Citrus Sinensis ID: 041947

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
PAGDVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNAHVTKLEGGYSAWVDEGVAGDKPLEELKISCKFR
Secondary Structure (PSIPRED)
cccccEEEcHHHHHHHHHccccEEEcccHHHHHHccccccEEccccccccccccccHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHcccEEccccHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEccHHHHHHHHHcccEEEEcccHHHHHHccccccEEEEEEccccccccccHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHccccccHHHHHHHHHccccccccHHHEEEEEccc
Coil and Loop (DISEMBL)
pagdvasvGVDTAKDLlssghrfldvrtteefneshvhgalnvpylfitqegrvknpefLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNAHvtkleggysawvdegvagdkpleELKISCKFR
Flexible Loop (DISEMBL)
pagdvasvgvdtakdllssghRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNAHVtkleggysawvdegvagdkpleelkisckfr
Low Complexity Region (SEG)
PAGDVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNAHVTKLEGGYSAWVDEGVAGDKPLEELKISCKFR
Disordered region (IsUnstruct)
***************LLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNAHVTKLEGGYSAWVDEGVAG**************
Disordered Region (DISOPRED)
*AGDVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNAHVTKLEGGYSAWVDEGVAGDKPLEELKISCKFR
Disordered Region (DISEMBL)
PAGDVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNAHVTKLEGGYSAWVDEGVAGDKPLEELKISCKFR
Disordered Region (DISPRO)
**GDVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNAHVTKLEGGYSAWVDEGVAGDKPLEELKISCKFR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
PAGDVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNAHVTKLEGGYSAWVDEGVAGDKPLEELKISCKFR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
Q8RUD6	169	Rhodanese-like domain-con	yes	no	0.976	0.727	0.666	5e-44
Q39129	120	Thiosulfate sulfurtransfe	no	no	0.833	0.875	0.509	5e-24
Q9FKW8	136	Thiosulfate sulfurtransfe	no	no	0.841	0.779	0.495	2e-22
F4IPI4	156	Rhodanese-like domain-con	no	no	0.920	0.743	0.421	2e-19
Q38853	182	Rhodanese-like domain-con	no	no	0.857	0.593	0.434	3e-19
P27626	183	Senescence-associated pro	N/A	no	0.865	0.595	0.431	2e-18
P58388	281	3-mercaptopyruvate sulfur	N/A	no	0.817	0.366	0.309	4e-05
P31142	281	3-mercaptopyruvate sulfur	N/A	no	0.817	0.366	0.301	0.0001
Q8NFU3	115	Thiosulfate sulfurtransfe	yes	no	0.809	0.886	0.268	0.0003
Q94A65	224	Rhodanese-like domain-con	no	no	0.841	0.473	0.300	0.0003

>sp|Q8RUD6|STR19_ARATH Rhodanese-like domain-containing protein 19, mitochondrial OS=Arabidopsis thaliana GN=STR19 PE=2 SV=1

 Score =  176 bits (445), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 84/126 (66%), Positives = 99/126 (78%), Gaps = 3/126 (2%)

Query: 4   DVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQV 63
           DV +V V TAK  LS+GHR+LDVRT EEF +SHV  ALN+PY+F T EGRV NP+FL+QV
Sbjct: 40  DVETVDVYTAKGFLSTGHRYLDVRTNEEFAKSHVEEALNIPYMFKTDEGRVINPDFLSQV 99

Query: 64  ASVCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKPLEELK 120
           ASVC K++H+IV CN+GGR  RACVDL N    HV  + GGYSAWVD G AGDKP E+LK
Sbjct: 100 ASVCKKDEHLIVACNAGGRGSRACVDLLNEGYDHVANMGGGYSAWVDAGFAGDKPPEDLK 159

Query: 121 ISCKFR 126
           I+CKFR
Sbjct: 160 IACKFR 165

Arabidopsis thaliana (taxid: 3702)

>sp|Q39129|STR16_ARATH Thiosulfate sulfurtransferase 16, chloroplastic OS=Arabidopsis thaliana GN=STR16 PE=1 SV=2

 Score =  109 bits (273), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 55/108 (50%), Positives = 73/108 (67%), Gaps = 3/108 (2%)

Query: 6   ASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVAS 65
           +SV V  A DLL +GHR+LDVRT EEF++ H  GA+NVPY+     G  KNP+FL QV+S
Sbjct: 9   SSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNPDFLEQVSS 68

Query: 66  VCSKEDHIIVVCNSGGRALRACVDLRNAHVTKLE---GGYSAWVDEGV 110
              + D+IIV C SGGR+++A  DL +A  T ++   GGYSAW   G+
Sbjct: 69  HFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGL 116

Thought to act during the early stages of leaf senescence. Catalyzes the transfer of a sulfur ion from a donor to cyanide or to other thiol compounds. Substrate preference is thiosulfate > 3-mercaptopyruvate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9FKW8|STR18_ARATH Thiosulfate sulfurtransferase 18 OS=Arabidopsis thaliana GN=STR18 PE=1 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/111 (49%), Positives = 71/111 (63%), Gaps = 5/111 (4%)

Query: 2   AGDVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGA--LNVPYLFITQEGRVKNPEF 59
           A +V SV V  AK LL SGH++LDVRT +EF   H   A  +N+PY+  T +GRVKN EF
Sbjct: 11  AEEVVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEF 70

Query: 60  LTQVASVCSKEDHIIVVCNSGGRALRACVDLRNAHVTKLE---GGYSAWVD 107
           L QV+S+ +  D I+V C SG R+L+A  +L  A   K+    GGY AWVD
Sbjct: 71  LEQVSSLLNPADDILVGCQSGARSLKATTELVAAGYKKVRNVGGGYLAWVD 121

Catalyzes the transfer of a sulfur ion from a donor to cyanide or to other thiol compounds. Substrate preference is thiosulfate > 3-mercaptopyruvate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|F4IPI4|STR17_ARATH Rhodanese-like domain-containing protein 17 OS=Arabidopsis thaliana GN=STR17 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 73/121 (60%), Gaps = 5/121 (4%)

Query: 5   VASVGVDTAKDLLSSGHRFLDVRTTEEFNESHV--HGALNVPYLFITQEGRVKNPEFLTQ 62
           V ++ V+ A+ LL SG+ FLDVRT EEF + HV      NVPY   T +G+  NP FL  
Sbjct: 32  VITIDVNQAQKLLDSGYTFLDVRTVEEFKKGHVDSENVFNVPYWLYTPQGQEINPNFLKH 91

Query: 63  VASVCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKPLEEL 119
           V+S+C++ DH+I+ C SG R+L A   L ++    V  ++GGY AWV++        +EL
Sbjct: 92  VSSLCNQTDHLILGCKSGVRSLHATKFLVSSGFKTVRNMDGGYIAWVNKRFPVKVEHKEL 151

Query: 120 K 120
           K
Sbjct: 152 K 152

Arabidopsis thaliana (taxid: 3702)

>sp|Q38853|STR15_ARATH Rhodanese-like domain-containing protein 15, chloroplastic OS=Arabidopsis thaliana GN=STR15 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 68/115 (59%), Gaps = 7/115 (6%)

Query: 7   SVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV 66
           SV V  A++L  +G+R+LDVRT +EF+  H   A+NVPY++    G VKNP FL QV+S 
Sbjct: 72  SVPVRVARELAQAGYRYLDVRTPDEFSIGHPTRAINVPYMYRVGSGMVKNPSFLRQVSSH 131

Query: 67  CSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKPLEE 118
             K D II+ C SG  +  A  DL  A    +T + GGY AW +     + P+EE
Sbjct: 132 FRKHDEIIIGCESGQMSFMASTDLLTAGFTAITDIAGGYVAWTEN----ELPVEE 182

Arabidopsis thaliana (taxid: 3702)

>sp|P27626|DIN1_RAPSA Senescence-associated protein DIN1 OS=Raphanus sativus GN=DIN1 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 68/116 (58%), Gaps = 7/116 (6%)

Query: 6   ASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVAS 65
            SV V  A++L  +G++ LDVRT +EF+  H   A+NVPY++    G VKNP FL QV+S
Sbjct: 72  TSVPVRVARELAQAGYKHLDVRTPDEFSIGHPSRAINVPYMYRVGSGMVKNPSFLRQVSS 131

Query: 66  VCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKPLEE 118
              K D II+ C SG R+L A  +L  A    VT + GGY  W +     + P+EE
Sbjct: 132 HFRKHDEIIIGCESGERSLMASTELLTAGFTGVTDIAGGYVPWTE----NELPVEE 183

Is thought to act during the early stages of leaf senescence.

Raphanus sativus (taxid: 3726)

>sp|P58388|THTM_ECO57 3-mercaptopyruvate sulfurtransferase OS=Escherichia coli O157:H7 GN=sseA PE=3 SV=2

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 55/126 (43%), Gaps = 23/126 (18%)

Query: 15  DLLSSGH----RFLDVRTTEEFN-----------ESHVHGALNVPYLFITQEGRVKNPEF 59
           D+L + H    + +D R    FN             H+ GALNVP+  + +EG +K  + 
Sbjct: 159 DVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDE 218

Query: 60  LTQV--ASVCSKEDHIIVVCNSGGRA---LRACVDLRNAHVTKLEGGYSAWVDEGVAGDK 114
           L  +      S +  IIV C SG  A   L A   L   +V   +G +S W   G   D 
Sbjct: 219 LDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW---GARADL 275

Query: 115 PLEELK 120
           P+E LK
Sbjct: 276 PVEPLK 281

Transfers a sulfur ion to cyanide or to other thiol compounds. Also has weak rhodanese activity. Its participation in detoxification of cyanide may be small. May be involved in the enhancement of serine sensitivity.

Escherichia coli O157:H7 (taxid: 83334)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 2

>sp|P31142|THTM_ECOLI 3-mercaptopyruvate sulfurtransferase OS=Escherichia coli (strain K12) GN=sseA PE=1 SV=3

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 23/126 (18%)

Query: 15  DLLSSGH----RFLDVRTTEEFN-----------ESHVHGALNVPYLFITQEGRVKNPEF 59
           D+L + H    + +D R    FN             H+ GALNVP+  + +EG +K  + 
Sbjct: 159 DVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDE 218

Query: 60  LTQV--ASVCSKEDHIIVVCNSGGRA---LRACVDLRNAHVTKLEGGYSAWVDEGVAGDK 114
           L  +      S +  IIV C SG  A   L A   L   +V   +G +S W   G   D 
Sbjct: 219 LDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW---GARADL 275

Query: 115 PLEELK 120
           P+E +K
Sbjct: 276 PVEPVK 281

Transfers a sulfur ion to cyanide or to other thiol compounds. Also has weak rhodanese activity (130-fold lower). Its participation in detoxification of cyanide may be small. May be involved in the enhancement of serine sensitivity.

Escherichia coli (strain K12) (taxid: 83333)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 2

>sp|Q8NFU3|TSTD1_HUMAN Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 1 OS=Homo sapiens GN=TSTD1 PE=1 SV=3

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 7   SVGVDTAKDLLSSGH-RFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVAS 65
           +V +   + LL+SG  R  DVR+ EE     + GALN+P   +    +++   F    ++
Sbjct: 6   TVSLPELRSLLASGRARLFDVRSREEAAAGTIPGALNIPVSELESALQMEPAAFQALYSA 65

Query: 66  VCSK--EDHIIVVCNSGGRALRACVDLRNAHVT---KLEGGYSAWVDE 108
              K  ++H++  C  G R L+A    R+   T      G Y  W+++
Sbjct: 66  EKPKLEDEHLVFFCQMGKRGLQATQLARSLGYTGARNYAGAYREWLEK 113

Possible role in tumorigenesis.

Homo sapiens (taxid: 9606)

>sp|Q94A65|STR14_ARATH Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana GN=At4g27700 PE=2 SV=1

 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 56/143 (39%), Gaps = 37/143 (25%)

Query: 5   VASVGVDTAKDLLSSGHR-FLDVRTTEEFNESHVHGALNVPYLFITQE------------ 51
           V SV V  A+ L    +   LDVR   E+   H  GA+NV    + +E            
Sbjct: 74  VRSVDVKEAQRLQKENNFVILDVRPEAEYKAGHPPGAINVEMYRLIREWTAWDIARRLGF 133

Query: 52  -------GRVKNPEFLTQVASVCSKEDHIIVVCNSGG--------------RALRACVDL 90
                  G  +NPEF+  V +   KE  IIV C+S G              R+L A   L
Sbjct: 134 AFFGIFSGTEENPEFIQSVEAKLDKEAKIIVACSSAGTMKPTQNLPEGQQSRSLIAAYLL 193

Query: 91  ---RNAHVTKLEGGYSAWVDEGV 110
                 +V  LEGG   W  EG+
Sbjct: 194 VLNGYKNVFHLEGGIYTWGKEGL 216

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
224131162	135	predicted protein [Populus trichocarpa]	0.976	0.911	0.690	6e-45
297821295	140	predicted protein [Arabidopsis lyrata su	0.976	0.878	0.674	8e-43
110743877	157	hypothetical protein [Arabidopsis thalia	0.976	0.783	0.666	3e-42
30725286	140	At2g21045 [Arabidopsis thaliana]	0.976	0.878	0.666	3e-42
79558700	169	rhodanese-like domain-containing protein	0.976	0.727	0.666	4e-42
357447029	137	Thiosulfate sulfurtransferase [Medicago	0.976	0.897	0.625	3e-40
388497430	136	unknown [Lotus japonicus]	0.976	0.904	0.637	6e-40
449458672	130	PREDICTED: rhodanese-like domain-contain	0.952	0.923	0.658	2e-39
363814528	145	uncharacterized protein LOC100794624 [Gl	0.976	0.848	0.622	2e-39
357450901	153	Thiosulfate sulfurtransferase [Medicago	0.976	0.803	0.555	3e-36

>gi|224131162|ref|XP_002321016.1| predicted protein [Populus trichocarpa] gi|222861789|gb|EEE99331.1| predicted protein [Populus trichocarpa]

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 87/126 (69%), Positives = 104/126 (82%), Gaps = 3/126 (2%)

Query: 4   DVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQV 63
           DV +V V  AK L++SGHR+LDVRT EEFN+SHV  ALNVP++F T EGRVKNPEFL++V
Sbjct: 9   DVITVDVHAAKGLIASGHRYLDVRTAEEFNKSHVDNALNVPFMFKTDEGRVKNPEFLSKV 68

Query: 64  ASVCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKPLEELK 120
           AS+CSK+D+++V CNSGGR+LRAC+DL  A   HVT +EGGYSAWVD G AGDKP EELK
Sbjct: 69  ASICSKDDYLVVGCNSGGRSLRACIDLLGAGFEHVTNMEGGYSAWVDSGFAGDKPAEELK 128

Query: 121 ISCKFR 126
             CKFR
Sbjct: 129 TFCKFR 134

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821295|ref|XP_002878530.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297324369|gb|EFH54789.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  178 bits (451), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 85/126 (67%), Positives = 99/126 (78%), Gaps = 3/126 (2%)

Query: 4   DVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQV 63
           DV +V V TAK  LS+GHR+LDVRT EEF +SHV  ALN+PY+F T EGRV NP+FL QV
Sbjct: 11  DVETVDVYTAKGFLSTGHRYLDVRTNEEFAKSHVEDALNIPYMFQTDEGRVINPDFLPQV 70

Query: 64  ASVCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKPLEELK 120
           ASVC K++H+IV CN+GGR  RACVDL NA   HV  + GGYSAWVD G AGDKP EELK
Sbjct: 71  ASVCKKDEHMIVACNAGGRGSRACVDLLNAGYEHVANMGGGYSAWVDAGFAGDKPREELK 130

Query: 121 ISCKFR 126
           I+C+FR
Sbjct: 131 IACQFR 136

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110743877|dbj|BAE99773.1| hypothetical protein [Arabidopsis thaliana]

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 84/126 (66%), Positives = 99/126 (78%), Gaps = 3/126 (2%)

Query: 4   DVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQV 63
           DV +V V TAK  LS+GHR+LDVRT EEF +SHV  ALN+PY+F T EGRV NP+FL+QV
Sbjct: 28  DVETVDVYTAKGFLSTGHRYLDVRTNEEFAKSHVEEALNIPYMFKTDEGRVINPDFLSQV 87

Query: 64  ASVCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKPLEELK 120
           ASVC K++H+IV CN+GGR  RACVDL N    HV  + GGYSAWVD G AGDKP E+LK
Sbjct: 88  ASVCKKDEHLIVACNAGGRGSRACVDLLNEGYDHVANMGGGYSAWVDAGFAGDKPPEDLK 147

Query: 121 ISCKFR 126
           I+CKFR
Sbjct: 148 IACKFR 153

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30725286|gb|AAP37665.1| At2g21045 [Arabidopsis thaliana]

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 84/126 (66%), Positives = 99/126 (78%), Gaps = 3/126 (2%)

Query: 4   DVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQV 63
           DV +V V TAK  LS+GHR+LDVRT EEF +SHV  ALN+PY+F T EGRV NP+FL+QV
Sbjct: 11  DVETVDVYTAKGFLSTGHRYLDVRTNEEFAKSHVEEALNIPYMFKTDEGRVINPDFLSQV 70

Query: 64  ASVCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKPLEELK 120
           ASVC K++H+IV CN+GGR  RACVDL N    HV  + GGYSAWVD G AGDKP E+LK
Sbjct: 71  ASVCKKDEHLIVACNAGGRGSRACVDLLNEGYDHVANMGGGYSAWVDAGFAGDKPPEDLK 130

Query: 121 ISCKFR 126
           I+CKFR
Sbjct: 131 IACKFR 136

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79558700|ref|NP_565497.3| rhodanese-like domain-containing protein [Arabidopsis thaliana] gi|75158417|sp|Q8RUD6.1|STR19_ARATH RecName: Full=Rhodanese-like domain-containing protein 19, mitochondrial; AltName: Full=Sulfurtransferase 19; Short=AtStr19; Flags: Precursor gi|20197696|gb|AAM15209.1| senescence-associated protein [Arabidopsis thaliana] gi|20197726|gb|AAM15226.1| senescence-associated protein [Arabidopsis thaliana] gi|330252021|gb|AEC07115.1| rhodanese-like domain-containing protein [Arabidopsis thaliana]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 84/126 (66%), Positives = 99/126 (78%), Gaps = 3/126 (2%)

Query: 4   DVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQV 63
           DV +V V TAK  LS+GHR+LDVRT EEF +SHV  ALN+PY+F T EGRV NP+FL+QV
Sbjct: 40  DVETVDVYTAKGFLSTGHRYLDVRTNEEFAKSHVEEALNIPYMFKTDEGRVINPDFLSQV 99

Query: 64  ASVCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKPLEELK 120
           ASVC K++H+IV CN+GGR  RACVDL N    HV  + GGYSAWVD G AGDKP E+LK
Sbjct: 100 ASVCKKDEHLIVACNAGGRGSRACVDLLNEGYDHVANMGGGYSAWVDAGFAGDKPPEDLK 159

Query: 121 ISCKFR 126
           I+CKFR
Sbjct: 160 IACKFR 165

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447029|ref|XP_003593790.1| Thiosulfate sulfurtransferase [Medicago truncatula] gi|355482838|gb|AES64041.1| Thiosulfate sulfurtransferase [Medicago truncatula]

 Score =  169 bits (428), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 80/128 (62%), Positives = 101/128 (78%), Gaps = 5/128 (3%)

Query: 4   DVASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQ 62
           +V ++ V  AKDLL SSG+ +LDVR+ EEFN+SHV  A+NVPY+F T+EGRVKNP+F+ Q
Sbjct: 9   NVVTLDVHAAKDLLHSSGYNYLDVRSVEEFNKSHVENAINVPYMFKTEEGRVKNPDFVNQ 68

Query: 63  VASVCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDEGVAG-DKPLEE 118
           VA++C  EDH+IV CNSGGR++RACVDL N+   H+  + GGYSAWVD G AG DKP  E
Sbjct: 69  VAAICKSEDHLIVACNSGGRSIRACVDLHNSGFQHIVNMGGGYSAWVDAGFAGDDKPANE 128

Query: 119 LKISCKFR 126
           LK +CKFR
Sbjct: 129 LKTACKFR 136

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497430|gb|AFK36781.1| unknown [Lotus japonicus]

 Score =  168 bits (426), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 81/127 (63%), Positives = 99/127 (77%), Gaps = 4/127 (3%)

Query: 4   DVASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQ 62
           DV +V V+ AKDLL SSG+R+LDVRT EEFN+SHV  ALN+ Y+F T+ GRVKNP+FL Q
Sbjct: 9   DVVNVDVEAAKDLLNSSGYRYLDVRTVEEFNKSHVDNALNIAYMFSTEAGRVKNPDFLDQ 68

Query: 63  VASVCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKPLEEL 119
           VA+VC  EDH++V CNSGGR  +A +DL ++   HV  + GGYSAWVD G AGDKP EEL
Sbjct: 69  VAAVCKSEDHLLVACNSGGRGRKAVIDLLDSGYKHVFNMGGGYSAWVDAGFAGDKPAEEL 128

Query: 120 KISCKFR 126
           K +CKFR
Sbjct: 129 KTACKFR 135

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458672|ref|XP_004147071.1| PREDICTED: rhodanese-like domain-containing protein 19, mitochondrial-like [Cucumis sativus] gi|449489762|ref|XP_004158408.1| PREDICTED: rhodanese-like domain-containing protein 19, mitochondrial-like [Cucumis sativus]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/123 (65%), Positives = 92/123 (74%), Gaps = 3/123 (2%)

Query: 7   SVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV 66
           +V V  AKDLL  G   LDVRT EE+N+ HV  ALNVPY+F T EG+VKNP+FL QV S+
Sbjct: 4   TVDVQVAKDLLEKGRLCLDVRTVEEYNKGHVENALNVPYVFFTPEGQVKNPDFLAQVTSI 63

Query: 67  CSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKPLEELKISC 123
             KEDHI+V CN GGR LRACVDL NA   HV  + GGYSAWVD G AG+KP EELKI+C
Sbjct: 64  LKKEDHIVVNCNRGGRGLRACVDLLNAGFEHVNNMGGGYSAWVDSGFAGEKPPEELKIAC 123

Query: 124 KFR 126
           KFR
Sbjct: 124 KFR 126

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814528|ref|NP_001241883.1| uncharacterized protein LOC100794624 [Glycine max] gi|255640578|gb|ACU20574.1| unknown [Glycine max]

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/127 (62%), Positives = 101/127 (79%), Gaps = 4/127 (3%)

Query: 4   DVASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQ 62
           +V ++ V  AKDLL SSG+R+LDVR+ EEFN+SHV  A NVPY+FIT+ GRVKNP+F+ Q
Sbjct: 9   NVVTINVRAAKDLLNSSGYRYLDVRSVEEFNKSHVENAHNVPYVFITEAGRVKNPDFVDQ 68

Query: 63  VASVCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKPLEEL 119
           VA++C  EDH+IV CNSGGR+LRA VDL ++   ++  + GGYSAWVD G AG+KP E+L
Sbjct: 69  VAAICKTEDHLIVACNSGGRSLRASVDLLDSGFKNIVNMGGGYSAWVDAGFAGNKPGEDL 128

Query: 120 KISCKFR 126
           K SCKFR
Sbjct: 129 KTSCKFR 135

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450901|ref|XP_003595727.1| Thiosulfate sulfurtransferase [Medicago truncatula] gi|355484775|gb|AES65978.1| Thiosulfate sulfurtransferase [Medicago truncatula]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 80/144 (55%), Positives = 97/144 (67%), Gaps = 21/144 (14%)

Query: 4   DVASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQ 62
           DV ++ V   KDLL SSG+ +LDVRT EEFN+SHV  A+NVPYLF T+EGRVKNP+F+ Q
Sbjct: 9   DVVTLDVHATKDLLDSSGYNYLDVRTVEEFNKSHVENAINVPYLFSTEEGRVKNPDFVNQ 68

Query: 63  VASVCSKEDHIIVVCNSGGRALRACVDLRNA-------------------HVTKLEGGYS 103
           V ++   EDH+IV CN+GGR+ RA VDL N+                   H+  + GGYS
Sbjct: 69  VEAIYKSEDHLIVACNAGGRSSRAWVDLHNSERIGDDNKWILTLLLLGFKHIVNMGGGYS 128

Query: 104 AWVDEGVAG-DKPLEELKISCKFR 126
           AWVD G AG DKP EELK SCKFR
Sbjct: 129 AWVDAGFAGDDKPAEELKTSCKFR 152

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
TAIR|locus:505006261	169	AT2G21045 [Arabidopsis thalian	0.976	0.727	0.666	1.7e-41
TAIR|locus:2156937	120	STR16 "AT5G66040" [Arabidopsis	0.833	0.875	0.509	2.9e-23
UNIPROTKB|B2C7Y6	185	NRIP1 "Chloroplast N receptor-	0.849	0.578	0.472	7e-22
TAIR|locus:2156882	138	STR18 "AT5G66170" [Arabidopsis	0.841	0.768	0.486	2.4e-21
TAIR|locus:2827795	156	AT2G17850 "AT2G17850" [Arabido	0.920	0.743	0.421	5.1e-19
TAIR|locus:2128038	182	SEN1 "AT4G35770" [Arabidopsis	0.857	0.593	0.434	8.3e-19
UNIPROTKB|Q722U1	99	LMOf2365_0638 "Rhodanese-like	0.658	0.838	0.340	7e-06
ASPGD|ASPL0000068718	522	AN7113 [Emericella nidulans (t	0.761	0.183	0.330	1.1e-05
UNIPROTKB|Q604K3	145	MCA2536 "Rhodanese domain prot	0.587	0.510	0.321	1.5e-05
UNIPROTKB|Q8NFU3	115	TSTD1 "Thiosulfate sulfurtrans	0.809	0.886	0.287	1.9e-05

TAIR|locus:505006261 AT2G21045 [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 84/126 (66%), Positives = 99/126 (78%)

Query:     4 DVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQV 63
             DV +V V TAK  LS+GHR+LDVRT EEF +SHV  ALN+PY+F T EGRV NP+FL+QV
Sbjct:    40 DVETVDVYTAKGFLSTGHRYLDVRTNEEFAKSHVEEALNIPYMFKTDEGRVINPDFLSQV 99

Query:    64 ASVCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKPLEELK 120
             ASVC K++H+IV CN+GGR  RACVDL N    HV  + GGYSAWVD G AGDKP E+LK
Sbjct:   100 ASVCKKDEHLIVACNAGGRGSRACVDLLNEGYDHVANMGGGYSAWVDAGFAGDKPPEDLK 159

Query:   121 ISCKFR 126
             I+CKFR
Sbjct:   160 IACKFR 165

GO:0005737 "cytoplasm" evidence=ISM

GO:0007568 "aging" evidence=ISS;TAS

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2156937 STR16 "AT5G66040" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 55/108 (50%), Positives = 73/108 (67%)

Query:     6 ASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVAS 65
             +SV V  A DLL +GHR+LDVRT EEF++ H  GA+NVPY+     G  KNP+FL QV+S
Sbjct:     9 SSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNPDFLEQVSS 68

Query:    66 VCSKEDHIIVVCNSGGRALRACVDLRNAHVTKLE---GGYSAWVDEGV 110
                + D+IIV C SGGR+++A  DL +A  T ++   GGYSAW   G+
Sbjct:    69 HFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGL 116

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

UNIPROTKB|B2C7Y6 NRIP1 "Chloroplast N receptor-interacting protein 1" [Nicotiana benthamiana (taxid:4100)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 52/110 (47%), Positives = 67/110 (60%)

Query:     7 SVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV 66
             SV V  A +LL +GHR+LDVRT EEF++ H  GA+N+PY+F    G +KNP F  QV   
Sbjct:    75 SVPVRVALELLQAGHRYLDVRTAEEFSDGHAPGAINIPYMFRIGSGMIKNPNFAEQVLEH 134

Query:    67 CSKEDHIIVVCNSGGRALRACVDLRNAH---VTKLEGGYSAWVDEGVAGD 113
               K+D IIV C  G R+  A  DL  A    VT + GGY+AW + G+  D
Sbjct:   135 FGKDDEIIVGCQLGKRSFMAATDLLAAGFSGVTDIAGGYAAWTENGLPTD 184

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2156882 STR18 "AT5G66170" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 55/113 (48%), Positives = 71/113 (62%)

Query:     2 AGDVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGA--LNVPYLFITQEGRVKNPEF 59
             A +V SV V  AK LL SGH++LDVRT +EF   H   A  +N+PY+  T +GRVKN EF
Sbjct:    11 AEEVVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEF 70

Query:    60 LTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA-----HVTKLEGGYSAWVD 107
             L QV+S+ +  D I+V C SG R+L+A  +L  A      V  + GGY AWVD
Sbjct:    71 LEQVSSLLNPADDILVGCQSGARSLKATTELVAAVSGYKKVRNVGGGYLAWVD 123

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2827795 AT2G17850 "AT2G17850" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 51/121 (42%), Positives = 73/121 (60%)

Query:     5 VASVGVDTAKDLLSSGHRFLDVRTTEEFNESHV--HGALNVPYLFITQEGRVKNPEFLTQ 62
             V ++ V+ A+ LL SG+ FLDVRT EEF + HV      NVPY   T +G+  NP FL  
Sbjct:    32 VITIDVNQAQKLLDSGYTFLDVRTVEEFKKGHVDSENVFNVPYWLYTPQGQEINPNFLKH 91

Query:    63 VASVCSKEDHIIVVCNSGGRALRACVDLRNAH---VTKLEGGYSAWVDEGVAGDKPLEEL 119
             V+S+C++ DH+I+ C SG R+L A   L ++    V  ++GGY AWV++        +EL
Sbjct:    92 VSSLCNQTDHLILGCKSGVRSLHATKFLVSSGFKTVRNMDGGYIAWVNKRFPVKVEHKEL 151

Query:   120 K 120
             K
Sbjct:   152 K 152

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2128038 SEN1 "AT4G35770" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 50/115 (43%), Positives = 68/115 (59%)

Query:     7 SVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV 66
             SV V  A++L  +G+R+LDVRT +EF+  H   A+NVPY++    G VKNP FL QV+S 
Sbjct:    72 SVPVRVARELAQAGYRYLDVRTPDEFSIGHPTRAINVPYMYRVGSGMVKNPSFLRQVSSH 131

Query:    67 CSKEDHIIVVCNSGGRALRACVDLRNAH---VTKLEGGYSAWVDEGVAGDKPLEE 118
               K D II+ C SG  +  A  DL  A    +T + GGY AW +     + P+EE
Sbjct:   132 FRKHDEIIIGCESGQMSFMASTDLLTAGFTAITDIAGGYVAWTEN----ELPVEE 182

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=IEP;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

UNIPROTKB|Q722U1 LMOf2365_0638 "Rhodanese-like domain protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 33/97 (34%), Positives = 49/97 (50%)

Query:    11 DTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKE 70
             D  +DL  + H  LDVR  + F E H+  A+N+P   I +      PE   ++AS+  KE
Sbjct:     9 DLEQDLKKASHNILDVRDADAFVEGHIPDAINIP---INEL-----PE---KLASL-DKE 56

Query:    71 DHIIVVCNSGGRALRACVDL--RNAHVTKLEGGYSAW 105
                 ++C +GGR+ RA   L      VT + GG  A+
Sbjct:    57 KPYTIICYAGGRSERASQFLAAEGFDVTNVMGGMGAF 93

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000068718 AN7113 [Emericella nidulans (taxid:162425)]

 Score = 112 (44.5 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 37/112 (33%), Positives = 51/112 (45%)

Query:    24 LDVRTTEEFNESHVHGALNVPYLFITQEGR--VKNP----------EFLTQVASVCSK-- 69
             LD+RT  +F + H+ G++N P   +T        NP          E L    SV SK  
Sbjct:   388 LDIRTAPDFAQWHLPGSVNYPLKSLTSHTPKPFSNPAVLEAQWLELESLLNKESVLSKLG 447

Query:    70 EDHIIVVCNSGGRALRACVDLR--NAHVTKLEGGYSAWVDEGVAGDKPLEEL 119
               H++V+C  G  A  A   LR        L GGY A  D+G+ GD  +EE+
Sbjct:   448 NQHVLVICYHGDTARVATSVLRAQGIQADSLRGGYQALRDQGLWGDGGVEEI 499

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q604K3 MCA2536 "Rhodanese domain protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 28/87 (32%), Positives = 44/87 (50%)

Query:    24 LDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRA 83
             +DVR   EF E H+ GA ++P       G+++  E  +++A    KE  +IV C  G R+
Sbjct:    57 VDVREPAEFAEGHIEGAYHIPL------GKLE--ERASEIAQY--KEKPVIVTCQQGTRS 106

Query:    84 LRACVDLRN---AHVTKLEGGYSAWVD 107
               AC  L     + + ++ GG  AW D
Sbjct:   107 PSACKTLTKQGFSRIYEMRGGMLAWRD 133

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8NFU3 TSTD1 "Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 31/108 (28%), Positives = 51/108 (47%)

Query:     7 SVGVDTAKDLLSSGH-RFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVAS 65
             +V +   + LL+SG  R  DVR+ EE     + GALN+P   +    +++   F    ++
Sbjct:     6 TVSLPELRSLLASGRARLFDVRSREEAAAGTIPGALNIPVSELESALQMEPAAFQALYSA 65

Query:    66 VCSK-ED-HIIVVCNSGGRALRACVDLRNAHVT---KLEGGYSAWVDE 108
                K ED H++  C  G R L+A    R+   T      G Y  W+++
Sbjct:    66 EKPKLEDEHLVFFCQMGKRGLQATQLARSLGYTGARNYAGAYREWLEK 113

GO:0005739 "mitochondrion" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RUD6	STR19_ARATH	No assigned EC number	0.6666	0.9761	0.7278	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.8.1.1	0.914
3rd Layer	2.8.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	126
PLN02160	136	PLN02160, PLN02160, thiosulfate sulfurtransferase	2e-28
cd00158	89	cd00158, RHOD, Rhodanese Homology Domain (RHOD); a	1e-18
smart00450	100	smart00450, RHOD, Rhodanese Homology Domain	2e-16
pfam00581	106	pfam00581, Rhodanese, Rhodanese-like domain	5e-16
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	3e-12
COG0607	110	COG0607, PspE, Rhodanese-related sulfurtransferase	1e-08
PRK05597	355	PRK05597, PRK05597, molybdopterin biosynthesis pro	2e-08
cd01522	117	cd01522, RHOD_1, Member of the Rhodanese Homology	7e-07
cd01523	100	cd01523, RHOD_Lact_B, Member of the Rhodanese Homo	8e-07
TIGR03167	311	TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine s	3e-06
cd01528	101	cd01528, RHOD_2, Member of the Rhodanese Homology	3e-06
cd01526	122	cd01526, RHOD_ThiF, Member of the Rhodanese Homolo	7e-06
cd01519	106	cd01519, RHOD_HSP67B2, Member of the Rhodanese Hom	2e-05
cd01449	118	cd01449, TST_Repeat_2, Thiosulfate sulfurtransfera	2e-05
cd01529	96	cd01529, 4RHOD_Repeats, Member of the Rhodanese Ho	6e-05
TIGR02981	101	TIGR02981, phageshock_pspE, phage shock operon rho	9e-05
cd01521	110	cd01521, RHOD_PspE2, Member of the Rhodanese Homol	1e-04
PRK07411	390	PRK07411, PRK07411, hypothetical protein; Validate	1e-04
cd01447	103	cd01447, Polysulfide_ST, Polysulfide-sulfurtransfe	1e-04
PRK11784	345	PRK11784, PRK11784, tRNA 2-selenouridine synthase;	2e-04
cd01527	99	cd01527, RHOD_YgaP, Member of the Rhodanese Homolo	5e-04
PRK10287	104	PRK10287, PRK10287, thiosulfate:cyanide sulfurtran	7e-04
cd01446	132	cd01446, DSP_MapKP, N-terminal regulatory rhodanes	0.002
cd01520	128	cd01520, RHOD_YbbB, Member of the Rhodanese Homolo	0.003
PRK07878	392	PRK07878, PRK07878, molybdopterin biosynthesis-lik	0.003
cd01524	90	cd01524, RHOD_Pyr_redox, Member of the Rhodanese H	0.003

>gnl|CDD|177819 PLN02160, PLN02160, thiosulfate sulfurtransferase

 Score =  100 bits (250), Expect = 2e-28
 Identities = 55/111 (49%), Positives = 70/111 (63%), Gaps = 5/111 (4%)

Query: 2   AGDVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGA--LNVPYLFITQEGRVKNPEF 59
           A +V SV V  AK LL SGH++LDVRT +EF   H   A  +N+PY+  T +GRVKN EF
Sbjct: 11  AEEVVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEF 70

Query: 60  LTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVD 107
           L QV+S+ +  D I+V C SG R+L+A  +L  A    V    GGY AWVD
Sbjct: 71  LEQVSSLLNPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVD 121

Length = 136

>gnl|CDD|238089 cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

 Score = 73.9 bits (182), Expect = 1e-18
 Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 13/99 (13%)

Query: 11  DTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKE 70
           +  + L       LDVR  EE+   H+ GA+N+P   + +   +              K+
Sbjct: 1   ELKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEERAALLEL----------DKD 50

Query: 71  DHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWV 106
             I+V C SG R+ RA   LR A   +V  LEGG  AW 
Sbjct: 51  KPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins. Length = 89

>gnl|CDD|197731 smart00450, RHOD, Rhodanese Homology Domain

 Score = 68.6 bits (168), Expect = 2e-16
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 20  GHRFLDVRTTEEFNESHVHGALNVPY-LFITQEGRVKNPEFLTQVASV-CSKEDHIIVVC 77
               LDVR+ EE+   H+ GA+N+P    + + G +   EF   +  +   K+  ++V C
Sbjct: 4   KVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYC 63

Query: 78  NSGGRALRACVDLRNAHVTK---LEGGYSAWVDEG 109
            SG R+ +A   LR         L+GGY  W   G
Sbjct: 64  RSGNRSAKAAWLLRELGFKNVYLLDGGYKEWSAAG 98

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions. Length = 100

>gnl|CDD|216005 pfam00581, Rhodanese, Rhodanese-like domain

 Score = 67.9 bits (166), Expect = 5e-16
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 12/108 (11%)

Query: 10  VDTAKDLLSSGH-RFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCS 68
            +  K LL +     +DVR+ EE+ + H+ GA+N+P    + +   K    L ++     
Sbjct: 2   AEELKALLEADDVVLIDVRSPEEYAKGHIPGAVNIPLSLPSLD---KLESELEELGKKLD 58

Query: 69  KEDHIIVVCNSGGRALRACVDLRNAHVTK--------LEGGYSAWVDE 108
           K+  I+V C SG R+ +A   L    +          L+GG+ AW  E
Sbjct: 59  KDKTIVVYCASGNRSGQAAALLLALILKALGYKNVYVLDGGFEAWKAE 106

Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases. Length = 106

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score = 61.6 bits (150), Expect = 3e-12
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 17/115 (14%)

Query: 7   SVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVP--YLFITQEGRVKNPEFLTQVA 64
            +    A+   + G   +DVR   E       GAL +P  +L +  E  +  P+      
Sbjct: 4   EISPAEARARAAQGAVLIDVREAHERASGQAEGALRIPRGFLELRIETHL--PD------ 55

Query: 65  SVCSKEDHIIVVCNSGGRALRACVDLRN---AHVTKLEGGYSAWVDEGVAGDKPL 116
               ++  I+++C SG R+  A   LR      V  + GG+SAW D G+  ++P 
Sbjct: 56  ----RDREIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERPR 106

Length = 376

>gnl|CDD|223680 COG0607, PspE, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

 Score = 49.2 bits (117), Expect = 1e-08
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 14/91 (15%)

Query: 23  FLDVRTTEEFNESHV-HGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGG 81
            LDVR  EE+   H+   A+N+P   +             +       +D I+V C SG 
Sbjct: 23  LLDVREPEEYERGHIPGAAINIPLSELKAA----------ENLLELPDDDPIVVYCASGV 72

Query: 82  RALRACVDLRNA---HVTKLEGGYSAWVDEG 109
           R+  A   L+ A   +V  L+GG  AW   G
Sbjct: 73  RSAAAAAALKLAGFTNVYNLDGGIDAWKGAG 103

Length = 110

>gnl|CDD|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB; Validated

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 13/94 (13%)

Query: 17  LSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVV 76
           L  G   +DVR   EF    + GA NVP L   +EG   NP  +       S  D ++V 
Sbjct: 271 LPDGVTLIDVREPSEFAAYSIPGAHNVP-LSAIREG--ANPPSV-------SAGDEVVVY 320

Query: 77  CNSGGRALRACVDLRNAHVT---KLEGGYSAWVD 107
           C +G R+ +A   L  A  T    L+GG   W+D
Sbjct: 321 CAAGVRSAQAVAILERAGYTGMSSLDGGIEGWLD 354

Length = 355

>gnl|CDD|238780 cd01522, RHOD_1, Member of the Rhodanese Homology Domain superfamily, subgroup 1

 Score = 44.6 bits (106), Expect = 7e-07
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 12/96 (12%)

Query: 22  RFLDVRTTEEFNE-SHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSG 80
             +DVRT  E+     V  A++V +          NP FL ++     K+  ++++C SG
Sbjct: 17  VLVDVRTEAEWKFVGGVPDAVHVAWQ--VYPDMEINPNFLAELEEKVGKDRPVLLLCRSG 74

Query: 81  GRALRACVDLRNAHVTKLEGGYS-AW-VDEGVAGDK 114
            R++ A      A       G++  + V EG  GD 
Sbjct: 75  NRSIAAAEAAAQA-------GFTNVYNVLEGFEGDL 103

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins. Length = 117

>gnl|CDD|238781 cd01523, RHOD_Lact_B, Member of the Rhodanese Homology Domain superfamily

 Score = 44.0 bits (104), Expect = 8e-07
 Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 9/101 (8%)

Query: 11  DTAKDLLSSGHRF-LDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSK 69
           D    LL+    F LDVR   ++    + G  N PY     +      + L Q+      
Sbjct: 5   DLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDFLEIEEDILDQL----PD 60

Query: 70  EDHIIVVCNSGGRALRACVDLRNAH---VTKLEGGYSAWVD 107
           +  + V+C   G + +   +L       V  L GG  AW +
Sbjct: 61  DQEVTVICAKEG-SSQFVAELLAERGYDVDYLAGGMKAWSE 100

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain. Length = 100

>gnl|CDD|234132 TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine synthase

 Score = 44.1 bits (105), Expect = 3e-06
 Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 27/113 (23%)

Query: 19  SGHRFLDVRTTEEFNESHVHGALNVPYLF-----------ITQEGRV------------K 55
           +    +DVR+  EF E H+ GA+N+P L              Q G               
Sbjct: 1   AFDPLIDVRSPAEFAEGHLPGAINLP-LLNDEERAEVGTLYKQVGPFAAIKLGLALVSPN 59

Query: 56  NPEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAW 105
               + Q  +        ++ C  GG    +   L       V +LEGGY A+
Sbjct: 60  LAAHVEQWRAFADGPPQPLLYCWRGGMRSGSLAWLLAQIGFRVPRLEGGYKAY 112

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene [Protein synthesis, tRNA and rRNA base modification]. Length = 311

>gnl|CDD|238786 cd01528, RHOD_2, Member of the Rhodanese Homology Domain superfamily, subgroup 2

 Score = 42.4 bits (100), Expect = 3e-06
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%)

Query: 23  FLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGR 82
            +DVR  EE   + + G L++P   I        PE   ++ S  + +  I+V+C+ GGR
Sbjct: 20  LIDVREPEELEIAFLPGFLHLPMSEI--------PERSKELDSD-NPDKDIVVLCHHGGR 70

Query: 83  ALRACVDLRNA---HVTKLEGGYSAW 105
           +++    L      +V  L+GG  AW
Sbjct: 71  SMQVAQWLLRQGFENVYNLQGGIDAW 96

Subgroup 2 includes uncharacterized putative rhodanese-related domains. Length = 101

>gnl|CDD|238784 cd01526, RHOD_ThiF, Member of the Rhodanese Homology Domain superfamily

 Score = 41.9 bits (99), Expect = 7e-06
 Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 12/109 (11%)

Query: 8   VGVDTAKDLLSSG--HRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLT--QV 63
           V V   K++L +G  H  LDVR    F    +  A+N+P      E   K  E  +  ++
Sbjct: 10  VSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPL----SELLSKAAELKSLQEL 65

Query: 64  ASVCSKEDHIIVVCNSGGRALRACVDLRN----AHVTKLEGGYSAWVDE 108
                K+  I VVC  G  +  A   L+       V  + GG  AW D+
Sbjct: 66  PLDNDKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADK 114

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains. Length = 122

>gnl|CDD|238777 cd01519, RHOD_HSP67B2, Member of the Rhodanese Homology Domain superfamily

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 23/74 (31%)

Query: 25 DVRTTEEFNESHVHGALNVPY------LFITQE------GRVKNPEFLTQVASVCSKEDH 72
          DVR  EE     + GA+N+P       L +++E      G  K P          SK+  
Sbjct: 20 DVREPEELKTGKIPGAINIPLSSLPDALALSEEEFEKKYGFPK-P----------SKDKE 68

Query: 73 IIVVCNSGGRALRA 86
          +I  C +G R+  A
Sbjct: 69 LIFYCKAGVRSKAA 82

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized. Length = 106

>gnl|CDD|238726 cd01449, TST_Repeat_2, Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 24/116 (20%)

Query: 11  DTAKDLLSSGHR-FLDVRTTEEFN-ES----------HVHGALNVPY-LFITQEGRVKNP 57
           +     L SG    +D R+ E F  E           H+ GA+N+P+   + ++G  K+P
Sbjct: 4   EEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSP 63

Query: 58  EFLTQV--ASVCSKEDHIIVVCNSGGRALRACVD---LRNA---HVTKLEGGYSAW 105
           E L  +  A   + +  +IV C SG   + ACV    L      +V   +G +S W
Sbjct: 64  EELRALFAALGITPDKPVIVYCGSG---VTACVLLLALELLGYKNVRLYDGSWSEW 116

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue. Length = 118

>gnl|CDD|238787 cd01529, 4RHOD_Repeats, Member of the Rhodanese Homology Domain superfamily

 Score = 39.2 bits (91), Expect = 6e-05
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 9/90 (10%)

Query: 20  GHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNS 79
           G   LDVR  +E+   H+ G  ++P   +    +        Q      +    ++ C+ 
Sbjct: 12  GTALLDVRAEDEYAAGHLPGKRSIPGAALVLRSQEL------QALEAPGRATRYVLTCDG 65

Query: 80  GGRALRACVDLRNA---HVTKLEGGYSAWV 106
              A  A  +L       V  L+GG SAWV
Sbjct: 66  SLLARFAAQELLALGGKPVALLDGGTSAWV 95

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats. Length = 96

>gnl|CDD|132026 TIGR02981, phageshock_pspE, phage shock operon rhodanese PspE

 Score = 38.5 bits (89), Expect = 9e-05
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 15/88 (17%)

Query: 17  LSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC-SKEDHIIV 75
           L +   ++DVR  E++ + H+ GA+N+P             E    +A+    K D + +
Sbjct: 15  LFAAEHWIDVRIPEQYQQEHIQGAINIPL-----------KEIKEHIATAVPDKNDTVKL 63

Query: 76  VCNSG---GRALRACVDLRNAHVTKLEG 100
            CN+G   G A    +D+   H     G
Sbjct: 64  YCNAGRQSGMAKDILLDMGYTHAENAGG 91

Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely. Length = 101

>gnl|CDD|238779 cd01521, RHOD_PspE2, Member of the Rhodanese Homology Domain superfamily

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 17/108 (15%)

Query: 10  VDTAKDLLSSGHRF--LDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC 67
            D A  L +    F  +DVR+ E +   HV GA+N+P+  I +    K            
Sbjct: 13  WDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREICENATAKLD---------- 62

Query: 68  SKEDHIIVVCNSGG--RALRACVDLRNA--HVTKLEGGYSAWVDEGVA 111
            KE   +V C+  G   A +A + L      V ++ GG   W  EG A
Sbjct: 63  -KEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLDWWKREGYA 109

This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins. Length = 110

>gnl|CDD|180967 PRK07411, PRK07411, hypothetical protein; Validated

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 14/101 (13%)

Query: 14  KDLLSSGHR---FLDVRTTEEFNESHVHGALNVPYLFITQ-EGRVKNPEFLTQVASVCSK 69
           K LL SG      +DVR   E+  + + G++ VP   I    G  K  E L         
Sbjct: 290 KALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGPGVEKVKELL--------N 341

Query: 70  EDHIIVVCNSGGRALRACVDLRNAHV--TKLEGGYSAWVDE 108
              +I  C  GGR+ +A   L+ A +  T ++GG +AW  E
Sbjct: 342 GHRLIAHCKMGGRSAKALGILKEAGIEGTNVKGGITAWSRE 382

Length = 390

>gnl|CDD|238724 cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 17/111 (15%)

Query: 8   VGVDTAKDLL-SSGHRFLDVRTTEEF-NESHVHGALNVPY----LFITQEGRVKNPEFLT 61
           +  + A+ LL S G   +DVR   E      + GA + P      +   +     P F  
Sbjct: 1   LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWADPDSPYHKPAF-- 58

Query: 62  QVASVCSKEDHIIVVCNSGGRALRACVDLRN---AHVTKLEGGYSAWVDEG 109
                 +++   +  C SG R+  A   L++     V  +EGG+  W + G
Sbjct: 59  ------AEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins. Length = 103

>gnl|CDD|236982 PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 30/122 (24%), Positives = 44/122 (36%), Gaps = 34/122 (27%)

Query: 14  KDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQE---------------------- 51
           + L  +    +DVR+  EF E H+ GA+N+P L   +E                      
Sbjct: 9   RALFLNDTPLIDVRSPIEFAEGHIPGAINLP-LLNDEERAEVGTCYKQQGQFAAIALGHA 67

Query: 52  ---GRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALR---ACVDLRNA--HVTKLEGGYS 103
              G +         A         ++ C  GG  LR       L+ A   V +LEGGY 
Sbjct: 68  LVAGNIAA-HREEAWADFPRANPRGLLYCWRGG--LRSGSVQQWLKEAGIDVPRLEGGYK 124

Query: 104 AW 105
           A+
Sbjct: 125 AY 126

Length = 345

>gnl|CDD|238785 cd01527, RHOD_YgaP, Member of the Rhodanese Homology Domain superfamily

 Score = 36.7 bits (85), Expect = 5e-04
 Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 21/105 (20%)

Query: 7   SVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV 66
           ++  + A +LL+ G   +D+R  +E+    + GA  VP   +  EG              
Sbjct: 3   TISPNDACELLAQGAVLVDIREPDEYLRERIPGARLVPLSQLESEGLPL----------- 51

Query: 67  CSKEDHIIVVCNSGGRA------LRACVDLRNAHVTKLEGGYSAW 105
               + II  C SG R       L A      A+V  LEGG  AW
Sbjct: 52  -VGANAIIFHCRSGMRTQQNAERLAAISAGE-AYV--LEGGLDAW 92

This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases. Length = 99

>gnl|CDD|182356 PRK10287, PRK10287, thiosulfate:cyanide sulfurtransferase; Provisional

 Score = 36.4 bits (84), Expect = 7e-04
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 15/82 (18%)

Query: 23  FLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC-SKEDHIIVVCNSG- 80
           ++DVR  E++ + HV GA+N+P             E   ++A+    K D + + CN+G 
Sbjct: 23  WIDVRVPEQYQQEHVQGAINIPL-----------KEVKERIATAVPDKNDTVKLYCNAGR 71

Query: 81  --GRALRACVDLRNAHVTKLEG 100
             G+A     ++   H     G
Sbjct: 72  QSGQAKEILSEMGYTHAENAGG 93

Length = 104

>gnl|CDD|238723 cd01446, DSP_MapKP, N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 13 AKDLLSSGHRFL--DVRTTEEFNESHVHGALNV 43
          A  L   G R L  D R   E++ SH+ GA+NV
Sbjct: 8  AALLREGGERLLLLDCRPFLEYSSSHIRGAVNV 40

This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain. Length = 132

>gnl|CDD|238778 cd01520, RHOD_YbbB, Member of the Rhodanese Homology Domain superfamily

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 26/109 (23%)

Query: 23  FLDVRTTEEFNESHVHGALNVPYL----------FITQEGR------------VKNPEFL 60
            +DVR+ +EF E H+ GA+N+P L             Q+GR             K    L
Sbjct: 16  LIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRIL 75

Query: 61  TQVASVCSKEDHIIVV-CNSGG-RALRAC--VDLRNAHVTKLEGGYSAW 105
            +      + D  +++ C  GG R+      ++     V  LEGGY A+
Sbjct: 76  NEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYKAY 124

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB. Length = 128

>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 19/102 (18%)

Query: 14  KDLLSSGHRF--LDVRTTEEFNESHVHGALNVPY-LFITQEGRVKNPEFLTQVASVCSKE 70
           K+ L SG +   +DVR   E++  H+ GA  +P    ++ E   K P+            
Sbjct: 295 KEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSEILSGEALAKLPQ------------ 342

Query: 71  DHIIVV-CNSGGRALRACVDLRNA---HVTKLEGGYSAWVDE 108
           D  IV+ C +G R+  A   L+ A       L+GG  AW  +
Sbjct: 343 DRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQ 384

Length = 392

>gnl|CDD|238782 cd01524, RHOD_Pyr_redox, Member of the Rhodanese Homology Domain superfamily

 Score = 34.2 bits (79), Expect = 0.003
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 14/85 (16%)

Query: 23  FLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGR 82
            +DVRT +EF + H+ GA+N+P      E R    + L ++     K+  IIV C  G R
Sbjct: 16  LIDVRTPQEFEKGHIKGAINIP----LDELR----DRLNEL----PKDKEIIVYCAVGLR 63

Query: 83  ALRACVDLRNA--HVTKLEGGYSAW 105
              A   L      V  L+GGY  +
Sbjct: 64  GYIAARILTQNGFKVKNLDGGYKTY 88

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain. Length = 90

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
PLN02160	136	thiosulfate sulfurtransferase	99.93
cd01533	109	4RHOD_Repeat_2 Member of the Rhodanese Homology Do	99.92
PRK00162	108	glpE thiosulfate sulfurtransferase; Validated	99.91
KOG1530	136	consensus Rhodanese-related sulfurtransferase [Ino	99.91
cd01518	101	RHOD_YceA Member of the Rhodanese Homology Domain	99.91
cd01527	99	RHOD_YgaP Member of the Rhodanese Homology Domain	99.91
cd01519	106	RHOD_HSP67B2 Member of the Rhodanese Homology Doma	99.9
cd01521	110	RHOD_PspE2 Member of the Rhodanese Homology Domain	99.9
cd01523	100	RHOD_Lact_B Member of the Rhodanese Homology Domai	99.89
TIGR03865	162	PQQ_CXXCW PQQ-dependent catabolism-associated CXXC	99.89
cd01534	95	4RHOD_Repeat_3 Member of the Rhodanese Homology Do	99.89
cd01520	128	RHOD_YbbB Member of the Rhodanese Homology Domain	99.89
cd01528	101	RHOD_2 Member of the Rhodanese Homology Domain sup	99.88
cd01526	122	RHOD_ThiF Member of the Rhodanese Homology Domain	99.88
cd01524	90	RHOD_Pyr_redox Member of the Rhodanese Homology Do	99.87
cd01448	122	TST_Repeat_1 Thiosulfate sulfurtransferase (TST),	99.87
cd01447	103	Polysulfide_ST Polysulfide-sulfurtransferase - Rho	99.87
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.87
cd01522	117	RHOD_1 Member of the Rhodanese Homology Domain sup	99.87
cd01449	118	TST_Repeat_2 Thiosulfate sulfurtransferase (TST),	99.86
cd01444	96	GlpE_ST GlpE sulfurtransferase (ST) and homologs a	99.86
cd01530	121	Cdc25 Cdc25 phosphatases are members of the Rhodan	99.86
cd01525	105	RHOD_Kc Member of the Rhodanese Homology Domain su	99.86
smart00450	100	RHOD Rhodanese Homology Domain. An alpha beta fold	99.86
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.86
PF00581	113	Rhodanese: Rhodanese-like domain This Prosite entr	99.86
cd01535	145	4RHOD_Repeat_4 Member of the Rhodanese Homology Do	99.85
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	99.85
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.84
cd01445	138	TST_Repeats Thiosulfate sulfurtransferases (TST) c	99.84
cd01529	96	4RHOD_Repeats Member of the Rhodanese Homology Dom	99.84
cd01531	113	Acr2p Eukaryotic arsenate resistance proteins are	99.84
PRK01415	247	hypothetical protein; Validated	99.83
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.83
cd01443	113	Cdc25_Acr2p Cdc25 enzymes are members of the Rhoda	99.82
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	99.81
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.81
PRK05320	257	rhodanese superfamily protein; Provisional	99.81
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.81
cd01532	92	4RHOD_Repeat_1 Member of the Rhodanese Homology Do	99.81
cd00158	89	RHOD Rhodanese Homology Domain (RHOD); an alpha be	99.8
COG0607	110	PspE Rhodanese-related sulfurtransferase [Inorgani	99.79
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.79
TIGR02981	101	phageshock_pspE phage shock operon rhodanese PspE.	99.79
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.79
PRK10287	104	thiosulfate:cyanide sulfurtransferase; Provisional	99.78
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	99.77
PRK07411	390	hypothetical protein; Validated	99.77
cd01446	132	DSP_MapKP N-terminal regulatory rhodanese domain o	99.76
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	99.75
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	99.74
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	99.72
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	99.64
COG1054	308	Predicted sulfurtransferase [General function pred	99.54
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	99.51
KOG3772	325	consensus M-phase inducer phosphatase [Cell cycle	99.47
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	99.45
PRK01269	482	tRNA s(4)U8 sulfurtransferase; Provisional	99.43
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	99.24
COG5105	427	MIH1 Mitotic inducer, protein phosphatase [Cell di	98.97
COG2603	334	Predicted ATPase [General function prediction only	97.83
PF04273	110	DUF442: Putative phosphatase (DUF442); InterPro: I	97.24
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	97.15
KOG1093	725	consensus Predicted protein kinase (contains TBC a	97.06
TIGR01244	135	conserved hypothetical protein TIGR01244. No membe	97.02
KOG1717	343	consensus Dual specificity phosphatase [Defense me	96.67
KOG3636	669	consensus Uncharacterized conserved protein, conta	96.05
PF13350	164	Y_phosphatase3: Tyrosine phosphatase family; PDB:	95.74
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	93.47
PLN02727	986	NAD kinase	91.43
cd00127	139	DSPc Dual specificity phosphatases (DSP); Ser/Thr	90.34
smart00195	138	DSPc Dual specificity phosphatase, catalytic domai	89.9
COG3453	130	Uncharacterized protein conserved in bacteria [Fun	89.36
PF00782	133	DSPc: Dual specificity phosphatase, catalytic doma	89.04
PF05706	168	CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3)	88.83
COG2453	180	CDC14 Predicted protein-tyrosine phosphatase [Sign	86.9
PRK12361	547	hypothetical protein; Provisional	81.15
PRK11391	144	etp phosphotyrosine-protein phosphatase; Provision	80.56

>PLN02160 thiosulfate sulfurtransferase

Probab=99.93  E-value=2.4e-25  Score=143.27  Aligned_cols=115  Identities=49%  Similarity=0.795  Sum_probs=95.0

Q ss_pred             CCceeCHHHHHHhhhCCcEEEecCChhhhcccCCCCc--cccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCc
Q 041947            4 DVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGA--LNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGG   81 (126)
Q Consensus         4 ~~~~i~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~   81 (126)
                      .+..|+++++.+.+..+..|||+|++.||..||||||  +|+|+..+.....+.+..+...+...++++++||+||.+|.
T Consensus        13 ~~~~i~~~e~~~~~~~~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC~sG~   92 (136)
T PLN02160         13 EVVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGCQSGA   92 (136)
T ss_pred             eeeEeCHHHHHHHHhCCCEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEECCCcH
Confidence            4678999999999865678999999999999999999  89998554333344445555555554578899999999999


Q ss_pred             hHHHHHHHHHhc---CcceecccHHhHHhCCCCCCCCccc
Q 041947           82 RALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKPLEE  118 (126)
Q Consensus        82 ~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~~~~  118 (126)
                      ||..++..|...   +|+.|.||+.+|.++|+|+.+..++
T Consensus        93 RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~  132 (136)
T PLN02160         93 RSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEEEE  132 (136)
T ss_pred             HHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccccC
Confidence            999999999887   7999999999999999999877433

>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2

Probab=99.92  E-value=3.7e-24  Score=132.88  Aligned_cols=95  Identities=25%  Similarity=0.404  Sum_probs=79.9

Q ss_pred             CCceeCHHHHHHhhh-C-CcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh-cCCCCeEEEEeCCC
Q 041947            4 DVASVGVDTAKDLLS-S-GHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV-CSKEDHIIVVCNSG   80 (126)
Q Consensus         4 ~~~~i~~~~l~~~~~-~-~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivvyc~~g   80 (126)
                      .+..|+++++.+.+. + +.+|||+|++.+|..||||||+|+|+.           ++...+... .+++++||+||.+|
T Consensus         8 ~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~-----------~l~~~~~~l~~~~~~~ivv~C~~G   76 (109)
T cd01533           8 HTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGA-----------ELVLRVGELAPDPRTPIVVNCAGR   76 (109)
T ss_pred             cCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHH-----------HHHHHHHhcCCCCCCeEEEECCCC
Confidence            567899999999883 3 578999999999999999999999986           344444444 24678999999999


Q ss_pred             chHHHHHHHHHhc---C-cceecccHHhHHhCC
Q 041947           81 GRALRACVDLRNA---H-VTKLEGGYSAWVDEG  109 (126)
Q Consensus        81 ~~s~~~~~~l~~~---~-v~~l~gG~~~w~~~g  109 (126)
                      .+|..++..|...   + |+.+.||+.+|..+|
T Consensus        77 ~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g  109 (109)
T cd01533          77 TRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG  109 (109)
T ss_pred             chHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence            9999988888877   5 889999999999875

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.

