Citrus Sinensis ID: 041924

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60------
Protein Sequence
MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFAVDEQKEDRNGTGDDKV
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLwgkkkdrfavdeqkedrngtgddkv
Flexible Loop (DISEMBL)
MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKkdrfavdeqkedrngtgddkv
Low Complexity Region (SEG)
MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFAVDEQKEDRNGTGDDKV
Disordered region (IsUnstruct)
****LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDR******************
Disordered Region (DISOPRED)
MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWG***********************
Disordered Region (DISEMBL)
MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFAV***************
Disordered Region (DISPRO)
MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKK*********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFAVDEQKEDRNGTGDDKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	66	2.2.26 [Sep-21-2011]
Q9LPF1	370	WAT1-related protein At1g	yes	no	0.696	0.124	0.565	5e-10
Q501F8	373	WAT1-related protein At4g	no	no	0.818	0.144	0.5	7e-10
Q9FL41	402	WAT1-related protein At5g	no	no	0.696	0.114	0.586	1e-09
Q9ZUS1	380	WAT1-related protein At2g	no	no	0.984	0.171	0.432	4e-09
Q9FNA5	377	WAT1-related protein At5g	no	no	0.712	0.124	0.489	7e-09
F4HZQ7	389	WAT1-related protein At1g	no	no	0.833	0.141	0.454	7e-09
O80638	374	WAT1-related protein At2g	no	no	0.696	0.122	0.565	7e-09
Q9M0B8	373	WAT1-related protein At4g	no	no	0.863	0.152	0.438	2e-08
Q9SUD5	359	WAT1-related protein At4g	no	no	0.712	0.130	0.531	3e-08
Q4PT23	355	WAT1-related protein At1g	no	no	0.727	0.135	0.541	4e-08

>sp|Q9LPF1|WTR8_ARATH WAT1-related protein At1g44800 OS=Arabidopsis thaliana GN=At1g44800 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 35/46 (76%)

Query: 2   FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKD 47
           FSP+ ++I A   A+  AE++HLGS+IGA  IV+GLY V+WGK KD
Sbjct: 283 FSPMCMIITAFLGALVLAEKIHLGSIIGAVFIVLGLYSVVWGKSKD 328

Arabidopsis thaliana (taxid: 3702)

>sp|Q501F8|WTR32_ARATH WAT1-related protein At4g08300 OS=Arabidopsis thaliana GN=At4g08300 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 36/54 (66%)

Query: 2   FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFAVDEQK 55
           FSP+ ++I A    +  AE++HLGS+IGA  IV GLY V+WGK KD     E+K
Sbjct: 286 FSPMCMIITAFLGVLVLAEKIHLGSIIGAIFIVFGLYSVVWGKAKDEVISVEEK 339

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query: 2   FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKD 47
           FSPL +VIVA+  +   AE++ LG +IGA LIV+GLY VLWGK+K+
Sbjct: 298 FSPLMMVIVAVMGSFVLAEKIFLGGVIGAVLIVIGLYAVLWGKQKE 343

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUS1|WTR13_ARATH WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 9/74 (12%)

Query: 2   FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKD-----RFAVDEQ-- 54
           FSPL ++IVA+ S I FAE+++LG ++GA +I  GLY V+WGK KD        +D++  
Sbjct: 286 FSPLCMIIVAIMSTIIFAEQMYLGRVLGAVVICAGLYLVIWGKGKDYKYNSTLQLDDESA 345

Query: 55  --KEDRNGTGDDKV 66
             K + +G G D V
Sbjct: 346 QPKLELSGNGKDNV 359

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNA5|WTR39_ARATH WAT1-related protein At5g13670 OS=Arabidopsis thaliana GN=At5g13670 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 37/47 (78%)

Query: 2   FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDR 48
           F+PL +V+VA+ S   F E++++G +IG+ +IV+G+Y VLWGK KD+
Sbjct: 283 FNPLSMVLVAILSTFVFLEKVYVGRVIGSVVIVIGIYLVLWGKSKDK 329

Arabidopsis thaliana (taxid: 3702)

>sp|F4HZQ7|WTR5_ARATH WAT1-related protein At1g21890 OS=Arabidopsis thaliana GN=At1g21890 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 37/55 (67%)

Query: 2   FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFAVDEQKE 56
           F+PL +VI A    +  +E +HLGS+IG   I+VGLY V+WGK KD+   D+ ++
Sbjct: 292 FNPLCVVITAALGVVVLSESIHLGSVIGTLFIIVGLYTVVWGKGKDKRMTDDDED 346

Arabidopsis thaliana (taxid: 3702)

>sp|O80638|WTR14_ARATH WAT1-related protein At2g39510 OS=Arabidopsis thaliana GN=At2g39510 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 35/46 (76%)

Query: 2   FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKD 47
           F+PL +VIVA+  +I  AE + LG ++GA +IV+GLY VLWGK KD
Sbjct: 281 FNPLSMVIVAILGSIILAEVMFLGRILGAIVIVLGLYSVLWGKSKD 326

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0B8|WTR37_ARATH WAT1-related protein At4g30420 OS=Arabidopsis thaliana GN=At4g30420 PE=3 SV=1

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 39/57 (68%)

Query: 1   MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFAVDEQKED 57
           +F+PL  VIV + +A+ F E ++ GSLIG   +++GLY VLWGK KD     +Q+++
Sbjct: 273 LFNPLCTVIVTILAALFFHEEIYTGSLIGGLGVILGLYTVLWGKAKDVMMNQDQRDN 329

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUD5|WTR36_ARATH WAT1-related protein At4g28040 OS=Arabidopsis thaliana GN=At4g28040 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 34/47 (72%)

Query: 1   MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKD 47
           +F+PL  VIV  F A+   E+ +LGSL+GA  I++GLY VLWGK +D
Sbjct: 270 LFNPLSAVIVTFFGALYLKEQTYLGSLLGALAIILGLYIVLWGKSED 316

Arabidopsis thaliana (taxid: 3702)

>sp|Q4PT23|WTR6_ARATH WAT1-related protein At1g25270 OS=Arabidopsis thaliana GN=At1g25270 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/48 (54%), Positives = 37/48 (77%)

Query: 1   MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDR 48
           +FSP++LVIVAL  + A  E LHLGS+IGA ++V G+Y V+W K K++
Sbjct: 276 VFSPIRLVIVALIGSFALEEPLHLGSIIGAMIMVGGVYLVVWCKMKEK 323

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
224117720	366	predicted protein [Populus trichocarpa]	0.878	0.158	0.724	2e-15
255555847	372	Auxin-induced protein 5NG4, putative [Ri	0.954	0.169	0.603	2e-15
224117712	254	predicted protein [Populus trichocarpa]	0.878	0.228	0.724	2e-15
297742487	366	unnamed protein product [Vitis vinifera]	0.984	0.177	0.621	6e-15
359473995	357	PREDICTED: auxin-induced protein 5NG4-li	0.984	0.182	0.621	8e-15
297742489	365	unnamed protein product [Vitis vinifera]	0.984	0.178	0.590	7e-13
359474183	356	PREDICTED: auxin-induced protein 5NG4-li	0.984	0.182	0.590	9e-13
449521655	347	PREDICTED: auxin-induced protein 5NG4-li	0.727	0.138	0.604	1e-09
356499546	361	PREDICTED: auxin-induced protein 5NG4-li	0.712	0.130	0.659	2e-09
449449968	374	PREDICTED: auxin-induced protein 5NG4-li	0.727	0.128	0.583	3e-09

>gi|224117720|ref|XP_002317651.1| predicted protein [Populus trichocarpa] gi|222860716|gb|EEE98263.1| predicted protein [Populus trichocarpa]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/58 (72%), Positives = 46/58 (79%)

