Citrus Sinensis ID: 041953

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
ATANTSTITTDRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKFGTVI
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEEEccccccEEEEEccccccEEEccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHccccccccEEEccccccEEEcccHHHcccccccEEEccccEEEEcccccccccccccEEEcccccccccccHHHHcccccccEEccccccEEccccccccccccccccccccccEEcccccccccccccEEEcccccccccccHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHccccccccHHccccccccccccEEEEEccccccEEEEEEccccEEccccHHHHHcccccEEEEEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccHHHHHHHHHcc
Coil and Loop (DISEMBL)
atantstiTTDRDALLALKAHithdptnffaknwntstpvcnwtgvtcdvhshrVTVLNIsrlnltgtipsqlgnlsslQSLNLScnrlsgsipsaifTTYTLKYVSFRKnqlsgafpsfafntsslqyldfgfntlsgeipanicsnlpFLEYLALSQNmfhggipsalsnCAYLQrlglssndfsgvvpkeicnltklkglylggnrlqgeipresgnlAELELMSLSEnelqgaiprewgnltglgilqlsdnfltgitpSSIYKLLFSIKFGTVI
Flexible Loop (DISEMBL)
atantstittdrDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKllfsikfgtvi
Low Complexity Region (SEG)
ATANTSTITTDRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPsqlgnlsslqslnlscnrlsGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGnlaelelmslsenelQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKFGTVI
Disordered region (IsUnstruct)
***********RDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEI******************ELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKFGT**
Disordered Region (DISOPRED)
*****STITTDRDALLALKAHITHDPTNFFA*NWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKFGTVI
Disordered Region (DISEMBL)
********TTDRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKFGTVI
Disordered Region (DISPRO)
********TTDRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKFGTVI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ATANTSTITTDRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKFGTVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	279	2.2.26 [Sep-21-2011]
Q9M2Z1	1002	Leucine-rich repeat recep	yes	no	0.928	0.258	0.370	6e-40
Q9FL28	1173	LRR receptor-like serine/	no	no	0.913	0.217	0.358	9e-38
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.888	0.218	0.396	9e-36
O49545	1003	Leucine-rich repeat recep	no	no	0.913	0.254	0.355	2e-34
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.935	0.237	0.359	3e-34
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.881	0.242	0.372	3e-34
C0LGT6	1031	LRR receptor-like serine/	no	no	0.928	0.251	0.326	3e-34
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.949	0.259	0.325	5e-34
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.960	0.243	0.345	7e-34
Q6XAT2	967	LRR receptor-like serine/	no	no	0.974	0.281	0.347	1e-33

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score =  164 bits (415), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 106/286 (37%), Positives = 157/286 (54%), Gaps = 27/286 (9%)

Query: 10  TDRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTI 69
           T+  ALL+LK+  T D  +    +WN ST  C+WTGVTCDV    VT L++S LNL+GT+
Sbjct: 26  TELHALLSLKSSFTIDEHSPLLTSWNLSTTFCSWTGVTCDVSLRHVTSLDLSGLNLSGTL 85

Query: 70  PSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFP-SFAFNTSSLQ 128
            S + +L  LQ+L+L+ N++SG IP  I   Y L++++   N  +G+FP   +    +L+
Sbjct: 86  SSDVAHLPLLQNLSLAANQISGPIPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLR 145

Query: 129 YLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSG 188
            LD   N L+G++P ++ +NL  L +L L  N F G IP+       L+ L +S N+ +G
Sbjct: 146 VLDLYNNNLTGDLPVSL-TNLTQLRHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNELTG 204

Query: 189 VVPKEICNLTKLKGLYLG-------------GN------------RLQGEIPRESGNLAE 223
            +P EI NLT L+ LY+G             GN             L GEIP E G L +
Sbjct: 205 KIPPEIGNLTTLRELYIGYYNAFENGLPPEIGNLSELVRFDAANCGLTGEIPPEIGKLQK 264

Query: 224 LELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
           L+ + L  N   G I +E G ++ L  + LS+N  TG  P+S  +L
Sbjct: 265 LDTLFLQVNAFTGTITQELGLISSLKSMDLSNNMFTGEIPTSFSQL 310

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  157 bits (397), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 101/282 (35%), Positives = 146/282 (51%), Gaps = 27/282 (9%)

Query: 13  DALLALKAHITHDPTNFFAKNWNT--STPVCNWTGVTCDVHSHRVTV------------- 57
           +AL + K  I++DP    + +W    S   CNWTG+TCD   H V+V             
Sbjct: 32  EALKSFKNGISNDPLGVLS-DWTIIGSLRHCNWTGITCDSTGHVVSVSLLEKQLEGVLSP 90

Query: 58  ----------LNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVS 107
                     L+++  + TG IP+++G L+ L  L L  N  SGSIPS I+    + Y+ 
Sbjct: 91  AIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLD 150

Query: 108 FRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIP 167
            R N LSG  P     TSSL  + F +N L+G+IP  +  +L  L+    + N   G IP
Sbjct: 151 LRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECL-GDLVHLQMFVAAGNHLTGSIP 209

Query: 168 SALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELM 227
            ++   A L  L LS N  +G +P++  NL  L+ L L  N L+G+IP E GN + L  +
Sbjct: 210 VSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQL 269

Query: 228 SLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
            L +N+L G IP E GNL  L  L++  N LT   PSS+++L
Sbjct: 270 ELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRL 311

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  150 bits (380), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 102/257 (39%), Positives = 144/257 (56%), Gaps = 9/257 (3%)

Query: 13  DALLALKAHITHDPTNFFAKNWNTSTPV--CNWTGVTCDVHSHRVTVLNISRLNLTGTIP 70
           DAL A K ++ HDP      +W+ STP   C+W GV C   +HRVT + + RL L+G I 
Sbjct: 30  DALTAFKLNL-HDPLGALT-SWDPSTPAAPCDWRGVGCT--NHRVTEIRLPRLQLSGRIS 85

Query: 71  SQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYL 130
            ++  L  L+ L+L  N  +G+IP+++     L  V  + N LSG  P    N +SL+  
Sbjct: 86  DRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLEVF 145

Query: 131 DFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVV 190
           +   N LSGEIP  + S+L FL+   +S N F G IPS L+N   LQ L LS N  +G +
Sbjct: 146 NVAGNRLSGEIPVGLPSSLQFLD---ISSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEI 202

Query: 191 PKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGI 250
           P  + NL  L+ L+L  N LQG +P    N + L  +S SENE+ G IP  +G L  L +
Sbjct: 203 PASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVIPAAYGALPKLEV 262

Query: 251 LQLSDNFLTGITPSSIY 267
           L LS+N  +G  P S++
Sbjct: 263 LSLSNNNFSGTVPFSLF 279

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/284 (35%), Positives = 149/284 (52%), Gaps = 29/284 (10%)

Query: 14  ALLALKAHITH--DPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPS 71
           ALL+LK  +T   D  N    +W  ST  C W GVTCDV    VT L++S LNL+GT+  
Sbjct: 28  ALLSLKTSLTGAGDDKNSPLSSWKVSTSFCTWIGVTCDVSRRHVTSLDLSGLNLSGTLSP 87

Query: 72  QLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPS-FAFNTSSLQYL 130
            + +L  LQ+L+L+ N +SG IP  I +   L++++   N  +G+FP   +    +L+ L
Sbjct: 88  DVSHLRLLQNLSLAENLISGPIPPEISSLSGLRHLNLSNNVFNGSFPDEISSGLVNLRVL 147

Query: 131 DFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVV 190
           D   N L+G++P ++ +NL  L +L L  N F G IP +  +   ++ L +S N+  G +
Sbjct: 148 DVYNNNLTGDLPVSV-TNLTQLRHLHLGGNYFAGKIPPSYGSWPVIEYLAVSGNELVGKI 206