>PRK00162 glpE thiosulfate sulfurtransferase; Validated

Probab=99.91  E-value=1.2e-23  Score=130.40  Aligned_cols=100  Identities=21%  Similarity=0.370  Sum_probs=87.1

Q ss_pred             CCceeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCch
Q 041947            4 DVASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGR   82 (126)
Q Consensus         4 ~~~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~   82 (126)
                      ....|+++++.+.+ ..+.+|||+|++.+|..||||||+|+|..           .+..++.. ++.+++|+|||.+|.+
T Consensus         3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~-----------~l~~~~~~-~~~~~~ivv~c~~g~~   70 (108)
T PRK00162          3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTND-----------SLGAFMRQ-ADFDTPVMVMCYHGNS   70 (108)
T ss_pred             CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHH-----------HHHHHHHh-cCCCCCEEEEeCCCCC
Confidence            46789999999998 56689999999999999999999999985           44455544 4788999999999999


Q ss_pred             HHHHHHHHHhc---CcceecccHHhHHhCCCCCCCC
Q 041947           83 ALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        83 s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      +..++..|...   +|+++.||+.+|..+++|++..
T Consensus        71 s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~~  106 (108)
T PRK00162         71 SQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVAS  106 (108)
T ss_pred             HHHHHHHHHHCCchheEEecCCHHHHHhcCCCccCC
Confidence            99988888888   7999999999999999998764

>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.91  E-value=9e-24  Score=131.71  Aligned_cols=111  Identities=41%  Similarity=0.650  Sum_probs=99.5

Q ss_pred             CCCceeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCC-CCeEEEEeCCC
Q 041947            3 GDVASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSK-EDHIIVVCNSG   80 (126)
Q Consensus         3 ~~~~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ivvyc~~g   80 (126)
                      .....++.++++.++ .++.++||||.+.||.+||||.++|||+......+.+.+++|...+....++ ++.|||+|.+|
T Consensus        20 ~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~SG   99 (136)
T KOG1530|consen   20 SNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCASG   99 (136)
T ss_pred             CCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEeccC
Confidence            345678889999999 5569999999999999999999999999888888888899999999998754 55899999999


Q ss_pred             chHHHHHHHHHhc---CcceecccHHhHHhCCCCCC
Q 041947           81 GRALRACVDLRNA---HVTKLEGGYSAWVDEGVAGD  113 (126)
Q Consensus        81 ~~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~  113 (126)
                      .|+..+...|...   +|.+|.|||.+|.+.++|..
T Consensus       100 ~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~  135 (136)
T KOG1530|consen  100 VRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK  135 (136)
T ss_pred             cchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence            9999999999998   99999999999999888753

>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily

Probab=99.91  E-value=4.5e-24  Score=130.78  Aligned_cols=93  Identities=24%  Similarity=0.364  Sum_probs=76.7

Q ss_pred             eeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh--cCCCCeEEEEeCCCchH
Q 041947            7 SVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV--CSKEDHIIVVCNSGGRA   83 (126)
Q Consensus         7 ~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivvyc~~g~~s   83 (126)
                      .|+++++.+++ +++.+|||||++.||..||||||+|+|+..+..        +...+...  .+++++|||||.+|.++
T Consensus         3 ~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~--------~~~~~~~~~~~~~~~~ivvyC~~G~rs   74 (101)
T cd01518           3 YLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFRE--------FPFWLDENLDLLKGKKVLMYCTGGIRC   74 (101)
T ss_pred             cCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHhH--------hHHHHHhhhhhcCCCEEEEECCCchhH
Confidence            58899999988 567899999999999999999999999975431        11122211  26889999999999999


Q ss_pred             HHHHHHHHhc---CcceecccHHhHHh
Q 041947           84 LRACVDLRNA---HVTKLEGGYSAWVD  107 (126)
Q Consensus        84 ~~~~~~l~~~---~v~~l~gG~~~w~~  107 (126)
                      ..++.+|..+   +|+.++||+.+|..
T Consensus        75 ~~a~~~L~~~G~~~v~~l~GG~~~W~~  101 (101)
T cd01518          75 EKASAYLKERGFKNVYQLKGGILKYLE  101 (101)
T ss_pred             HHHHHHHHHhCCcceeeechhHHHHhC
Confidence            9999998877   79999999999963

This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.

>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily

Probab=99.91  E-value=9.1e-24  Score=128.92  Aligned_cols=96  Identities=26%  Similarity=0.442  Sum_probs=81.8

Q ss_pred             CceeCHHHHHHhhhCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHH
Q 041947            5 VASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRAL   84 (126)
Q Consensus         5 ~~~i~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~   84 (126)
                      +..|+++++.+.+.++.+|||+|++.+|..+|||||+|+|+..+..           . ...++++++||+||.+|.++.
T Consensus         1 ~~~i~~~el~~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~-----------~-~~~~~~~~~iv~~c~~g~~s~   68 (99)
T cd01527           1 LTTISPNDACELLAQGAVLVDIREPDEYLRERIPGARLVPLSQLES-----------E-GLPLVGANAIIFHCRSGMRTQ   68 (99)
T ss_pred             CCccCHHHHHHHHHCCCEEEECCCHHHHHhCcCCCCEECChhHhcc-----------c-ccCCCCCCcEEEEeCCCchHH
Confidence            3578999999988555899999999999999999999999865431           1 112478899999999999999


Q ss_pred             HHHHHHHhc---CcceecccHHhHHhCCCCC
Q 041947           85 RACVDLRNA---HVTKLEGGYSAWVDEGVAG  112 (126)
Q Consensus        85 ~~~~~l~~~---~v~~l~gG~~~w~~~g~~~  112 (126)
                      .++..|.+.   +++++.||+.+|..+|+|+
T Consensus        69 ~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~   99 (99)
T cd01527          69 QNAERLAAISAGEAYVLEGGLDAWKAAGLPV   99 (99)
T ss_pred             HHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence            999999887   8999999999999998874

This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.

>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily

Probab=99.90  E-value=1.1e-23  Score=129.78  Aligned_cols=98  Identities=24%  Similarity=0.431  Sum_probs=82.2

Q ss_pred             CHHHHHHhhh--CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh-cCCCCeEEEEeCCCchHHH
Q 041947            9 GVDTAKDLLS--SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV-CSKEDHIIVVCNSGGRALR   85 (126)
Q Consensus         9 ~~~~l~~~~~--~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivvyc~~g~~s~~   85 (126)
                      +++++.++++  ++.+|||+|++.+|..||||||+|+|+..+.+......++|.+.+.+. ++++++||+||.+|.++..
T Consensus         2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~~   81 (106)
T cd01519           2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDALALSEEEFEKKYGFPKPSKDKELIFYCKAGVRSKA   81 (106)
T ss_pred             cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEEEECCCcHHHHH
Confidence            5778888775  468999999999999999999999999876554444556777777665 4678999999999999999


Q ss_pred             HHHHHHhc---CcceecccHHhHH
Q 041947           86 ACVDLRNA---HVTKLEGGYSAWV  106 (126)
Q Consensus        86 ~~~~l~~~---~v~~l~gG~~~w~  106 (126)
                      ++..|...   +|++|.||+.+|.
T Consensus        82 ~~~~l~~~G~~~v~~~~Gg~~~W~  105 (106)
T cd01519          82 AAELARSLGYENVGNYPGSWLDWA  105 (106)
T ss_pred             HHHHHHHcCCccceecCCcHHHHc
Confidence            88888777   7999999999996

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.

>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily

Probab=99.90  E-value=6e-23  Score=127.69  Aligned_cols=96  Identities=28%  Similarity=0.436  Sum_probs=80.1

Q ss_pred             ceeCHHHHHHhh-h--CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCc-
Q 041947            6 ASVGVDTAKDLL-S--SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGG-   81 (126)
Q Consensus         6 ~~i~~~~l~~~~-~--~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~-   81 (126)
                      ..|+++++.+++ +  ++.+|||+|++.+|..||||||+|+|...+.           .+....++++++||+||.+|. 
T Consensus         8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~-----------~~~~~~i~~~~~vvvyc~~g~~   76 (110)
T cd01521           8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREIC-----------ENATAKLDKEKLFVVYCDGPGC   76 (110)
T ss_pred             eecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhh-----------hHhhhcCCCCCeEEEEECCCCC
Confidence            468999999998 3  4589999999999999999999999986432           222344688999999999874 


Q ss_pred             -hHHHHHHHHHhc--CcceecccHHhHHhCCCCC
Q 041947           82 -RALRACVDLRNA--HVTKLEGGYSAWVDEGVAG  112 (126)
Q Consensus        82 -~s~~~~~~l~~~--~v~~l~gG~~~w~~~g~~~  112 (126)
                       ++..++..|..+  ++++++||+.+|..+|+|+
T Consensus        77 ~~s~~~a~~l~~~G~~v~~l~GG~~~W~~~g~~~  110 (110)
T cd01521          77 NGATKAALKLAELGFPVKEMIGGLDWWKREGYAT  110 (110)
T ss_pred             chHHHHHHHHHHcCCeEEEecCCHHHHHHCCCCC
Confidence             788888888877  8899999999999999874

This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.

>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily

Probab=99.89  E-value=1.1e-22  Score=124.30  Aligned_cols=92  Identities=22%  Similarity=0.376  Sum_probs=76.0

Q ss_pred             eCHHHHHHhh--hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHH---HHHHHhhcCCCCeEEEEeCCCch
Q 041947            8 VGVDTAKDLL--SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEF---LTQVASVCSKEDHIIVVCNSGGR   82 (126)
Q Consensus         8 i~~~~l~~~~--~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ivvyc~~g~~   82 (126)
                      |+++++.+++  +.+.+|||+|++.||..||||||+|+|+..+..       .+   .....+.++++++||+||.+|.+
T Consensus         1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~-------~~~~~~~~~~~~~~~~~~ivv~C~~G~r   73 (100)
T cd01523           1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYF-------DFLEIEEDILDQLPDDQEVTVICAKEGS   73 (100)
T ss_pred             CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchH-------HHHHhhHHHHhhCCCCCeEEEEcCCCCc
Confidence            6789999988  356899999999999999999999999865431       11   11223345788999999999999


Q ss_pred             HHHHHHHHHhc--CcceecccHHhHH
Q 041947           83 ALRACVDLRNA--HVTKLEGGYSAWV  106 (126)
Q Consensus        83 s~~~~~~l~~~--~v~~l~gG~~~w~  106 (126)
                      |..++..|.+.  +++.+.||+.+|.
T Consensus        74 s~~aa~~L~~~G~~~~~l~GG~~~W~   99 (100)
T cd01523          74 SQFVAELLAERGYDVDYLAGGMKAWS   99 (100)
T ss_pred             HHHHHHHHHHcCceeEEeCCcHHhhc
Confidence            99999999888  8889999999995

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.

>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein

Probab=99.89  E-value=2.5e-22  Score=132.69  Aligned_cols=109  Identities=16%  Similarity=0.202  Sum_probs=81.3

Q ss_pred             CCceeCHHHHHHhh-hCCcEEEecCChh----hhccc---------CCCCccccccccccccCCCCChHHHHHHHhh--c
Q 041947            4 DVASVGVDTAKDLL-SSGHRFLDVRTTE----EFNES---------HVHGALNVPYLFITQEGRVKNPEFLTQVASV--C   67 (126)
Q Consensus         4 ~~~~i~~~~l~~~~-~~~~~iiDvR~~~----e~~~g---------hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~--~   67 (126)
                      .+..|+++++.+++ +++.+|||+|+..    +|..|         |||||+|+|+..+..-.......+...+...  .
T Consensus        34 ~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l~~~~~~~~~~~l~~~~~~  113 (162)
T TIGR03865        34 GARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNLAPAWQAYFRRGLERATGG  113 (162)
T ss_pred             CccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCCCCCchhHHHHHHHHHhcCC
Confidence            56789999999999 5678999999865    45444         9999999996322110011112355555443  2


Q ss_pred             CCCCeEEEEeCCCc-hHHHHHHHHHhc---CcceecccHHhHHhCCCCC
Q 041947           68 SKEDHIIVVCNSGG-RALRACVDLRNA---HVTKLEGGYSAWVDEGVAG  112 (126)
Q Consensus        68 ~~~~~ivvyc~~g~-~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~  112 (126)
                      +++++||+||.+|. +|..+++.|.++   +|++|+||+.+|+.+|+|+
T Consensus       114 ~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv  162 (162)
T TIGR03865       114 DKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL  162 (162)
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence            68899999999987 677777777777   8999999999999999985

Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.

>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3

Probab=99.89  E-value=1.3e-22  Score=123.02  Aligned_cols=88  Identities=24%  Similarity=0.295  Sum_probs=72.4

Q ss_pred             eCHHHHHHhh-hC--CcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc-CCCCeEEEEeCCCchH
Q 041947            8 VGVDTAKDLL-SS--GHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC-SKEDHIIVVCNSGGRA   83 (126)
Q Consensus         8 i~~~~l~~~~-~~--~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ivvyc~~g~~s   83 (126)
                      |+++++.+++ ..  +.++||+|++.||..||||||+|+|...+           ........ .++++||+||.+|.++
T Consensus         1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~~l-----------~~~~~~~~~~~~~~iv~~c~~G~rs   69 (95)
T cd01534           1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQL-----------VQETDHFAPVRGARIVLADDDGVRA   69 (95)
T ss_pred             CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHHHH-----------HHHHHHhcccCCCeEEEECCCCChH
Confidence            6889999998 32  57899999999999999999999998633           22323332 2467899999999999


Q ss_pred             HHHHHHHHhc--CcceecccHHhHH
Q 041947           84 LRACVDLRNA--HVTKLEGGYSAWV  106 (126)
Q Consensus        84 ~~~~~~l~~~--~v~~l~gG~~~w~  106 (126)
                      ..++.+|...  +|++++||+.+|.
T Consensus        70 ~~aa~~L~~~G~~v~~l~GG~~~W~   94 (95)
T cd01534          70 DMTASWLAQMGWEVYVLEGGLAAAL   94 (95)
T ss_pred             HHHHHHHHHcCCEEEEecCcHHHhc
Confidence            9999999777  8889999999996

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.

>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily

Probab=99.89  E-value=1.4e-22  Score=129.19  Aligned_cols=100  Identities=25%  Similarity=0.427  Sum_probs=76.2

Q ss_pred             eCHHHHHHhhhCCcEEEecCChhhhcccCCCCccccccccccccCC-------------------CCC---hHHHHHHH-
Q 041947            8 VGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGR-------------------VKN---PEFLTQVA-   64 (126)
Q Consensus         8 i~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~-------------------~~~---~~~~~~~~-   64 (126)
                      |+++++.+++.++.+|||||++.||..||||||+|||+..+.....                   +..   +++...+. 
T Consensus         1 ~s~~el~~~l~~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (128)
T cd01520           1 ITAEDLLALRKADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEAWE   80 (128)
T ss_pred             CCHHHHHHHHhcCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            6889999998777899999999999999999999999964321100                   000   12222222 


Q ss_pred             hhcCCCCeEEEEeC-CCchHHHHHHHHHhc--CcceecccHHhHHh
Q 041947           65 SVCSKEDHIIVVCN-SGGRALRACVDLRNA--HVTKLEGGYSAWVD  107 (126)
Q Consensus        65 ~~~~~~~~ivvyc~-~g~~s~~~~~~l~~~--~v~~l~gG~~~w~~  107 (126)
                      ..++++++||+||. +|.+|..+++.|..+  +|++++||+.+|+.
T Consensus        81 ~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~aw~~  126 (128)
T cd01520          81 ARLERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYKAYRK  126 (128)
T ss_pred             hccCCCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHHHHHh
Confidence            24688999999997 688999888666666  89999999999974

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.

>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2

Probab=99.88  E-value=3.4e-22  Score=122.40  Aligned_cols=91  Identities=29%  Similarity=0.493  Sum_probs=74.8

Q ss_pred             eCHHHHHHhhh-C--CcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHH
Q 041947            8 VGVDTAKDLLS-S--GHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRAL   84 (126)
Q Consensus         8 i~~~~l~~~~~-~--~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~   84 (126)
                      |+++++.+++. +  +.+|||+|+..+|..+|||||+|+|+..+.        ++...+... +++++||+||.+|.+|.
T Consensus         2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~--------~~~~~~~~~-~~~~~vv~~c~~g~rs~   72 (101)
T cd01528           2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMSEIP--------ERSKELDSD-NPDKDIVVLCHHGGRSM   72 (101)
T ss_pred             CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHHHHH--------HHHHHhccc-CCCCeEEEEeCCCchHH
Confidence            78899999993 2  579999999999999999999999986442        122222211 45889999999999999


Q ss_pred             HHHHHHHhc---CcceecccHHhHHh
Q 041947           85 RACVDLRNA---HVTKLEGGYSAWVD  107 (126)
Q Consensus        85 ~~~~~l~~~---~v~~l~gG~~~w~~  107 (126)
                      .++.+|.+.   +|+++.||+.+|.+
T Consensus        73 ~~~~~l~~~G~~~v~~l~GG~~~w~~   98 (101)
T cd01528          73 QVAQWLLRQGFENVYNLQGGIDAWSL   98 (101)
T ss_pred             HHHHHHHHcCCccEEEecCCHHHHhh
Confidence            999999988   79999999999975

Subgroup 2 includes uncharacterized putative rhodanese-related domains.

>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=4.5e-22  Score=125.85  Aligned_cols=105  Identities=28%  Similarity=0.435  Sum_probs=82.9

Q ss_pred             CCCceeCHHHHHHhh-h-CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHH-H-HHhhcCCCCeEEEEeC
Q 041947            3 GDVASVGVDTAKDLL-S-SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLT-Q-VASVCSKEDHIIVVCN   78 (126)
Q Consensus         3 ~~~~~i~~~~l~~~~-~-~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~ivvyc~   78 (126)
                      .+...|+++++.+++ . .+.+|||+|++.+|..||||||+|+|+..+...    ...+.. + ..+.++++++||+||.
T Consensus         5 ~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~----~~~~~~~~~~~~~~~~~~~ivv~C~   80 (122)
T cd01526           5 SPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSK----AAELKSLQELPLDNDKDSPIYVVCR   80 (122)
T ss_pred             CcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhh----hhhhhhhhhcccccCCCCcEEEECC
Confidence            456789999999988 3 578999999999999999999999999755321    001111 1 1223478899999999


Q ss_pred             CCchHHHHHHHHHhc----CcceecccHHhHHhCCCC
Q 041947           79 SGGRALRACVDLRNA----HVTKLEGGYSAWVDEGVA  111 (126)
Q Consensus        79 ~g~~s~~~~~~l~~~----~v~~l~gG~~~w~~~g~~  111 (126)
                      +|.++..++..|...    +|+.+.||+.+|..+..+
T Consensus        81 ~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~  117 (122)
T cd01526          81 RGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDP  117 (122)
T ss_pred             CCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCc
Confidence            999999999988887    688999999999987554

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.

>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily

Probab=99.87  E-value=6.5e-22  Score=118.85  Aligned_cols=87  Identities=31%  Similarity=0.539  Sum_probs=74.7

Q ss_pred             eCHHHHHHhhhCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHHHHH
Q 041947            8 VGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRAC   87 (126)
Q Consensus         8 i~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~   87 (126)
                      ++++++.+++.++.++||+|+..+|..||||||+|+|...           +..++.. ++++++||+||.+|.++..++
T Consensus         1 ~~~~e~~~~~~~~~~iiD~R~~~~~~~~hipgA~~ip~~~-----------~~~~~~~-~~~~~~vvl~c~~g~~a~~~a   68 (90)
T cd01524           1 VQWHELDNYRADGVTLIDVRTPQEFEKGHIKGAINIPLDE-----------LRDRLNE-LPKDKEIIVYCAVGLRGYIAA   68 (90)
T ss_pred             CCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCCEeCCHHH-----------HHHHHHh-cCCCCcEEEEcCCChhHHHHH
Confidence            4788999988777899999999999999999999999853           3344433 478899999999999999988


Q ss_pred             HHHHhc--CcceecccHHhHH
Q 041947           88 VDLRNA--HVTKLEGGYSAWV  106 (126)
Q Consensus        88 ~~l~~~--~v~~l~gG~~~w~  106 (126)
                      ..|.+.  ++++++||+.+|+
T Consensus        69 ~~L~~~G~~v~~l~GG~~~w~   89 (90)
T cd01524          69 RILTQNGFKVKNLDGGYKTYS   89 (90)
T ss_pred             HHHHHCCCCEEEecCCHHHhc
Confidence            888877  7999999999996

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.

>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain

Probab=99.87  E-value=7.9e-22  Score=124.50  Aligned_cols=102  Identities=31%  Similarity=0.396  Sum_probs=81.7

Q ss_pred             eCHHHHHHhh-hCCcEEEecCCh-------hhhcccCCCCcccccccccccc-----CCCCC-hHHHHHHHhh-cCCCCe
Q 041947            8 VGVDTAKDLL-SSGHRFLDVRTT-------EEFNESHVHGALNVPYLFITQE-----GRVKN-PEFLTQVASV-CSKEDH   72 (126)
Q Consensus         8 i~~~~l~~~~-~~~~~iiDvR~~-------~e~~~ghI~ga~~i~~~~~~~~-----~~~~~-~~~~~~~~~~-~~~~~~   72 (126)
                      |+++++.+.+ +.+.+|||+|++       .+|..||||||+|+|+..+...     +.+.+ +++.+.+... ++++++
T Consensus         2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (122)
T cd01448           2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISNDDT   81 (122)
T ss_pred             cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Confidence            6889999998 557899999999       9999999999999998766432     22323 4556655544 678999


Q ss_pred             EEEEeCC-CchHHHHHHHHHhc---CcceecccHHhHHhCC
Q 041947           73 IIVVCNS-GGRALRACVDLRNA---HVTKLEGGYSAWVDEG  109 (126)
Q Consensus        73 ivvyc~~-g~~s~~~~~~l~~~---~v~~l~gG~~~w~~~g  109 (126)
                      ||+||++ +.++..++..|...   +|++|+||+.+|..+|
T Consensus        82 vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g  122 (122)
T cd01448          82 VVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG  122 (122)
T ss_pred             EEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence            9999998 47888877777776   7999999999998764

TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.

>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain

Probab=99.87  E-value=7.2e-22  Score=121.01  Aligned_cols=98  Identities=24%  Similarity=0.474  Sum_probs=74.9

Q ss_pred             eCHHHHHHhh-hCCcEEEecCChhhh-cccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHHH
Q 041947            8 VGVDTAKDLL-SSGHRFLDVRTTEEF-NESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALR   85 (126)
Q Consensus         8 i~~~~l~~~~-~~~~~iiDvR~~~e~-~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~~   85 (126)
                      |+++++.+.+ +++.+|||+|++.+| ..||||||+|+|...+..... ....+   ....++++++|||||.+|.++..
T Consensus         1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~~-~~~~~---~~~~~~~~~~ivv~c~~g~~s~~   76 (103)
T cd01447           1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWAD-PDSPY---HKPAFAEDKPFVFYCASGWRSAL   76 (103)
T ss_pred             CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhhhcC-ccccc---cccCCCCCCeEEEEcCCCCcHHH
Confidence            5789999888 467899999999998 579999999999864421100 00000   01125788999999999999998


Q ss_pred             HHHHHHhc---CcceecccHHhHHhCC
Q 041947           86 ACVDLRNA---HVTKLEGGYSAWVDEG  109 (126)
Q Consensus        86 ~~~~l~~~---~v~~l~gG~~~w~~~g  109 (126)
                      +++.|...   +|+.|+||+.+|..+|
T Consensus        77 ~~~~l~~~G~~~v~~l~Gg~~~w~~~g  103 (103)
T cd01447          77 AGKTLQDMGLKPVYNIEGGFKDWKEAG  103 (103)
T ss_pred             HHHHHHHcChHHhEeecCcHHHHhhcC
Confidence            88888777   7999999999998764

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.87  E-value=1.3e-21  Score=139.48  Aligned_cols=110  Identities=16%  Similarity=0.274  Sum_probs=87.0

Q ss_pred             ceeCHHHHHHhh-hCCcEEEecCC----------hhhhcccCCCCccccccccccccC-----C-CCChHHHHHHHhh-c
Q 041947            6 ASVGVDTAKDLL-SSGHRFLDVRT----------TEEFNESHVHGALNVPYLFITQEG-----R-VKNPEFLTQVASV-C   67 (126)
Q Consensus         6 ~~i~~~~l~~~~-~~~~~iiDvR~----------~~e~~~ghI~ga~~i~~~~~~~~~-----~-~~~~~~~~~~~~~-~   67 (126)
                      ..++++++.+++ .++.+|||+|+          +.+|..||||||+|+++..+....     . ...+.|...+... +
T Consensus         5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi   84 (281)
T PRK11493          5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELGV   84 (281)
T ss_pred             cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence            358899999999 66789999996          678999999999999987554321     1 2345677777776 7


Q ss_pred             CCCCeEEEEeCCCchHHHHH-HHHHhc---CcceecccHHhHHhCCCCCCCC
Q 041947           68 SKEDHIIVVCNSGGRALRAC-VDLRNA---HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        68 ~~~~~ivvyc~~g~~s~~~~-~~l~~~---~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      +++++||+||.++.+++..+ +.|...   +|++|+||+.+|.++|+|++..
T Consensus        85 ~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~  136 (281)
T PRK11493         85 NQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEG  136 (281)
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCC
Confidence            89999999999877654444 445444   7999999999999999998876

>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1

Probab=99.87  E-value=9.5e-22  Score=123.57  Aligned_cols=99  Identities=25%  Similarity=0.412  Sum_probs=82.3

Q ss_pred             eCHHHHHHhh-h-CCcEEEecCChhhhc-ccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHH
Q 041947            8 VGVDTAKDLL-S-SGHRFLDVRTTEEFN-ESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRAL   84 (126)
Q Consensus         8 i~~~~l~~~~-~-~~~~iiDvR~~~e~~-~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~   84 (126)
                      |+++++.+++ . ++.+|||+|++.+|. .||||||+|+|...+...  .....+..++...++++++||+||.+|.++.
T Consensus         1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~--~~~~~~~~~l~~~~~~~~~ivv~C~~G~rs~   78 (117)
T cd01522           1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDM--EINPNFLAELEEKVGKDRPVLLLCRSGNRSI   78 (117)
T ss_pred             CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhcccc--ccCHHHHHHHHhhCCCCCeEEEEcCCCccHH
Confidence            6889999999 4 578999999999999 999999999998765421  1123566666665678899999999999999


Q ss_pred             HHHHHHHhc---CcceecccHHhHHhC
Q 041947           85 RACVDLRNA---HVTKLEGGYSAWVDE  108 (126)
Q Consensus        85 ~~~~~l~~~---~v~~l~gG~~~w~~~  108 (126)
                      .++..|...   +++.+.||+.+|+..
T Consensus        79 ~aa~~L~~~G~~~v~~l~gG~~~~~~~  105 (117)
T cd01522          79 AAAEAAAQAGFTNVYNVLEGFEGDLDA  105 (117)
T ss_pred             HHHHHHHHCCCCeEEECcCceecCCCC
Confidence            999999888   799999999999763

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.

>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

Probab=99.86  E-value=1.4e-21  Score=122.63  Aligned_cols=99  Identities=28%  Similarity=0.481  Sum_probs=79.2

Q ss_pred             eCHHHHHHhh-hCCcEEEecCChhhhcc-----------cCCCCcccccccccccc-CCCC-ChHHHHHHHhh-cCCCCe
Q 041947            8 VGVDTAKDLL-SSGHRFLDVRTTEEFNE-----------SHVHGALNVPYLFITQE-GRVK-NPEFLTQVASV-CSKEDH   72 (126)
Q Consensus         8 i~~~~l~~~~-~~~~~iiDvR~~~e~~~-----------ghI~ga~~i~~~~~~~~-~~~~-~~~~~~~~~~~-~~~~~~   72 (126)
                      ++++++.+++ ..+.+|||+|++.+|..           ||||||+|+|+..+... +.++ .+.+...+... ++++++
T Consensus         1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (118)
T cd01449           1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITPDKP   80 (118)
T ss_pred             CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCCCC
Confidence            5788999888 45689999999999987           99999999999765432 1222 24455555554 578999


Q ss_pred             EEEEeCCCchHHHHHHHHHhc---CcceecccHHhHH
Q 041947           73 IIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWV  106 (126)
Q Consensus        73 ivvyc~~g~~s~~~~~~l~~~---~v~~l~gG~~~w~  106 (126)
                      ||+||++|.++..++..|..+   ++++|+||+.+|.
T Consensus        81 iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~  117 (118)
T cd01449          81 VIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWG  117 (118)
T ss_pred             EEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhc
Confidence            999999999999988888777   7999999999996

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.

>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily

Probab=99.86  E-value=2.2e-21  Score=117.46  Aligned_cols=88  Identities=26%  Similarity=0.509  Sum_probs=75.7

Q ss_pred             eeCHHHHHHhh-h-CCcEEEecCChhhhcc--cCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCch
Q 041947            7 SVGVDTAKDLL-S-SGHRFLDVRTTEEFNE--SHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGR   82 (126)
Q Consensus         7 ~i~~~~l~~~~-~-~~~~iiDvR~~~e~~~--ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~   82 (126)
                      .|+++++.+++ + .+.+|||+|++.+|..  ||||||+|+|+..           +..++.. ++++++|||||.+|.+
T Consensus         1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~-----------~~~~~~~-~~~~~~ivv~c~~g~~   68 (96)
T cd01444           1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDS-----------LDDWLGD-LDRDRPVVVYCYHGNS   68 (96)
T ss_pred             CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHH-----------HHHHHhh-cCCCCCEEEEeCCCCh
Confidence            37889999988 3 5689999999999999  9999999999963           3344433 4789999999999999


Q ss_pred             HHHHHHHHHhc---CcceecccHHhHH
Q 041947           83 ALRACVDLRNA---HVTKLEGGYSAWV  106 (126)
Q Consensus        83 s~~~~~~l~~~---~v~~l~gG~~~w~  106 (126)
                      +..++..|...   +|+++.||+.+|.
T Consensus        69 s~~a~~~l~~~G~~~v~~l~gG~~~w~   95 (96)
T cd01444          69 SAQLAQALREAGFTDVRSLAGGFEAWR   95 (96)
T ss_pred             HHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence            99999999988   7999999999995

Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.

>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily

Probab=99.86  E-value=2.4e-21  Score=122.43  Aligned_cols=91  Identities=29%  Similarity=0.407  Sum_probs=74.7

Q ss_pred             ceeCHHHHHHhh-h------CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHh-----hcCCCCeE
Q 041947            6 ASVGVDTAKDLL-S------SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVAS-----VCSKEDHI   73 (126)
Q Consensus         6 ~~i~~~~l~~~~-~------~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i   73 (126)
                      ..|+++++.+++ +      ++.+|||+|++.+|..||||||+|+|...          .+...+..     .++++++|
T Consensus         2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~----------~l~~~~~~~~~~~~~~~~~~v   71 (121)
T cd01530           2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKD----------ELEEFFLDKPGVASKKKRRVL   71 (121)
T ss_pred             CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHH----------HHHHHHHHhhcccccCCCCEE
Confidence            579999999998 3      36899999999999999999999999841          12222221     14789999


Q ss_pred             EEEeC-CCchHHHHHHHHHh------------c---CcceecccHHhHH
Q 041947           74 IVVCN-SGGRALRACVDLRN------------A---HVTKLEGGYSAWV  106 (126)
Q Consensus        74 vvyc~-~g~~s~~~~~~l~~------------~---~v~~l~gG~~~w~  106 (126)
                      |+||. +|.||..++++|..            +   +|+++.||+.+|.
T Consensus        72 v~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~  120 (121)
T cd01530          72 IFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF  120 (121)
T ss_pred             EEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence            99997 99999999999997            2   8999999999984

They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).

>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily

Probab=99.86  E-value=2.1e-21  Score=119.53  Aligned_cols=97  Identities=23%  Similarity=0.386  Sum_probs=73.6

Q ss_pred             eCHHHHHHhh-h--CCcEEEecCChhhhcccCCCCcccccccccccc-CCCCChHHHHHHHhhcCCCCeEEEEeCCCchH
Q 041947            8 VGVDTAKDLL-S--SGHRFLDVRTTEEFNESHVHGALNVPYLFITQE-GRVKNPEFLTQVASVCSKEDHIIVVCNSGGRA   83 (126)
Q Consensus         8 i~~~~l~~~~-~--~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s   83 (126)
                      ||++++.+++ .  .+.+|||+|++.+|..||||||+|+|+..+... .....-....++..  ..+++||+||.+|.++
T Consensus         1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~vv~~c~~g~~s   78 (105)
T cd01525           1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGELEQLPTVPRLEN--YKGKIIVIVSHSHKHA   78 (105)
T ss_pred             CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhcccccccccccchHHHHh--hcCCeEEEEeCCCccH
Confidence            6889999999 3  267999999999999999999999998754321 11100000122222  2478899999999999


Q ss_pred             HHHHHHHHhc---CcceecccHHhHH
Q 041947           84 LRACVDLRNA---HVTKLEGGYSAWV  106 (126)
Q Consensus        84 ~~~~~~l~~~---~v~~l~gG~~~w~  106 (126)
                      ..++..|...   +|++++||+.+|+
T Consensus        79 ~~~a~~L~~~G~~~v~~l~GG~~a~~  104 (105)
T cd01525          79 ALFAAFLVKCGVPRVCILDGGINALK  104 (105)
T ss_pred             HHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence            9988888877   7999999999995

Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.

>smart00450 RHOD Rhodanese Homology Domain

Probab=99.86  E-value=4.8e-21  Score=115.77  Aligned_cols=93  Identities=31%  Similarity=0.551  Sum_probs=73.6

Q ss_pred             CCcEEEecCChhhhcccCCCCccccccccccccCCCCC-hHHHHHHHhh-cCCCCeEEEEeCCCchHHHHHHHHHhc---
Q 041947           19 SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKN-PEFLTQVASV-CSKEDHIIVVCNSGGRALRACVDLRNA---   93 (126)
Q Consensus        19 ~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~ivvyc~~g~~s~~~~~~l~~~---   93 (126)
                      ++.+|||+|+..+|..+|||||+|+|...+........ ..+...+... ++++++||+||.+|.++..++..|...   
T Consensus         3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~   82 (100)
T smart00450        3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFK   82 (100)
T ss_pred             CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCC
Confidence            56899999999999999999999999976543322111 1233333333 578899999999999999988888888   


Q ss_pred             CcceecccHHhHHhCCCC
Q 041947           94 HVTKLEGGYSAWVDEGVA  111 (126)
Q Consensus        94 ~v~~l~gG~~~w~~~g~~  111 (126)
                      +|++|.||+.+|..++.|
T Consensus        83 ~v~~l~GG~~~w~~~~~~  100 (100)
T smart00450       83 NVYLLDGGYKEWSAAGPP  100 (100)
T ss_pred             ceEEecCCHHHHHhcCCC
Confidence            799999999999988764

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.86  E-value=3.6e-21  Score=139.34  Aligned_cols=112  Identities=21%  Similarity=0.257  Sum_probs=88.5

Q ss_pred             CCceeCHHHHHHhh-hCCcEEEecC--------C-hhhhcccCCCCccccccccccccC------CCCChHHHHHHHhh-
Q 041947            4 DVASVGVDTAKDLL-SSGHRFLDVR--------T-TEEFNESHVHGALNVPYLFITQEG------RVKNPEFLTQVASV-   66 (126)
Q Consensus         4 ~~~~i~~~~l~~~~-~~~~~iiDvR--------~-~~e~~~ghI~ga~~i~~~~~~~~~------~~~~~~~~~~~~~~-   66 (126)
                      +...|++++|.+++ .++.+|||+|        + ..+|..||||||+|+++..+....      ....+.|...+... 
T Consensus        20 ~~~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~G   99 (320)
T PLN02723         20 NEPVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSALG   99 (320)
T ss_pred             CCceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHHcC
Confidence            34579999999999 5678999996        3 368999999999999987654421      22336777888777 


Q ss_pred             cCCCCeEEEEeCCCchHHHHHHHHHh-c---CcceecccHHhHHhCCCCCCCC
Q 041947           67 CSKEDHIIVVCNSGGRALRACVDLRN-A---HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        67 ~~~~~~ivvyc~~g~~s~~~~~~l~~-~---~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      ++++++|||||.+|.+++..+.|+++ +   +|++|+||+.+|..+|+|+++.
T Consensus       100 i~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~  152 (320)
T PLN02723        100 IENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESS  152 (320)
T ss_pred             CCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccC
Confidence            78899999999988766555545444 4   8999999999999999999875

>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family

Probab=99.86  E-value=3.7e-21  Score=119.19  Aligned_cols=100  Identities=28%  Similarity=0.569  Sum_probs=75.7

Q ss_pred             CHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCC-hHH---HHHHHhhcCCCCeEEEEeCCCchH
Q 041947            9 GVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKN-PEF---LTQVASVCSKEDHIIVVCNSGGRA   83 (126)
Q Consensus         9 ~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~ivvyc~~g~~s   83 (126)
                      |++|+++++ +++.+|||+|++.+|..||||||+|+|...+........ ..+   .......++.+++||+||.+|.++
T Consensus         1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~~~   80 (113)
T PF00581_consen    1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGWRS   80 (113)
T ss_dssp             -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSCHH
T ss_pred             CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccccc
Confidence            689999999 889999999999999999999999999966521111111 122   222333357888999999888887


Q ss_pred             HHHHHH-----HHhc---CcceecccHHhHHhC
Q 041947           84 LRACVD-----LRNA---HVTKLEGGYSAWVDE  108 (126)
Q Consensus        84 ~~~~~~-----l~~~---~v~~l~gG~~~w~~~  108 (126)
                      ..++..     |...   +|++|.||+.+|.++
T Consensus        81 ~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~  113 (113)
T PF00581_consen   81 GSAAAARVAWILKKLGFKNVYILDGGFEAWKAE  113 (113)
T ss_dssp             HHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred             chhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence            777666     5554   999999999999863

; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....

>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4

Probab=99.85  E-value=5e-21  Score=124.39  Aligned_cols=91  Identities=23%  Similarity=0.356  Sum_probs=76.4

Q ss_pred             HHHhh--hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHH
Q 041947           13 AKDLL--SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRACVDL   90 (126)
Q Consensus        13 l~~~~--~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l   90 (126)
                      +.+++  +.+.+|||+|++.+|..||||||+|+|..           .+...+.. ++++++|||||.+|.++..++..|
T Consensus         2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~~-----------~l~~~l~~-l~~~~~vVv~c~~g~~a~~aa~~L   69 (145)
T cd01535           2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLRA-----------QLAQALEK-LPAAERYVLTCGSSLLARFAAADL   69 (145)
T ss_pred             hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCHH-----------HHHHHHHh-cCCCCCEEEEeCCChHHHHHHHHH
Confidence            45555  34579999999999999999999999874           44444544 367789999999999999888888


Q ss_pred             Hhc---CcceecccHHhHHhCCCCCCCC
Q 041947           91 RNA---HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        91 ~~~---~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      ...   +|+++.||+.+|..+|+|+++.
T Consensus        70 ~~~G~~~v~~L~GG~~aW~~~g~pl~~~   97 (145)
T cd01535          70 AALTVKPVFVLEGGTAAWIAAGLPVESG   97 (145)
T ss_pred             HHcCCcCeEEecCcHHHHHHCCCCcccC
Confidence            877   8999999999999999999865

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.85  E-value=9.8e-21  Score=139.73  Aligned_cols=100  Identities=28%  Similarity=0.576  Sum_probs=86.7

Q ss_pred             CceeCHHHHHHhhhCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh-cCCCCeEEEEeCCCchH
Q 041947            5 VASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV-CSKEDHIIVVCNSGGRA   83 (126)
Q Consensus         5 ~~~i~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivvyc~~g~~s   83 (126)
                      +..|+++++.+.+.++.+|||+|++.||..||||||+|+|+..           +..++... .+++++||+||.+|.++
T Consensus         2 v~~is~~el~~~l~~~~~ivDvR~~~e~~~ghIpgAi~ip~~~-----------l~~~~~~~~~~~~~~IvvyC~~G~rs   70 (376)
T PRK08762          2 IREISPAEARARAAQGAVLIDVREAHERASGQAEGALRIPRGF-----------LELRIETHLPDRDREIVLICASGTRS   70 (376)
T ss_pred             CceeCHHHHHHHHhCCCEEEECCCHHHHhCCcCCCCEECCHHH-----------HHHHHhhhcCCCCCeEEEEcCCCcHH
Confidence            5679999999999667899999999999999999999999853           33444443 36789999999999999


Q ss_pred             HHHHHHHHhc---CcceecccHHhHHhCCCCCCCC
Q 041947           84 LRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        84 ~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      ..+++.|...   +|++|+||+.+|.++|+|++..
T Consensus        71 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~  105 (376)
T PRK08762         71 AHAAATLRELGYTRVASVAGGFSAWKDAGLPLERP  105 (376)
T ss_pred             HHHHHHHHHcCCCceEeecCcHHHHHhcCCccccc
Confidence            9988888877   7999999999999999998866

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.84  E-value=1.1e-20  Score=146.09  Aligned_cols=110  Identities=16%  Similarity=0.204  Sum_probs=88.7

Q ss_pred             ceeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccc-----cCCCC-ChHHHHHHHhh-cCCCCeEEEEe
Q 041947            6 ASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQ-----EGRVK-NPEFLTQVASV-CSKEDHIIVVC   77 (126)
Q Consensus         6 ~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~-----~~~~~-~~~~~~~~~~~-~~~~~~ivvyc   77 (126)
                      ..|++++|.+++ +++++|||+|++.+|..||||||+|++++.+..     ...++ .+++...+... ++++++|||||
T Consensus         9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVvYd   88 (610)
T PRK09629          9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVVYD   88 (610)
T ss_pred             ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEEC
Confidence            468999999999 667999999999999999999999999764321     12333 35777777777 78999999999


Q ss_pred             CCCc-hHHHHHHHHHhc---CcceecccHHhHHhCCCCCCCC
Q 041947           78 NSGG-RALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        78 ~~g~-~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      .++. +++++++.|..+   +|++|+||+.+|..+|+|+++.
T Consensus        89 ~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~  130 (610)
T PRK09629         89 DEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTD  130 (610)
T ss_pred             CCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccC
Confidence            9775 555655555555   8999999999999999998766

>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain

Probab=99.84  E-value=1.5e-20  Score=121.26  Aligned_cols=99  Identities=24%  Similarity=0.392  Sum_probs=75.6

Q ss_pred             eCHHHHHHhhh-----CCcEEEecCCh--------hhhcc------------cCCCCcccccccccccc-C----CC-CC
Q 041947            8 VGVDTAKDLLS-----SGHRFLDVRTT--------EEFNE------------SHVHGALNVPYLFITQE-G----RV-KN   56 (126)
Q Consensus         8 i~~~~l~~~~~-----~~~~iiDvR~~--------~e~~~------------ghI~ga~~i~~~~~~~~-~----~~-~~   56 (126)
                      |+++++.+.++     ++++|||+|+.        .+|..            ||||||+|+|+..+... +    .+ ..
T Consensus         1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~   80 (138)
T cd01445           1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE   80 (138)
T ss_pred             CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence            57899999984     56899999987        88988            99999999998754321 1    12 22


Q ss_pred             hHHHHHHHhh-cCCCCeEEEEeCC---CchHHHHHHHHHhc---CcceecccHHhHH
Q 041947           57 PEFLTQVASV-CSKEDHIIVVCNS---GGRALRACVDLRNA---HVTKLEGGYSAWV  106 (126)
Q Consensus        57 ~~~~~~~~~~-~~~~~~ivvyc~~---g~~s~~~~~~l~~~---~v~~l~gG~~~w~  106 (126)
                      ++|...+... ++++++||+||++   |..+..+++.|..+   +|++|+||+.+|+
T Consensus        81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~  137 (138)
T cd01445          81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF  137 (138)
T ss_pred             HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence            4677777776 8899999999986   45556554444434   8999999999996

Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.

>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily

Probab=99.84  E-value=1.5e-20  Score=114.17  Aligned_cols=83  Identities=27%  Similarity=0.452  Sum_probs=66.5

Q ss_pred             hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc---C
Q 041947           18 SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA---H   94 (126)
Q Consensus        18 ~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~---~   94 (126)
                      .++.+|||+|++.+|..||||||+|+|+..+..     .......+. .++++++||+||.+|.++..++.+|...   +
T Consensus        10 ~~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~-----~~~~~~~~~-~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~   83 (96)
T cd01529          10 EPGTALLDVRAEDEYAAGHLPGKRSIPGAALVL-----RSQELQALE-APGRATRYVLTCDGSLLARFAAQELLALGGKP   83 (96)
T ss_pred             CCCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcC-----CHHHHHHhh-cCCCCCCEEEEeCChHHHHHHHHHHHHcCCCC
Confidence            456899999999999999999999999864421     111122222 2477899999999999999999999777   8


Q ss_pred             cceecccHHhHH
Q 041947           95 VTKLEGGYSAWV  106 (126)
Q Consensus        95 v~~l~gG~~~w~  106 (126)
                      |++++||+.+|.
T Consensus        84 v~~l~GG~~~W~   95 (96)
T cd01529          84 VALLDGGTSAWV   95 (96)
T ss_pred             EEEeCCCHHHhc
Confidence            999999999996

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.

>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily

Probab=99.84  E-value=1.2e-20  Score=117.72  Aligned_cols=95  Identities=24%  Similarity=0.451  Sum_probs=73.3

Q ss_pred             CceeCHHHHHHhh-h--CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh--cCCCCeEEEEeC-
Q 041947            5 VASVGVDTAKDLL-S--SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV--CSKEDHIIVVCN-   78 (126)
Q Consensus         5 ~~~i~~~~l~~~~-~--~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivvyc~-   78 (126)
                      ++.|+++++.+++ .  ++.+|||+|++ +|..||||||+|+|+..+..       . ...+...  .+++++||+||. 
T Consensus         1 ~~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~-------~-~~~~~~~~~~~~~~~iv~yC~~   71 (113)
T cd01531           1 VSYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKA-------Q-LNQLVQLLSGSKKDTVVFHCAL   71 (113)
T ss_pred             CCcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhh-------C-HHHHHHHHhcCCCCeEEEEeec
Confidence            4678999999998 3  45789999999 99999999999999975431       1 1222211  256789999998 


Q ss_pred             CCchHHHHHHHHHh----------c-CcceecccHHhHHhC
Q 041947           79 SGGRALRACVDLRN----------A-HVTKLEGGYSAWVDE  108 (126)
Q Consensus        79 ~g~~s~~~~~~l~~----------~-~v~~l~gG~~~w~~~  108 (126)
                      ++.++..++.++.+          . +|+++.||+.+|...
T Consensus        72 ~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~  112 (113)
T cd01531          72 SQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS  112 (113)
T ss_pred             CCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence            66788888777643          2 899999999999864

Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.