Query: 1   MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFAVDEQKEDR 58
           MFSPL +VIV LFSA AFAERLHLGSLIG  LIVVGLYCVLWGK++D  A  +  E R
Sbjct: 283 MFSPLLVVIVGLFSAFAFAERLHLGSLIGTGLIVVGLYCVLWGKRQDNSAAQKPDEGR 340

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555847|ref|XP_002518959.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223541946|gb|EEF43492.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/63 (60%), Positives = 49/63 (77%)

Query: 1   MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFAVDEQKEDRNG 60
           MFSPL L+IV +FSAIAFAERLH+GSL GA LI++GLYCVLWGK+++    +  +E +  
Sbjct: 282 MFSPLLLIIVGIFSAIAFAERLHVGSLTGAVLIILGLYCVLWGKRQEDSTAESPEEGKGS 341

Query: 61  TGD 63
            GD
Sbjct: 342 VGD 344

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117712|ref|XP_002317649.1| predicted protein [Populus trichocarpa] gi|222860714|gb|EEE98261.1| predicted protein [Populus trichocarpa]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/58 (72%), Positives = 46/58 (79%)

Query: 1   MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFAVDEQKEDR 58
           MFSPL +VIV LFSA AFAERLHLGSLIG  LIVVGLYCVLWGK++D  A  +  E R
Sbjct: 171 MFSPLLVVIVGLFSAFAFAERLHLGSLIGTGLIVVGLYCVLWGKRQDNSAAQKPDEGR 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742487|emb|CBI34636.3| unnamed protein product [Vitis vinifera]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/66 (62%), Positives = 50/66 (75%), Gaps = 1/66 (1%)

Query: 1   MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFAVDEQKEDRNG 60
           MF+PLQ++ V +FSA+AFAERLHLGSLIGAFLI+ GLY VLWGK+ D  + +   E   G
Sbjct: 283 MFTPLQVITVGIFSAVAFAERLHLGSLIGAFLIIAGLYIVLWGKRTDGRS-EGTSESEKG 341

Query: 61  TGDDKV 66
             DDKV
Sbjct: 342 LHDDKV 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473995|ref|XP_002271326.2| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 41/66 (62%), Positives = 50/66 (75%), Gaps = 1/66 (1%)

Query: 1   MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFAVDEQKEDRNG 60
           MF+PLQ++ V +FSA+AFAERLHLGSLIGAFLI+ GLY VLWGK+ D  + +   E   G
Sbjct: 274 MFTPLQVITVGIFSAVAFAERLHLGSLIGAFLIIAGLYIVLWGKRTDGRS-EGTSESEKG 332

Query: 61  TGDDKV 66
             DDKV
Sbjct: 333 LHDDKV 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742489|emb|CBI34638.3| unnamed protein product [Vitis vinifera]

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/66 (59%), Positives = 48/66 (72%), Gaps = 1/66 (1%)

Query: 1   MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFAVDEQKEDRNG 60
           MF+PL ++ V +FSA+AFAERLHL SLIGAFLI+ GLY VLWGK+ D  +    K  + G
Sbjct: 282 MFTPLLVIFVGIFSAVAFAERLHLSSLIGAFLIIAGLYIVLWGKRTDGRSEGISKS-KKG 340

Query: 61  TGDDKV 66
             DDKV
Sbjct: 341 LDDDKV 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474183|ref|XP_002273800.2| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 39/66 (59%), Positives = 48/66 (72%), Gaps = 1/66 (1%)

Query: 1   MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFAVDEQKEDRNG 60
           MF+PL ++ V +FSA+AFAERLHL SLIGAFLI+ GLY VLWGK+ D  +    K  + G
Sbjct: 273 MFTPLLVIFVGIFSAVAFAERLHLSSLIGAFLIIAGLYIVLWGKRTDGRSEGISKS-KKG 331

Query: 61  TGDDKV 66
             DDKV
Sbjct: 332 LDDDKV 337

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449521655|ref|XP_004167845.1| PREDICTED: auxin-induced protein 5NG4-like [Cucumis sativus]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/48 (60%), Positives = 38/48 (79%)

Query: 2   FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRF 49
           F+PL +VIVA+ S+  FAE L LG +IGA +I++GLY VLWGK KD+F
Sbjct: 261 FNPLSMVIVAIISSFIFAETLRLGRVIGAAVIIIGLYLVLWGKSKDKF 308

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499546|ref|XP_003518600.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/47 (65%), Positives = 37/47 (78%)

Query: 1   MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKD 47
           MF+PL LVI A+FSAI + E L+LGS+ G  L+VVGLY VLWGK KD
Sbjct: 291 MFTPLALVITAIFSAILWKETLYLGSVAGTILLVVGLYSVLWGKSKD 337

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449968|ref|XP_004142736.1| PREDICTED: auxin-induced protein 5NG4-like [Cucumis sativus]

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/48 (58%), Positives = 38/48 (79%)

Query: 2   FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRF 49
           F+PL +VIVA+ S+  FAE L LG ++GA +I++GLY VLWGK KD+F
Sbjct: 287 FNPLSMVIVAIISSFIFAETLRLGRVVGAAVIIIGLYLVLWGKSKDKF 334

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
TAIR|locus:2194864	370	SIAR1 "Siliques Are Red 1" [Ar	0.803	0.143	0.518	4.7e-10
TAIR|locus:2132457	373	UMAMIT17 "Usually multiple aci	0.818	0.144	0.5	1e-09
TAIR|locus:2169414	402	UMAMIT9 "Usually multiple acid	0.696	0.114	0.586	1.2e-09
TAIR|locus:2176065	359	UMAMIT21 "AT5G64700" [Arabidop	0.848	0.155	0.454	1.2e-09
TAIR|locus:2201148	389	UMAMIT19 "Usually multiple aci	0.878	0.149	0.474	2.3e-09
TAIR|locus:2049847	380	UMAMIT12 "Usually multiple aci	0.984	0.171	0.432	2.9e-09
TAIR|locus:2012255	374	UMAMIT25 "Usually multiple aci	0.833	0.147	0.482	4.6e-09
TAIR|locus:2173189	377	UMAMIT15 "Usually multiple aci	0.712	0.124	0.489	4.7e-09
TAIR|locus:2039792	374	UMAMIT14 "AT2G39510" [Arabidop	0.696	0.122	0.565	7.6e-09
TAIR|locus:2132982	359	UMAMIT33 "Usually multiple aci	0.924	0.169	0.444	9e-09

TAIR|locus:2194864 SIAR1 "Siliques Are Red 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 4.7e-10, P = 4.7e-10
 Identities = 28/54 (51%), Positives = 39/54 (72%)

Query:     2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRF-AVDEQ 54
             FSP+ ++I A   A+  AE++HLGS+IGA  IV+GLY V+WGK KD    +DE+
Sbjct:   283 FSPMCMIITAFLGALVLAEKIHLGSIIGAVFIVLGLYSVVWGKSKDEVNPLDEK 336

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0006865 "amino acid transport" evidence=IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IDA

GO:0032973 "amino acid export" evidence=IDA

GO:0034639 "L-amino acid efflux transmembrane transporter activity" evidence=IDA

GO:0043090 "amino acid import" evidence=IDA

GO:0080144 "amino acid homeostasis" evidence=IMP

TAIR|locus:2132457 UMAMIT17 "Usually multiple acids move in and out Transporters 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 27/54 (50%), Positives = 36/54 (66%)

Query:     2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFAVDEQK 55
             FSP+ ++I A    +  AE++HLGS+IGA  IV GLY V+WGK KD     E+K
Sbjct:   286 FSPMCMIITAFLGVLVLAEKIHLGSIIGAIFIVFGLYSVVWGKAKDEVISVEEK 339

