCCCccCCCCCCcccCC
Q 041908          732 ELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRG  811 (883)
Q Consensus       732 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~g  811 (883)
                      .|+.+++++|.+++.+| .++.+++|+.|||++|+++|.+|.++.++++|++|||++|+|+|.||+.+.+..+....+.|
T Consensus       222 ~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~  300 (313)
T d1ogqa_         222 NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN  300 (313)
T ss_dssp             CCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCS
T ss_pred             ccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCC
Confidence            99999999999998776 58999999999999999999999999999999999999999999999988888999899999


Q ss_pred             CcCCCCCCCCCCC
Q 041908          812 NLNLCGPAVLKNC  824 (883)
Q Consensus       812 n~~lc~~~~~~~c  824 (883)
                      |+.+||.|++ .|
T Consensus       301 N~~l~g~plp-~c  312 (313)
T d1ogqa_         301 NKCLCGSPLP-AC  312 (313)
T ss_dssp             SSEEESTTSS-CC
T ss_pred             CccccCCCCC-CC
Confidence            9999999875 56

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=2.3e-26  Score=253.12  Aligned_cols=341  Identities=20%  Similarity=0.238  Sum_probs=213.9

Q ss_pred             CCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCE
Q 041908          347 KRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAF  426 (883)
Q Consensus       347 ~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~  426 (883)
                      +.+|++|+++++.+.. + +.+.. +++|++|++++|++++ +| .++++++|++|++++|++. .+++  +..+++|+.
T Consensus        43 l~~l~~L~l~~~~I~~-l-~gl~~-L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~-~i~~--l~~l~~L~~  114 (384)
T d2omza2          43 LDQVTTLQADRLGIKS-I-DGVEY-LNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIA-DITP--LANLTNLTG  114 (384)
T ss_dssp             HTTCCEEECCSSCCCC-C-TTGGG-CTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CCGG--GTTCTTCCE
T ss_pred             hCCCCEEECCCCCCCC-c-ccccc-CCCCCEEeCcCCcCCC-Cc-cccCCcccccccccccccc-cccc--ccccccccc
Confidence            3455566666555542 2 22322 5556666666665553 22 2555555666666666555 2322  245555555


Q ss_pred             EEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcC
Q 041908          427 MNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSL  506 (883)
Q Consensus       427 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l  506 (883)
                      |+++++.+++..+  ......+.......|.+....+................     .....+.............|..
T Consensus       115 L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  187 (384)
T d2omza2         115 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----TDLKPLANLTTLERLDISSNKV  187 (384)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----CCCGGGTTCTTCCEEECCSSCC
T ss_pred             ccccccccccccc--cccccccccccccccccccccccccccccccccccccc-----chhhhhcccccccccccccccc
Confidence            5555555544322  12233444444444444332222111111111111111     1112344445555555555544


Q ss_pred             CCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccc
Q 041908          507 EGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLI  586 (883)
Q Consensus       507 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l  586 (883)
                      .  ....+..+++++.+++++|.+++..|  +..+++|++|++++|+++. + +.+..+++|+.|++++|++++..+  +
T Consensus       188 ~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~  259 (384)
T d2omza2         188 S--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--L  259 (384)
T ss_dssp             C--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             c--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc--c
Confidence            3  23446677788888888888877654  3456678888888888763 3 356777888888888888876433  6


Q ss_pred             cCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhh
Q 041908          587 NEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISA  666 (883)
Q Consensus       587 ~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (883)
                      +.+++|++|++++|++++..  .+..++.++.++++.|.+++. + .+                                
T Consensus       260 ~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~-~-~~--------------------------------  303 (384)
T d2omza2         260 SGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI-S-PI--------------------------------  303 (384)
T ss_dssp             TTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC-G-GG--------------------------------
T ss_pred             cccccCCEeeccCcccCCCC--ccccccccccccccccccccc-c-cc--------------------------------
Confidence            67788888888888887533  366777788888888777541 1 01                                


Q ss_pred             hccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcC
Q 041908          667 YYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGS  746 (883)
Q Consensus       667 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~  746 (883)
                                                           ..++.++.|++++|++++..|  +..+++|+.|+|++|++++ 
T Consensus       304 -------------------------------------~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-  343 (384)
T d2omza2         304 -------------------------------------SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-  343 (384)
T ss_dssp             -------------------------------------GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-
T ss_pred             -------------------------------------chhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC-
Confidence                                                 125678899999999996543  8899999999999999985 


Q ss_pred             CCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCC
Q 041908          747 IPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYN  789 (883)
Q Consensus       747 ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N  789 (883)
                      +| .++++++|++||+++|++++.+|  +.++++|+.|++++|
T Consensus       344 l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         344 VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            44 69999999999999999998765  889999999999988

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=5.2e-26  Score=250.21  Aligned_cols=319  Identities=21%  Similarity=0.243  Sum_probs=215.8

Q ss_pred             CCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCE
Q 041908          347 KRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAF  426 (883)
Q Consensus       347 ~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~  426 (883)
                      +++|++|++++|++++. |. +. .+++|++|++++|++.+. + .++.+++|+.|+++++.+++. +..  .....+..
T Consensus        65 L~nL~~L~Ls~N~l~~l-~~-l~-~L~~L~~L~L~~n~i~~i-~-~l~~l~~L~~L~~~~~~~~~~-~~~--~~~~~~~~  136 (384)
T d2omza2          65 LNNLTQINFSNNQLTDI-TP-LK-NLTKLVDILMNNNQIADI-T-PLANLTNLTGLTLFNNQITDI-DPL--KNLTNLNR  136 (384)
T ss_dssp             CTTCCEEECCSSCCCCC-GG-GT-TCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-GGG--TTCTTCSE
T ss_pred             CCCCCEEeCcCCcCCCC-cc-cc-CCcccccccccccccccc-c-ccccccccccccccccccccc-ccc--cccccccc
Confidence            34444444444444432 21 32 266777777777776633 2 266677777777777766632 221  24455666


Q ss_pred             EEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcC
Q 041908          427 MNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSL  506 (883)
Q Consensus       427 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l  506 (883)
                      .....|.+.......................     ...+...+.........|...  .+..+..+++++.+++++|.+
T Consensus       137 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i  209 (384)
T d2omza2         137 LELSSNTISDISALSGLTSLQQLSFGNQVTD-----LKPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQI  209 (384)
T ss_dssp             EEEEEEEECCCGGGTTCTTCSEEEEEESCCC-----CGGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCC
T ss_pred             cccccccccccccccccccccccccccccch-----hhhhccccccccccccccccc--cccccccccccceeeccCCcc
Confidence            6666665544333222222222222111111     123344455555666665543  234567778888888888888


Q ss_pred             CCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccc
Q 041908          507 EGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLI  586 (883)
Q Consensus       507 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l  586 (883)
                      ++..|  +..+++|+.|++++|++++.  ..+..+++|+.|++++|.+++..  .+..+++|++|++++|++++..  .+
T Consensus       210 ~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~  281 (384)
T d2omza2         210 SDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PL  281 (384)
T ss_dssp             CCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GG
T ss_pred             CCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--cc
Confidence            76544  45667888888888888753  25677888999999999888543  3778889999999999988643  36


Q ss_pred             cCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhh
Q 041908          587 NEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISA  666 (883)
Q Consensus       587 ~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (883)
                      ..++.++.+.++.|++++  +..+..+++++.|++++|++++..|  +                                
T Consensus       282 ~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~--l--------------------------------  325 (384)
T d2omza2         282 AGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--V--------------------------------  325 (384)
T ss_dssp             TTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCGG--G--------------------------------
T ss_pred             cccccccccccccccccc--ccccchhcccCeEECCCCCCCCCcc--c--------------------------------
Confidence            778899999999999886  3457888999999999998875322  1                                


Q ss_pred             hccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcC
Q 041908          667 YYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGS  746 (883)
Q Consensus       667 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~  746 (883)
                                                           ..+++|+.|+|++|+|++ +| .++++++|++|+|++|++++.
T Consensus       326 -------------------------------------~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l  366 (384)
T d2omza2         326 -------------------------------------SSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDL  366 (384)
T ss_dssp             -------------------------------------GGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBC
T ss_pred             -------------------------------------ccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCC
Confidence                                                 115788999999999984 55 689999999999999999987


Q ss_pred             CCccccCcCCCCEEECCCC
Q 041908          747 IPRSFSNLKMIESMDLSYN  765 (883)
Q Consensus       747 ip~~l~~l~~L~~LdLs~N  765 (883)
                      +|  ++++++|+.|+|++|
T Consensus       367 ~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         367 TP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GG--GTTCTTCSEEECCCE
T ss_pred             hh--hccCCCCCEeeCCCC
Confidence            65  899999999999998

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=6.1e-24  Score=225.43  Aligned_cols=90  Identities=17%  Similarity=0.187  Sum_probs=63.2

Q ss_pred             ccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCcc------ccCCCC
Q 041908          707 EYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLE------LSELNY  780 (883)
Q Consensus       707 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~------l~~l~~  780 (883)
                      +.++.|++++|.+++..|..+.++++|++|+|++|+|+ .+|.+|+++++|++|+|++|+|+...+..      +..+.+
T Consensus       195 ~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~  273 (305)
T d1xkua_         195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS  273 (305)
T ss_dssp             TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC
T ss_pred             ccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCC
Confidence            34566777777777666777777777888888888777 55777777888888888888877543222      345667


Q ss_pred             CcEEEccCCcCc-ccCCC
Q 041908          781 LAIFNVSYNDLS-GPTPN  797 (883)
Q Consensus       781 L~~l~ls~N~l~-g~ip~  797 (883)
                      |+.+++++|+++ +.+|.
T Consensus       274 L~~L~L~~N~~~~~~~~~  291 (305)
T d1xkua_         274 YSGVSLFSNPVQYWEIQP  291 (305)
T ss_dssp             CSEEECCSSSSCGGGSCG
T ss_pred             CCEEECCCCcCccCcCCH
Confidence            888888888874 45543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=8.5e-24  Score=224.33  Aligned_cols=267  Identities=21%  Similarity=0.240  Sum_probs=169.7

Q ss_pred             CCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECC
Q 041908          423 SLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMS  502 (883)
Q Consensus       423 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~  502 (883)
                      ..+.++-+++.++. +|..+  .+++++|++++|+++...+..|.++++|++|++++|.+....|..|.+++.|++|+++
T Consensus        11 ~~~~~~C~~~~L~~-lP~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCCS-CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCCc-cCCCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            34556666666663 34444  2467777777777775555567777777777777777776666667777777777777


