Citrus Sinensis ID: 041930
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 320 | ||||||
| 359473467 | 797 | PREDICTED: phosphate transporter PHO1 ho | 0.934 | 0.375 | 0.647 | 4e-98 | |
| 255562946 | 779 | xenotropic and polytropic murine leukemi | 0.968 | 0.397 | 0.655 | 7e-96 | |
| 224108968 | 763 | pho1-like protein [Populus trichocarpa] | 0.946 | 0.397 | 0.592 | 8e-92 | |
| 359497531 | 797 | PREDICTED: phosphate transporter PHO1 ho | 0.931 | 0.373 | 0.574 | 8e-90 | |
| 224101393 | 795 | pho1-like protein [Populus trichocarpa] | 0.937 | 0.377 | 0.617 | 5e-89 | |
| 224144888 | 574 | pho1-like protein [Populus trichocarpa] | 0.962 | 0.536 | 0.597 | 1e-87 | |
| 356577326 | 796 | PREDICTED: phosphate transporter PHO1 ho | 0.937 | 0.376 | 0.587 | 2e-86 | |
| 224108970 | 767 | pho1-like protein [Populus trichocarpa] | 0.959 | 0.400 | 0.592 | 3e-86 | |
| 356577330 | 801 | PREDICTED: phosphate transporter PHO1 ho | 0.946 | 0.378 | 0.559 | 1e-85 | |
| 296087797 | 773 | unnamed protein product [Vitis vinifera] | 0.859 | 0.355 | 0.598 | 1e-85 |
| >gi|359473467|ref|XP_002265020.2| PREDICTED: phosphate transporter PHO1 homolog 3 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 363 bits (933), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 211/326 (64%), Positives = 241/326 (73%), Gaps = 27/326 (8%)
Query: 1 MKFGKEFAAQMVPEWQEAYMDYEYLKALLKEIQRFKRRNRAAAAPGGVGAGAGRLKRKMT 60
MKFGKEF AQMVPEWQ+AYMDY +LK LLKE+QRFK+RNR P LKRKMT
Sbjct: 1 MKFGKEFRAQMVPEWQDAYMDYSFLKTLLKEVQRFKQRNRPPVTPNR------GLKRKMT 54
Query: 61 LYKAFSGLTQKHNDPMSPSSASSSDIESQSAILVNSVSRDGN--HRYETTFLMSSDEGGE 118
LY+AFSGLT +HN P SPS SDIESQ ILVNSV RDG+ YET FLMS+DEGGE
Sbjct: 55 LYRAFSGLT-RHNSPPSPSE---SDIESQ-VILVNSVRRDGDGSESYETKFLMSADEGGE 109
Query: 119 YELVYFRRLDDEFNKVDKFCRAKVQEVEKDAAILNKQMDAFIAFSIKVENPQGIWVDKSV 178
YELVYFRRLDDEFNKVDKF R+KV+EV K+AA+LNKQMDAFIAF +KVENPQG W D+S
Sbjct: 110 YELVYFRRLDDEFNKVDKFYRSKVEEVMKEAALLNKQMDAFIAFRLKVENPQG-WFDRSA 168
Query: 179 ELEMTRLASDVAASTAELSISTPARARTSRRDQHMDVIEE----SIHGLSDETSDDSNDI 234
EL TR+++DVA STA L+ +TP+ R SRR HMDVIEE S H SDE+SD+ D+
Sbjct: 169 EL--TRISNDVATSTATLAATTPSGVRASRRVAHMDVIEEGGSISNHEQSDESSDEHKDV 226
Query: 235 NKECNHTMIKLQNVVQAKIPPVSIKTNNRPDPLEVLDRVKITNTLETPRSTIKGALKVPQ 294
N +IK N + P SIK RP PLEVL RV+I NT+ETPRSTIK L VP+
Sbjct: 227 N------IIKPVNTSVQEQKPSSIKA-TRPAPLEVLKRVRINNTVETPRSTIKEILNVPK 279
Query: 295 HRELKFSREILRKVEDQLKRAFVEFY 320
EL F+R+ LRKVEDQLK AFVEFY
Sbjct: 280 PEELNFTRKNLRKVEDQLKCAFVEFY 305
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562946|ref|XP_002522478.1| xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis] gi|223538363|gb|EEF39970.1| xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224108968|ref|XP_002315034.1| pho1-like protein [Populus trichocarpa] gi|222864074|gb|EEF01205.1| pho1-like protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|359497531|ref|XP_003635556.1| PREDICTED: phosphate transporter PHO1 homolog 3-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224101393|ref|XP_002312260.1| pho1-like protein [Populus trichocarpa] gi|222852080|gb|EEE89627.1| pho1-like protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224144888|ref|XP_002336183.1| pho1-like protein [Populus trichocarpa] gi|222831897|gb|EEE70374.1| pho1-like protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356577326|ref|XP_003556778.1| PREDICTED: phosphate transporter PHO1 homolog 3-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224108970|ref|XP_002315035.1| pho1-like protein [Populus trichocarpa] gi|222864075|gb|EEF01206.1| pho1-like protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356577330|ref|XP_003556780.1| PREDICTED: phosphate transporter PHO1 homolog 3-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|296087797|emb|CBI35053.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 320 | ||||||