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2169414 UMAMIT9 "Usually multiple acids move in and out Transporters 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query:     2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKD 47
             FSPL +VIVA+  +   AE++ LG +IGA LIV+GLY VLWGK+K+
Sbjct:   298 FSPLMMVIVAVMGSFVLAEKIFLGGVIGAVLIVIGLYAVLWGKQKE 343

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2176065 UMAMIT21 "AT5G64700" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 30/66 (45%), Positives = 43/66 (65%)

Query:     1 MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFAVDEQKEDRNG 60
             MF+PL L+   L SAI   E + LGS++G  L+++GLYCVLWGK +         E++N 
Sbjct:   286 MFTPLSLLFTLLSSAILLCEIISLGSIVGGLLLIIGLYCVLWGKSR---------EEKN- 335

Query:    61 TGDDKV 66
             +GDDK+
Sbjct:   336 SGDDKI 341

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2201148 UMAMIT19 "Usually multiple acids move in and out Transporters 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 28/59 (47%), Positives = 38/59 (64%)

Query:     2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFAVDEQKEDRNG 60
             F+PL +VI A    +  +E +HLGS+IG   I+VGLY V+WGK KD+   D+  ED  G
Sbjct:   292 FNPLCVVITAALGVVVLSESIHLGSVIGTLFIIVGLYTVVWGKGKDKRMTDDD-EDCKG 349

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2049847 UMAMIT12 "Usually multiple acids move in and out Transporters 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 32/74 (43%), Positives = 47/74 (63%)

Query:     2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKD-----RFAVDEQ-- 54
             FSPL ++IVA+ S I FAE+++LG ++GA +I  GLY V+WGK KD        +D++  
Sbjct:   286 FSPLCMIIVAIMSTIIFAEQMYLGRVLGAVVICAGLYLVIWGKGKDYKYNSTLQLDDESA 345

Query:    55 --KEDRNGTGDDKV 66
               K + +G G D V
Sbjct:   346 QPKLELSGNGKDNV 359

GO:0005737 "cytoplasm" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2012255 UMAMIT25 "Usually multiple acids move in and out Transporters 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 4.6e-09, P = 4.6e-09
 Identities = 28/58 (48%), Positives = 43/58 (74%)

Query:     1 MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFAVDEQKEDR 58
             +FSPL LV+VA+FS     E+L+ G+ +G+ L+V+GLY VLWGK ++   V E++E+R
Sbjct:   283 VFSPLLLVVVAIFSWALLEEKLYTGTFMGSALVVIGLYGVLWGKDRE---VSEKEEER 337

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173189 UMAMIT15 "Usually multiple acids move in and out Transporters 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 23/47 (48%), Positives = 37/47 (78%)

Query:     2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDR 48
             F+PL +V+VA+ S   F E++++G +IG+ +IV+G+Y VLWGK KD+
Sbjct:   283 FNPLSMVLVAILSTFVFLEKVYVGRVIGSVVIVIGIYLVLWGKSKDK 329

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2039792 UMAMIT14 "AT2G39510" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 26/46 (56%), Positives = 35/46 (76%)

Query:     2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKD 47
             F+PL +VIVA+  +I  AE + LG ++GA +IV+GLY VLWGK KD
Sbjct:   281 FNPLSMVIVAILGSIILAEVMFLGRILGAIVIVLGLYSVLWGKSKD 326

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2132982 UMAMIT33 "Usually multiple acids move in and out Transporters 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 9.0e-09, P = 9.0e-09
 Identities = 28/63 (44%), Positives = 41/63 (65%)

Query:     1 MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKD--RFAVDEQKEDR 58
             +F+PL  VIV  F A+   E+ +LGSL+GA  I++GLY VLWGK +D    + D + E+ 
Sbjct:   270 LFNPLSAVIVTFFGALYLKEQTYLGSLLGALAIILGLYIVLWGKSEDYQEESTDLKLENE 329

Query:    59 NGT 61
             + T
Sbjct:   330 HNT 332

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00111246 annotation not avaliable (254 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	66
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	9e-09
pfam00892	126	pfam00892, EamA, EamA-like transporter family	0.002

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score = 49.2 bits (117), Expect = 9e-09
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 1   MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGK---KKDRFAVDEQKE 56
           +F PL ++I  +  AI   + L+LG LIG  LI +G Y V+WGK   +KD+      KE
Sbjct: 287 IFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQLLSFSGKE 345

Length = 358

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 33.4 bits (77), Expect = 0.002
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 1   MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLW 42
           + + L  V   + S +   E+L L  L+G  LI++G+  +L 
Sbjct: 85  VITSLSPVFTLILSVLLLGEKLTLKQLLGIVLILLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	66
PLN00411	358	nodulin MtN21 family protein; Provisional	99.22
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.54
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.52
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.51
PRK11689	295	aromatic amino acid exporter; Provisional	98.43
PRK11272	292	putative DMT superfamily transporter inner membran	98.28
COG2510	140	Predicted membrane protein [Function unknown]	98.24
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.19
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.18
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.11
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.09
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.07
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	97.99
PRK15430	296	putative chloramphenical resistance permease RarD;	97.86
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.68
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.61
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.61
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.58
COG0697	292	RhaT Permeases of the drug/metabolite transporter	97.58
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.44
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.29
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.27
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.27
COG2076	106	EmrE Membrane transporters of cations and cationic	97.26
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.22
PRK11431	105	multidrug efflux system protein; Provisional	97.21
PRK15430	296	putative chloramphenical resistance permease RarD;	97.15
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	97.14
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.02
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	97.01
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	96.94
PRK11689	295	aromatic amino acid exporter; Provisional	96.94
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	96.94
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	96.83
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	96.73
PRK11272	292	putative DMT superfamily transporter inner membran	96.56
COG0697	292	RhaT Permeases of the drug/metabolite transporter	96.56
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	96.56
PLN00411	358	nodulin MtN21 family protein; Provisional	96.46
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	96.35
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.16
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	96.09
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	95.95
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	95.94
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	95.92
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	95.89
KOG2922	335	consensus Uncharacterized conserved protein [Funct	95.61
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	95.29
COG3169	116	Uncharacterized protein conserved in bacteria [Fun	95.11
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	94.75
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	94.16
COG2962	293	RarD Predicted permeases [General function predict	93.98
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	93.5
KOG1582	367	consensus UDP-galactose transporter related protei	93.19
KOG1580	337	consensus UDP-galactose transporter related protei	92.87
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	92.36
PRK11562	268	nitrite transporter NirC; Provisional	91.78
KOG4510	346	consensus Permease of the drug/metabolite transpor	90.98
KOG1581	327	consensus UDP-galactose transporter related protei	89.85
COG2962	293	RarD Predicted permeases [General function predict	87.4
PRK13499	345	rhamnose-proton symporter; Provisional	86.88
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	85.69
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	85.21
KOG3912	372	consensus Predicted integral membrane protein [Gen	84.23
PF08507	136	COPI_assoc: COPI associated protein; InterPro: IPR	84.05
KOG2765	416	consensus Predicted membrane protein [Function unk	82.73
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	82.24
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	81.92
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	81.9
PRK02237	109	hypothetical protein; Provisional	81.86
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	80.35

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.22  E-value=9e-12  Score=90.11  Aligned_cols=51  Identities=39%  Similarity=0.824  Sum_probs=47.1

Q ss_pred             CCchHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccchhhh
Q 041924            1 MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFAV   51 (66)
Q Consensus         1 ~F~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e~~~~   51 (66)
                      +|.+++||+++++|+++|||++++.+++|+++|+.|++++.|++++|.+.+
T Consensus       287 ~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~  337 (358)
T PLN00411        287 IFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQ  337 (358)
T ss_pred             HHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence            478999999999999999999999999999999999999999887776554