Q ss_pred             CCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccc--cccchhhhcCCCCCEEeccCCcCCc
Q 041908          503 RNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLN--GSIPSALFQSSQLMTLDLRDNEFSG  580 (883)
Q Consensus       503 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~--~~~p~~~~~~~~L~~L~Ls~N~l~~  580 (883)
                      +|+++.. |..  ....++.|++++|.+.+..+..+.....++.++...|...  +..+..+..+++|+.+++++|.++ 
T Consensus        88 ~n~l~~l-~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-  163 (305)
T d1xkua_          88 KNQLKEL-PEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-  163 (305)
T ss_dssp             SSCCSBC-CSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred             CCccCcC-ccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-
Confidence            7777643 322  2345666777777776665555666666666666666432  233445666677777777777766 


Q ss_pred             cCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCccccccccccc
Q 041908          581 NIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEH  660 (883)
Q Consensus       581 ~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (883)
                      .+|..+  +++|+.|++++|..++..+..+..++.++.|++++|.+++..|..+..                        
T Consensus       164 ~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~------------------------  217 (305)
T d1xkua_         164 TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN------------------------  217 (305)
T ss_dssp             SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG------------------------
T ss_pred             ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccc------------------------
Confidence            344332  466777777777777666777777777777777777666544433321                        


Q ss_pred             ccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCC
Q 041908          661 FPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSH  740 (883)
Q Consensus       661 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~  740 (883)
                                                                   +++|++|+|++|+|+ .+|.+|..+++|++|+|++
T Consensus       218 ---------------------------------------------l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~  251 (305)
T d1xkua_         218 ---------------------------------------------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN  251 (305)
T ss_dssp             ---------------------------------------------STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCS
T ss_pred             ---------------------------------------------cccceeeeccccccc-ccccccccccCCCEEECCC
Confidence                                                         355667777777776 5566777777777777777


Q ss_pred             CcCCcCCCcc------ccCcCCCCEEECCCCccc
Q 041908          741 NHLSGSIPRS------FSNLKMIESMDLSYNKLR  768 (883)
Q Consensus       741 N~l~g~ip~~------l~~l~~L~~LdLs~N~Ls  768 (883)
                      |+|+...+..      ...+.+|+.|+|++|+++
T Consensus       252 N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         252 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            7776443222      234566777777777664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.6e-24  Score=227.30  Aligned_cols=210  Identities=22%  Similarity=0.212  Sum_probs=131.7

Q ss_pred             ccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEecc-CCcCCccCCccccCCCCCcEEEcc
Q 041908          520 ARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLR-DNEFSGNIPPLINEDSNLRALLLR  598 (883)
Q Consensus       520 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls-~N~l~~~~p~~l~~l~~L~~L~L~  598 (883)
                      +++|+|++|++++..+.+|.++++|+.|++++|++.+..+..+..++.++.++.. .|.++...|..+.++++|++|+++
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~  113 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD  113 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecC
Confidence            4444444444444333444444455555555555544444444555555555443 334444445556666666666666


Q ss_pred             CCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccC
Q 041908          599 GNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSG  678 (883)
Q Consensus       599 ~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  678 (883)
                      +|.+.+..+..+....+|+.+++++|++++..+..|..                                          
T Consensus       114 ~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~------------------------------------------  151 (284)
T d1ozna_         114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD------------------------------------------  151 (284)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------------------------------------
T ss_pred             CcccccccccccchhcccchhhhccccccccChhHhcc------------------------------------------
Confidence            66665555555666666666666666665433333321                                          


Q ss_pred             CChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCC
Q 041908          679 EDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIE  758 (883)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~  758 (883)
                                                 +++|+.|++++|++++..|..|.++++|+.+++++|++++..|..|+++++|+
T Consensus       152 ---------------------------~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~  204 (284)
T d1ozna_         152 ---------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM  204 (284)
T ss_dssp             ---------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             ---------------------------ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcc
Confidence                                       34566777777777766677777777788888888888777777777778888


Q ss_pred             EEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCCC
Q 041908          759 SMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNT  798 (883)
Q Consensus       759 ~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~  798 (883)
                      +||+++|++++..|..+.++.+|+++++++|++.|.++..
T Consensus       205 ~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~  244 (284)
T d1ozna_         205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR  244 (284)
T ss_dssp             EEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred             cccccccccccccccccccccccCEEEecCCCCCCCccch
Confidence            8888888887777777777777888888888887766543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.5e-23  Score=219.70  Aligned_cols=207  Identities=21%  Similarity=0.205  Sum_probs=147.1

Q ss_pred             CCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEcc-CCccCCCcchhhhCCCCCCEEEC
Q 041908          423 SLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVS-NNMLSGQLPHWVGNFSNLDVLLM  501 (883)
Q Consensus       423 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls-~n~l~~~~p~~~~~l~~L~~L~L  501 (883)
                      ++++|+|++|+++...+..|.++++|++|++++|++....+..+..++.++.++.. .+.+....|..|.++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            34444444444444333445555556666666666665555555556666666554 34455445666777777777777


Q ss_pred             CCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCcc
Q 041908          502 SRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGN  581 (883)
Q Consensus       502 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~  581 (883)
                      ++|.+....+..+...++|+.+++++|.+++..+..|..+++|+.|++++|++++..+..|.++++|+.+++++|++++.
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i  192 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccccc
Confidence            77777666666667777777777777777776666777777788888888888766677778888888888888888888


Q ss_pred             CCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCC
Q 041908          582 IPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGS  629 (883)
Q Consensus       582 ~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~  629 (883)
                      .|..|..+++|++|++++|++.+..|..+..+++|+.|++++|++.+.
T Consensus       193 ~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             ChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            888888888888888888888887778888888888888888887653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.6e-22  Score=205.21  Aligned_cols=201  Identities=21%  Similarity=0.204  Sum_probs=147.1

Q ss_pred             ccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccC
Q 041908          520 ARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRG  599 (883)
Q Consensus       520 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  599 (883)
                      +..++.+++.++. +|..+.  +++++|+|++|++++..+..|.++++|++|+|++|+++. +| .++.+++|++|+|++
T Consensus        12 ~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          12 HLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSH   86 (266)
T ss_dssp             CCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCS
T ss_pred             CeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccccc
Confidence            3444555555443 333321  356666666666664444566667777777777777763 33 345677777777777


Q ss_pred             CcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCC
Q 041908          600 NNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGE  679 (883)
Q Consensus       600 N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  679 (883)
                      |++++ ++..+..+++|+.|++++|.+.+..+..+.                                            
T Consensus        87 N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--------------------------------------------  121 (266)
T d1p9ag_          87 NQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALR--------------------------------------------  121 (266)
T ss_dssp             SCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTT--------------------------------------------
T ss_pred             ccccc-cccccccccccccccccccccceeeccccc--------------------------------------------
Confidence            77763 466677788888888888877643332221                                            


Q ss_pred             ChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCE
Q 041908          680 DNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIES  759 (883)
Q Consensus       680 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~  759 (883)
                                               .+.+++.|++++|.+++..+..+..++.|+.|++++|++++..|..|+.+++|++
T Consensus       122 -------------------------~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~  176 (266)
T d1p9ag_         122 -------------------------GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT  176 (266)
T ss_dssp             -------------------------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCE
T ss_pred             -------------------------cccccccccccccccceeccccccccccchhcccccccccccCccccccccccce
Confidence                                     1456788999999999777777888999999999999999888888999999999


Q ss_pred             EECCCCcccccCCccccCCCCCcEEEccCCcCcccCC
Q 041908          760 MDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTP  796 (883)
Q Consensus       760 LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip  796 (883)
                      |||++|+|+ .+|.++..+++|+.|+|++|++.|.+-
T Consensus       177 L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         177 LLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             EECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             eecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            999999999 789888899999999999999988653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.7e-21  Score=201.62  Aligned_cols=201  Identities=23%  Similarity=0.190  Sum_probs=151.6

Q ss_pred             CCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEe
Q 041908          493 FSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLD  572 (883)
Q Consensus       493 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~  572 (883)
                      ...+.+++.+++.++. +|..+.  +++++|+|++|++++..+..|..+++|++|+|++|+++ .+| .+..+++|++|+
T Consensus         9 ~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~   83 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLD   83 (266)
T ss_dssp             STTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEE
T ss_pred             cCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-cccccccccccc
Confidence            3444455555555553 344332  35666666666666655566666777777777777776 344 245677888888


Q ss_pred             ccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCccc
Q 041908          573 LRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVF  652 (883)
Q Consensus       573 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~  652 (883)
                      |++|++++ .+..+..+++|++|++++|++.+..+..+..+.+++.|++++|.++...+..+..                
T Consensus        84 Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~----------------  146 (266)
T d1p9ag_          84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP----------------  146 (266)
T ss_dssp             CCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT----------------
T ss_pred             cccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccc----------------
Confidence            88888874 4667788888888888888888777778888889999999999887544433221                


Q ss_pred             ccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCccccccccc
Q 041908          653 GYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQE  732 (883)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~  732 (883)
                                                                           ++.++.+++++|+|++..|..|+.+++
T Consensus       147 -----------------------------------------------------l~~l~~l~l~~N~l~~~~~~~~~~l~~  173 (266)
T d1p9ag_         147 -----------------------------------------------------TPKLEKLSLANNNLTELPAGLLNGLEN  173 (266)
T ss_dssp             -----------------------------------------------------CTTCCEEECTTSCCSCCCTTTTTTCTT
T ss_pred             -----------------------------------------------------cccchhcccccccccccCccccccccc
Confidence                                                                 457888999999999888888999999


Q ss_pred             CCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccc
Q 041908          733 LHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRG  769 (883)
Q Consensus       733 L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg  769 (883)
                      |++|+|++|+|+ .+|+.+..+++|+.|+|++|.+..
T Consensus       174 L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            999999999999 889999999999999999999864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=8.9e-17  Score=173.16  Aligned_cols=313  Identities=27%  Similarity=0.307  Sum_probs=179.0

Q ss_pred             CCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccc
Q 041908           89 QLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKC  168 (883)
Q Consensus        89 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~  168 (883)
                      ++++|||++++++. +|+.   .++|++|+|++|+++.  +|. .   +.+|+.|++++|.++.                
T Consensus        39 ~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~~--lp~-~---~~~L~~L~l~~n~l~~----------------   92 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE--LPE-L---PQSLKSLLVDNNNLKA----------------   92 (353)
T ss_dssp             TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS--CCC-C---CTTCCEEECCSSCCSC----------------
T ss_pred             CCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCcc--ccc-c---hhhhhhhhhhhcccch----------------
Confidence            58899999999875 5643   5689999999999985  773 3   4678999999998742                