>PRK01415 hypothetical protein; Validated

Probab=99.83  E-value=2.7e-20  Score=129.64  Aligned_cols=97  Identities=19%  Similarity=0.261  Sum_probs=82.0

Q ss_pred             CceeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHh--hcCCCCeEEEEeCCCc
Q 041947            5 VASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVAS--VCSKEDHIIVVCNSGG   81 (126)
Q Consensus         5 ~~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ivvyc~~g~   81 (126)
                      -..|+++++.+++ +++.+|||+|++.||..|||+||+|+|...+.        ++..++..  .++++++|++||.+|.
T Consensus       111 g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~--------e~~~~~~~~~~~~k~k~Iv~yCtgGi  182 (247)
T PRK01415        111 GEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFK--------QFPAWVQQNQELLKGKKIAMVCTGGI  182 (247)
T ss_pred             ccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHh--------hhHHHHhhhhhhcCCCeEEEECCCCh
Confidence            3578999999999 67899999999999999999999999986543        33333322  2468899999999999


Q ss_pred             hHHHHHHHHHhc---CcceecccHHhHHhCC
Q 041947           82 RALRACVDLRNA---HVTKLEGGYSAWVDEG  109 (126)
Q Consensus        82 ~s~~~~~~l~~~---~v~~l~gG~~~w~~~g  109 (126)
                      ||..++..|.+.   +|+.+.||+.+|.++.
T Consensus       183 Rs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~  213 (247)
T PRK01415        183 RCEKSTSLLKSIGYDEVYHLKGGILQYLEDT  213 (247)
T ss_pred             HHHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence            999999999988   7999999999998753

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.83  E-value=8.7e-20  Score=129.28  Aligned_cols=117  Identities=21%  Similarity=0.244  Sum_probs=95.3

Q ss_pred             CCceeCHHHHHHhh-hC-----CcEEEecCCh--hhhcccCCCCccccccccccccC------CCCChHHHHHHHhh-cC
Q 041947            4 DVASVGVDTAKDLL-SS-----GHRFLDVRTT--EEFNESHVHGALNVPYLFITQEG------RVKNPEFLTQVASV-CS   68 (126)
Q Consensus         4 ~~~~i~~~~l~~~~-~~-----~~~iiDvR~~--~e~~~ghI~ga~~i~~~~~~~~~------~~~~~~~~~~~~~~-~~   68 (126)
                      ....|++++|.+.+ .+     +..+++++..  .+|.++|||||++++++.+.+..      +.+.++|...+... |+
T Consensus         9 ~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI~   88 (285)
T COG2897           9 SEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGIR   88 (285)
T ss_pred             cceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCC
Confidence            45678999999998 44     5666666665  78999999999999998755432      33447888899888 99


Q ss_pred             CCCeEEEEeCCCchHHHHHHHHHhc----CcceecccHHhHHhCCCCCCCCccccc
Q 041947           69 KEDHIIVVCNSGGRALRACVDLRNA----HVTKLEGGYSAWVDEGVAGDKPLEELK  120 (126)
Q Consensus        69 ~~~~ivvyc~~g~~s~~~~~~l~~~----~v~~l~gG~~~w~~~g~~~~~~~~~~~  120 (126)
                      ++++||+|++.+...+..++|+++.    +|++|+||+.+|+++|+|++..+.+..
T Consensus        89 ~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~  144 (285)
T COG2897          89 NDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPEPP  144 (285)
T ss_pred             CCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCCCC
Confidence            9999999999888777778888777    999999999999999999997644433

>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily

Probab=99.82  E-value=4.9e-20  Score=115.03  Aligned_cols=93  Identities=24%  Similarity=0.361  Sum_probs=69.7

Q ss_pred             ceeCHHHHHHhh-h------CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh-cCCCCeEEEEe
Q 041947            6 ASVGVDTAKDLL-S------SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV-CSKEDHIIVVC   77 (126)
Q Consensus         6 ~~i~~~~l~~~~-~------~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivvyc   77 (126)
                      ..|+++++++++ +      ++.+|||+|++ ||..||||||+|+|+..+..       .+...+... ....++||+||
T Consensus         2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~-------~~~~~~~~~~~~~~~~iv~~C   73 (113)
T cd01443           2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQ-------TLPQVYALFSLAGVKLAIFYC   73 (113)
T ss_pred             cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHH-------HHHHHHHHhhhcCCCEEEEEC
Confidence            578999999999 3      25799999999 99999999999999975431       111111111 13467899999


Q ss_pred             CC-CchHHHHHHHHHhc---------CcceecccHHhHH
Q 041947           78 NS-GGRALRACVDLRNA---------HVTKLEGGYSAWV  106 (126)
Q Consensus        78 ~~-g~~s~~~~~~l~~~---------~v~~l~gG~~~w~  106 (126)
                      .+ |.|+..++.++.+.         +++++.||+.+|.
T Consensus        74 ~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~  112 (113)
T cd01443          74 GSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY  112 (113)
T ss_pred             CCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence            96 57888877776542         6788999999995

Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=99.81  E-value=1.2e-19  Score=130.83  Aligned_cols=96  Identities=22%  Similarity=0.358  Sum_probs=81.2

Q ss_pred             CceeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh--cCCCCeEEEEeCCCc
Q 041947            5 VASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV--CSKEDHIIVVCNSGG   81 (126)
Q Consensus         5 ~~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivvyc~~g~   81 (126)
                      ...|+++++.+++ .++.+|||+|++.||..||||||+|+|+..+.        ++..++...  ..++++||+||.+|.
T Consensus       111 ~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~--------~~~~~l~~~~~~~kdk~IvvyC~~G~  182 (314)
T PRK00142        111 GTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFR--------EFPPWVEENLDPLKDKKVVMYCTGGI  182 (314)
T ss_pred             CcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhh--------hhHHHHHHhcCCCCcCeEEEECCCCc
Confidence            4578999999988 67799999999999999999999999997553        233333322  357899999999999


Q ss_pred             hHHHHHHHHHhc---CcceecccHHhHHhC
Q 041947           82 RALRACVDLRNA---HVTKLEGGYSAWVDE  108 (126)
Q Consensus        82 ~s~~~~~~l~~~---~v~~l~gG~~~w~~~  108 (126)
                      |+..++.+|.+.   +|+.+.||+.+|.+.
T Consensus       183 Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~  212 (314)
T PRK00142        183 RCEKASAWMKHEGFKEVYQLEGGIITYGED  212 (314)
T ss_pred             HHHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence            999999999988   799999999999874

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.81  E-value=1.5e-19  Score=128.79  Aligned_cols=108  Identities=26%  Similarity=0.400  Sum_probs=84.9

Q ss_pred             eCHHHHHHhh-hCCcEEEecCChhhhc-----------ccCCCCccccccccccccCCCC-ChHHHHHHHhh-cCCCCeE
Q 041947            8 VGVDTAKDLL-SSGHRFLDVRTTEEFN-----------ESHVHGALNVPYLFITQEGRVK-NPEFLTQVASV-CSKEDHI   73 (126)
Q Consensus         8 i~~~~l~~~~-~~~~~iiDvR~~~e~~-----------~ghI~ga~~i~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~i   73 (126)
                      .+.+++.+.+ +++.+|||+|++.+|.           .||||||+|+|+..+...+.+. .+++...+... ++++++|
T Consensus       155 ~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~i  234 (281)
T PRK11493        155 VRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSFDRPI  234 (281)
T ss_pred             ecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCCCE
Confidence            3455666555 5568999999999985           6999999999988765544433 34555555544 6788999


Q ss_pred             EEEeCCCchHHHHHHHHHhc---CcceecccHHhHHh-CCCCCCCC
Q 041947           74 IVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVD-EGVAGDKP  115 (126)
Q Consensus        74 vvyc~~g~~s~~~~~~l~~~---~v~~l~gG~~~w~~-~g~~~~~~  115 (126)
                      |+||++|.++..++..|..+   +|++|+||+..|.. .++|++..
T Consensus       235 i~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~  280 (281)
T PRK11493        235 IASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA  280 (281)
T ss_pred             EEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence            99999999999988888766   89999999999998 78988753

>PRK05320 rhodanese superfamily protein; Provisional

Probab=99.81  E-value=1.4e-19  Score=127.37  Aligned_cols=97  Identities=27%  Similarity=0.374  Sum_probs=79.8

Q ss_pred             CCceeCHHHHHHhhhC-------CcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc--CCCCeEE
Q 041947            4 DVASVGVDTAKDLLSS-------GHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC--SKEDHII   74 (126)
Q Consensus         4 ~~~~i~~~~l~~~~~~-------~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iv   74 (126)
                      ....|+++++.++++.       +.+|||||++.||..||||||+|+|+..+.        ++..++....  .++++|+
T Consensus       108 ~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~--------~~~~~l~~~~~~~kdk~Iv  179 (257)
T PRK05320        108 RAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFT--------EFPEALAAHRADLAGKTVV  179 (257)
T ss_pred             cCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhh--------hhHHHHHhhhhhcCCCeEE
Confidence            3468999999988822       479999999999999999999999997543        3333433321  2689999


Q ss_pred             EEeCCCchHHHHHHHHHhc---CcceecccHHhHHhC
Q 041947           75 VVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDE  108 (126)
Q Consensus        75 vyc~~g~~s~~~~~~l~~~---~v~~l~gG~~~w~~~  108 (126)
                      +||.+|.|+..++.+|.+.   +|+.+.||+.+|.++
T Consensus       180 vyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~  216 (257)
T PRK05320        180 SFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE  216 (257)
T ss_pred             EECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence            9999999999999999988   799999999999874

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.81  E-value=1.4e-19  Score=131.01  Aligned_cols=107  Identities=17%  Similarity=0.315  Sum_probs=85.4

Q ss_pred             eCHHHHHHhh-hCCcEEEecCChhhh-----------cccCCCCccccccccccc-cC-CCCChHHHHHHHhh-cCCCCe
Q 041947            8 VGVDTAKDLL-SSGHRFLDVRTTEEF-----------NESHVHGALNVPYLFITQ-EG-RVKNPEFLTQVASV-CSKEDH   72 (126)
Q Consensus         8 i~~~~l~~~~-~~~~~iiDvR~~~e~-----------~~ghI~ga~~i~~~~~~~-~~-~~~~~~~~~~~~~~-~~~~~~   72 (126)
                      ++.+++.+.+ .++.+|||+|+..+|           ..||||||+|+|+..+.+ ++ ..+.+++...+... ++++++
T Consensus       192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~gi~~~~~  271 (320)
T PLN02723        192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQEGISLDSP  271 (320)
T ss_pred             ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCCCC
Confidence            6788888888 557889999999888           469999999999976543 23 33445666666654 788999


Q ss_pred             EEEEeCCCchHHHHHHHHHhc---CcceecccHHhHHhC-CCCCCC
Q 041947           73 IIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDE-GVAGDK  114 (126)
Q Consensus        73 ivvyc~~g~~s~~~~~~l~~~---~v~~l~gG~~~w~~~-g~~~~~  114 (126)
                      ||+||++|.++...+..|..+   +|++|+||+..|... .+|++.
T Consensus       272 iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~  317 (320)
T PLN02723        272 IVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVAT  317 (320)
T ss_pred             EEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccC
Confidence            999999999998887777766   799999999999874 567664

>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1

Probab=99.81  E-value=1.8e-19  Score=108.64  Aligned_cols=80  Identities=29%  Similarity=0.431  Sum_probs=62.4

Q ss_pred             hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCch--HHHHHHHHHhc--
Q 041947           18 SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGR--ALRACVDLRNA--   93 (126)
Q Consensus        18 ~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~--s~~~~~~l~~~--   93 (126)
                      .++++|||+|++.+|..+|||||+|+|...+..          .......+++++|||||.+|.+  +..++..|.+.  
T Consensus         8 ~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~----------~~~~~~~~~~~~ivl~c~~G~~~~s~~aa~~L~~~G~   77 (92)
T cd01532           8 REEIALIDVREEDPFAQSHPLWAANLPLSRLEL----------DAWVRIPRRDTPIVVYGEGGGEDLAPRAARRLSELGY   77 (92)
T ss_pred             CCCeEEEECCCHHHHhhCCcccCeeCCHHHHHh----------hhHhhCCCCCCeEEEEeCCCCchHHHHHHHHHHHcCc
Confidence            567899999999999999999999999863321          1111222358899999999876  56777777777  


Q ss_pred             -CcceecccHHhHHh
Q 041947           94 -HVTKLEGGYSAWVD  107 (126)
Q Consensus        94 -~v~~l~gG~~~w~~  107 (126)
                       +|+++.||+.+|.+
T Consensus        78 ~~v~~l~GG~~~W~~   92 (92)
T cd01532          78 TDVALLEGGLQGWRA   92 (92)
T ss_pred             cCEEEccCCHHHHcC
Confidence             89999999999963

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.

>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

Probab=99.80  E-value=1.9e-19  Score=106.99  Aligned_cols=84  Identities=39%  Similarity=0.632  Sum_probs=68.8

Q ss_pred             HHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHH
Q 041947           13 AKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLR   91 (126)
Q Consensus        13 l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~   91 (126)
                      +.+.+ .++..|||+|++.+|..+|||||+|+|+..+..          ......++++++||+||.++.++..++..|.
T Consensus         2 ~~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~----------~~~~~~~~~~~~vv~~c~~~~~a~~~~~~l~   71 (89)
T cd00158           2 LKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEE----------RAALLELDKDKPIVVYCRSGNRSARAAKLLR   71 (89)
T ss_pred             hHHHhcCCCeEEEECCCHHHHhccccCCCEecchHHHhh----------HHHhhccCCCCeEEEEeCCCchHHHHHHHHH
Confidence            34444 678999999999999999999999999963321          1122335789999999999999999999999


Q ss_pred             hc---CcceecccHHhHH
Q 041947           92 NA---HVTKLEGGYSAWV  106 (126)
Q Consensus        92 ~~---~v~~l~gG~~~w~  106 (126)
                      ..   ++++|.||+.+|+
T Consensus        72 ~~G~~~v~~l~gG~~~w~   89 (89)
T cd00158          72 KAGGTNVYNLEGGMLAWK   89 (89)
T ss_pred             HhCcccEEEecCChhhcC
Confidence            88   8999999999994

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.

>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.79  E-value=9.3e-19  Score=108.18  Aligned_cols=87  Identities=32%  Similarity=0.570  Sum_probs=73.7

Q ss_pred             hCCcEEEecCChhhhcccCCCC-ccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc---
Q 041947           18 SSGHRFLDVRTTEEFNESHVHG-ALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA---   93 (126)
Q Consensus        18 ~~~~~iiDvR~~~e~~~ghI~g-a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~---   93 (126)
                      .++.+|||+|++.||..+|||| ++|+|..++........          .+.+++|||||.+|.||..++..|...   
T Consensus        18 ~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~~~~----------~~~~~~ivv~C~~G~rS~~aa~~L~~~G~~   87 (110)
T COG0607          18 GEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAENLLE----------LPDDDPIVVYCASGVRSAAAAAALKLAGFT   87 (110)
T ss_pred             cCCCEEEeccChhHhhhcCCCcceeeeecccchhhhcccc----------cCCCCeEEEEeCCCCChHHHHHHHHHcCCc
Confidence            6789999999999999999999 99999976542211100          478999999999999999999999999   


Q ss_pred             CcceecccHHhHHhCCCCCCC
Q 041947           94 HVTKLEGGYSAWVDEGVAGDK  114 (126)
Q Consensus        94 ~v~~l~gG~~~w~~~g~~~~~  114 (126)
                      +++.+.||+.+|..++++...
T Consensus        88 ~~~~l~gG~~~w~~~~~~~~~  108 (110)
T COG0607          88 NVYNLDGGIDAWKGAGLPLVR  108 (110)
T ss_pred             cccccCCcHHHHHhcCCCccc
Confidence            556899999999999998764

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.79  E-value=1.1e-18  Score=123.72  Aligned_cols=109  Identities=25%  Similarity=0.444  Sum_probs=88.7

Q ss_pred             eeCHHHHHHhh-hCCcEEEecCChhhhcc----------cCCCCcccccccccccc-CCCCChHHHHHHHhh--cCCCCe
Q 041947            7 SVGVDTAKDLL-SSGHRFLDVRTTEEFNE----------SHVHGALNVPYLFITQE-GRVKNPEFLTQVASV--CSKEDH   72 (126)
Q Consensus         7 ~i~~~~l~~~~-~~~~~iiDvR~~~e~~~----------ghI~ga~~i~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~   72 (126)
                      .++..+++..+ .....|||+|++.+|..          ||||||+|+|+..+.++ .++...+....+...  ++++++
T Consensus       157 ~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~~~  236 (285)
T COG2897         157 VVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDPDKE  236 (285)
T ss_pred             cCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCCCCC
Confidence            44556677766 67788999999999988          99999999999887664 456666777766633  899999


Q ss_pred             EEEEeCCCchHHHHHHHHHhc---CcceecccHHhHHh-CCCCCCCC
Q 041947           73 IIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVD-EGVAGDKP  115 (126)
Q Consensus        73 ivvyc~~g~~s~~~~~~l~~~---~v~~l~gG~~~w~~-~g~~~~~~  115 (126)
                      ||+||++|.+++.....|..+   ++.+|+|++..|.. .+.|++..
T Consensus       237 vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g  283 (285)
T COG2897         237 VIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETG  283 (285)
T ss_pred             EEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccC
Confidence            999999999999988888877   66899999999997 45576654

>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE

Probab=99.79  E-value=5.4e-19  Score=108.29  Aligned_cols=79  Identities=25%  Similarity=0.441  Sum_probs=65.2

Q ss_pred             hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh-cCCCCeEEEEeCCCchHHHHHHHHHhc---
Q 041947           18 SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV-CSKEDHIIVVCNSGGRALRACVDLRNA---   93 (126)
Q Consensus        18 ~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivvyc~~g~~s~~~~~~l~~~---   93 (126)
                      .....+||+|++.+|..||||||+|+|...           +...+.+. .+.+++||+||.+|.+|..++..|.+.   
T Consensus        16 ~~~~~lIDvR~~~ef~~ghIpgAinip~~~-----------l~~~l~~~~~~~~~~vvlyC~~G~rS~~aa~~L~~~G~~   84 (101)
T TIGR02981        16 FAAEHWIDVRIPEQYQQEHIQGAINIPLKE-----------IKEHIATAVPDKNDTVKLYCNAGRQSGMAKDILLDMGYT   84 (101)
T ss_pred             ccCCEEEECCCHHHHhcCCCCCCEECCHHH-----------HHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHcCCC
Confidence            456789999999999999999999999863           33444444 356788999999999999999999888   


Q ss_pred             CcceecccHHhHHhC
Q 041947           94 HVTKLEGGYSAWVDE  108 (126)
Q Consensus        94 ~v~~l~gG~~~w~~~  108 (126)
                      +++.+ ||+.+|..-
T Consensus        85 ~v~~~-GG~~~~~~~   98 (101)
T TIGR02981        85 HAENA-GGIKDIAMP   98 (101)
T ss_pred             eEEec-CCHHHhhhh
Confidence            67765 999999753

Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.79  E-value=9.4e-19  Score=135.54  Aligned_cols=109  Identities=14%  Similarity=0.284  Sum_probs=87.3

Q ss_pred             eeCHHHHHHhh-hCCcEEEecCChhhhc--------ccCCCCccccccccccc-cCCC-CChHHHHHHHhh-cCCCCeEE
Q 041947            7 SVGVDTAKDLL-SSGHRFLDVRTTEEFN--------ESHVHGALNVPYLFITQ-EGRV-KNPEFLTQVASV-CSKEDHII   74 (126)
Q Consensus         7 ~i~~~~l~~~~-~~~~~iiDvR~~~e~~--------~ghI~ga~~i~~~~~~~-~~~~-~~~~~~~~~~~~-~~~~~~iv   74 (126)
                      .++.+++.+.+ +++.+|||+|++.+|.        .||||||+|+|+..+.+ .+.+ ..+++.+.+... ++++++||
T Consensus       148 ~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~~VV  227 (610)
T PRK09629        148 TATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEVI  227 (610)
T ss_pred             cccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCCCEE
Confidence            57789999888 6678999999999994        69999999999865433 2323 334566666555 78899999


Q ss_pred             EEeCCCchHHHHHHHHHhc---CcceecccHHhHHh-CCCCCCCC
Q 041947           75 VVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVD-EGVAGDKP  115 (126)
Q Consensus        75 vyc~~g~~s~~~~~~l~~~---~v~~l~gG~~~w~~-~g~~~~~~  115 (126)
                      +||++|.+++.++..|..+   +|++|+|||.+|.. .++|++.+
T Consensus       228 vYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~  272 (610)
T PRK09629        228 THCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVP  272 (610)
T ss_pred             EECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccC
Confidence            9999999998877777665   79999999999997 47898876

>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional

Probab=99.78  E-value=1.4e-18  Score=106.87  Aligned_cols=78  Identities=28%  Similarity=0.520  Sum_probs=64.5

Q ss_pred             CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh-cCCCCeEEEEeCCCchHHHHHHHHHhc---C
Q 041947           19 SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV-CSKEDHIIVVCNSGGRALRACVDLRNA---H   94 (126)
Q Consensus        19 ~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivvyc~~g~~s~~~~~~l~~~---~   94 (126)
                      .+-.|||+|++.+|..+|||||+|+|+.           ++..++... .+.+++||+||.+|.+|..++..|.+.   +
T Consensus        19 ~~~~lIDvR~~~ef~~ghIpGAiniP~~-----------~l~~~l~~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~   87 (104)
T PRK10287         19 AAEHWIDVRVPEQYQQEHVQGAINIPLK-----------EVKERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTH   87 (104)
T ss_pred             CCCEEEECCCHHHHhcCCCCccEECCHH-----------HHHHHHHhcCCCCCCeEEEEeCCChHHHHHHHHHHHcCCCe
Confidence            4568999999999999999999999986           344555554 356788999999999999999999888   6


Q ss_pred             cceecccHHhHHhC
Q 041947           95 VTKLEGGYSAWVDE  108 (126)
Q Consensus        95 v~~l~gG~~~w~~~  108 (126)
                      ++. .||+.+|..-
T Consensus        88 v~~-~GG~~~~~~~  100 (104)
T PRK10287         88 AEN-AGGLKDIAMP  100 (104)
T ss_pred             EEe-cCCHHHHhhh
Confidence            666 6999999753

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=99.77  E-value=2.1e-18  Score=127.89  Aligned_cols=98  Identities=23%  Similarity=0.399  Sum_probs=81.2

Q ss_pred             CCceeCHHHHHHhhh--CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCc
Q 041947            4 DVASVGVDTAKDLLS--SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGG   81 (126)
Q Consensus         4 ~~~~i~~~~l~~~~~--~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~   81 (126)
                      ....|+++++.+.+.  .+.+|||+|++.+|..+|||||+|+|+..+...         ..+ +.++++++||+||.+|.
T Consensus       285 ~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~~---------~~~-~~l~~d~~iVvyC~~G~  354 (392)
T PRK07878        285 AGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSEILSG---------EAL-AKLPQDRTIVLYCKTGV  354 (392)
T ss_pred             CCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcChHHhcch---------hHH-hhCCCCCcEEEEcCCCh
Confidence            456799999999883  357899999999999999999999999754310         112 23578899999999999


Q ss_pred             hHHHHHHHHHhc---CcceecccHHhHHhCCCC
Q 041947           82 RALRACVDLRNA---HVTKLEGGYSAWVDEGVA  111 (126)
Q Consensus        82 ~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~  111 (126)
                      +|..++..|.+.   +|+++.||+.+|.++..+
T Consensus       355 rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~  387 (392)
T PRK07878        355 RSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP  387 (392)
T ss_pred             HHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence            999999999888   799999999999987544

>PRK07411 hypothetical protein; Validated

Probab=99.77  E-value=2.9e-18  Score=127.04  Aligned_cols=102  Identities=26%  Similarity=0.429  Sum_probs=81.4

Q ss_pred             CCceeCHHHHHHhhh---CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCC
Q 041947            4 DVASVGVDTAKDLLS---SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSG   80 (126)
Q Consensus         4 ~~~~i~~~~l~~~~~---~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g   80 (126)
                      .+..|+++++.+++.   ++.+|||+|++.||..||||||+|+|+..+....      ....+.. +.++++||+||.+|
T Consensus       280 ~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~~------~~~~l~~-l~~d~~IVvyC~~G  352 (390)
T PRK07411        280 EIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGP------GVEKVKE-LLNGHRLIAHCKMG  352 (390)
T ss_pred             ccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhccc------chHHHhh-cCCCCeEEEECCCC
Confidence            456799999999882   2579999999999999999999999997654321      1122222 35788999999999


Q ss_pred             chHHHHHHHHHhc--CcceecccHHhHHhCCCCC
Q 041947           81 GRALRACVDLRNA--HVTKLEGGYSAWVDEGVAG  112 (126)
Q Consensus        81 ~~s~~~~~~l~~~--~v~~l~gG~~~w~~~g~~~  112 (126)
                      .||..++..|.++  +.+.+.||+.+|.++..|.
T Consensus       353 ~RS~~aa~~L~~~G~~~~~l~GG~~~W~~~~~p~  386 (390)
T PRK07411        353 GRSAKALGILKEAGIEGTNVKGGITAWSREVDPS  386 (390)
T ss_pred             HHHHHHHHHHHHcCCCeEEecchHHHHHHhcCCC
Confidence            9999999999888  6568999999999876553

>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase

Probab=99.76  E-value=4.6e-18  Score=108.78  Aligned_cols=100  Identities=24%  Similarity=0.273  Sum_probs=74.5

Q ss_pred             eeCHHHHHHhhh---CCcEEEecCChhhhcccCCCCccccccccccccC----------CCCChHHHHHHHhhcCCCCeE
Q 041947            7 SVGVDTAKDLLS---SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEG----------RVKNPEFLTQVASVCSKEDHI   73 (126)
Q Consensus         7 ~i~~~~l~~~~~---~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~i   73 (126)
                      .|+++++.+.++   ++.+|||+|+..+|..||||||+|+|+..+....          .+..++....+...  ..++|
T Consensus         1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~V   78 (132)
T cd01446           1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRRG--ESLAV   78 (132)
T ss_pred             CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHhcC--CCCeE
Confidence            478999999993   5789999999999999999999999997543210          12222333333332  67889


Q ss_pred             EEEeCCCch---------HHHHHHHHHh---c--CcceecccHHhHHhC
Q 041947           74 IVVCNSGGR---------ALRACVDLRN---A--HVTKLEGGYSAWVDE  108 (126)
Q Consensus        74 vvyc~~g~~---------s~~~~~~l~~---~--~v~~l~gG~~~w~~~  108 (126)
                      ||||.++.+         +...+..|..   .  +|++++||+.+|...
T Consensus        79 VvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~  127 (132)
T cd01446          79 VVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE  127 (132)
T ss_pred             EEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence            999997765         5666677776   2  899999999999764

This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=99.75  E-value=4.2e-18  Score=124.14  Aligned_cols=106  Identities=25%  Similarity=0.354  Sum_probs=78.4

Q ss_pred             CHHHHHHhhhCCcEEEecCChhhhcccCCCCcccccccccccc----------C---------CCCChHHHHHHHh---h
Q 041947            9 GVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQE----------G---------RVKNPEFLTQVAS---V   66 (126)
Q Consensus         9 ~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~----------~---------~~~~~~~~~~~~~---~   66 (126)
                      ...++.+.+.++.+|||||++.||..||||||+|+|+......          +         .+....+...+..   .
T Consensus         4 ~~~~~~~~~~~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~~~~   83 (345)
T PRK11784          4 DAQDFRALFLNDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEAWAD   83 (345)
T ss_pred             cHHHHHHHHhCCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHHHHh
Confidence            4567777777788999999999999999999999999543211          0         1112223332221   1


Q ss_pred             c-CCCCeEEEEeC-CCchHHHHHHHHHhc--CcceecccHHhHHhCCCCCCC
Q 041947           67 C-SKEDHIIVVCN-SGGRALRACVDLRNA--HVTKLEGGYSAWVDEGVAGDK  114 (126)
Q Consensus        67 ~-~~~~~ivvyc~-~g~~s~~~~~~l~~~--~v~~l~gG~~~w~~~g~~~~~  114 (126)
                      + +++++||+||. +|.||..++++|...  +++.+.||+.+|+..+.+...
T Consensus        84 ~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~awr~~~~~~~~  135 (345)
T PRK11784         84 FPRANPRGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYKAYRRFVIDTLE  135 (345)
T ss_pred             cccCCCeEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHHHHHHhhHHHHh
Confidence            2 37889999995 788999998888887  799999999999987765444

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=99.74  E-value=8e-18  Score=121.17  Aligned_cols=95  Identities=27%  Similarity=0.429  Sum_probs=69.6

Q ss_pred             CcEEEecCChhhhcccCCCCcccccccccccc---CC----------------CCChHHHHHH---HhhcCCCCeEEEEe
Q 041947           20 GHRFLDVRTTEEFNESHVHGALNVPYLFITQE---GR----------------VKNPEFLTQV---ASVCSKEDHIIVVC   77 (126)
Q Consensus        20 ~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~---~~----------------~~~~~~~~~~---~~~~~~~~~ivvyc   77 (126)
                      +..|||||++.||.+||||||+|+|+......   ++                +....+...+   ....+..+.||+||
T Consensus         2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvyC   81 (311)
T TIGR03167         2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLYC   81 (311)
T ss_pred             CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEEE
Confidence            46899999999999999999999999533211   00                0111222222   22234555699999


Q ss_pred             C-CCchHHHHHHHHHhc--CcceecccHHhHHhCCCCCCC
Q 041947           78 N-SGGRALRACVDLRNA--HVTKLEGGYSAWVDEGVAGDK  114 (126)
Q Consensus        78 ~-~g~~s~~~~~~l~~~--~v~~l~gG~~~w~~~g~~~~~  114 (126)
                      . +|.+|..++++|...  +++++.||+.+|+..+.+...
T Consensus        82 ~~gG~RS~~aa~~L~~~G~~v~~L~GG~~aw~~~~~~~~~  121 (311)
T TIGR03167        82 WRGGMRSGSLAWLLAQIGFRVPRLEGGYKAYRRFVIDQLE  121 (311)
T ss_pred             CCCChHHHHHHHHHHHcCCCEEEecChHHHHHHhhhhhhh
Confidence            5 788999999999888  899999999999998776554

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.72  E-value=2.2e-17  Score=121.14  Aligned_cols=93  Identities=30%  Similarity=0.491  Sum_probs=74.8

Q ss_pred             CCceeCHHHHHHhhhCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchH
Q 041947            4 DVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRA   83 (126)
Q Consensus         4 ~~~~i~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s   83 (126)
                      +...++++++.+. ..+.+|||+|++.+|..+|||||+|+|+..+...          +....++++++||+||.+|.++
T Consensus       259 ~~~~i~~~~~~~~-~~~~~IIDVR~~~ef~~ghIpgAinip~~~l~~~----------~~~~~~~~~~~IvvyC~~G~rS  327 (355)
T PRK05597        259 FGEVLDVPRVSAL-PDGVTLIDVREPSEFAAYSIPGAHNVPLSAIREG----------ANPPSVSAGDEVVVYCAAGVRS  327 (355)
T ss_pred             cccccCHHHHHhc-cCCCEEEECCCHHHHccCcCCCCEEeCHHHhhhc----------cccccCCCCCeEEEEcCCCHHH
Confidence            3456778888844 4567999999999999999999999999654321          1112346788999999999999


Q ss_pred             HHHHHHHHhc---CcceecccHHhHHh
Q 041947           84 LRACVDLRNA---HVTKLEGGYSAWVD  107 (126)
Q Consensus        84 ~~~~~~l~~~---~v~~l~gG~~~w~~  107 (126)
                      ..++..|.+.   +|+++.||+.+|.+
T Consensus       328 ~~Aa~~L~~~G~~nV~~L~GGi~~W~~  354 (355)
T PRK05597        328 AQAVAILERAGYTGMSSLDGGIEGWLD  354 (355)
T ss_pred             HHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence            9999988887   78999999999975

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=99.64  E-value=6e-16  Score=113.99  Aligned_cols=92  Identities=23%  Similarity=0.358  Sum_probs=71.2

Q ss_pred             CceeCHHHHHHhh-hCCcEEEecCChhhhcccCCC---CccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCC
Q 041947            5 VASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVH---GALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSG   80 (126)
Q Consensus         5 ~~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~---ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g   80 (126)
                      ...++++++.+++ +++.+|||||++.||..||||   ||+|||+..+...     ..+...+.. +++ ++|||||.+|
T Consensus       270 ~~~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~-----~~~~~~l~~-~~~-~~Ivv~C~sG  342 (370)
T PRK05600        270 AARTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDD-----ADILHALSP-IDG-DNVVVYCASG  342 (370)
T ss_pred             hcccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcc-----hhhhhhccc-cCC-CcEEEECCCC
Confidence            3468999999988 455799999999999999998   5999999765321     011122222 233 3899999999


Q ss_pred             chHHHHHHHHHhc---C-cceecccHH
Q 041947           81 GRALRACVDLRNA---H-VTKLEGGYS  103 (126)
Q Consensus        81 ~~s~~~~~~l~~~---~-v~~l~gG~~  103 (126)
                      .||..++..|.+.   + |+.+.||+.
T Consensus       343 ~RS~~Aa~~L~~~G~~~~v~~l~GG~~  369 (370)
T PRK05600        343 IRSADFIEKYSHLGHELTLHNLPGGVN  369 (370)
T ss_pred             hhHHHHHHHHHHcCCCCceEEeccccC
Confidence            9999999999988   3 799999975

>COG1054 Predicted sulfurtransferase [General function prediction only]

Probab=99.54  E-value=1.3e-14  Score=102.30  Aligned_cols=95  Identities=22%  Similarity=0.348  Sum_probs=83.7

Q ss_pred             ceeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc--CCCCeEEEEeCCCch
Q 041947            6 ASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC--SKEDHIIVVCNSGGR   82 (126)
Q Consensus         6 ~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivvyc~~g~~   82 (126)
                      ..|+|++..+++ .++.++||+|...||+.||..||++.+...+.        +|+.|+....  -.+++|+.||.+|+|
T Consensus       113 ~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFr--------efP~~v~~~~~~~~~KkVvmyCTGGIR  184 (308)
T COG1054         113 TYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFR--------EFPAWVEENLDLLKDKKVVMYCTGGIR  184 (308)
T ss_pred             CccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhh--------hhHHHHHHHHHhccCCcEEEEcCCcee
Confidence            468899999999 78899999999999999999999999998765        7778777653  367899999999999


Q ss_pred             HHHHHHHHHhc---CcceecccHHhHHhC
Q 041947           83 ALRACVDLRNA---HVTKLEGGYSAWVDE  108 (126)
Q Consensus        83 s~~~~~~l~~~---~v~~l~gG~~~w~~~  108 (126)
                      ...+..||+..   +||-|.||+-.+.++
T Consensus       185 CEKas~~m~~~GF~eVyhL~GGIl~Y~e~  213 (308)
T COG1054         185 CEKASAWMKENGFKEVYHLEGGILKYLED  213 (308)
T ss_pred             ehhhHHHHHHhcchhhhcccchHHHHhhh
Confidence            99999999999   999999999776543

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=99.51  E-value=1.1e-13  Score=97.03  Aligned_cols=111  Identities=23%  Similarity=0.303  Sum_probs=91.7

Q ss_pred             ceeCHHHHHHhh-hCCcEEEecC---------ChhhhcccCCCCccccccccccccC------CCCChHHHHHHHhh-cC
Q 041947            6 ASVGVDTAKDLL-SSGHRFLDVR---------TTEEFNESHVHGALNVPYLFITQEG------RVKNPEFLTQVASV-CS   68 (126)
Q Consensus         6 ~~i~~~~l~~~~-~~~~~iiDvR---------~~~e~~~ghI~ga~~i~~~~~~~~~------~~~~~~~~~~~~~~-~~   68 (126)
                      ..++++++.+.+ +.+++|||+.         ...||...|||||+++.++.....+      ....+.|...+..+ ++
T Consensus         5 ~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~   84 (286)
T KOG1529|consen    5 SIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVD   84 (286)
T ss_pred             cccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcCCC
Confidence            357889999999 7789999984         3457888999999999998765433      34447788888888 88


Q ss_pred             CCCeEEEEeC--CCchHHHHHHHHHhc----CcceecccHHhHHhCCCCCCCCc
Q 041947           69 KEDHIIVVCN--SGGRALRACVDLRNA----HVTKLEGGYSAWVDEGVAGDKPL  116 (126)
Q Consensus        69 ~~~~ivvyc~--~g~~s~~~~~~l~~~----~v~~l~gG~~~w~~~g~~~~~~~  116 (126)
                      +++.+|||++  .|..++..++|+.+.    +|..++||+.+|+.+|+|+.+..
T Consensus        85 n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~  138 (286)
T KOG1529|consen   85 NGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSK  138 (286)
T ss_pred             CCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCcccccc
Confidence            9999999999  777777777777777    89999999999999999999773

>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=1.4e-13  Score=98.38  Aligned_cols=100  Identities=26%  Similarity=0.349  Sum_probs=75.5

Q ss_pred             CCCceeCHHHHHHhh-h------CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc------CC
Q 041947            3 GDVASVGVDTAKDLL-S------SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC------SK   69 (126)
Q Consensus         3 ~~~~~i~~~~l~~~~-~------~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~   69 (126)
                      ..++.|+++.|+.++ +      ....|||+|-+.||..|||+||+|+...+.           ++.+.-..      ..
T Consensus       153 ~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~-----------~~~~f~~~~~~~~~~~  221 (325)
T KOG3772|consen  153 QDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKEL-----------LQDFFLLKDGVPSGSK  221 (325)
T ss_pred             ccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhh-----------hhhhhccccccccccC
Confidence            467899999999999 2      226799999999999999999999987532           22222111      12


Q ss_pred             CCeEEEEeC-CCchHHHHHHHHHhc---------------CcceecccHHhHHhCCCCCC
Q 041947           70 EDHIIVVCN-SGGRALRACVDLRNA---------------HVTKLEGGYSAWVDEGVAGD  113 (126)
Q Consensus        70 ~~~ivvyc~-~g~~s~~~~~~l~~~---------------~v~~l~gG~~~w~~~g~~~~  113 (126)
                      ...+|+||. +..|+..+|..|+..               .+|+|.||+..|-..--.+.
T Consensus       222 ~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~~~~LC  281 (325)
T KOG3772|consen  222 RVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSNYPNLC  281 (325)
T ss_pred             ceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHhccccc
Confidence            345789997 568999999999952               89999999999987644333

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=99.45  E-value=1.1e-13  Score=99.36  Aligned_cols=98  Identities=27%  Similarity=0.460  Sum_probs=80.7

Q ss_pred             CCceeCHHHHHHhh--hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc-CCCCeEEEEeCCC
Q 041947            4 DVASVGVDTAKDLL--SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC-SKEDHIIVVCNSG   80 (126)
Q Consensus         4 ~~~~i~~~~l~~~~--~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ivvyc~~g   80 (126)
                      +..+||..++++.+  ....++||+|+..+|+..|+|+|+|||+..+.....       +.....+ ..+++|+|+|..|
T Consensus       315 ~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~-------~~~~~~~~~~~~~I~ViCrrG  387 (427)
T KOG2017|consen  315 PDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSG-------KKLQGDLNTESKDIFVICRRG  387 (427)
T ss_pred             hhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhhh-------hhhcccccccCCCEEEEeCCC
Confidence            56789999999999  467899999999999999999999999986653211       2222222 3567899999999


Q ss_pred             chHHHHHHHHHhc----CcceecccHHhHHhC
Q 041947           81 GRALRACVDLRNA----HVTKLEGGYSAWVDE  108 (126)
Q Consensus        81 ~~s~~~~~~l~~~----~v~~l~gG~~~w~~~  108 (126)
                      +.|+.+++.|++.    .|.-+.||+.+|...
T Consensus       388 NdSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~  419 (427)
T KOG2017|consen  388 NDSQRAVRILREKFPDSSVRDVIGGLKAWAAK  419 (427)
T ss_pred             CchHHHHHHHHhhCCchhhhhhhhHHHHHHHh
Confidence            9999999999987    787888999999875

>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional

Probab=99.43  E-value=5.4e-13  Score=101.50  Aligned_cols=77  Identities=16%  Similarity=0.278  Sum_probs=62.1

Q ss_pred             HHHHHhhhCCcEEEecCChhhhcccCCCC----ccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHHHH
Q 041947           11 DTAKDLLSSGHRFLDVRTTEEFNESHVHG----ALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRA   86 (126)
Q Consensus        11 ~~l~~~~~~~~~iiDvR~~~e~~~ghI~g----a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~~~   86 (126)
                      .++.+.+.++.++||+|++.||..+||||    |+|+|+..+           ...+.. ++++++||+||.+|.+|..+
T Consensus       398 ~~~~~~~~~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l-----------~~~~~~-l~~~~~iivyC~~G~rS~~a  465 (482)
T PRK01269        398 VETVSELPPDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKL-----------STQFGD-LDQSKTYLLYCDRGVMSRLQ  465 (482)
T ss_pred             hHHHHhcCCCCEEEECCCHHHHhcCCCCCCCceEEECCHHHH-----------HHHHhh-cCCCCeEEEECCCCHHHHHH
Confidence            34455556778999999999999999999    999999644           233333 47888999999999999999


Q ss_pred             HHHHHhc---Ccceec
Q 041947           87 CVDLRNA---HVTKLE   99 (126)
Q Consensus        87 ~~~l~~~---~v~~l~   99 (126)
                      +..|...   +|++|.
T Consensus       466 a~~L~~~G~~nv~~y~  481 (482)
T PRK01269        466 ALYLREQGFSNVKVYR  481 (482)
T ss_pred             HHHHHHcCCccEEecC
Confidence            9999887   677664

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=99.24  E-value=4e-11  Score=84.35  Aligned_cols=90  Identities=21%  Similarity=0.430  Sum_probs=75.0

Q ss_pred             hCCcEEEecCChhhhc-----------ccCCCCccccccccccccCCC-C-ChHHHHHHHhh-cCCCCeEEEEeCCCchH
Q 041947           18 SSGHRFLDVRTTEEFN-----------ESHVHGALNVPYLFITQEGRV-K-NPEFLTQVASV-CSKEDHIIVVCNSGGRA   83 (126)
Q Consensus        18 ~~~~~iiDvR~~~e~~-----------~ghI~ga~~i~~~~~~~~~~~-~-~~~~~~~~~~~-~~~~~~ivvyc~~g~~s   83 (126)
                      .+++.+||.|+..+|.           .||||||+|+|+.++...+.. . .+++..++... +..++++++-|+.|..+
T Consensus       170 ~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa  249 (286)
T KOG1529|consen  170 TKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISA  249 (286)
T ss_pred             cccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhH
Confidence            3568999999988883           589999999999987665433 2 46677777666 67799999999999999


Q ss_pred             HHHHHHHHhc--CcceecccHHhHHh
Q 041947           84 LRACVDLRNA--HVTKLEGGYSAWVD  107 (126)
Q Consensus        84 ~~~~~~l~~~--~v~~l~gG~~~w~~  107 (126)
                      ...+..+.+.  ++.+|+|++..|..
T Consensus       250 ~~i~~al~r~g~~~~lYdGS~~Ew~~  275 (286)
T KOG1529|consen  250 SIIALALERSGPDAKLYDGSWTEWAL  275 (286)
T ss_pred             HHHHHHHHhcCCCcceecccHHHHhh
Confidence            9888888888  89999999999986

>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]

Probab=98.97  E-value=1.2e-09  Score=78.16  Aligned_cols=97  Identities=26%  Similarity=0.383  Sum_probs=73.6

Q ss_pred             CCCceeCHHHHHHhh----hCCc---EEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh-cCCCCeEE
Q 041947            3 GDVASVGVDTAKDLL----SSGH---RFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV-CSKEDHII   74 (126)
Q Consensus         3 ~~~~~i~~~~l~~~~----~~~~---~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv   74 (126)
                      .-+++|+++.|+..+    +.+.   .|||+|=+.||..|||-+||||.-.          .++.-.+... +.--.-+|
T Consensus       239 Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~----------~~l~~~F~hkplThp~aLi  308 (427)
T COG5105         239 DSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISST----------KKLGLLFRHKPLTHPRALI  308 (427)
T ss_pred             cchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchH----------HHHHHHHHhccccCceeEE
Confidence            357899999999988    3333   5999999999999999999999763          1222222222 22344588


Q ss_pred             EEeC-CCchHHHHHHHHHhc---------------CcceecccHHhHHhCC
Q 041947           75 VVCN-SGGRALRACVDLRNA---------------HVTKLEGGYSAWVDEG  109 (126)
Q Consensus        75 vyc~-~g~~s~~~~~~l~~~---------------~v~~l~gG~~~w~~~g  109 (126)
                      +.|. +.+|+...|.+|+.+               +||++.||++++-..-
T Consensus       309 fHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~n~  359 (427)
T COG5105         309 FHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSNY  359 (427)
T ss_pred             EEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhhcC
Confidence            9997 678999999999976               8999999999876553

>COG2603 Predicted ATPase [General function prediction only]

Probab=97.83  E-value=2.8e-05  Score=55.44  Aligned_cols=94  Identities=22%  Similarity=0.315  Sum_probs=59.8

Q ss_pred             HHHHHhhhCCcEEEecCChhhhcccCCCCcccccccccc---------cc-C--------------CCCChHHHHHHHhh
Q 041947           11 DTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFIT---------QE-G--------------RVKNPEFLTQVASV   66 (126)
Q Consensus        11 ~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~---------~~-~--------------~~~~~~~~~~~~~~   66 (126)
                      +.+.+++-.+..+||+|++.+|..|+.|+++|+|...-.         +. +              ......+..|....
T Consensus         6 q~~~~~~~~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f~   85 (334)
T COG2603           6 QDYRALLLADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAFQ   85 (334)
T ss_pred             HHHHHHHhcCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            334444467789999999999999999999999973110         00 0              01111122222222


Q ss_pred             cCCCCeEEEEeC-CCchHHHHHHHHHhc---CcceecccHHhHH
Q 041947           67 CSKEDHIIVVCN-SGGRALRACVDLRNA---HVTKLEGGYSAWV  106 (126)
Q Consensus        67 ~~~~~~ivvyc~-~g~~s~~~~~~l~~~---~v~~l~gG~~~w~  106 (126)
                        .+.++-++|. +|.++...+.|+...   ++--..||..+.+
T Consensus        86 --e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~~~r~iGGeKalr  127 (334)
T COG2603          86 --EENPVGILCARGGLRSKIVQKWLGYAAGIDYPRVIGGEKALR  127 (334)
T ss_pred             --HhCCcceeeccccchhHHHHHHHHHHHHhhhhhhhchHHHHH
Confidence              3455666685 567899999999555   5556779987654

>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function

Probab=97.24  E-value=0.002  Score=39.91  Aligned_cols=76  Identities=16%  Similarity=0.116  Sum_probs=37.5

Q ss_pred             eeCHHHHHHhh-hCCcEEEecCChhhhcccCCCC--------------ccccccccccccCCCCChHHHHHHHhhc-CCC
Q 041947            7 SVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHG--------------ALNVPYLFITQEGRVKNPEFLTQVASVC-SKE   70 (126)
Q Consensus         7 ~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~g--------------a~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~   70 (126)
                      .++++++.++. .+=-.||+.|+..|-.  +-|.              -+++|+..-    .+ ..+-...+...+ ...
T Consensus        14 Q~~~~d~~~la~~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~~~----~~-~~~~v~~f~~~l~~~~   86 (110)
T PF04273_consen   14 QPSPEDLAQLAAQGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVDGG----AI-TEEDVEAFADALESLP   86 (110)
T ss_dssp             S--HHHHHHHHHCT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE----TT----T---HHHHHHHHHHHHTTT
T ss_pred             CCCHHHHHHHHHCCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecCCC----CC-CHHHHHHHHHHHHhCC
Confidence            57889999888 4556999999876632  1221              245665311    11 222233333332 246


Q ss_pred             CeEEEEeCCCchHHHHHHH
Q 041947           71 DHIIVVCNSGGRALRACVD   89 (126)
Q Consensus        71 ~~ivvyc~~g~~s~~~~~~   89 (126)
                      ++|++||.+|.|+...+..
T Consensus        87 ~Pvl~hC~sG~Ra~~l~~l  105 (110)
T PF04273_consen   87 KPVLAHCRSGTRASALWAL  105 (110)
T ss_dssp             TSEEEE-SCSHHHHHHHHH
T ss_pred             CCEEEECCCChhHHHHHHH
Confidence            7999999999998775543

; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=97.15  E-value=0.00012  Score=53.35  Aligned_cols=57  Identities=11%  Similarity=0.001  Sum_probs=42.5

Q ss_pred             CHHHHHHhhhCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCC--CCeEEEE
Q 041947            9 GVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSK--EDHIIVV   76 (126)
Q Consensus         9 ~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ivvy   76 (126)
                      +++++.+.+.....++|+|....|+.+||+|++++|..           .+..++.++++.  .++|++.
T Consensus        17 ~~~~~~~~l~~~~~~~d~rg~i~~a~egIngtis~~~~-----------~~~~~~~~l~~~~~~~~i~l~   75 (314)
T PRK00142         17 DPEAFRDEHLALCKSLGLKGRILVAEEGINGTVSGTIE-----------QTEAYMAWLKADPRFADIRFK   75 (314)
T ss_pred             CHHHHHHHHHHHHHHcCCeeEEEEcCCCceEEEEecHH-----------HHHHHHHHHhhCcCCCCceEE
Confidence            36778777755678999999999999999999999985           455666666432  4555444

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=97.06  E-value=0.00013  Score=56.50  Aligned_cols=92  Identities=20%  Similarity=0.302  Sum_probs=64.3

Q ss_pred             CCceeCHHHHHHhhhCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh----cCCCCeEEEEeCC
Q 041947            4 DVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV----CSKEDHIIVVCNS   79 (126)
Q Consensus         4 ~~~~i~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ivvyc~~   79 (126)
                      -.++||++++...  +...++|+|...||..+|+++++|+|+. +       .+.-..++...    -..++.++++..+
T Consensus       620 ~~prmsAedl~~~--~~l~v~d~r~~~ef~r~~~s~s~nip~~-~-------~ea~l~~~~~l~~~~~~~~~~~v~~~~~  689 (725)
T KOG1093|consen  620 HCPRISAEDLIWL--KMLYVLDTRQESEFQREHFSDSINIPFN-N-------HEADLDWLRFLPGIVCSEGKKCVVVGKN  689 (725)
T ss_pred             cCccccHHHHHHH--HHHHHHhHHHHHHHHHhhccccccCCcc-c-------hHHHHHHhhcchHhHHhhCCeEEEeccc
Confidence            3567787777665  5678999999999999999999999996 1       11222222111    1357777887776


Q ss_pred             CchHHHHHHHHHhc---CcceecccHHhH
Q 041947           80 GGRALRACVDLRNA---HVTKLEGGYSAW  105 (126)
Q Consensus        80 g~~s~~~~~~l~~~---~v~~l~gG~~~w  105 (126)
                      ...+++....+..+   .+.++.+|+.+.
T Consensus       690 ~K~~~e~~~~~~~mk~p~~cil~~~~~~~  718 (725)
T KOG1093|consen  690 DKHAAERLTELYVMKVPRICILHDGFNNI  718 (725)
T ss_pred             hHHHHHHhhHHHHhcccHHHHHHHHHhhc
Confidence            66666666666666   777888888743

>TIGR01244 conserved hypothetical protein TIGR01244

Probab=97.02  E-value=0.006  Score=39.07  Aligned_cols=81  Identities=15%  Similarity=0.168  Sum_probs=46.1

Q ss_pred             ceeCHHHHHHhh-hCCcEEEecCChhhhcccCC----------CCc--cccccccccccCCCCChHHHHHHHhhc-CCCC
Q 041947            6 ASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHV----------HGA--LNVPYLFITQEGRVKNPEFLTQVASVC-SKED   71 (126)
Q Consensus         6 ~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI----------~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   71 (126)
                      ..++++++..+. -+=-.|||.|+..|-....-          .|-  +++|+..    ..+ .++-...+...+ ...+
T Consensus        13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~----~~~-~~~~v~~f~~~~~~~~~   87 (135)
T TIGR01244        13 PQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTA----GDI-TPDDVETFRAAIGAAEG   87 (135)
T ss_pred             CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCC----CCC-CHHHHHHHHHHHHhCCC
Confidence            456778887766 44469999999876432111          222  3455431    111 222222332222 2468


Q ss_pred             eEEEEeCCCchHHHHHHHHH
Q 041947           72 HIIVVCNSGGRALRACVDLR   91 (126)
Q Consensus        72 ~ivvyc~~g~~s~~~~~~l~   91 (126)
                      +|++||.+|.|+..++..+.
T Consensus        88 pvL~HC~sG~Rt~~l~al~~  107 (135)
T TIGR01244        88 PVLAYCRSGTRSSLLWGFRQ  107 (135)
T ss_pred             CEEEEcCCChHHHHHHHHHH
Confidence            89999999998777655443

No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.

>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]

Probab=96.67  E-value=0.00096  Score=47.32  Aligned_cols=38  Identities=29%  Similarity=0.333  Sum_probs=31.7

Q ss_pred             eeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccc
Q 041947            7 SVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFI   48 (126)
Q Consensus         7 ~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~   48 (126)
                      .++++|+.+.+ .+++.++|+|+    ...||.+|+|+-+..+
T Consensus         5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPal   43 (343)
T KOG1717|consen    5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPAL   43 (343)
T ss_pred             HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHH
Confidence            46789999988 67799999999    5679999999877544

>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]

Probab=96.05  E-value=0.013  Score=44.67  Aligned_cols=82  Identities=21%  Similarity=0.367  Sum_probs=51.8

Q ss_pred             cEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc-------C-----CCCeEEEEeCCCc-----hH
Q 041947           21 HRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC-------S-----KEDHIIVVCNSGG-----RA   83 (126)
Q Consensus        21 ~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~-------~-----~~~~ivvyc~~g~-----~s   83 (126)
                      .-|||+|+..+|..||+-.|.|.+-..+.++    ++.|+..+..++       .     -+..+.+.+.+..     +-
T Consensus       327 FFiVDcRpaeqynaGHlstaFhlDc~lmlqe----P~~Fa~av~sLl~aqrqtie~~s~aggeHlcfmGsGr~EED~Ymn  402 (669)
T KOG3636|consen  327 FFIVDCRPAEQYNAGHLSTAFHLDCVLMLQE----PEKFAIAVNSLLCAQRQTIERDSNAGGEHLCFMGSGRDEEDNYMN  402 (669)
T ss_pred             EEEEeccchhhcccccchhhhcccHHHHhcC----HHHHHHHHHHHHHHHHHhhhccccCCcceEEEeccCcchHHHHHH
Confidence            5799999999999999999999876533222    445555443332       1     1244444443322     23


Q ss_pred             HHHHHHHHhc--CcceecccHHhHH
Q 041947           84 LRACVDLRNA--HVTKLEGGYSAWV  106 (126)
Q Consensus        84 ~~~~~~l~~~--~v~~l~gG~~~w~  106 (126)
                      ...|.+|.+-  -|.++.||+.+..
T Consensus       403 MviA~FlQKnk~yVS~~~GGy~~lh  427 (669)
T KOG3636|consen  403 MVIAMFLQKNKLYVSFVQGGYKKLH  427 (669)
T ss_pred             HHHHHHHhcCceEEEEecchHHHHH
Confidence            4445555554  6779999998765

>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B

Probab=95.74  E-value=0.066  Score=35.22  Aligned_cols=90  Identities=11%  Similarity=0.170  Sum_probs=41.7

Q ss_pred             CCceeCHHHHHHhhh-CCcEEEecCChhhhccc---CCCCcc--cccccccccc-------------------------C
Q 041947            4 DVASVGVDTAKDLLS-SGHRFLDVRTTEEFNES---HVHGAL--NVPYLFITQE-------------------------G   52 (126)
Q Consensus         4 ~~~~i~~~~l~~~~~-~~~~iiDvR~~~e~~~g---hI~ga~--~i~~~~~~~~-------------------------~   52 (126)
                      .+..++.++...+.. +=-.|||.|++.|....   .++|..  |+|+......                         .
T Consensus        26 ~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~  105 (164)
T PF13350_consen   26 NLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYREM  105 (164)
T ss_dssp             --TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHHG
T ss_pred             CcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHHH
Confidence            345677777766662 33599999999997653   344543  4444211110                         0


Q ss_pred             CCC-ChHHHHHHHhhcCCCCeEEEEeCCC-chHHHHHHHHHhc
Q 041947           53 RVK-NPEFLTQVASVCSKEDHIIVVCNSG-GRALRACVDLRNA   93 (126)
Q Consensus        53 ~~~-~~~~~~~~~~~~~~~~~ivvyc~~g-~~s~~~~~~l~~~   93 (126)
                      ... .+.+...+....+...+++++|..| +|...++..++..
T Consensus       106 ~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~~  148 (164)
T PF13350_consen  106 LESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLSL  148 (164)
T ss_dssp             GGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHHH
Confidence            011 2344444444444447999999876 6777777776655

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=93.47  E-value=0.35  Score=35.37  Aligned_cols=66  Identities=15%  Similarity=0.177  Sum_probs=43.1

Q ss_pred             CceeCHHHHHHhh-hCCcEEEecCChhhhcc---cCCC-Ccccccccc-ccccCCCCChHHHHHHHhhcCCCCeEEEEeC
Q 041947            5 VASVGVDTAKDLL-SSGHRFLDVRTTEEFNE---SHVH-GALNVPYLF-ITQEGRVKNPEFLTQVASVCSKEDHIIVVCN   78 (126)
Q Consensus         5 ~~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~---ghI~-ga~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~   78 (126)
                      ...+...++.+.+ ..+..|||+|+..+|..   |||+ |..  |.+. +       ...+...+.. +++.++|++-|.
T Consensus       135 ~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~~~~q--psq~~f-------e~~L~~~l~~-~~~~~~i~~e~e  204 (311)
T TIGR03167       135 MTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALGLGPQ--PSQKRF-------ENALAEALRR-LDPGRPIFVEDE  204 (311)
T ss_pred             CCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCCCCCC--CchHHH-------HHHHHHHHHh-CCCCceEEEEeC
Confidence            3456678888888 66789999999999988   8888 422  2110 0       1122233332 367788888887


Q ss_pred             CC
Q 041947           79 SG   80 (126)
Q Consensus        79 ~g   80 (126)
                      +.
T Consensus       205 s~  206 (311)
T TIGR03167       205 SR  206 (311)
T ss_pred             ch
Confidence            65

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>PLN02727 NAD kinase

Probab=91.43  E-value=0.67  Score=38.66  Aligned_cols=81  Identities=16%  Similarity=0.120  Sum_probs=45.5

Q ss_pred             ceeCHHHHHHhh-hCCcEEEecCChhhhcccCCC------------CccccccccccccCCCCChHHHHHHHhhc--CCC
Q 041947            6 ASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVH------------GALNVPYLFITQEGRVKNPEFLTQVASVC--SKE   70 (126)
Q Consensus         6 ~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~------------ga~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~   70 (126)
                      ..++++++..+. .+=-.||+.|+..|- .+.-+            .-+++|+..-    .....+-...+...+  ...
T Consensus       267 gQpspe~la~LA~~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~~----~apt~EqVe~fa~~l~~slp  341 (986)
T PLN02727        267 GQVTEEGLKWLLEKGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEVR----TAPSAEQVEKFASLVSDSSK  341 (986)
T ss_pred             CCCCHHHHHHHHHCCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCCC----CCCCHHHHHHHHHHHHhhcC
Confidence            357888888777 444599999997762 12111            1245655211    111223333333333  257


Q ss_pred             CeEEEEeCCCchH--HHHHHHHH
Q 041947           71 DHIIVVCNSGGRA--LRACVDLR   91 (126)
Q Consensus        71 ~~ivvyc~~g~~s--~~~~~~l~   91 (126)
                      ++|++||.+|.++  +..+.|+.
T Consensus       342 kPVLvHCKSGarRAGamvA~yl~  364 (986)
T PLN02727        342 KPIYLHSKEGVWRTSAMVSRWKQ  364 (986)
T ss_pred             CCEEEECCCCCchHHHHHHHHHH
Confidence            9999999999743  33444444

>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases

Probab=90.34  E-value=1.3  Score=27.73  Aligned_cols=74  Identities=18%  Similarity=0.158  Sum_probs=38.3

Q ss_pred             CCcEEEecCChhhhcccCCCC--ccccccccccccCCC-CChHHHHHHHhhcCCCCeEEEEeCCCc-hHHHH-HHHHHh
Q 041947           19 SGHRFLDVRTTEEFNESHVHG--ALNVPYLFITQEGRV-KNPEFLTQVASVCSKEDHIIVVCNSGG-RALRA-CVDLRN   92 (126)
Q Consensus        19 ~~~~iiDvR~~~e~~~ghI~g--a~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivvyc~~g~-~s~~~-~~~l~~   92 (126)
                      +-..|||+++..+....+.+|  -.++|+......... .-..+.+.+......+++|+|+|..|. |+... +.++..
T Consensus        27 gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~  105 (139)
T cd00127          27 GITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMK  105 (139)
T ss_pred             CCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHHHH
Confidence            445899999977752222222  234554322211000 001233444444456789999998884 76644 344443

Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.