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.54  E-value=1.1e-07  Score=66.02  Aligned_cols=43  Identities=35%  Similarity=0.463  Sum_probs=40.4

Q ss_pred             chHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccc
Q 041924            3 SPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKK   45 (66)
Q Consensus         3 ~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~   45 (66)
                      .-++|++++++|++++||++++.+++|+++|++|+++..|+++
T Consensus       248 ~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~  290 (299)
T PRK11453        248 SLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR  290 (299)
T ss_pred             HHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence            3589999999999999999999999999999999999998875

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.52  E-value=2.5e-08  Score=68.93  Aligned_cols=48  Identities=15%  Similarity=0.222  Sum_probs=42.4

Q ss_pred             CchHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccchh
Q 041924            2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRF   49 (66)
Q Consensus         2 F~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e~~   49 (66)
                      +..+.|++++++|++++||++|+.+++|+++++.|++++.+.|+++++
T Consensus       253 ~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~  300 (302)
T TIGR00817       253 GNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPK  300 (302)
T ss_pred             HhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcC
Confidence            456889999999999999999999999999999999999977655443

specificities overlap.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.51  E-value=1.1e-07  Score=66.03  Aligned_cols=48  Identities=13%  Similarity=0.102  Sum_probs=42.8

Q ss_pred             CchHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccchh
Q 041924            2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRF   49 (66)
Q Consensus         2 F~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e~~   49 (66)
                      +..++|++++++|+++|||+++..+++|+++|++|.+...+..++|.+
T Consensus       241 ~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~  288 (293)
T PRK10532        241 LMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPK  288 (293)
T ss_pred             HHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            456899999999999999999999999999999999999887655443

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.43  E-value=1.8e-07  Score=64.98  Aligned_cols=44  Identities=16%  Similarity=0.215  Sum_probs=40.2

Q ss_pred             CchHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccc
Q 041924            2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKK   45 (66)
Q Consensus         2 F~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~   45 (66)
                      +..+.|+++++++++++||+++..+++|+++|+.|+++..+..+
T Consensus       247 ~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~  290 (295)
T PRK11689        247 ASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR  290 (295)
T ss_pred             HHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence            45789999999999999999999999999999999999977544

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.28  E-value=7.1e-07  Score=61.81  Aligned_cols=45  Identities=20%  Similarity=0.146  Sum_probs=40.6

Q ss_pred             CchHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccccc
Q 041924            2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKK   46 (66)
Q Consensus         2 F~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~   46 (66)
                      +.-+.|+++++++++++||++++.+++|+++|+.|+++..+.+++
T Consensus       245 ~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~  289 (292)
T PRK11272        245 YAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL  289 (292)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence            456899999999999999999999999999999999999876543

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.24  E-value=7.3e-07  Score=58.40  Aligned_cols=38  Identities=37%  Similarity=0.536  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhc
Q 041924            5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLW   42 (66)
Q Consensus         5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~   42 (66)
                      ++|++++++|++||+|.+++.+++|.++|++|..++..
T Consensus       102 ~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510         102 TSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             ccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            58999999999999999999999999999999988764

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.19  E-value=2.5e-06  Score=50.41  Aligned_cols=40  Identities=25%  Similarity=0.429  Sum_probs=37.2

Q ss_pred             CchHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhh
Q 041924            2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVL   41 (66)
Q Consensus         2 F~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~   41 (66)
                      +..++|+++.++++++++|+++..+++|.++++.|++++.
T Consensus        86 ~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   86 LQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            4568999999999999999999999999999999999875

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.18  E-value=2.6e-06  Score=54.49  Aligned_cols=43  Identities=23%  Similarity=0.375  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHH--HhccchhhhhhhhhHHHHHhhhhhhcccccc
Q 041924            5 LQLVIVALFSAI--AFAERLHLGSLIGAFLIVVGLYCVLWGKKKD   47 (66)
Q Consensus         5 L~~V~t~ils~l--~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e   47 (66)
                      +.++++.++++.  +|||++|+.+++|.++|++|++++.++++++
T Consensus        83 l~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~~  127 (129)
T PRK02971         83 LSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTKA  127 (129)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCC
Confidence            344556666664  8999999999999999999999998765543

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.11  E-value=5.9e-06  Score=50.44  Aligned_cols=42  Identities=29%  Similarity=0.532  Sum_probs=39.4

Q ss_pred             hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccc
Q 041924            4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKK   45 (66)
Q Consensus         4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~   45 (66)
                      .++|++++++|+++++|+++..+++|.+++.+|+.++.+.+.
T Consensus        68 ~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   68 SLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            478999999999999999999999999999999999998764

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.09  E-value=4.2e-06  Score=57.60  Aligned_cols=38  Identities=26%  Similarity=0.426  Sum_probs=35.7

Q ss_pred             CchHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhh
Q 041924            2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYC   39 (66)
Q Consensus         2 F~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l   39 (66)
                      +..++|++++++|+++|||+++..+++|+++|+.|+++
T Consensus       243 ~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       243 LRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             ecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            45689999999999999999999999999999999986

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.07  E-value=7.6e-06  Score=50.83  Aligned_cols=38  Identities=21%  Similarity=0.223  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhc
Q 041924            5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLW   42 (66)
Q Consensus         5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~   42 (66)
                      +.+++++++|+++|||++++.+++|.+++++|+.+...
T Consensus        72 l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         72 LNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            68899999999999999999999999999999988653

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=97.99  E-value=5.3e-06  Score=59.47  Aligned_cols=42  Identities=19%  Similarity=0.249  Sum_probs=39.0

Q ss_pred             CchHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcc
Q 041924            2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWG   43 (66)
Q Consensus         2 F~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~   43 (66)
                      ++.+.||+++++|++++||++|+.+++|+++++.|++++.+.
T Consensus       308 ~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        308 ANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             HHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            456899999999999999999999999999999999998764

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.86  E-value=1.6e-05  Score=55.18  Aligned_cols=42  Identities=14%  Similarity=0.211  Sum_probs=37.6

Q ss_pred             CchHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcc
Q 041924            2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWG   43 (66)
Q Consensus         2 F~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~   43 (66)
                      +.-+.|++++++|++++||++++.+++|+++|+.|+.+....
T Consensus       245 ~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~  286 (296)
T PRK15430        245 FQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD  286 (296)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            456899999999999999999999999999998888877653

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.68  E-value=8.9e-05  Score=47.20  Aligned_cols=40  Identities=28%  Similarity=0.516  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccc
Q 041924            5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGK   44 (66)
Q Consensus         5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~   44 (66)
                      +..+.++++++++++|++++.+++|.++|+.|+...-...
T Consensus        66 iG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         66 IGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            5677889999999999999999999999999998886544

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.61  E-value=0.00014  Score=45.52  Aligned_cols=40  Identities=30%  Similarity=0.497  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccc
Q 041924            5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGK   44 (66)
Q Consensus         5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~   44 (66)
                      +..+.++++++++++|++++.+++|.++|+.|+.+.-...
T Consensus        66 lG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         66 VGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4567789999999999999999999999999999986544

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.61  E-value=5.3e-05  Score=50.57  Aligned_cols=37  Identities=24%  Similarity=0.439  Sum_probs=33.9

Q ss_pred             CchHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhh
Q 041924            2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLY   38 (66)
Q Consensus         2 F~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~   38 (66)
                      +..+.|+++++++++++||+++..+++|.++++.|++
T Consensus       224 ~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       224 LALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            3568999999999999999999999999999999863

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.58  E-value=9.9e-05  Score=50.76  Aligned_cols=41  Identities=20%  Similarity=0.393  Sum_probs=37.7