Q ss_pred             cchhhhhcCC-CCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChH
Q 041908          169 REMNARICEL-KNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLS  247 (883)
Q Consensus       169 ~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~  247 (883)
                            +..+ +.|++|++++|.+. .+|. ++++++|++|++++|.+. ..|    .....+..+.+..+.....   .
T Consensus        93 ------l~~lp~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~-~~~----~~~~~l~~l~~~~~~~~~~---~  156 (353)
T d1jl5a_          93 ------LSDLPPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLP----DLPPSLEFIAAGNNQLEEL---P  156 (353)
T ss_dssp             ------CCSCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSSC---C
T ss_pred             ------hhhhccccccccccccccc-cccc-hhhhccceeecccccccc-ccc----cccccccchhhcccccccc---c
Confidence                  2222 46899999999987 4564 678899999999999887 444    2346677888777665422   2


Q ss_pred             hhhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCC
Q 041908          248 VLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKL  327 (883)
Q Consensus       248 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L  327 (883)
                      .+..++.++.++++.+..........   ..+.+...++.+. .++ .+..++.|+.+++++|... .+|.    ...++
T Consensus       157 ~l~~l~~l~~L~l~~n~~~~~~~~~~---~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~-~~~~----~~~~l  226 (353)
T d1jl5a_         157 ELQNLPFLTAIYADNNSLKKLPDLPL---SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPD----LPPSL  226 (353)
T ss_dssp             CCTTCTTCCEEECCSSCCSSCCCCCT---TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCS----CCTTC
T ss_pred             cccccccceecccccccccccccccc---ccccccccccccc-ccc-ccccccccccccccccccc-cccc----ccccc
Confidence            35667778888888776554322111   2334444444433 222 2345666777777766654 3333    33455


Q ss_pred             cEEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCC
Q 041908          328 EFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSN  407 (883)
Q Consensus       328 ~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  407 (883)
                      ..+.+..+.+.....   ..                         +.+...++..+.+.+. +.   -.......++..+
T Consensus       227 ~~~~~~~~~~~~~~~---~~-------------------------~~l~~~~~~~~~~~~l-~~---l~~~~~~~~~~~~  274 (353)
T d1jl5a_         227 EALNVRDNYLTDLPE---LP-------------------------QSLTFLDVSENIFSGL-SE---LPPNLYYLNASSN  274 (353)
T ss_dssp             CEEECCSSCCSCCCC---CC-------------------------TTCCEEECCSSCCSEE-SC---CCTTCCEEECCSS
T ss_pred             ccccccccccccccc---cc-------------------------cccccccccccccccc-cc---ccchhcccccccC
Confidence            555555555443321   12                         2333333333332210 00   0012233334444


Q ss_pred             cccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcc
Q 041908          408 NFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLP  487 (883)
Q Consensus       408 ~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p  487 (883)
                      .+. .++    ..+++|++|++++|+++. +|.   .+++|+.|++++|+++ .+|..   +++|++|++++|+++ .+|
T Consensus       275 ~~~-~~~----~~~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp  340 (353)
T d1jl5a_         275 EIR-SLC----DLPPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFP  340 (353)
T ss_dssp             CCS-EEC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCC
T ss_pred             ccc-ccc----ccCCCCCEEECCCCccCc-ccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCC
Confidence            333 111    123455555555555542 222   2455666666666665 33432   356777777777766 455


Q ss_pred             hhhhCCCCCCEEECC
Q 041908          488 HWVGNFSNLDVLLMS  502 (883)
Q Consensus       488 ~~~~~l~~L~~L~L~  502 (883)
                      ..   ..+|+.|.+.
T Consensus       341 ~~---~~~L~~L~~~  352 (353)
T d1jl5a_         341 DI---PESVEDLRMN  352 (353)
T ss_dssp             CC---CTTCCEEECC
T ss_pred             cc---ccccCeeECc
Confidence            42   2345666553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=5.5e-17  Score=174.80  Aligned_cols=314  Identities=28%  Similarity=0.285  Sum_probs=172.6

Q ss_pred             CCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcC
Q 041908          112 TSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKL  191 (883)
Q Consensus       112 ~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l  191 (883)
                      .++++|||+++.++.  +| +.   .++|++|++++|+++ .+|                 ..   ..+|++|++++|++
T Consensus        38 ~~l~~LdLs~~~L~~--lp-~~---~~~L~~L~Ls~N~l~-~lp-----------------~~---~~~L~~L~l~~n~l   90 (353)
T d1jl5a_          38 RQAHELELNNLGLSS--LP-EL---PPHLESLVASCNSLT-ELP-----------------EL---PQSLKSLLVDNNNL   90 (353)
T ss_dssp             HTCSEEECTTSCCSC--CC-SC---CTTCSEEECCSSCCS-SCC-----------------CC---CTTCCEEECCSSCC
T ss_pred             cCCCEEEeCCCCCCC--CC-CC---CCCCCEEECCCCCCc-ccc-----------------cc---hhhhhhhhhhhccc
Confidence            478999999999976  88 22   578999999999886 344                 32   46899999999988


Q ss_pred             CCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcCCCCcEEEccCcccccCCCC
Q 041908          192 DGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFP  271 (883)
Q Consensus       192 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~~~  271 (883)
                      + .++. +  .+.|++|++++|.+. .+|  .++.+++|++|+++++.+.....     ....+..+.+..+.       
T Consensus        91 ~-~l~~-l--p~~L~~L~L~~n~l~-~lp--~~~~l~~L~~L~l~~~~~~~~~~-----~~~~l~~l~~~~~~-------  151 (353)
T d1jl5a_          91 K-ALSD-L--PPLLEYLGVSNNQLE-KLP--ELQNSSFLKIIDVDNNSLKKLPD-----LPPSLEFIAAGNNQ-------  151 (353)
T ss_dssp             S-CCCS-C--CTTCCEEECCSSCCS-SCC--CCTTCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSC-------
T ss_pred             c-hhhh-h--ccccccccccccccc-ccc--chhhhccceeecccccccccccc-----ccccccchhhcccc-------
Confidence            7 3432 1  146999999999998 788  36789999999999888763221     12334444433322       


Q ss_pred             CCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCCCCcc
Q 041908          272 WLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLL  351 (883)
Q Consensus       272 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~  351 (883)
                                      ..  .+..+..++.++.+++++|... .++.    .....+.+...++.+...+ ....     
T Consensus       152 ----------------~~--~~~~l~~l~~l~~L~l~~n~~~-~~~~----~~~~~~~l~~~~~~~~~~~-~~~~-----  202 (353)
T d1jl5a_         152 ----------------LE--ELPELQNLPFLTAIYADNNSLK-KLPD----LPLSLESIVAGNNILEELP-ELQN-----  202 (353)
T ss_dssp             ----------------CS--SCCCCTTCTTCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSSCC-CCTT-----
T ss_pred             ----------------cc--ccccccccccceeccccccccc-cccc----ccccccccccccccccccc-cccc-----
Confidence                            21  1223445566666777766655 2222    1122333444433333221 1123     


Q ss_pred             EEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccC
Q 041908          352 HLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSH  431 (883)
Q Consensus       352 ~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~  431 (883)
                                          ++.|+.+++++|... .++.   ...++..+.+..+.+. ..+.    ....+...++..
T Consensus       203 --------------------l~~L~~l~l~~n~~~-~~~~---~~~~l~~~~~~~~~~~-~~~~----~~~~l~~~~~~~  253 (353)
T d1jl5a_         203 --------------------LPFLTTIYADNNLLK-TLPD---LPPSLEALNVRDNYLT-DLPE----LPQSLTFLDVSE  253 (353)
T ss_dssp             --------------------CTTCCEEECCSSCCS-SCCS---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCS
T ss_pred             --------------------ccccccccccccccc-cccc---cccccccccccccccc-cccc----cccccccccccc
Confidence                                344444444444433 1221   1223444444444443 1111    123344444444


Q ss_pred             cccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCC
Q 041908          432 NYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVS  511 (883)
Q Consensus       432 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~  511 (883)
                      +.+.+...    -.......++..+.+.+.    ...+++|++|++++|+++ .+|..   +++|+.|++++|+++ .+|
T Consensus       254 ~~~~~l~~----l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~  320 (353)
T d1jl5a_         254 NIFSGLSE----LPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVP  320 (353)
T ss_dssp             SCCSEESC----CCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCC
T ss_pred             cccccccc----ccchhcccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccc
Confidence            33322100    012233445555544422    223466777777777776 45532   456777777777776 344


Q ss_pred             ccccCCCcccEEecCCCcCcCccccccccCCCcCeeec
Q 041908          512 VPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFL  549 (883)
Q Consensus       512 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L  549 (883)
                      ..   +++|+.|++++|+++. +|..   ..+|+.|.+
T Consensus       321 ~~---~~~L~~L~L~~N~L~~-lp~~---~~~L~~L~~  351 (353)
T d1jl5a_         321 EL---PQNLKQLHVEYNPLRE-FPDI---PESVEDLRM  351 (353)
T ss_dssp             CC---CTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred             cc---cCCCCEEECcCCcCCC-CCcc---ccccCeeEC
Confidence            32   3567777777777653 3432   235566554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.7e-20  Score=207.84  Aligned_cols=381  Identities=18%  Similarity=0.147  Sum_probs=194.7

Q ss_pred             ccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCC----CCCccccccCcccEEeccCCcccCccchhHhh----CC
Q 041908          350 LLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEG----SIPPSMGYTVRLLFLDLSSNNFSGELPKQFLT----GC  421 (883)
Q Consensus       350 L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~----~l  421 (883)
                      |++||++++++++..-..+...+++++.|+|++|.++.    .+...+..+++|++|||++|.++..--..+..    ..
T Consensus         4 l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~   83 (460)
T d1z7xw1           4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS   83 (460)
T ss_dssp             EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTT
T ss_pred             CCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCC
Confidence            44555555555443222222235566666666666542    22334455666666666666654211111111    22


Q ss_pred             CCCCEEEccCcccCCc----CcccccCCCCCCeEEccCcccCcccccc----cc-CCCCCCEEEccCCccCCC----cch
Q 041908          422 VSLAFMNVSHNYFGGQ----IFPKYMSMTQLAWLYLNDNQFTGRLEEG----LL-NAPSLHILDVSNNMLSGQ----LPH  488 (883)
Q Consensus       422 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~-~l~~L~~L~ls~n~l~~~----~p~  488 (883)
                      .+|++|++++|+++..    ++..+..+++|++|++++|.+.......    +. ..............+...    ...
T Consensus        84 ~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (460)
T d1z7xw1          84 CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS  163 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccccc
Confidence            3566666666665543    2233445566666666666654321111    11 112233333333332211    011