Query: 191 PKEICNLTKLKGLYLG-------------GN------------RLQGEIPRESGNLAELE 225
           P EI NLT L+ LY+G             GN             L GEIP E G L +L+
Sbjct: 207 PPEIGNLTTLRELYIGYYNAFEDGLPPEIGNLSELVRFDGANCGLTGEIPPEIGKLQKLD 266

Query: 226 LMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
            + L  N   G +  E G L+ L  + LS+N  TG  P+S  +L
Sbjct: 267 TLFLQVNVFSGPLTWELGTLSSLKSMDLSNNMFTGEIPASFAEL 310

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  145 bits (367), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/292 (35%), Positives = 146/292 (50%), Gaps = 31/292 (10%)

Query: 5   TSTITTDRDALLALKAHITHDPTNFFAKNWNT--STPVCNWTGVTCDVHSHRVTVLNISR 62
             ++  +   LL  KA +  + +N +  +WN   S P CNWTG+ C  H   VT ++++ 
Sbjct: 21  VRSLNEEGRVLLEFKAFL--NDSNGYLASWNQLDSNP-CNWTGIAC-THLRTVTSVDLNG 76

Query: 63  LNLTGT------------------------IPSQLGNLSSLQSLNLSCNRLSGSIPSAIF 98
           +NL+GT                        IP  L    SL+ L+L  NR  G IP  + 
Sbjct: 77  MNLSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQLT 136

Query: 99  TTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS 158
              TLK +   +N L G+ P    N SSLQ L    N L+G IP ++ + L  L  +   
Sbjct: 137 MIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSM-AKLRQLRIIRAG 195

Query: 159 QNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES 218
           +N F G IPS +S C  L+ LGL+ N   G +PK++  L  L  L L  NRL GEIP   
Sbjct: 196 RNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSV 255

Query: 219 GNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL 270
           GN++ LE+++L EN   G+IPRE G LT +  L L  N LTG  P  I  L+
Sbjct: 256 GNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLI 307

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score =  145 bits (366), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/279 (37%), Positives = 142/279 (50%), Gaps = 33/279 (11%)

Query: 14  ALLALKAHITHDPTNFFAKNWNTS--TPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPS 71
            LL++K+ +  DP NF  K+W  S  +  CNWTGV C+ + + V  L+++ +NLTG I  
Sbjct: 33  VLLSVKSTLV-DPLNFL-KDWKLSDTSDHCNWTGVRCNSNGN-VEKLDLAGMNLTGKISD 89

Query: 72  QLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD 131
            +  LSSL S N+SCN     +P +I     LK +   +N  SG+   F+  +  L +L+
Sbjct: 90  SISQLSSLVSFNISCNGFESLLPKSI---PPLKSIDISQNSFSGSLFLFSNESLGLVHLN 146

Query: 132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSN------- 184
              N LSG +  ++  NL  LE L L  N F G +PS+  N   L+ LGLS N       
Sbjct: 147 ASGNNLSGNLTEDL-GNLVSLEVLDLRGNFFQGSLPSSFKNLQKLRFLGLSGNNLTGELP 205

Query: 185 -----------------DFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELM 227
                            +F G +P E  N+  LK L L   +L GEIP E G L  LE +
Sbjct: 206 SVLGQLPSLETAILGYNEFKGPIPPEFGNINSLKYLDLAIGKLSGEIPSELGKLKSLETL 265

Query: 228 SLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSI 266
            L EN   G IPRE G++T L +L  SDN LTG  P  I
Sbjct: 266 LLYENNFTGTIPREIGSITTLKVLDFSDNALTGEIPMEI 304

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  145 bits (366), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 135/285 (47%), Gaps = 26/285 (9%)

Query: 10  TDRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTI 69
           TD  ALL  K+ ++ +       +WN S+P CNW GVTC     RV  LN+    LTG I
Sbjct: 30  TDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGVI 89

Query: 70  PSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQY 129
              +GNLS L+ LNL+ N    +IP  +   + L+Y++   N L G  PS   N S L  
Sbjct: 90  SPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLST 149

Query: 130 LDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGV 189
           +D   N L   +P+ + S L  L  L LS+N   G  P++L N   LQ+L  + N   G 
Sbjct: 150 VDLSSNHLGHGVPSELGS-LSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGE 208

Query: 190 VPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSE------------------ 231
           +P E+  LT++    +  N   G  P    N++ LE +SL++                  
Sbjct: 209 IPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPNL 268

Query: 232 -------NELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
                  N+  GAIP+   N++ L    +S N+L+G  P S  KL
Sbjct: 269 RRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKL 313

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score =  144 bits (364), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 91/280 (32%), Positives = 141/280 (50%), Gaps = 15/280 (5%)

Query: 1   ATANTSTITTDRDALLALKAHITHDPTNFFAKNWNTSTP----VCNWTGVTC-------- 48
              N+  +T + + L AL+  +    ++     WN S+      C+W G++C        
Sbjct: 20  VVVNSQNLTCNSNDLKALEGFMRGLESSIDGWKWNESSSFSSNCCDWVGISCKSSVSLGL 79

Query: 49  -DV-HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYV 106
            DV  S RV  L + R  L+G +   +  L  L+ LNL+ N LSGSI +++     L+ +
Sbjct: 80  DDVNESGRVVELELGRRKLSGKLSESVAKLDQLKVLNLTHNSLSGSIAASLLNLSNLEVL 139

Query: 107 SFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGI 166
               N  SG FPS   N  SL+ L+   N+  G IPA++C+NLP +  + L+ N F G I
Sbjct: 140 DLSSNDFSGLFPSL-INLPSLRVLNVYENSFHGLIPASLCNNLPRIREIDLAMNYFDGSI 198

Query: 167 PSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELEL 226
           P  + NC+ ++ LGL+SN+ SG +P+E+  L+ L  L L  NRL G +  + G L+ L  
Sbjct: 199 PVGIGNCSSVEYLGLASNNLSGSIPQELFQLSNLSVLALQNNRLSGALSSKLGKLSNLGR 258

Query: 227 MSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSI 266
           + +S N+  G IP  +  L  L       N   G  P S+
Sbjct: 259 LDISSNKFSGKIPDVFLELNKLWYFSAQSNLFNGEMPRSL 298

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  144 bits (363), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 103/298 (34%), Positives = 144/298 (48%), Gaps = 30/298 (10%)

Query: 5   TSTITTDRDALLALKAHITHDPTNFFAKNWNTSTPV-CNWTGVTCDVHSH--RVTVLNIS 61
           T+ +  +   LL +K+       N   +NWN++  V C WTGV C  +S    V  LN+S
Sbjct: 24  TTGLNLEGQYLLEIKSKFVDAKQNL--RNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLS 81

Query: 62  RL------------------------NLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAI 97
            +                         L+G IP ++GN SSL+ L L+ N+  G IP  I
Sbjct: 82  SMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEI 141

Query: 98  FTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLAL 157
               +L+ +    N++SG+ P    N  SL  L    N +SG++P +I  NL  L     
Sbjct: 142 GKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSI-GNLKRLTSFRA 200

Query: 158 SQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRE 217
            QNM  G +PS +  C  L  LGL+ N  SG +PKEI  L KL  + L  N   G IPRE
Sbjct: 201 GQNMISGSLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPRE 260

Query: 218 SGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKF 275
             N   LE ++L +N+L G IP+E G+L  L  L L  N L G  P  I  L ++I+ 
Sbjct: 261 ISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEI 318

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/296 (34%), Positives = 143/296 (48%), Gaps = 24/296 (8%)

Query: 3   ANTSTITTDRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISR 62
            + S +  +  AL+A+KA  ++        +   +   C+W GV CD  S  V  LN+S 
Sbjct: 23  GSVSPMNNEGKALMAIKASFSNVANMLLDWDDVHNHDFCSWRGVFCDNVSLNVVSLNLSN 82

Query: 63  LNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAF 122
           LNL G I S LG+L +LQS++L  N+L G IP  I    +L YV F  N L G  P    
Sbjct: 83  LNLGGEISSALGDLMNLQSIDLQGNKLGGQIPDEIGNCVSLAYVDFSTNLLFGDIPFSIS 142