Q ss_pred             chHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcc
Q 041924            3 SPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWG   43 (66)
Q Consensus         3 ~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~   43 (66)
                      ...+|++++++++++++|+++..+++|.++++.|+++..+.
T Consensus        96 ~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~  136 (281)
T TIGR03340        96 ARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS  136 (281)
T ss_pred             HhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            44689999999999999999999999999999999998764

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=97.58  E-value=0.00014  Score=48.08  Aligned_cols=40  Identities=30%  Similarity=0.438  Sum_probs=37.4

Q ss_pred             hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcc
Q 041924            4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWG   43 (66)
Q Consensus         4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~   43 (66)
                      -+.|++++++++++++|+++..+++|+++++.|+.+....
T Consensus       249 ~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         249 LLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            4689999999999999999999999999999999998876

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.44  E-value=0.00016  Score=52.63  Aligned_cols=42  Identities=10%  Similarity=0.171  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccc
Q 041924            6 QLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKD   47 (66)
Q Consensus         6 ~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e   47 (66)
                      +.+++.+++++++|+++++-.++|-++|+.|+.++...++++
T Consensus       269 sd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~  310 (334)
T PF06027_consen  269 SDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPE  310 (334)
T ss_pred             hhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcc
Confidence            467789999999999999999999999999999999876443

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.29  E-value=0.0005  Score=43.10  Aligned_cols=36  Identities=22%  Similarity=0.392  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhh
Q 041924            5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCV   40 (66)
Q Consensus         5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~   40 (66)
                      +..+.+++.++++++|++++.+++|.++|+.|+...
T Consensus        71 iG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         71 FGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            456778999999999999999999999999999875

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.27  E-value=0.0004  Score=46.31  Aligned_cols=41  Identities=27%  Similarity=0.177  Sum_probs=37.5

Q ss_pred             chHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcc
Q 041924            3 SPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWG   43 (66)
Q Consensus         3 ~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~   43 (66)
                      ..++|++++++++++++|+++..+++|.++.+.|+.+....
T Consensus        80 ~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~  120 (260)
T TIGR00950        80 LYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSD  120 (260)
T ss_pred             HhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccC
Confidence            34789999999999999999999999999999999998754

>TIGR00688 rarD rarD protein

Probab=97.27  E-value=0.00049  Score=46.47  Aligned_cols=39  Identities=10%  Similarity=0.253  Sum_probs=36.0

Q ss_pred             hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhc
Q 041924            4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLW   42 (66)
Q Consensus         4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~   42 (66)
                      -..|++++++++++++|+++..+++|.++.++|+.+...
T Consensus       104 ~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~  142 (256)
T TIGR00688       104 LINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV  142 (256)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999999988764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.26  E-value=0.00062  Score=42.86  Aligned_cols=39  Identities=33%  Similarity=0.492  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcc
Q 041924            5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWG   43 (66)
Q Consensus         5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~   43 (66)
                      +..+.+++.++++|+|++++.+++|..++++|+...-+.
T Consensus        66 iG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          66 IGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            346778999999999999999999999999999887654

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.22  E-value=0.00053  Score=47.64  Aligned_cols=40  Identities=25%  Similarity=0.386  Sum_probs=37.5

Q ss_pred             hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcc
Q 041924            4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWG   43 (66)
Q Consensus         4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~   43 (66)
                      .++|+++.++++++++|+++..+++|.++.+.|+++.++.
T Consensus        94 ~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~  133 (299)
T PRK11453         94 QAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED  133 (299)
T ss_pred             HhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence            4789999999999999999999999999999999999865

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.21  E-value=0.00076  Score=41.95  Aligned_cols=37  Identities=22%  Similarity=0.256  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhh
Q 041924            5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVL   41 (66)
Q Consensus         5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~   41 (66)
                      +..+.+++.++++++|++++.+++|..+|+.|+...-
T Consensus        65 iG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         65 IGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence            4567789999999999999999999999999998764

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.15  E-value=0.00075  Score=46.88  Aligned_cols=39  Identities=18%  Similarity=0.407  Sum_probs=36.6

Q ss_pred             hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhc
Q 041924            4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLW   42 (66)
Q Consensus         4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~   42 (66)
                      ...|++++++++++++|+++..+++|.++.+.|+.+..+
T Consensus       107 ~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~  145 (296)
T PRK15430        107 FINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW  145 (296)
T ss_pred             HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999998875

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=97.14  E-value=0.00056  Score=42.46  Aligned_cols=38  Identities=29%  Similarity=0.481  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhc
Q 041924            5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLW   42 (66)
Q Consensus         5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~   42 (66)
                      +-.+.++++|+++++|++|..+++|.++.+.|.+++.|
T Consensus       116 ~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen  116 VKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            45677899999999999999999999999999998764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.02  E-value=0.00041  Score=50.69  Aligned_cols=40  Identities=13%  Similarity=0.223  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccc
Q 041924            5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGK   44 (66)
Q Consensus         5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~   44 (66)
                      .+|++++++||++|+|+.|....+|..+.+.|+.+..+..
T Consensus       132 ssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp  171 (346)
T KOG4510|consen  132 SSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP  171 (346)
T ss_pred             cChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence            5799999999999999999999999999999999988764

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=97.01  E-value=0.00093  Score=47.96  Aligned_cols=39  Identities=23%  Similarity=0.211  Sum_probs=36.9

Q ss_pred             hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhc
Q 041924            4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLW   42 (66)
Q Consensus         4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~   42 (66)
                      .+.|++++++++++++|+++..+++|.+++++|+.+...
T Consensus       148 a~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~  186 (350)
T PTZ00343        148 AAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV  186 (350)
T ss_pred             HhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence            478999999999999999999999999999999999875

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=96.94  E-value=0.001  Score=46.42  Aligned_cols=43  Identities=30%  Similarity=0.476  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccc
Q 041924            5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKD   47 (66)
Q Consensus         5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e   47 (66)
                      +.-++++++|++++++++++.+++|.+++..|..+..+.|+++
T Consensus       260 ~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  260 LRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             HHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence            3456778999999999999999999999999999999887665

; GO: 0055085 transmembrane transport

>PRK11689 aromatic amino acid exporter; Provisional

Probab=96.94  E-value=0.0012  Score=45.88  Aligned_cols=39  Identities=23%  Similarity=0.302  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcc
Q 041924            5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWG   43 (66)
Q Consensus         5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~   43 (66)
                      +.|+++.++++++++|+++..+++|.++-++|+++....
T Consensus       100 ~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~  138 (295)
T PRK11689        100 LWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG  138 (295)
T ss_pred             HhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence            579999999999999999999999999999999998864

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=96.94  E-value=0.0011  Score=46.34  Aligned_cols=40  Identities=20%  Similarity=0.344  Sum_probs=36.4

Q ss_pred             hHHHHHHHHHHHHHhccchhhhhh----hhhHHHHHhhhhhhcc
Q 041924            4 PLQLVIVALFSAIAFAERLHLGSL----IGAFLIVVGLYCVLWG   43 (66)
Q Consensus         4 pL~~V~t~ils~l~LgE~ltl~~i----iG~~lIi~Gi~l~~~~   43 (66)
                      -+.|+.++++++++|||..+..++    +|.++|+.|+.+...+
T Consensus       246 ~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~  289 (290)
T TIGR00776       246 QLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG  289 (290)
T ss_pred             HHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence            467999999999999999999999    9999999999887654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>TIGR00803 nst UDP-galactose transporter

Probab=96.83  E-value=0.00096  Score=44.46  Aligned_cols=36  Identities=19%  Similarity=0.394  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhh
Q 041924            5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCV   40 (66)
Q Consensus         5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~   40 (66)
                      +.+++++++|++++|+++++.+++|+.+++.|++++
T Consensus       187 ~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       187 LSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             HHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            578999999999999999999999999999998763

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=96.73  E-value=0.0021  Score=44.47  Aligned_cols=39  Identities=13%  Similarity=0.110  Sum_probs=35.8

Q ss_pred             hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhc
Q 041924            4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLW   42 (66)
Q Consensus         4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~   42 (66)
                      .++|++++++++++++|+++..+++|.+++++|+.+...
T Consensus        99 ~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~  137 (302)
T TIGR00817        99 AMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASD  137 (302)
T ss_pred             hcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcC
Confidence            468999999999999999999999999999999987653

specificities overlap.