| TAIR|locus:2014779 | 813 | AT1G14040 [Arabidopsis thalian | 0.975 | 0.383 | 0.510 | 4e-74 | |
| TAIR|locus:2056941 | 823 | AT2G03240 [Arabidopsis thalian | 0.968 | 0.376 | 0.464 | 6e-64 | |
| TAIR|locus:2056911 | 807 | AT2G03260 [Arabidopsis thalian | 0.946 | 0.375 | 0.470 | 2e-63 | |
| TAIR|locus:2007156 | 777 | AT1G69480 "AT1G69480" [Arabido | 0.578 | 0.238 | 0.380 | 1.3e-35 | |
| TAIR|locus:2056926 | 756 | AT2G03250 [Arabidopsis thalian | 0.528 | 0.223 | 0.428 | 9e-35 | |
| TAIR|locus:2092783 | 800 | AT3G29060 [Arabidopsis thalian | 0.35 | 0.14 | 0.367 | 1.8e-30 | |
| TAIR|locus:2200575 | 750 | AT1G26730 [Arabidopsis thalian | 0.756 | 0.322 | 0.334 | 1.9e-28 | |
| TAIR|locus:2206742 | 751 | AT1G35350 [Arabidopsis thalian | 0.756 | 0.322 | 0.321 | 1e-26 | |
| TAIR|locus:2138038 | 745 | SHB1 "AT4G25350" [Arabidopsis | 0.318 | 0.136 | 0.453 | 2e-25 | |
| TAIR|locus:2012458 | 784 | PHO1;H1 "AT1G68740" [Arabidops | 0.109 | 0.044 | 0.514 | 2.7e-07 |
| TAIR|locus:2014779 AT1G14040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
Identities = 168/329 (51%), Positives = 211/329 (64%)
Query: 1 MKFGKEFAAQMVPEWQEAYMDYEYLKALLKEIQRFKXXXXXXXXXXXXXXXXXXXXXKMT 60
MKFGKEF++QMVPEWQ+AYMDY++LK LLKEI FK K+T
Sbjct: 1 MKFGKEFSSQMVPEWQQAYMDYDFLKTLLKEIITFKRRTNNAPSHGGAKTGGGLNR-KLT 59
Query: 61 LYKAFSGL--TQKHNDPMXXXXXXX----XXXXXXXAILVNSVSRDGNHRYETTFLMSSD 114
LY+AFSGL T +H ILVN+ + +H YETTFLM+++
Sbjct: 60 LYRAFSGLVSTPRHKRSNSSHDVEEGVQLTGSMRSGPILVNTTA---SHGYETTFLMAAE 116
Query: 115 EGGEYELVYFRRLDDEFNKVDKFCRAKVQEVEKDAAILNKQMDAFIAFSIKVENPQGI-W 173
EGGEYELV+FRRLDDEFNKVDKF R KV+EV K+AA+LNKQMDA IAF +KVENP G W
Sbjct: 117 EGGEYELVFFRRLDDEFNKVDKFYRKKVEEVLKEAAMLNKQMDALIAFRVKVENPDGWRW 176
Query: 174 VDKSVELEMTRLASDVAASTAELSISTPARARTS--RRDQHMDVIEESIHGLSDETSDDS 231
+++VE MTRLASD+A S A LS STPA A++ R +HM+ I+E + DD
Sbjct: 177 EERTVE--MTRLASDIATSAAALSASTPAGAKSMKVRSQEHMEAIQEGGSSRAGLMEDDE 234
Query: 232 NDINKECNHTMIKLQNVVQAKIPPVSIKTNNRPDPLEVLDRVKITNTLETPRSTIKGALK 291
D +++ N T + + + ++ RP P++VL RVKI NT ETPRSTIKG LK
Sbjct: 235 EDEDEQ-NETSVVSTGAIDNETTTSRMR-GARPSPIDVLGRVKINNTKETPRSTIKGVLK 292
Query: 292 VPQHRELKFSREILRKVEDQLKRAFVEFY 320
V + +LKFSRE L KVE+ LKRAF+EFY
Sbjct: 293 VSKQTDLKFSRENLMKVEESLKRAFIEFY 321
|
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| TAIR|locus:2056941 AT2G03240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2056911 AT2G03260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2007156 AT1G69480 "AT1G69480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2056926 AT2G03250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2092783 AT3G29060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2200575 AT1G26730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2206742 AT1G35350 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2138038 SHB1 "AT4G25350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2012458 PHO1;H1 "AT1G68740" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00005924001 | SubName- Full=Chromosome undetermined scaffold_161, whole genome shotgun sequence; (797 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 320 | |||