Query: 123 NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLS 182
               L++L+   N L+G IPA + + +P L+ L L++N   G IP  L     LQ LGL 
Sbjct: 143 KLKQLEFLNLKNNQLTGPIPATL-TQIPNLKTLDLARNQLTGEIPRLLYWNEVLQYLGLR 201

Query: 183 SNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREW 242
            N  +G +  ++C LT L    + GN L G IP   GN    E++ +S N++ G IP   
Sbjct: 202 GNMLTGTLSPDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFEILDVSYNQITGVIPYNI 261

Query: 243 G------------NLTG-----------LGILQLSDNFLTGITPSSIYKLLFSIKF 275
           G             LTG           L +L LSDN LTG  P  +  L F+ K 
Sbjct: 262 GFLQVATLSLQGNKLTGRIPEVIGLMQALAVLDLSDNELTGPIPPILGNLSFTGKL 317

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
359485176	1160	PREDICTED: probable LRR receptor-like se	0.928	0.223	0.440	2e-49
255578886	1043	serine-threonine protein kinase, plant-t	0.935	0.250	0.418	7e-49
224139658	1019	predicted protein [Populus trichocarpa]	0.910	0.249	0.425	6e-48
356510768	1214	PREDICTED: probable LRR receptor-like se	0.964	0.221	0.396	9e-47
359485449	1583	PREDICTED: LRR receptor-like serine/thre	0.960	0.169	0.429	2e-45
296086336	628	unnamed protein product [Vitis vinifera]	0.913	0.406	0.395	2e-44
297740829	1892	unnamed protein product [Vitis vinifera]	0.892	0.131	0.432	4e-44
255583729	383	serine-threonine protein kinase, plant-t	0.917	0.668	0.357	8e-44
298204751	1979	unnamed protein product [Vitis vinifera]	0.928	0.130	0.411	2e-43
255583725	973	serine-threonine protein kinase, plant-t	0.910	0.261	0.411	4e-43

>gi|359485176|ref|XP_002280075.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 115/261 (44%), Positives = 158/261 (60%), Gaps = 2/261 (0%)

Query: 10  TDRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTI 69
            D  +LLA+KAHIT D  +  A NW+T+T  CNW GV+CD    RV  L++S ++L GTI
Sbjct: 33  ADELSLLAMKAHITSDSKDVLATNWSTTTSYCNWFGVSCDAARQRVIALDLSNMDLEGTI 92

Query: 70  PSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQY 129
             Q+GNLS L +L+LS N    SIP+ I     L+ +    N+L+G+ P    N S L+ 
Sbjct: 93  APQVGNLSFLVTLDLSNNSFHASIPNEIAKCRELRQLYLFNNRLTGSIPQAIGNLSKLEQ 152

Query: 130 LDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGV 189
           L  G N L+GEIP  I S+L  L+ L+   N     IPSA+ N + LQ +GL+ N  SG 
Sbjct: 153 LYLGGNQLTGEIPREI-SHLLSLKILSFRSNNLTASIPSAIFNISSLQYIGLTYNSLSGT 211

Query: 190 VPKEIC-NLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGL 248
           +P ++C +L KL+GLYL GN+L G+IP   G    LE +SLS NE  G+IPR  G+L+ L
Sbjct: 212 LPMDMCYSLPKLRGLYLSGNQLSGKIPTSLGKCGRLEEISLSFNEFMGSIPRGIGSLSVL 271

Query: 249 GILQLSDNFLTGITPSSIYKL 269
            +L L  N L G  P +++ L
Sbjct: 272 EVLYLGSNNLEGEIPQTLFNL 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578886|ref|XP_002530297.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223530195|gb|EEF32104.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  200 bits (508), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 120/287 (41%), Positives = 158/287 (55%), Gaps = 26/287 (9%)

Query: 5   TSTITTDRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLN 64
            + I +D+DALLALK  I  DP N  A NW+ +T VC W GVTC     RVT L++S + 
Sbjct: 28  VTNIASDQDALLALKVRIIRDPNNLLAANWSITTSVCTWVGVTCGARHGRVTALDLSDMG 87

Query: 65  LTGTIPSQLGNLS------------------------SLQSLNLSCNRLSGSIPSAIFTT 100
           LTGTIP  LGNLS                         +++  +S N  SG IPS I + 
Sbjct: 88  LTGTIPPHLGNLSFLAFISFYNNRFHGSLPDELSKLRRIKAFGMSTNYFSGEIPSWIGSF 147

Query: 101 YTLKYVSFRKNQLSGAFPSFAFN--TSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS 158
             L+ +S   N+ +G  P+   N   SSL  LDFG N L+G +P NI ++L  L  L L+
Sbjct: 148 TQLQRLSLSSNKFTGLLPAILANNTISSLWLLDFGTNNLTGRLPPNIFTHLANLRALYLN 207

Query: 159 QNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES 218
            N+F+G IPS L  C  L+ L LS N F G + K+I NLT L+ LYLGGN   G IP E 
Sbjct: 208 SNLFNGPIPSTLMACQQLKLLALSFNHFEGSIHKDIGNLTMLQELYLGGNNFSGTIPDEI 267

Query: 219 GNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSS 265
           G+LA LE + L+ N L G +P    N + +  + L+ N L+G  PSS
Sbjct: 268 GDLAHLEEIILNVNGLSGLVPSGIYNASKMTAIGLALNQLSGYLPSS 314

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139658|ref|XP_002323215.1| predicted protein [Populus trichocarpa] gi|222867845|gb|EEF04976.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 119/280 (42%), Positives = 152/280 (54%), Gaps = 26/280 (9%)

Query: 10  TDRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTI 69
           TD+ ALLA K HIT DP N    +W++ T  CNW GV+C +   RVT L++S + L GTI
Sbjct: 30  TDQSALLAFKDHITFDPQNMLTHSWSSKTSFCNWMGVSCSLRRQRVTALDLSSMGLLGTI 89

Query: 70  PSQLGNLSSLQSLNLSCNRLSGSIPSAIFTT-------------------------YTLK 104
           P QLGNLS LQ L L  N   G +PS I                            + L+
Sbjct: 90  PPQLGNLSFLQYLILYNNSFHGDLPSEIGNLRRLQVMDIGSNKLSLVIVPESFGNLHRLE 149

Query: 105 YVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHG 164
            + F  N L+G  PS  FN SSL+ LD  FN L G +P N+C +LP LE L LS N   G
Sbjct: 150 ELRFDGNNLTGTIPSTIFNISSLKVLDLMFNGLFGSLPKNMCDHLPRLEMLLLSSNQLSG 209

Query: 165 GIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAEL 224
            IPS L  C  LQ L L  N+F+GV+P+E+  L  L+ L LG N L G++PR   N+  L
Sbjct: 210 QIPSDLFKCRELQLLWLPYNNFTGVIPEELGFLPMLEVLNLGVNMLSGDLPRSIFNMTSL 269

Query: 225 ELMSLSENELQGAIPREWG-NLTGLGILQLSDNFLTGITP 263
             M +  N L G+IP+E   +L  L  LQL+ N +TG  P
Sbjct: 270 RTMQICCNNLSGSIPQENSIDLPNLEELQLNLNGITGSMP 309

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510768|ref|XP_003524106.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Glycine max]

 Score =  193 bits (490), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 107/270 (39%), Positives = 157/270 (58%), Gaps = 1/270 (0%)

Query: 6   STITTDRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNL 65
           +  TTD+ ALLALK+ IT DP NF   NW+ +T VCNW GVTCD +  RV  LN+  ++L
Sbjct: 29  TNFTTDKLALLALKSSITRDPHNFLTHNWSATTSVCNWVGVTCDAYHGRVRTLNLGDMSL 88

Query: 66  TGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTS 125
           +G +PS LGNL+ L  L+L  N+  G +P  +   + LK+++   N+ SG    +    S
Sbjct: 89  SGIMPSHLGNLTFLNKLDLGGNKFHGQLPEELVQLHRLKFLNLSYNEFSGNVSEWIGGLS 148