>smart00195 DSPc Dual specificity phosphatase, catalytic domain

Probab=89.90  E-value=0.82  Score=28.82  Aligned_cols=74  Identities=19%  Similarity=0.177  Sum_probs=36.6

Q ss_pred             CCcEEEecCChhhhcc-cCCCCccccccccccccCCC-CChHHHHHHHhhcCCCCeEEEEeCCC-chHHH-HHHHHHhc
Q 041947           19 SGHRFLDVRTTEEFNE-SHVHGALNVPYLFITQEGRV-KNPEFLTQVASVCSKEDHIIVVCNSG-GRALR-ACVDLRNA   93 (126)
Q Consensus        19 ~~~~iiDvR~~~e~~~-ghI~ga~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivvyc~~g-~~s~~-~~~~l~~~   93 (126)
                      +=..||+++...+... ..+ .-.++|+......... .-......+......+++|+|+|..| +||.. ++.+|...
T Consensus        26 gi~~Vi~l~~~~~~~~~~~~-~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~  103 (138)
T smart00195       26 GITHVINVTNEVPNLNKKGF-TYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKY  103 (138)
T ss_pred             CCCEEEEccCCCCCCCCCCC-EEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHH
Confidence            4458999987654211 111 1234554321000000 00222334444456788999999988 47665 34444443

>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.36  E-value=1.7  Score=27.48  Aligned_cols=75  Identities=16%  Similarity=0.201  Sum_probs=43.5

Q ss_pred             ceeCHHHHHHhh-hCCcEEEecCChhhhcccCCCC--------------ccccccccccccCCCCC---hHHHHHHHhhc
Q 041947            6 ASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHG--------------ALNVPYLFITQEGRVKN---PEFLTQVASVC   67 (126)
Q Consensus         6 ~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~g--------------a~~i~~~~~~~~~~~~~---~~~~~~~~~~~   67 (126)
                      ..++++++.+.. .+-..||--||..|=.  .=|+              -.+||...    ...+.   +.|...+..  
T Consensus        14 gQi~~~D~~~iaa~GFksiI~nRPDgEe~--~QP~~~~i~~aa~~aGl~y~~iPV~~----~~iT~~dV~~f~~Al~e--   85 (130)
T COG3453          14 GQISPADIASIAALGFKSIICNRPDGEEP--GQPGFAAIAAAAEAAGLTYTHIPVTG----GGITEADVEAFQRALDE--   85 (130)
T ss_pred             CCCCHHHHHHHHHhccceecccCCCCCCC--CCCChHHHHHHHHhcCCceEEeecCC----CCCCHHHHHHHHHHHHH--
Confidence            357788888877 4556888999866531  1111              12344321    01111   233333333  


Q ss_pred             CCCCeEEEEeCCCchHHHHHHH
Q 041947           68 SKEDHIIVVCNSGGRALRACVD   89 (126)
Q Consensus        68 ~~~~~ivvyc~~g~~s~~~~~~   89 (126)
                       .+.+++-||.+|-|+......
T Consensus        86 -aegPVlayCrsGtRs~~ly~~  106 (130)
T COG3453          86 -AEGPVLAYCRSGTRSLNLYGL  106 (130)
T ss_pred             -hCCCEEeeecCCchHHHHHHH
Confidence             588999999999998764443

>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity

Probab=89.04  E-value=0.89  Score=28.37  Aligned_cols=73  Identities=14%  Similarity=0.150  Sum_probs=35.8

Q ss_pred             cEEEecCChhhh---cccCCCCccccccccccccCCC-CChHHHHHHHhhcCCCCeEEEEeCCC-chHHH-HHHHHHhc
Q 041947           21 HRFLDVRTTEEF---NESHVHGALNVPYLFITQEGRV-KNPEFLTQVASVCSKEDHIIVVCNSG-GRALR-ACVDLRNA   93 (126)
Q Consensus        21 ~~iiDvR~~~e~---~~ghI~ga~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivvyc~~g-~~s~~-~~~~l~~~   93 (126)
                      ..||+++...+.   ....--.-.++|.......... .-......+......+.+|+|+|..| +||.. ++.+|...
T Consensus        20 ~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~   98 (133)
T PF00782_consen   20 THVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAYLMKK   98 (133)
T ss_dssp             EEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHHH
T ss_pred             CEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHHHHHH
Confidence            378899875543   2222222334554321100000 01233344444445788999999987 46554 33444443

Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....

>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species

Probab=88.83  E-value=1.1  Score=29.81  Aligned_cols=31  Identities=23%  Similarity=0.373  Sum_probs=18.1

Q ss_pred             HHHHhhcCCCCeEEEEeCCC-chHHHHHHHHH
Q 041947           61 TQVASVCSKEDHIIVVCNSG-GRALRACVDLR   91 (126)
Q Consensus        61 ~~~~~~~~~~~~ivvyc~~g-~~s~~~~~~l~   91 (126)
                      ..+...+.++++|+++|.+| .|+...|..|+
T Consensus       124 ~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLL  155 (168)
T PF05706_consen  124 EELAARLENGRKVLVHCRGGLGRTGLVAACLL  155 (168)
T ss_dssp             HHHHHHHHTT--EEEE-SSSSSHHHHHHHHHH
T ss_pred             HHHHHHHHcCCEEEEECCCCCCHHHHHHHHHH
Confidence            34444457899999999987 56666554444

The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.

>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]

Probab=86.90  E-value=1.6  Score=29.28  Aligned_cols=36  Identities=22%  Similarity=0.344  Sum_probs=23.4

Q ss_pred             HHHHHHHhhcCCCCeEEEEeCCC-chHHHHHH-HHHhc
Q 041947           58 EFLTQVASVCSKEDHIIVVCNSG-GRALRACV-DLRNA   93 (126)
Q Consensus        58 ~~~~~~~~~~~~~~~ivvyc~~g-~~s~~~~~-~l~~~   93 (126)
                      ++...+...+..+++|+|.|..| +||+..+. ||...
T Consensus        93 ~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~  130 (180)
T COG2453          93 KIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLY  130 (180)
T ss_pred             HHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHH
Confidence            44445555567788999999877 56655444 55444

>PRK12361 hypothetical protein; Provisional

Probab=81.15  E-value=4.1  Score=32.09  Aligned_cols=74  Identities=19%  Similarity=0.200  Sum_probs=35.9

Q ss_pred             hCCcEEEecCChhhhcc-cCCCC---ccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCC-chHHH-HHHHHH
Q 041947           18 SSGHRFLDVRTTEEFNE-SHVHG---ALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSG-GRALR-ACVDLR   91 (126)
Q Consensus        18 ~~~~~iiDvR~~~e~~~-ghI~g---a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g-~~s~~-~~~~l~   91 (126)
                      .+-..|||++.+.+... ...++   -.++|......+....-++..+++......+++|+|+|..| .||+. ++.+|.
T Consensus       119 ~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm  198 (547)
T PRK12361        119 NKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLL  198 (547)
T ss_pred             cCCCEEEEcccccccccccccccCceEEEeecCCCCCCcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHH
Confidence            34468999995332211 11222   24566543221111001222333344445678999999877 55554 344444

>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional

Probab=80.56  E-value=3.3  Score=26.69  Aligned_cols=35  Identities=26%  Similarity=0.306  Sum_probs=26.1

Q ss_pred             CeEEEEeCCC-chHHHHHHHHHhc--CcceecccHHhH
Q 041947           71 DHIIVVCNSG-GRALRACVDLRNA--HVTKLEGGYSAW  105 (126)
Q Consensus        71 ~~ivvyc~~g-~~s~~~~~~l~~~--~v~~l~gG~~~w  105 (126)
                      ++|+++|.++ .||..+..++..+  ++.+...|..+|
T Consensus         3 ~~ILfVC~gN~cRSpmAEa~~~~~~~~~~v~SaG~~~~   40 (144)
T PRK11391          3 NSILVVCTGNICRSPIGERLLRKRLPGVKVKSAGVHGL   40 (144)
T ss_pred             CeEEEEcCCcHhHHHHHHHHHHHhcCCeEEEcccccCC
Confidence            5799999755 5777777777666  677888887665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	126
1tq1_A	129	Solution Structure Of At5g66040, A Putative Protein		4e-24
3g5j_A	134	Crystal Structure Of N-Terminal Domain Of Putative		6e-05
1urh_A	280	The "rhodanese" Fold And Catalytic Mechanism Of 3-M		1e-04

>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From Arabidosis Thaliana Length = 129

Iteration: 1
 Score =  105 bits (263), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 54/108 (50%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Query: 6   ASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVAS 65
           +SV V  A DLL +GHR+LDVRT EEF++ H  GA+NVPY+     G  KN +FL QV+S
Sbjct: 18  SSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSS 77
Query: 66  VCSKEDHIIVVCNSGGRALRACVDLRNAHVTKLE---GGYSAWVDEGV 110
              + D+IIV C SGGR+++A  DL +A  T ++   GGYSAW   G+
Sbjct: 78  HFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGL 125

>pdb|3G5J|A Chain A, Crystal Structure Of N-Terminal Domain Of Putative AtpGTP BINDING Protein From Clostridium Difficile 630 Length = 134

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 27/109 (24%)
Query: 23  FLDVRTTEEFNESHVHGALNVPYLFITQE-----------GR------------VKNPEF 59
           F+DVRT  E+ E H+  A+N P LF   E           G+             K  + 
Sbjct: 20  FVDVRTEGEYEEDHILNAINXP-LFKNNEHNEVGTIYKXQGKHEAIQKGFDYVSYKLKDI 78
Query: 60  LTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAW 105
             Q A +    D+I++ C  GG    + V+L ++   +V +LEGGY A+
Sbjct: 79  YLQAAELALNYDNIVIYCARGGXRSGSIVNLLSSLGVNVYQLEGGYKAY 127

>pdb|1URH|A Chain A, The "rhodanese" Fold And Catalytic Mechanism Of 3-Mercaptopyruvate Sulfotransferases: Crystal Structure Of Ssea From Escherichia Coli Length = 280

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 23/126 (18%)
Query: 15  DLLSSGH----RFLDVRTTEEFN-----------ESHVHGALNVPYLFITQEGRVKNPEF 59
           D+L + H    + +D R    FN             H+ GALNVP+  + +EG +K  + 
Sbjct: 158 DVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDE 217
Query: 60  LTQV--ASVCSKEDHIIVVCNSGGRA---LRACVDLRNAHVTKLEGGYSAWVDEGVAGDK 114
           L  +      S +  IIV   SG  A   L A   L   +V   +G +S W   G   D 
Sbjct: 218 LDAIFFGRGVSYDKPIIVSXGSGVTAAVVLLALATLDVPNVKLYDGAWSEW---GARADL 274
Query: 115 PLEELK 120
           P+E +K
Sbjct: 275 PVEPVK 280

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	126
1tq1_A	129	AT5G66040, senescence-associated family protein; C	3e-35
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	3e-22
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	6e-21
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	2e-20
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	4e-18
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	4e-18
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	5e-18
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	7e-18
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	3e-17
2jtq_A	85	Phage shock protein E; solution structure rhodanes	8e-17
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	2e-16
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	3e-16
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	1e-15
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	3e-15
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	9e-15
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	1e-14
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	1e-14
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	8e-14
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	4e-10
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	1e-08
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	2e-14
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	1e-13
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	4e-13
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	1e-12
3r2u_A	466	Metallo-beta-lactamase family protein; structural	2e-12
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	4e-12
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	5e-12
1vee_A	134	Proline-rich protein family; hypothetical protein,	9e-12
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	8e-11
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	2e-10
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	2e-10
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	3e-10
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	3e-10
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	1e-09
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	2e-08
2gwf_A	157	Ubiquitin carboxyl-terminal hydrolase 8; protein-p	5e-08
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	1e-05
3tg1_B	158	Dual specificity protein phosphatase 10; kinase/rh	2e-05
2ouc_A	142	Dual specificity protein phosphatase 10; rhodanese	6e-05
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	1e-04
1hzm_A	154	Dual specificity protein phosphatase 6; hydrolase;	2e-04
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	5e-04

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3 Length = 129

 Score =  117 bits (294), Expect = 3e-35
 Identities = 54/108 (50%), Positives = 70/108 (64%), Gaps = 3/108 (2%)

Query: 5   VASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVA 64
            +SV V  A DLL +GHR+LDVRT EEF++ H  GA+NVPY+     G  KN +FL QV+
Sbjct: 17  PSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVS 76

Query: 65  SVCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDEG 109
           S   + D+IIV C SGGR+++A  DL +A    V  + GGYSAW   G
Sbjct: 77  SHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNG 124

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae} Length = 139

 Score = 84.4 bits (209), Expect = 3e-22
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 4   DVASVGVDTAKDLLSSGHR---FLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFL 60
           ++ S   +  K ++         +DVR   E++  H+  ++NVPY        +   EF 
Sbjct: 21  NIQSYSFEDMKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFE 80

Query: 61  TQVA-SVCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDEG 109
            Q+          +I  C SG R   A     +    + +   G  + WV  G
Sbjct: 81  KQIGIPKPDSAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMNDWVSHG 133

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A Length = 141

 Score = 80.9 bits (200), Expect = 6e-21
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 21/114 (18%)

Query: 10  VDTAKDLLSSGHR---FLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV 66
               K  L  G      LDVR    +N+ H+ GA+ +P             + + + +S 
Sbjct: 4   AHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPI-----------EDLVDRASSS 52

Query: 67  CSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKPLE 117
             K   I V      +  +A   LR+A   HV++L+GG +AW   G     P E
Sbjct: 53  LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIG----GPTE 102

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A Length = 106

 Score = 78.8 bits (195), Expect = 2e-20
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 18/97 (18%)

Query: 24  LDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRA 83
           LDVR    +N+ H+ GA+ +P             + + + +S   K   I V      + 
Sbjct: 17  LDVRDRSTYNDGHIMGAMAMPI-----------EDLVDRASSSLEKSRDIYVYGAGDEQT 65

Query: 84  LRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKPLE 117
            +A   LR+A   HV++L+GG +AW   G     P E
Sbjct: 66  SQAVNLLRSAGFEHVSELKGGLAAWKAIG----GPTE 98

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori} Length = 110

 Score = 72.7 bits (179), Expect = 4e-18
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 15/112 (13%)

Query: 12  TAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKED 71
           + +++  +    +DVR  +E+ E H+  A  +       E                 K+ 
Sbjct: 8   SLEEVNFNDFIVVDVRELDEYEELHLPNATLISVNDQ--EKLADFLSQ--------HKDK 57

Query: 72  HIIVVCNSGGRALRACVDLRNA--HVTKLEGGYSAWVDEG---VAGDKPLEE 118
            +++ C +G RAL A   +         LEG    +   G   V  D   ++
Sbjct: 58  KVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVYDFEKYGFRMVYDDTCDKK 109

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} Length = 100

 Score = 72.2 bits (178), Expect = 5e-18
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 16/109 (14%)

Query: 5   VASVGVDTAKDLLSSGHRF--LDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQ 62
           + S+ V   K+ +   +    +DVRT +E     + GA  +P                  
Sbjct: 1   MESITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAETIPM-----------NSIPDN 49

Query: 63  VASVCSKEDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGYSAWVDEG 109
           +    +  +   ++C +GGR+ +    L     +   +EGG   + DEG
Sbjct: 50  LNYF-NDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMDEFGDEG 97

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A Length = 108

 Score = 71.9 bits (177), Expect = 7e-18
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 16/106 (15%)

Query: 4   DVASVGVDTAKDLLSSG-HRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQ 62
               + V  A   L       +D+R  + F   H   A ++    +          F+  
Sbjct: 3   QFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTL--------GAFMRD 54

Query: 63  VASVCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAW 105
                  +  ++V+C  G  +  A   L       V  ++GG+ AW
Sbjct: 55  N----DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW 96

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} Length = 94

 Score = 70.3 bits (173), Expect = 3e-17
 Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 19/105 (18%)

Query: 5   VASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVA 64
           +  V  +    LL  G   +DVR  +  +      A  VP               L ++ 
Sbjct: 1   MRKVRPEELPALLEEGVLVVDVRPADRRSTPLPFAAEWVP---------------LEKIQ 45

Query: 65  SVCSK--EDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGYSAW 105
                     +++VC  G  +  A + L         LEGG  A 
Sbjct: 46  KGEHGLPRRPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQAL 90

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A Length = 85

 Score = 68.8 bits (169), Expect = 8e-17
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 12/95 (12%)

Query: 20  GHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNS 79
              ++DVR  E++ + HV GA+N+P     +E + +    +        K D + V CN+
Sbjct: 1   AEHWIDVRVPEQYQQEHVQGAINIPL----KEVKERIATAVP------DKNDTVKVYCNA 50

Query: 80  GGRALRACVDLRNA--HVTKLEGGYSAWVDEGVAG 112
           G ++ +A   L        +  GG        V G
Sbjct: 51  GRQSGQAKEILSEMGYTHVENAGGLKDIAMPKVKG 85

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} Length = 108

 Score = 68.0 bits (167), Expect = 2e-16
 Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 15/108 (13%)

Query: 4   DVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQV 63
              S+      + + +    LDVR   E     +  ++N+P             E   + 
Sbjct: 2   YYRSINAADLYENIKAYT-VLDVREPFELIFGSIANSINIPI-----------SELREKW 49

Query: 64  ASVCSKEDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGYSAWVDEG 109
             +  ++    V+C  G R+  A   L     ++  +EGG  +W++EG
Sbjct: 50  KIL-ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQSWIEEG 96

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris} Length = 139

 Score = 68.9 bits (169), Expect = 3e-16
 Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 11/123 (8%)

Query: 5   VASVGVDTAKDLLSSGHR---FLDVRTTEEF-NESHVHGALNVPYLFITQEGRVKNPEFL 60
           + ++    A  L  SG      +D+R   E   +  + G+ +     +      ++P   
Sbjct: 21  IETLTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFSCTRGMLEFWIDPQSPYAK 80

Query: 61  TQVASVCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKPLE 117
                   ++   +  C  G R+  A    ++     V  +EGG+ AW D G   +    
Sbjct: 81  PIFQ----EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGAWRDAGGPIEAWAP 136

Query: 118 ELK 120
           + K
Sbjct: 137 KKK 139

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3 Length = 137

 Score = 67.3 bits (165), Expect = 1e-15
 Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 18/114 (15%)

Query: 4   DVASVGVDTAKDLLSSGHRF--LDVRTTEEFNESH---VHGALNVPYLFITQEGRVKNPE 58
           D+  +    A  LL        +DVR  +E        V    ++    +  E  +    
Sbjct: 21  DMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKL--EPLLAKSG 78

Query: 59  FLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDEG 109
                      E  ++V C +  RA  A   LR      +   EGG   W++EG
Sbjct: 79  L--------DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEG 124

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A Length = 144

 Score = 66.3 bits (162), Expect = 3e-15
 Identities = 24/115 (20%), Positives = 38/115 (33%), Gaps = 22/115 (19%)

Query: 10  VDTAKDLLSSGHR---FLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV 66
           +      +  G+     +DVR  E + E H+  A+++P             +        
Sbjct: 20  IADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPG-----------NKINEDTTKR 68

Query: 67  CSKEDHIIVVC--NSGGRALRACVDLRNA--HVTKLEGGYSAWVDEGVAGDKPLE 117
            SKE  II  C   +   A +A          V +L GG   W  E       +E
Sbjct: 69  LSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKEN----GEVE 119

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis} Length = 148

 Score = 65.5 bits (159), Expect = 9e-15
 Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 17/122 (13%)

Query: 2   AGDVASVGVDTAKDLLSSG--HRFLDVRTTEEFNESHVHGALNVP----YLFITQEGRVK 55
           AGD+       A ++LS       +DVR   E+    V    ++     Y+         
Sbjct: 4   AGDITP---LQAWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGTH 60

Query: 56  NPEFLTQV-----ASVCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVD 107
           N  FL ++     A     E  +I +C SG R++ A      A       +  G+   +D
Sbjct: 61  NDNFLAELRDRIPADADQHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFEGHLD 120

Query: 108 EG 109
             
Sbjct: 121 AE 122

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Length = 474

 Score = 68.1 bits (166), Expect = 1e-14
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 15/103 (14%)

Query: 11  DTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKE 70
           +    L   G   LDVR  +E+   H+  A ++P   +           +  V     ++
Sbjct: 380 EVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIPLSKL--------AAHIHDV----PRD 427

Query: 71  DHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDEGV 110
             + V C +GGR+  A   LR      V  + GGY AW  +G 
Sbjct: 428 GSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYEAWRGKGF 470

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 67.8 bits (165), Expect = 1e-14
 Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 19/112 (16%)

Query: 5   VASVGVDTAKDLLSSGHRF--LDVRTTEEFNESHVHGALNVPY--LFITQEGRVKNPEFL 60
           +A       +  L +      LDVR  + F ++H   A N+P   L +    RV      
Sbjct: 6   IAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARVPR---- 61

Query: 61  TQVASVCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDEG 109
                   ++  I V  +  G A  A   L +     V  L+GG S W + G
Sbjct: 62  --------RDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGLSGWRNAG 105

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 65.5 bits (159), Expect = 8e-14
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 16/106 (15%)

Query: 8   VGVDTAKDLLSSGH-RFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV 66
           +   T  D L     R LD   +  + + H+ GA  V    +         + L ++   
Sbjct: 379 IDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQL--------KQALERLG-- 428

Query: 67  CSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDEG 109
               +  ++ C S   A  A  +++      V  L+GG SAWV  G
Sbjct: 429 --TAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVAAG 472

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 55.1 bits (132), Expect = 4e-10
 Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 16/109 (14%)

Query: 7   SVGVDTAKDLLSSGH--RFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVA 64
           S+  +  + LL +      LD R  +E+    + G ++VP   +           + ++A
Sbjct: 131 SLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGAEL--------VLRVAELA 182

Query: 65  SVCSKEDHIIVVCNSGGRALRACVDLRNAHVTK----LEGGYSAWVDEG 109
                   +IV C    R++     L NA +      L  G   W   G
Sbjct: 183 P--DPRTRVIVNCAGRTRSIIGTQSLLNAGIPNPVAALRNGTIGWTLAG 229

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 50.9 bits (121), Expect = 1e-08
 Identities = 21/110 (19%), Positives = 34/110 (30%), Gaps = 15/110 (13%)

Query: 4   DVASVGVDTAKDLLSS---GHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFL 60
            V  + +                LDVRT EE+   H+ G+ + P                
Sbjct: 263 GVERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPG----------GQLVQ 312

Query: 61  TQVASVCSKEDHIIVVCNSGGRALRACVDLRN--AHVTKLEGGYSAWVDE 108
                   +   +++V + G RA  +   L      V  L+G   A   E
Sbjct: 313 ETDHVASVRGARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSEADFSE 362

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens} Length = 127

 Score = 64.0 bits (156), Expect = 2e-14
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 16/115 (13%)

Query: 10  VDTAKDLLSSG--HRFLDVRTTEEFNESHVHGALNVPYLFITQ-----EGRVKNPEFLTQ 62
           V   K LL SG  H  LDVR   E +   +  AL++P   + +        +K   +  +
Sbjct: 5   VTDYKRLLDSGAFHLLLDVRPQVEVDICRLPHALHIPLKHLERRDAESLKLLKEAIWEEK 64

Query: 63  VASVCSKEDHIIVVCNSGGRALRACVDLRNA---------HVTKLEGGYSAWVDE 108
             +       I V+C  G  + +A   L++           V  + GG  AW  +
Sbjct: 65  QGTQEGAAVPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMAWAAK 119

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A Length = 124

 Score = 61.6 bits (150), Expect = 1e-13
 Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 23/115 (20%)

Query: 11  DTAKDLLSSGHRF--LDVRTTE-EFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC 67
               D+ ++  ++  LDVR    +  +  + GA+ +P             +  T++  + 
Sbjct: 21  TVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPA-----------KDLATRIGEL- 68

Query: 68  SKEDHIIVVCNSGGR--ALRACVDLRNA--HVTKLEGGYSAWVDEGVAGDKPLEE 118
                 +V   +GG      A + L +A     +L G    W         PLE 
Sbjct: 69  DPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEGWKGMQ----LPLEH 119

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1 Length = 161

 Score = 61.2 bits (148), Expect = 4e-13
 Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 26/126 (20%)

Query: 4   DVASVGVDTAKDLLSSGHRF-------LDVRTTEEFNESHVHGALNVPYLFITQEGRVKN 56
           D+  +  +    +L+            +D R   E+   H+ GA+N+      ++  +K 
Sbjct: 21  DLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVEDFLLKK 80

Query: 57  PEFLTQVASVCSKEDHIIVVCN-SGGRALRACVDLRNA-------------HVTKLEGGY 102
           P   T       K   ++  C  S  R  R C  +R                +  L+GGY
Sbjct: 81  PIVPTD-----GKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGY 135

Query: 103 SAWVDE 108
             +  +
Sbjct: 136 KEFFMK 141

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1 Length = 152

 Score = 60.0 bits (145), Expect = 1e-12
 Identities = 21/132 (15%), Positives = 42/132 (31%), Gaps = 25/132 (18%)

Query: 2   AGDVASVGVDTAKDLLSSGH-RFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFL 60
           A  ++ +       L    +   +DVR  E   + H+ G+L+        +        +
Sbjct: 24  ARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDK--------I 75

Query: 61  TQVASVCSKEDHIIVVC-NSGGRALRACVDLRNA-----------HVTKLEGGYSAWVDE 108
           + +      +D ++     S  R       L N            ++  LE G++ W   
Sbjct: 76  SHLVQNVKDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEAS 135

Query: 109 GVAGDKPLEELK 120
           G    KP+    
Sbjct: 136 G----KPVCRCA 143

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Length = 466

 Score = 61.6 bits (149), Expect = 2e-12
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 15/106 (14%)

Query: 3   GDVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQ 62
                     ++D+  +    LDVR   E+N  H+  A++VP+  +         E    
Sbjct: 370 QSKIQTRSIHSEDITGNESHILDVRNDNEWNNGHLSQAVHVPHGKL--------LETDLP 421

Query: 63  VASVCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAW 105
                +K D I V C SG R+  A   L +    ++  +  GY   
Sbjct: 422 F----NKNDVIYVHCQSGIRSSIAIGILEHKGYHNIINVNEGYKDI 463

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile} Length = 134

 Score = 58.2 bits (140), Expect = 4e-12
 Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 25/121 (20%)

Query: 10  VDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRV--------------- 54
           +   K L      F+DVRT  E+ E H+  A+N+P     +   V               
Sbjct: 7   IKIEKALKLDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHEAIQK 66

Query: 55  -------KNPEFLTQVASVCSKEDHIIVVCNSGG-RALRACVDLRNA--HVTKLEGGYSA 104
                  K  +   Q A +    D+I++ C  GG R+      L +   +V +LEGGY A
Sbjct: 67  GFDYVSYKLKDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126

Query: 105 W 105
           +
Sbjct: 127 Y 127

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 60.3 bits (147), Expect = 5e-12
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 14/105 (13%)

Query: 3   GDVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQ 62
           G V +V       ++ +G   +DVR   E  +  + G++N+P      E R +  E    
Sbjct: 486 GFVDTVQWHEIDRIVENGGYLIDVREPNELKQGMIKGSINIPL----DELRDRLEEV--- 538

Query: 63  VASVCSKEDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGYSAW 105
                  +  I + C  G R   A   L      V  ++GG+  +
Sbjct: 539 -----PVDKDIYITCQLGMRGYVAARMLMEKGYKVKNVDGGFKLY 578

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A Length = 134

 Score = 57.3 bits (138), Expect = 9e-12
 Identities = 15/119 (12%), Positives = 35/119 (29%), Gaps = 11/119 (9%)

Query: 2   AGDVASVGVDTAKDLLSS--GHRFLDVRTTEEFNESHVHGALNVPYL-FITQEGRVKNPE 58
               +S     A   L +    + LD+R T +F +        +      T       P 
Sbjct: 1   GSSGSSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPG 60

Query: 59  FLTQVASVC--SKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGY---SAWVDEG 109
           FL +++      +   + ++    G +      +          ++ G      W++  
Sbjct: 61  FLKKLSLKFKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSS 119

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A* Length = 169

 Score = 55.1 bits (132), Expect = 8e-11
 Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 21/126 (16%)

Query: 4   DVASVGVDTAKDLLSSGHRF--------LDVRTTEEFNESHVHGALNVPY--LFITQEGR 53
           +V  +        +  GH          +DVR   ++   H+    +  Y  L    E  
Sbjct: 29  NVKYLDPTELHRWMQEGHTTTLREPFQVVDVRG-SDYMGGHIKDGWHYAYSRLKQDPEYL 87

Query: 54  VKNPEFLTQVASVCSKEDHIIVVCN-SGGRALRAC---------VDLRNAHVTKLEGGYS 103
            +    L +  +      ++I  C  S  R   A           +L    +  L GG+S
Sbjct: 88  RELKHRLLEKQADGRGALNVIFHCMLSQQRGPSAAMLLLRSLDTAELSRCRLWVLRGGFS 147

Query: 104 AWVDEG 109
            W    
Sbjct: 148 RWQSVY 153

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 29/105 (27%), Positives = 38/105 (36%), Gaps = 15/105 (14%)

Query: 3   GDVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQ 62
           GD   +  D   +L S     LDVR   E     + GA+N+P      E R +  E    
Sbjct: 470 GDATPIHFDQIDNL-SEDQLLLDVRNPGELQNGGLEGAVNIPV----DELRDRMHEL--- 521

Query: 63  VASVCSKEDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGYSAW 105
                 K+  II+    G R   A   L N       L GGY  +
Sbjct: 522 -----PKDKEIIIFSQVGLRGNVAYRQLVNNGYRARNLIGGYRTY 561

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens} Length = 216

 Score = 54.7 bits (131), Expect = 2e-10
 Identities = 30/126 (23%), Positives = 42/126 (33%), Gaps = 25/126 (19%)

Query: 4   DVASVGVDTAKDLLSSGHRF-------LDVRTTEEFNESHVHGALNVPYLFITQEGRVKN 56
           D+  V  +T   LLS   +        +D R   E+   H+ GALN+          +K 
Sbjct: 55  DLKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGALNLYSQEELFNFFLKK 114

Query: 57  PEFLTQVASVCSKEDHIIVVCN-SGGRALRACVDLRNA-------------HVTKLEGGY 102
           P           K   I+  C  S  R  R C  LR                +  L+GGY
Sbjct: 115 PIVPLDT----QKRIIIVFHCEFSSERGPRMCRCLREEDRSLNQYPALYYPELYILKGGY 170

Query: 103 SAWVDE 108
             +  E
Sbjct: 171 RDFFPE 176

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A Length = 211

 Score = 54.3 bits (130), Expect = 3e-10
 Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 25/126 (19%)

Query: 4   DVASVGVDTAKDLLSSGHRF-------LDVRTTEEFNESHVHGALNVPYLFITQEGRVKN 56
           D+  +  +T   LL+            +D R   E+   H+  A+N+P     +   +K+
Sbjct: 42  DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKS 101

Query: 57  PEFLTQVASVCSKEDHIIVVCN-SGGRALRACVDLRNA-------------HVTKLEGGY 102
           P     +     K   +I  C  S  R  R C  +R                +  L+GGY
Sbjct: 102 PIAPCSL----DKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGY 157

Query: 103 SAWVDE 108
             +  +
Sbjct: 158 KEFFPQ 163

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A Length = 175

 Score = 53.8 bits (129), Expect = 3e-10
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 25/126 (19%)

Query: 4   DVASVGVDTAKDLLSSGHRF-------LDVRTTEEFNESHVHGALNVPYLFITQEGRVKN 56
           D+  +  +T   LL+            +D R   E+   H+  A+N+P     +   +K+
Sbjct: 22  DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKS 81

Query: 57  PEFLTQVASVCSKEDHIIVVCN-SGGRALRACVDLRNA-------------HVTKLEGGY 102
           P     +     K   +I     S  R  R C  +R                +  L+GGY
Sbjct: 82  PIAPCSL----DKRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGY 137

Query: 103 SAWVDE 108
             +  +
Sbjct: 138 KEFFPQ 143

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major} Length = 152

 Score = 52.0 bits (124), Expect = 1e-09
 Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 21/120 (17%)

Query: 4   DVASVGVDTAKDLLSSGHRF-----LDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPE 58
           +   +  +   +LL +         +D R   + +   +  ++N+P +  T+E   K  +
Sbjct: 3   NYTYIKPEELVELLDNPDSLVKAAVIDCRD-SDRDCGFIVNSINMPTISCTEEMYEKLAK 61

Query: 59  FLTQVASVCSKEDHIIVVCNS-GGRALRACVDLRNA---------HVTKLEGGYSAWVDE 108
            L +      K++  +  C     RA +       A          V  L GG+ A+   
Sbjct: 62  TLFE-----EKKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEAFYHM 116

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4 Length = 157

 Score = 48.9 bits (116), Expect = 2e-08
 Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 21/107 (19%)

Query: 23  FLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC-----SKEDHIIVVC 77
            +D R  +++ +S +  +L+VP   I+        E      S          ++++++ 
Sbjct: 35  IMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTWKKRGNVEYVVLLD 94

Query: 78  -NSGGRALRACVDLRN---------------AHVTKLEGGYSAWVDE 108
             S  + L+    LR+                    LEGGY  W+  
Sbjct: 95  WFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC 141

>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4 Length = 157

 Score = 47.8 bits (113), Expect = 5e-08
 Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 21/106 (19%)

Query: 24  LDVRTTEEFNESHVHGALNVPYLFITQ-EGRVKNPEFLTQ----VASVCSKEDHIIVVC- 77
           +D R  +++ +S +  +L+VP   I+           L              ++++++  
Sbjct: 41  MDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTWKKRGNVEYVVLLDW 100

Query: 78  NSGGRALRACVDLRNAH---------------VTKLEGGYSAWVDE 108
            S  + L+    LR+                    LEGGY  W+  
Sbjct: 101 FSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC 146

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A Length = 153

 Score = 41.0 bits (95), Expect = 1e-05
 Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 18/100 (18%)

Query: 24  LDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKE-------DHIIVV 76
           +D R   E+N SH+  A+N+    + +    ++   +T++    +K          ++V 
Sbjct: 25  IDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLITELIQHSAKHKVDIDCSQKVVVY 84

Query: 77  CNSGGR-----------ALRACVDLRNAHVTKLEGGYSAW 105
             S               L   ++     V  L GG++ +
Sbjct: 85  DQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEF 124

>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens} Length = 158

 Score = 40.9 bits (95), Expect = 2e-05
 Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 20/102 (19%)

Query: 24  LDVRTTEEFNESHVHGALNVP-----YLFITQEGRVKNPEFLT----QVASVCSKEDHII 74
           +D R   E+N+SH+ GA+++           Q+G++   + ++    + +        II
Sbjct: 38  IDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKDSFKRIFSKEII 97

Query: 75  VVCNSGGRALRACVDLRNAHVTK-----------LEGGYSAW 105
           V   +     R         V +           L+GG S++
Sbjct: 98  VYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLSSF 139

>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens} Length = 142

 Score = 39.2 bits (91), Expect = 6e-05
 Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 20/102 (19%)

Query: 24  LDVRTTEEFNESHVHGALNVPY-----LFITQEGRVKNPEFLT----QVASVCSKEDHII 74
           +D R   E+N+SH+ GA+++           Q+G++   + ++    + +        II
Sbjct: 28  IDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKDSFKRIFSKEII 87

Query: 75  VVCNSGGRALRACVD---------LRN--AHVTKLEGGYSAW 105
           V   +     R             L+        L+GG S++
Sbjct: 88  VYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLSSF 129

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X Length = 271

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 12/88 (13%)

Query: 8   VGVDTAKDLLSSGHR-FLDVRTTEEFN-ES-------HVHGALNVPY-LFITQEGRVKNP 57
              D     L +      D R+ +E+  E        H+ GA+N  +   +     ++  
Sbjct: 149 ASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALRIR 208

Query: 58  EFLTQV--ASVCSKEDHIIVVCNSGGRA 83
             +         + +  I+  C +  R+
Sbjct: 209 TDIAGRLEELGITPDKEIVTHCQTHHRS 236

>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1 Length = 154

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 21/129 (16%), Positives = 37/129 (28%), Gaps = 24/129 (18%)

Query: 1   PAGDVASVGVDTAKDLLSSGHR---FLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNP 57
            +    S  V    + L  G+     +D R  E +  SH+  A+NV    I      K  
Sbjct: 11  ASEMAISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGN 70

Query: 58  EFLTQVASVCS---------KEDHIIVVC---NSGGRALRACVDLR---------NAHVT 96
             +  + +              D +++     +           L               
Sbjct: 71  LPVRALFTRGEDRDRFTRRCGTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAF 130

Query: 97  KLEGGYSAW 105
            LEGG+S +
Sbjct: 131 YLEGGFSKF 139

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2 Length = 280

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 11  DTAKDLLSSGHRFLDVRTTEEFN-ES----------HVHGALNVPYLFITQEGRVKNPEF 59
           D       +  + +D R    FN E           H+ GALNVP+  + +EG +K  + 
Sbjct: 158 DVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDE 217

Query: 60  LTQV--ASVCSKEDHIIVVCNSGGRALRACVDL 90
           L  +      S +  IIV C SG   + A V L
Sbjct: 218 LDAIFFGRGVSYDKPIIVSCGSG---VTAAVVL 247

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
3iwh_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.96
1tq1_A	129	AT5G66040, senescence-associated family protein; C	99.95
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.95
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	99.95
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	99.95
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	99.94
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	99.94
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	99.94
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	99.93
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	99.93
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	99.92
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	99.92
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	99.92
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	99.92
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	99.92
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	99.91
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.91
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	99.91
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	99.9
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.9
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.9
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	99.9
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.89
1vee_A	134	Proline-rich protein family; hypothetical protein,	99.89
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.88
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.88
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.88
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.88
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.88
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.87
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	99.87
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.87
4f67_A	265	UPF0176 protein LPG2838; structural genomics, PSI-	99.87
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.87
2jtq_A	85	Phage shock protein E; solution structure rhodanes	99.87
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.87
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	99.87
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	99.86
2ouc_A	142	Dual specificity protein phosphatase 10; rhodanese	99.86
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.86
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	99.86
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	99.86
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.86
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	99.86
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.86
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	99.85
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.85
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.85
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.84
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.84
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.83
1hzm_A	154	Dual specificity protein phosphatase 6; hydrolase;	99.82
3tg1_B	158	Dual specificity protein phosphatase 10; kinase/rh	99.8
2gwf_A	157	Ubiquitin carboxyl-terminal hydrolase 8; protein-p	99.8
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	99.79
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.79
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.79
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.78
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.76
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.75
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.74
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.71
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.69
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.44
2f46_A	156	Hypothetical protein; structural genomics, joint c	98.29
1v8c_A	168	MOAD related protein; riken structural genomics/pr	95.1
4erc_A	150	Dual specificity protein phosphatase 23; alpha bet	95.07
2img_A	151	Dual specificity protein phosphatase 23; DUSP23, V	94.93
1xri_A	151	AT1G05000; structural genomics, protein structure	92.76
1fpz_A	212	Cyclin-dependent kinase inhibitor 3; alpha-beta sa	92.09
1wrm_A	165	Dual specificity phosphatase 22; DSP, JNK, hydrola	91.9
2hcm_A	164	Dual specificity protein phosphatase; structural g	91.9
2nt2_A	145	Protein phosphatase slingshot homolog 2; alpha/bet	91.85
3ezz_A	144	Dual specificity protein phosphatase 4; alpha/beta	91.15
1yz4_A	160	DUSP15, dual specificity phosphatase-like 15 isofo	90.4
2q05_A	195	Late protein H1, dual specificity protein phosphat	89.88
3f81_A	183	Dual specificity protein phosphatase 3; hydrolase,	89.45
2wgp_A	190	Dual specificity protein phosphatase 14; MKP6, DUS	89.24
1ywf_A	296	Phosphotyrosine protein phosphatase PTPB; four str	87.95
3s4e_A	144	Dual specificity protein phosphatase 19; PTP, prot	87.81
3cm3_A	176	Late protein H1, dual specificity protein phosphat	86.9
2g6z_A	211	Dual specificity protein phosphatase 5; alpha/beta	86.23
3s4o_A	167	Protein tyrosine phosphatase-like protein; structu	84.79
2pq5_A	205	Dual specificity protein phosphatase 13; hydrolase	83.9
3rz2_A	189	Protein tyrosine phosphatase type IVA 1; tyrosine	83.71
3rgo_A	157	Protein-tyrosine phosphatase mitochondrial 1; phos	83.36
2e0t_A	151	Dual specificity phosphatase 26; conserved hypothe	82.91
3v0d_A	339	Voltage-sensor containing phosphatase; PTP, hydrol	82.16
1zzw_A	149	Dual specificity protein phosphatase 10; MKP, PTP,	80.5

>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A

Probab=99.96  E-value=1.5e-29  Score=154.94  Aligned_cols=98  Identities=30%  Similarity=0.425  Sum_probs=85.4

Q ss_pred             CceeCHHHHHHhh--hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCch
Q 041947            5 VASVGVDTAKDLL--SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGR   82 (126)
Q Consensus         5 ~~~i~~~~l~~~~--~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~   82 (126)
                      ++.|+++|+++.+  +++++|||||++.||..||||||+|||++.+.           ..+.. ++++++||+||.+|.|
T Consensus         1 ~k~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~-----------~~~~~-l~~~~~ivv~C~~G~r   68 (103)
T 3iwh_A            1 MKSITTDELKNKLLESKPVQIVDVRTDEETAMGYIPNAKLIPMDTIP-----------DNLNS-FNKNEIYYIVCAGGVR   68 (103)
T ss_dssp             CCEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGGGGG-----------GCGGG-CCTTSEEEEECSSSSH
T ss_pred             CCCcCHHHHHHHHhCCCCeEEEECCChhHHhcCccCCcccCcccchh-----------hhhhh-hcCCCeEEEECCCCHH
Confidence            4689999999988  56789999999999999999999999997654           22222 4889999999999999


Q ss_pred             HHHHHHHHHhc--CcceecccHHhHHhCCCCCCC
Q 041947           83 ALRACVDLRNA--HVTKLEGGYSAWVDEGVAGDK  114 (126)
Q Consensus        83 s~~~~~~l~~~--~v~~l~gG~~~w~~~g~~~~~  114 (126)
                      |..++..|.+.  +++.+.||+.+|.++|+|+++
T Consensus        69 S~~aa~~L~~~G~~~~~l~GG~~~W~~~g~pves  102 (103)
T 3iwh_A           69 SAKVVEYLEANGIDAVNVEGGMHAWGDEGLEIKS  102 (103)
T ss_dssp             HHHHHHHHHTTTCEEEEETTHHHHHCSSSCBCCC
T ss_pred             HHHHHHHHHHcCCCEEEecChHHHHHHCCCccee
Confidence            99999999988  666799999999999999875

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3

Probab=99.95  E-value=1.6e-28  Score=155.84  Aligned_cols=112  Identities=48%  Similarity=0.787  Sum_probs=97.0

Q ss_pred             CCCceeCHHHHHHhhhCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCch
Q 041947            3 GDVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGR   82 (126)
Q Consensus         3 ~~~~~i~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~   82 (126)
                      .....|+++++.++++++.+|||+|++.||..||||||+|||+..+...+.+.+.++...+...++++++|||||.+|.+
T Consensus        15 ~~~~~is~~e~~~~l~~~~~lIDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivvyC~~G~r   94 (129)
T 1tq1_A           15 RVPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSGGR   94 (129)
T ss_dssp             CCCEEEEHHHHHHHHHHTCCEEEESCHHHHHHCCBTTBEECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEESSCSH
T ss_pred             CCCcccCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCcEECcHhhcccccccCCHHHHHHHHhhCCCCCeEEEECCCCcH
Confidence            46778999999998866789999999999999999999999997665555555567777666667889999999999999


Q ss_pred             HHHHHHHHHhc---CcceecccHHhHHhCCCCCCC
Q 041947           83 ALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDK  114 (126)
Q Consensus        83 s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~  114 (126)
                      |..++..|.+.   +|++|.||+.+|..+|+|+++
T Consensus        95 s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  129 (129)
T 1tq1_A           95 SIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTKA  129 (129)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECCHHHHHHHTCCCC-
T ss_pred             HHHHHHHHHHcCCCCeEEeCCcHHHHHhCCCCCCC
Confidence            99999999888   799999999999999999763

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}

Probab=99.95  E-value=2.1e-27  Score=146.46  Aligned_cols=102  Identities=21%  Similarity=0.343  Sum_probs=87.4

Q ss_pred             CCceeCHHHHHHhhhCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchH
Q 041947            4 DVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRA   83 (126)
Q Consensus         4 ~~~~i~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s   83 (126)
                      .+..|+++++.++++. .+|||+|++.||..||||||+|+|+.           ++...+.. ++++++||+||.+|.+|
T Consensus         2 ~~~~is~~el~~~l~~-~~iiDvR~~~e~~~ghIpgA~~ip~~-----------~l~~~~~~-l~~~~~ivvyC~~G~rs   68 (108)
T 3gk5_A            2 YYRSINAADLYENIKA-YTVLDVREPFELIFGSIANSINIPIS-----------ELREKWKI-LERDKKYAVICAHGNRS   68 (108)
T ss_dssp             -CCEECHHHHHHTTTT-CEEEECSCHHHHTTCBCTTCEECCHH-----------HHHHHGGG-SCTTSCEEEECSSSHHH
T ss_pred             cccEeCHHHHHHHHcC-CEEEECCCHHHHhcCcCCCCEEcCHH-----------HHHHHHHh-CCCCCeEEEEcCCCcHH
Confidence            3678999999999965 99999999999999999999999996           33344444 48899999999999999


Q ss_pred             HHHHHHHHhc--CcceecccHHhHHhCCCCCCCCccc
Q 041947           84 LRACVDLRNA--HVTKLEGGYSAWVDEGVAGDKPLEE  118 (126)
Q Consensus        84 ~~~~~~l~~~--~v~~l~gG~~~w~~~g~~~~~~~~~  118 (126)
                      ..++..|...  +|++|.||+.+|.++++|+++.+..
T Consensus        69 ~~aa~~L~~~G~~v~~l~GG~~~W~~~~~~~~~~~~~  105 (108)
T 3gk5_A           69 AAAVEFLSQLGLNIVDVEGGIQSWIEEGYPVVLEHHH  105 (108)
T ss_dssp             HHHHHHHHTTTCCEEEETTHHHHHHHTTCCCBCC---
T ss_pred             HHHHHHHHHcCCCEEEEcCcHHHHHHcCCCCCCCCCC
Confidence            9999999888  8999999999999999999887443

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}

Probab=99.95  E-value=6.5e-28  Score=146.76  Aligned_cols=96  Identities=24%  Similarity=0.447  Sum_probs=84.2

Q ss_pred             CceeCHHHHHHhh--hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCch
Q 041947            5 VASVGVDTAKDLL--SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGR   82 (126)
Q Consensus         5 ~~~i~~~~l~~~~--~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~   82 (126)
                      ++.|+++++.+++  +++.+|||+|++.||..||||||+|+|++.+..           .+. .++++++||+||.+|.+
T Consensus         1 ~~~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~-----------~~~-~l~~~~~ivvyC~~g~r   68 (100)
T 3foj_A            1 MESITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAETIPMNSIPD-----------NLN-YFNDNETYYIICKAGGR   68 (100)
T ss_dssp             CCEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGGGGGG-----------CGG-GSCTTSEEEEECSSSHH
T ss_pred             CCccCHHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCHHHHHH-----------HHH-hCCCCCcEEEEcCCCch
Confidence            3679999999988  567999999999999999999999999976542           222 24789999999999999


Q ss_pred             HHHHHHHHHhc--CcceecccHHhHHhCCCCC
Q 041947           83 ALRACVDLRNA--HVTKLEGGYSAWVDEGVAG  112 (126)
Q Consensus        83 s~~~~~~l~~~--~v~~l~gG~~~w~~~g~~~  112 (126)
                      |..++..|...  +|++|.||+.+|.++|+|+
T Consensus        69 s~~a~~~L~~~G~~v~~l~GG~~~W~~~g~pv  100 (100)
T 3foj_A           69 SAQVVQYLEQNGVNAVNVEGGMDEFGDEGLEH  100 (100)
T ss_dssp             HHHHHHHHHTTTCEEEEETTHHHHHCSSSCBC
T ss_pred             HHHHHHHHHHCCCCEEEecccHHHHHHcCCCC
Confidence            99999999888  8999999999999999985

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.6e-27  Score=150.66  Aligned_cols=112  Identities=21%  Similarity=0.335  Sum_probs=93.9

Q ss_pred             CCCceeCHHHHHHhhh---CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh-cCCCCeEEEEeC
Q 041947            3 GDVASVGVDTAKDLLS---SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV-CSKEDHIIVVCN   78 (126)
Q Consensus         3 ~~~~~i~~~~l~~~~~---~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivvyc~   78 (126)
                      ..+..|+++++.+++.   ++.+|||+|++.||..||||||+|||+..+........++|...+... ++++++||+||.
T Consensus        20 ~~~~~is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ivvyC~   99 (139)
T 3d1p_A           20 SNIQSYSFEDMKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFEKQIGIPKPDSAKELIFYCA   99 (139)
T ss_dssp             CCCEECCHHHHHHHHHHTCTTEEEEECSCHHHHHHCCCTTCEECCTTTCTTGGGSCHHHHHHHHSSCCCCTTSEEEEECS
T ss_pred             CCcceecHHHHHHHHhCCCCCeEEEECcCHHHHhCCCCCCcEEcCHHHhhhhccCCHHHHHHHHhccCCCCCCeEEEECC
Confidence            3677899999999983   578999999999999999999999999877543333334555555433 578899999999


Q ss_pred             CCchHHHHHHHHHhc---CcceecccHHhHHhCCCCCCC
Q 041947           79 SGGRALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDK  114 (126)
Q Consensus        79 ~g~~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~  114 (126)
                      +|.+|..++..|..+   +|++|.||+.+|.++|+|+.+
T Consensus       100 ~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  138 (139)
T 3d1p_A          100 SGKRGGEAQKVASSHGYSNTSLYPGSMNDWVSHGGDKLD  138 (139)
T ss_dssp             SSHHHHHHHHHHHTTTCCSEEECTTHHHHHHHTTGGGCC
T ss_pred             CCchHHHHHHHHHHcCCCCeEEeCCcHHHHHHcCCCCCC
Confidence            999999999999988   799999999999999998764

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A

Probab=99.94  E-value=6.4e-27  Score=143.81  Aligned_cols=95  Identities=28%  Similarity=0.456  Sum_probs=77.0

Q ss_pred             HHHHhh---hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHHHHHH
Q 041947           12 TAKDLL---SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRACV   88 (126)
Q Consensus        12 ~l~~~~---~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~   88 (126)
                      +|++++   .++++|||+|++.||..||||||+|||+.           ++...+...++++++|||||.+|.+|..++.
T Consensus         2 el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~-----------~l~~~~~~~l~~~~~ivvyc~~g~rs~~a~~   70 (106)
T 3hix_A            2 VLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQTSQAVN   70 (106)
T ss_dssp             -----------CCEEEECSCHHHHHTCEETTCEECCGG-----------GHHHHHHHHSCTTSCEEEECSSHHHHHHHHH
T ss_pred             hHHHHHHcCCCCeEEEECCCHHHHhcCcCCCCEeCCHH-----------HHHHHHHhcCCCCCeEEEEECCCChHHHHHH
Confidence            566666   34689999999999999999999999996           3445554556889999999999999999999


Q ss_pred             HHHhc---CcceecccHHhHHhCCCCCCCCcc
Q 041947           89 DLRNA---HVTKLEGGYSAWVDEGVAGDKPLE  117 (126)
Q Consensus        89 ~l~~~---~v~~l~gG~~~w~~~g~~~~~~~~  117 (126)
                      .|...   +|++|.||+.+|.++|+|+++.+.
T Consensus        71 ~L~~~G~~~v~~l~GG~~~W~~~g~~~~~~~~  102 (106)
T 3hix_A           71 LLRSAGFEHVSELKGGLAAWKAIGGPTELEHH  102 (106)
T ss_dssp             HHHHTTCSCEEECTTHHHHHHHTTCCEEECCE
T ss_pred             HHHHcCCcCEEEecCCHHHHHHCCCCCCCCCC
Confidence            99888   799999999999999999887743

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A

Probab=99.94  E-value=1.6e-26  Score=142.36  Aligned_cols=98  Identities=18%  Similarity=0.345  Sum_probs=86.3

Q ss_pred             CCceeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCch
Q 041947            4 DVASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGR   82 (126)
Q Consensus         4 ~~~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~   82 (126)
                      .+..|+++++.+++ +++.+|||+|++.||..||||||+|||+.           ++..++.. ++++++||+||.+|.+
T Consensus         3 ~~~~i~~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~-----------~l~~~~~~-l~~~~~ivvyc~~g~r   70 (108)
T 1gmx_A            3 QFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTND-----------TLGAFMRD-NDFDTPVMVMCYHGNS   70 (108)
T ss_dssp             SCEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEECCHH-----------HHHHHHHH-SCTTSCEEEECSSSSH
T ss_pred             cccccCHHHHHHHHhCCCCEEEEcCCHHHHHhCCCccCEeCCHH-----------HHHHHHHh-cCCCCCEEEEcCCCch
Confidence            46789999999998 55799999999999999999999999996           34455555 5889999999999999


Q ss_pred             HHHHHHHHHhc---CcceecccHHhHHhCCCCCCC
Q 041947           83 ALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDK  114 (126)
Q Consensus        83 s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~  114 (126)
                      |..++..|...   +|++|.||+.+|.++ +|++.
T Consensus        71 s~~a~~~L~~~G~~~v~~l~GG~~~W~~~-~p~~~  104 (108)
T 1gmx_A           71 SKGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAEV  104 (108)
T ss_dssp             HHHHHHHHHHHTCSSEEEETTHHHHHHHH-CGGGE
T ss_pred             HHHHHHHHHHcCCceEEEecCCHHHHHHh-CCccc
Confidence            99999999888   799999999999998 88764

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A

Probab=99.93  E-value=2e-26  Score=148.28  Aligned_cols=98  Identities=28%  Similarity=0.426  Sum_probs=86.2

Q ss_pred             eeCHHHHHHhh-h--CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchH
Q 041947            7 SVGVDTAKDLL-S--SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRA   83 (126)
Q Consensus         7 ~i~~~~l~~~~-~--~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s   83 (126)
                      .|+++++.+++ .  ++++|||+|++.+|..||||||+|||+.           ++..++...++++++|||||.+|.+|
T Consensus         1 mIs~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~-----------~l~~~~~~~l~~~~~ivvyC~~g~rs   69 (141)
T 3ilm_A            1 MSDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQT   69 (141)
T ss_dssp             -CCHHHHHHHHHHSCSCEEEEECSCHHHHHHCEETTCEECCGG-----------GHHHHHHTTSCTTSEEEEECSSHHHH
T ss_pred             CCCHHHHHHHHhcCCCCEEEEECCCHHHHhCCCCCCCEEcCHH-----------HHHHHHHhcCCCCCeEEEEECCChHH
Confidence            38999999999 2  3589999999999999999999999996           44455555678899999999999999