| pfam03105 | 176 | pfam03105, SPX, SPX domain | 6e-18 | |
| COG5408 | 296 | COG5408, COG5408, SPX domain-containing protein [S | 7e-06 | |
| COG5036 | 509 | COG5036, COG5036, SPX domain-containing protein in | 0.002 |
| >gnl|CDD|217372 pfam03105, SPX, SPX domain | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 6e-18
Identities = 39/185 (21%), Positives = 62/185 (33%), Gaps = 58/185 (31%)
Query: 1 MKFGKEFAAQMVPEWQEAYMDYEYLKALLKEIQRFKRRNRAAAAPGGVGAGAGRLKRKMT 60
MKFGK +VPEW++ Y+DY+ LK L+KE+ R K
Sbjct: 1 MKFGKSLERNLVPEWRDKYIDYKALKKLIKELTRAKL----------------------- 37
Query: 61 LYKAFSGLTQKHNDPMSPSSASSSDIESQSAILVNSVSRDGNHRYETTFLMSSDEGGEYE 120
S + E N ++ + E+ F
Sbjct: 38 ---------------------SLTTNEDGEDESSNLLNEEELEEDESEF----------- 65
Query: 121 LVYFRRLDDEFNKVDKFCRAKVQEVEKDAAILNKQMDAFIAFSIKVENPQGIWVDKSVEL 180
F LD E KV+ F + K E+ + L KQ++ + + + DK++
Sbjct: 66 ---FEALDKELEKVNSFYKEKEAELLERLEELEKQLEELEERRDETSSAKSSPSDKNLLK 122
Query: 181 EMTRL 185
L
Sbjct: 123 AFEEL 127
|
We have named this region the SPX domain after (SYG1, Pho81 and XPR1). This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N-terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal. This finding suggests that all the members of this family are involved in G-protein associated signal transduction. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family. The SPX domain of S. cerevisiae low-affinity phosphate transporters Pho87 and Pho90 auto-regulates uptake and prevents efflux. This SPX dependent inhibition is mediated by the physical interaction with Spl2 NUC-2 contains several ankyrin repeats pfam00023. Several members of this family are annotated as XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with murine leukaemia viruses (MLV). The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction and may itself function as a phosphate sensor. Length = 176 |
| >gnl|CDD|227695 COG5408, COG5408, SPX domain-containing protein [Signal transduction mechanisms] | Back alignment and domain information |
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| >gnl|CDD|227369 COG5036, COG5036, SPX domain-containing protein involved in vacuolar polyphosphate accumulation [Inorganic ion transport and metabolism] | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 320 | |||
| KOG1162 | 617 | consensus Predicted small molecule transporter [In | 99.95 | |
| PF03105 | 275 | SPX: SPX domain; InterPro: IPR004331 The SPX domai | 99.88 | |
| KOG1161 | 310 | consensus Protein involved in vacuolar polyphospha | 99.69 | |
| COG5036 | 509 | SPX domain-containing protein involved in vacuolar | 99.22 | |
| COG5408 | 296 | SPX domain-containing protein [Signal transduction | 99.19 |
| >KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-28 Score=246.62 Aligned_cols=100 Identities=61% Similarity=1.003 Sum_probs=87.8
Q ss_pred CcchhhhhhcCchhHHHhccChhhHHHHHHHHHHHHhhhccCCCCCCCCCCCccchhhhhhhhhhccccccCCCCCCCCC
Q 041930 1 MKFGKEFAAQMVPEWQEAYMDYEYLKALLKEIQRFKRRNRAAAAPGGVGAGAGRLKRKMTLYKAFSGLTQKHNDPMSPSS 80 (320)
Q Consensus 1 MKFGK~L~~q~VPEWkdaYIDYk~LKKlIK~i~~~~~~~~~~~~~~~~~~~g~sl~~~lsl~~~fsg~~~r~~~~~s~~~ 80 (320)
|||||+|++|+||||+++||||+.||++||+|...+. .