Query: 126 SLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSND 185
           +L+YL+ G N   G IP +I SNL  LE +    N   G IP  +     L+ L + SN 
Sbjct: 149 TLRYLNLGNNDFGGFIPKSI-SNLTMLEIMDWGNNFIQGTIPPEVGKMTQLRVLSMYSNR 207

Query: 186 FSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNL 245
            SG +P+ + NL+ L+G+ L  N L G IP E G L +LE+M L +N L G+IP    N 
Sbjct: 208 LSGTIPRTVSNLSSLEGISLSYNSLSGGIPSEIGELPQLEIMYLGDNPLGGSIPSTIFNN 267

Query: 246 TGLGILQLSDNFLTGITPSSIYKLLFSIKF 275
           + L  ++L  + L+G  PS++ + L +I+ 
Sbjct: 268 SMLQDIELGSSNLSGSLPSNLCQGLPNIQI 297

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485449|ref|XP_002276919.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/270 (42%), Positives = 164/270 (60%), Gaps = 2/270 (0%)

Query: 1   ATANTSTITTDRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNI 60
           A A + T  +D  ALLALKAHIT+D     A NW+++T  CNW GV+C+ H  R+T LN+
Sbjct: 207 AMAVSLTNLSDEYALLALKAHITYDSQGILATNWSSTTSYCNWFGVSCNAHHGRLTALNL 266

Query: 61  SRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSF 120
           S + L GTIP Q+ NLS L SL+LS N    S+P+ I     L+ + F  N+L+G+ P  
Sbjct: 267 SNMGLEGTIPPQVSNLSFLASLDLSDNYFHASLPNEIGNCRQLRQLYFFNNELTGSIPQS 326

Query: 121 AFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLG 180
             N S L+      N L+G+IP  + SNL  L+ L+L  N   G IPS + N + LQ + 
Sbjct: 327 LGNLSKLEESYLDSNHLTGDIPEEM-SNLLSLKILSLFVNNLTGSIPSGIFNISSLQSIS 385

Query: 181 LSSNDFSGVVPKEICN-LTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIP 239
           LS+ND  G +P ++C+ +  L GLYL  N+L G+IP    N A+L+L+SLS NE  G+IP
Sbjct: 386 LSANDLYGNLPMDMCDRIPNLNGLYLSYNQLSGQIPTSLHNCAKLQLISLSYNEFIGSIP 445

Query: 240 REWGNLTGLGILQLSDNFLTGITPSSIYKL 269
           +  GNL+ L +L L    LTG  P +++ +
Sbjct: 446 KGIGNLSELEVLYLGQKHLTGEIPEALFNI 475

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086336|emb|CBI31777.3| unnamed protein product [Vitis vinifera]

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/293 (39%), Positives = 162/293 (55%), Gaps = 38/293 (12%)

Query: 11  DRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIP 70
           D  +LLA+KAHIT D  +  A NW+T+T  CNW GV+CD    RV  L++S ++L GTI 
Sbjct: 34  DELSLLAMKAHITSDSKDVLATNWSTTTSYCNWFGVSCDAARQRVIALDLSNMDLEGTIA 93

Query: 71  SQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYL 130
            Q+GNLS L +L+LS N    SIP+ I     L+ +    N+L+G+ P    N S L+ L
Sbjct: 94  PQVGNLSFLVTLDLSNNSFHASIPNEIAKCRELRQLYLFNNRLTGSIPQAIGNLSKLEQL 153

Query: 131 DFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSN---------CAYLQRLGL 181
             G N L+GEIP  I S+L  L+ L+   N     IPSA+ N         C  L+ + L
Sbjct: 154 YLGGNQLTGEIPREI-SHLLSLKILSFRSNNLTASIPSAIFNISSLQYIGKCGRLEEISL 212

Query: 182 SSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLA------------------- 222
           S N+F G +P+ I +L+ L+ LYLG N L+GEIP+   NL+                   
Sbjct: 213 SFNEFMGSIPRGIGSLSVLEVLYLGSNNLEGEIPQTLFNLSSLPRLQVINLSQNQLKGEI 272

Query: 223 --------ELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLT-GITPSSI 266
                   EL+ + L +N++QG IP+E G+L+ L  L L+ N LT GI P+SI
Sbjct: 273 PPSLSNCGELQTLYLEKNKIQGNIPKELGHLSELQYLSLASNILTGGIIPASI 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740829|emb|CBI31011.3| unnamed protein product [Vitis vinifera]

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 112/259 (43%), Positives = 151/259 (58%), Gaps = 10/259 (3%)

Query: 10   TDRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTI 69
             D  AL+ALKAHIT+D     A NW+T +  CNW G++C+    RV+ +N+S + L GTI
Sbjct: 1077 VDEFALIALKAHITYDSQGILATNWSTKSSYCNWYGISCNAPQQRVSAINLSNMGLEGTI 1136

Query: 70   PSQLGNLSS-LQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQ 128
              Q+GNLS  LQ LNL  N+L G IP AI     L+ +    NQL G  P    +  +L+
Sbjct: 1137 APQVGNLSFLLQQLNLFNNKLVGGIPEAICNLSKLEELYLGNNQLIGEIPKKMNHLQNLK 1196

Query: 129  YLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSG 188
             L F  N L+G IPA I  N+  L  ++LS N   G      S C  LQ + L+ NDF+G
Sbjct: 1197 VLSFPMNNLTGSIPATIF-NISSLLNISLSNNNLSG------SQCIQLQVISLAYNDFTG 1249

Query: 189  VVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGL 248
             +P  I NL  L+GL L  N+  G IP+  G+L+ LE + L+ N+L G IPRE GNL+ L
Sbjct: 1250 SIPNGIGNL--LRGLSLSINQFTGGIPQAIGSLSNLEELYLNYNKLTGGIPREIGNLSNL 1307

Query: 249  GILQLSDNFLTGITPSSIY 267
             ILQL  N ++G  P+ I+
Sbjct: 1308 NILQLGSNGISGPIPAEIF 1326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583729|ref|XP_002532618.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223527674|gb|EEF29784.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 127/355 (35%), Positives = 160/355 (45%), Gaps = 99/355 (27%)

Query: 5   TSTITTDRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLN 64
            + + TD+D LLALK  +  DP N  A NW+T+T VC W GVTC     RV  L++S + 
Sbjct: 27  VTNLATDQDGLLALKLRLIRDPNNLLATNWSTTTSVCTWVGVTCGARHGRVAALDLSDMG 86

Query: 65  LTGTIPSQLGNLS----------------------------------------------- 77
           LTGT+P  LGNLS                                               
Sbjct: 87  LTGTVPPHLGNLSFLVFISFYNNSFHGSLPNELSKLRRMKTFWLTKNYFSGEIPSWLGSF 146

Query: 78  -SLQSLNLSCNRLSGSIPSAIFTTYTLKY------------------------VSFRKNQ 112
             LQ L+L  N+ +G IP + F    L +                        +S  KN 
Sbjct: 147 ARLQQLSLGFNKFTGVIPVSFFNLSKLNFFDLSSNKLQGYIPKAIGNLNSLRILSLEKNN 206

Query: 113 LSGAFPSFAFNTSSLQYLD--------------------------FGFNTLSGEIPANIC 146
            SG+ PS  FN SSLQ +D                          FGFN L+G +PAN+ 
Sbjct: 207 FSGSIPSGIFNISSLQVIDLSDNRLSGSMPAILDNNTMPSLLQLDFGFNNLTGHLPANMF 266

Query: 147 SNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLG 206
           ++LP LE L LS N+FHG IPS L  C  L+ L L  N F G + K+I NLT L+ L L 
Sbjct: 267 THLPNLEALYLSWNLFHGPIPSTLIRCKQLKHLILPYNHFEGSIDKDIGNLTMLQELNLD 326