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=96.56  E-value=0.0042  Score=43.01  Aligned_cols=39  Identities=18%  Similarity=0.206  Sum_probs=35.6

Q ss_pred             hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcc
Q 041924            4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWG   43 (66)
Q Consensus         4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~   43 (66)
                      .+.|+++++++++ ++|+++..+++|.++.++|++++.+.
T Consensus       104 ~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~  142 (292)
T PRK11272        104 ATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG  142 (292)
T ss_pred             HHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence            4789999999986 69999999999999999999998765

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=96.56  E-value=0.004  Score=41.14  Aligned_cols=44  Identities=27%  Similarity=0.471  Sum_probs=38.6

Q ss_pred             hHHHHHHHHHHH-HHhccchhhhhhhhhHHHHHhhhhhhcccccc
Q 041924            4 PLQLVIVALFSA-IAFAERLHLGSLIGAFLIVVGLYCVLWGKKKD   47 (66)
Q Consensus         4 pL~~V~t~ils~-l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e   47 (66)
                      ...|++++++++ ++++|+++..+++|.++...|++++.+.....
T Consensus       104 ~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~  148 (292)
T COG0697         104 GLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG  148 (292)
T ss_pred             HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence            468999999997 77799999999999999999999999876443

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=96.56  E-value=0.0035  Score=45.31  Aligned_cols=44  Identities=18%  Similarity=0.154  Sum_probs=38.7

Q ss_pred             hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccc
Q 041924            4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKD   47 (66)
Q Consensus         4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e   47 (66)
                      .|.|.+++..++++|||.+|+.|+.|.+.|+++..=..+.-+++
T Consensus       244 SLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~  287 (292)
T COG5006         244 SLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKP  287 (292)
T ss_pred             HhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCC
Confidence            57899999999999999999999999999999888777765443

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=96.46  E-value=0.0048  Score=44.89  Aligned_cols=42  Identities=21%  Similarity=0.442  Sum_probs=38.1

Q ss_pred             chHHHHHHHHHHHHH------hccchhhhhhhhhHHHHHhhhhhhccc
Q 041924            3 SPLQLVIVALFSAIA------FAERLHLGSLIGAFLIVVGLYCVLWGK   44 (66)
Q Consensus         3 ~pL~~V~t~ils~l~------LgE~ltl~~iiG~~lIi~Gi~l~~~~~   44 (66)
                      ...+|++++++++++      ++|+++..+++|.++-++|+.+++..+
T Consensus       111 ~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~  158 (358)
T PLN00411        111 SNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYH  158 (358)
T ss_pred             HHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHcc
Confidence            467999999999999      699999999999999999999887643

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=96.35  E-value=0.0042  Score=45.32  Aligned_cols=41  Identities=17%  Similarity=0.304  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccc
Q 041924            5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKK   45 (66)
Q Consensus         5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~   45 (66)
                      .+.+++.++|+++|+++.++.+++|.++.++|+.++.++..
T Consensus       114 ~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~  154 (334)
T PF06027_consen  114 TSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV  154 (334)
T ss_pred             hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence            46789999999999999999999999999999999998764

Some of the sequences in this family are annotated as putative membrane proteins.

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.16  E-value=0.0071  Score=36.24  Aligned_cols=29  Identities=38%  Similarity=0.482  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHhccchhhhhhhhhHHH
Q 041924            5 LQLVIVALFSAIAFAERLHLGSLIGAFLI   33 (66)
Q Consensus         5 L~~V~t~ils~l~LgE~ltl~~iiG~~lI   33 (66)
                      +..+.++++|++++||++++.+++|..+|
T Consensus        65 ~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   65 LGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            55678899999999999999999998875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=96.09  E-value=0.0051  Score=42.95  Aligned_cols=47  Identities=13%  Similarity=0.294  Sum_probs=40.9

Q ss_pred             CchHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccch
Q 041924            2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDR   48 (66)
Q Consensus         2 F~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e~   48 (66)
                      +.-..|+.++++++++++++.+..++.+.+++.+|+.++...+.++.
T Consensus        96 ~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~  142 (303)
T PF08449_consen   96 FKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSS  142 (303)
T ss_pred             HhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccc
Confidence            34567899999999999999999999999999999999998764433

; GO: 0055085 transmembrane transport

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=95.95  E-value=0.0067  Score=43.31  Aligned_cols=40  Identities=25%  Similarity=0.406  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccc
Q 041924            5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGK   44 (66)
Q Consensus         5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~   44 (66)
                      ++.++.+++|.++|+|+++...++|.++++.|..+....-
T Consensus        85 ~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~  124 (300)
T PF05653_consen   85 LSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA  124 (300)
T ss_pred             hhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence            4567889999999999999999999999999998776543

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=95.94  E-value=0.007  Score=38.34  Aligned_cols=38  Identities=24%  Similarity=0.280  Sum_probs=33.3

Q ss_pred             chHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhh
Q 041924            3 SPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCV   40 (66)
Q Consensus         3 ~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~   40 (66)
                      |.+.-++|++.++++.+|..+...++|.++|++|+.++
T Consensus        75 Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   75 NSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             hHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            45778999999998888888888999999999999875

Many members are annotated as potential transmembrane proteins.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=95.92  E-value=0.0081  Score=41.65  Aligned_cols=43  Identities=26%  Similarity=0.445  Sum_probs=38.5

Q ss_pred             hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccccc
Q 041924            4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKK   46 (66)
Q Consensus         4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~   46 (66)
                      .+-.++|+++++++|+.+++..|+++.++..+|+.++-.+...
T Consensus        51 q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~   93 (244)
T PF04142_consen   51 QSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ   93 (244)
T ss_pred             hhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence            3568999999999999999999999999999999998876543

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=95.89  E-value=0.01  Score=41.54  Aligned_cols=41  Identities=34%  Similarity=0.452  Sum_probs=36.9

Q ss_pred             hHHHHHHHHHHHHHhccchhhhh----hhhhHHHHHhhhhhhccc
Q 041924            4 PLQLVIVALFSAIAFAERLHLGS----LIGAFLIVVGLYCVLWGK   44 (66)
Q Consensus         4 pL~~V~t~ils~l~LgE~ltl~~----iiG~~lIi~Gi~l~~~~~   44 (66)
                      -++++++++++.+++||..+..+    ++|.++++.|+++....+
T Consensus        94 ~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~  138 (290)
T TIGR00776        94 GFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK  138 (290)
T ss_pred             HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence            36788999999999999999999    999999999999987654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.61  E-value=0.003  Score=46.47  Aligned_cols=47  Identities=26%  Similarity=0.438  Sum_probs=40.4

Q ss_pred             hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccchhh
Q 041924            4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFA   50 (66)
Q Consensus         4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e~~~   50 (66)
                      .++.++.+++|..+|+|.+++..++|+++.+.|-++......+|++.
T Consensus        98 Alsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i  144 (335)
T KOG2922|consen   98 ALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEI  144 (335)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccccc
Confidence            36789999999999999999999999999999999888765554443

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=95.29  E-value=0.017  Score=36.65  Aligned_cols=31  Identities=26%  Similarity=0.362  Sum_probs=28.2