Q ss_pred             hhhCCCCCCEEECCCCcCCCCCC----ccc-cCCCcccEEecCCCcCcCcc----ccccccCCCcCeeecccCccccc--
Q 041908          489 WVGNFSNLDVLLMSRNSLEGDVS----VPL-SNLQVARILDISENKLYGPL----EFSFNHSSSLWHLFLHNNSLNGS--  557 (883)
Q Consensus       489 ~~~~l~~L~~L~L~~n~l~~~~~----~~l-~~l~~L~~L~Ls~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~--  557 (883)
                      .+.....++.++++++.......    ..+ ........+++..+.+....    ...+.....++.+++++|.+...  
T Consensus       164 ~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~  243 (460)
T d1z7xw1         164 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM  243 (460)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccccc
Confidence            23334566666666655431100    000 11123445566555443221    11223445667777777665422  


Q ss_pred             ---cchhhhcCCCCCEEeccCCcCCcc----CCccccCCCCCcEEEccCCcccccCchhh----c-CCCCCCEEEcCCCc
Q 041908          558 ---IPSALFQSSQLMTLDLRDNEFSGN----IPPLINEDSNLRALLLRGNNLQGNIPQQL----C-HLRKIAIVDISYNL  625 (883)
Q Consensus       558 ---~p~~~~~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~g~~p~~l----~-~l~~L~~L~ls~N~  625 (883)
                         .+........++.+++++|.+...    ....+...+.++.+++++|+++......+    . ....|+.+++++|.
T Consensus       244 ~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~  323 (460)
T d1z7xw1         244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS  323 (460)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             chhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccc
Confidence               122233456677777777766533    12234456677777777777654322222    1 23467777777776


Q ss_pred             CCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccc
Q 041908          626 LDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGV  705 (883)
Q Consensus       626 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  705 (883)
                      ++......+...                                                                 ...
T Consensus       324 l~~~~~~~l~~~-----------------------------------------------------------------~~~  338 (460)
T d1z7xw1         324 FTAACCSHFSSV-----------------------------------------------------------------LAQ  338 (460)
T ss_dssp             CBGGGHHHHHHH-----------------------------------------------------------------HHH
T ss_pred             hhhhhhhhcccc-----------------------------------------------------------------ccc
Confidence            542111101000                                                                 011


Q ss_pred             cccccEEEccCCcCccc----Cccccc-ccccCCeeeCCCCcCCcC----CCccccCcCCCCEEECCCCcccccCCccc-
Q 041908          706 LEYMTGLDLSSNELTGE----IPSAIG-YLQELHALNLSHNHLSGS----IPRSFSNLKMIESMDLSYNKLRGQIPLEL-  775 (883)
Q Consensus       706 l~~L~~LdLs~N~l~g~----ip~~l~-~l~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l-  775 (883)
                      .++|++|||++|++++.    ++..+. ..+.|++|+|++|+|+..    +++.+...++|++|||++|+++......+ 
T Consensus       339 ~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~  418 (460)
T d1z7xw1         339 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV  418 (460)
T ss_dssp             CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHH
T ss_pred             ccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHH
Confidence            35678889988888753    333333 356788899999988753    45556677889999999998875433332 


Q ss_pred             ---c-CCCCCcEEEccCCcCcccC
Q 041908          776 ---S-ELNYLAIFNVSYNDLSGPT  795 (883)
Q Consensus       776 ---~-~l~~L~~l~ls~N~l~g~i  795 (883)
                         . +...|+.+++++|++....
T Consensus       419 ~~l~~~~~~L~~l~l~~~~~~~~~  442 (460)
T d1z7xw1         419 ESVRQPGCLLEQLVLYDIYWSEEM  442 (460)
T ss_dssp             HHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             HHHHhCCCccCEEECCCCCCCHHH
Confidence               2 3346888999888887533

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.5e-17  Score=167.19  Aligned_cols=77  Identities=17%  Similarity=0.274  Sum_probs=56.1

Q ss_pred             cccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEE
Q 041908          706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFN  785 (883)
Q Consensus       706 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~  785 (883)
                      .++|+.|++++|.+++..  .++++++|+.|+|++|++++. | .++++++|++|+|++|++++..  .++++++|+.|+
T Consensus       150 ~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~  223 (227)
T d1h6ua2         150 LTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVT  223 (227)
T ss_dssp             CTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEE
T ss_pred             ccccccccccccccccch--hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEE
Confidence            345677777777776433  277788888888888888753 3 3788888888888888887543  277888888888


Q ss_pred             ccC
Q 041908          786 VSY  788 (883)
Q Consensus       786 ls~  788 (883)
                      +++
T Consensus       224 lsn  226 (227)
T d1h6ua2         224 LTN  226 (227)
T ss_dssp             EEE
T ss_pred             eeC
Confidence            863

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=6.4e-19  Score=197.61  Aligned_cols=206  Identities=17%  Similarity=0.060  Sum_probs=121.0

Q ss_pred             CCCEEEccCcccCCcC----cccccCCCCCCeEEccCcccCc-----cccccccCCCCCCEEEccCCccCCC----cchh
Q 041908          423 SLAFMNVSHNYFGGQI----FPKYMSMTQLAWLYLNDNQFTG-----RLEEGLLNAPSLHILDVSNNMLSGQ----LPHW  489 (883)
Q Consensus       423 ~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~ls~n~l~~~----~p~~  489 (883)
                      ....+++..+.+....    ...+...+.++.+++.+|.+..     ..+........++.+++++|.+...    ....
T Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~  278 (460)
T d1z7xw1         199 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  278 (460)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             cccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccc
Confidence            4445555555443221    1122344566666666665432     1223334456677777777766532    2233


Q ss_pred             hhCCCCCCEEECCCCcCCCCCCccc-----cCCCcccEEecCCCcCcCcccc----ccccCCCcCeeecccCccccc---
Q 041908          490 VGNFSNLDVLLMSRNSLEGDVSVPL-----SNLQVARILDISENKLYGPLEF----SFNHSSSLWHLFLHNNSLNGS---  557 (883)
Q Consensus       490 ~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~~~----~~~~~~~L~~L~L~~n~l~~~---  557 (883)
                      +...+.++.+++++|.++......+     .....|+.+++++|.++.....    .+...++|++|+|++|++++.   
T Consensus       279 l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~  358 (460)
T d1z7xw1         279 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR  358 (460)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred             ccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccc
Confidence            4556777777777777653221111     2335677788887777654322    234456788888888887643   


Q ss_pred             -cchhhh-cCCCCCEEeccCCcCCcc----CCccccCCCCCcEEEccCCcccccCchhh----c-CCCCCCEEEcCCCcC
Q 041908          558 -IPSALF-QSSQLMTLDLRDNEFSGN----IPPLINEDSNLRALLLRGNNLQGNIPQQL----C-HLRKIAIVDISYNLL  626 (883)
Q Consensus       558 -~p~~~~-~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~g~~p~~l----~-~l~~L~~L~ls~N~l  626 (883)
                       ++..+. ..+.|++|+|++|.+++.    ++..+..+++|++|+|++|+++......+    . +...|+.|++.+|.+
T Consensus       359 ~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~  438 (460)
T d1z7xw1         359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW  438 (460)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             hhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCC
Confidence             233333 356788888888888743    34456667888888888888875433333    2 334688888888877


Q ss_pred             CC
Q 041908          627 DG  628 (883)
Q Consensus       627 ~~  628 (883)
                      ..
T Consensus       439 ~~  440 (460)
T d1z7xw1         439 SE  440 (460)
T ss_dssp             CH
T ss_pred             CH
Confidence            53

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.2e-16  Score=160.39  Aligned_cols=205  Identities=17%  Similarity=0.224  Sum_probs=115.1

Q ss_pred             CcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEcc
Q 041908          375 LVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLN  454 (883)
Q Consensus       375 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  454 (883)
                      +..++++.+++++.+  .+..+.+|+.|++.+|.++ .++.  +..+++|++|++++|.+++                  
T Consensus        21 ~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~~--l~~l~~L~~L~ls~n~i~~------------------   77 (227)
T d1h6ua2          21 AIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITD------------------   77 (227)
T ss_dssp             HHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCC------------------
T ss_pred             HHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cchh--HhcCCCCcEeecCCceeec------------------
Confidence            334455556555432  3445566666666666665 3432  2345555555555554443                  


Q ss_pred             CcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCcc
Q 041908          455 DNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPL  534 (883)
Q Consensus       455 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  534 (883)
                            ..|  +..+++|+++++++|.++. ++ .+.++++|++++++++...+..  .+...+.++.+.++++.+....
T Consensus        78 ------~~~--l~~l~~l~~l~~~~n~~~~-i~-~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~  145 (227)
T d1h6ua2          78 ------LAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS  145 (227)
T ss_dssp             ------CGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCG
T ss_pred             ------ccc--ccccccccccccccccccc-cc-cccccccccccccccccccccc--hhccccchhhhhchhhhhchhh
Confidence                  322  4445555555555555542 22 2455555555555555544322  2444555666666666554433


Q ss_pred             ccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCC
Q 041908          535 EFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLR  614 (883)
Q Consensus       535 ~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~  614 (883)
                      +  +..+++|+.|++++|.+++.  ..+.++++|++|++++|++++ ++ .++.+++|++|++++|++++ ++. +.+++
T Consensus       146 ~--~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~-i~~-l~~l~  217 (227)
T d1h6ua2         146 P--LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISD-VSP-LANTS  217 (227)
T ss_dssp             G--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCB-CGG-GTTCT
T ss_pred             h--hccccccccccccccccccc--hhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCC-Ccc-cccCC
Confidence            2  44555666777776666532  236667777777777777764 33 36677777777777777774 332 66777


Q ss_pred             CCCEEEcC
Q 041908          615 KIAIVDIS  622 (883)
Q Consensus       615 ~L~~L~ls  622 (883)
                      +|+.|+++
T Consensus       218 ~L~~L~ls  225 (227)
T d1h6ua2         218 NLFIVTLT  225 (227)
T ss_dssp             TCCEEEEE
T ss_pred             CCCEEEee
Confidence            77777775