Q ss_pred             HHHHHHHHhc---CcceecccHHhHHhCCCCCCCC
Q 041947           84 LRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        84 ~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      ..+++.|...   +|++|.||+.+|.++|+|++..
T Consensus        70 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~  104 (141)
T 3ilm_A           70 SQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEGI  104 (141)
T ss_dssp             HHHHHHHHHTTCCSEEECTTHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHcCCCCEEEecCHHHHHHHCCCCcccC
Confidence            9999998888   7999999999999999999865

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}

Probab=99.93  E-value=1.7e-25  Score=143.21  Aligned_cols=108  Identities=19%  Similarity=0.333  Sum_probs=85.6

Q ss_pred             CCceeCHHHHHHhhh---CCcEEEecCChhhhcc-cCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCC
Q 041947            4 DVASVGVDTAKDLLS---SGHRFLDVRTTEEFNE-SHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNS   79 (126)
Q Consensus         4 ~~~~i~~~~l~~~~~---~~~~iiDvR~~~e~~~-ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~   79 (126)
                      .+..|+++++.+++.   ++.+|||+|++.||.. ||||||+|||+..+..........    ....++++++|||||.+
T Consensus        20 ~~~~is~~~l~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~~ip~~~l~~~~~~~~~~----~~~~~~~~~~ivvyC~~   95 (139)
T 2hhg_A           20 SIETLTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFSCTRGMLEFWIDPQSPY----AKPIFQEDKKFVFYCAG   95 (139)
T ss_dssp             TSEEECHHHHHHHHHTTCTTEEEEECSCHHHHHHHCCCTTCEECCGGGHHHHHCTTSTT----CCGGGGSSSEEEEECSS
T ss_pred             hcCccCHHHHHHHHhccCCCeEEEECCCHHHHHhCCCCCCeEECChHHHHHhcCccchh----hhccCCCCCeEEEECCC
Confidence            467899999999984   4689999999999999 999999999997553210000000    01124788999999999


Q ss_pred             CchHHHHHHHHHhc---CcceecccHHhHHhCCCCCCCC
Q 041947           80 GGRALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        80 g~~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      |.+|..+++.|...   +|++|+||+.+|.++|+|++..
T Consensus        96 G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~  134 (139)
T 2hhg_A           96 GLRSALAAKTAQDMGLKPVAHIEGGFGAWRDAGGPIEAW  134 (139)
T ss_dssp             SHHHHHHHHHHHHHTCCSEEEETTHHHHHHHTTCCCC--
T ss_pred             ChHHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCCeecC
Confidence            99999998888888   7999999999999999999876

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3

Probab=99.92  E-value=1.8e-25  Score=143.11  Aligned_cols=102  Identities=24%  Similarity=0.376  Sum_probs=87.6

Q ss_pred             CCceeCHHHHHHhhh--CCcEEEecCChhhhcc-cC--CCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeC
Q 041947            4 DVASVGVDTAKDLLS--SGHRFLDVRTTEEFNE-SH--VHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCN   78 (126)
Q Consensus         4 ~~~~i~~~~l~~~~~--~~~~iiDvR~~~e~~~-gh--I~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~   78 (126)
                      .+..|+++++.+++.  ++.+|||||++.||.. ||  ||||+|||+..+..         ...+. .++++++|||||.
T Consensus        21 ~~~~is~~el~~~l~~~~~~~liDVR~~~E~~~~gh~~IpgAinip~~~l~~---------~~~~~-~l~~~~~ivvyC~   90 (137)
T 1qxn_A           21 DMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEP---------LLAKS-GLDPEKPVVVFCK   90 (137)
T ss_dssp             SSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEEECCTTTSHH---------HHHHH-CCCTTSCEEEECC
T ss_pred             cCcccCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCcCCCCCEEcchHHhhh---------HHhhc-cCCCCCeEEEEcC
Confidence            467899999999983  5699999999999999 99  99999999975531         11222 3578999999999


Q ss_pred             CCchHHHHHHHHHhc---CcceecccHHhHHhCCCCCCCC
Q 041947           79 SGGRALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        79 ~g~~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      +|.+|..++..|...   +|++|.||+.+|.++|+|+++.
T Consensus        91 ~G~rS~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~  130 (137)
T 1qxn_A           91 TAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDR  130 (137)
T ss_dssp             SSSCHHHHHHHHHHHTCSCEEEESSCHHHHHHTTCCEECC
T ss_pred             CCcHHHHHHHHHHHcCCcceEEEcCcHHHHHHCCCCcccc
Confidence            999999999999888   7999999999999999998866

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A

Probab=99.92  E-value=1.6e-25  Score=144.52  Aligned_cols=101  Identities=25%  Similarity=0.351  Sum_probs=86.0

Q ss_pred             ceeCHHHHHHhh-h--CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCC--
Q 041947            6 ASVGVDTAKDLL-S--SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSG--   80 (126)
Q Consensus         6 ~~i~~~~l~~~~-~--~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g--   80 (126)
                      ..|+++++.+.+ .  ++++|||+|++.||..||||||+|||+..+...          . ...++++++|||||.+|  
T Consensus        16 ~~is~~el~~~l~~~~~~~~liDvR~~~ey~~ghIpgAinip~~~l~~~----------~-~~~l~~~~~ivvyC~~g~~   84 (144)
T 3nhv_A           16 YETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINED----------T-TKRLSKEKVIITYCWGPAC   84 (144)
T ss_dssp             TEEEHHHHHHHHHTTCCSEEEEECSCHHHHHHCBCTTCEECCGGGCSTT----------T-TTTCCTTSEEEEECSCTTC
T ss_pred             cccCHHHHHHHHHcCCCCEEEEECcCHHHHhcCCCCCCEECCHHHHhHH----------H-HhhCCCCCeEEEEECCCCc
Confidence            368999999999 3  368999999999999999999999999866421          1 12357899999999998  


Q ss_pred             chHHHHHHHHHhc--CcceecccHHhHHhCCCCCCCCcc
Q 041947           81 GRALRACVDLRNA--HVTKLEGGYSAWVDEGVAGDKPLE  117 (126)
Q Consensus        81 ~~s~~~~~~l~~~--~v~~l~gG~~~w~~~g~~~~~~~~  117 (126)
                      .+|..+++.|...  +|++|.||+.+|.++|+|++....
T Consensus        85 ~rs~~aa~~L~~~G~~v~~l~GG~~~W~~~g~pv~~~~~  123 (144)
T 3nhv_A           85 NGATKAAAKFAQLGFRVKELIGGIEYWRKENGEVEGTLG  123 (144)
T ss_dssp             CHHHHHHHHHHHTTCEEEEEESHHHHHHHTTCCCBSSSG
T ss_pred             cHHHHHHHHHHHCCCeEEEeCCcHHHHHHCCCCccCCCC
Confidence            6999999988888  899999999999999999998733

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A

Probab=99.92  E-value=3.4e-25  Score=139.58  Aligned_cols=98  Identities=18%  Similarity=0.269  Sum_probs=83.2

Q ss_pred             ceeCHHHHHHhh-h--CCcEEEecCChhhh-cccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCc
Q 041947            6 ASVGVDTAKDLL-S--SGHRFLDVRTTEEF-NESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGG   81 (126)
Q Consensus         6 ~~i~~~~l~~~~-~--~~~~iiDvR~~~e~-~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~   81 (126)
                      ..|+++++.+++ +  ++.+|||+|++.|| ..||||||+|||+.           ++...+.. ++++++||+||.+|.
T Consensus        15 ~~is~~el~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~nip~~-----------~l~~~~~~-l~~~~~ivvyC~~g~   82 (124)
T 3flh_A           15 LYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAK-----------DLATRIGE-LDPAKTYVVYDWTGG   82 (124)
T ss_dssp             TEECHHHHHHHHHHTCCCEEEEECCCSCHHHHCCEETTCEECCHH-----------HHHHHGGG-SCTTSEEEEECSSSS
T ss_pred             ceecHHHHHHHHHcCCCCEEEEECCCHHHHHhcCcCCCCEECCHH-----------HHHHHHhc-CCCCCeEEEEeCCCC
Confidence            469999999999 3  34899999999998 99999999999996           34444443 588999999999999


Q ss_pred             h--HHHHHHHHHhc--CcceecccHHhHHhCCCCCCCC
Q 041947           82 R--ALRACVDLRNA--HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        82 ~--s~~~~~~l~~~--~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      +  |..++..|...  +|++|.||+.+|..+|+|..+.
T Consensus        83 r~~s~~a~~~L~~~G~~v~~l~GG~~~W~~~~~p~~~~  120 (124)
T 3flh_A           83 TTLGKTALLVLLSAGFEAYELAGALEGWKGMQLPLEHH  120 (124)
T ss_dssp             CSHHHHHHHHHHHHTCEEEEETTHHHHHHHTTCCEEC-
T ss_pred             chHHHHHHHHHHHcCCeEEEeCCcHHHHHHcCCCCCcc
Confidence            8  78888888877  8999999999999999987654

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=99.92  E-value=6.1e-26  Score=136.55  Aligned_cols=92  Identities=23%  Similarity=0.271  Sum_probs=73.5

Q ss_pred             CceeCHHHHHHhhhCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHH
Q 041947            5 VASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRAL   84 (126)
Q Consensus         5 ~~~i~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~   84 (126)
                      +..|+++++.++++++.+|||+|++.||..||||||+|+|+..+..           .+. .+++ ++||+||.+|.+|.
T Consensus         1 ~~~is~~~l~~~~~~~~~liDvR~~~e~~~ghi~gAi~ip~~~l~~-----------~~~-~l~~-~~ivvyC~~g~rs~   67 (94)
T 1wv9_A            1 MRKVRPEELPALLEEGVLVVDVRPADRRSTPLPFAAEWVPLEKIQK-----------GEH-GLPR-RPLLLVCEKGLLSQ   67 (94)
T ss_dssp             -CEECGGGHHHHHHTTCEEEECCCC--CCSCCSSCCEECCHHHHTT-----------TCC-CCCS-SCEEEECSSSHHHH
T ss_pred             CCcCCHHHHHHHHHCCCEEEECCCHHHHhcccCCCCEECCHHHHHH-----------HHH-hCCC-CCEEEEcCCCChHH
Confidence            3579999999988668999999999999999999999999975532           111 2467 99999999999999


Q ss_pred             HHHHHHHhc--CcceecccHHhHHhCC
Q 041947           85 RACVDLRNA--HVTKLEGGYSAWVDEG  109 (126)
Q Consensus        85 ~~~~~l~~~--~v~~l~gG~~~w~~~g  109 (126)
                      .++..|...  +|++|.||+.+|.++|
T Consensus        68 ~a~~~L~~~G~~v~~l~GG~~~W~~~G   94 (94)
T 1wv9_A           68 VAALYLEAEGYEAMSLEGGLQALTQGK   94 (94)
T ss_dssp             HHHHHHHHHTCCEEEETTGGGCC----
T ss_pred             HHHHHHHHcCCcEEEEcccHHHHHhCc
Confidence            999999888  7889999999998765

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1

Probab=99.92  E-value=2.3e-25  Score=144.87  Aligned_cols=106  Identities=17%  Similarity=0.260  Sum_probs=87.6

Q ss_pred             CCCceeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeC-CC
Q 041947            3 GDVASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCN-SG   80 (126)
Q Consensus         3 ~~~~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~-~g   80 (126)
                      ..+..|+++++.+++ +++.+|||+|++.||..||||||+|||+..+..       .+ ..+...++++++|||||. +|
T Consensus        25 ~~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpgAinip~~~l~~-------~~-~~l~~~~~~~~~iVvyC~~~G   96 (152)
T 1t3k_A           25 RSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDD-------KI-SHLVQNVKDKDTLVFHSALSQ   96 (152)
T ss_dssp             SSSEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSSEEECCSSSST-------TH-HHHHHTCCSCCEEEESSSCCS
T ss_pred             CCCceECHHHHHHHhcCCCEEEEECCChhhccCccCCCCEECCHHHHHH-------HH-HHHHHhcCCCCEEEEEcCCCC
Confidence            467789999999888 578999999999999999999999999976542       22 233333478899999999 99


Q ss_pred             chHHHHHHHHHh--------c---CcceecccHHhHHhCCCCCCCCc
Q 041947           81 GRALRACVDLRN--------A---HVTKLEGGYSAWVDEGVAGDKPL  116 (126)
Q Consensus        81 ~~s~~~~~~l~~--------~---~v~~l~gG~~~w~~~g~~~~~~~  116 (126)
                      .++..++..|.+        .   +|++|+||+.+|.++|+|+++.+
T Consensus        97 ~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~~  143 (152)
T 1t3k_A           97 VRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRCA  143 (152)
T ss_dssp             SSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSCCCS
T ss_pred             cchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHHHHHcCCccccCC
Confidence            999888887743        3   79999999999999999998764

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}

Probab=99.91  E-value=3e-25  Score=137.15  Aligned_cols=96  Identities=19%  Similarity=0.234  Sum_probs=80.6

Q ss_pred             CceeCHHHHHHhhhCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHh-hcCCCCeEEEEeCCCchH
Q 041947            5 VASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVAS-VCSKEDHIIVVCNSGGRA   83 (126)
Q Consensus         5 ~~~i~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivvyc~~g~~s   83 (126)
                      ...|+++++.   .++.+|||+|++.||..||||||+|+|+..+.           ..+.. .++++++||+||.+|.+|
T Consensus         4 ~~~is~~el~---~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~-----------~~~~~~~~~~~~~ivvyC~~G~rs   69 (110)
T 2k0z_A            4 DYAISLEEVN---FNDFIVVDVRELDEYEELHLPNATLISVNDQE-----------KLADFLSQHKDKKVLLHCRAGRRA   69 (110)
T ss_dssp             TTEEETTTCC---GGGSEEEEEECHHHHHHSBCTTEEEEETTCHH-----------HHHHHHHSCSSSCEEEECSSSHHH
T ss_pred             eeeeCHHHhc---cCCeEEEECCCHHHHhcCcCCCCEEcCHHHHH-----------HHHHhcccCCCCEEEEEeCCCchH
Confidence            4567776652   46789999999999999999999999997443           33332 358899999999999999


Q ss_pred             HHHHHHHHhc---CcceecccHHhHHhCCCCCCCC
Q 041947           84 LRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        84 ~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      ..++..|...   + ++|.||+.+|.++|+|++..
T Consensus        70 ~~aa~~L~~~G~~~-~~l~GG~~~W~~~g~p~~~~  103 (110)
T 2k0z_A           70 LDAAKSMHELGYTP-YYLEGNVYDFEKYGFRMVYD  103 (110)
T ss_dssp             HHHHHHHHHTTCCC-EEEESCGGGTTTTTCCCBCC
T ss_pred             HHHHHHHHHCCCCE-EEecCCHHHHHHCCCcEecC
Confidence            9999999888   6 99999999999999998866

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.91  E-value=6.5e-24  Score=149.06  Aligned_cols=111  Identities=20%  Similarity=0.232  Sum_probs=94.9

Q ss_pred             ceeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCcccccccccccc-----C-CCCChHHHHHHHhh-cCCCCeEEEEe
Q 041947            6 ASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQE-----G-RVKNPEFLTQVASV-CSKEDHIIVVC   77 (126)
Q Consensus         6 ~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~-----~-~~~~~~~~~~~~~~-~~~~~~ivvyc   77 (126)
                      ..|+++++.+++ +++.+|||+|++.+|..||||||+|+|+..+...     . ....+.|..++... ++++++|||||
T Consensus         9 ~~is~~~l~~~l~~~~~~iiDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~vvvyc   88 (271)
T 1e0c_A            9 LVIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVYD   88 (271)
T ss_dssp             SEECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCCTTCTTSCCCHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             ceeeHHHHHHhccCCCeEEEEcCCcchhhhCcCCCCEECCHHHhccCCCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEEc
Confidence            489999999999 5688999999999999999999999999876543     1 22335677788776 78999999999


Q ss_pred             CCCc-hHHHHHHHHHhc---CcceecccHHhHHhCCCCCCCCc
Q 041947           78 NSGG-RALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKPL  116 (126)
Q Consensus        78 ~~g~-~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~~  116 (126)
                      .+|. ++..+++.|...   +|++|+||+.+|..+|+|++...
T Consensus        89 ~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~~w~~~g~p~~~~~  131 (271)
T 1e0c_A           89 DEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSREL  131 (271)
T ss_dssp             SSSSHHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCCC
T ss_pred             CCCCccHHHHHHHHHHcCCCCeEEecCCHHHHHHcCCCccCCC
Confidence            9988 888888888877   79999999999999999998763

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}

Probab=99.91  E-value=2.3e-24  Score=135.73  Aligned_cols=102  Identities=27%  Similarity=0.377  Sum_probs=79.7

Q ss_pred             ceeCHHHHHHhh-h-CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHH----hh-----cCCCCeEE
Q 041947            6 ASVGVDTAKDLL-S-SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVA----SV-----CSKEDHII   74 (126)
Q Consensus         6 ~~i~~~~l~~~~-~-~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~----~~-----~~~~~~iv   74 (126)
                      ..|+++++.+++ + ++.+|||+|++.||..||||||+|||+..+...    ...+...+.    ..     ++++++||
T Consensus         1 ~~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~iv   76 (127)
T 3i2v_A            1 SRVSVTDYKRLLDSGAFHLLLDVRPQVEVDICRLPHALHIPLKHLERR----DAESLKLLKEAIWEEKQGTQEGAAVPIY   76 (127)
T ss_dssp             CEECHHHHHHHHHHTCCCEEEECSCHHHHHHCCCTTSEECCHHHHHTT----CHHHHHHHHHHHHHHHTTC---CCEEEE
T ss_pred             CCCCHHHHHHHHhCCCCeEEEECCCHHHhhheecCCceeCChHHHhhh----hhhhHHHHHHHHhhhcccccCCCCCeEE
Confidence            468999999999 4 369999999999999999999999999866532    122222221    11     23455999


Q ss_pred             EEeCCCchHHHHHHHHHhc---------CcceecccHHhHHhCCCC
Q 041947           75 VVCNSGGRALRACVDLRNA---------HVTKLEGGYSAWVDEGVA  111 (126)
Q Consensus        75 vyc~~g~~s~~~~~~l~~~---------~v~~l~gG~~~w~~~g~~  111 (126)
                      +||.+|.+|..++.+|.+.         +|++|.||+.+|.++..|
T Consensus        77 v~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~W~~~~~~  122 (127)
T 3i2v_A           77 VICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMAWAAKIDG  122 (127)
T ss_dssp             EECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHHHHHHHTCT
T ss_pred             EEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHHHHHHhcCC
Confidence            9999999999999998865         789999999999987655

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}

Probab=99.90  E-value=4.6e-24  Score=138.06  Aligned_cols=108  Identities=20%  Similarity=0.346  Sum_probs=85.1

Q ss_pred             CceeCHHHHHHhh-h-CCcEEEecCChhhhcc-cCC------CCccccccccccccCCCCChHHHHHHHhh-----cCCC
Q 041947            5 VASVGVDTAKDLL-S-SGHRFLDVRTTEEFNE-SHV------HGALNVPYLFITQEGRVKNPEFLTQVASV-----CSKE   70 (126)
Q Consensus         5 ~~~i~~~~l~~~~-~-~~~~iiDvR~~~e~~~-ghI------~ga~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~   70 (126)
                      +..|+++++.+++ + ++.+|||||++.||.. |||      |||+|||+.. .. .. ..+.+...+...     ++++
T Consensus         4 ~~~is~~el~~~l~~~~~~~liDVR~~~e~~~~ghi~~~g~~pgAv~ip~~~-~~-~~-~~~~~~~~l~~~l~~~~~~~~   80 (148)
T 2fsx_A            4 AGDITPLQAWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWAT-SD-GT-HNDNFLAELRDRIPADADQHE   80 (148)
T ss_dssp             SEEECHHHHHHHHHHCTTCEEEECSCHHHHHHTCEECCGGGTCCCEECCSBC-TT-SC-BCTTHHHHHHHHCC-------
T ss_pred             cccCCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCCccccCCCCcEEeeeec-cc-cc-cCHHHHHHHHHHHhhccCCCC
Confidence            4579999999998 3 6899999999999997 999      9999999976 11 11 123455555443     3788


Q ss_pred             CeEEEEeCCCchHHHHHHHHHhc---CcceecccH------------HhHHhCCCCCCCC
Q 041947           71 DHIIVVCNSGGRALRACVDLRNA---HVTKLEGGY------------SAWVDEGVAGDKP  115 (126)
Q Consensus        71 ~~ivvyc~~g~~s~~~~~~l~~~---~v~~l~gG~------------~~w~~~g~~~~~~  115 (126)
                      ++|||||.+|.+|..++..|...   +|++|.||+            .+|+++|+|++..
T Consensus        81 ~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~w~~~~g~~~~~~W~~~glp~~~~  140 (148)
T 2fsx_A           81 RPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFEGHLDAEGHRGATGWRAVGLPWRQG  140 (148)
T ss_dssp             CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTTCCCCTTSCCCSSSTTTTTCSEECC
T ss_pred             CEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChhhhhhhccccccccHHHcCCCCCcc
Confidence            99999999999999999999888   799999999            6888888888754

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.90  E-value=1.2e-23  Score=148.30  Aligned_cols=112  Identities=21%  Similarity=0.305  Sum_probs=94.3

Q ss_pred             CceeCHHHHHHhh-hCCcEEEecC----------ChhhhcccCCCCccccccccccccC-----C-CCChHHHHHHHhh-
Q 041947            5 VASVGVDTAKDLL-SSGHRFLDVR----------TTEEFNESHVHGALNVPYLFITQEG-----R-VKNPEFLTQVASV-   66 (126)
Q Consensus         5 ~~~i~~~~l~~~~-~~~~~iiDvR----------~~~e~~~ghI~ga~~i~~~~~~~~~-----~-~~~~~~~~~~~~~-   66 (126)
                      -..|+++++.+++ +++.+|||+|          ++.+|..||||||+|+|+..+....     . ...+.|...+... 
T Consensus         3 ~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~~~~~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~g   82 (280)
T 1urh_A            3 TWFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPETFAVAMRELG   82 (280)
T ss_dssp             CCEECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSSSSSSCCCCHHHHHHHHHHTT
T ss_pred             CceeeHHHHHHhcCCCCeEEEEeeccCCcccccchhhhhhhCcCCCCEECCHHHhcCCCCCCCCCCCCHHHHHHHHHHcC
Confidence            3579999999999 5789999999          7789999999999999998765421     2 2346677888776 


Q ss_pred             cCCCCeEEEEeCCCch-HHHHHHHHHhc---CcceecccHHhHHhCCCCCCCCc
Q 041947           67 CSKEDHIIVVCNSGGR-ALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKPL  116 (126)
Q Consensus        67 ~~~~~~ivvyc~~g~~-s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~~  116 (126)
                      ++++++|||||.+|.+ +..+++.|...   +|++|+||+.+|.++|+|+++..
T Consensus        83 i~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~  136 (280)
T 1urh_A           83 VNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEEGA  136 (280)
T ss_dssp             CCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBBSC
T ss_pred             CCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHHCCCcccCCC
Confidence            7889999999999988 77777777777   89999999999999999998763

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.90  E-value=3.4e-23  Score=145.42  Aligned_cols=108  Identities=14%  Similarity=0.282  Sum_probs=91.9

Q ss_pred             ceeCHHHHHHhh-hCCcEEEecCChhhhc--------ccCCCCcccccccccccc--CCCCChHHHHHHHhh-cCCCCeE
Q 041947            6 ASVGVDTAKDLL-SSGHRFLDVRTTEEFN--------ESHVHGALNVPYLFITQE--GRVKNPEFLTQVASV-CSKEDHI   73 (126)
Q Consensus         6 ~~i~~~~l~~~~-~~~~~iiDvR~~~e~~--------~ghI~ga~~i~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~i   73 (126)
                      ..|+++++.+.+ +++.+|||+|++.||.        .||||||+|+|+..+.+.  .....+++.+.+... ++++++|
T Consensus       147 ~~i~~~~l~~~l~~~~~~liDvR~~~e~~g~~~~~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i  226 (271)
T 1e0c_A          147 PTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEELGITPDKEI  226 (271)
T ss_dssp             TBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCGGGGEEGGGTTEECTTHHHHHHHTTCCTTSEE
T ss_pred             ccccHHHHHHHhcCCCcEEEEcCChhhcCCccCCCCcCCcCCCceeccHHHhCCCCCCCCCHHHHHHHHHHcCCCCCCCE
Confidence            467999999988 6679999999999999        999999999999877543  222336677777654 6889999


Q ss_pred             EEEeCCCchHHHHHHHHHhc---CcceecccHHhHHhC-CCCCC
Q 041947           74 IVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDE-GVAGD  113 (126)
Q Consensus        74 vvyc~~g~~s~~~~~~l~~~---~v~~l~gG~~~w~~~-g~~~~  113 (126)
                      |+||.+|.+|..++..|..+   +|++|.||+.+|.++ ++|++
T Consensus       227 vvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~~~~pv~  270 (271)
T 1e0c_A          227 VTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVE  270 (271)
T ss_dssp             EEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHHHTTCTTCCCB
T ss_pred             EEECCchHHHHHHHHHHHHcCCCCceeeCCcHHHHhcCCCCCCc
Confidence            99999999999999998887   799999999999998 99876

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}

Probab=99.90  E-value=1.2e-23  Score=133.32  Aligned_cols=104  Identities=27%  Similarity=0.430  Sum_probs=79.2

Q ss_pred             CCCceeCHHHHHHhhhCCcEEEecCChhhhcccCCCCccccccccccccCC----------------------CCChHHH
Q 041947            3 GDVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGR----------------------VKNPEFL   60 (126)
Q Consensus         3 ~~~~~i~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~----------------------~~~~~~~   60 (126)
                      ..+..|+++++.+  .++.+|||+|++.||..||||||+|||+..+.....                      ....++.
T Consensus         2 ~~~~~i~~~el~~--~~~~~iiDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (134)
T 3g5j_A            2 NAMSVIKIEKALK--LDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHEAIQKGFDYVSYKLKDIY   79 (134)
T ss_dssp             ---CEECHHHHTT--CTTEEEEECSCHHHHHHCCCTTCEECCSSCHHHHHHHHHHHHHHCHHHHHHHHHHHHGGGHHHHH
T ss_pred             CCccccCHHHHHh--cCCcEEEEcCCHHHHhcCCCCCCEEcCccchhhhhcccceeeecChhHHHhcccccccccHHHHH
Confidence            3577899999877  678999999999999999999999999964321000                      0002344


Q ss_pred             HHHHhhcCCC-CeEEEEe-CCCchHHHHHHHHHhc--CcceecccHHhHHhCC
Q 041947           61 TQVASVCSKE-DHIIVVC-NSGGRALRACVDLRNA--HVTKLEGGYSAWVDEG  109 (126)
Q Consensus        61 ~~~~~~~~~~-~~ivvyc-~~g~~s~~~~~~l~~~--~v~~l~gG~~~w~~~g  109 (126)
                      ..+... +++ ++||+|| .+|.+|..++..|...  +|++|.||+.+|++..
T Consensus        80 ~~~~~~-~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~W~~~~  131 (134)
T 3g5j_A           80 LQAAEL-ALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKAYRNFV  131 (134)
T ss_dssp             HHHHHH-HTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHHHHHHH
T ss_pred             HHHHHh-ccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHHHHHHh
Confidence            444443 567 9999999 5899999999999888  8999999999998753

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.89  E-value=3.1e-23  Score=148.93  Aligned_cols=111  Identities=14%  Similarity=0.211  Sum_probs=91.8

Q ss_pred             CceeCHHHHHHhh-hCCcEEEecCChhh-hcccCCCCccccccccccc---cC-CCCChHHHHHHHhh-cCCCCeEEEEe
Q 041947            5 VASVGVDTAKDLL-SSGHRFLDVRTTEE-FNESHVHGALNVPYLFITQ---EG-RVKNPEFLTQVASV-CSKEDHIIVVC   77 (126)
Q Consensus         5 ~~~i~~~~l~~~~-~~~~~iiDvR~~~e-~~~ghI~ga~~i~~~~~~~---~~-~~~~~~~~~~~~~~-~~~~~~ivvyc   77 (126)
                      ...|+++++.+++ +++++|||+|+..+ |..||||||+|||+.....   .. ....++|..++... ++++++|||||
T Consensus        39 ~~~is~~~l~~~l~~~~~~iiDvR~~~e~y~~gHIpGAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~lgi~~~~~vVvyc  118 (318)
T 3hzu_A           39 ERLVTADWLSAHMGAPGLAIVESDEDVLLYDVGHIPGAVKIDWHTDLNDPRVRDYINGEQFAELMDRKGIARDDTVVIYG  118 (318)
T ss_dssp             GGEECHHHHHHHTTCTTEEEEECCSSTTSGGGCBCTTEEECCHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             CceecHHHHHHhccCCCEEEEECCCChhHHhcCcCCCCeEeCchhhhccCcccCCCCHHHHHHHHHHcCCCCCCeEEEEC
Confidence            3469999999999 67899999999887 9999999999999753221   11 22335788888887 78999999999


Q ss_pred             CCCc-hHHHHHHHHHhc---CcceecccHHhHHhCCCCCCCC
Q 041947           78 NSGG-RALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        78 ~~g~-~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      .+|. ++..+++.|...   +|++|+||+.+|+++|+|+++.
T Consensus       119 ~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~  160 (318)
T 3hzu_A          119 DKSNWWAAYALWVFTLFGHADVRLLNGGRDLWLAERRETTLD  160 (318)
T ss_dssp             SGGGHHHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBCC
T ss_pred             CCCCccHHHHHHHHHHcCCCceEEccCCHHHHhhcCCCcccC
Confidence            9887 788877777776   7999999999999999999875

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A

Probab=99.89  E-value=1.4e-23  Score=133.71  Aligned_cols=112  Identities=15%  Similarity=0.222  Sum_probs=90.3

Q ss_pred             CCceeCHHHHHHhh--hCCcEEEecCChhhhcc-cCC------CCccccccccccccCCCCChHHHHHHHhhc--CCCCe
Q 041947            4 DVASVGVDTAKDLL--SSGHRFLDVRTTEEFNE-SHV------HGALNVPYLFITQEGRVKNPEFLTQVASVC--SKEDH   72 (126)
Q Consensus         4 ~~~~i~~~~l~~~~--~~~~~iiDvR~~~e~~~-ghI------~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~   72 (126)
                      ....|+++++.+++  +++.+|||||++.||.. +|+      |||+|||+..+.      ...|...+...+  +++++
T Consensus         3 ~~~~is~~e~~~~l~~~~~~~liDVR~~~E~~~~~~~~~~g~~~ga~~ip~~~~~------~~~~~~~l~~~~~~~~~~~   76 (134)
T 1vee_A            3 SGSSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGED------KPGFLKKLSLKFKDPENTT   76 (134)
T ss_dssp             CSCBCCHHHHHHHHHHCTTEEEEECSCHHHHHHTCEECCTTTSCCCEECCCCGGG------HHHHHHHHHTTCSCGGGCE
T ss_pred             CCCccCHHHHHHHHHhCCCeEEEEcCCHHHHhhcCCCcccccCCceEEeeccccc------ChhHHHHHHHHhCCCCCCE
Confidence            35679999999988  35789999999999986 343      799999986542      234555555443  67899


Q ss_pred             EEEEeCCCchHHHHHHHHHhc---CcceecccH---HhHHhCCCCCCCCcccccc
Q 041947           73 IIVVCNSGGRALRACVDLRNA---HVTKLEGGY---SAWVDEGVAGDKPLEELKI  121 (126)
Q Consensus        73 ivvyc~~g~~s~~~~~~l~~~---~v~~l~gG~---~~w~~~g~~~~~~~~~~~~  121 (126)
                      |||||.+|.||..++..|..+   +|+.+.||+   .+|.++|+|++.+...+++
T Consensus        77 ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~~~~~W~~~g~p~~~~~~~~~~  131 (134)
T 1vee_A           77 LYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLPWIEPKKTSGP  131 (134)
T ss_dssp             EEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTTSTTSSGGGTCCEECCCCCCCC
T ss_pred             EEEEeCCCCcHHHHHHHHHHcCCcceEEecCCccCCcchhhcCCCCCCCCCCCCC
Confidence            999999999999999999888   799999999   7899999999887555544

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.88  E-value=1.7e-22  Score=142.46  Aligned_cols=109  Identities=28%  Similarity=0.413  Sum_probs=83.0

Q ss_pred             ceeCHHHHHHhh-hCCcEEEecCChhhh-----------cccCCCCccccccccccccCCCCCh-HHHHHHHhh-cCCCC
Q 041947            6 ASVGVDTAKDLL-SSGHRFLDVRTTEEF-----------NESHVHGALNVPYLFITQEGRVKNP-EFLTQVASV-CSKED   71 (126)
Q Consensus         6 ~~i~~~~l~~~~-~~~~~iiDvR~~~e~-----------~~ghI~ga~~i~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~   71 (126)
                      ..|+++++.+.+ +++.+|||+|++.||           ..||||||+|||+..+...+.+.+. ++...+... +++++
T Consensus       152 ~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~ghIpgA~nip~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  231 (280)
T 1urh_A          152 AVVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSYDK  231 (280)
T ss_dssp             GBCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCGGGGBSSSSBCCHHHHHHHHHTTTCCSSS
T ss_pred             cEEcHHHHHHHhcCCCcEEEeCCchhhcccccCCCCCCCcCccCCCceEeeHHHhhcCCccCCHHHHHHHHHHcCCCCCC
Confidence            458999999998 678999999999999           6899999999999887654444333 444444433 67899


Q ss_pred             eEEEEeCCCchHHHHHHHHHhc---CcceecccHHhHHh-CCCCCCC
Q 041947           72 HIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVD-EGVAGDK  114 (126)
Q Consensus        72 ~ivvyc~~g~~s~~~~~~l~~~---~v~~l~gG~~~w~~-~g~~~~~  114 (126)
                      +||+||.+|.+|..++..|..+   +|++|.||+.+|.. .++|++.
T Consensus       232 ~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~Pv~~  278 (280)
T 1urh_A          232 PIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEWGARADLPVEP  278 (280)
T ss_dssp             CEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC-----------
T ss_pred             CEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHHHhcCCCCCcee
Confidence            9999999999999999999888   79999999999987 5888764

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.88  E-value=2.8e-22  Score=142.51  Aligned_cols=111  Identities=26%  Similarity=0.337  Sum_probs=90.2

Q ss_pred             CceeCHHHHHHhh-h----CCcEEEecC--------ChhhhcccCCCCcccccccccccc-----CCCC-ChHHHHHHHh
Q 041947            5 VASVGVDTAKDLL-S----SGHRFLDVR--------TTEEFNESHVHGALNVPYLFITQE-----GRVK-NPEFLTQVAS   65 (126)
Q Consensus         5 ~~~i~~~~l~~~~-~----~~~~iiDvR--------~~~e~~~ghI~ga~~i~~~~~~~~-----~~~~-~~~~~~~~~~   65 (126)
                      -..|+++++.+++ +    ++.+|||+|        ++.+|..||||||+|+|+..+...     ..++ .+.|...+..
T Consensus         7 ~~~is~~~l~~~l~~~~~~~~~~liDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~l~~   86 (296)
T 1rhs_A            7 RALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLPSEAGFADYVGS   86 (296)
T ss_dssp             CSEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTTSSSSSCCCCHHHHHHHHHH
T ss_pred             CceeeHHHHHHHHhccccCCCeEEEEecccCcCCcchhhhHhhCcCCCCEEeCHHHhcCCCCCCCCCCCCHHHHHHHHHH
Confidence            4589999999999 4    578999999        688999999999999999866542     1222 3567777776


Q ss_pred             h-cCCCCeEEEEeCC--Cch-HHHHHHHHHhc---CcceecccHHhHHhCCCCCCCC
Q 041947           66 V-CSKEDHIIVVCNS--GGR-ALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        66 ~-~~~~~~ivvyc~~--g~~-s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      . ++++++|||||.+  |.+ +..+++.|...   +|++|+||+.+|.++|+|++..
T Consensus        87 lgi~~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~  143 (296)
T 1rhs_A           87 LGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTSE  143 (296)
T ss_dssp             TTCCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCS
T ss_pred             cCCCCCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCHHHHHHcCCccccC
Confidence            5 7889999999998  777 55656566665   7999999999999999999876

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.88  E-value=1.7e-22  Score=142.29  Aligned_cols=111  Identities=22%  Similarity=0.296  Sum_probs=89.8

Q ss_pred             ceeCHHHHHHhh-hCCcEEEecCC-hhhhcccCCCCcccccccccccc---CC-CCChHHHHHHHhh-cCCCCeEEEEeC
Q 041947            6 ASVGVDTAKDLL-SSGHRFLDVRT-TEEFNESHVHGALNVPYLFITQE---GR-VKNPEFLTQVASV-CSKEDHIIVVCN   78 (126)
Q Consensus         6 ~~i~~~~l~~~~-~~~~~iiDvR~-~~e~~~ghI~ga~~i~~~~~~~~---~~-~~~~~~~~~~~~~-~~~~~~ivvyc~   78 (126)
                      ..|+++++.+++ +++.+|||+|+ +.+|..||||||+|||+..+...   .. ...+.|..++... ++++++|||||.
T Consensus         6 ~~is~~~l~~~l~~~~~~liDvR~~~~ey~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~vvvyc~   85 (277)
T 3aay_A            6 VLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGG   85 (277)
T ss_dssp             HEECHHHHHTTTTCTTEEEEEEESSSHHHHHCBSTTCEEEETTTTTBCSSSSSBCCHHHHHHHHHHHTCCTTSEEEEECS
T ss_pred             ceEcHHHHHHHhCCCCEEEEEcCCChhhHhhCCCCCcEEecccccccCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEECC
Confidence            579999999988 56789999998 89999999999999998754321   12 2234677777775 788999999999


Q ss_pred             CCc-hHHHHHHHHHhc---CcceecccHHhHHhCCCCCCCCc
Q 041947           79 SGG-RALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKPL  116 (126)
Q Consensus        79 ~g~-~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~~  116 (126)
                      +|. ++..+++.|..+   +|++|+||+.+|.++|+|++..+
T Consensus        86 ~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~  127 (277)
T 3aay_A           86 NNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSDP  127 (277)
T ss_dssp             GGGHHHHHHHHHHHHTTCCSEEEETTHHHHHHHTTCCCBCCC
T ss_pred             CCCchHHHHHHHHHHcCCCcEEEecCCHHHHHHcCCccccCC
Confidence            876 566666666666   89999999999999999998763

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.88  E-value=2.8e-22  Score=143.03  Aligned_cols=107  Identities=19%  Similarity=0.311  Sum_probs=90.4

Q ss_pred             ceeCHHHHHHhh-hCCcEEEecCChhhh-----------cccCCCCcccccccccccc-CCC-CChHHHHHHHhh-cCCC
Q 041947            6 ASVGVDTAKDLL-SSGHRFLDVRTTEEF-----------NESHVHGALNVPYLFITQE-GRV-KNPEFLTQVASV-CSKE   70 (126)
Q Consensus         6 ~~i~~~~l~~~~-~~~~~iiDvR~~~e~-----------~~ghI~ga~~i~~~~~~~~-~~~-~~~~~~~~~~~~-~~~~   70 (126)
                      ..++.+++.+.+ +++.+|||+|++.||           ..||||||+|||+..+... +.+ ..+++.+.+... ++++
T Consensus       175 ~~i~~~e~~~~~~~~~~~liDvR~~~ef~G~~~~p~~~~~~GhIpGAiniP~~~l~~~~~~~~~~~~l~~~~~~~~~~~~  254 (302)
T 3olh_A          175 FIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLS  254 (302)
T ss_dssp             GEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSTTCCCCCCTTCEECCGGGGBCSSSCBCCHHHHHHHHHHTTCCTT
T ss_pred             ceecHHHHHHhhcCCCcEEEecCCHHHccccccCCCcCCcCccCCCceecCHHHhcCCCCccCCHHHHHHHHHhcCCCCC
Confidence            468899999988 678999999999999           7899999999999887543 333 345566666654 6889


Q ss_pred             CeEEEEeCCCchHHHHHHHHHhc---CcceecccHHhHHhCCCCC
Q 041947           71 DHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDEGVAG  112 (126)
Q Consensus        71 ~~ivvyc~~g~~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~  112 (126)
                      ++||+||.+|.+|..++..|..+   +|++|+||+.+|.++++|.
T Consensus       255 ~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~~W~~~~~P~  299 (302)
T 3olh_A          255 KPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPE  299 (302)
T ss_dssp             SCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHHHHHHHHCCC
T ss_pred             CCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHHHHhhccCCC
Confidence            99999999999999988888777   8999999999999998874

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.88  E-value=9e-23  Score=144.15  Aligned_cols=112  Identities=19%  Similarity=0.259  Sum_probs=91.4

Q ss_pred             CCceeCHHHHHHhh-hCCcEEEecC-ChhhhcccCCCCccccccccccc---cCCC-CChHHHHHHHhh-cCCCCeEEEE
Q 041947            4 DVASVGVDTAKDLL-SSGHRFLDVR-TTEEFNESHVHGALNVPYLFITQ---EGRV-KNPEFLTQVASV-CSKEDHIIVV   76 (126)
Q Consensus         4 ~~~~i~~~~l~~~~-~~~~~iiDvR-~~~e~~~ghI~ga~~i~~~~~~~---~~~~-~~~~~~~~~~~~-~~~~~~ivvy   76 (126)
                      +...|+++++.+++ +++.+|||+| ++.+|..||||||+|+|+.....   ...+ ..+.|..++... ++++++||||
T Consensus         6 ~~~~is~~~l~~~l~~~~~~liDvR~~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~ivvy   85 (285)
T 1uar_A            6 PEVLVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAKLMERLGISNDTTVVLY   85 (285)
T ss_dssp             GGGEECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             CCceEcHHHHHHhcCCCCEEEEEcCCCcchhhcCcCCCCEECCchhhccCCcccCCCCHHHHHHHHHHcCCCCCCeEEEE
Confidence            34689999999998 5578999999 68999999999999999874222   1122 234677777776 7899999999


Q ss_pred             eCCCc-hHHHHHHHHHhc---CcceecccHHhHHhCCCCCCCC
Q 041947           77 CNSGG-RALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        77 c~~g~-~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      |.+|. ++..+++.|...   +|++|+||+.+|..+|+|++..
T Consensus        86 c~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~  128 (285)
T 1uar_A           86 GDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLTTE  128 (285)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCCCBCC
T ss_pred             CCCCCccHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCcccCC
Confidence            99888 677777777776   7999999999999999999875

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.87  E-value=3.1e-22  Score=142.28  Aligned_cols=110  Identities=16%  Similarity=0.308  Sum_probs=92.0

Q ss_pred             ceeCHHHHHHhh-hCCcEEEecCChhhh------------cccCCCCccccccccccc-cCCCCC-hHHHHHHHhh-cCC
Q 041947            6 ASVGVDTAKDLL-SSGHRFLDVRTTEEF------------NESHVHGALNVPYLFITQ-EGRVKN-PEFLTQVASV-CSK   69 (126)
Q Consensus         6 ~~i~~~~l~~~~-~~~~~iiDvR~~~e~------------~~ghI~ga~~i~~~~~~~-~~~~~~-~~~~~~~~~~-~~~   69 (126)
                      ..|+++++.+.+ +++.+|||+|++.||            ..||||||+|||+..+.. .+.+.+ +++...+... +++
T Consensus       160 ~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~~ghIpgA~nip~~~l~~~~~~~~~~~~l~~~~~~~~~~~  239 (296)
T 1rhs_A          160 LLKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELRAMFEAKKVDL  239 (296)
T ss_dssp             GEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCGGGGBCTTSCBCCHHHHHHHHHHTTCCT
T ss_pred             eEEcHHHHHHHhcCCCceEEeCCchhhcccccCCcccCCCcCccCCCCEeecHHHhcCCCCcCCCHHHHHHHHHHcCCCC
Confidence            578999999988 678999999999999            789999999999987754 233333 3455555543 678


Q ss_pred             CCeEEEEeCCCchHHHHHHHHHhc---CcceecccHHhHHh-CCCCCCCC
Q 041947           70 EDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVD-EGVAGDKP  115 (126)
Q Consensus        70 ~~~ivvyc~~g~~s~~~~~~l~~~---~v~~l~gG~~~w~~-~g~~~~~~  115 (126)
                      +++||+||.+|.+|..++..|..+   +|++|.||+.+|.. .++|++..
T Consensus       240 ~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~pv~~~  289 (296)
T 1rhs_A          240 TKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPETWVS  289 (296)
T ss_dssp             TSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHHHHHHSCGGGEEB
T ss_pred             CCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHHHHhcCCCCCcccC
Confidence            999999999999999999999887   79999999999998 89998765

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*

Probab=99.87  E-value=9.1e-23  Score=134.74  Aligned_cols=115  Identities=16%  Similarity=0.233  Sum_probs=83.4

Q ss_pred             CCCceeCHHHHHHhh-hC-------CcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh-cC--CCC
Q 041947            3 GDVASVGVDTAKDLL-SS-------GHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV-CS--KED   71 (126)
Q Consensus         3 ~~~~~i~~~~l~~~~-~~-------~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~   71 (126)
                      ..++.|++++|.+++ .+       +++|||||+ .||..||||||+|||+..+..... ..+++...+... ++  ..+
T Consensus        28 ~~~~~Is~~eL~~~l~~~~~~~~~~~~~iIDVR~-~Ey~~GHIpGAiniP~~~l~~~~~-~l~~l~~~~~~~~~~~~~~~  105 (169)
T 3f4a_A           28 TNVKYLDPTELHRWMQEGHTTTLREPFQVVDVRG-SDYMGGHIKDGWHYAYSRLKQDPE-YLRELKHRLLEKQADGRGAL  105 (169)
T ss_dssp             CSEEEECHHHHHHHHHHTSCTTTCCCEEEEECCS-TTCTTCEETTCEECCHHHHHHCHH-HHHHHHHHHHHHHHTSSSCE
T ss_pred             CCCcEeCHHHHHHHHhcCCccCcCCCEEEEECCc-hHHccCcCCCCEECCHHHhhcccc-cHHHHHHHHHhhcccccCCC
Confidence            357789999999999 32       489999999 999999999999999986643100 001122211111 11  247


Q ss_pred             eEEEEeCCC-chHHHHHHHHHhc---------CcceecccHHhHHhCCCCCCCCcccc
Q 041947           72 HIIVVCNSG-GRALRACVDLRNA---------HVTKLEGGYSAWVDEGVAGDKPLEEL  119 (126)
Q Consensus        72 ~ivvyc~~g-~~s~~~~~~l~~~---------~v~~l~gG~~~w~~~g~~~~~~~~~~  119 (126)
                      +|||||.+| .|+..++.+|.+.         +|++|.||+.+|.+++.+.+.-++.+
T Consensus       106 ~IVvyC~sG~~Rs~~aa~~l~~~L~~~G~~~~~V~~L~GG~~aW~~~~~~~~~~~~~~  163 (169)
T 3f4a_A          106 NVIFHCMLSQQRGPSAAMLLLRSLDTAELSRCRLWVLRGGFSRWQSVYGDDESVTAGY  163 (169)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHTCCHHHHTTEEEEEETTHHHHHHHHHTTCTTTEESC
T ss_pred             eEEEEeCCCCCcHHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHHHcCCcccccccc
Confidence            899999987 8888888777642         69999999999999988876654443

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.87  E-value=8e-22  Score=140.68  Aligned_cols=110  Identities=20%  Similarity=0.280  Sum_probs=88.7

Q ss_pred             ceeCHHHHHHhh-hC----CcEEEecC---------ChhhhcccCCCCccccccccccccC-----C-CCChHHHHHHHh
Q 041947            6 ASVGVDTAKDLL-SS----GHRFLDVR---------TTEEFNESHVHGALNVPYLFITQEG-----R-VKNPEFLTQVAS   65 (126)
Q Consensus         6 ~~i~~~~l~~~~-~~----~~~iiDvR---------~~~e~~~ghI~ga~~i~~~~~~~~~-----~-~~~~~~~~~~~~   65 (126)
                      ..|+++++.+++ ++    +++|||+|         ++.+|..||||||+|||++.+.+..     . ...+.|..++.+
T Consensus        22 ~lIs~~~l~~~l~~~~~~~~~~ilDvR~~~~~~~~~~~~ey~~gHIpGAi~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~  101 (302)
T 3olh_A           22 SMVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFFDIDQCSDRTSPYDHMLPGAEHFAEYAGR  101 (302)
T ss_dssp             CEECHHHHHHHHHCCCSSCCEEEEECCCCCCC--CCHHHHHHHSCCTTCEECCTTTSSCSSCSSSSCCCCHHHHHHHHHH
T ss_pred             CccCHHHHHHHhcCcCCCCCEEEEEeecCCCccCcccHHHHhhCcCCCCeEeCHHHhcCcCCCCCCCCCCHHHHHHHHHH
Confidence            579999999999 43    89999999         7889999999999999997654321     1 233568888888


Q ss_pred             h-cCCCCeEEEEeCC--C-chHHHHHHHHHhc---CcceecccHHhHHhCCCCCCCC
Q 041947           66 V-CSKEDHIIVVCNS--G-GRALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        66 ~-~~~~~~ivvyc~~--g-~~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      + ++++++|||||.+  + .+++.+++.|...   +|++|+||+.+|..+|+|++..
T Consensus       102 lgi~~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~  158 (302)
T 3olh_A          102 LGVGAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPLSSG  158 (302)
T ss_dssp             TTCCSSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHSCCC-CCS
T ss_pred             cCCCCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCHHHHHHcCCCcccC
Confidence            7 6899999999964  3 3577766667766   7999999999999999999876

>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}

Probab=99.87  E-value=4.7e-22  Score=139.33  Aligned_cols=99  Identities=18%  Similarity=0.263  Sum_probs=85.0

Q ss_pred             CCceeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh--cCCCCeEEEEeCCC
Q 041947            4 DVASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV--CSKEDHIIVVCNSG   80 (126)
Q Consensus         4 ~~~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivvyc~~g   80 (126)
                      ....|+++++.+++ +++++|||+|++.||..||||||+|+|+..+.        ++..++...  .+++++||+||.+|
T Consensus       120 ~~~~Is~~el~~ll~~~~~vlIDVR~~~Ey~~GHIpGAiniP~~~~~--------~~~~~l~~~l~~~kdk~IVvyC~~G  191 (265)
T 4f67_A          120 AGTYLSPEEWHQFIQDPNVILLDTRNDYEYELGTFKNAINPDIENFR--------EFPDYVQRNLIDKKDKKIAMFCTGG  191 (265)
T ss_dssp             TTCEECHHHHHHHTTCTTSEEEECSCHHHHHHEEETTCBCCCCSSGG--------GHHHHHHHHTGGGTTSCEEEECSSS
T ss_pred             CCceECHHHHHHHhcCCCeEEEEeCCchHhhcCcCCCCEeCCHHHHH--------hhHHHHHHhhhhCCCCeEEEEeCCC
Confidence            46789999999999 67899999999999999999999999997664        444544433  26789999999999


Q ss_pred             chHHHHHHHHHhc---CcceecccHHhHHhCCC
Q 041947           81 GRALRACVDLRNA---HVTKLEGGYSAWVDEGV  110 (126)
Q Consensus        81 ~~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~  110 (126)
                      .+|..++.+|...   +|+.|.||+.+|.++..
T Consensus       192 ~RS~~Aa~~L~~~Gf~nV~~L~GGi~aW~~~~~  224 (265)
T 4f67_A          192 IRCEKTTAYMKELGFEHVYQLHDGILNYLESIP  224 (265)
T ss_dssp             HHHHHHHHHHHHHTCSSEEEETTHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHcCCCCEEEecCHHHHHHHhcC
Confidence            9999999999888   89999999999998643

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.87  E-value=3.5e-22  Score=146.20  Aligned_cols=110  Identities=16%  Similarity=0.201  Sum_probs=90.1

Q ss_pred             CceeCHHHHHHhhhCCcEEEecCC--------hhhhcccCCCCcccccccc-cccc-------CC-CCChHHHHHHHhh-
Q 041947            5 VASVGVDTAKDLLSSGHRFLDVRT--------TEEFNESHVHGALNVPYLF-ITQE-------GR-VKNPEFLTQVASV-   66 (126)
Q Consensus         5 ~~~i~~~~l~~~~~~~~~iiDvR~--------~~e~~~ghI~ga~~i~~~~-~~~~-------~~-~~~~~~~~~~~~~-   66 (126)
                      ...|+++++.++++. .+|||+|+        +.+|..||||||+|||+.. +...       .. ...+.|..++... 
T Consensus        13 ~~~Is~~el~~~l~~-~~iIDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~~l~~~~~~~~~~~~lp~~~~f~~~l~~~g   91 (373)
T 1okg_A           13 KVFLDPSEVADHLAE-YRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPXAEFIDWCMANG   91 (373)
T ss_dssp             CCEECHHHHTTCGGG-SEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCTTCCCSSCCCCHHHHHHHHHHTT
T ss_pred             CcEEcHHHHHHHcCC-cEEEEecCCccccccchhHHhhCcCCCCEEeCchhhhhcccccCCccccCCCHHHHHHHHHHcC
Confidence            678999999998855 99999998        6899999999999999986 6432       12 2335677777755 


Q ss_pred             cCCCCeEEEEe-CCCchHH-HHHHHHHhc--CcceecccHHhHHhCCCCCCCC
Q 041947           67 CSKEDHIIVVC-NSGGRAL-RACVDLRNA--HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        67 ~~~~~~ivvyc-~~g~~s~-~~~~~l~~~--~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      ++++++||||| .+|.+++ .+++.|...  +|++|+||+.+|.++|+|++..
T Consensus        92 i~~d~~VVvYc~~~G~rsa~ra~~~L~~~G~~V~~L~GG~~aW~~~g~pv~~~  144 (373)
T 1okg_A           92 MAGELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQACKAAGLEMESG  144 (373)
T ss_dssp             CSSSSCEEEECSSTTTTTHHHHHHHHHHHTCCEEEETTTTHHHHTTTCCEECS
T ss_pred             CCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCCHHHHHhhcCCcccC
Confidence            78899999999 7777887 666556655  8999999999999999998876

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A

Probab=99.87  E-value=1.5e-22  Score=119.50  Aligned_cols=76  Identities=32%  Similarity=0.548  Sum_probs=65.5

Q ss_pred             CcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh-cCCCCeEEEEeCCCchHHHHHHHHHhc---Cc
Q 041947           20 GHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV-CSKEDHIIVVCNSGGRALRACVDLRNA---HV   95 (126)
Q Consensus        20 ~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivvyc~~g~~s~~~~~~l~~~---~v   95 (126)
                      +.+|||+|++.||..||||||+|+|+.           ++...+... ++++++||+||.+|.+|..++..|.+.   +|
T Consensus         1 ~~~liDvR~~~e~~~ghIpgA~~ip~~-----------~l~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v   69 (85)
T 2jtq_A            1 AEHWIDVRVPEQYQQEHVQGAINIPLK-----------EVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHV   69 (85)
T ss_dssp             CEEEEECSCHHHHTTEEETTCEECCHH-----------HHHHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSE
T ss_pred             CCEEEECCCHHHHHhCCCCCCEEcCHH-----------HHHHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCE
Confidence            468999999999999999999999996           344455554 478899999999999999999999988   78


Q ss_pred             ceecccHHhHHh
Q 041947           96 TKLEGGYSAWVD  107 (126)
Q Consensus        96 ~~l~gG~~~w~~  107 (126)
                      +++ ||+.+|..
T Consensus        70 ~~l-GG~~~w~~   80 (85)
T 2jtq_A           70 ENA-GGLKDIAM   80 (85)
T ss_dssp             EEE-EETTTCCS
T ss_pred             Eec-cCHHHHhc
Confidence            888 99999954

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.87  E-value=1.4e-21  Score=138.10  Aligned_cols=110  Identities=24%  Similarity=0.408  Sum_probs=90.2