Q ss_pred             HHHHHHHhccchhhhhhhhhHHHHHhhhhhh
Q 041924           11 ALFSAIAFAERLHLGSLIGAFLIVVGLYCVL   41 (66)
Q Consensus        11 ~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~   41 (66)
                      +.+|+++++|++++..+.|.++++.++|++.
T Consensus        77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF  107 (108)
T PF04342_consen   77 APFSVFYLGEPLKWNYLWAFLCILGAVYFIF  107 (108)
T ss_pred             HHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence            6789999999999999999999999988754

>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.11  E-value=0.055  Score=34.35  Aligned_cols=32  Identities=25%  Similarity=0.359  Sum_probs=29.6

Q ss_pred             HHHHHHHhccchhhhhhhhhHHHHHhhhhhhc
Q 041924           11 ALFSAIAFAERLHLGSLIGAFLIVVGLYCVLW   42 (66)
Q Consensus        11 ~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~   42 (66)
                      +.+|.+.|+|++.+..+.|+.++..|+|++.+
T Consensus        84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr  115 (116)
T COG3169          84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR  115 (116)
T ss_pred             HHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence            57899999999999999999999999998764

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=94.75  E-value=0.01  Score=43.12  Aligned_cols=40  Identities=15%  Similarity=0.288  Sum_probs=35.2

Q ss_pred             HHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccchhh
Q 041924           11 ALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFA   50 (66)
Q Consensus        11 ~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e~~~   50 (66)
                      ++.|+++|++++|+.++.|.++.+.|++++.+.|.+++++
T Consensus       276 i~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~  315 (316)
T KOG1441|consen  276 IVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG  315 (316)
T ss_pred             EEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            4568899999999999999999999999999988766553

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=94.16  E-value=0.075  Score=38.02  Aligned_cols=46  Identities=26%  Similarity=0.365  Sum_probs=36.2

Q ss_pred             hHHHHHHHHHHHHHhccchhhhh----hhhhHHHHHhhhhhhcccccchh
Q 041924            4 PLQLVIVALFSAIAFAERLHLGS----LIGAFLIVVGLYCVLWGKKKDRF   49 (66)
Q Consensus         4 pL~~V~t~ils~l~LgE~ltl~~----iiG~~lIi~Gi~l~~~~~~~e~~   49 (66)
                      -++.|.++++++++|||--+..+    +++.++++.|+++-.+.++++++
T Consensus        80 g~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~  129 (269)
T PF06800_consen   80 GLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDK  129 (269)
T ss_pred             hHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccc
Confidence            46789999999999999666554    34778999999999987655543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=93.98  E-value=0.095  Score=38.11  Aligned_cols=41  Identities=20%  Similarity=0.252  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccc
Q 041924            5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKK   45 (66)
Q Consensus         5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~   45 (66)
                      +.|++.++++.+||+|.++..|++.-++-.+|+..-+|..+
T Consensus       107 InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g  147 (293)
T COG2962         107 INPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG  147 (293)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence            67999999999999999999999999999999999888654

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=93.50  E-value=0.18  Score=37.43  Aligned_cols=43  Identities=21%  Similarity=0.389  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccc
Q 041924            5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKD   47 (66)
Q Consensus         5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e   47 (66)
                      ++.+++++.|+.+++-++|+...+|..+++..++++...++++
T Consensus       285 ~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~  327 (345)
T KOG2234|consen  285 VAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD  327 (345)
T ss_pred             HHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence            6789999999999999999999999999999999999766655

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=93.19  E-value=0.16  Score=37.53  Aligned_cols=37  Identities=22%  Similarity=0.506  Sum_probs=34.7

Q ss_pred             HHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccc
Q 041924            9 IVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKK   45 (66)
Q Consensus         9 ~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~   45 (66)
                      +|+++|++++..|+|....-|+.+|+.|+|+-..+|+
T Consensus       299 vTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~  335 (367)
T KOG1582|consen  299 VTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR  335 (367)
T ss_pred             HHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence            5789999999999999999999999999999999884

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=92.87  E-value=0.15  Score=37.11  Aligned_cols=34  Identities=21%  Similarity=0.316  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhh
Q 041924            8 VIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVL   41 (66)
Q Consensus         8 V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~   41 (66)
                      .|+++.|+++++.+++..|++|.+++..++..=.
T Consensus       279 fFTil~SVllf~npls~rQwlgtvlVF~aL~~D~  312 (337)
T KOG1580|consen  279 FFTILISVLLFNNPLSGRQWLGTVLVFSALTADV  312 (337)
T ss_pred             HHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence            5889999999999999999999999999987754

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=92.36  E-value=0.069  Score=39.24  Aligned_cols=38  Identities=24%  Similarity=0.210  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccc
Q 041924            7 LVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGK   44 (66)
Q Consensus         7 ~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~   44 (66)
                      =.++.++|.+.+..++++..++|++++..|.+++.-..
T Consensus       279 KFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~  316 (330)
T KOG1583|consen  279 KFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVW  316 (330)
T ss_pred             HHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            34677899999999999999999999999999988443

>PRK11562 nitrite transporter NirC; Provisional

Probab=91.78  E-value=0.17  Score=36.00  Aligned_cols=36  Identities=14%  Similarity=0.066  Sum_probs=27.8

Q ss_pred             chhhhhhhhhHHHHHhhhhhhcccccchhhhhhhhh
Q 041924           21 RLHLGSLIGAFLIVVGLYCVLWGKKKDRFAVDEQKE   56 (66)
Q Consensus        21 ~ltl~~iiG~~lIi~Gi~l~~~~~~~e~~~~~~~~~   56 (66)
                      +.++|.++||.+++...|.++..+++++.+.|-.|.
T Consensus       228 pvtLGNivGG~v~vg~~y~~~~~~~~~~~~~~~~~~  263 (268)
T PRK11562        228 WVTLGNTLSGAVFMGLGYWYATPKANRPVAAKFNQT  263 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcCchhhhHhhh
Confidence            578899999999999999998887666655543333

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=90.98  E-value=0.15  Score=37.61  Aligned_cols=39  Identities=21%  Similarity=0.313  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccc
Q 041924            6 QLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGK   44 (66)
Q Consensus         6 ~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~   44 (66)
                      ..|++.++..+|+|+-+|+.+++|+++|++....++..|
T Consensus       289 dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k  327 (346)
T KOG4510|consen  289 DVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK  327 (346)
T ss_pred             HHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence            578999999999999999999999999999888888655

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=89.85  E-value=0.18  Score=37.17  Aligned_cols=39  Identities=23%  Similarity=0.467  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccccc
Q 041924            8 VIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKK   46 (66)
Q Consensus         8 V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~   46 (66)
                      ++++++|.+.+|.++++-|++|..++..|+++-+.-+.+
T Consensus       279 ~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~  317 (327)
T KOG1581|consen  279 MVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK  317 (327)
T ss_pred             HHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence            567899999999999999999999999999998876544

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=87.40  E-value=0.99  Score=32.91  Aligned_cols=40  Identities=15%  Similarity=0.226  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccc
Q 041924            5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGK   44 (66)
Q Consensus         5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~   44 (66)
                      +.|.+-.++|++++||+++.-+.+.-++|-+|+.++.+..
T Consensus       246 i~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~  285 (293)
T COG2962         246 IEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG  285 (293)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            5688889999999999999999999999999999999865