T Consensus 1 MKFgk~~~~q~~pEW~~ay~dY~~lK~~l~~i~~~~~-----~------------------------------------- 38 (617)
T KOG1162|consen 1 MKFGKELESQLVPEWRQAYIDYKYLKKLLKEIIENKP-----S------------------------------------- 38 (617)
T ss_pred CcchHHHHHhcCHHHHHHhhhHHHHHHHHHHHHhcCC-----C-------------------------------------
Confidence 9999999999999999999999999999999995321 0
Q ss_pred CCCCcchhhhhHhhccccCCCCcchhhhhcccCCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041930 81 ASSSDIESQSAILVNSVSRDGNHRYETTFLMSSDEGGEYELVYFRRLDDEFNKVDKFCRAKVQEVEKDAAILNKQMDAFI 160 (320)
Q Consensus 81 ~~~~d~e~q~~i~v~~~~~dgs~~yqt~~l~~~ee~~e~e~~Ff~~LD~ELnKVN~FY~~Ke~E~~~R~~~L~kQl~~Li 160 (320)
.++|++++..+++++.+.+||++||.||+|||+||++|++|+.+|++.|++||++|+
T Consensus 39 -----------------------~~~t~~~~~~~~~~~~~~~Ff~~ld~el~Kvn~Fy~~k~~e~~~~~~~L~~ql~~~~ 95 (617)
T KOG1162|consen 39 -----------------------SEETTFLMVSEEGGEFEEVFFRRLDEELNKVNKFYKEKVKEAREEAEELNKQLDALI 95 (617)
T ss_pred -----------------------cCccHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012444555566778899999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 041930 161 AFSIK 165 (320)
Q Consensus 161 ~~R~~ 165 (320)
++|.+
T Consensus 96 ~~r~~ 100 (617)
T KOG1162|consen 96 ALRVK 100 (617)
T ss_pred Hhhcc
Confidence 99986
|
|
| >PF03105 SPX: SPX domain; InterPro: IPR004331 The SPX domain is named after SYG1/Pho81/XPR1 proteins | Back alignment and domain information |
|---|
| >KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >COG5036 SPX domain-containing protein involved in vacuolar polyphosphate accumulation [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >COG5408 SPX domain-containing protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 320 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 4e-05
Identities = 45/354 (12%), Positives = 99/354 (27%), Gaps = 107/354 (30%)
Query: 2 KFGKEFAAQMVPEWQEAYMDYEYLKALLKEIQRFKRRNRAAAAPGGVGAGAGRLKRKMTL 61
F F + V + ++ + E + ++
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG-----------------------T 64
Query: 62 YKAFSGLTQKHNDPMSPSSASSSDIESQSAILVNSVSRDGNHRYETTFLMSS------DE 115
+ F L K E V V R Y+ FLMS
Sbjct: 65 LRLFWTLLSKQ--------------EEMVQKFVEEVLRIN---YK--FLMSPIKTEQRQP 105
Query: 116 GGEYELVYFRRLDDEFNKVDKFCRAKVQEVEKDAAILNKQMDAFIAFSIKVENPQGIWVD 175
+ Y + D +N F + V ++ + ++ + + +D
Sbjct: 106 SMMTRM-YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA------LLELRPA--KNVLID 156
Query: 176 ------KSVELEMTRLASDVAASTAELS--------ISTPARARTSRRDQHMDVIEESIH 221
K+ +A DV S ++ + + ++++++ ++
Sbjct: 157 GVLGSGKTW------VALDVCLSYKVQCKMDFKIFWLNL---KNCNSPETVLEMLQKLLY 207
Query: 222 GLS---DETSDDSNDINKECNHTMIKLQNVVQAKIPPVSIKTNNRPDPLEVLDRVKITNT 278
+ SD S++I + +L+ ++++K + L VL V+
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---------PYENCLLVLLNVQNAKA 258
Query: 279 LE----------TPR-STIKGAL--KVPQHRELKFSREILRKVEDQLKRAFVEF 319
T R + L H L L D++K +++
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL--TPDEVKSLLLKY 310
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00