Q ss_pred             ceeCHHHHHHhhh----CCcEEEecCChhhhc----------------ccCCCCcccccccccccc-CCCCC-hHHHHHH
Q 041947            6 ASVGVDTAKDLLS----SGHRFLDVRTTEEFN----------------ESHVHGALNVPYLFITQE-GRVKN-PEFLTQV   63 (126)
Q Consensus         6 ~~i~~~~l~~~~~----~~~~iiDvR~~~e~~----------------~ghI~ga~~i~~~~~~~~-~~~~~-~~~~~~~   63 (126)
                      ..|+++++.+.+.    ++..|||+|++.||.                .||||||+|||+..+.+. +.+.+ +++...+
T Consensus       146 ~~i~~~el~~~l~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~  225 (285)
T 1uar_A          146 IRAYRDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAEELRALY  225 (285)
T ss_dssp             GEECHHHHHHHHHHHHTTSEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHH
T ss_pred             eEEcHHHHHHHHhhcccCCCcEEEcCCccceeeeccccccccccccccCCcCCCccccCHHHhcCCCCcCCCHHHHHHHH
Confidence            3599999999883    666899999999997                799999999999876542 33333 4455556


Q ss_pred             Hhh-cCCCCeEEEEeCCCchHHHHHHHHH-hc---CcceecccHHhHH-hCCCCCCCC
Q 041947           64 ASV-CSKEDHIIVVCNSGGRALRACVDLR-NA---HVTKLEGGYSAWV-DEGVAGDKP  115 (126)
Q Consensus        64 ~~~-~~~~~~ivvyc~~g~~s~~~~~~l~-~~---~v~~l~gG~~~w~-~~g~~~~~~  115 (126)
                      ... ++++++||+||.+|.+|..++..|. .+   +|++|+||+.+|. .+|+|++..
T Consensus       226 ~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~~W~~~~g~pv~~g  283 (285)
T 1uar_A          226 EPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVPIAKG  283 (285)
T ss_dssp             GGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTTCCCBCS
T ss_pred             HHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHHHHhcCCCCCcccC
Confidence            554 6889999999999999999888888 66   8999999999998 799998764

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}

Probab=99.87  E-value=5.3e-22  Score=128.96  Aligned_cols=106  Identities=17%  Similarity=0.237  Sum_probs=78.1

Q ss_pred             CCceeCHHHHHHhhh-----CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEe-
Q 041947            4 DVASVGVDTAKDLLS-----SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVC-   77 (126)
Q Consensus         4 ~~~~i~~~~l~~~~~-----~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc-   77 (126)
                      .+..|+++++.++++     ++.+|||+|++ ||..||||||+|||+..+....   -+++...+..  ...+.||+|| 
T Consensus         3 ~~~~Is~~el~~~l~~~~~~~~~~lIDvR~~-ey~~gHIpGAinip~~~l~~~~---~~~l~~~l~~--~~~~~vV~yC~   76 (152)
T 2j6p_A            3 NYTYIKPEELVELLDNPDSLVKAAVIDCRDS-DRDCGFIVNSINMPTISCTEEM---YEKLAKTLFE--EKKELAVFHCA   76 (152)
T ss_dssp             CCEEECHHHHHHHHHSHHHHHTEEEEECCST-TGGGCBCTTCEECCTTTCCHHH---HHHHHHHHHH--TTCCEEEEECS
T ss_pred             CcCccCHHHHHHHHhCCCCCCCEEEEEcCcH-HhCcCcCCCcEECChhHhhHHH---HHHHHHHhcc--cCCCEEEEEcC
Confidence            567899999999984     37899999999 9999999999999997653210   0112222221  2344577789 


Q ss_pred             CCCchHHHHH----HHHHhc-----CcceecccHHhHHhCCCCCCCC
Q 041947           78 NSGGRALRAC----VDLRNA-----HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        78 ~~g~~s~~~~----~~l~~~-----~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      .+|.++..++    ..|.+.     +|++|.||+.+|.+++.++..+
T Consensus        77 ~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~~W~~~g~~~~~~  123 (152)
T 2j6p_A           77 QSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEAFYHMYGDVRPD  123 (152)
T ss_dssp             SSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHHHHHHHHTTTCGG
T ss_pred             CCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHcCCCCCC
Confidence            6899988877    333333     5889999999999999887754

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}

Probab=99.86  E-value=6.1e-22  Score=135.28  Aligned_cols=102  Identities=26%  Similarity=0.374  Sum_probs=78.4

Q ss_pred             CCCceeCHHHHHHhh-hC------CcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh--c--CCCC
Q 041947            3 GDVASVGVDTAKDLL-SS------GHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV--C--SKED   71 (126)
Q Consensus         3 ~~~~~i~~~~l~~~~-~~------~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~   71 (126)
                      ..+..|+++++.+++ ++      +++|||||++.||..||||||+|||..+          .+...+...  +  ++++
T Consensus        54 ~~~~~Is~~eL~~~l~~~~~~~~~~~~lIDVR~~~Ey~~GHIpGAinIP~~~----------~l~~~l~~~~~~~~~~~k  123 (216)
T 3op3_A           54 QDLKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGALNLYSQE----------ELFNFFLKKPIVPLDTQK  123 (216)
T ss_dssp             SSSEEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTSEETTCEECCSHH----------HHHHHHTSSCCCCSSTTS
T ss_pred             CCCCEeCHHHHHHHHhCCCccccCCEEEEEeCcHHHHhcCCccCCEECChHH----------HHHHHHhhccccccccCC
Confidence            357889999999999 33      6899999999999999999999999852          222333221  1  2344


Q ss_pred             --eEEEEeC-CCchHHHHHHHHHhc-------------CcceecccHHhHHhCCCCCCC
Q 041947           72 --HIIVVCN-SGGRALRACVDLRNA-------------HVTKLEGGYSAWVDEGVAGDK  114 (126)
Q Consensus        72 --~ivvyc~-~g~~s~~~~~~l~~~-------------~v~~l~gG~~~w~~~g~~~~~  114 (126)
                        .||+||. +|.|+..++.+|...             +|++|.||+.+|.++...+..
T Consensus       124 ~~~VVvyC~~SG~Rs~~aa~~L~~~~~~~~~y~~lGf~~V~~L~GG~~aW~~~~~~lce  182 (216)
T 3op3_A          124 RIIIVFHCEFSSERGPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDFFPEYMELCE  182 (216)
T ss_dssp             EEEEEEECCC--CCHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGGEE
T ss_pred             CCEEEEEeCCCChHHHHHHHHHHHcCcccccccccCCCcEEEECCcHHHHHHhCccccc
Confidence              4999999 999999999988863             799999999999987555543

>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}

Probab=99.86  E-value=2.7e-22  Score=128.17  Aligned_cols=110  Identities=18%  Similarity=0.175  Sum_probs=75.5

Q ss_pred             ceeCHHHHHH--------hh-hCCcEEEecCChhhhcccCCCCcccccccccccc-CC-CCChHHHHHHHhh-c-C----
Q 041947            6 ASVGVDTAKD--------LL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQE-GR-VKNPEFLTQVASV-C-S----   68 (126)
Q Consensus         6 ~~i~~~~l~~--------~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~-~~-~~~~~~~~~~~~~-~-~----   68 (126)
                      ..|+++++.+        .+ +++.+|||+|++.||..||||||+|+|+..+... .. .....+...+... . .    
T Consensus         1 k~Is~~~l~~~l~~~~~~~l~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (142)
T 2ouc_A            1 KIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKDSFKR   80 (142)
T ss_dssp             CEECHHHHHHHHHC----------CEEEECSCHHHHHHEEETTCEECCCSSHHHHHHHHTTSSCHHHHHHTTSCTTHHHH
T ss_pred             CccCHHHHHHHHHhcccccCCCCCCEEEEeCCHHHhhhhhccCccccCccHHHHHHHhhcCCcchhhhCCChhhhHHHhc
Confidence            3689999998        66 5578999999999999999999999999764321 00 0011111111100 0 0    


Q ss_pred             -CCCeEEEEeCCCchH---------HHHHHHHHhc--CcceecccHHhHHhCCCCCCCC
Q 041947           69 -KEDHIIVVCNSGGRA---------LRACVDLRNA--HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        69 -~~~~ivvyc~~g~~s---------~~~~~~l~~~--~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                       .+++||+||.+|.++         ..++..|...  +|++|+||+.+|.++|.++..+
T Consensus        81 ~~~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~~~w~~~g~~~~~~  139 (142)
T 2ouc_A           81 IFSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLSSFKQNHENLCDN  139 (142)
T ss_dssp             HHHSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHHHHHTTTCGGGEEE
T ss_pred             cCCCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCHHHHHHHCHHhhcc
Confidence             268899999999875         3456666666  8999999999999999887654

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.86  E-value=2.8e-21  Score=147.14  Aligned_cols=101  Identities=24%  Similarity=0.329  Sum_probs=88.7

Q ss_pred             CCceeCHHHHHHhh-h-CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc-CCCCeEEEEeCCC
Q 041947            4 DVASVGVDTAKDLL-S-SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC-SKEDHIIVVCNSG   80 (126)
Q Consensus         4 ~~~~i~~~~l~~~~-~-~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ivvyc~~g   80 (126)
                      .+..|+++++.+++ + ++.+|||+|++.+|..||||||+|||++           +|..++.... +++++|||||.+|
T Consensus         5 ~~~~is~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAv~ip~~-----------~~~~~~~~l~~~~~~~iVvyc~~g   73 (539)
T 1yt8_A            5 QIAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLS-----------RLELEIHARVPRRDTPITVYDDGE   73 (539)
T ss_dssp             -CEEECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCEECCGG-----------GHHHHHHHHSCCTTSCEEEECSSS
T ss_pred             cCcccCHHHHHHHHhCCCCeEEEECCCHHHHhcCcCCCCEECCHH-----------HHHHHHHhhCCCCCCeEEEEECCC
Confidence            46789999999999 3 4799999999999999999999999996           4556666664 5789999999999


Q ss_pred             chHHHHHHHHHhc---CcceecccHHhHHhCCCCCCCC
Q 041947           81 GRALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        81 ~~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      .++..+++.|...   +|++|+||+.+|+++|+|+++.
T Consensus        74 ~~s~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~  111 (539)
T 1yt8_A           74 GLAPVAAQRLHDLGYSDVALLDGGLSGWRNAGGELFRD  111 (539)
T ss_dssp             SHHHHHHHHHHHTTCSSEEEETTHHHHHHHTTCCCBCS
T ss_pred             ChHHHHHHHHHHcCCCceEEeCCCHHHHHhcCCCcccC
Confidence            9999999988888   8999999999999999999866

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A

Probab=99.86  E-value=1.5e-21  Score=132.99  Aligned_cols=103  Identities=22%  Similarity=0.388  Sum_probs=83.1

Q ss_pred             CCCceeCHHHHHHhhh-------CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHH--hhcC--CCC
Q 041947            3 GDVASVGVDTAKDLLS-------SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVA--SVCS--KED   71 (126)
Q Consensus         3 ~~~~~i~~~~l~~~~~-------~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~   71 (126)
                      ..+..|+++++.+++.       ++.+|||||++.||..||||||+|||+..+..          .++.  ..++  +++
T Consensus        41 ~~~~~Is~~el~~~l~~~~~~~~~~~~lIDvR~~~Ey~~gHIpGAinip~~~l~~----------~~~~~~~~l~~~~d~  110 (211)
T 1qb0_A           41 QDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAE----------SFLLKSPIAPCSLDK  110 (211)
T ss_dssp             TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHH----------HHHHTTTCCCSSTTS
T ss_pred             CCCCeeCHHHHHHHHhcccccCCCCEEEEECCCHHHHccCcCCCCEECCchHHHH----------HhhhhhhhccccCCC
Confidence            4678899999999983       37899999999999999999999999964321          1122  1233  678


Q ss_pred             eE--EEEeC-CCchHHHHHHHHHh----------c---CcceecccHHhHHhCCCCCCCC
Q 041947           72 HI--IVVCN-SGGRALRACVDLRN----------A---HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        72 ~i--vvyc~-~g~~s~~~~~~l~~----------~---~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      +|  |+||. +|.++..++..|.+          .   +|++|.||+.+|.+++.++..+
T Consensus       111 ~ivvVvyC~~sG~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~g~~~~~~  170 (211)
T 1qb0_A          111 RVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEP  170 (211)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGGEES
T ss_pred             CeEEEEECCCCCccHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHHHHHHHHCccccCC
Confidence            87  78899 99999999888874          3   8999999999999999988654

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1

Probab=99.86  E-value=7.6e-22  Score=129.10  Aligned_cols=102  Identities=20%  Similarity=0.358  Sum_probs=82.9

Q ss_pred             CCCceeCHHHHHHhhh-------CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHH-Hh--h-cCCCC
Q 041947            3 GDVASVGVDTAKDLLS-------SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQV-AS--V-CSKED   71 (126)
Q Consensus         3 ~~~~~i~~~~l~~~~~-------~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~-~~--~-~~~~~   71 (126)
                      ..+..|+++++.++++       ++.+|||+|++.||..||||||+|||+..+.           ... ..  . .++++
T Consensus        20 ~~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~~~-----------~~~~~~~~~~~~~~~   88 (161)
T 1c25_A           20 QDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEV-----------EDFLLKKPIVPTDGK   88 (161)
T ss_dssp             TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHH-----------HHHTTTSCCCCCTTS
T ss_pred             CCcceeCHHHHHHHHhccccccCCCeEEEECCChHHccCCcccCcEeCChhHHH-----------HHHHhhhhhccCCCC
Confidence            3567899999999993       3789999999999999999999999996432           211 11  1 25677


Q ss_pred             eE--EEEeC-CCchHHHHHHHHHh------------c-CcceecccHHhHHhCCCCCCCC
Q 041947           72 HI--IVVCN-SGGRALRACVDLRN------------A-HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        72 ~i--vvyc~-~g~~s~~~~~~l~~------------~-~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      +|  |+||. +|.++..++..|.+            . +|++|.||+.+|.+++.|+..+
T Consensus        89 ~ivvv~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~~W~~~~~~~~~~  148 (161)
T 1c25_A           89 RVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMKCQSYCEP  148 (161)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHHHGGGEES
T ss_pred             CeEEEEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHHHHHHHcccccCC
Confidence            76  67899 99999999998874            2 8999999999999999888765

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.86  E-value=3.6e-21  Score=138.23  Aligned_cols=108  Identities=21%  Similarity=0.387  Sum_probs=89.3

Q ss_pred             ceeCHHHHHHhhhCCcEEEecCChhhhcc----------------cCCCCccccccccccc-cCCCCC-hHHHHHHHhhc
Q 041947            6 ASVGVDTAKDLLSSGHRFLDVRTTEEFNE----------------SHVHGALNVPYLFITQ-EGRVKN-PEFLTQVASVC   67 (126)
Q Consensus         6 ~~i~~~~l~~~~~~~~~iiDvR~~~e~~~----------------ghI~ga~~i~~~~~~~-~~~~~~-~~~~~~~~~~~   67 (126)
                      ..++++++.+.+... +|||+|++.||..                ||||||+|||+..+.+ ++.+.+ +++...+ ..+
T Consensus       179 ~~i~~~el~~~l~~~-~liDvR~~~e~~~~~~~~~~~~~~~~~~~GhIpGA~niP~~~~~~~~g~~~~~~~l~~~~-~~l  256 (318)
T 3hzu_A          179 IRAFRDDVLAILGAQ-PLIDVRSPEEYTGKRTHMPDYPEEGALRAGHIPTAVHIPWGKAADESGRFRSREELERLY-DFI  256 (318)
T ss_dssp             TBCCHHHHHHHTTTS-CEEECSCHHHHHTSCSSCTTSCSCSCSSCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHT-TTC
T ss_pred             ccccHHHHHHhhcCC-eEEecCCHHHhcccccCccccccccCCcCcCCCCeeecCHHHhcCCCCcCCCHHHHHHHh-cCC
Confidence            467899999988554 9999999999998                9999999999986543 333434 3444444 446


Q ss_pred             CCCCeEEEEeCCCchHHHHHHHHHh-c---CcceecccHHhHHh-CCCCCCCC
Q 041947           68 SKEDHIIVVCNSGGRALRACVDLRN-A---HVTKLEGGYSAWVD-EGVAGDKP  115 (126)
Q Consensus        68 ~~~~~ivvyc~~g~~s~~~~~~l~~-~---~v~~l~gG~~~w~~-~g~~~~~~  115 (126)
                      +++++||+||.+|.+|..++..|.+ +   +|++|+||+.+|.. .++|+++.
T Consensus       257 ~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~~~W~~~~g~Pv~~g  309 (318)
T 3hzu_A          257 NPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWTEWGNAVRVPIVAG  309 (318)
T ss_dssp             CTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHHHHHTTSTTCCCBCS
T ss_pred             CCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcHHHHhcCCCCCcccC
Confidence            8899999999999999999999987 5   79999999999995 79999876

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A

Probab=99.86  E-value=5.5e-22  Score=128.74  Aligned_cols=110  Identities=18%  Similarity=0.188  Sum_probs=78.5

Q ss_pred             ceeCHHHHHHhhh---CCcEEEecCChhhhcccCCCCcccccccccccc----CCCCChHHH-HHHHh--hcCCCCeEEE
Q 041947            6 ASVGVDTAKDLLS---SGHRFLDVRTTEEFNESHVHGALNVPYLFITQE----GRVKNPEFL-TQVAS--VCSKEDHIIV   75 (126)
Q Consensus         6 ~~i~~~~l~~~~~---~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~----~~~~~~~~~-~~~~~--~~~~~~~ivv   75 (126)
                      +.|+++++.+++.   ++.+|||+|++.||..||||||+|||+..+...    +......+. .....  .++++++|||
T Consensus         4 ~~Is~~~l~~~l~~~~~~~~iiDvR~~~ey~~gHIpgAinip~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~iVv   83 (153)
T 2vsw_A            4 TQIVTERLVALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLITELIQHSAKHKVDIDCSQKVVV   83 (153)
T ss_dssp             EEECHHHHHHHHTSTTCCEEEEECSCHHHHHHCEETTCEECCCCHHHHHHHHTTSSCHHHHHHHSCSSCCCCCTTSEEEE
T ss_pred             ccccHHHHHHHHhcCCCCEEEEECCCHHHhccCccCCCeeeChHHHHHhhhhcCCcCHHHhcCchhhhhhccCCCCeEEE
Confidence            5799999999983   578999999999999999999999999755210    111111111 00001  1367899999


Q ss_pred             EeCCCchHHHH------HHHHH--h--c-CcceecccHHhHHhCCCCCCCC
Q 041947           76 VCNSGGRALRA------CVDLR--N--A-HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        76 yc~~g~~s~~~------~~~l~--~--~-~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      ||.+|.++..+      +..|.  .  . +|++|+||+.+|.+++.++...
T Consensus        84 yc~~g~~s~~a~~~~~~~~~L~~l~~G~~~v~~L~GG~~~W~~~~~~~~~~  134 (153)
T 2vsw_A           84 YDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEFSRCFPGLCEG  134 (153)
T ss_dssp             ECSSCCCGGGSCTTSHHHHHHHHHHHHCSCEEEETTHHHHHHHHCGGGEEC
T ss_pred             EeCCCCcccccccchHHHHHHHHHHhCCCcEEEEeChHHHHHHhChhhhcC
Confidence            99999887654      24443  2  2 8999999999999886666554

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.86  E-value=2.5e-21  Score=136.28  Aligned_cols=108  Identities=23%  Similarity=0.407  Sum_probs=87.1

Q ss_pred             eeCHHHHHHhhhCCcEEEecCChhhhcc----------------cCCCCccccccccccc-cCCCCC-hHHHHHHHhh-c
Q 041947            7 SVGVDTAKDLLSSGHRFLDVRTTEEFNE----------------SHVHGALNVPYLFITQ-EGRVKN-PEFLTQVASV-C   67 (126)
Q Consensus         7 ~i~~~~l~~~~~~~~~iiDvR~~~e~~~----------------ghI~ga~~i~~~~~~~-~~~~~~-~~~~~~~~~~-~   67 (126)
                      .++++++.+.+..+. |||+|++.||..                ||||||+|||+..+.. .+.+.+ +++...+... +
T Consensus       145 ~~~~~el~~~~~~~~-liDvR~~~e~~~~~~~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~  223 (277)
T 3aay_A          145 RAFRDEVLAAINVKN-LIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYADAGL  223 (277)
T ss_dssp             EECHHHHHHTTTTSE-EEECSCHHHHHTSCCC-----CCCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHHHHHTC
T ss_pred             hcCHHHHHHhcCCCC-EEEeCChHHeeeeecccccccccccccCCcCCCceecCHHHhcCCCCcCCCHHHHHHHHHHcCC
Confidence            378999999884333 999999999985                9999999999986543 233333 4566666654 6


Q ss_pred             CCCCeEEEEeCCCchHHHHHHHHHh-c---CcceecccHHhHHh-CCCCCCCC
Q 041947           68 SKEDHIIVVCNSGGRALRACVDLRN-A---HVTKLEGGYSAWVD-EGVAGDKP  115 (126)
Q Consensus        68 ~~~~~ivvyc~~g~~s~~~~~~l~~-~---~v~~l~gG~~~w~~-~g~~~~~~  115 (126)
                      +++++||+||.+|.+|..++..|.+ +   +|++|+||+.+|.. +|+|+++.
T Consensus       224 ~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~~W~~~~g~pv~~g  276 (277)
T 3aay_A          224 DNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIELG  276 (277)
T ss_dssp             CTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTTCCCBCC
T ss_pred             CCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchHHHHhcCCCCCCccC
Confidence            8899999999999999998888886 5   79999999999998 99998753

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A

Probab=99.85  E-value=2.5e-21  Score=128.20  Aligned_cols=103  Identities=21%  Similarity=0.356  Sum_probs=80.4

Q ss_pred             CCCceeCHHHHHHhhh-------CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHh--hcC--CCC
Q 041947            3 GDVASVGVDTAKDLLS-------SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVAS--VCS--KED   71 (126)
Q Consensus         3 ~~~~~i~~~~l~~~~~-------~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~   71 (126)
                      ..+..|+++++.++++       ++.+|||||++.||..||||||+|||+..+..          .++..  .++  +++
T Consensus        21 ~~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~ey~~ghIpgAinip~~~l~~----------~~~~~~~~~~~~~~~   90 (175)
T 2a2k_A           21 QDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAE----------SFLLKSPIAPCSLDK   90 (175)
T ss_dssp             TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHH----------HHHHSSCCCC----C
T ss_pred             CCCceeCHHHHHHHHhcccccCCCCEEEEECCCHHHHcCCcCCCcEECChhHHHH----------HhhhhhhhccccCCC
Confidence            3567899999999993       37899999999999999999999999964321          11221  223  678


Q ss_pred             eEEE--EeC-CCchHHHHHHHHHh----------c---CcceecccHHhHHhCCCCCCCC
Q 041947           72 HIIV--VCN-SGGRALRACVDLRN----------A---HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        72 ~ivv--yc~-~g~~s~~~~~~l~~----------~---~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      +|||  ||+ +|.+|..++..|.+          +   +|++|.||+.+|.+++.|+..+
T Consensus        91 ~ivvv~yC~~~g~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~~~~~~~~  150 (175)
T 2a2k_A           91 RVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEP  150 (175)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGGEES
T ss_pred             CeEEEEECCCCCCccHHHHHHHHHhhhhhhhhhhcCCceEEEEcCCHHHHHHHCccccCC
Confidence            8754  698 89999998888873          2   8999999999999999988544

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.85  E-value=3.9e-21  Score=132.21  Aligned_cols=96  Identities=25%  Similarity=0.391  Sum_probs=80.9

Q ss_pred             ceeCHHHHHHhhhCCcEEEecCChhhhcc----------cCCCCccccccccccccCCCCChHHHHHHHh-hcCCCCeEE
Q 041947            6 ASVGVDTAKDLLSSGHRFLDVRTTEEFNE----------SHVHGALNVPYLFITQEGRVKNPEFLTQVAS-VCSKEDHII   74 (126)
Q Consensus         6 ~~i~~~~l~~~~~~~~~iiDvR~~~e~~~----------ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv   74 (126)
                      ..|+++++.+    +.+|||+|++.||..          ||||||+|+|+..+....     +   .+.. .++++++||
T Consensus       121 ~~i~~~e~~~----~~~liDvR~~~e~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~-----e---~~~~~~~~~~~~iv  188 (230)
T 2eg4_A          121 WLLTADEAAR----HPLLLDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLELFLSPE-----G---LLERLGLQPGQEVG  188 (230)
T ss_dssp             GBCCHHHHHT----CSCEEECSCHHHHTTSCCCTTSSSCCBCTTCEECCGGGGGCCT-----T---HHHHHTCCTTCEEE
T ss_pred             ceeCHHHHhh----CCeEEeCCCHHHcCcccCCCCCccCCCCCCcEEcCHHHhCChH-----H---HHHhcCCCCCCCEE
Confidence            3577777766    789999999999999          999999999998775431     1   2222 357899999


Q ss_pred             EEeCCCchHHHHHHHHHhc--CcceecccHHhHHhCCCCCC
Q 041947           75 VVCNSGGRALRACVDLRNA--HVTKLEGGYSAWVDEGVAGD  113 (126)
Q Consensus        75 vyc~~g~~s~~~~~~l~~~--~v~~l~gG~~~w~~~g~~~~  113 (126)
                      +||.+|.+|..++..|..+  +|++|.||+.+|..+|+|++
T Consensus       189 ~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~~W~~~g~p~~  229 (230)
T 2eg4_A          189 VYCHSGARSAVAFFVLRSLGVRARNYLGSMHEWLQEGLPTE  229 (230)
T ss_dssp             EECSSSHHHHHHHHHHHHTTCEEEECSSHHHHHHHTTCCCB
T ss_pred             EEcCChHHHHHHHHHHHHcCCCcEEecCcHHHHhhcCCCCC
Confidence            9999999999999999888  89999999999999999976

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.85  E-value=1.2e-21  Score=147.02  Aligned_cols=99  Identities=28%  Similarity=0.529  Sum_probs=85.9

Q ss_pred             CCceeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCch
Q 041947            4 DVASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGR   82 (126)
Q Consensus         4 ~~~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~   82 (126)
                      ....++++++.+.+ +++.+|||+|++.||..||||||+|+|+.++.           ..+. .++++++||+||.+|.+
T Consensus       372 ~~~~i~~~~l~~~~~~~~~~lvDvR~~~e~~~ghIpgA~~ip~~~l~-----------~~~~-~l~~~~~vvv~C~~G~r  439 (474)
T 3tp9_A          372 SYANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIPLSKLA-----------AHIH-DVPRDGSVCVYCRTGGR  439 (474)
T ss_dssp             CCEEECHHHHHHTTTTTCCEEEECSCHHHHHHCBCTTCEECCHHHHT-----------TTGG-GSCSSSCEEEECSSSHH
T ss_pred             cccccCHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCHHHHH-----------HHHh-cCCCCCEEEEECCCCHH
Confidence            45679999999998 67899999999999999999999999997543           2222 25889999999999999


Q ss_pred             HHHHHHHHHhc---CcceecccHHhHHhCCCCCCC
Q 041947           83 ALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDK  114 (126)
Q Consensus        83 s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~  114 (126)
                      |..++..|...   +|++|+||+.+|.++|+|++.
T Consensus       440 a~~a~~~L~~~G~~~v~~~~Gg~~~W~~~g~p~~~  474 (474)
T 3tp9_A          440 SAIAASLLRAHGVGDVRNMVGGYEAWRGKGFPVEA  474 (474)
T ss_dssp             HHHHHHHHHHHTCSSEEEETTHHHHHHHTTCCCBC
T ss_pred             HHHHHHHHHHcCCCCEEEecChHHHHHhCCCCCCC
Confidence            99999888887   799999999999999999863

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.84  E-value=1.1e-20  Score=143.84  Aligned_cols=101  Identities=24%  Similarity=0.386  Sum_probs=89.2

Q ss_pred             CCCceeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCc
Q 041947            3 GDVASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGG   81 (126)
Q Consensus         3 ~~~~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~   81 (126)
                      ..+..|+++++.+.+ .++.+|||+|++.||..||||||+|+|..           ++...+.. ++++++||+||.+|.
T Consensus       374 ~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgA~~ip~~-----------~l~~~l~~-l~~~~~ivv~C~sG~  441 (539)
T 1yt8_A          374 PRADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRS-----------QLKQALER-LGTAERYVLTCGSSL  441 (539)
T ss_dssp             CCCCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCTTCEECCGG-----------GHHHHHHH-HCCCSEEEEECSSSH
T ss_pred             CcCCccCHHHHHHHhcCCCeEEEEeCCHHHhhcCcCCCchhCCHH-----------HHHHHHHh-CCCCCeEEEEeCCCh
Confidence            356789999999999 56899999999999999999999999986           34444444 388999999999999


Q ss_pred             hHHHHHHHHHhc---CcceecccHHhHHhCCCCCCCC
Q 041947           82 RALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        82 ~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      +|..++..|...   +|++|.||+.+|.++|+|+++.
T Consensus       442 rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~~  478 (539)
T 1yt8_A          442 LARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTEDG  478 (539)
T ss_dssp             HHHHHHHHHHHHHCSCEEEETTHHHHHHHTTCCCBCS
T ss_pred             HHHHHHHHHHHcCCCCEEEeCCcHHHHHhCCCCcccC
Confidence            999999999888   8999999999999999999876

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.84  E-value=7e-21  Score=141.21  Aligned_cols=110  Identities=19%  Similarity=0.255  Sum_probs=92.0

Q ss_pred             ceeCHHHHHHhhh---------CCcEEEecC--ChhhhcccCCCCcccccccccccc--C-CCCChHHHHHHHhh-cCCC
Q 041947            6 ASVGVDTAKDLLS---------SGHRFLDVR--TTEEFNESHVHGALNVPYLFITQE--G-RVKNPEFLTQVASV-CSKE   70 (126)
Q Consensus         6 ~~i~~~~l~~~~~---------~~~~iiDvR--~~~e~~~ghI~ga~~i~~~~~~~~--~-~~~~~~~~~~~~~~-~~~~   70 (126)
                      ..++++++.+++.         ++.+|||+|  ++.+|..||||||+|+|+..+...  . ....+++.+.+... ++++
T Consensus       124 ~~i~~~~l~~~~~~~~~~~~~~~~~~liDvR~~~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~l~~~~~~~gi~~~  203 (423)
T 2wlr_A          124 QLVYPQWLHDLQQGKEVTAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDTNEVESEPLWNKVSDEQLKAMLAKHGIRHD  203 (423)
T ss_dssp             GEECHHHHHHHHTTCCCTTCCSSCEEEEEEESSSCSHHHHCBCTTCEEEEGGGTEETTTTEECCHHHHHHHHHHTTCCTT
T ss_pred             cccCHHHHHHHhhccccccccCCCeEEEEecCCCchhhccCcCCCcEEcCHHHhccCCCCCCCCHHHHHHHHHHcCCCCC
Confidence            4688899988873         368999999  999999999999999999877541  2 23445666666654 6889


Q ss_pred             CeEEEEeCCCchHHHHHHHHHhc---CcceecccHHhHHhCCCCCCCC
Q 041947           71 DHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        71 ~~ivvyc~~g~~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      ++||+||.+|.+|..++..|..+   +|++|+||+.+|..+|+|++..
T Consensus       204 ~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~~W~~~g~pv~~g  251 (423)
T 2wlr_A          204 TTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQTWSDAGLPVERG  251 (423)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHHHHHHTTCCCBCS
T ss_pred             CeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHHHHhhCCCCcccC
Confidence            99999999999999988888877   7999999999999999999874

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.83  E-value=1.7e-20  Score=139.15  Aligned_cols=111  Identities=17%  Similarity=0.275  Sum_probs=89.9

Q ss_pred             ceeCHHHHHHhh-hCCcEEEecCChhhh-----------cccCCCCccccccc-------ccc-ccCCCCC-hHHHHHHH
Q 041947            6 ASVGVDTAKDLL-SSGHRFLDVRTTEEF-----------NESHVHGALNVPYL-------FIT-QEGRVKN-PEFLTQVA   64 (126)
Q Consensus         6 ~~i~~~~l~~~~-~~~~~iiDvR~~~e~-----------~~ghI~ga~~i~~~-------~~~-~~~~~~~-~~~~~~~~   64 (126)
                      ..|+.+++.+.+ .++.+|||+|++.||           ..||||||+|+|+.       .+. .++.+.+ +++...+.
T Consensus       272 ~~i~~~e~~~~l~~~~~~liDvR~~~e~~G~~~~~~~~~~~GhIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  351 (423)
T 2wlr_A          272 LMLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHAGSDSTHMEDFHNPDGTMRSADDITAMWK  351 (423)
T ss_dssp             GEECHHHHHTTTTCSSEEEEECSCHHHHHTSCCSSTTCCCCSEETTCEECCCCSSTTCCGGGBCTTSSBCCHHHHHHHHH
T ss_pred             heecHHHHHHHhcCCCceEEecCchhheeeeccCCCCCCcCCCCCCccccccccccccHHHHcCCCCcCCCHHHHHHHHH
Confidence            458999999988 567899999999999           88999999999875       221 1222323 35555554


Q ss_pred             h-hcCCCCeEEEEeCCCchHHHHHHHHHhc---CcceecccHHhHHh-CCCCCCCCc
Q 041947           65 S-VCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVD-EGVAGDKPL  116 (126)
Q Consensus        65 ~-~~~~~~~ivvyc~~g~~s~~~~~~l~~~---~v~~l~gG~~~w~~-~g~~~~~~~  116 (126)
                      . .++++++||+||.+|.||..++..|..+   +|++|.||+.+|.. .++|++...
T Consensus       352 ~~~~~~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~~~W~~~~~~Pv~~~~  408 (423)
T 2wlr_A          352 AWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGWYEWSSDPKNPVATGE  408 (423)
T ss_dssp             TTTCCTTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHHHHHTTSTTSCEECSS
T ss_pred             HcCCCCCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccHHHHhcCCCCCcccCC
Confidence            3 3688999999999999999999998887   79999999999998 899998763

>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1

Probab=99.82  E-value=8.7e-21  Score=123.05  Aligned_cols=104  Identities=21%  Similarity=0.199  Sum_probs=75.4

Q ss_pred             CCceeCHHHHHHhh-hC--CcEEEecCChhhhcccCCCCccccccccccc-----c-----CCCCChHHHHHHHhhcCCC
Q 041947            4 DVASVGVDTAKDLL-SS--GHRFLDVRTTEEFNESHVHGALNVPYLFITQ-----E-----GRVKNPEFLTQVASVCSKE   70 (126)
Q Consensus         4 ~~~~i~~~~l~~~~-~~--~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~   70 (126)
                      ....|+++++.+++ ++  +.+|||+|++.+|..||||||+|||+..+..     .     ..++.......+.. ++++
T Consensus        14 ~~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHIpgAinip~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~   92 (154)
T 1hzm_A           14 MAISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALFTRGEDRDRFTR-RCGT   92 (154)
T ss_dssp             CSSBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHTBCCSCCCTTTTSTTSHHHHHHHH-STTS
T ss_pred             cccccCHHHHHHHHhCCCCCEEEEEcCCHHHHhhccccCceEeCccHHHHhhhhcCcccHHHhCCCHHHHHHHhc-cCCC
Confidence            45688999999988 44  7999999999999999999999999976431     1     12222222333333 4678


Q ss_pred             CeEEEEeCCCchH------HHH-HHHHHh---c--CcceecccHHhHHhC
Q 041947           71 DHIIVVCNSGGRA------LRA-CVDLRN---A--HVTKLEGGYSAWVDE  108 (126)
Q Consensus        71 ~~ivvyc~~g~~s------~~~-~~~l~~---~--~v~~l~gG~~~w~~~  108 (126)
                      ++|||||.+|.++      +.+ ++.|..   .  +|++|+||+.+|..+
T Consensus        93 ~~iVvyc~~g~~~~~~~~aa~~~~~~l~~l~~~G~~v~~L~GG~~~W~~~  142 (154)
T 1hzm_A           93 DTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLEGGFSKFQAE  142 (154)
T ss_dssp             SCEEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTCCCEECCCCHHHHHHH
T ss_pred             CeEEEEeCCCCccccccccchHHHHHHHHHHHCCCceEEEcChHHHHHHH
Confidence            8999999988765      233 333332   2  689999999999875

>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}

Probab=99.80  E-value=1.5e-19  Score=117.95  Aligned_cols=106  Identities=19%  Similarity=0.280  Sum_probs=76.0

Q ss_pred             CCCceeCHHHHHHhhh---------CCcEEEecCChhhhcccCCCCcccccccccc-----ccCCCCChHHHHHHH----
Q 041947            3 GDVASVGVDTAKDLLS---------SGHRFLDVRTTEEFNESHVHGALNVPYLFIT-----QEGRVKNPEFLTQVA----   64 (126)
Q Consensus         3 ~~~~~i~~~~l~~~~~---------~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~-----~~~~~~~~~~~~~~~----   64 (126)
                      ..+..|+++++.++++         ++.+|||+|++.+|..||||||+|+|+..+.     ..+...   +...+.    
T Consensus         8 ~~~~~is~~el~~~l~~~~~~~~~~~~~~liDvR~~~e~~~ghI~ga~~i~~~~l~~~~~~~~~~~~---~~~~~~~~~~   84 (158)
T 3tg1_B            8 ASIKIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKIT---VLDLISCREG   84 (158)
T ss_dssp             ---CEECHHHHHHHHCC----------CEEEECSCHHHHHHCCBTTCEECCCSSHHHHHHHTTSSCC---HHHHTCCCCS
T ss_pred             CCCcEecHHHHHHHHHhcccccCCCCCEEEEEcCCHHHHHhCCCCCceeechhHHHHHhhhhcCccc---HHhhcCCHHH
Confidence            3578899999999984         3689999999999999999999999998653     111110   000000    


Q ss_pred             -hhc--CCCCeEEEEeCCCc---------hHHHHHHHHHhc--CcceecccHHhHHhCCCC
Q 041947           65 -SVC--SKEDHIIVVCNSGG---------RALRACVDLRNA--HVTKLEGGYSAWVDEGVA  111 (126)
Q Consensus        65 -~~~--~~~~~ivvyc~~g~---------~s~~~~~~l~~~--~v~~l~gG~~~w~~~g~~  111 (126)
                       ..+  ..+++|||||.+|.         ++..++..|...  +|++|.||+.+|..+.-.
T Consensus        85 ~~~~~~~~~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~~~W~~~~p~  145 (158)
T 3tg1_B           85 KDSFKRIFSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLSSFKQNHEN  145 (158)
T ss_dssp             SCSSTTTTTSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHHHHHTSSCGG
T ss_pred             HHHHhccCCCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcHHHHHHHhhh
Confidence             001  24789999999984         578888888877  899999999999876433

>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4

Probab=99.80  E-value=3.5e-19  Score=116.17  Aligned_cols=108  Identities=13%  Similarity=0.188  Sum_probs=73.3

Q ss_pred             CCCceeCHHHHHHhh-hC--CcEEEecCChhhhcccCCCCccccccccccccC-------CCCChHHHHHHHhhcCCCCe
Q 041947            3 GDVASVGVDTAKDLL-SS--GHRFLDVRTTEEFNESHVHGALNVPYLFITQEG-------RVKNPEFLTQVASVCSKEDH   72 (126)
Q Consensus         3 ~~~~~i~~~~l~~~~-~~--~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~   72 (126)
                      .....|+++++.+++ ++  +++|||||++.||..||||||+|||...+....       .++ +. ...+.....+.+.
T Consensus        17 ~~~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gAinip~~~l~~~~~~~~l~~~lp-~~-~~~l~~~~~~~~~   94 (157)
T 2gwf_A           17 RGSGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLP-DD-SKDTWKKRGNVEY   94 (157)
T ss_dssp             --CCEECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCEECCGGGCCTTCCHHHHHHTSC-HH-HHHHHHTTTTSSE
T ss_pred             CCCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhcCccCCcccCHHHcCCCCcHHHHHHHcC-HH-HHHHHHhcCCCCE
Confidence            356789999999988 44  789999999999999999999999997654211       111 11 1111122234556


Q ss_pred             EEEEeCCCch----HHHHHHHHH----h------c--CcceecccHHhHHhCCCCCC
Q 041947           73 IIVVCNSGGR----ALRACVDLR----N------A--HVTKLEGGYSAWVDEGVAGD  113 (126)
Q Consensus        73 ivvyc~~g~~----s~~~~~~l~----~------~--~v~~l~gG~~~w~~~g~~~~  113 (126)
                      ||+||.++.+    ++.+++.|.    +      .  +|+++.||+.+|... +|..
T Consensus        95 VVvy~~~~~~~~~~a~~~l~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~~  150 (157)
T 2gwf_A           95 VVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQY  150 (157)
T ss_dssp             EEEECSSCCGGGCCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH-CGGG
T ss_pred             EEEEcCCCCccccCcccHHHHHHHHHHhhccccccCCceEEEccHHHHHHHH-Chhh
Confidence            9999987753    233444443    1      2  489999999999984 6654

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4

Probab=99.79  E-value=4.3e-19  Score=115.72  Aligned_cols=110  Identities=13%  Similarity=0.189  Sum_probs=75.8

Q ss_pred             CCCceeCHHHHHHhh-hC--CcEEEecCChhhhcccCCCCccccccccccccC-------CCCChHHHHHHHhhcCCCCe
Q 041947            3 GDVASVGVDTAKDLL-SS--GHRFLDVRTTEEFNESHVHGALNVPYLFITQEG-------RVKNPEFLTQVASVCSKEDH   72 (126)
Q Consensus         3 ~~~~~i~~~~l~~~~-~~--~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~   72 (126)
                      .....|+++++.+++ .+  +++|||||++.||..||||||+|||...+....       .+++. ....+... ...+.
T Consensus        12 ~~~~~i~~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gainip~~~~~~~~~~~~l~~~lp~~-~~~~~~~~-~~~~~   89 (157)
T 1whb_A           12 KEKGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDD-SKDTWKKR-GNVEY   89 (157)
T ss_dssp             CCCSEECHHHHHHHHTCSSSCEEEEEESCHHHHHHCCBTTCEEECSSSCCTTCCHHHHHHSCCTT-HHHHHHGG-GTSSE
T ss_pred             ccCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhccccCCcccCHHHccCCCcHHHHHHHCChH-HHHHHHhc-CCCCE
Confidence            356789999999988 44  789999999999999999999999987653210       11111 11111111 34456


Q ss_pred             EEEEeCCCch----HHHHHHHHHh----------c--CcceecccHHhHHhCCCCCCCC
Q 041947           73 IIVVCNSGGR----ALRACVDLRN----------A--HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        73 ivvyc~~g~~----s~~~~~~l~~----------~--~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      ||+||.++.+    +..+++.|.+          .  +|+++.||+.+|... +|....
T Consensus        90 VVvy~~~~~~~~~~a~~~~~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~~~~  147 (157)
T 1whb_A           90 VVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQYTT  147 (157)
T ss_dssp             EEEECSSCCGGGCCTTCHHHHHHHTTTTTCSSCCCSSCCEEESSCHHHHHHH-CGGGBS
T ss_pred             EEEECCCCCccccccccHHHHHHHHHHHhccccccCCCeEEEcchHHHHHHH-ChhhhC
Confidence            9999987753    2344555441          2  489999999999985 776544

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.79  E-value=1.4e-19  Score=138.56  Aligned_cols=94  Identities=21%  Similarity=0.424  Sum_probs=81.6

Q ss_pred             CCCceeCHHHHHHhhhCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCch
Q 041947            3 GDVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGR   82 (126)
Q Consensus         3 ~~~~~i~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~   82 (126)
                      ..+..|+++++.+++.++.+|||+|++.||..||||||+|+|++.+.           ..+.. ++++++||+||.+|.+
T Consensus       486 ~~~~~i~~~~~~~~~~~~~~~iDvR~~~e~~~ghi~ga~~ip~~~l~-----------~~~~~-l~~~~~iv~~C~~g~r  553 (588)
T 3ics_A          486 GFVDTVQWHEIDRIVENGGYLIDVREPNELKQGMIKGSINIPLDELR-----------DRLEE-VPVDKDIYITCQLGMR  553 (588)
T ss_dssp             TSCCEECTTTHHHHHHTTCEEEECSCGGGGGGCBCTTEEECCHHHHT-----------TCGGG-SCSSSCEEEECSSSHH
T ss_pred             cccceecHHHHHHHhcCCCEEEEcCCHHHHhcCCCCCCEECCHHHHH-----------HHHhh-CCCCCeEEEECCCCcH
Confidence            35678999999999977899999999999999999999999996543           22222 4788999999999999


Q ss_pred             HHHHHHHHHhc--CcceecccHHhHHhC
Q 041947           83 ALRACVDLRNA--HVTKLEGGYSAWVDE  108 (126)
Q Consensus        83 s~~~~~~l~~~--~v~~l~gG~~~w~~~  108 (126)
                      |..+++.|.+.  +|++|.||+.+|.++
T Consensus       554 s~~a~~~l~~~G~~v~~l~GG~~~w~~~  581 (588)
T 3ics_A          554 GYVAARMLMEKGYKVKNVDGGFKLYGTV  581 (588)
T ss_dssp             HHHHHHHHHHTTCCEEEETTHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcEEEEcchHHHHHhh
Confidence            99999999888  899999999999875

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.79  E-value=5.8e-19  Score=127.05  Aligned_cols=110  Identities=13%  Similarity=0.107  Sum_probs=88.4

Q ss_pred             CceeCHHHHHHhh-h---CCcEEEecC--------C-hhhh-cccCCCCccccccccccccC------CCCChHHHHHHH
Q 041947            5 VASVGVDTAKDLL-S---SGHRFLDVR--------T-TEEF-NESHVHGALNVPYLFITQEG------RVKNPEFLTQVA   64 (126)
Q Consensus         5 ~~~i~~~~l~~~~-~---~~~~iiDvR--------~-~~e~-~~ghI~ga~~i~~~~~~~~~------~~~~~~~~~~~~   64 (126)
                      +..||+++|.+++ .   ..+++||++        . ..|| .+||||||++++++.+.+..      +...++|.+.+.
T Consensus        27 ~~LIsp~~l~~ll~~~~~~rvv~lDasw~lP~~~r~~~~E~~~~~HIPGAv~~Dld~~~d~~~~~ph~LP~~~~f~~~l~  106 (327)
T 3utn_X           27 FDLISPKAFVKLVASEKVHRIVPVDATWYLPSWKLDNKVDFLTKPRIPNSIFFDIDAISDKKSPYPHMFPTKKVFDDAMS  106 (327)
T ss_dssp             CEEECHHHHHHHHHHCSSSCEEEEECCCCCGGGCCCHHHHHHHSCBCTTCEECCTTTSSCTTSSSTTCCCCHHHHHHHHH
T ss_pred             ccccCHHHHHHHHhCCCCCcEEEEEecCCCCCCCCCHHHHHHhhCcCCCCeeeChHHhcCCCCCCCCCCcCHHHHHHHHH
Confidence            3479999999999 2   347899985        2 3466 67999999999998765422      334477889998


Q ss_pred             hh-cCCCCeEEEEeCCCchHHHHHHHHHhc----CcceecccHHhHHhCCCCCCCC
Q 041947           65 SV-CSKEDHIIVVCNSGGRALRACVDLRNA----HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        65 ~~-~~~~~~ivvyc~~g~~s~~~~~~l~~~----~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      .+ |+++++||||++.+..++..++|+++.    +|++|+|| .+|+++|+|+++.
T Consensus       107 ~lGI~~d~~VVvYD~~~~~~AaR~wW~Lr~~Gh~~V~vLdGg-~aW~~~g~p~~~~  161 (327)
T 3utn_X          107 NLGVQKDDILVVYDRVGNFSSPRCAWTLGVMGHPKVYLLNNF-NQYREFKYPLDSS  161 (327)
T ss_dssp             HTTCCTTCEEEEECSSSSSSHHHHHHHHHHTTCSEEEEESCH-HHHHHTTCCCBCC
T ss_pred             HcCCCCCCEEEEEeCCCCcHHHHHHHHHHHcCCCceeecccH-HHHHHhCCCcccC
Confidence            88 999999999999887777677777777    89999877 8999999999765

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.78  E-value=1e-19  Score=138.47  Aligned_cols=93  Identities=27%  Similarity=0.412  Sum_probs=79.4

Q ss_pred             CCceeCHHHHHHhhhCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchH
Q 041947            4 DVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRA   83 (126)
Q Consensus         4 ~~~~i~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s   83 (126)
                      .+..|+++++.++ +++.+|||+|++.||..+|||||+|+|++.+..           .+. .++++++||+||.+|.||
T Consensus       471 ~~~~i~~~~~~~~-~~~~~~iDvR~~~e~~~~~i~ga~~ip~~~l~~-----------~~~-~~~~~~~iv~~c~~g~rs  537 (565)
T 3ntd_A          471 DATPIHFDQIDNL-SEDQLLLDVRNPGELQNGGLEGAVNIPVDELRD-----------RMH-ELPKDKEIIIFSQVGLRG  537 (565)
T ss_dssp             SCCEECTTTTTSC-CTTEEEEECSCGGGGGGCCCTTCEECCGGGTTT-----------SGG-GSCTTSEEEEECSSSHHH
T ss_pred             ccceeeHHHHHhC-CCCcEEEEeCCHHHHhcCCCCCcEECCHHHHHH-----------HHh-hcCCcCeEEEEeCCchHH
Confidence            3566788887776 678999999999999999999999999976542           222 257899999999999999


Q ss_pred             HHHHHHHHhc--CcceecccHHhHHhCC
Q 041947           84 LRACVDLRNA--HVTKLEGGYSAWVDEG  109 (126)
Q Consensus        84 ~~~~~~l~~~--~v~~l~gG~~~w~~~g  109 (126)
                      ..+++.|.+.  +|++|.||+.+|+++|
T Consensus       538 ~~a~~~l~~~G~~v~~l~gG~~~w~~~g  565 (565)
T 3ntd_A          538 NVAYRQLVNNGYRARNLIGGYRTYKFAS  565 (565)
T ss_dssp             HHHHHHHHHTTCCEEEETTHHHHHHHTC
T ss_pred             HHHHHHHHHcCCCEEEEcChHHHHHhCc
Confidence            9999999888  8999999999999875

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.76  E-value=6.3e-19  Score=128.97  Aligned_cols=98  Identities=19%  Similarity=0.320  Sum_probs=76.2

Q ss_pred             hCCcEEEecCChhhhc-----------ccCCCCcccccccccc--c-cCC-CCC-hHHHHHHHhh---cCC---CCeEEE
Q 041947           18 SSGHRFLDVRTTEEFN-----------ESHVHGALNVPYLFIT--Q-EGR-VKN-PEFLTQVASV---CSK---EDHIIV   75 (126)
Q Consensus        18 ~~~~~iiDvR~~~e~~-----------~ghI~ga~~i~~~~~~--~-~~~-~~~-~~~~~~~~~~---~~~---~~~ivv   75 (126)
                      .++.+|||+|++.||.           .||||||+|||+..+.  + .+. +.+ +++...+...   +++   +++||+
T Consensus       172 ~~~~~lIDvR~~~Ef~G~~~~~~~~~~~GhIpGAiniP~~~l~~~~~~~~~~~~~~~l~~~~~~~~~gi~~~~~d~~ivv  251 (373)
T 1okg_A          172 PPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVVQGAGDAADLSSFVF  251 (373)
T ss_dssp             CTTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSSSCEECCHHHHHHHHHTTCC-----CCCTTSEE
T ss_pred             ccCceEEeCCCHHHccccccccccCCcCccCCCcEEecHHHhhccCCCCCccCCHHHHHHHHHhhhcCCCcccCCCCEEE
Confidence            4568999999999999           9999999999998875  3 222 222 3454545432   366   899999


Q ss_pred             EeCCCchHHHHHHHHHhc---CcceecccHHhHHh-CCCCCCCC
Q 041947           76 VCNSGGRALRACVDLRNA---HVTKLEGGYSAWVD-EGVAGDKP  115 (126)
Q Consensus        76 yc~~g~~s~~~~~~l~~~---~v~~l~gG~~~w~~-~g~~~~~~  115 (126)
                      ||.+|.||..++..|..+   +|++|+||+.+|.. .++|+++.
T Consensus       252 yC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~pv~~~  295 (373)
T 1okg_A          252 SCGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIMRS  295 (373)
T ss_dssp             ECSSSSTHHHHHHHHHHTTSCCCEECSSHHHHHHHHTHHHHHHH
T ss_pred             ECCchHHHHHHHHHHHHcCCCCeeEeCChHHHHhcCCCCCcccC
Confidence            999999999999998877   79999999999997 67876543

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.75  E-value=1.1e-18  Score=130.86  Aligned_cols=100  Identities=18%  Similarity=0.222  Sum_probs=84.8

Q ss_pred             CCceeCHHHHHHhhhCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchH
Q 041947            4 DVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRA   83 (126)
Q Consensus         4 ~~~~i~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s   83 (126)
                      .+..|++++|.+++..+ +|||+|++.+|..||||||+|+|++          ..|..++.+..+++++|||||.++. +
T Consensus       271 ~~~~is~~~l~~~l~~~-~iiD~R~~~~y~~ghIpGA~~i~~~----------~~~~~~~~~l~~~~~~vvvy~~~~~-~  338 (474)
T 3tp9_A          271 ERVDLPPERVRAWREGG-VVLDVRPADAFAKRHLAGSLNIPWN----------KSFVTWAGWLLPADRPIHLLAADAI-A  338 (474)
T ss_dssp             EECCCCGGGHHHHHHTS-EEEECSCHHHHHHSEETTCEECCSS----------TTHHHHHHHHCCSSSCEEEECCTTT-H
T ss_pred             CCceeCHHHHHHHhCCC-EEEECCChHHHhccCCCCeEEECcc----------hHHHHHHHhcCCCCCeEEEEECCCc-H
Confidence            35679999999999556 9999999999999999999999984          3678888888788999999999776 5


Q ss_pred             HHHHHHHHhc---CcceecccHHhHHhCCCCCCCC
Q 041947           84 LRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        84 ~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      ..++++|..+   +|+.|.+|+.+|..++.++...
T Consensus       339 ~~~~~~L~~~G~~~v~~~l~G~~~W~~~g~~~~~~  373 (474)
T 3tp9_A          339 PDVIRALRSIGIDDVVDWTDPAAVDRAAPDDVASY  373 (474)
T ss_dssp             HHHHHHHHHTTCCCEEEEECGGGGTTCCGGGEECC
T ss_pred             HHHHHHHHHcCCcceEEecCcHHHHHhcccccccc
Confidence            5677777777   8888777999999998887654

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.74  E-value=5.2e-18  Score=116.55  Aligned_cols=91  Identities=14%  Similarity=0.189  Sum_probs=69.9

Q ss_pred             hCCcEEEecCChhhhcccCCCCccccccc--cccccC---C-CCChHHHHHHHhhcCCCCeEEEEeCCCc-hHHHHHHHH
Q 041947           18 SSGHRFLDVRTTEEFNESHVHGALNVPYL--FITQEG---R-VKNPEFLTQVASVCSKEDHIIVVCNSGG-RALRACVDL   90 (126)
Q Consensus        18 ~~~~~iiDvR~~~e~~~ghI~ga~~i~~~--~~~~~~---~-~~~~~~~~~~~~~~~~~~~ivvyc~~g~-~s~~~~~~l   90 (126)
                      .++.+|||+|++.+|..||||||+|+|+.  .+....   . ...+.|..++... ..+++|||||.+|. ++..+++.|
T Consensus         4 ~~~~~iiDvR~~~ey~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~ivvyc~~g~~~s~~a~~~L   82 (230)
T 2eg4_A            4 PEDAVLVDTRPRPAYEAGHLPGARHLDLSAPKLRLREEAELKALEGGLTELFQTL-GLRSPVVLYDEGLTSRLCRTAFFL   82 (230)
T ss_dssp             CTTCEEEECSCHHHHHHCBCTTCEECCCCSCCCCCCSHHHHHHHHHHHHHHHHHT-TCCSSEEEECSSSCHHHHHHHHHH
T ss_pred             CCCEEEEECCChhhHhhCcCCCCEECCccchhcccCCCCCcCCCHHHHHHHHHhc-CCCCEEEEEcCCCCccHHHHHHHH
Confidence            35789999999999999999999999997  443100   0 0013455555555 55889999999998 888888888