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=4.6e-17  Score=165.44  Aligned_cols=80  Identities=16%  Similarity=0.029  Sum_probs=56.6

Q ss_pred             cccEEEccCCcCcccCcccccccccCC-eeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEc
Q 041908          708 YMTGLDLSSNELTGEIPSAIGYLQELH-ALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNV  786 (883)
Q Consensus       708 ~L~~LdLs~N~l~g~ip~~l~~l~~L~-~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~l  786 (883)
                      .++.|++++|+++...+..+ ....++ .+++++|+++...+..|.++++|++|||++|+++...+..|.++++|+++++
T Consensus       154 ~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             SCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            45678888888884444433 444444 4467888888655566888899999999999988655566788777777766


Q ss_pred             cC
Q 041908          787 SY  788 (883)
Q Consensus       787 s~  788 (883)
                      .+
T Consensus       233 ~~  234 (242)
T d1xwdc1         233 YN  234 (242)
T ss_dssp             ES
T ss_pred             CC
Confidence            54

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=1.6e-17  Score=161.96  Aligned_cols=61  Identities=28%  Similarity=0.404  Sum_probs=29.3

Q ss_pred             cccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCccc
Q 041908          708 YMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLR  768 (883)
Q Consensus       708 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Ls  768 (883)
                      .|+.|||++|+|++..|..|.++++|++|+|++|+|++..|+.|..+++|++|+|++|.+.
T Consensus        79 ~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            3444444444444444444444444555555555554444444444455555555555444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.5e-16  Score=157.31  Aligned_cols=180  Identities=19%  Similarity=0.297  Sum_probs=126.3

Q ss_pred             ecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCccc
Q 041908          524 DISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQ  603 (883)
Q Consensus       524 ~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  603 (883)
                      +++.+.+.+.++.  ..+.+|++|++++|.++. ++ .+..+++|++|++++|++++. + .++.+++|++|++++|+++
T Consensus        30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~  103 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVK  103 (210)
T ss_dssp             HTTCSCTTSEECH--HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred             HhCcCccCCccCH--HHhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccc
Confidence            4455555544432  234567777777777763 22 366778888888888888753 3 3567788888888888887


Q ss_pred             ccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhh
Q 041908          604 GNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRE  683 (883)
Q Consensus       604 g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  683 (883)
                      + +| .++.+++|+.|++++|.+.. ++ .+                                                 
T Consensus       104 ~-l~-~l~~l~~L~~L~l~~~~~~~-~~-~l-------------------------------------------------  130 (210)
T d1h6ta2         104 D-LS-SLKDLKKLKSLSLEHNGISD-IN-GL-------------------------------------------------  130 (210)
T ss_dssp             C-GG-GGTTCTTCCEEECTTSCCCC-CG-GG-------------------------------------------------
T ss_pred             c-cc-cccccccccccccccccccc-cc-cc-------------------------------------------------
Confidence            4 44 47778888888888887642 11 01                                                 


Q ss_pred             hcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECC
Q 041908          684 LRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLS  763 (883)
Q Consensus       684 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs  763 (883)
                                          ..++.++.+++++|.+++.  ..+..+++|+.+++++|++++. + .++++++|+.|||+
T Consensus       131 --------------------~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls  186 (210)
T d1h6ta2         131 --------------------VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLS  186 (210)
T ss_dssp             --------------------GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECC
T ss_pred             --------------------ccccccccccccccccccc--cccccccccccccccccccccc-c-cccCCCCCCEEECC
Confidence                                1145677888888888742  3467788899999999988864 3 28888999999999


Q ss_pred             CCcccccCCccccCCCCCcEEEccC
Q 041908          764 YNKLRGQIPLELSELNYLAIFNVSY  788 (883)
Q Consensus       764 ~N~Lsg~ip~~l~~l~~L~~l~ls~  788 (883)
                      +|+++. +| .++++++|++|++++
T Consensus       187 ~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         187 KNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             SSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             CCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            998874 55 588888999998874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=4.6e-17  Score=158.68  Aligned_cols=174  Identities=20%  Similarity=0.221  Sum_probs=92.9

Q ss_pred             CeeecccCccccccchhhhcCCCCCEEeccCCcCCccC-CccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCC
Q 041908          545 WHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNI-PPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISY  623 (883)
Q Consensus       545 ~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~  623 (883)
                      +.++.++++++ .+|..+.  +++++|+|++|+|++.+ +..|..+++|+.|++++|++.+..+..+..+++|+.|++++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            45566666665 4554432  45666666666665433 34455566666666666666655555666666666666666


Q ss_pred             CcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccc
Q 041908          624 NLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKG  703 (883)
Q Consensus       624 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  703 (883)
                      |++++..|..|.+                                                                   
T Consensus        88 N~l~~l~~~~F~~-------------------------------------------------------------------  100 (192)
T d1w8aa_          88 NKIKEISNKMFLG-------------------------------------------------------------------  100 (192)
T ss_dssp             CCCCEECSSSSTT-------------------------------------------------------------------
T ss_pred             ccccccCHHHHhC-------------------------------------------------------------------
Confidence            6665443333321                                                                   


Q ss_pred             cccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcE
Q 041908          704 GVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAI  783 (883)
Q Consensus       704 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~  783 (883)
                        +++|++|+|++|+|++..|..|..+++|++|+|++|.+....+.. .-...++.+++..|.++...|..+   ..++.
T Consensus       101 --l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~p~~l---~~~~l  174 (192)
T d1w8aa_         101 --LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSKV---RDVQI  174 (192)
T ss_dssp             --CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSSTTT---TTSBG
T ss_pred             --CCcccccccCCccccccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCCCeEeCCChhh---cCCEe
Confidence              345556666666666555555666666666666666665432211 111224444555555555555433   23444


Q ss_pred             EEccCCcCccc
Q 041908          784 FNVSYNDLSGP  794 (883)
Q Consensus       784 l~ls~N~l~g~  794 (883)
                      ++++.|+|.|.
T Consensus       175 ~~L~~n~l~C~  185 (192)
T d1w8aa_         175 KDLPHSEFKCS  185 (192)
T ss_dssp             GGSCTTTCCCC
T ss_pred             eecCHhhCcCC
Confidence            55555555543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=6.5e-16  Score=151.28  Aligned_cols=177  Identities=21%  Similarity=0.345  Sum_probs=117.5

Q ss_pred             EecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcc
Q 041908          523 LDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNL  602 (883)
Q Consensus       523 L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l  602 (883)
                      ..++.+.+++.++  ...+.++++|++++|.++. + +.+..+++|++|++++|++++..|  ++++++|++|++++|.+
T Consensus        23 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          23 TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI   96 (199)
T ss_dssp             HHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HHhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccc
Confidence            3455555554432  2345566777777777663 3 246677777777887777775432  67777788888887777


Q ss_pred             cccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChh
Q 041908          603 QGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNR  682 (883)
Q Consensus       603 ~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  682 (883)
                      .. ++ .+.+++.|+.+++++|......+  +                                                
T Consensus        97 ~~-~~-~l~~l~~L~~L~l~~~~~~~~~~--~------------------------------------------------  124 (199)
T d2omxa2          97 AD-IT-PLANLTNLTGLTLFNNQITDIDP--L------------------------------------------------  124 (199)
T ss_dssp             CC-CG-GGTTCTTCSEEECCSSCCCCCGG--G------------------------------------------------
T ss_pred             cc-cc-ccccccccccccccccccccccc--c------------------------------------------------
Confidence            63 33 36777788888887776643111  0                                                


Q ss_pred             hhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEEC
Q 041908          683 ELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDL  762 (883)
Q Consensus       683 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdL  762 (883)
                                           ..+++|+.|++++|++. .+| .+..+++|+.|++++|++++..  .++++++|++||+
T Consensus       125 ---------------------~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~l  179 (199)
T d2omxa2         125 ---------------------KNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDI  179 (199)
T ss_dssp             ---------------------TTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEEC
T ss_pred             ---------------------chhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccCCc--cccCCCCCCEEEC
Confidence                                 11456778888888886 344 4777888888888888888543  3788888888888


Q ss_pred             CCCcccccCCccccCCCCCcEE
Q 041908          763 SYNKLRGQIPLELSELNYLAIF  784 (883)
Q Consensus       763 s~N~Lsg~ip~~l~~l~~L~~l  784 (883)
                      ++|++++ +| .++++++|+.|
T Consensus       180 s~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         180 SSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CSSCCCC-CG-GGGGCTTCSEE
T ss_pred             CCCCCCC-Cc-cccCCCCCCcC
Confidence            8888875 43 46777777764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.9e-16  Score=159.46  Aligned_cols=217  Identities=17%  Similarity=0.141  Sum_probs=95.5

Q ss_pred             EEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcC-cccccCCCCCCeEEccC
Q 041908          377 YLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQI-FPKYMSMTQLAWLYLND  455 (883)
Q Consensus       377 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~  455 (883)
                      .++.++..++ .+|..+.  +++++|++++|+++ .+|...|.++++|++|++++|.+...+ +..|..++.++++.+..
T Consensus        12 ~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          12 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             EEEEESCSCS-SCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             EEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            4444444444 4443331  34555555555554 444444445555555555555444322 22344445555554432


Q ss_pred             -cccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCcc
Q 041908          456 -NQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPL  534 (883)
Q Consensus       456 -n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  534 (883)
                       |++....+..|.++++|+++++++|.+....+  +.                     .+..++.+..+..+++.+....
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~--~~---------------------~~~~l~~l~~~~~~n~~l~~i~  144 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD--VH---------------------KIHSLQKVLLDIQDNINIHTIE  144 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCC--CT---------------------TTCBSSCEEEEEESCTTCCEEC
T ss_pred             cccccccccccccccccccccccchhhhccccc--cc---------------------cccccccccccccccccccccc
Confidence             34444444444555555555555555442211  11                     1122333333333444433333


Q ss_pred             ccccccC-CCcCeeecccCccccccchhhhcCCCCCEE-eccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcC
Q 041908          535 EFSFNHS-SSLWHLFLHNNSLNGSIPSALFQSSQLMTL-DLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCH  612 (883)
Q Consensus       535 ~~~~~~~-~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L-~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~  612 (883)
                      +..|..+ ..++.|++++|+++ .++......++++.+ ++++|+++...+..|.++++|++|++++|+++...+..+.+
T Consensus       145 ~~~~~~~~~~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~  223 (242)
T d1xwdc1         145 RNSFVGLSFESVILWLNKNGIQ-EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN  223 (242)
T ss_dssp             TTSSTTSBSSCEEEECCSSCCC-EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTT
T ss_pred             ccccccccccceeeeccccccc-ccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcC
Confidence            3333332 24455555555555 233333333443333 34455555333334555566666666666665332333444