>PRK13499 rhamnose-proton symporter; Provisional

Probab=86.88  E-value=1.2  Score=32.82  Aligned_cols=39  Identities=18%  Similarity=0.256  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHhccch-------hhhhhhhhHHHHHhhhhhhcc
Q 041924            5 LQLVIVALFSAIAFAERL-------HLGSLIGAFLIVVGLYCVLWG   43 (66)
Q Consensus         5 L~~V~t~ils~l~LgE~l-------tl~~iiG~~lIi~Gi~l~~~~   43 (66)
                      ++.+++++++.+++||=-       ...-++|.++++.|+.+..+.
T Consensus       109 l~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A  154 (345)
T PRK13499        109 ITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA  154 (345)
T ss_pred             HHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            567888899999998643       233678899999999999984

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.69  E-value=0.34  Score=35.80  Aligned_cols=37  Identities=19%  Similarity=0.271  Sum_probs=33.3

Q ss_pred             hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhh
Q 041924            4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCV   40 (66)
Q Consensus         4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~   40 (66)
                      .|..+|+++++|++|+++-+..-..++.+|+.|..+=
T Consensus       136 sLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lG  172 (347)
T KOG1442|consen  136 SLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLG  172 (347)
T ss_pred             chhhhHHHHhHHhhcccccccccceeehhheehheec
Confidence            4788999999999999999999999999999987663

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.21  E-value=0.2  Score=36.95  Aligned_cols=41  Identities=10%  Similarity=0.074  Sum_probs=37.3

Q ss_pred             HHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccchhhh
Q 041924           11 ALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFAV   51 (66)
Q Consensus        11 ~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e~~~~   51 (66)
                      +++|+.+++|..+..-+-|-++++.|-..+.|.|..|+++.
T Consensus       296 TvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~  336 (347)
T KOG1442|consen  296 TVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKA  336 (347)
T ss_pred             HHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhh
Confidence            68899999999999999999999999999999988777763

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=84.23  E-value=1.1  Score=33.40  Aligned_cols=38  Identities=21%  Similarity=0.335  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcc
Q 041924            6 QLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWG   43 (66)
Q Consensus         6 ~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~   43 (66)
                      ..+|+.++|.-+|+.+++..|+.|...+.+|+..+-..
T Consensus       122 viIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~  159 (372)
T KOG3912|consen  122 VIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL  159 (372)
T ss_pred             hhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence            46889999999999999999999999999999887654

>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []

Probab=84.05  E-value=2.2  Score=26.92  Aligned_cols=32  Identities=22%  Similarity=0.557  Sum_probs=22.8

Q ss_pred             HHHHHHHhccchhhhhhhhhHHHHHhhhhhhcc
Q 041924           11 ALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWG   43 (66)
Q Consensus        11 ~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~   43 (66)
                      +.+|.+.+++ -.+..++|..++..|+.....+
T Consensus        75 if~G~l~~~~-~~~~~i~g~~~~~~G~~~i~l~  106 (136)
T PF08507_consen   75 IFLGTLCLGQ-SILSIIIGLLLFLVGVIYIILG  106 (136)
T ss_pred             HHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777777 4456778888888888776643

In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=82.73  E-value=0.73  Score=35.01  Aligned_cols=41  Identities=27%  Similarity=0.438  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccccc
Q 041924            6 QLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKK   46 (66)
Q Consensus         6 ~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~   46 (66)
                      +-+|+..+|.+|.+|.+|+..+++-++-++|+.++..++.+
T Consensus       195 Ss~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~  235 (416)
T KOG2765|consen  195 SSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSK  235 (416)
T ss_pred             chHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccc
Confidence            45788999999999999999999999999999999988643

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=82.24  E-value=0.18  Score=36.49  Aligned_cols=46  Identities=28%  Similarity=0.445  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHhccchhhhhhh----hhHHHHHhhhhhhcccccchhh
Q 041924            5 LQLVIVALFSAIAFAERLHLGSLI----GAFLIVVGLYCVLWGKKKDRFA   50 (66)
Q Consensus         5 L~~V~t~ils~l~LgE~ltl~~ii----G~~lIi~Gi~l~~~~~~~e~~~   50 (66)
                      .+.|.++.++++.|||=-+..+++    ..++++.|+++-.|.++.++++
T Consensus        95 ~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~  144 (288)
T COG4975          95 MQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEE  144 (288)
T ss_pred             hhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccc
Confidence            367889999999999988887754    4478899999988876544433

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=81.92  E-value=2.2  Score=26.97  Aligned_cols=40  Identities=23%  Similarity=0.288  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccc
Q 041924            6 QLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKK   45 (66)
Q Consensus         6 ~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~   45 (66)
                      -.+.+.+..+.+=+.+++..-++|+.+.+.|..+.++.+|
T Consensus        67 fI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR  106 (107)
T PF02694_consen   67 FIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR  106 (107)
T ss_pred             HHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence            3567788899999999999999999999999999888765

; GO: 0016020 membrane

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=81.90  E-value=1.1  Score=30.95  Aligned_cols=30  Identities=30%  Similarity=0.487  Sum_probs=26.6

Q ss_pred             hHHHHHHHHHHHHHhccchhhhhhhhhHHH
Q 041924            4 PLQLVIVALFSAIAFAERLHLGSLIGAFLI   33 (66)
Q Consensus         4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lI   33 (66)
                      .++.++++++++++++.++++..++|.+++
T Consensus       215 a~siv~t~~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  215 AVSIVLTAVLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             HHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence            467899999999999999999999998764

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK02237 hypothetical protein; Provisional

Probab=81.86  E-value=2.7  Score=26.66  Aligned_cols=39  Identities=18%  Similarity=0.243  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccc
Q 041924            7 LVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKK   45 (66)
Q Consensus         7 ~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~   45 (66)
                      .+.+.+..+++=|.+++..-++|+++.+.|..+.++.+|
T Consensus        70 I~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR  108 (109)
T PRK02237         70 VAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR  108 (109)
T ss_pred             HHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence            456678889999999999999999999999988877654

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=80.35  E-value=1.3  Score=28.41  Aligned_cols=22  Identities=18%  Similarity=0.302  Sum_probs=12.0

Q ss_pred             hhhhhhHHHHHhhhhhhccccc
Q 041924           25 GSLIGAFLIVVGLYCVLWGKKK   46 (66)
Q Consensus        25 ~~iiG~~lIi~Gi~l~~~~~~~   46 (66)
                      |.++|.++++..+++++++.+|
T Consensus        72 gv~aGvIg~Illi~y~irR~~K   93 (122)
T PF01102_consen   72 GVMAGVIGIILLISYCIRRLRK   93 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            3445666676666666654333

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	66
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.66
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.35
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	86.16

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.66  E-value=2e-08  Score=63.92  Aligned_cols=42  Identities=31%  Similarity=0.469  Sum_probs=32.5

Q ss_pred             chHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccc
Q 041924            3 SPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGK   44 (66)
Q Consensus         3 ~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~   44 (66)
                      ..+.|++++++|+++|||++++.+++|.++|++|++++.+.+
T Consensus        64 ~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            457999999999999999999999999999999999998754

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.35  E-value=6e-07  Score=54.55  Aligned_cols=42  Identities=31%  Similarity=0.469  Sum_probs=38.2

Q ss_pred             chHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccc
Q 041924            3 SPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGK   44 (66)
Q Consensus         3 ~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~   44 (66)
                      ..+.|++++++|+++|||++++.+++|.++|++|+++....+
T Consensus        64 ~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             hhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            356899999999999999999999999999999999987643

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=86.16  E-value=0.67  Score=31.76  Aligned_cols=44  Identities=9%  Similarity=-0.102  Sum_probs=23.7

Q ss_pred             hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccc
Q 041924            4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKD   47 (66)
Q Consensus         4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e   47 (66)
                      |+.++++.++..+.+-..-....+.|..+++.|+.++.+.+++.
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~  431 (445)
T 3l1l_A          388 LAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRL  431 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            44555554444333222112234567888888887777655433

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00