Q ss_pred             Hhc---CcceecccHHhHHhCCCCCCCC
Q 041947           91 RNA---HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        91 ~~~---~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      . +   +|++|+||   |..  +|++..
T Consensus        83 ~-~G~~~v~~l~GG---W~~--~p~~~~  104 (230)
T 2eg4_A           83 G-LGGLEVQLWTEG---WEP--YATEKE  104 (230)
T ss_dssp             H-HTTCCEEEECSS---CGG--GCCBCS
T ss_pred             H-cCCceEEEeCCC---Ccc--CcccCC
Confidence            8 8   79999999   877  777554

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.71  E-value=4.2e-17  Score=117.37  Aligned_cols=104  Identities=17%  Similarity=0.304  Sum_probs=77.8

Q ss_pred             eeCHHHHHHhhh-----CCcEEEecCChhhhc-----------ccCCCCccccccccccccC-C-CC-C-hHHHHHH---
Q 041947            7 SVGVDTAKDLLS-----SGHRFLDVRTTEEFN-----------ESHVHGALNVPYLFITQEG-R-VK-N-PEFLTQV---   63 (126)
Q Consensus         7 ~i~~~~l~~~~~-----~~~~iiDvR~~~e~~-----------~ghI~ga~~i~~~~~~~~~-~-~~-~-~~~~~~~---   63 (126)
                      .++.+++.+.+.     ++.+|||+|++.+|.           .||||||+|+|+..+.+.. . .. . +.+...+   
T Consensus       185 v~~~~~v~~~v~~~~~~~~~~lvDaRs~~rf~G~~~ep~~~~r~GHIPGA~nlP~~~~ld~~~~~~~~~~e~l~~~l~~~  264 (327)
T 3utn_X          185 IVDYEEMFQLVKSGELAKKFNAFDARSLGRFEGTEPEPRSDIPSGHIPGTQPLPYGSLLDPETKTYPEAGEAIHATLEKA  264 (327)
T ss_dssp             EECHHHHHHHHHTTCHHHHCEEEECSCHHHHHTSSCCSSSSCCCCBCTTEEECCGGGGSCTTTCCCCCTTHHHHHHHHHH
T ss_pred             eecHHHHhhhhhcccccccceeeccCccceecccccCccccccCCCCCCCcccChhhccCCCCCCCCCcHHHHHHHHHHH
Confidence            467788888772     346899999999985           5999999999998876532 1 22 1 2222222   


Q ss_pred             -Hh---hcCCCCeEEEEeCCCchHHHHHHHHHhc---CcceecccHHhHHhCCC
Q 041947           64 -AS---VCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDEGV  110 (126)
Q Consensus        64 -~~---~~~~~~~ivvyc~~g~~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~  110 (126)
                       ..   .++++++||+||++|.++...+..|..+   ++.+|+|+|..|.....
T Consensus       265 ~~~~~~gid~~k~vI~yCgsGvtA~~~~laL~~lG~~~v~lYdGSWsEW~~r~~  318 (327)
T 3utn_X          265 LKDFHCTLDPSKPTICSCGTGVSGVIIKTALELAGVPNVRLYDGSWTEWVLKSG  318 (327)
T ss_dssp             HHHTTCCCCTTSCEEEECSSSHHHHHHHHHHHHTTCCSEEEESSHHHHHHHHHC
T ss_pred             HHHhhcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeCCCcHHHhccccC
Confidence             21   3578899999999999998887777666   79999999999987543

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.69  E-value=1.3e-18  Score=130.48  Aligned_cols=83  Identities=27%  Similarity=0.347  Sum_probs=0.0

Q ss_pred             HHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHH
Q 041947           13 AKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLR   91 (126)
Q Consensus        13 l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~   91 (126)
                      +.+.+ +++.+|||+|++.||..||||||+|+|+..+.           ..+.. ++++++||+||.+|.+|..++..|.
T Consensus       379 ~~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~-----------~~~~~-l~~~~~iv~~C~~G~rs~~a~~~L~  446 (466)
T 3r2u_A          379 HSEDITGNESHILDVRNDNEWNNGHLSQAVHVPHGKLL-----------ETDLP-FNKNDVIYVHCQSGIRSSIAIGILE  446 (466)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhCCCcEEEEeCCHHHHhcCcCCCCEECCHHHHH-----------HHHhh-CCCCCeEEEECCCChHHHHHHHHHH
Confidence            34444 56789999999999999999999999997543           22222 4788999999999999999998888


Q ss_pred             hc---CcceecccHHhHHh
Q 041947           92 NA---HVTKLEGGYSAWVD  107 (126)
Q Consensus        92 ~~---~v~~l~gG~~~w~~  107 (126)
                      ..   +|++|.||+.+|.+
T Consensus       447 ~~G~~~v~~l~GG~~~W~~  465 (466)
T 3r2u_A          447 HKGYHNIINVNEGYKDIQL  465 (466)
T ss_dssp             -------------------
T ss_pred             HcCCCCEEEecChHHHHhh
Confidence            87   89999999999975

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.44  E-value=1.4e-13  Score=103.26  Aligned_cols=77  Identities=17%  Similarity=0.317  Sum_probs=61.6

Q ss_pred             hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc---C
Q 041947           18 SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA---H   94 (126)
Q Consensus        18 ~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~---~   94 (126)
                      +++++|||+|++.+|..||||||+|+|+          ...|..++.+.++++++||+||. +.++..++++|...   +
T Consensus       294 ~~~~~ilD~R~~~~y~~gHIpGAv~ip~----------~~~~~~~~~~~~~~~~~vvly~~-~~~a~~a~~~L~~~G~~~  362 (466)
T 3r2u_A          294 NTNRLTFDLRSKEAYHGGHIEGTINIPY----------DKNFINQIGWYLNYDQEINLIGD-YHLVSKATHTLQLIGYDD  362 (466)
T ss_dssp             CCCSEEEECSCHHHHHHSCCTTCEECCS----------STTHHHHHTTTCCTTSCEEEESC-HHHHHHHHHHHHTTTCCC
T ss_pred             CCCeEEEECCCHHHHhhCCCCCcEECCc----------cHHHHHHHHhccCCCCeEEEEEC-CchHHHHHHHhhhhhccc
Confidence            5678999999999999999999999998          34678888887889999999999 55777777777777   7


Q ss_pred             cce-ecccHHhH
Q 041947           95 VTK-LEGGYSAW  105 (126)
Q Consensus        95 v~~-l~gG~~~w  105 (126)
                      |+. ++|+...|
T Consensus       363 v~~~l~g~~~~~  374 (466)
T 3r2u_A          363 IAGYQLPQSKIQ  374 (466)
T ss_dssp             EEEEECCC----
T ss_pred             ccccccCccccc
Confidence            776 55654443

>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}

Probab=98.29  E-value=2.1e-06  Score=55.31  Aligned_cols=77  Identities=14%  Similarity=0.158  Sum_probs=48.9

Q ss_pred             eCHHHHHHhh-hCCcEEEecCChhh------------hccc-CCCCccccccccccccCCCCChHHHHHHHhhc-CCCCe
Q 041947            8 VGVDTAKDLL-SSGHRFLDVRTTEE------------FNES-HVHGALNVPYLFITQEGRVKNPEFLTQVASVC-SKEDH   72 (126)
Q Consensus         8 i~~~~l~~~~-~~~~~iiDvR~~~e------------~~~g-hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   72 (126)
                      ++++++..+. .+-..|||+|+..|            +..+ +|.|.+|+|+...    ....+.+ ..+...+ ..+++
T Consensus        30 ~~~~d~~~L~~~Gi~~IIdlR~~~E~~~~p~~~~~~~~~~~~gi~~~~~iPv~~~----~~~~~~~-~~~~~~l~~~~~p  104 (156)
T 2f46_A           30 LTKADAEQIAQLGIKTIICNRPDREEESQPDFAQIKQWLEQAGVTGFHHQPVTAR----DIQKHDV-ETFRQLIGQAEYP  104 (156)
T ss_dssp             CCGGGHHHHHHHTCCEEEECSCTTSSTTCCCHHHHHHHHGGGTCCEEEECCCCTT----TCCHHHH-HHHHHHHHTSCSS
T ss_pred             CCHHHHHHHHHCCCCEEEECCCCccccCCCcHHHHHHHHHHCCCHhheECccCCC----CCCHHHH-HHHHHHHHhCCCC
Confidence            5667777666 44468999997765            3344 5998999998532    1112222 2222222 35789


Q ss_pred             EEEEeCCCchHHHHHHH
Q 041947           73 IIVVCNSGGRALRACVD   89 (126)
Q Consensus        73 ivvyc~~g~~s~~~~~~   89 (126)
                      |+|||.+|.|+...+..
T Consensus       105 VlvHC~sG~Rs~~l~al  121 (156)
T 2f46_A          105 VLAYCRTGTRCSLLWGF  121 (156)
T ss_dssp             EEEECSSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHH
Confidence            99999999988754443

>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1

Probab=95.10  E-value=0.0028  Score=41.23  Aligned_cols=26  Identities=23%  Similarity=0.413  Sum_probs=22.7

Q ss_pred             cEEEecCChhhhcccCCCCccccccccccc
Q 041947           21 HRFLDVRTTEEFNESHVHGALNVPYLFITQ   50 (126)
Q Consensus        21 ~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~   50 (126)
                      .++||||...||.    |||+|||...++.
T Consensus       122 ~~liDvRe~~E~~----pgA~~iprg~lE~  147 (168)
T 1v8c_A          122 GAVVRFREVEPLK----VGSLSIPQLRVEV  147 (168)
T ss_dssp             TEEEEEEEEEEEE----ETTEEEEEEEEEE
T ss_pred             eEEEECCChhhcC----CCCEEcChhHHHH
Confidence            4899999999999    9999999876543

>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A

Probab=95.07  E-value=0.04  Score=34.21  Aligned_cols=80  Identities=13%  Similarity=0.067  Sum_probs=42.4

Q ss_pred             HHHHHHhh-hCCcEEEecCChhhhcccCCCCc--cccccccccccCCCCCh---HHHHHHHhhcCCCCeEEEEeCCCc-h
Q 041947           10 VDTAKDLL-SSGHRFLDVRTTEEFNESHVHGA--LNVPYLFITQEGRVKNP---EFLTQVASVCSKEDHIIVVCNSGG-R   82 (126)
Q Consensus        10 ~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga--~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ivvyc~~g~-~   82 (126)
                      ++++..+. .+=..|||+|+..+......+|-  +++|+....   ....+   ++...+......+.+|+|+|..|. |
T Consensus        25 ~~~~~~L~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~R  101 (150)
T 4erc_A           25 PAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRLRIPDFC---PPAPDQIDRFVQIVDEANARGEAVGVHCALGFGR  101 (150)
T ss_dssp             HHHHHHHHHTTEEEEEECSSSCCTTGGGCTTSEEEECCCCTTS---CCCHHHHHHHHHHHHHHHHTTCEEEEECSSSSHH
T ss_pred             HHHHHHHHHCCCCEEEEcCCCCCCcccccCCceEEEEecCCCC---CCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCH
Confidence            44554444 34469999998766433333442  244443221   11112   233333333346789999998884 7


Q ss_pred             HHHH-HHHHHh
Q 041947           83 ALRA-CVDLRN   92 (126)
Q Consensus        83 s~~~-~~~l~~   92 (126)
                      +... +.+|..
T Consensus       102 sg~~~a~~l~~  112 (150)
T 4erc_A          102 TGTMLACYLVK  112 (150)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            7643 433444

>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens}

Probab=94.93  E-value=0.049  Score=33.77  Aligned_cols=70  Identities=11%  Similarity=0.106  Sum_probs=37.5

Q ss_pred             hCCcEEEecCChhhhcccCCCC--ccccccccccccCCCCCh---HHHHHHHhhcCCCCeEEEEeCCC-chHHHHHHHH
Q 041947           18 SSGHRFLDVRTTEEFNESHVHG--ALNVPYLFITQEGRVKNP---EFLTQVASVCSKEDHIIVVCNSG-GRALRACVDL   90 (126)
Q Consensus        18 ~~~~~iiDvR~~~e~~~ghI~g--a~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ivvyc~~g-~~s~~~~~~l   90 (126)
                      .+-..|||+++..++....+++  -.++|+....   ....+   ++...+...+..+.+|+|+|..| +|+...+...
T Consensus        35 ~gi~~Vv~l~~~~e~~~~~~~~~~~~~~~~~d~~---~p~~~~~~~~~~~i~~~~~~~~~vlVHC~aG~~Rsg~~~~~~  110 (151)
T 2img_A           35 LGVRHLVSLTERGPPHSDSCPGLTLHRLRIPDFC---PPAPDQIDRFVQIVDEANARGEAVGVHCALGFGRTGTMLACY  110 (151)
T ss_dssp             TTEEEEEECSSSCCTTGGGCTTSEEEECCCCTTC---CCCHHHHHHHHHHHHHHHHTTCEEEEECSSSSSHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCHHHHhhCCeEEEeCCCCC---CCCHHHHHHHHHHHHHHHhCCCcEEEECCCCCChHHHHHHHH
Confidence            3446899999876654333332  3445543211   11112   23333333334678999999877 4765554433

>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A

Probab=92.76  E-value=0.49  Score=29.31  Aligned_cols=84  Identities=8%  Similarity=0.008  Sum_probs=43.7

Q ss_pred             CHHHHHHhh-hCCcEEEecCChhhhcc-------cCCCCccccccccccccC-CCCChHHHHHHHhhcC-CCCeEEEEeC
Q 041947            9 GVDTAKDLL-SSGHRFLDVRTTEEFNE-------SHVHGALNVPYLFITQEG-RVKNPEFLTQVASVCS-KEDHIIVVCN   78 (126)
Q Consensus         9 ~~~~l~~~~-~~~~~iiDvR~~~e~~~-------ghI~ga~~i~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~ivvyc~   78 (126)
                      +..++..+. .+=..|||+|+..+...       ..| .-+++|+.....+. ....+.+...+....+ .+.+|+|+|.
T Consensus        22 ~~~d~~~L~~~gi~~Vi~l~~~~e~~~~~~~~~~~gi-~~~~ipi~d~~~~~~~~~~~~~~~~~~~i~~~~~~~vlvHC~  100 (151)
T 1xri_A           22 DSANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGI-RLFQFGIEGNKEPFVNIPDHKIRMALKVLLDEKNHPVLIHCK  100 (151)
T ss_dssp             CHHHHHHHHHHTCSEEEECCSSCCCHHHHHHHHHHTC-EEEECCCCCCCGGGCCCCHHHHHHHHHHHHCGGGCSEEEECS
T ss_pred             CccCHHHHHHCCCCEEEECCCCCcChhHHHHHHhcCC-eEEecccccccCccccCCHHHHHHHHHHHHcCCCCCEEEECC
Confidence            344544433 34569999998665321       111 12445543211111 1112334444443333 5688999999


Q ss_pred             CC-chHHHHHHHHHhc
Q 041947           79 SG-GRALRACVDLRNA   93 (126)
Q Consensus        79 ~g-~~s~~~~~~l~~~   93 (126)
                      .| +|+...+..++..
T Consensus       101 aG~~RTg~~~a~~l~~  116 (151)
T 1xri_A          101 RGKHRTGCLVGCLRKL  116 (151)
T ss_dssp             SSSSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            88 5877776555544

>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB: 1fq1_A*

Probab=92.09  E-value=0.43  Score=31.53  Aligned_cols=74  Identities=15%  Similarity=0.200  Sum_probs=37.2

Q ss_pred             HHHHHhh-hCCcEEEecCChhhhcccCCC---------C--ccccccccccccCCCCCh---HHHHHHHhhcCCCCeEEE
Q 041947           11 DTAKDLL-SSGHRFLDVRTTEEFNESHVH---------G--ALNVPYLFITQEGRVKNP---EFLTQVASVCSKEDHIIV   75 (126)
Q Consensus        11 ~~l~~~~-~~~~~iiDvR~~~e~~~ghI~---------g--a~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ivv   75 (126)
                      +++..+. .+=..|||+|+..|...-.++         |  -+++|+...   ......   .+...+...+..+.+|+|
T Consensus        62 ~d~~~L~~~gi~~Vv~l~~~~E~~~~~~~~~~~~~~~~gi~~~~~pi~d~---~~p~~~~~~~~~~~i~~~~~~~~~VlV  138 (212)
T 1fpz_A           62 KDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADG---GTPDIASCCEIMEELTTCLKNYRKTLI  138 (212)
T ss_dssp             HHHHHHHHHTCCEEEECCCHHHHHHTTCTTHHHHHHHTTCEEEECCCCTT---CCCCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHCCCCEEEEcCCHHHHHhcCCccHHHHHHHcCCEEEEecCCCC---CCCCHHHHHHHHHHHHHHHhCCCCEEE
Confidence            3344333 455699999998664321111         1  123333211   111111   233333333346788999


Q ss_pred             EeCCC-chHHHHH
Q 041947           76 VCNSG-GRALRAC   87 (126)
Q Consensus        76 yc~~g-~~s~~~~   87 (126)
                      +|..| +|+...+
T Consensus       139 HC~aG~gRTg~~~  151 (212)
T 1fpz_A          139 HSYGGLGRSCLVA  151 (212)
T ss_dssp             ECSSSSSHHHHHH
T ss_pred             ECCCCCCHHHHHH
Confidence            99877 4655543

>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens}

Probab=91.90  E-value=0.41  Score=30.32  Aligned_cols=72  Identities=14%  Similarity=0.149  Sum_probs=35.8

Q ss_pred             cEEEecCChhhhcccCCCCccccccccccccCCCC-ChHHHHHHHhhcCCCCeEEEEeCCC-chHHHH-HHHHHhc
Q 041947           21 HRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVK-NPEFLTQVASVCSKEDHIIVVCNSG-GRALRA-CVDLRNA   93 (126)
Q Consensus        21 ~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivvyc~~g-~~s~~~-~~~l~~~   93 (126)
                      ..|||+|+..+-...++ .-+++|+.......... -.+....+......+.+|+|+|..| +|+... +..|...
T Consensus        34 ~~Vi~l~~~~~~~~~~i-~~~~ip~~D~~~~~l~~~~~~~~~fi~~~~~~~~~VlVHC~aG~~RSg~~~~ayLm~~  108 (165)
T 1wrm_A           34 THILSVHDSARPMLEGV-KYLCIPAADSPSQNLTRHFKESIKFIHECRLRGESCLVHCLAGVSRSVTLVIAYIMTV  108 (165)
T ss_dssp             EEEEECSTTCCCCSTTC-EEEECCCCSSTTSCCGGGHHHHHHHHHHHHHTTCEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred             cEEEEecCCCCCCCCCC-eEEEEECCCCCCccHHHHHHHHHHHHHHHHHCCCeEEEECCCCCChhHHHHHHHHHHH
Confidence            58999997543111111 12344443211111100 0122233333334678999999988 787764 5555544

>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus}

Probab=91.90  E-value=0.21  Score=31.62  Aligned_cols=71  Identities=15%  Similarity=0.183  Sum_probs=35.0

Q ss_pred             cEEEecCChhhhcccCCCC--ccccccccccccCCC-CChHHHHHHHhhcCCCCeEEEEeCCC-chHHHH-HHHHHhc
Q 041947           21 HRFLDVRTTEEFNESHVHG--ALNVPYLFITQEGRV-KNPEFLTQVASVCSKEDHIIVVCNSG-GRALRA-CVDLRNA   93 (126)
Q Consensus        21 ~~iiDvR~~~e~~~ghI~g--a~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivvyc~~g-~~s~~~-~~~l~~~   93 (126)
                      ..|||+|+..+..  ...|  -+++|+......... .-.+....+...+..+.+|+|+|..| +|+... +.+|...
T Consensus        39 ~~Vi~l~~~~~~~--~~~~~~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~~~~ayLm~~  114 (164)
T 2hcm_A           39 TLCVNVSRQQPGP--RAPGVAELRVPVFDDPAEDLLTHLEPTCAAMEAAVRDGGSCLVYCKNGRSRSAAVCTAYLMRH  114 (164)
T ss_dssp             EEEEECSSSCCCC--CCTTCEEEECCCCSCTTSCCHHHHHHHHHHHHHHHHTTCEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCCC--CCCCCEEEEEeCcCCCCchHHHHHHHHHHHHHHHHHcCCEEEEECCCCCchHHHHHHHHHHHH
Confidence            4899999865421  1122  234454321111000 00122233333334678999999988 677644 3444443

>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens}

Probab=91.85  E-value=0.35  Score=29.84  Aligned_cols=71  Identities=10%  Similarity=0.044  Sum_probs=36.3

Q ss_pred             CcEEEecCChhhhcccCCCC---ccccccccccccCCCC-ChHHHHHHHhhcCCCCeEEEEeCCC-chHHH-HHHHHHhc
Q 041947           20 GHRFLDVRTTEEFNESHVHG---ALNVPYLFITQEGRVK-NPEFLTQVASVCSKEDHIIVVCNSG-GRALR-ACVDLRNA   93 (126)
Q Consensus        20 ~~~iiDvR~~~e~~~ghI~g---a~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivvyc~~g-~~s~~-~~~~l~~~   93 (126)
                      =..|||+++..+   ...++   -.++|+.......... -.+....+......+.+|+|+|..| +||.. ++.+|...
T Consensus        30 i~~Vi~l~~~~~---~~~~~~~~~~~ipi~D~~~~~l~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~v~ayLm~~  106 (145)
T 2nt2_A           30 VRYILNVTREID---NFFPGVFEYHNIRVYDEEATDLLAYWNDTYKFISKAKKHGSKCLVHSKMGVSRSASTVIAYAMKE  106 (145)
T ss_dssp             EEEEEECCSSSC---CSCBTTBEEEECCCCSSTTCCCGGGHHHHHHHHHHHHHTTCEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCc---cCCCCCcEEEEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCeEEEECCCCCchHHHHHHHHHHHH
Confidence            358999997543   11222   2345553321111110 0122233333334678999999988 78754 44555543

>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A

Probab=91.15  E-value=0.73  Score=28.27  Aligned_cols=73  Identities=15%  Similarity=0.083  Sum_probs=36.3

Q ss_pred             CCcEEEecCChhh-hcccCCCCccccccccccccCCCC-ChHHHHHHHhhcCCCCeEEEEeCCC-chHHH-HHHHHHh
Q 041947           19 SGHRFLDVRTTEE-FNESHVHGALNVPYLFITQEGRVK-NPEFLTQVASVCSKEDHIIVVCNSG-GRALR-ACVDLRN   92 (126)
Q Consensus        19 ~~~~iiDvR~~~e-~~~ghI~ga~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivvyc~~g-~~s~~-~~~~l~~   92 (126)
                      +=..||++++... +...++ .-.++|+.......... -.+....+......+.+|+|+|..| +|+.. ++.+|..
T Consensus        29 gI~~Vi~l~~~~~~~~~~~~-~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~~~~aylm~  105 (144)
T 3ezz_A           29 GITALLNVSSDCPNHFEGHY-QYKCIPVEDNHKADISSWFMEAIEYIDAVKDCRGRVLVHSQAGISRSATICLAYLMM  105 (144)
T ss_dssp             TCCEEEECSSSCCCTTTTTS-EEEECCCCSSSSCCTTTTHHHHHHHHHHHHHTTCCEEEEESSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEEccCCCCccCCCCc-eEEEEEcccCCCCChHHHHHHHHHHHHHHHhcCCeEEEECCCCCChhHHHHHHHHHH
Confidence            4468999997432 111111 12345554322221111 1233344444445678999999987 47654 3444444

>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}

Probab=90.40  E-value=0.49  Score=29.70  Aligned_cols=71  Identities=10%  Similarity=0.073  Sum_probs=35.2

Q ss_pred             CCcEEEecCChhhhcccCCCC--ccccccccccccCCCC-ChHHHHHHHhhcCCCCeEEEEeCCC-chHHHH-HHHHHh
Q 041947           19 SGHRFLDVRTTEEFNESHVHG--ALNVPYLFITQEGRVK-NPEFLTQVASVCSKEDHIIVVCNSG-GRALRA-CVDLRN   92 (126)
Q Consensus        19 ~~~~iiDvR~~~e~~~ghI~g--a~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivvyc~~g-~~s~~~-~~~l~~   92 (126)
                      +=..|||+|+..+.   ...|  -+++|+.......... -.+....+......+.+|+|+|..| +|+... +..|..
T Consensus        33 gI~~Vi~l~~~~~~---~~~~i~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~~~~aylm~  108 (160)
T 1yz4_A           33 KITHIISIHESPQP---LLQDITYLRIPVADTPEVPIKKHFKECINFIHCCRLNGGNCLVHSFAGISRSTTIVTAYVMT  108 (160)
T ss_dssp             TCCEEEEECSSCCC---CCTTCEEEEECCCSCTTSCGGGGHHHHHHHHHHHHHTTCCEEEEETTSSSHHHHHHHHHHHH
T ss_pred             CCeEEEEccCCCCC---ccCCCeEEEEECCCCCCccHHHHHHHHHHHHHHHHHcCCeEEEECCCCCchHHHHHHHHHHH
Confidence            34589999975431   1122  1344543211111000 0122333333334678899999988 787643 344433

>2q05_A Late protein H1, dual specificity protein phosphatase; structural genomics, APC7320, P protein structure initiative; HET: MSE; 2.57A {Vaccinia virus WR}

Probab=89.88  E-value=0.66  Score=30.34  Aligned_cols=68  Identities=12%  Similarity=0.189  Sum_probs=33.7

Q ss_pred             cEEEecCChhhhcc-cCCCCccccccccccccCCC-CChHHHHHHHhhcCCCCeEEEEeCCC-chHHHHHHH
Q 041947           21 HRFLDVRTTEEFNE-SHVHGALNVPYLFITQEGRV-KNPEFLTQVASVCSKEDHIIVVCNSG-GRALRACVD   89 (126)
Q Consensus        21 ~~iiDvR~~~e~~~-ghI~ga~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivvyc~~g-~~s~~~~~~   89 (126)
                      ..|||+|+..+... .++ .-.++|.......... .-.++...+......+.+|+|+|..| .|+...+..
T Consensus        75 ~~Vi~l~~~~~~~~~~~~-~~~~~p~~d~~~~~l~~~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~~v~~  145 (195)
T 2q05_A           75 KYVLNLTMDKYTLPNSNI-NIIHIPLVDDTTTDISKYFDDVTAFLSKCDQRNEPVLVHCAAGVNRSGAMILA  145 (195)
T ss_dssp             SEEEECSSSCCCCTTCCC-EEEECCCCCSSSCCCGGGHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHHHHH
T ss_pred             CEEEEECCCCCCcccCCc-EEEEEEcCCCCcccHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCChHHHHHHH
Confidence            58999998653211 111 1123443321111000 00234444444334578899999988 676655443

>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein dual-specificity phosphatase, inhibitor; HET: STT; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1vhr_A* 1j4x_A*

Probab=89.45  E-value=0.67  Score=29.69  Aligned_cols=34  Identities=15%  Similarity=0.270  Sum_probs=21.1

Q ss_pred             HHHHHhhcCC-CCeEEEEeCCC-chHHH-HHHHHHhc
Q 041947           60 LTQVASVCSK-EDHIIVVCNSG-GRALR-ACVDLRNA   93 (126)
Q Consensus        60 ~~~~~~~~~~-~~~ivvyc~~g-~~s~~-~~~~l~~~   93 (126)
                      ...+...+.. +.+|+|+|..| +|+.. ++..|...
T Consensus       104 ~~~i~~~~~~~~~~VlVHC~~G~~RSg~~v~ayLm~~  140 (183)
T 3f81_A          104 ADFIDQALAQKNGRVLVHCREGYSRSPTLVIAYLMMR  140 (183)
T ss_dssp             HHHHHHHHHSTTCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCeEEEECCCCcchHHHHHHHHHHHH
Confidence            3344443333 78999999988 57766 45555443

>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase, dual specifici phosphatase; 1.88A {Homo sapiens}

Probab=89.24  E-value=0.76  Score=29.89  Aligned_cols=72  Identities=14%  Similarity=0.102  Sum_probs=35.5

Q ss_pred             CCcEEEecCChhhhcccCCCCc--cccccccccccCCCC-ChHHHHHHHhhcCCCCeEEEEeCCC-chHHHH-HHHHHh
Q 041947           19 SGHRFLDVRTTEEFNESHVHGA--LNVPYLFITQEGRVK-NPEFLTQVASVCSKEDHIIVVCNSG-GRALRA-CVDLRN   92 (126)
Q Consensus        19 ~~~~iiDvR~~~e~~~ghI~ga--~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivvyc~~g-~~s~~~-~~~l~~   92 (126)
                      +=..|||+++..+  ....+|-  +++|+.......... -.+....+......+.+|+|+|..| +|+... +.+|..
T Consensus        51 gI~~Vi~l~~~~~--~~~~~gi~y~~ipi~D~~~~~l~~~~~~~~~fi~~~~~~~~~VlVHC~aG~~RSgtvv~ayLm~  127 (190)
T 2wgp_A           51 GITCIVNATIEIP--NFNWPQFEYVKVPLADMPHAPIGLYFDTVADKIHSVSRKHGATLVHCAAGVSRSATLCIAYLMK  127 (190)
T ss_dssp             TCCEEEECCSSSC--CCCCTTSEEEECCCCSSTTSCGGGGHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCCC--CCCCCCCEEEEEEcccCCCCCHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHH
Confidence            3458999997542  1122332  334443211111100 0122333333334578899999988 777643 444444

>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel beta sheet with flanking helices, structural genomics, PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5 PDB: 2oz5_A*

Probab=87.95  E-value=3.6  Score=28.78  Aligned_cols=29  Identities=14%  Similarity=0.131  Sum_probs=20.5

Q ss_pred             CceeCHHHHHHhh-hCCcEEEecCChhhhc
Q 041947            5 VASVGVDTAKDLL-SSGHRFLDVRTTEEFN   33 (126)
Q Consensus         5 ~~~i~~~~l~~~~-~~~~~iiDvR~~~e~~   33 (126)
                      +..++++++..+. -+=-.|||.|+..|..
T Consensus        53 l~~lt~~d~~~L~~lGI~tVIDLR~~~E~~   82 (296)
T 1ywf_A           53 LSRLDDAGRATLRRLGITDVADLRSSREVA   82 (296)
T ss_dssp             CTTCCHHHHHHHHHHTCCEEEECCCHHHHH
T ss_pred             cccCCHHHHHHHHhCCCCEEEECcChhhhh
Confidence            3456777776655 3446999999988853

>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}

Probab=87.81  E-value=1.1  Score=27.48  Aligned_cols=72  Identities=19%  Similarity=0.209  Sum_probs=34.5

Q ss_pred             CCcEEEecCChhhhcccCCCC--ccccccccccccCCCC-ChHHHHHHHhhcCCCCeEEEEeCCC-chHHHH-HHHHHh
Q 041947           19 SGHRFLDVRTTEEFNESHVHG--ALNVPYLFITQEGRVK-NPEFLTQVASVCSKEDHIIVVCNSG-GRALRA-CVDLRN   92 (126)
Q Consensus        19 ~~~~iiDvR~~~e~~~ghI~g--a~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivvyc~~g-~~s~~~-~~~l~~   92 (126)
                      +=..||+++...+  .....|  -.++|+.......... -.+....+......+.+|+|+|..| +||... +.+|..
T Consensus        29 gI~~Vl~l~~~~~--~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~sRS~~~v~ayLm~  105 (144)
T 3s4e_A           29 KVTHILNVAYGVE--NAFLSDFTYKSISILDLPETNILSYFPECFEFIEEAKRKDGVVLVHSNAGVSRAAAIVIGFLMN  105 (144)
T ss_dssp             TCCEEEECSSSCC--CCCTTTSEEEECCCCCCTTSCGGGGHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEccCCCC--CCCCCCCEEEEEeccCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHH
Confidence            3458999986332  111111  2345543322111110 1222333333345678899999887 465443 444444

>3cm3_A Late protein H1, dual specificity protein phosphatase; dual-specificity phosphatase, VH1, hydrolase; 1.32A {Vaccinia virus} PDB: 2rf6_A 2p4d_A

Probab=86.90  E-value=0.84  Score=29.15  Aligned_cols=28  Identities=11%  Similarity=0.194  Sum_probs=17.9

Q ss_pred             HHHHHhhcCCCCeEEEEeCCC-chHHHHH
Q 041947           60 LTQVASVCSKEDHIIVVCNSG-GRALRAC   87 (126)
Q Consensus        60 ~~~~~~~~~~~~~ivvyc~~g-~~s~~~~   87 (126)
                      ...+......+.+|+|+|..| +|+...+
T Consensus        98 ~~~i~~~~~~~~~VlVHC~aG~~RSg~~v  126 (176)
T 3cm3_A           98 TAFLSKCDQRNEPVLVHSAAGVNRSGAMI  126 (176)
T ss_dssp             HHHHHHHHHHTCCEEEECSSSSSHHHHHH
T ss_pred             HHHHHHHHHCCCcEEEECCcCCCHHHHHH
Confidence            333443334578899999987 6765543

>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens}

Probab=86.23  E-value=1.6  Score=29.02  Aligned_cols=73  Identities=15%  Similarity=0.101  Sum_probs=35.5

Q ss_pred             CCcEEEecCChhh-hcccCCCCccccccccccccCCCC-ChHHHHHHHhhcCCCCeEEEEeCCC-chHHH-HHHHHHh
Q 041947           19 SGHRFLDVRTTEE-FNESHVHGALNVPYLFITQEGRVK-NPEFLTQVASVCSKEDHIIVVCNSG-GRALR-ACVDLRN   92 (126)
Q Consensus        19 ~~~~iiDvR~~~e-~~~ghI~ga~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivvyc~~g-~~s~~-~~~~l~~   92 (126)
                      +=..|||++.... +...+| .-.++|+.......... -.+....+...+..+.+|+|+|..| .|+.. ++.+|..
T Consensus        31 GIt~VInl~~e~~~~~~~gi-~y~~ipi~D~~~~~l~~~~~~~~~fI~~~~~~~~~VLVHC~aG~sRSgtvv~AYLm~  107 (211)
T 2g6z_A           31 HITALLNVSRRTSEACMTHL-HYKWIPVEDSHTADISSHFQEAIDFIDCVREKGGKVLVHSEAGISRSPTICMAYLMK  107 (211)
T ss_dssp             TCCEEEECSSCCCCTTCTTS-EEEECCCCSSTTSCCGGGHHHHHHHHHHHHHTTCCEEEEESSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCCCccccccCC-EEEEeeCCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCcHHHHHHHHHHH
Confidence            4458999997532 111111 12345543221111100 0223333333345678999999988 67764 3445544

>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}

Probab=84.79  E-value=1.2  Score=27.79  Aligned_cols=22  Identities=32%  Similarity=0.282  Sum_probs=15.2

Q ss_pred             CCCeEEEEeCCC-chHHHHHHHH
Q 041947           69 KEDHIIVVCNSG-GRALRACVDL   90 (126)
Q Consensus        69 ~~~~ivvyc~~g-~~s~~~~~~l   90 (126)
                      ++.+|+|+|..| +|+...+...
T Consensus       108 ~~~~vlVHC~aG~~RTg~~~a~~  130 (167)
T 3s4o_A          108 PPPTIGVHCVAGLGRAPILVALA  130 (167)
T ss_dssp             CCCEEEEECSSSSSHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHH
Confidence            378999999877 5665544433

>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual specificity phosphatase, DUSP13, testis and skeletal muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A

Probab=83.90  E-value=6.6  Score=25.64  Aligned_cols=25  Identities=20%  Similarity=0.275  Sum_probs=17.6

Q ss_pred             CCCeEEEEeCCC-chHHHH-HHHHHhc
Q 041947           69 KEDHIIVVCNSG-GRALRA-CVDLRNA   93 (126)
Q Consensus        69 ~~~~ivvyc~~g-~~s~~~-~~~l~~~   93 (126)
                      .+.+|+|+|..| +||... +.+|...
T Consensus       130 ~~~~VLVHC~aG~sRS~tvv~aYLm~~  156 (205)
T 2pq5_A          130 PQGRVLVHCAMGVSRSATLVLAFLMIY  156 (205)
T ss_dssp             TTCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            678899999988 777643 4445543

>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual specific phosphatase, COMP with peptide, hydrolase; 2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A

Probab=83.71  E-value=3  Score=26.82  Aligned_cols=23  Identities=30%  Similarity=0.277  Sum_probs=16.1

Q ss_pred             CCCCeEEEEeCCC-chHHHHHHHH
Q 041947           68 SKEDHIIVVCNSG-GRALRACVDL   90 (126)
Q Consensus        68 ~~~~~ivvyc~~g-~~s~~~~~~l   90 (126)
                      .++.+|+|.|..| +|+...+...
T Consensus       115 ~~~~~VlVHC~aG~gRSg~~va~~  138 (189)
T 3rz2_A          115 EPGCCIAVHCVAGLGRAPVLVALA  138 (189)
T ss_dssp             STTCEEEEECSSSSTTHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHH
Confidence            5778999999877 5665544433

>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*

Probab=83.36  E-value=1.7  Score=26.82  Aligned_cols=31  Identities=16%  Similarity=0.188  Sum_probs=20.1

Q ss_pred             HHHhhcCCCCeEEEEeCCCc-hHHHH-HHHHHh
Q 041947           62 QVASVCSKEDHIIVVCNSGG-RALRA-CVDLRN   92 (126)
Q Consensus        62 ~~~~~~~~~~~ivvyc~~g~-~s~~~-~~~l~~   92 (126)
                      .+......+.+|+|+|..|. |+... +..|..
T Consensus        81 ~i~~~~~~~~~vlVHC~~G~~Rsg~~~~a~l~~  113 (157)
T 3rgo_A           81 FALKYQALGQCVYVHCKAGRSRSATMVAAYLIQ  113 (157)
T ss_dssp             HHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCEEEEECCCCCChHHHHHHHHHHH
Confidence            33333456789999999885 77665 444444

>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA, project on protein structural and functional analyses; 1.67A {Homo sapiens}

Probab=82.91  E-value=1.5  Score=27.03  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=18.0

Q ss_pred             CCCeEEEEeCCC-chHH-HHHHHHHhc
Q 041947           69 KEDHIIVVCNSG-GRAL-RACVDLRNA   93 (126)
Q Consensus        69 ~~~~ivvyc~~g-~~s~-~~~~~l~~~   93 (126)
                      .+.+|+|+|..| +|+. .++.+|...
T Consensus        84 ~~~~vlVHC~aG~~RSg~~~~ayl~~~  110 (151)
T 2e0t_A           84 PGGKILVHCAVGVSRSATLVLAYLMLY  110 (151)
T ss_dssp             TTCCEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCChHHHHHHHHHHHH
Confidence            678999999988 7777 444545443

>3v0d_A Voltage-sensor containing phosphatase; PTP, hydrolase; HET: PO4; 1.10A {Ciona intestinalis} PDB: 3v0f_A* 3v0g_A 3v0h_A* 3awf_A 3v0j_A 3awe_A 3awg_A 3v0e_A 3v0i_A

Probab=82.16  E-value=1.9  Score=30.92  Aligned_cols=81  Identities=11%  Similarity=0.144  Sum_probs=42.4

Q ss_pred             CHHHHHHhh----hCCcEEEecCChhhhcccCCCCcc-ccccccccccCCCCCh---HHHHHHHhhc--CCCCeEEEEeC
Q 041947            9 GVDTAKDLL----SSGHRFLDVRTTEEFNESHVHGAL-NVPYLFITQEGRVKNP---EFLTQVASVC--SKEDHIIVVCN   78 (126)
Q Consensus         9 ~~~~l~~~~----~~~~~iiDvR~~~e~~~ghI~ga~-~i~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~ivvyc~   78 (126)
                      ..+++...+    .+...|++++++..|......+.+ ++|+...   ...+.+   .+...+...+  +++..|+|.|.
T Consensus        51 ~i~dv~~~L~~~h~~~y~V~NL~sE~~Yd~~~f~~~v~~~p~pD~---~~P~~~~l~~~~~~v~~~l~~~~~~~v~vHC~  127 (339)
T 3v0d_A           51 PIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFDNHVYRVMIDDH---NVPTLVDLLKFIDDAKVWMTSDPDHVIAIHSK  127 (339)
T ss_dssp             EHHHHHHHHHHHSTTCEEEEEEETTCCCCGGGGTTCEEEEEECTT---SCCCHHHHHHHHHHHHHHHHTCTTCEEEEECS
T ss_pred             CHHHHHHHHHHhCCCceEEEECCCCCCCChHHcCCeEEEeccCCC---CCCCHHHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence            356666666    467899999876666655444332 3444311   111111   2222332222  45678999998


Q ss_pred             CC-chHHH-HHHHHHh
Q 041947           79 SG-GRALR-ACVDLRN   92 (126)
Q Consensus        79 ~g-~~s~~-~~~~l~~   92 (126)
                      .| .|+.. ++.+|..
T Consensus       128 ~G~gRtg~~ia~~Li~  143 (339)
T 3v0d_A          128 GGKGRTGTLVSSWLLE  143 (339)
T ss_dssp             SSSHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHH
Confidence            66 34433 3444443

>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens}

Probab=80.50  E-value=2.4  Score=26.02  Aligned_cols=26  Identities=15%  Similarity=0.313  Sum_probs=18.4

Q ss_pred             cCCCCeEEEEeCCC-chHHHH-HHHHHh
Q 041947           67 CSKEDHIIVVCNSG-GRALRA-CVDLRN   92 (126)
Q Consensus        67 ~~~~~~ivvyc~~g-~~s~~~-~~~l~~   92 (126)
                      ...+.+|+|+|..| +|+... +.+|..
T Consensus        80 ~~~~~~VlVHC~~G~~RSg~~~~ayl~~  107 (149)
T 1zzw_A           80 HQCGKGLLIHCQAGVSRSATIVIAYLMK  107 (149)
T ss_dssp             HHTTCEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             HHcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            34678999999988 787764 344544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	126
d1tq1a_	119	c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senesc	2e-24
d1yt8a4	130	c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase	8e-12
d1c25a_	161	c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId:	2e-11
d2gwfa1	135	c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal h	5e-10
d1hzma_	154	c.46.1.1 (A:) Erk2 binding domain of Mapk phosphat	6e-10
d1ymka1	174	c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens)	1e-09
d1gmxa_	108	c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia	2e-09
d1yt8a1	136	c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase	2e-07
d1yt8a2	101	c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase P	3e-07
d1e0ca2	136	c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacte	6e-07
d1uara1	143	c.46.1.2 (A:2-144) Sulfurtransferase {Thermus ther	2e-06
d1e0ca1	135	c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter	7e-06
d1qxna_	137	c.46.1.3 (A:) Polysulfide-sulfur transferase (sulf	3e-05
d1urha1	147	c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransf	9e-05
d1okga2	139	c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtran	1e-04
d1yt8a3	157	c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase	2e-04
d1urha2	120	c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtran	8e-04

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 88.0 bits (217), Expect = 2e-24
 Identities = 54/106 (50%), Positives = 69/106 (65%), Gaps = 3/106 (2%)

Query: 7   SVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV 66
           SV V  A DLL +GHR+LDVRT EEF++ H  GA+NVPY+     G  KN +FL QV+S 
Sbjct: 9   SVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSH 68

Query: 67  CSKEDHIIVVCNSGGRALRACVDLRNAH---VTKLEGGYSAWVDEG 109
             + D+IIV C SGGR+++A  DL +A    V  + GGYSAW   G
Sbjct: 69  FGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNG 114

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 56.1 bits (134), Expect = 8e-12
 Identities = 27/120 (22%), Positives = 41/120 (34%), Gaps = 15/120 (12%)

Query: 4   DVASVGVDTAKDLLSSGHR---FLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFL 60
            V  + +           R    LDVRT EE+   H+ G+ + P   + QE         
Sbjct: 21  GVERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQLVQETDHVASV-- 78

Query: 61  TQVASVCSKEDHIIVVCNSGGRALRACVDLRNAH--VTKLEGGYSAWVDEGVAGDKPLEE 118
                   +   +++V + G RA  +   L      V  L+G   A   E  A   PL  
Sbjct: 79  --------RGARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSEADFSERGAWSAPLPR 130

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (134), Expect = 2e-11
 Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 26/126 (20%)

Query: 4   DVASVGVDTAKDLLSSGHR-------FLDVRTTEEFNESHVHGALNVPYLFITQEGRVKN 56
           D+  +  +    +L+            +D R   E+   H+ GA+N+      ++  +K 
Sbjct: 21  DLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVEDFLLKK 80

Query: 57  PEFLTQVASVCSKEDHIIVVCNSGG-RALRACVDLRNA-------------HVTKLEGGY 102
           P   T       K   ++  C     R  R C  +R                +  L+GGY
Sbjct: 81  PIVPTD-----GKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGY 135

Query: 103 SAWVDE 108
             +  +
Sbjct: 136 KEFFMK 141

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (122), Expect = 5e-10
 Identities = 18/126 (14%), Positives = 43/126 (34%), Gaps = 24/126 (19%)

Query: 7   SVGVDTAKDLLSSGHR---FLDVRTTEEFNESHVHGALNVPYLFIT-----QEGRVKNPE 58
           ++       +++  +     +D R  +++ +S +  +L+VP   I+            P+
Sbjct: 2   AITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPD 61

Query: 59  FLTQVASVCSKEDHIIVVCNSGG-------RALRACVDLRNAHVTK---------LEGGY 102
                       ++++++              LR+  D      +K         LEGGY
Sbjct: 62  DSKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGY 121

Query: 103 SAWVDE 108
             W+  
Sbjct: 122 ENWLLC 127

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 6e-10
 Identities = 23/127 (18%), Positives = 36/127 (28%), Gaps = 26/127 (20%)

Query: 7   SVGVDTAKDLLSSGH---RFLDVRTTEEFNESHVHGALNVPYL----------FITQEGR 53
           S  V    + L  G+     +D R  E +  SH+  A+NV              +     
Sbjct: 17  SKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRAL 76

Query: 54  VKNPEFLTQVASVCSKEDHIIVVCNSG---GRALRACVDLRNAH---------VTKLEGG 101
               E   +    C   D +++   S             L                LEGG
Sbjct: 77  FTRGEDRDRFTRRC-GTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLEGG 135

Query: 102 YSAWVDE 108
           +S +  E
Sbjct: 136 FSKFQAE 142

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 1e-09
 Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 25/126 (19%)

Query: 4   DVASVGVDTAKDLLSSGHR-------FLDVRTTEEFNESHVHGALNVPYLFITQEGRVKN 56
           D+  +  +T   LL+            +D R   E+   H+  A+N+P     +   +K+
Sbjct: 21  DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKS 80

Query: 57  PEFLTQVASVCSKEDHIIVVC-NSGGRALRACVDLRNA-------------HVTKLEGGY 102
           P           K   +I  C  S  R  R C  +R                +  L+GGY
Sbjct: 81  PIAPCS----LDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGY 136

Query: 103 SAWVDE 108
             +  +
Sbjct: 137 KEFFPQ 142

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

 Score = 49.3 bits (117), Expect = 2e-09
 Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 16/103 (15%)

Query: 7   SVGVDTAKDLLSSGH-RFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVAS 65
            + V  A   L       +D+R  + F   H                      F+     
Sbjct: 6   CINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQ--------AFHLTNDTLGAFMRD--- 54

Query: 66  VCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAW 105
               +  ++V+C  G  +  A   L       V  ++GG+ AW
Sbjct: 55  -NDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW 96

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.9 bits (105), Expect = 2e-07
 Identities = 25/120 (20%), Positives = 40/120 (33%), Gaps = 20/120 (16%)

Query: 4   DVASVGVDTAKDLLS--SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLT 61
              S+  +  + LL   +    LD R  +E+    + G ++VP   +        P+   
Sbjct: 22  HTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGAELVLRVAELAPDP-- 79

Query: 62  QVASVCSKEDHIIVVCNSGGRALRACVDLRNA----HVTKLEGGYSAWVDEGVAGDKPLE 117
                      +IV C    R++     L NA     V  L  G   W   G    + LE
Sbjct: 80  --------RTRVIVNCAGRTRSIIGTQSLLNAGIPNPVAALRNGTIGWTLAG----QQLE 127

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.5 bits (101), Expect = 3e-07
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 9/107 (8%)

Query: 5   VASVGVDTAKDLLSSGHRF--LDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQ 62
           +A       +  L +      LDVR  + F ++H   A N+P   +  E   + P   T 
Sbjct: 1   IAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARVPRRDTP 60

Query: 63  VASVCSKEDHIIVVCNSGGRALRACVDLRNAHVTKLEGGYSAWVDEG 109
           +                   A +   DL  + V  L+GG S W + G
Sbjct: 61  I-------TVYDDGEGLAPVAAQRLHDLGYSDVALLDGGLSGWRNAG 100

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 43.4 bits (101), Expect = 6e-07
 Identities = 19/129 (14%), Positives = 38/129 (29%), Gaps = 18/129 (13%)

Query: 4   DVASVGVDTAKDLLSSGH-RFLDVRTTEEFNESHVHGA-----------LNVPYLFITQE 51
           D  +   D     L +      D R+ +E+    V  A                +  ++ 
Sbjct: 10  DEPTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRA 69

Query: 52  GRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDE 108
            R++            + +  I+  C +  R+    +  +      V    G +  W   
Sbjct: 70  LRIRTDIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEW--- 126

Query: 109 GVAGDKPLE 117
           G   D P+E
Sbjct: 127 GNHPDTPVE 135

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 42.2 bits (98), Expect = 2e-06
 Identities = 17/107 (15%), Positives = 37/107 (34%), Gaps = 10/107 (9%)

Query: 13  AKDLLSSGHRFLDVRT-TEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCS--- 68
            + L     R L+V      ++  H+ GA  + +     +  V++     + A +     
Sbjct: 15  QEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAKLMERLG 74

Query: 69  --KEDHIIVVCNSGG----RALRACVDLRNAHVTKLEGGYSAWVDEG 109
              +  +++  +        A        +  V  + GG   WV+EG
Sbjct: 75  ISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEG 121

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 40.5 bits (93), Expect = 7e-06
 Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 16/122 (13%)

Query: 8   VGVDTAKDLLSSGH-RFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNP--------E 58
           +     +  LS+     +D+ +   + E H+ GA  V                      E
Sbjct: 11  IEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLE 70

Query: 59  FLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNAH---VTKLEGGYSAWVDEGVAGDKP 115
            L        +  +++     GG A R    L          L GG +AW+ E     +P
Sbjct: 71  SLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAED----RP 126

Query: 116 LE 117
           L 
Sbjct: 127 LS 128

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

 Score = 38.7 bits (89), Expect = 3e-05
 Identities = 18/108 (16%), Positives = 31/108 (28%), Gaps = 6/108 (5%)

Query: 4   DVASVGVDTAKDLLSSGH--RFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLT 61
           D+  +    A  LL        +DVR  +E          N  ++   +   +     L 
Sbjct: 21  DMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAKSGLD 80

Query: 62  QVASVCSKEDHIIVVCNSGGRALRACVDLRNAHVTKLEGGYSAWVDEG 109
               V                A +   +     +   EGG   W++EG
Sbjct: 81  PEKPVVVFCKT----AARAALAGKTLREYGFKTIYNSEGGMDKWLEEG 124

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (86), Expect = 9e-05
 Identities = 21/133 (15%), Positives = 38/133 (28%), Gaps = 28/133 (21%)

Query: 10  VDT---AKDLLSSGHRFLDVRTT----------EEFNESHVHGALNVPYLFITQEGRVKN 56
           V     A+ +     + +D R            +E+   H+ GA+      ++       
Sbjct: 5   VGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLP 64

Query: 57  PEFLTQVASVC-------SKEDHIIVVCNSGG----RALRACVDLRNAHVTKLEGGYSAW 105
                             +++ H+IV          RA           V+ L GG + W
Sbjct: 65  HMLPRPETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGW 124

Query: 106 VDEGVAGDKPLEE 118
             +       LEE
Sbjct: 125 QRDD----LLLEE 133

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]} Length = 139

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

 Score = 37.1 bits (85), Expect = 1e-04
 Identities = 21/122 (17%), Positives = 37/122 (30%), Gaps = 32/122 (26%)

Query: 24  LDVRTTEEFN-----------ESHVHGALNVPY-----------LFITQEGRVKNPEFLT 61
            D R+ + F              H+ GA N+PY           +  ++E    N   + 
Sbjct: 16  TDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVV 75

Query: 62  QVASVCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAW-------VDEGVA 111
           Q A   +     +  C SG  A      + +    H     G +S +       +   + 
Sbjct: 76  QGAGDAADLSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIMRSII 135

Query: 112 GD 113
            D
Sbjct: 136 DD 137

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 157

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.9 bits (84), Expect = 2e-04
 Identities = 22/110 (20%), Positives = 33/110 (30%), Gaps = 16/110 (14%)

Query: 4   DVASVGVDTAKDLLSSG-HRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQ 62
              ++   T  D L     R LD   +  + + H+                      L Q
Sbjct: 3   RADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIP------------GAAWVLRSQLKQ 50

Query: 63  VASVCSKEDHIIVVCNSGGRA---LRACVDLRNAHVTKLEGGYSAWVDEG 109
                   +  ++ C S   A   +     L    V  L+GG SAWV  G
Sbjct: 51  ALERLGTAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVAAG 100

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

 Score = 34.6 bits (78), Expect = 8e-04
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 16/104 (15%)

Query: 18  SSGHRFLDVRTTEEFN-----------ESHVHGALNVPYLFITQEGRVKNPEFLTQVASV 66
            +  + +D R    FN             H+ GALNVP+  + +EG +K  + L  +   
Sbjct: 17  ENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFG 76

Query: 67  C--SKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAW 105
              S +  IIV C SG  A    + L      +V   +G +S W
Sbjct: 77  RGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	126
d1tq1a_	119	Thiosulfate sulfurtransferase/Senescence-associate	99.95
d1yt8a1	136	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.94
d1uara1	143	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.94
d1yt8a3	157	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.94
d1urha1	147	3-mercaptopyruvate sulfurtransferase {Escherichia	99.94
d1e0ca2	136	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.94
d1gmxa_	108	Sulfurtransferase GlpE {Escherichia coli [TaxId: 5	99.93
d1yt8a2	101	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.93
d1rhsa1	149	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1e0ca1	135	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.92
d1qxna_	137	Polysulfide-sulfur transferase (sulfide dehydrogen	99.92
d1yt8a4	130	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.92
d1t3ka_	132	Dual specificity phosphatase Cdc25 {Thale cress (A	99.91
d1okga1	156	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.91
d1uara2	141	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.9
d1rhsa2	144	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1urha2	120	3-mercaptopyruvate sulfurtransferase {Escherichia	99.88
d1okga2	139	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.84
d1c25a_	161	CDC25a {Human (Homo sapiens) [TaxId: 9606]}	99.81
d2gwfa1	135	Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Hum	99.81
d1hzma_	154	Erk2 binding domain of Mapk phosphatase mkp-3 {Hum	99.78
d1ymka1	174	CDC25b {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1xria_	151	Putative phosphatase At1g05000 {Thale cress (Arabi	94.98
d1fpza_	176	Kinase associated phosphatase (kap) {Human (Homo s	90.13
d1ywfa1	272	Phosphotyrosine protein phosphatase PtpB {Mycobact	89.53
d1jl3a_	137	Arsenate reductase ArsC {Bacillus subtilis [TaxId:	87.4
d1m3ga_	145	Mapk phosphatase {Human (Homo sapiens), pac-1 [Tax	86.6
d1c4oa2	174	Nucleotide excision repair enzyme UvrB {Thermus th	86.24
d1ohea2	182	Proline directed phosphatase CDC14b2 {Human (Homo	84.16

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.95  E-value=3.1e-28  Score=151.10  Aligned_cols=109  Identities=50%  Similarity=0.822  Sum_probs=95.7

Q ss_pred             CceeCHHHHHHhhhCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHH
Q 041947            5 VASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRAL   84 (126)
Q Consensus         5 ~~~i~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~   84 (126)
                      ...|++.++.+++..+.+|||+|++.||..||||||+|+|+..+..........+...+...++++++||+||.+|.||.
T Consensus         7 p~~i~~~~a~~l~~~g~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~C~~G~rs~   86 (119)
T d1tq1a_           7 PSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSGGRSI   86 (119)
T ss_dssp             CEEEEHHHHHHHHHHTCCEEEESCHHHHHHCCBTTBEECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEESSCSHHH
T ss_pred             CCccCHHHHHHHHHCcCEEEECCCHHHHHcCCCCCccchhhcccccccccccHHHHHHHHHhcCCCcEEEEEcCCcCcHH
Confidence            34688888888886678999999999999999999999998776665555667777777777789999999999999999