Q ss_pred             CCCCCEEEc
Q 041908          613 LRKIAIVDI  621 (883)
Q Consensus       613 l~~L~~L~l  621 (883)
                      +++|+.+++
T Consensus       224 l~~L~~l~~  232 (242)
T d1xwdc1         224 LKKLRARST  232 (242)
T ss_dssp             CCEEESSSE
T ss_pred             CcccccCcC
Confidence            444444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.1e-15  Score=151.09  Aligned_cols=164  Identities=29%  Similarity=0.366  Sum_probs=85.3

Q ss_pred             CCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCc
Q 041908          111 LTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNK  190 (883)
Q Consensus       111 l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~  190 (883)
                      +.+|++|++++|.+..  ++  .+..+++|++|++++|++++.                   ..++.+++|++|++++|+
T Consensus        45 L~~L~~L~l~~~~i~~--l~--~l~~l~~L~~L~L~~n~i~~l-------------------~~~~~l~~L~~L~l~~n~  101 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS--VQ--GIQYLPNVTKLFLNGNKLTDI-------------------KPLANLKNLGWLFLDENK  101 (210)
T ss_dssp             HHTCCEEECTTSCCCC--CT--TGGGCTTCCEEECCSSCCCCC-------------------GGGTTCTTCCEEECCSSC
T ss_pred             hcCccEEECcCCCCCC--ch--hHhhCCCCCEEeCCCccccCc-------------------cccccCcccccccccccc
Confidence            3455555666655544  32  355556666666666655432                   124455666666666666


Q ss_pred             CCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcCCCCcEEEccCcccccCCC
Q 041908          191 LDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENF  270 (883)
Q Consensus       191 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~~  270 (883)
                      +++ +| .+.++++|+.|++++|.+. .++  .+..+++++.+++++|.+++.   ..+..+++|+++++++        
T Consensus       102 i~~-l~-~l~~l~~L~~L~l~~~~~~-~~~--~l~~l~~l~~l~~~~n~l~~~---~~~~~l~~L~~l~l~~--------  165 (210)
T d1h6ta2         102 VKD-LS-SLKDLKKLKSLSLEHNGIS-DIN--GLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLED--------  165 (210)
T ss_dssp             CCC-GG-GGTTCTTCCEEECTTSCCC-CCG--GGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCS--------
T ss_pred             ccc-cc-ccccccccccccccccccc-ccc--ccccccccccccccccccccc---cccccccccccccccc--------
Confidence            553 33 3555666666666666554 333  455566666666666655421   1233444444444333        


Q ss_pred             CCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcc
Q 041908          271 PWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLF  333 (883)
Q Consensus       271 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~  333 (883)
                                     |++++. + .+..+++|++|++++|+++ .+|.  +.++++|++|+|+
T Consensus       166 ---------------n~l~~i-~-~l~~l~~L~~L~Ls~N~i~-~l~~--l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         166 ---------------NQISDI-V-PLAGLTKLQNLYLSKNHIS-DLRA--LAGLKNLDVLELF  208 (210)
T ss_dssp             ---------------SCCCCC-G-GGTTCTTCCEEECCSSCCC-BCGG--GTTCTTCSEEEEE
T ss_pred             ---------------cccccc-c-cccCCCCCCEEECCCCCCC-CChh--hcCCCCCCEEEcc
Confidence                           333321 1 2455566666666666665 3442  2356666666664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=2.6e-15  Score=146.89  Aligned_cols=142  Identities=23%  Similarity=0.312  Sum_probs=75.3

Q ss_pred             ccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcC
Q 041908          466 LLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLW  545 (883)
Q Consensus       466 ~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~  545 (883)
                      +..+++|++|++++|++++..|  ++++++|++|++++|.+... + .+.++++|+.|++++|......  .+..+++|+
T Consensus        58 l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~  131 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTLFNNQITDID--PLKNLTNLN  131 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCS
T ss_pred             cccCCCcCcCccccccccCccc--ccCCcccccccccccccccc-c-cccccccccccccccccccccc--ccchhhhhH
Confidence            3344555555555555543222  45555555555555554432 1 2445555555555555544322  244555666


Q ss_pred             eeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEE
Q 041908          546 HLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIV  619 (883)
Q Consensus       546 ~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L  619 (883)
                      .|++++|++.. ++ .+..+++|+.|++++|++++. + .++++++|++|++++|++++ ++ .++.+++|+.|
T Consensus       132 ~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         132 RLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             EEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             Hhhhhhhhhcc-cc-cccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            66666666542 22 455666666666666666643 2 35666666666666666653 33 35566666554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.5e-15  Score=157.58  Aligned_cols=257  Identities=19%  Similarity=0.164  Sum_probs=134.6

Q ss_pred             EEEccCCCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCC
Q 041908          304 YIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQN  383 (883)
Q Consensus       304 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n  383 (883)
                      .+|++++.+.......+..  .....+.++...............+|++|+++++.+.+.....+...+++|++|++++|
T Consensus         4 ~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~   81 (284)
T d2astb2           4 TLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL   81 (284)
T ss_dssp             EEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred             EEECCCCCCCchHHHHHHh--ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccccc
Confidence            5566665554222222221  12344444444433322222345567777777777665554445555788888888888


Q ss_pred             cCCCCCCccccccCcccEEeccCC-cccCccchhHhhCCCCCCEEEccCcc-cCCcC-cccccCCCCCCeEEccCcccCc
Q 041908          384 SFEGSIPPSMGYTVRLLFLDLSSN-NFSGELPKQFLTGCVSLAFMNVSHNY-FGGQI-FPKYMSMTQLAWLYLNDNQFTG  460 (883)
Q Consensus       384 ~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~ip~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n~l~~  460 (883)
                      .+++..+..++.+++|++|++++| .++..--..+..++++|++|+++++. ++... ...+.                 
T Consensus        82 ~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~-----------------  144 (284)
T d2astb2          82 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA-----------------  144 (284)
T ss_dssp             BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH-----------------
T ss_pred             CCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhc-----------------
Confidence            777666667777788888888775 34322112233456666666666642 22111 01111                 


Q ss_pred             cccccccCCCCCCEEEccCCc--cCC-CcchhhhCCCCCCEEECCCC-cCCCCCCccccCCCcccEEecCCC-cCcCccc
Q 041908          461 RLEEGLLNAPSLHILDVSNNM--LSG-QLPHWVGNFSNLDVLLMSRN-SLEGDVSVPLSNLQVARILDISEN-KLYGPLE  535 (883)
Q Consensus       461 ~~~~~~~~l~~L~~L~ls~n~--l~~-~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~  535 (883)
                            ...+.|+.|+++++.  ++. .+.....++++|++|++++| .+++.....+.++++|++|++++| .+++...
T Consensus       145 ------~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l  218 (284)
T d2astb2         145 ------HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL  218 (284)
T ss_dssp             ------HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG
T ss_pred             ------ccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHH
Confidence                  112345555554431  221 12222344555666666554 344444455556666666666664 4544444


Q ss_pred             cccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccC
Q 041908          536 FSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINE  588 (883)
Q Consensus       536 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~  588 (883)
                      ..+..+++|+.|+++++.-.+.++.....+++|+   +..+++++..++.+++
T Consensus       219 ~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         219 LELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGN  268 (284)
T ss_dssp             GGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSS
T ss_pred             HHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCCCCCCccCc
Confidence            4556666777777776622223333334556554   4666777666555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.5e-15  Score=155.89  Aligned_cols=256  Identities=16%  Similarity=0.164  Sum_probs=140.1

Q ss_pred             EEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccC
Q 041908          352 HLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSH  431 (883)
Q Consensus       352 ~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~  431 (883)
                      .+|++++.+.......+..  .....+.++...+.... .......+|++||++++.+.+.....++..+++|++|++++
T Consensus         4 ~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           4 TLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             EEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             EEECCCCCCCchHHHHHHh--ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            5677766654333333322  23556666655544222 23334567888888888776554455566677777777777


Q ss_pred             cccCCcCcccccCCCCCCeEEccCc-ccCcc-ccccccCCCCCCEEEccCCc-cCCC-cchhhhCCCCCCEEECCCCcCC
Q 041908          432 NYFGGQIFPKYMSMTQLAWLYLNDN-QFTGR-LEEGLLNAPSLHILDVSNNM-LSGQ-LPHWVGNFSNLDVLLMSRNSLE  507 (883)
Q Consensus       432 n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~ls~n~-l~~~-~p~~~~~l~~L~~L~L~~n~l~  507 (883)
                      +.+++..+..+..+++|++|++++| .++.. +......+++|++|++++|. ++.. +...+..               
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~---------------  145 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH---------------  145 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH---------------
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcc---------------
Confidence            7666555555555666666666654 23311 11112334555555555542 2211 1111211               


Q ss_pred             CCCCccccCCCcccEEecCCC--cCcCc-cccccccCCCcCeeecccC-ccccccchhhhcCCCCCEEeccCC-cCCccC
Q 041908          508 GDVSVPLSNLQVARILDISEN--KLYGP-LEFSFNHSSSLWHLFLHNN-SLNGSIPSALFQSSQLMTLDLRDN-EFSGNI  582 (883)
Q Consensus       508 ~~~~~~l~~l~~L~~L~Ls~n--~l~~~-~~~~~~~~~~L~~L~L~~n-~l~~~~p~~~~~~~~L~~L~Ls~N-~l~~~~  582 (883)
                              .+++|+.|+++++  .++.. +......+++|++|++++| .+++.....+.++++|++|++++| .+++..
T Consensus       146 --------~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~  217 (284)
T d2astb2         146 --------VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET  217 (284)
T ss_dssp             --------SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred             --------cccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHH
Confidence                    1234445555443  12211 1122245667777777765 356566666777778888888774 566665


Q ss_pred             CccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCccccc
Q 041908          583 PPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTN  636 (883)
Q Consensus       583 p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~  636 (883)
                      ...++++++|+.|+++++--.+.++.....+++|+   +..++++...+..+++
T Consensus       218 l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         218 LLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGN  268 (284)
T ss_dssp             GGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSS
T ss_pred             HHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCCCCCCccCc
Confidence            56677778888888887722222333334466654   5667777766665544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=1.8e-14  Score=154.29  Aligned_cols=85  Identities=15%  Similarity=0.158  Sum_probs=40.5