Query: 207 GNRLQG-EIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTG 260
            N  +G EIP   GNL  +E ++L  N L G IP   GNLT L  L LS+N LTG
Sbjct: 327 LNNFKGTEIPTSIGNLFYMERLTLHRNGLIGPIPSSLGNLTQLKRLILSENGLTG 381

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204751|emb|CBI25249.3| unnamed protein product [Vitis vinifera]

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/287 (41%), Positives = 153/287 (53%), Gaps = 28/287 (9%)

Query: 10  TDRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTI 69
           TD+ +LLALKAHIT DP +  A NW+T T  C W GV+C+    RV  L++S L L GTI
Sbjct: 506 TDQSSLLALKAHITLDPHHVLAGNWSTKTSFCEWIGVSCNAQQQRVIALDLSNLGLRGTI 565

Query: 70  PSQLGNLSSLQSLNLSCNR------------------------LSGSIPSAIFTTYTLKY 105
           P  LGNLS L SL+LS N                          +G+IP +I     L+ 
Sbjct: 566 PPDLGNLSFLVSLDLSSNNFHGPIPPSFGNLNRLQSLFLGNNSFTGTIPPSIGNMSMLET 625

Query: 106 VSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGG 165
           +  + NQL GA PS  FN SSLQ +   +N+LSG IP  I S LP LEYL L  N F   
Sbjct: 626 LDIQSNQLVGAIPSAIFNISSLQEIALTYNSLSGTIPEEI-SFLPSLEYLYLRSNSFTSP 684

Query: 166 IPSALSNCAYLQRLGLSSNDFSGVVPKEI--CNLTKLKGLYLGGNRLQGEIPRESGNLAE 223
           IPSA+   + L+ + L  N FSG +P +I   +   L+ + L  NR  G I    GN   
Sbjct: 685 IPSAIFKISTLKAIDLGKNGFSGSMPLDIMCAHRPSLQLIGLDSNRFTGTIHGGIGNCTS 744

Query: 224 LELMSLSENEL-QGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
           L  + LS N+L  G +P E G+L  L +L + DN LTG  P  I+ +
Sbjct: 745 LRELYLSSNDLTAGEVPCEIGSLCTLNVLNIEDNSLTGHIPFQIFNI 791

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583725|ref|XP_002532616.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223527672|gb|EEF29782.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 116/282 (41%), Positives = 144/282 (51%), Gaps = 28/282 (9%)

Query: 5   TSTITTDRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLN 64
            + I+TD+DALLALK  I  DP +    NW+T+T VC W GVTC    +RVT LN+S + 
Sbjct: 29  VTNISTDQDALLALKVRIVGDPNSLLTTNWSTATSVCTWIGVTCGARHNRVTALNLSHMG 88

Query: 65  LTGTIPSQLG--------------------------NLSSLQSLNLSCNRLSGSIPSAIF 98
           L GTIP  LG                          NLS L    LS N L G IP AI 
Sbjct: 89  LAGTIPPHLGNLSFLVFGCLNMFAVLYIGVIPTSLFNLSKLSIFYLSSNNLQGYIPEAIG 148

Query: 99  TTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS 158
             Y+L+ +S  KN+ S + PS  FN SSL+ +DF  N  SG IP  I  NL  LE + L 
Sbjct: 149 NLYSLRLLSLEKNEFSDSIPSSIFNISSLEQIDFSNNRFSGIIPDEI-GNLANLELINLG 207

Query: 159 QNMFHGGIPSALSNCAYLQRLGLSSNDFSG-VVPKEICNLTKLKGLYLGGNRLQGEIPRE 217
            N   G +PS + N + +  + LSSN  SG +       L  L+ L+LGGN   G IP  
Sbjct: 208 VNRLAGVVPSGIYNASKMMVISLSSNQLSGHLPSSLGLLLPNLRRLFLGGNNFTGPIPIS 267

Query: 218 SGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLT 259
             N +EL L++L  N   G IP E GNL  L  L L  N LT
Sbjct: 268 LSNASELTLIALPSNSFFGHIPDELGNLRSLQYLYLWGNHLT 309

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
TAIR|locus:2097310	1002	BAM2 "BARELY ANY MERISTEM 2" [	0.942	0.262	0.340	3e-32
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.888	0.218	0.350	5.7e-31
TAIR|locus:2169965	1003	BAM1 "BARELY ANY MERISTEM 1" [	0.881	0.245	0.330	1.5e-27
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.870	0.257	0.345	4.8e-27
TAIR|locus:2005629	1140	AT1G75640 [Arabidopsis thalian	0.921	0.225	0.316	1.1e-26
TAIR|locus:2120412	992	BAM3 "BARELY ANY MERISTEM 3" [	0.924	0.260	0.315	1.4e-26
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.913	0.217	0.311	2.3e-26
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.849	0.265	0.337	3.1e-26
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.845	0.246	0.330	4.5e-26
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.974	0.269	0.294	1.7e-25

TAIR|locus:2097310 BAM2 "BARELY ANY MERISTEM 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 3.0e-32, P = 3.0e-32
 Identities = 91/267 (34%), Positives = 130/267 (48%)

Query:    10 TDRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTI 69
             T+  ALL+LK+  T D  +    +WN ST  C+WTGVTCDV    VT L++S LNL+GT+
Sbjct:    26 TELHALLSLKSSFTIDEHSPLLTSWNLSTTFCSWTGVTCDVSLRHVTSLDLSGLNLSGTL 85

Query:    70 PXXXXXXXXXXXXXXXXXXXXGSIPSAIFTTYTLKYVSFRKNQLSGAFPS-FAFNTSSLQ 128
                                  G IP  I   Y L++++   N  +G+FP   +    +L+
Sbjct:    86 SSDVAHLPLLQNLSLAANQISGPIPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLR 145

Query:   129 YLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSG 188
              LD   N L+G++P ++ +NL  L +L L  N F G IP+       L+ L +S N+ +G
Sbjct:   146 VLDLYNNNLTGDLPVSL-TNLTQLRHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNELTG 204

Query:   189 VVPKEICNLTKLKGLYLGG-NRLQGEIPRESGXXXXXXXXXXXXXXXQGAIPREWGNLTG 247
              +P EI NLT L+ LY+G  N  +  +P E G                G IP E G L  
Sbjct:   205 KIPPEIGNLTTLRELYIGYYNAFENGLPPEIGNLSELVRFDAANCGLTGEIPPEIGKLQK 264

Query:   248 LGILQLSDNFLTGITPSSIYKLLFSIK 274
             L  L L  N  TG     +  L+ S+K
Sbjct:   265 LDTLFLQVNAFTGTITQEL-GLISSLK 290

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 5.7e-31, P = 5.7e-31
 Identities = 90/257 (35%), Positives = 124/257 (48%)

Query:    13 DALLALKAHITHDPTNFFAKNWNTSTPV--CNWTGVTCDVHSHRVTVLNISRLNLTGTIP 70
             DAL A K ++ HDP      +W+ STP   C+W GV C   +HRVT + + RL L+G I 
Sbjct:    30 DALTAFKLNL-HDPLGALT-SWDPSTPAAPCDWRGVGCT--NHRVTEIRLPRLQLSGRIS 85

Query:    71 XXXXXXXXXXXXXXXXXXXXGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYL 130
                                 G+IP+++     L  V  + N LSG  P    N +SL+  
Sbjct:    86 DRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLEVF 145

Query:   131 DFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVV 190
             +   N LSGEIP  + S+L FL+   +S N F G IPS L+N   LQ L LS N  +G +
Sbjct:   146 NVAGNRLSGEIPVGLPSSLQFLD---ISSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEI 202

Query:   191 PKEICNLTKLKGLYLGGNRLQGEIPRESGXXXXXXXXXXXXXXXQGAIPREWGNLTGLGI 250
             P  + NL  L+ L+L  N LQG +P                    G IP  +G L  L +
Sbjct:   203 PASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVIPAAYGALPKLEV 262

Query:   251 LQLSDNFLTGITPSSIY 267
             L LS+N  +G  P S++
Sbjct:   263 LSLSNNNFSGTVPFSLF 279

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2169965 BAM1 "BARELY ANY MERISTEM 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 1.5e-27, P = 1.5e-27
 Identities = 83/251 (33%), Positives = 119/251 (47%)

Query:    14 ALLALKAHITH--DPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPX 71
             ALL+LK  +T   D  N    +W  ST  C W GVTCDV    VT L++S LNL+GT+  
Sbjct:    28 ALLSLKTSLTGAGDDKNSPLSSWKVSTSFCTWIGVTCDVSRRHVTSLDLSGLNLSGTLSP 87

Query:    72 XXXXXXXXXXXXXXXXXXXGSIPSAIFTTYTLKYVSFRKNQLSGAFPS-FAFNTSSLQYL 130
                                G IP  I +   L++++   N  +G+FP   +    +L+ L
Sbjct:    88 DVSHLRLLQNLSLAENLISGPIPPEISSLSGLRHLNLSNNVFNGSFPDEISSGLVNLRVL 147

Query:   131 DFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVV 190
             D   N L+G++P ++ +NL  L +L L  N F G IP +  +   ++ L +S N+  G +
Sbjct:   148 DVYNNNLTGDLPVSV-TNLTQLRHLHLGGNYFAGKIPPSYGSWPVIEYLAVSGNELVGKI 206

Query:   191 PKEICNLTKLKGLYLGG-NRLQGEIPRESGXXXXXXXXXXXXXXXQGAIPREWGNLTGLG 249
             P EI NLT L+ LY+G  N  +  +P E G                G IP E G L  L 
Sbjct:   207 PPEIGNLTTLRELYIGYYNAFEDGLPPEIGNLSELVRFDGANCGLTGEIPPEIGKLQKLD 266

Query:   250 ILQLSDNFLTG 260
              L L  N  +G
Sbjct:   267 TLFLQVNVFSG 277

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0043621 "protein self-association" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 4.8e-27, P = 4.8e-27
 Identities = 86/249 (34%), Positives = 110/249 (44%)

Query:    20 AHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPXXXXXXXXX 79
             + ++  PT    ++W  ++  CNW G+TCD  S  V  L++S   L G+           
Sbjct:    69 SRVSPHPTT---ESWRNNSDCCNWEGITCDTKSGEVIELDLSCSWLYGSFHSNSSLFRLQ 125

Query:    80 XXXXXXXXXXX--GSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTL 137
                          G IPS+I     L  +    NQ  G  PS   N S L  L    N  
Sbjct:   126 NLRVLDLTQNDLDGEIPSSIGNLSHLTSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQF 185

Query:   138 SGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNL 197
             SG+IP++I  NL  L  L LS N F G IPS++ N + L  L L SNDF G +P  I NL
Sbjct:   186 SGQIPSSI-GNLSHLTSLELSSNQFSGQIPSSIGNLSNLTFLSLPSNDFFGQIPSSIGNL 244

Query:   198 TKLKGLYLGGNRLQGEIPRESGXXXXXXXXXXXXXXXQGAIPREWGNLTGLGILQLSDNF 257
              +L  LYL  N   GEIP   G                G +P    NLT L  L LS N 
Sbjct:   245 ARLTYLYLSYNNFVGEIPSSFGNLNQLIVLQVDSNKLSGNVPISLLNLTRLSALLLSHNQ 304

Query:   258 LTGITPSSI 266
              TG  P++I
Sbjct:   305 FTGTIPNNI 313

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2005629 AT1G75640 [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 1.1e-26, P = 1.1e-26
 Identities = 84/265 (31%), Positives = 123/265 (46%)

Query:     4 NTSTITTDRDALLALKAHITHDPTNFFAKNWNTSTPV--CNWTGVTCDVHSHRVTVLNIS 61
             +TS I+++  AL + K  + HDP     ++WN S+P   C+W GV+C   S RV  L + 
Sbjct:    21 HTSAISSETQALTSFKLSL-HDPLGAL-ESWNQSSPSAPCDWHGVSC--FSGRVRELRLP 76

Query:    62 RLNLTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFA 121
             RL+LTG +                     G++PS++     L+ +    N  SG FP   
Sbjct:    77 RLHLTGHLSPRLGELTQLRKLSLHTNDINGAVPSSLSRCVFLRALYLHYNSFSGDFPPEI 136

Query:   122 FNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGL 181
              N  +LQ L+   N+L+G +     S    L Y+ LS N   G IP+  S  + LQ + L
Sbjct:   137 LNLRNLQVLNAAHNSLTGNLSDVTVSKS--LRYVDLSSNAISGKIPANFSADSSLQLINL 194

Query:   182 SSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGXXXXXXXXXXXXXXXQGAIPRE 241
             S N FSG +P  +  L  L+ L+L  N+LQG IP                    G IP  
Sbjct:   195 SFNHFSGEIPATLGQLQDLEYLWLDSNQLQGTIPSALANCSSLIHFSVTGNHLTGLIPVT 254

Query:   242 WGNLTGLGILQLSDNFLTGITPSSI 266
              G +  L ++ LS+N  TG  P S+
Sbjct:   255 LGTIRSLQVISLSENSFTGTVPVSL 279

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2120412 BAM3 "BARELY ANY MERISTEM 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 1.4e-26, P = 1.4e-26
 Identities = 85/269 (31%), Positives = 128/269 (47%)

Query:     4 NTSTITTDRDALLALKAHI-THDPTNFFAKNWNTST--PVCNWTGVTCDVHSHRVTVLNI 60
             N S I    + L++LK    ++DP+     +WN      +C+WTGV+CD  +  +T L++
Sbjct:    28 NLSLIR-QANVLISLKQSFDSYDPS---LDSWNIPNFNSLCSWTGVSCDNLNQSITRLDL 83

Query:    61 SRLNLTGTI-PXXXXXXXXXXXXXXXXXXXXGSIPSAIFTTYTLKYVSFRKNQLSGAFPS 119
             S LN++GTI P                    G +P  I+    L+ ++   N   G   +
Sbjct:    84 SNLNISGTISPEISRLSPSLVFLDISSNSFSGELPKEIYELSGLEVLNISSNVFEGELET 143

Query:   120 FAFNT-SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQR 178
               F+  + L  LD   N+ +G +P ++ + L  LE+L L  N F G IP +  +   L+ 
Sbjct:   144 RGFSQMTQLVTLDAYDNSFNGSLPLSL-TTLTRLEHLDLGGNYFDGEIPRSYGSFLSLKF 202

Query:   179 LGLSSNDFSGVVPKEICNLTKLKGLYLGG-NRLQGEIPRESGXXXXXXXXXXXXXXXQGA 237
             L LS ND  G +P E+ N+T L  LYLG  N  +G IP + G               +G+
Sbjct:   203 LSLSGNDLRGRIPNELANITTLVQLYLGYYNDYRGGIPADFGRLINLVHLDLANCSLKGS 262

Query:   238 IPREWGNLTGLGILQLSDNFLTGITPSSI 266
             IP E GNL  L +L L  N LTG  P  +
Sbjct:   263 IPAELGNLKNLEVLFLQTNELTGSVPREL 291

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048437 "floral organ development" evidence=IGI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048653 "anther development" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 2.3e-26, P = 2.3e-26
 Identities = 81/260 (31%), Positives = 115/260 (44%)

Query:    13 DALLALKAHITHDPTNFFAKNWNT--STPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIP 70
             +AL + K  I++DP    + +W    S   CNWTG+TCD   H V+V  + +  L G + 
Sbjct:    32 EALKSFKNGISNDPLGVLS-DWTIIGSLRHCNWTGITCDSTGHVVSVSLLEK-QLEGVLS 89

Query:    71 XXXXXXXXXXXXXXXXXXXXGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYL 130
                                 G IP+ I     L  +    N  SG+ PS  +   ++ YL
Sbjct:    90 PAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYL 149

Query:   131 DFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVV 190
             D   N LSG++P  IC     L  +    N   G IP  L +  +LQ    + N  +G +
Sbjct:   150 DLRNNLLSGDVPEEICKTSS-LVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSI 208