Q ss_pred             HHHHHHHhc---CcceecccHHhHHhCCCCCC
Q 041947           85 RACVDLRNA---HVTKLEGGYSAWVDEGVAGD  113 (126)
Q Consensus        85 ~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~  113 (126)
                      .++..|.+.   +|++|.||+.+|.++|+|++
T Consensus        87 ~a~~~L~~~G~~nv~~l~GG~~~W~~~g~P~e  118 (119)
T d1tq1a_          87 KATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK  118 (119)
T ss_dssp             HHHHHHHHHHCCSEEEEECCHHHHHHHTCCCC
T ss_pred             HHHHHHHhcccCCeEEecChHHHHHHCCCCcc
Confidence            999999988   89999999999999999986

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=4.4e-27  Score=148.98  Aligned_cols=101  Identities=25%  Similarity=0.426  Sum_probs=89.2

Q ss_pred             CCceeCHHHHHHhh--hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc-CCCCeEEEEeCCC
Q 041947            4 DVASVGVDTAKDLL--SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC-SKEDHIIVVCNSG   80 (126)
Q Consensus         4 ~~~~i~~~~l~~~~--~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ivvyc~~g   80 (126)
                      ..+.|+++++.+++  +++.+|||+|++.||..||||||+|+|..           ++...+..+. +++++||+||.+|
T Consensus        22 ~~~~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpGAi~ip~~-----------~l~~~~~~l~~~~~~~iV~~C~~g   90 (136)
T d1yt8a1          22 HTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGA-----------ELVLRVAELAPDPRTRVIVNCAGR   90 (136)
T ss_dssp             CCCEECHHHHHHHHHTTCSEEEEECSCHHHHHHSBCTTCEECCGG-----------GHHHHHHHHCCSTTSEEEEECSSS
T ss_pred             CCCccCHHHHHHHHhcCCCcEEEEcCChhhccceecCCchhhhhh-----------HHHHHhhcccccccceEEEEcCCC
Confidence            45689999999988  45689999999999999999999999986           4556666663 5678899999999


Q ss_pred             chHHHHHHHHHhc---C-cceecccHHhHHhCCCCCCCC
Q 041947           81 GRALRACVDLRNA---H-VTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        81 ~~s~~~~~~l~~~---~-v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      .++..++.+|.+.   + |++|.||+.+|..+|+|+++.
T Consensus        91 ~rs~~aa~~L~~~G~~~~V~~L~GG~~~W~~~G~pve~g  129 (136)
T d1yt8a1          91 TRSIIGTQSLLNAGIPNPVAALRNGTIGWTLAGQQLEHG  129 (136)
T ss_dssp             HHHHHHHHHHHHTTCSSCEEEETTHHHHHHHTTCCCBCS
T ss_pred             CchHHHHHHHHHcCCCceEEEeCCcHHHHHHCCCCceeC
Confidence            9999999999988   4 899999999999999999877

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=2.2e-27  Score=151.55  Aligned_cols=119  Identities=16%  Similarity=0.223  Sum_probs=92.9

Q ss_pred             CCCceeCHHHHHHhh-hCCcEEEecCC-hhhhcccCCCCcccccccccccc----CCCCChHHHHHHHhh-cCCCCeEEE
Q 041947            3 GDVASVGVDTAKDLL-SSGHRFLDVRT-TEEFNESHVHGALNVPYLFITQE----GRVKNPEFLTQVASV-CSKEDHIIV   75 (126)
Q Consensus         3 ~~~~~i~~~~l~~~~-~~~~~iiDvR~-~~e~~~ghI~ga~~i~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~ivv   75 (126)
                      +|...||+++|++.+ +++++|||+|. ..+|..||||||+|+++......    .....+.|...+... ++++++||+
T Consensus         4 ~p~~lVs~~~l~~~l~~~~v~iiDvr~~~~~y~~gHIPgAi~~~~~~~~~~~~~~~l~~~~~l~~~~~~~Gi~~~~~iVv   83 (143)
T d1uara1           4 HPEVLVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAKLMERLGISNDTTVVL   83 (143)
T ss_dssp             CGGGEECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEE
T ss_pred             CCCccCcHHHHHHHhCCCCeEEEECCCCHHHHhcCCCCCcccccccccccccccccchhhHHHHHHhhhhccCCCceEEE
Confidence            355689999999999 67899999995 77899999999999998654322    123345677777776 789999999


Q ss_pred             EeCCCchHHHHHHHHHh-c---CcceecccHHhHHhCCCCCCCCcccccc
Q 041947           76 VCNSGGRALRACVDLRN-A---HVTKLEGGYSAWVDEGVAGDKPLEELKI  121 (126)
Q Consensus        76 yc~~g~~s~~~~~~l~~-~---~v~~l~gG~~~w~~~g~~~~~~~~~~~~  121 (126)
                      ||.++..++..+.++++ +   +|++|+||+.+|+.+|+|+++.+..+.+
T Consensus        84 y~~~~~~~a~~~~~~l~~~G~~~V~vldGG~~~W~~~g~p~~~~~~~~~~  133 (143)
T d1uara1          84 YGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLTTEVPSYPP  133 (143)
T ss_dssp             ECHHHHHHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCCCBCCCCCCCC
T ss_pred             ecCCCcccchhHHHHHHHhCCceEEEEcCcHHHHHHCCCCccCCCCCCCC
Confidence            99877665554555554 4   9999999999999999999987554443

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=2.1e-26  Score=148.99  Aligned_cols=101  Identities=24%  Similarity=0.397  Sum_probs=89.3

Q ss_pred             CCCceeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCc
Q 041947            3 GDVASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGG   81 (126)
Q Consensus         3 ~~~~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~   81 (126)
                      +.+..|+++++.+++ +++.+|||+|+..+|.+||||||+|+|..           .+...+... +++++||+||.+|.
T Consensus         2 P~~~~Is~~el~~~l~~~~~~ivDvR~~~e~~~ghIpga~~~~~~-----------~~~~~~~~~-~~~~~vv~~c~~g~   69 (157)
T d1yt8a3           2 PRADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRS-----------QLKQALERL-GTAERYVLTCGSSL   69 (157)
T ss_dssp             CCCCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCTTCEECCGG-----------GHHHHHHHH-CCCSEEEEECSSSH
T ss_pred             CCCCEECHHHHHHHHhCCCeEEEEeCCHHHHhhcccccceecccc-----------ccccccccc-ccCcceeeccCCcc
Confidence            356789999999999 67799999999999999999999999986           333444444 78999999999999


Q ss_pred             hHHHHHHHHHhc---CcceecccHHhHHhCCCCCCCC
Q 041947           82 RALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        82 ~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      +|..++..|...   +|++|.||+.+|..+|+|+++.
T Consensus        70 rs~~~a~~l~~~G~~~v~~L~GG~~~W~~aGlp~~~~  106 (157)
T d1yt8a3          70 LARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTEDG  106 (157)
T ss_dssp             HHHHHHHHHHHHHCSCEEEETTHHHHHHHTTCCCBCS
T ss_pred             hHHHHHHHHhcccCceEEEecCCHHHHhhCCCCCcCC
Confidence            999999888888   9999999999999999999987

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.1e-26  Score=148.92  Aligned_cols=116  Identities=21%  Similarity=0.308  Sum_probs=91.5

Q ss_pred             ceeCHHHHHHhh-hCCcEEEecC----------ChhhhcccCCCCccccccccccccC-----CC-CChHHHHHHHhh-c
Q 041947            6 ASVGVDTAKDLL-SSGHRFLDVR----------TTEEFNESHVHGALNVPYLFITQEG-----RV-KNPEFLTQVASV-C   67 (126)
Q Consensus         6 ~~i~~~~l~~~~-~~~~~iiDvR----------~~~e~~~ghI~ga~~i~~~~~~~~~-----~~-~~~~~~~~~~~~-~   67 (126)
                      ..|++++|.+.| +++++|||+|          ...+|..||||||+|+++..+.+..     .+ ..+++...+... +
T Consensus         3 ~lVs~~wL~~~L~~~~v~iiD~r~~~~~~~~~~~~~~y~~gHIPGAi~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~Gi   82 (147)
T d1urha1           3 WFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPETFAVAMRELGV   82 (147)
T ss_dssp             CEECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSSSSSSCCCCHHHHHHHHHHTTC
T ss_pred             ccCcHHHHHHHhCCCCeEEEEeeCCCCCccCccHHHHHHhCCccccEEeehhhhccccccccccCCCHHHHHHHHHHhCc
Confidence            368999999999 7889999999          3457999999999999987664421     22 346677777777 8


Q ss_pred             CCCCeEEEEeCCCchH-HHHHHHHHhc---CcceecccHHhHHhCCCCCCCCcccccc
Q 041947           68 SKEDHIIVVCNSGGRA-LRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKPLEELKI  121 (126)
Q Consensus        68 ~~~~~ivvyc~~g~~s-~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~~~~~~~  121 (126)
                      +++++||+||.++..+ .++++.|..+   +|++|+||+.+|+++|+|+++.+..+++
T Consensus        83 ~~~~~vVvY~~~~~~~A~r~~~~L~~~G~~~V~vLdGG~~~W~~~g~pv~~~~~~~~~  140 (147)
T d1urha1          83 NQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEEGAVELPE  140 (147)
T ss_dssp             CTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBBSCCCCCC
T ss_pred             CCCCeEEEEeCCCcccchhHHHHHHhhcccceEEeCChHHHHHHcCCCccCCCCCCCC
Confidence            9999999999876554 4444444444   9999999999999999999988655554

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.94  E-value=2.5e-26  Score=145.46  Aligned_cols=111  Identities=14%  Similarity=0.275  Sum_probs=92.5

Q ss_pred             CCCceeCHHHHHHhh-hCCcEEEecCChhhhc--------ccCCCCccccccccccccC--CCCChHHHHHHHhh-cCCC
Q 041947            3 GDVASVGVDTAKDLL-SSGHRFLDVRTTEEFN--------ESHVHGALNVPYLFITQEG--RVKNPEFLTQVASV-CSKE   70 (126)
Q Consensus         3 ~~~~~i~~~~l~~~~-~~~~~iiDvR~~~e~~--------~ghI~ga~~i~~~~~~~~~--~~~~~~~~~~~~~~-~~~~   70 (126)
                      ++...++.+++++.+ +++.+|||+|++.+|.        .||||||+|+|+..+.+..  ....+++...+... ++++
T Consensus         9 ~~~~~~s~d~l~~~l~~~~~~liD~R~~~ey~G~~~~~~~~GhIPGAinip~~~~~~~~~~~~~~~~l~~~~~~~gi~~~   88 (136)
T d1e0ca2           9 HDEPTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEELGITPD   88 (136)
T ss_dssp             CSTTBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCGGGGEEGGGTTEECTTHHHHHHHTTCCTT
T ss_pred             CCCceEcHHHHHHhhCCCCeEEEECcChHHhcccccccccCCcchhHhhhhhhhhhccccccchhHHHhhhhhhcccCCC
Confidence            466789999999999 6789999999999996        6899999999998764432  22346777777766 7899


Q ss_pred             CeEEEEeCCCchHHHHHHHHHhc---CcceecccHHhHHh-CCCCCC
Q 041947           71 DHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVD-EGVAGD  113 (126)
Q Consensus        71 ~~ivvyc~~g~~s~~~~~~l~~~---~v~~l~gG~~~w~~-~g~~~~  113 (126)
                      ++||+||++|.+|..++..|..+   +|++|+||+..|.+ .++|++
T Consensus        89 ~~vV~yC~~G~~a~~~~~~l~~~G~~~v~~ydGg~~eW~~~~~~PvE  135 (136)
T d1e0ca2          89 KEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVE  135 (136)
T ss_dssp             SEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHHHTTCTTCCCB
T ss_pred             CceEEeCCChHHHHHHHHHHHHcCCCCcEEecCCHHHHhcCCCCCCc
Confidence            99999999999999888777766   89999999999976 588765

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.2e-26  Score=141.56  Aligned_cols=98  Identities=18%  Similarity=0.351  Sum_probs=85.8

Q ss_pred             CCCceeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCc
Q 041947            3 GDVASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGG   81 (126)
Q Consensus         3 ~~~~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~   81 (126)
                      ..++.||++++.+++ +++.+|||+|++.||..||||||+|+|.+           ++...+.. ++++++||+||.+|.
T Consensus         2 ~~~~~Is~~e~~~~l~~~~~~liDvR~~~e~~~ghI~gA~~ip~~-----------~l~~~~~~-~~~~~~ivv~c~~g~   69 (108)
T d1gmxa_           2 DQFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTND-----------TLGAFMRD-NDFDTPVMVMCYHGN   69 (108)
T ss_dssp             CSCEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEECCHH-----------HHHHHHHH-SCTTSCEEEECSSSS
T ss_pred             CCCCEeCHHHHHHHHHCCCeEEEECCCHHHHHhcCCCCcccccch-----------hHHHHhhh-ccccCcccccCCCCh
Confidence            457889999999999 77899999999999999999999999986           44455554 488999999999999


Q ss_pred             hHHHHHHHHHhc---CcceecccHHhHHhCCCCCC
Q 041947           82 RALRACVDLRNA---HVTKLEGGYSAWVDEGVAGD  113 (126)
Q Consensus        82 ~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~  113 (126)
                      ++..++.+|.+.   +|++|.||+.+|.++ +|.+
T Consensus        70 rs~~~a~~L~~~G~~~v~~l~GG~~~W~~~-~p~e  103 (108)
T d1gmxa_          70 SSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAE  103 (108)
T ss_dssp             HHHHHHHHHHHHTCSSEEEETTHHHHHHHH-CGGG
T ss_pred             HHHHHHHHHHHcCCCCEEEEcChHHHHHHc-CCCc
Confidence            999999999988   899999999999754 7754

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=1.6e-25  Score=134.96  Aligned_cols=95  Identities=25%  Similarity=0.342  Sum_probs=81.7

Q ss_pred             CceeCHHHHHHhh--hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh-cCCCCeEEEEeCCCc
Q 041947            5 VASVGVDTAKDLL--SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV-CSKEDHIIVVCNSGG   81 (126)
Q Consensus         5 ~~~i~~~~l~~~~--~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivvyc~~g~   81 (126)
                      +..+|.+++++.+  +++++|||+|++.||..||||||+|+|.+.           +...+... .+.+++||+||.++.
T Consensus         1 ~~v~S~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAi~~~~~~-----------~~~~~~~~~~~~~~~vv~~~~~g~   69 (101)
T d1yt8a2           1 IAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSR-----------LELEIHARVPRRDTPITVYDDGEG   69 (101)
T ss_dssp             CEEECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCEECCGGG-----------HHHHHHHHSCCTTSCEEEECSSSS
T ss_pred             CCcCcHHHHHHHHHCCCCeEEEECCCHHHHHhccCCCcccccccc-----------hhhhhhhcccccCceeeeccchhh
Confidence            3567899999988  678999999999999999999999999863           33444444 357889999999999


Q ss_pred             hHHHHHHHHHhc---CcceecccHHhHHhCCC
Q 041947           82 RALRACVDLRNA---HVTKLEGGYSAWVDEGV  110 (126)
Q Consensus        82 ~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~  110 (126)
                      ++..++..|.+.   +|++|+||+.+|+++|+
T Consensus        70 ~s~~~~~~l~~~G~~nV~~l~GG~~~W~~aGg  101 (101)
T d1yt8a2          70 LAPVAAQRLHDLGYSDVALLDGGLSGWRNAGG  101 (101)
T ss_dssp             HHHHHHHHHHHTTCSSEEEETTHHHHHHHTTC
T ss_pred             hHHHHHHHHHHcCCCcEEEeCChHHHHHHCcC
Confidence            999999999988   89999999999999874

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=3e-25  Score=142.39  Aligned_cols=116  Identities=24%  Similarity=0.280  Sum_probs=91.4

Q ss_pred             ceeCHHHHHHhhh-----CCcEEEecC--------ChhhhcccCCCCccccccccccccC------CCCChHHHHHHHhh
Q 041947            6 ASVGVDTAKDLLS-----SGHRFLDVR--------TTEEFNESHVHGALNVPYLFITQEG------RVKNPEFLTQVASV   66 (126)
Q Consensus         6 ~~i~~~~l~~~~~-----~~~~iiDvR--------~~~e~~~ghI~ga~~i~~~~~~~~~------~~~~~~~~~~~~~~   66 (126)
                      ..||+++|.+.++     ++++|||+|        ...+|.+||||||+|++++.+....      ....+.+...+...
T Consensus         8 ~lVs~~wL~~~L~~~~~~~~~~IiD~r~~~~~~~~~~~~y~~gHIPGAv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   87 (149)
T d1rhsa1           8 ALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLPSEAGFADYVGSL   87 (149)
T ss_dssp             SEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTTSSSSSCCCCHHHHHHHHHHT
T ss_pred             CccCHHHHHHHHhccCCCCCEEEEEecCcCCCCcchHHHHHHhcccCceeccHHhhcccccchhhhhhhhHHHHHHHhhh
Confidence            4689999999992     478999999        3568999999999999987654322      23345677777777


Q ss_pred             -cCCCCeEEEEeCC---CchHHHHHHHHHhc---CcceecccHHhHHhCCCCCCCCcccccc
Q 041947           67 -CSKEDHIIVVCNS---GGRALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKPLEELKI  121 (126)
Q Consensus        67 -~~~~~~ivvyc~~---g~~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~~~~~~~  121 (126)
                       ++++++|||||.+   +..++++++.|..+   +|++|+||+.+|+++|+|+++.+.+++|
T Consensus        88 Gi~~~~~vVvy~~~~~~~~~a~r~~w~L~~~G~~~V~vLdGG~~~W~~~G~pv~~~~~~~~P  149 (149)
T d1rhsa1          88 GISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTSEPSRPEP  149 (149)
T ss_dssp             TCCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCSCCCCCC
T ss_pred             hccCCceeEEeeccCCcchhhhHHHHHHHHcCCCceEEeCCcHHHHHHCcCcccCCCCCCCC
Confidence             8899999999964   34566666666665   8999999999999999999988665543

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.92  E-value=9.7e-25  Score=137.29  Aligned_cols=111  Identities=19%  Similarity=0.194  Sum_probs=83.1

Q ss_pred             ceeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccC-----CCCCh-HHHHHHHhh-cCCCCeEEEEe
Q 041947            6 ASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEG-----RVKNP-EFLTQVASV-CSKEDHIIVVC   77 (126)
Q Consensus         6 ~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~-----~~~~~-~~~~~~~~~-~~~~~~ivvyc   77 (126)
                      ..|+++||++++ +++++|||+|++.+|..||||||+|+|...+....     ..... .+....... ......+++||
T Consensus         9 ~lIs~~el~~~l~~~~~viiDvR~~~ey~~gHIpgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   88 (135)
T d1e0ca1           9 LVIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVYD   88 (135)
T ss_dssp             SEECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCCTTCTTSCCCHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             cEeeHHHHHHHhcCCCeEEEECCCHHHHhcccCccccccchhhhhhcccccchhhcchhhhhhhhccccccccccccccc
Confidence            358999999999 67899999999999999999999999987664332     12222 333333333 45677788887


Q ss_pred             CCCc-hHHHHHHHHHhc---CcceecccHHhHHhCCCCCCCCc
Q 041947           78 NSGG-RALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKPL  116 (126)
Q Consensus        78 ~~g~-~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~~  116 (126)
                      ..+. ++..+++.+...   +|++|+||+.+|+++|+|+++..
T Consensus        89 ~~~~~~~~~~~~~l~~~G~~~V~~l~GG~~~W~~~g~p~~~~~  131 (135)
T d1e0ca1          89 DEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSREL  131 (135)
T ss_dssp             SSSSHHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCCC
T ss_pred             cccCccchhhHHHHHhccCCCEEEecChHHHHHHCCCCCCCCC
Confidence            6554 455555455555   89999999999999999999863

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

Probab=99.92  E-value=4.1e-25  Score=139.97  Aligned_cols=101  Identities=24%  Similarity=0.372  Sum_probs=86.7

Q ss_pred             CCceeCHHHHHHhh--hCCcEEEecCChhhhcccC---CCCccccccccccccCCCCChHHHHHHHhh-cCCCCeEEEEe
Q 041947            4 DVASVGVDTAKDLL--SSGHRFLDVRTTEEFNESH---VHGALNVPYLFITQEGRVKNPEFLTQVASV-CSKEDHIIVVC   77 (126)
Q Consensus         4 ~~~~i~~~~l~~~~--~~~~~iiDvR~~~e~~~gh---I~ga~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivvyc   77 (126)
                      .+..||++++.+++  +++++|||||++.||..+|   |+||+|+|...+           ..++... ++++++|||||
T Consensus        21 ~~~~Isp~e~~~ll~~~~~~~lIDvR~~~E~~~~hip~i~~a~~ip~~~l-----------~~~~~~~~~~~~~~ivvyC   89 (137)
T d1qxna_          21 DMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKL-----------EPLLAKSGLDPEKPVVVFC   89 (137)
T ss_dssp             SSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEEECCTTTS-----------HHHHHHHCCCTTSCEEEEC
T ss_pred             cCCEEcHHHHHHHHHcCcCEEEEECCcHHHHHHhccccccccccCCcccc-----------cccccccccCcccceeeee
Confidence            56789999999999  5679999999999999998   667889997633           2344333 57899999999


Q ss_pred             CCCchHHHHHHHHHhc---CcceecccHHhHHhCCCCCCCC
Q 041947           78 NSGGRALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        78 ~~g~~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      .+|.+|..++..|.+.   +|++|.||+.+|.++|+|+.+.
T Consensus        90 ~~G~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~P~~~~  130 (137)
T d1qxna_          90 KTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDR  130 (137)
T ss_dssp             CSSSCHHHHHHHHHHHTCSCEEEESSCHHHHHHTTCCEECC
T ss_pred             cccchHHHHHHHHHHcCCCcEEEecCHHHHHHHcCCCCCCC
Confidence            9999999999999988   8999999999999999998755

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=4.2e-25  Score=138.76  Aligned_cols=101  Identities=24%  Similarity=0.279  Sum_probs=84.9

Q ss_pred             CCceeCHHHHHHhh---hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh-cCCCCeEEEEeCC
Q 041947            4 DVASVGVDTAKDLL---SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV-CSKEDHIIVVCNS   79 (126)
Q Consensus         4 ~~~~i~~~~l~~~~---~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivvyc~~   79 (126)
                      .+..|+++++.+++   +.+.+|||+|++.||..||||||+|+|...+           ....... .+++++||+||.+
T Consensus        21 ~~~~I~~~e~~~~l~~~~~~~~liDvR~~~e~~~ghipgai~~p~~~~-----------~~~~~~~~~~~~~~ivl~C~~   89 (130)
T d1yt8a4          21 GVERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQL-----------VQETDHVASVRGARLVLVDDD   89 (130)
T ss_dssp             TCEEECHHHHHHHHHCTTSCEEEEECSCHHHHHHCBCTTCEECCHHHH-----------HHSHHHHCCSBTCEEEEECSS
T ss_pred             CCcccCHHHHHHHHHccCCCEEEEECCCcHHHhcCccCCccccccccc-----------ccccccccCCccceEEeecCC
Confidence            46789999999999   3357999999999999999999999999633           2323323 4788999999999


Q ss_pred             CchHHHHHHHHHhc--CcceecccHHhHHhCCCCCCCC
Q 041947           80 GGRALRACVDLRNA--HVTKLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        80 g~~s~~~~~~l~~~--~v~~l~gG~~~w~~~g~~~~~~  115 (126)
                      |.||..++.+|.++  +++++.||+.+|..++...+.+
T Consensus        90 G~rS~~aa~~L~~~G~~v~~l~GG~~aw~~~~g~~~~p  127 (130)
T d1yt8a4          90 GVRANMSASWLAQMGWQVAVLDGLSEADFSERGAWSAP  127 (130)
T ss_dssp             SSHHHHHHHHHHHTTCEEEEECSCCGGGCCBCSSCCCC
T ss_pred             CccHHHHHHHHHHcCCCeEEEcCchHHHHHhcCCCCCC
Confidence            99999999999999  8999999999998877655544

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=3.5e-25  Score=139.42  Aligned_cols=107  Identities=17%  Similarity=0.251  Sum_probs=84.9

Q ss_pred             CCCceeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCC-
Q 041947            3 GDVASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSG-   80 (126)
Q Consensus         3 ~~~~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g-   80 (126)
                      ..+..|+++++.+++ +++.+|||+|++.+|..||||||+|+|...+..       .+ ..+...+.+.+.+|+||..+ 
T Consensus         5 ~~v~~I~~~el~~~~~~~~v~iIDvR~~~e~~~ghIpgAinip~~~~~~-------~~-~~~~~~~~~~~~iv~~c~~~~   76 (132)
T d1t3ka_           5 RSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDD-------KI-SHLVQNVKDKDTLVFHSALSQ   76 (132)
T ss_dssp             SSSEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSSEEECCSSSST-------TH-HHHHHTCCSCCEEEESSSCCS
T ss_pred             cCCCEECHHHHHHHHhCCCeEEEEccCHHHHHhccCcccceeeeecccc-------cc-cccccccccccceEEEecccc
Confidence            568899999999999 778999999999999999999999999976542       22 33333446788899999755 


Q ss_pred             chHHHHHHHHHhc-----------CcceecccHHhHHhCCCCCCCCcc
Q 041947           81 GRALRACVDLRNA-----------HVTKLEGGYSAWVDEGVAGDKPLE  117 (126)
Q Consensus        81 ~~s~~~~~~l~~~-----------~v~~l~gG~~~w~~~g~~~~~~~~  117 (126)
                      .++..++..+...           +|++|+||+.+|.++|+|+.+...
T Consensus        77 ~~~~~aa~~l~~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~pv~~~~~  124 (132)
T d1t3ka_          77 VRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRCAE  124 (132)
T ss_dssp             SSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSCCCSC
T ss_pred             ccchHHHHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHcCCCcccCCC
Confidence            4555555554431           889999999999999999997733

>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.91  E-value=1.7e-24  Score=139.45  Aligned_cols=115  Identities=15%  Similarity=0.140  Sum_probs=88.5

Q ss_pred             CCCC-CceeCHHHHHHhhhCCcEEEecC--------ChhhhcccCCCCcccccccccccc------C---CCCChHHHHH
Q 041947            1 PAGD-VASVGVDTAKDLLSSGHRFLDVR--------TTEEFNESHVHGALNVPYLFITQE------G---RVKNPEFLTQ   62 (126)
Q Consensus         1 p~~~-~~~i~~~~l~~~~~~~~~iiDvR--------~~~e~~~ghI~ga~~i~~~~~~~~------~---~~~~~~~~~~   62 (126)
                      |.++ -..|+++||.+.+++ .+|||+|        ...+|.+||||||++++++.....      +   +...+.|...
T Consensus         2 p~~p~~~lvs~~~L~~~l~d-~~iiD~r~~l~~~~~g~~~Y~~gHIPGA~~~d~~~~l~~~~~~~~~~~~lP~~~~~~~~   80 (156)
T d1okga1           2 PKHPGKVFLDPSEVADHLAE-YRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPCAEFIDW   80 (156)
T ss_dssp             CSSTTCCEECHHHHTTCGGG-SEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCTTCCCSSCCCCHHHHHHH
T ss_pred             CCCCCCcEeCHHHHHHhcCC-CEEEEeeccCCCCcchHHHHHHcCCCCCeEcCHHHhcccccCCCCCccccCCHHHHHHH
Confidence            4454 347999999998854 8999999        467899999999999998643221      1   2234678888


Q ss_pred             HHhh-cCCCCeEEEEeCCC-chHHHHHHHHHhc---CcceecccHHhHHhCCCCCCCCc
Q 041947           63 VASV-CSKEDHIIVVCNSG-GRALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKPL  116 (126)
Q Consensus        63 ~~~~-~~~~~~ivvyc~~g-~~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~~  116 (126)
                      +..+ |+++++||+||+.+ ..++..++|+++.   +|++|+||+.+|+++|+|+++.+
T Consensus        81 l~~lGI~~~~~VVvYd~~~g~~~A~R~~w~L~~~G~~v~iLdGG~~aW~~~G~pv~t~~  139 (156)
T d1okga1          81 CMANGMAGELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQACKAAGLEMESGE  139 (156)
T ss_dssp             HHHTTCSSSSCEEEECSSTTTTTHHHHHHHHHHHTCCEEEETTTTHHHHTTTCCEECSC
T ss_pred             HHhccccCCceEEEEeCCCCchHHHHHHHHHHHcCCeeEEeCCCHHHHHHCCCCCCCCC
Confidence            8887 89999999999653 3444445555555   99999999999999999998763

>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=6.9e-24  Score=134.79  Aligned_cols=108  Identities=24%  Similarity=0.450  Sum_probs=85.3

Q ss_pred             CHHHHHHhh----hCCcEEEecCChhhhc----------------ccCCCCccccccccccc-cCCCCC-hHHHHHHHhh
Q 041947            9 GVDTAKDLL----SSGHRFLDVRTTEEFN----------------ESHVHGALNVPYLFITQ-EGRVKN-PEFLTQVASV   66 (126)
Q Consensus         9 ~~~~l~~~~----~~~~~iiDvR~~~e~~----------------~ghI~ga~~i~~~~~~~-~~~~~~-~~~~~~~~~~   66 (126)
                      ..+++.+.+    .++.+|||+|++.+|.                .||||||+|+|+..+.+ .+.+.+ +++.+.+...
T Consensus         5 ~~~~v~~~~~~~~~~~~~lvD~R~~~ey~G~~~~~~~~~~~~~~r~GhIpgA~nlp~~~~~~~~~~~~~~~~~~~~~~~~   84 (141)
T d1uara2           5 YRDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAEELRALYEPL   84 (141)
T ss_dssp             CHHHHHHHHHHHHTTSEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHHGGG
T ss_pred             cHHHHHHHHHHhhCCCcEEEeCCCHHHcCCccCcccccCcccceeeeEeCCccccccccccccccccccHHHHHHHHHHh
Confidence            445665555    5788999999999985                69999999999987644 334444 5555566555


Q ss_pred             -cCCCCeEEEEeCCCchHHHHHHHHHh-c---CcceecccHHhHHh-CCCCCCCCc
Q 041947           67 -CSKEDHIIVVCNSGGRALRACVDLRN-A---HVTKLEGGYSAWVD-EGVAGDKPL  116 (126)
Q Consensus        67 -~~~~~~ivvyc~~g~~s~~~~~~l~~-~---~v~~l~gG~~~w~~-~g~~~~~~~  116 (126)
                       ++++++||+||++|.+++..+..|.. +   +|++|+|||..|.+ .++|+++..
T Consensus        85 gi~~d~~vV~yC~~G~~As~~~~~l~~~~G~~~v~~ydGs~~eW~~~~~~Pv~~g~  140 (141)
T d1uara2          85 GITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVPIAKGE  140 (141)
T ss_dssp             TCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTTCCCBCSC
T ss_pred             CCCCCCeEEEEecCcchHHHHHHHHHHHcCCCCeeEeCCcHHHHhcCCCCCcccCC
Confidence             78999999999999999887777765 3   89999999999976 799988763

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=9.2e-24  Score=134.66  Aligned_cols=107  Identities=18%  Similarity=0.354  Sum_probs=86.3

Q ss_pred             CceeCHHHHHHhh-hCCcEEEecCChhhhc------------ccCCCCccccccccccc-cCCCCCh-HHHHHHHhh-cC
Q 041947            5 VASVGVDTAKDLL-SSGHRFLDVRTTEEFN------------ESHVHGALNVPYLFITQ-EGRVKNP-EFLTQVASV-CS   68 (126)
Q Consensus         5 ~~~i~~~~l~~~~-~~~~~iiDvR~~~e~~------------~ghI~ga~~i~~~~~~~-~~~~~~~-~~~~~~~~~-~~   68 (126)
                      --.++.+++++.+ +++.+|||+|++.+|.            .||||||+|+|+..+.. .+.+... ++.+.+... ++
T Consensus        10 ~~i~~~~ev~~~l~~~~~~iiD~R~~~ef~G~~~~~~~~~~~~GhIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~gi~   89 (144)
T d1rhsa2          10 SLLKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELRAMFEAKKVD   89 (144)
T ss_dssp             GGEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCGGGGBCTTSCBCCHHHHHHHHHHTTCC
T ss_pred             HHeecHHHHHHHhcCCCcEEEECCCCHHHcCCCCCCccccceeeehhhhhhcchhhhhhhhcccCCHHHHHHHHHHcCCC
Confidence            3467899999999 7889999999999995            69999999999987543 3344444 444454444 78


Q ss_pred             CCCeEEEEeCCCchHHHHHHHHHhc---CcceecccHHhHHhCCCC
Q 041947           69 KEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDEGVA  111 (126)
Q Consensus        69 ~~~~ivvyc~~g~~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~  111 (126)
                      ++++||+||++|.+|+.++..|..+   +|.+|+|||..|...+.|
T Consensus        90 ~~~~iI~yC~sG~~A~~~~~~l~~lG~~~v~~YdGsw~eW~~~~~p  135 (144)
T d1rhsa2          90 LTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPP  135 (144)
T ss_dssp             TTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHHHHHHSCG
T ss_pred             CCCCEEEEecccchHHHHHHHHHHcCCCCCEEeCCCHHHHhhcCCC
Confidence            8999999999999999988777666   899999999999886543

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.9e-22  Score=124.64  Aligned_cols=101  Identities=30%  Similarity=0.457  Sum_probs=82.8

Q ss_pred             CceeCHHHHHHhh-hCCcEEEecCChhhhc-----------ccCCCCccccccccccccCCCCChH-HHHHHHhh-cCCC
Q 041947            5 VASVGVDTAKDLL-SSGHRFLDVRTTEEFN-----------ESHVHGALNVPYLFITQEGRVKNPE-FLTQVASV-CSKE   70 (126)
Q Consensus         5 ~~~i~~~~l~~~~-~~~~~iiDvR~~~e~~-----------~ghI~ga~~i~~~~~~~~~~~~~~~-~~~~~~~~-~~~~   70 (126)
                      -..++.+|+...+ .++.+|||+|++.+|.           .||||||+|+|+..+.......+.+ +...+... ++++
T Consensus         3 ~~~~~~~ev~~~~~~~~~~liD~R~~~~f~G~~~~~~~~~~~G~Ipga~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   82 (120)
T d1urha2           3 EAVVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSYD   82 (120)
T ss_dssp             GGBCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCGGGGBSSSSBCCHHHHHHHHHTTTCCSS
T ss_pred             hHHccHHHHHHHhhCCCcEEEeCCCHHHcCcccCCcccccccccccccchhchhhcccccccCCHHHhhhhhhhcccCcc
Confidence            3467888988888 7889999999999995           6999999999998776666555544 44444444 6889


Q ss_pred             CeEEEEeCCCchHHHHHHHHHhc---CcceecccHHhH
Q 041947           71 DHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAW  105 (126)
Q Consensus        71 ~~ivvyc~~g~~s~~~~~~l~~~---~v~~l~gG~~~w  105 (126)
                      ++||+||++|.+|..++..|..+   +|++|+|||.+|
T Consensus        83 ~~ii~yC~sG~~A~~~~~~L~~lG~~~v~~y~Gs~~eW  120 (120)
T d1urha2          83 KPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW  120 (120)
T ss_dssp             SCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC-
T ss_pred             CceEEEccchhHHHHHHHHHHHcCCCCceEcCCChhhC
Confidence            99999999999999988888777   899999999988

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.84  E-value=3e-22  Score=126.88  Aligned_cols=101  Identities=19%  Similarity=0.260  Sum_probs=76.2

Q ss_pred             HhhhCCcEEEecCChhhhc-----------ccCCCCcccccccccccc----CCC-CChHHHHHHHhh------cCCCCe
Q 041947           15 DLLSSGHRFLDVRTTEEFN-----------ESHVHGALNVPYLFITQE----GRV-KNPEFLTQVASV------CSKEDH   72 (126)
Q Consensus        15 ~~~~~~~~iiDvR~~~e~~-----------~ghI~ga~~i~~~~~~~~----~~~-~~~~~~~~~~~~------~~~~~~   72 (126)
                      +.+.++.+|||+|++.+|.           .||||||+|+|+..+...    ... ..+++...+...      +.++++
T Consensus         7 ~~~~p~~vlvD~R~~~ef~G~~~~~~~~~~~GHIpgAvnip~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   86 (139)
T d1okga2           7 DEIPPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVVQGAGDAADLSS   86 (139)
T ss_dssp             GGSCTTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSSSCEECCHHHHHHHHHTTCC-----CCCTT
T ss_pred             ccCCCCeEEEeCCCHHHhCCcCCCcccCCcCceeCCCeeccchhhccccccccccCCHHHhhhhhhhhhhhccCCCCCCe
Confidence            3446789999999999997           799999999999754322    122 233444444432      356789


Q ss_pred             EEEEeCCCchHHHHHHHHHhc---CcceecccHHhHHh-CCCCCCCC
Q 041947           73 IIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVD-EGVAGDKP  115 (126)
Q Consensus        73 ivvyc~~g~~s~~~~~~l~~~---~v~~l~gG~~~w~~-~g~~~~~~  115 (126)
                      ||+||++|.+|+.++..|..+   +|++|+|||..|.+ .++|+++.
T Consensus        87 vV~yC~sG~~Aa~~~~~L~~~G~~~v~vydGsw~eW~~~~~~Pv~~~  133 (139)
T d1okga2          87 FVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIMRS  133 (139)
T ss_dssp             SEEECSSSSTHHHHHHHHHHTTSCCCEECSSHHHHHHHHTHHHHHHH
T ss_pred             EEEECCCcHHHHHHHHHHHHhCCCCccCCCCCHHHHhCCCCCCeeec
Confidence            999999999999877777666   89999999999965 67887654

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8.5e-21  Score=122.82  Aligned_cols=101  Identities=21%  Similarity=0.316  Sum_probs=76.4

Q ss_pred             CCCceeCHHHHHHhhh-------CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh-----cCCC
Q 041947            3 GDVASVGVDTAKDLLS-------SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV-----CSKE   70 (126)
Q Consensus         3 ~~~~~i~~~~l~~~~~-------~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~   70 (126)
                      ..++.|+++++.++++       ++++|||+|+..||..|||+||+|+|...          .+...+...     ..+.
T Consensus        20 ~~~k~Is~~~l~~ll~~~~~~~~~~~~IIDvR~~~Ey~~gHI~gAinip~~~----------~~~~~l~~~~~~~~~~~~   89 (161)
T d1c25a_          20 QDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEE----------EVEDFLLKKPIVPTDGKR   89 (161)
T ss_dssp             TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHH----------HHHHHTTTSCCCCCTTSE
T ss_pred             CCCCccCHHHHHHHHhhhhhcccCCEEEEECCCHHHHHhhhcCCcEEcCcHH----------HHHHHHhhhhhhhhhccC
Confidence            3678899999999983       36899999999999999999999999742          122222222     1233


Q ss_pred             CeEEEEeC-CCchHHHHHHHHHhc-------------CcceecccHHhHHhCCCCCC
Q 041947           71 DHIIVVCN-SGGRALRACVDLRNA-------------HVTKLEGGYSAWVDEGVAGD  113 (126)
Q Consensus        71 ~~ivvyc~-~g~~s~~~~~~l~~~-------------~v~~l~gG~~~w~~~g~~~~  113 (126)
                      ..||+||. ++.++..++..+...             +|++|.||+.+|.+..-++.
T Consensus        90 ~~vV~yc~~s~~rs~~~a~~l~~~~~~~~~~~~~g~~~V~vL~GG~~~w~~~~p~lc  146 (161)
T d1c25a_          90 VIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMKCQSYC  146 (161)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHHHGGGE
T ss_pred             CeEEEEeccccccHHHHHHHHHHHHHhhccccccCCCeEEEECCcHHHHHHHCcCcc
Confidence            45888996 778888888887642             79999999999988754443

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8.2e-20  Score=114.57  Aligned_cols=101  Identities=14%  Similarity=0.155  Sum_probs=71.4

Q ss_pred             eeCHHHHHHhh---hCCcEEEecCChhhhcccCCCCccccccccccccCCC------CChHHHHHHHhhcCCCCeEEEEe
Q 041947            7 SVGVDTAKDLL---SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRV------KNPEFLTQVASVCSKEDHIIVVC   77 (126)
Q Consensus         7 ~i~~~~l~~~~---~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ivvyc   77 (126)
                      .|+++||.+++   +.+.+|||+|++.+|..+|||||+|||...+......      ....... ........+.||+||
T Consensus         2 ~Is~~eL~~~l~~~~~~~liiDvR~~~ey~~~hI~gAinip~~~l~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~iV~yd   80 (135)
T d2gwfa1           2 AITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKD-TWKKRGNVEYVVLLD   80 (135)
T ss_dssp             EECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCEECCGGGCCTTCCHHHHHHTSCHHHHH-HHHTTTTSSEEEEEC
T ss_pred             eECHHHHHHHHhcCCCCEEEEEecCCccccCCccCCeEEeCHHHcccccchhhhhhhhhHHHHH-HHhccCCCCeEEEEe
Confidence            69999999999   3569999999999999999999999999876543211      1111222 222235778899999


Q ss_pred             CCCchH----HHHH----HHHHhc--------CcceecccHHhHHhC
Q 041947           78 NSGGRA----LRAC----VDLRNA--------HVTKLEGGYSAWVDE  108 (126)
Q Consensus        78 ~~g~~s----~~~~----~~l~~~--------~v~~l~gG~~~w~~~  108 (126)
                      ..+...    ....    ..|...        +|++|+||+.+|.+.
T Consensus        81 ~~s~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~iL~GG~~~w~~~  127 (135)
T d2gwfa1          81 WFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC  127 (135)
T ss_dssp             SSCCGGGCCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH
T ss_pred             CCCCcccHHHHHHHHHHHHHHhcccccccCCCcEEEEechHHHHHHh
Confidence            875422    2222    223221        799999999999987

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.3e-19  Score=114.21  Aligned_cols=102  Identities=22%  Similarity=0.227  Sum_probs=71.3

Q ss_pred             ceeCHHHHHHhh---hCCcEEEecCChhhhcccCCCCccccccccccc----------cCCCCChHHHHHHHhhcCCCCe
Q 041947            6 ASVGVDTAKDLL---SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQ----------EGRVKNPEFLTQVASVCSKEDH   72 (126)
Q Consensus         6 ~~i~~~~l~~~~---~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~   72 (126)
                      ..+|+++|.+.+   +++.+|||+|++.+|..||||||+|+++..+..          ...+........+... ...+.
T Consensus        16 ~~~s~e~L~~~l~~~~~~~lilDvR~~~ey~~~HI~gAini~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   94 (154)
T d1hzma_          16 ISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALFTRGEDRDRFTRR-CGTDT   94 (154)
T ss_dssp             SBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHTBCCSCCCTTTTSTTSHHHHHHHHS-TTSSC
T ss_pred             CccCHHHHHHHHhcCCCCEEEEECCCHHHHhcCCCCCCcccCcHHHHhhhccCCcccccccCCcHHHHHHHhhc-CCCCe
Confidence            358899999998   567999999999999999999999999764321          1123333333333333 56788


Q ss_pred             EEEEeCCCc------hHHHHHHHH----Hhc--CcceecccHHhHHhC
Q 041947           73 IIVVCNSGG------RALRACVDL----RNA--HVTKLEGGYSAWVDE  108 (126)
Q Consensus        73 ivvyc~~g~------~s~~~~~~l----~~~--~v~~l~gG~~~w~~~  108 (126)
                      ||+||.++.      +......++    ...  +|++|+||+.+|.+.
T Consensus        95 VVvYd~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~iL~GG~~~w~~~  142 (154)
T d1hzma_          95 VVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLEGGFSKFQAE  142 (154)
T ss_dssp             EEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTCCCEECCCCHHHHHHH
T ss_pred             EEEEcCCCchhhhhHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHH
Confidence            999997643      112222232    222  899999999999875

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6.3e-19  Score=115.20  Aligned_cols=95  Identities=25%  Similarity=0.396  Sum_probs=72.8

Q ss_pred             CCCceeCHHHHHHhhh-------CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHH--hh-----cC
Q 041947            3 GDVASVGVDTAKDLLS-------SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVA--SV-----CS   68 (126)
Q Consensus         3 ~~~~~i~~~~l~~~~~-------~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~--~~-----~~   68 (126)
                      +.+..|++++|.++++       ++++|||+|++.||..|||+||+|+|...+.           ....  ..     .+
T Consensus        20 ~~~k~Isp~eL~~ll~~~~~~~~~~~lIID~R~~~Ey~~gHI~gAiNi~~~~~~-----------~~~~~~~~~~~~~~~   88 (174)
T d1ymka1          20 QDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDA-----------ESFLLKSPIAPCSLD   88 (174)
T ss_dssp             TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHH-----------HHHHHTTTCCC----
T ss_pred             CCCcEeCHHHHHHHHhhhhhcccCCEEEEECCCchhhhhhhcCCccccCchHHH-----------HHHHHHhhhhhhhhc
Confidence            4677899999999993       3589999999999999999999999986332           1111  11     13


Q ss_pred             CCCeEEEEeC-CCchHHHHHHHHHhc-------------CcceecccHHhHHhC
Q 041947           69 KEDHIIVVCN-SGGRALRACVDLRNA-------------HVTKLEGGYSAWVDE  108 (126)
Q Consensus        69 ~~~~ivvyc~-~g~~s~~~~~~l~~~-------------~v~~l~gG~~~w~~~  108 (126)
                      ..+.||+||. ++.++..++..+...             +|++|.||+.+|.+.
T Consensus        89 ~~~~vV~yc~~s~~r~~~~a~~l~~~~~~~~~~~~~g~~~VyiL~GGf~~f~~~  142 (174)
T d1ymka1          89 KRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQ  142 (174)
T ss_dssp             CEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTT
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHHHHhhhccccCCceEEEecCcHHHHHHh
Confidence            4456999997 466787877777632             799999999999775

>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Putative phosphatase At1g05000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.98  E-value=0.041  Score=33.14  Aligned_cols=86  Identities=10%  Similarity=-0.064  Sum_probs=46.6

Q ss_pred             eCHHHHHHhh-hCCcEEEecCChhhhcc------cCCCCccccccccccccCCCCChHHHHHHHhh-cC-CCCeEEEEeC
Q 041947            8 VGVDTAKDLL-SSGHRFLDVRTTEEFNE------SHVHGALNVPYLFITQEGRVKNPEFLTQVASV-CS-KEDHIIVVCN   78 (126)
Q Consensus         8 i~~~~l~~~~-~~~~~iiDvR~~~e~~~------ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~ivvyc~   78 (126)
                      .+++++..+. -+=-.|||+|+..+...      .+=-.-+++|.............+....+... .+ .+.+++++|.
T Consensus        21 ~t~~~~~~L~~lgIktIidLr~~~e~~~~~~~~~~~gi~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlvHC~  100 (151)
T d1xria_          21 PDSANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGIRLFQFGIEGNKEPFVNIPDHKIRMALKVLLDEKNHPVLIHCK  100 (151)
T ss_dssp             CCHHHHHHHHHHTCSEEEECCSSCCCHHHHHHHHHHTCEEEECCCCCCCGGGCCCCHHHHHHHHHHHHCGGGCSEEEECS
T ss_pred             CCHHHHHHHHHCCCCEEEECCCcchhhcccchhhhcCceEeecCccccccccccccHHHHHHHHHHHhcCCCCCEEEEcC
Confidence            4566665444 34459999998665321      11001234444322222222233334433333 33 5678999998


Q ss_pred             CC-chHHHHHHHHHhc
Q 041947           79 SG-GRALRACVDLRNA   93 (126)
Q Consensus        79 ~g-~~s~~~~~~l~~~   93 (126)
                      .| +|+..++..++..
T Consensus       101 ~GkdRTG~v~a~~l~~  116 (151)
T d1xria_         101 RGKHRTGCLVGCLRKL  116 (151)
T ss_dssp             SSSSHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHH
Confidence            87 6887777777765

>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Kinase associated phosphatase (kap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.13  E-value=0.4  Score=29.36  Aligned_cols=79  Identities=14%  Similarity=0.154  Sum_probs=41.9

Q ss_pred             HHHHHhh-hCCcEEEecCChhhhcccCCCCc-----------cccccccccccCCCCCh---HHHHHHHhhcCCCCeEEE
Q 041947           11 DTAKDLL-SSGHRFLDVRTTEEFNESHVHGA-----------LNVPYLFITQEGRVKNP---EFLTQVASVCSKEDHIIV   75 (126)
Q Consensus        11 ~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga-----------~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ivv   75 (126)
                      +++..+. .+-..||.+-+..|+..-.++.-           .++|+..   .+....+   ++...+...+..+++|+|
T Consensus        38 ~dl~~L~~~gi~~Vv~L~~~~E~~~~~~~~~~~~~~~~gi~~~~~p~~D---~~~p~~~~~~~~~~~i~~~l~~~~~V~V  114 (176)
T d1fpza_          38 KDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIAD---GGTPDIASCCEIMEELTTCLKNYRKTLI  114 (176)
T ss_dssp             HHHHHHHHHTCCEEEECCCHHHHHHTTCTTHHHHHHHTTCEEEECCCCT---TCCCCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHhCCCCEEEEeCChhhhhhcCCCcHHHHHHHcCCEEEeCCccC---CCchhhHHHHHHHHHHHHHHHcCCeEEE
Confidence            4444444 34457888888777655444431           2333321   1111122   333344444567888999


Q ss_pred             EeCCC-chHHHHH-HHHHh
Q 041947           76 VCNSG-GRALRAC-VDLRN   92 (126)
Q Consensus        76 yc~~g-~~s~~~~-~~l~~   92 (126)
                      +|..| +|+...+ .+|..
T Consensus       115 HC~~G~gRtg~v~~~~Li~  133 (176)
T d1fpza_         115 HSYGGLGRSCLVAACLLLY  133 (176)
T ss_dssp             ECSSSSSHHHHHHHHHHHH
T ss_pred             EecCCCCchHHHHHHHHHH
Confidence            99877 5655543 44443

>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Mycobacterial PtpB-like
domain: Phosphotyrosine protein phosphatase PtpB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.53  E-value=0.66  Score=30.36  Aligned_cols=26  Identities=15%  Similarity=0.199  Sum_probs=19.9

Q ss_pred             CCCCeEEEEeCCC-chHHHHHHHHHhc
Q 041947           68 SKEDHIIVVCNSG-GRALRACVDLRNA   93 (126)
Q Consensus        68 ~~~~~ivvyc~~g-~~s~~~~~~l~~~   93 (126)
                      ..+.+++++|..| +|...++..++..
T Consensus       148 ~~~~pvL~HCtaGKDRTG~~aallL~l  174 (272)
T d1ywfa1         148 AAGRPVLTHCFAGKDRTGFVVALVLEA  174 (272)
T ss_dssp             HTTCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             ccCCCEEEecCCCCcchHHHHHHHHHH
Confidence            3578999999866 7777777777766

>d1jl3a_ c.44.1.1 (A:) Arsenate reductase ArsC {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Phosphotyrosine protein phosphatases I-like
superfamily: Phosphotyrosine protein phosphatases I
family: Low-molecular-weight phosphotyrosine protein phosphatases
domain: Arsenate reductase ArsC
species: Bacillus subtilis [TaxId: 1423]

Probab=87.40  E-value=0.15  Score=29.89  Aligned_cols=34  Identities=15%  Similarity=0.116  Sum_probs=25.1

Q ss_pred             CCeEEEEeCCC-chHHHHHHHHHhc---CcceecccHH
Q 041947           70 EDHIIVVCNSG-GRALRACVDLRNA---HVTKLEGGYS  103 (126)
Q Consensus        70 ~~~ivvyc~~g-~~s~~~~~~l~~~---~v~~l~gG~~  103 (126)
                      +|+|+++|.+. .||..+..+++.+   ++.+..+|+.
T Consensus         1 ~K~ILFVC~gN~cRSpmAEai~~~~~~~~~~~~Sag~~   38 (137)
T d1jl3a_           1 NKIIYFLCTGNSCRSQMAEGWAKQYLGDEWKVYSAGIE   38 (137)
T ss_dssp             CEEEEEEESSSSSHHHHHHHHHHHHSCTTEEEEEEESS
T ss_pred             CCEEEEEeCCChhHHHHHHHHHHHhCCCCeeecccccc
Confidence            36799999865 5777777777666   6778888864

>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Mapk phosphatase
species: Human (Homo sapiens), pac-1 [TaxId: 9606]

Probab=86.60  E-value=1.9  Score=25.13  Aligned_cols=93  Identities=14%  Similarity=0.077  Sum_probs=44.5

Q ss_pred             cEEEecCChhhhcccCCCCccccccccccccCCCC-ChHHHHHHHhhcCCCCeEEEEeCCC-chHH-HHHHHHHhc-Ccc
Q 041947           21 HRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVK-NPEFLTQVASVCSKEDHIIVVCNSG-GRAL-RACVDLRNA-HVT   96 (126)
Q Consensus        21 ~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivvyc~~g-~~s~-~~~~~l~~~-~v~   96 (126)
                      ..||++.........+...=.++|+.......... -.+....+...+..+++|+|+|..| +||. .++.+|... +..
T Consensus        31 ~~Iin~~~~~~~~~~~~~~y~~i~i~D~~~~~i~~~~~~~~~~i~~~~~~~~~VlVHC~~G~sRS~~v~~aYLm~~~~~~  110 (145)
T d1m3ga_          31 TAVLNVSASCPNHFEGLFRYKSIPVEDNQMVEISAWFQEAIGFIDWVKNSGGRVLVHSQAGISRSATICLAYLMQSRRVR  110 (145)
T ss_dssp             SEEEECSSSSSEEECSSSEEEECCCCCSTTCCCTTSHHHHHHHHHHHHHTTCCEEECCSSSSSHHHHHHHHHHHHTTCCH
T ss_pred             cEEEEecCCCCcCCCCceEEEEEeccCCchhhHHHHHHHHHHHHHHhhccCceEEEEcccccccHHHHHHHHHHHHhCCC
Confidence            36888875432221111122355554322221111 1334445545456788999999877 5664 444445544 433


Q ss_pred             eecccHHhHHhCCCCCCCC
Q 041947           97 KLEGGYSAWVDEGVAGDKP  115 (126)
Q Consensus        97 ~l~gG~~~w~~~g~~~~~~  115 (126)
                       +... -+..+...|...+
T Consensus       111 -~~~A-~~~v~~~Rp~v~p  127 (145)
T d1m3ga_         111 -LDEA-FDFVKQRRGVISP  127 (145)
T ss_dssp             -HHHH-HHHHSCSCCCCSS
T ss_pred             -HHHH-HHHHHHHCCCCCC
Confidence             2222 2234455565544

>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]

Probab=86.24  E-value=0.34  Score=29.95  Aligned_cols=46  Identities=9%  Similarity=0.060  Sum_probs=36.8

Q ss_pred             HHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc--CcceecccHH
Q 041947           58 EFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGYS  103 (126)
Q Consensus        58 ~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~--~v~~l~gG~~  103 (126)
                      ++...+...+..++.++|||.+-..+...+..|.+.  ++..+.|++.
T Consensus        19 dll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~   66 (174)
T d1c4oa2          19 DLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELD   66 (174)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCC
T ss_pred             HHHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccc
Confidence            455555555567889999999988899999999988  7779999874

>d1ohea2 c.45.1.1 (A:199-380) Proline directed phosphatase CDC14b2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Proline directed phosphatase CDC14b2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.16  E-value=0.91  Score=27.91  Aligned_cols=35  Identities=14%  Similarity=0.011  Sum_probs=22.0

Q ss_pred             HHHHHHhhcCCCCeEEEEeCCCc-hHH-HHHHHHHhc
Q 041947           59 FLTQVASVCSKEDHIIVVCNSGG-RAL-RACVDLRNA   93 (126)
Q Consensus        59 ~~~~~~~~~~~~~~ivvyc~~g~-~s~-~~~~~l~~~   93 (126)
                      +...+....+.+.+|+|+|..|. |+. .++.+|...
T Consensus        98 i~~~i~~~~~~~~~V~VHC~~G~gRsgt~~a~yL~~~  134 (182)
T d1ohea2          98 VKEFLDICENAEGAIAVHSKAGLGRTGTLIACYIMKH  134 (182)
T ss_dssp             HHHHHHHHHSCSSEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcEEEEeCCCCcchHHHHHHHHHHH
Confidence            33444444467889999999884 665 444555443