Q ss_pred             CCcCeeecccCccccc----cchhhhcCCCCCEEeccCCcCCcc-----CCccccCCCCCcEEEccCCccccc----Cch
Q 041908          542 SSLWHLFLHNNSLNGS----IPSALFQSSQLMTLDLRDNEFSGN-----IPPLINEDSNLRALLLRGNNLQGN----IPQ  608 (883)
Q Consensus       542 ~~L~~L~L~~n~l~~~----~p~~~~~~~~L~~L~Ls~N~l~~~-----~p~~l~~l~~L~~L~L~~N~l~g~----~p~  608 (883)
                      +.|+.+.+++|.++..    +...+..++.|+.|++++|+++..     +...+..+++|+.|++++|+++..    +..
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~  237 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  237 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc
Confidence            3455555555554422    222344455566666666555421     122344455555555555555422    223


Q ss_pred             hhcCCCCCCEEEcCCCcC
Q 041908          609 QLCHLRKIAIVDISYNLL  626 (883)
Q Consensus       609 ~l~~l~~L~~L~ls~N~l  626 (883)
                      .+..+++|+.|++++|.+
T Consensus       238 ~l~~~~~L~~L~Ls~n~i  255 (344)
T d2ca6a1         238 ALKSWPNLRELGLNDCLL  255 (344)
T ss_dssp             HGGGCTTCCEEECTTCCC
T ss_pred             cccccccchhhhhhcCcc
Confidence            344455555555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8.9e-14  Score=130.22  Aligned_cols=83  Identities=28%  Similarity=0.230  Sum_probs=38.1

Q ss_pred             hcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccCh-hhhcCCCCCCEEeccCCcCccccC---hHhhh
Q 041908          175 ICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPI-SVFANLTSLEYLSLSGNNFQGSFS---LSVLA  250 (883)
Q Consensus       175 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~-~~~~~l~~L~~L~L~~n~l~g~~~---~~~l~  250 (883)
                      +..+++|++|++++|+++...+..+..+++|++|++++|+++ .++. ..+..+++|++|++++|.++. .+   ...+.
T Consensus        59 ~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~  136 (162)
T d1a9na_          59 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIY  136 (162)
T ss_dssp             CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHH
T ss_pred             cccCcchhhhhcccccccCCCccccccccccccceecccccc-ccccccccccccccchhhcCCCcccc-ccchHHHHHH
Confidence            344455555555555554333333344555555555555554 3331 234455555555555555442 22   12344


Q ss_pred             cCCCCcEEE
Q 041908          251 NHSRLEVLQ  259 (883)
Q Consensus       251 ~l~~L~~L~  259 (883)
                      .+++|+.||
T Consensus       137 ~lp~L~~LD  145 (162)
T d1a9na_         137 KVPQVRVLD  145 (162)
T ss_dssp             HCTTCSEET
T ss_pred             HCCCcCeeC
Confidence            555555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=3.4e-13  Score=119.86  Aligned_cols=119  Identities=26%  Similarity=0.268  Sum_probs=62.8

Q ss_pred             CEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcCCCC
Q 041908          115 TSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGS  194 (883)
Q Consensus       115 ~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~  194 (883)
                      |+|+|++|+++.  ++  .++++++|++||+++|.+.. +|                 ..++.+++|++|++++|.+++ 
T Consensus         1 R~L~Ls~n~l~~--l~--~l~~l~~L~~L~ls~N~l~~-lp-----------------~~~~~l~~L~~L~l~~N~i~~-   57 (124)
T d1dcea3           1 RVLHLAHKDLTV--LC--HLEQLLLVTHLDLSHNRLRA-LP-----------------PALAALRCLEVLQASDNALEN-   57 (124)
T ss_dssp             SEEECTTSCCSS--CC--CGGGGTTCCEEECCSSCCCC-CC-----------------GGGGGCTTCCEEECCSSCCCC-
T ss_pred             CEEEcCCCCCCC--Cc--ccccCCCCCEEECCCCccCc-ch-----------------hhhhhhhcccccccccccccc-
Confidence            345555555543  33  35555555555555555532 22                 445556666666666666653 


Q ss_pred             CCccccCCCCCCEEEccCCccccccCh-hhhcCCCCCCEEeccCCcCccc--cChHhhhcCCCCcEE
Q 041908          195 LPQCLSNLTYLRVLDLTSNQLSGNLPI-SVFANLTSLEYLSLSGNNFQGS--FSLSVLANHSRLEVL  258 (883)
Q Consensus       195 ~p~~l~~l~~L~~L~Ls~n~l~~~ip~-~~~~~l~~L~~L~L~~n~l~g~--~~~~~l~~l~~L~~L  258 (883)
                      +| .++++++|++|++++|+++ .+|. ..++.+++|++|++++|+++..  ++......+++|+.+
T Consensus        58 l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          58 VD-GVANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CG-GGTTCSSCCEEECCSSCCC-SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cC-ccccccccCeEECCCCccC-CCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            33 3566666666666666665 3331 3455666666666666665421  223344455555544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.44  E-value=3.8e-14  Score=151.63  Aligned_cols=246  Identities=18%  Similarity=0.206  Sum_probs=126.2

Q ss_pred             CCCCcEEeCCCCcCCCC----CCccccccCcccEEeccCCcccC---ccchh------HhhCCCCCCEEEccCcccCCcC
Q 041908          372 LPELVYLDMSQNSFEGS----IPPSMGYTVRLLFLDLSSNNFSG---ELPKQ------FLTGCVSLAFMNVSHNYFGGQI  438 (883)
Q Consensus       372 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~---~ip~~------~~~~l~~L~~L~Ls~n~l~~~~  438 (883)
                      ...+++|+|++|.+...    +...+...++|+.++++++....   ..+..      .+..+++|+.|++++|.++...
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            56777777777766432    22334556677777777654321   11111      1223455555555555554431


Q ss_pred             c----ccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCC----C
Q 041908          439 F----PKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGD----V  510 (883)
Q Consensus       439 ~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~----~  510 (883)
                      .    ..+...++|++|++++|.+.......+..  .+..         -.........+.|+.+.+++|+++..    +
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~---------~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l  178 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQE---------LAVNKKAKNAPPLRSIICGRNRLENGSMKEW  178 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHHH---------HHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred             ccchhhhhcccccchheecccccccccccccccc--cccc---------cccccccccCcccceeecccccccccccccc
Confidence            1    12223344455555444432110000000  0000         00000012344555666665555422    1


Q ss_pred             CccccCCCcccEEecCCCcCcCc-----cccccccCCCcCeeecccCccccc----cchhhhcCCCCCEEeccCCcCCcc
Q 041908          511 SVPLSNLQVARILDISENKLYGP-----LEFSFNHSSSLWHLFLHNNSLNGS----IPSALFQSSQLMTLDLRDNEFSGN  581 (883)
Q Consensus       511 ~~~l~~l~~L~~L~Ls~n~l~~~-----~~~~~~~~~~L~~L~L~~n~l~~~----~p~~~~~~~~L~~L~Ls~N~l~~~  581 (883)
                      ...+..++.|+.|++++|.+...     +...+..+++|+.|++++|.++..    +...+..+++|++|+|++|.+++.
T Consensus       179 ~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~  258 (344)
T d2ca6a1         179 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR  258 (344)
T ss_dssp             HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             cchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCch
Confidence            12233455666666666665432     223345566777777777776533    334556777888888888877754


Q ss_pred             CCcc----cc--CCCCCcEEEccCCccccc----Cchhhc-CCCCCCEEEcCCCcCCC
Q 041908          582 IPPL----IN--EDSNLRALLLRGNNLQGN----IPQQLC-HLRKIAIVDISYNLLDG  628 (883)
Q Consensus       582 ~p~~----l~--~l~~L~~L~L~~N~l~g~----~p~~l~-~l~~L~~L~ls~N~l~~  628 (883)
                      ....    +.  ..+.|++|++++|+++..    +...+. +++.|++|++++|.+..
T Consensus       259 g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         259 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            2222    22  235688888888887643    233343 57788999999988853

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.4e-13  Score=128.87  Aligned_cols=131  Identities=19%  Similarity=0.136  Sum_probs=108.5

Q ss_pred             CCcCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccch
Q 041908           83 NNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLE  162 (883)
Q Consensus        83 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~  162 (883)
                      .+.+...+++|||++|+|... +..+..+++|++|+|++|.++.  ++  .+..+++|++|++++|++....+       
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~--l~--~~~~l~~L~~L~ls~N~i~~l~~-------   80 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK--LD--GFPLLRRLKTLLVNNNRICRIGE-------   80 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE--EC--CCCCCSSCCEEECCSSCCCEECS-------
T ss_pred             hccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCc--cC--CcccCcchhhhhcccccccCCCc-------
Confidence            445667899999999999874 6667889999999999999986  65  68999999999999999865433       


Q ss_pred             hhcccccchhhhhcCCCCCCEEEccCCcCCCCCC-ccccCCCCCCEEEccCCccccccCh---hhhcCCCCCCEEecc
Q 041908          163 LLNNKCREMNARICELKNLVELNLSWNKLDGSLP-QCLSNLTYLRVLDLTSNQLSGNLPI---SVFANLTSLEYLSLS  236 (883)
Q Consensus       163 ~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~ip~---~~~~~l~~L~~L~L~  236 (883)
                                ..+..+++|++|++++|+++.... ..+..+++|++|++++|.++ ..|.   ..+..+++|++||-.
T Consensus        81 ----------~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          81 ----------GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             ----------CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTE
T ss_pred             ----------cccccccccccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeCCC
Confidence                      345679999999999999985322 46889999999999999998 6662   358889999999843

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=6.6e-13  Score=117.94  Aligned_cols=104  Identities=32%  Similarity=0.406  Sum_probs=85.8

Q ss_pred             CEEECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccC
Q 041908          141 EVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLP  220 (883)
Q Consensus       141 ~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip  220 (883)
                      |+|||++|+++..                   ..+..+++|++|++++|+++ .+|+.++.+++|++|++++|.++ .+|
T Consensus         1 R~L~Ls~n~l~~l-------------------~~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~   59 (124)
T d1dcea3           1 RVLHLAHKDLTVL-------------------CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD   59 (124)
T ss_dssp             SEEECTTSCCSSC-------------------CCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG
T ss_pred             CEEEcCCCCCCCC-------------------cccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC
Confidence            6899999988633                   34778899999999999998 57888999999999999999998 677