Query:   191 PKEICNLTKLKGLYLGGNRLQGEIPRESGXXXXXXXXXXXXXXXQGAIPREWGNLTGLGI 250
             P  I  L  L  L L GN+L G+IPR+ G               +G IP E GN + L  
Sbjct:   209 PVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQ 268

Query:   251 LQLSDNFLTGITPSSIYKLL 270
             L+L DN LTG  P+ +  L+
Sbjct:   269 LELYDNQLTGKIPAELGNLV 288

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 3.1e-26, P = 3.1e-26
 Identities = 81/240 (33%), Positives = 108/240 (45%)

Query:    32 KNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPXXXXXXXXXXXXXXXXXXXX- 90
             ++W  ++  CNW GVTC+  S  V  LN+S  +L G                        
Sbjct:    11 ESWGNNSDCCNWEGVTCNAKSGEVIELNLSCSSLHGRFHSNSSIRNLHFLTTLDRSHNDF 70

Query:    91 -GSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNL 149
              G I S+I     L  +    N+ SG   +   N S L  LD  FN  SG+IP++I  NL
Sbjct:    71 EGQITSSIENLSHLTSLDLSYNRFSGQILNSIGNLSRLTSLDLSFNQFSGQIPSSI-GNL 129

Query:   150 PFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNR 209
               L +L LS N F G IPS++ N ++L  LGLS N F G  P  I  L+ L  L+L  N+
Sbjct:   130 SHLTFLGLSGNRFFGQIPSSIGNLSHLTFLGLSGNRFFGQFPSSIGGLSNLTNLHLSYNK 189

Query:   210 LQGEIPRESGXXXXXXXXXXXXXXXQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
               G+IP   G                G IP  +GNL  L  L +S N L G  P+ +  L
Sbjct:   190 YSGQIPSSIGNLSQLIVLYLSVNNFYGEIPSSFGNLNQLTRLDVSFNKLGGNFPNVLLNL 249

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 4.5e-26, P = 4.5e-26
 Identities = 79/239 (33%), Positives = 106/239 (44%)

Query:    33 NWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPXXXXXXXXXXXXXXXXXXXX-- 90
             +W  ++  CNW GVTC+  S  V  L++S  +L G                         
Sbjct:    75 SWGNNSDCCNWEGVTCNAKSGEVIELDLSCSSLHGRFHSNSSIRNLHFLTTLDLSFNDFK 134

Query:    91 GSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLP 150
             G I S+I     L Y+    N  SG   +   N S L YL+   N  SG+ P++IC NL 
Sbjct:   135 GQITSSIENLSHLTYLDLSSNHFSGQILNSIGNLSRLTYLNLFDNQFSGQAPSSIC-NLS 193

Query:   151 FLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRL 210
              L +L LS N F G  PS++   ++L  L L SN FSG +P  I NL+ L  L L  N  
Sbjct:   194 HLTFLDLSYNRFFGQFPSSIGGLSHLTTLSLFSNKFSGQIPSSIGNLSNLTTLDLSNNNF 253

Query:   211 QGEIPRESGXXXXXXXXXXXXXXXQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
              G+IP   G                G IP  +GNL  L  L + DN L+G  P+ +  L
Sbjct:   254 SGQIPSFIGNLSQLTFLGLFSNNFVGEIPSSFGNLNQLTRLYVDDNKLSGNFPNVLLNL 312

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 1.7e-25, P = 1.7e-25
 Identities = 81/275 (29%), Positives = 121/275 (44%)

Query:     3 ANTSTITTDRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISR 62
             A+  T  TDR ALL  K+ ++    +  + +WN S P+CNW  VTC     RVT LN+  
Sbjct:    17 ADGFTDETDRQALLEFKSQVSEGKRDVLS-SWNNSFPLCNWKWVTCGRKHKRVTHLNLGG 75

Query:    63 LNLTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAF 122
             L L G +                     G IP  +   + L+++    N L G  P+   
Sbjct:    76 LQLGGIVSPSIGNVSFLISLDLSDNAFGGIIPREVGNLFRLEHLYMAFNSLEGGIPATLS 135

Query:   123 NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLS 182
             N S L  LD   N L   +P+ + S L  L  L L +N   G +P +L N   L+ LG +
Sbjct:   136 NCSRLLNLDLYSNPLRQGVPSELGS-LTKLVILDLGRNNLKGKLPRSLGNLTSLKSLGFT 194

Query:   183 SNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGXXXXXXXXXXXXXXXQGAIPREW 242
              N+  G VP E+  L+++ GL L  N+  G  P                    G++  ++
Sbjct:   195 DNNIEGEVPDELARLSQMVGLGLSMNKFFGVFPPAIYNLSALEDLFLFGSGFSGSLKPDF 254

Query:   243 GNLT-GLGILQLSDNFLTGITPSSIYKLLFSIKFG 276
             GNL   +  L L +N L G  P+++  +    KFG
Sbjct:   255 GNLLPNIRELNLGENDLVGAIPTTLSNISTLQKFG 289

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	279
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-49
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-35
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-34
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-34
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-30
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-28
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	5e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  174 bits (442), Expect = 3e-49
 Identities = 108/259 (41%), Positives = 151/259 (58%), Gaps = 13/259 (5%)

Query: 15  LLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLG 74
           LL+ K+ I +DP  + + NWN+S  VC W G+TC+ +S RV  +++S  N++G I S + 
Sbjct: 34  LLSFKSSI-NDPLKYLS-NWNSSADVCLWQGITCN-NSSRVVSIDLSGKNISGKISSAIF 90

Query: 75  NLSSLQSLNLSCNRLSGSIPSAIFTT-YTLKYVSFRKNQLSGAFPS-FAFNTSSLQYLDF 132
            L  +Q++NLS N+LSG IP  IFTT  +L+Y++   N  +G+ P     N   L+ LD 
Sbjct: 91  RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN---LETLDL 147

Query: 133 GFNTLSGEIPANI--CSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVV 190
             N LSGEIP +I   S+L  L+   L  N+  G IP++L+N   L+ L L+SN   G +
Sbjct: 148 SNNMLSGEIPNDIGSFSSLKVLD---LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 191 PKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGI 250
           P+E+  +  LK +YLG N L GEIP E G L  L  + L  N L G IP   GNL  L  
Sbjct: 205 PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264

Query: 251 LQLSDNFLTGITPSSIYKL 269
           L L  N L+G  P SI+ L
Sbjct: 265 LFLYQNKLSGPIPPSIFSL 283

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  133 bits (336), Expect = 4e-35
 Identities = 78/213 (36%), Positives = 115/213 (53%), Gaps = 1/213 (0%)

Query: 54  RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQL 113
            + VL++    L G IP+ L NL+SL+ L L+ N+L G IP  +    +LK++    N L
Sbjct: 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224

Query: 114 SGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNC 173
           SG  P      +SL +LD  +N L+G IP+++  NL  L+YL L QN   G IP ++ + 
Sbjct: 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Query: 174 AYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENE 233
             L  L LS N  SG +P+ +  L  L+ L+L  N   G+IP    +L  L+++ L  N+
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 234 LQGAIPREWGNLTGLGILQLSDNFLTGITPSSI 266
             G IP+  G    L +L LS N LTG  P  +
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  129 bits (327), Expect = 6e-34
 Identities = 77/197 (39%), Positives = 104/197 (52%), Gaps = 1/197 (0%)

Query: 64  NLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFN 123
           NLTG IPS LGNL +LQ L L  N+LSG IP +IF+   L  +    N LSG  P     
Sbjct: 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306

Query: 124 TSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSS 183
             +L+ L    N  +G+IP  + S LP L+ L L  N F G IP  L     L  L LS+
Sbjct: 307 LQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365

Query: 184 NDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWG 243
           N+ +G +P+ +C+   L  L L  N L+GEIP+  G    L  + L +N   G +P E+ 
Sbjct: 366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT 425