Q ss_pred             hhhhcCCCCCCEEeccCCcCccccChHhhhcCCCCcEEEccCccccc
Q 041908          221 ISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET  267 (883)
Q Consensus       221 ~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~  267 (883)
                        .++++++|++|++++|+++..-....+..+++|++|++++|++..
T Consensus        60 --~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          60 --GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             --GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             --ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence              589999999999999999843333567888888888888877654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.21  E-value=5.2e-13  Score=129.56  Aligned_cols=77  Identities=21%  Similarity=0.270  Sum_probs=53.6

Q ss_pred             ccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCC-ccccCcCCCCEEECCCCcccccCCcc----------c
Q 041908          707 EYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIP-RSFSNLKMIESMDLSYNKLRGQIPLE----------L  775 (883)
Q Consensus       707 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip-~~l~~l~~L~~LdLs~N~Lsg~ip~~----------l  775 (883)
                      +.|+.|++++|+++. ++ .+..+++|++|+|++|+++.... ..++.+++|+.|+|++|+++...+..          +
T Consensus        93 ~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi  170 (198)
T d1m9la_          93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             HHCCEEECSEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHH
T ss_pred             ccccccccccccccc-cc-cccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHH
Confidence            356777777777773 33 46778888888888888874322 45778888888888888887654432          4


Q ss_pred             cCCCCCcEEE
Q 041908          776 SELNYLAIFN  785 (883)
Q Consensus       776 ~~l~~L~~l~  785 (883)
                      ..+++|+.||
T Consensus       171 ~~lp~L~~LD  180 (198)
T d1m9la_         171 KRLPNLKKLD  180 (198)
T ss_dssp             HHCSSCCEES
T ss_pred             HHCCCcCEeC
Confidence            5667777766

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.9e-11  Score=111.09  Aligned_cols=89  Identities=21%  Similarity=0.171  Sum_probs=75.8

Q ss_pred             cccccEEEccCC-cCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEE
Q 041908          706 LEYMTGLDLSSN-ELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIF  784 (883)
Q Consensus       706 l~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l  784 (883)
                      ++++++|++++| .|+...+..|.++++|+.|+|++|+|+...|..|..+++|++|||++|+|+...+..+.. ..|+.|
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L  108 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQEL  108 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEE
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-cccccc
Confidence            467888999766 488666778999999999999999999888999999999999999999999554455544 479999


Q ss_pred             EccCCcCcccC
Q 041908          785 NVSYNDLSGPT  795 (883)
Q Consensus       785 ~ls~N~l~g~i  795 (883)
                      +|++|++.+.+
T Consensus       109 ~L~~Np~~C~C  119 (156)
T d2ifga3         109 VLSGNPLHCSC  119 (156)
T ss_dssp             ECCSSCCCCCG
T ss_pred             ccCCCcccCCc
Confidence            99999998755

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.17  E-value=8.9e-13  Score=127.86  Aligned_cols=131  Identities=21%  Similarity=0.283  Sum_probs=87.0

Q ss_pred             CcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhc
Q 041908          485 QLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQ  564 (883)
Q Consensus       485 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~  564 (883)
                      .+|..+..+++|++|++++|+++. ++ .+..+++|+.|++++|.++. ++..+..+++|+.|++++|+++. + +.+..
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~  113 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-L-SGIEK  113 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCC-H-HHHHH
T ss_pred             hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-ccccccccccccccccccccccc-c-ccccc
Confidence            345556666677777777776663 22 36666677777777776653 33333445567788888887763 3 34677


Q ss_pred             CCCCCEEeccCCcCCccCC-ccccCCCCCcEEEccCCcccccCch----------hhcCCCCCCEEE
Q 041908          565 SSQLMTLDLRDNEFSGNIP-PLINEDSNLRALLLRGNNLQGNIPQ----------QLCHLRKIAIVD  620 (883)
Q Consensus       565 ~~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~g~~p~----------~l~~l~~L~~L~  620 (883)
                      +++|+.|++++|+++.... ..+..+++|+.|++++|++....+.          .+..+++|+.||
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            7788888888888874321 4577788888888888887654332          256788998887

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.2e-10  Score=107.81  Aligned_cols=108  Identities=19%  Similarity=0.192  Sum_probs=91.7

Q ss_pred             cccEEEccCCcCcccCcccccccccCCeeeCCCC-cCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEc
Q 041908          708 YMTGLDLSSNELTGEIPSAIGYLQELHALNLSHN-HLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNV  786 (883)
Q Consensus       708 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~l  786 (883)
                      ..+.++++++++. .+|..+..+++|+.|++++| .++...+..|.++++|+.|+|++|+|++..|.+|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3466999999998 78888999999999999876 598777788999999999999999999988999999999999999


Q ss_pred             cCCcCcccCCCC-ccCCCCCCcccCCCcCCCC
Q 041908          787 SYNDLSGPTPNT-KQFANFDESNYRGNLNLCG  817 (883)
Q Consensus       787 s~N~l~g~ip~~-~~~~~~~~~~~~gn~~lc~  817 (883)
                      ++|+|+. +|.+ .+...+......|||.-|.
T Consensus        88 s~N~l~~-l~~~~~~~~~l~~L~L~~Np~~C~  118 (156)
T d2ifga3          88 SFNALES-LSWKTVQGLSLQELVLSGNPLHCS  118 (156)
T ss_dssp             CSSCCSC-CCSTTTCSCCCCEEECCSSCCCCC
T ss_pred             cCCCCcc-cChhhhccccccccccCCCcccCC
Confidence            9999995 5543 3333445556789998875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.7e-07  Score=86.57  Aligned_cols=86  Identities=24%  Similarity=0.240  Sum_probs=66.4

Q ss_pred             hhhcCCCCCCEEEccCCcCCCCC--CccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccCh----
Q 041908          173 ARICELKNLVELNLSWNKLDGSL--PQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSL----  246 (883)
Q Consensus       173 ~~l~~l~~L~~L~Ls~n~l~~~~--p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~----  246 (883)
                      .....+++|++|+|++|+++..-  +..+..+++|++|++++|.++ .++.-.+....+|+.|++++|.+......    
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            34457899999999999998642  455778999999999999999 67644445566899999999999754331    


Q ss_pred             --HhhhcCCCCcEEE
Q 041908          247 --SVLANHSRLEVLQ  259 (883)
Q Consensus       247 --~~l~~l~~L~~L~  259 (883)
                        ..+..+++|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence              3466788888775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.4e-07  Score=87.15  Aligned_cols=70  Identities=27%  Similarity=0.200  Sum_probs=34.4

Q ss_pred             chhhhCCCCCCEEECCCCcCCCCC--CccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCcccc
Q 041908          487 PHWVGNFSNLDVLLMSRNSLEGDV--SVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNG  556 (883)
Q Consensus       487 p~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  556 (883)
                      +..+..+++|++|++++|+++..-  +..+..+++|+.|++++|.++...+..+.....|++|++++|.+..
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            333445666666666666665432  2234445555555555555544333222222345555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.56  E-value=3.7e-05  Score=70.74  Aligned_cols=87  Identities=13%  Similarity=0.112  Sum_probs=49.6

Q ss_pred             ccCCCcCeeecccCccccc----cchhhhcCCCCCEEeccCCcCCccC----CccccCCCCCcEEEccCCcccc------
Q 041908          539 NHSSSLWHLFLHNNSLNGS----IPSALFQSSQLMTLDLRDNEFSGNI----PPLINEDSNLRALLLRGNNLQG------  604 (883)
Q Consensus       539 ~~~~~L~~L~L~~n~l~~~----~p~~~~~~~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~L~~N~l~g------  604 (883)
                      ...+.|++|+|++|.+...    +...+...+.|+.|+|++|.+++..    -..+...++|++|++++|.+..      
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~  120 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE  120 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred             hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHH
Confidence            3344555555555555421    2234445566777777777666431    2234556677777777765442      


Q ss_pred             -cCchhhcCCCCCCEEEcCCCc
Q 041908          605 -NIPQQLCHLRKIAIVDISYNL  625 (883)
Q Consensus       605 -~~p~~l~~l~~L~~L~ls~N~  625 (883)
                       .+...+...++|+.|+++.+.
T Consensus       121 ~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         121 MDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHhCCCccEeeCcCCC
Confidence             134455667888888886653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.39  E-value=6.8e-05  Score=68.90  Aligned_cols=11  Identities=9%  Similarity=-0.019  Sum_probs=4.8

Q ss_pred             CCCCcEEEccC
Q 041908          589 DSNLRALLLRG  599 (883)
Q Consensus       589 l~~L~~L~L~~  599 (883)
                      .++|+.|+++.
T Consensus       130 n~sL~~l~l~~  140 (167)
T d1pgva_         130 NESLLRVGISF  140 (167)
T ss_dssp             CSSCCEEECCC
T ss_pred             CCCccEeeCcC
Confidence            34444444443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.64  E-value=0.00024  Score=65.07  Aligned_cols=16  Identities=0%  Similarity=-0.047  Sum_probs=7.4

Q ss_pred             CCCCCCEEECCCCcCC
Q 041908          492 NFSNLDVLLMSRNSLE  507 (883)
Q Consensus       492 ~l~~L~~L~L~~n~l~  507 (883)
                      ..+.|++|++++|.++
T Consensus        44 ~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             TCCSCCEEECTTSCCC
T ss_pred             cCCccCeeeccCCccc
Confidence            3444444444444443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.64  E-value=0.00052  Score=62.65  Aligned_cols=86  Identities=14%  Similarity=0.212  Sum_probs=47.9

Q ss_pred             cCCCcCeeecccCccccc----cchhhhcCCCCCEEeccCCcCCcc----CCccccCCCCCcEEEc--cCCcccc----c
Q 041908          540 HSSSLWHLFLHNNSLNGS----IPSALFQSSQLMTLDLRDNEFSGN----IPPLINEDSNLRALLL--RGNNLQG----N  605 (883)
Q Consensus       540 ~~~~L~~L~L~~n~l~~~----~p~~~~~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L--~~N~l~g----~  605 (883)
                      ..++|++|++++|.++..    +-..+...+.++.+++++|.++..    +...+...++|+.++|  ++|++..    .
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~  123 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  123 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence            344555555555555432    222344556677777777666533    2234555667776554  3555543    2


Q ss_pred             CchhhcCCCCCCEEEcCCCc
Q 041908          606 IPQQLCHLRKIAIVDISYNL  625 (883)
Q Consensus       606 ~p~~l~~l~~L~~L~ls~N~  625 (883)
                      +...+...+.|+.|+++.+.
T Consensus       124 La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCCCcCEEeCcCCC
Confidence            44455667888888877654