Query: 244 NLTGLGILQLSDNFLTG 260
            L  +  L +S+N L G
Sbjct: 426 KLPLVYFLDISNNNLQG 442

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  129 bits (326), Expect = 7e-34
 Identities = 89/209 (42%), Positives = 114/209 (54%), Gaps = 7/209 (3%)

Query: 64  NLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFN 123
           NL+G IP ++G L+SL  L+L  N L+G IPS++     L+Y+   +N+LSG  P   F+
Sbjct: 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282

Query: 124 TSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSS 183
              L  LD   N+LSGEIP  +   L  LE L L  N F G IP AL++   LQ L L S
Sbjct: 283 LQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341

Query: 184 NDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPR---ESGNLAELELMSLSENELQGAIPR 240
           N FSG +PK +     L  L L  N L GEIP     SGNL +L L S   N L+G IP+
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS---NSLEGEIPK 398

Query: 241 EWGNLTGLGILQLSDNFLTGITPSSIYKL 269
             G    L  ++L DN  +G  PS   KL
Sbjct: 399 SLGACRSLRRVRLQDNSFSGELPSEFTKL 427

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  119 bits (300), Expect = 3e-30
 Identities = 78/212 (36%), Positives = 115/212 (54%), Gaps = 2/212 (0%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS 114
           +TVL++S  NLTG IP  L +  +L  L L  N L G IP ++    +L+ V  + N  S
Sbjct: 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCA 174
           G  PS       + +LD   N L G I +    ++P L+ L+L++N F GG+P       
Sbjct: 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPD-SFGSK 475

Query: 175 YLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENEL 234
            L+ L LS N FSG VP+++ +L++L  L L  N+L GEIP E  +  +L  + LS N+L
Sbjct: 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535

Query: 235 QGAIPREWGNLTGLGILQLSDNFLTGITPSSI 266
            G IP  +  +  L  L LS N L+G  P ++
Sbjct: 536 SGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  112 bits (282), Expect = 6e-28
 Identities = 74/212 (34%), Positives = 110/212 (51%), Gaps = 2/212 (0%)

Query: 54  RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQL 113
           R+ VL +     +G IP  LG  ++L  L+LS N L+G IP  + ++  L  +    N L
Sbjct: 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392

Query: 114 SGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNC 173
            G  P       SL+ +    N+ SGE+P+   + LP + +L +S N   G I S   + 
Sbjct: 393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEF-TKLPLVYFLDISNNNLQGRINSRKWDM 451

Query: 174 AYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENE 233
             LQ L L+ N F G +P +     +L+ L L  N+  G +PR+ G+L+EL  + LSEN+
Sbjct: 452 PSLQMLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK 510

Query: 234 LQGAIPREWGNLTGLGILQLSDNFLTGITPSS 265
           L G IP E  +   L  L LS N L+G  P+S
Sbjct: 511 LSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 89.9 bits (223), Expect = 4e-20
 Identities = 62/170 (36%), Positives = 87/170 (51%), Gaps = 6/170 (3%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS 114
           V  L+IS  NL G I S+  ++ SLQ L+L+ N+  G +P + F +  L+ +   +NQ S
Sbjct: 430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFS 488

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANI--CSNLPFLEYLALSQNMFHGGIPSALSN 172
           GA P    + S L  L    N LSGEIP  +  C  L  L+   LS N   G IP++ S 
Sbjct: 489 GAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD---LSHNQLSGQIPASFSE 545

Query: 173 CAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLA 222
              L +L LS N  SG +PK + N+  L  + +  N L G +P     LA
Sbjct: 546 MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLA 595

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 78.0 bits (192), Expect = 4e-16
 Identities = 47/117 (40%), Positives = 64/117 (54%), Gaps = 1/117 (0%)

Query: 52  SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKN 111
           S R+  L++SR   +G +P +LG+LS L  L LS N+LSG IP  + +   L  +    N
Sbjct: 474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533

Query: 112 QLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPS 168
           QLSG  P+       L  LD   N LSGEIP N+  N+  L  + +S N  HG +PS
Sbjct: 534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL-GNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.0 bits (187), Expect = 1e-15
 Identities = 34/88 (38%), Positives = 51/88 (57%)

Query: 179 LGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAI 238
           LGL +    G +P +I  L  L+ + L GN ++G IP   G++  LE++ LS N   G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 239 PREWGNLTGLGILQLSDNFLTGITPSSI 266
           P   G LT L IL L+ N L+G  P+++
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.2 bits (159), Expect = 6e-12
 Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 137 LSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICN 196
           L G IP +I S L  L+ + LS N   G IP +L +   L+ L LS N F+G +P+ +  
Sbjct: 430 LRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488

Query: 197 LTKLKGLYLGGNRLQGEIP 215
           LT L+ L L GN L G +P
Sbjct: 489 LTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.3 bits (154), Expect = 2e-11
 Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 4/105 (3%)

Query: 43  WTGVTCDVHSHR----VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIF 98
           W+G  C   S +    +  L +    L G IP+ +  L  LQS+NLS N + G+IP ++ 
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463

Query: 99  TTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPA 143
           +  +L+ +    N  +G+ P      +SL+ L+   N+LSG +PA
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 56.2 bits (136), Expect = 5e-11
 Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 2/41 (4%)

Query: 10 TDRDALLALKAHITHDPTNFFAKNWNTSTPV-CNWTGVTCD 49
           DRDALLA K+ +  DP+   + +WN S+   C+WTGVTCD
Sbjct: 3  DDRDALLAFKSSLNGDPSGALS-SWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.1 bits (143), Expect = 7e-10
 Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 3/107 (2%)

Query: 151 FLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRL 210
           F++ L L      G IP+ +S   +LQ + LS N   G +P  + ++T L+ L L  N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 211 QGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNF 257
            G IP   G L  L +++L+ N L G +P     L G  + + S NF
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVP---AALGGRLLHRASFNF 522

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 3e-08
 Identities = 26/68 (38%), Positives = 38/68 (55%)

Query: 202 GLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGI 261
           GL L    L+G IP +   L  L+ ++LS N ++G IP   G++T L +L LS N   G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 262 TPSSIYKL 269
            P S+ +L
Sbjct: 482 IPESLGQL 489

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 6e-08
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 111 NQ-LSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSA 169
           NQ L G  P+       LQ ++   N++ G IP ++  ++  LE L LS N F+G IP +
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPES 485

Query: 170 LSNCAYLQRLGLSSNDFSGVVP 191
           L     L+ L L+ N  SG VP
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.7 bits (113), Expect = 3e-06
 Identities = 65/200 (32%), Positives = 96/200 (48%), Gaps = 8/200 (4%)

Query: 73  LGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF 132
           L  L++L SL+L  N ++   P        LK +    N++  + PS   N  +L+ LD 
Sbjct: 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL 170

Query: 133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPK 192
            FN LS ++P  + SNL  L  L LS N     +P  +   + L+ L LS+N     +  
Sbjct: 171 SFNDLS-DLPKLL-SNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLS 226

Query: 193 EICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQ 252
            + NL  L GL L  N+L+ ++P   GNL+ LE + LS N++        G+LT L  L 
Sbjct: 227 SLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELD 283

Query: 253 LSDNFLTGITPSSIYKLLFS 272
           LS N L+   P     LL  
Sbjct: 284 LSGNSLSNALPLIALLLLLL 303

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.1 bits (112), Expect = 6e-06
 Identities = 20/43 (46%), Positives = 31/43 (72%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAI 97
           + VL++S  +  G+IP  LG L+SL+ LNL+ N LSG +P+A+
Sbjct: 468 LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 103 LKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMF 162
           LK +    N+L+           +L+ LD   N L+  I     S LP L  L LS N  
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 126 SLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSND 185
           +L+ LD   N L+  IP      LP L+ L LS N      P A S    L+ L LS N+
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 186 F 186
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 54  RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQL 113
            +  L++S   LT         L +L+ L+LS N L+   P A     +L+ +    N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	279
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.91
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.9
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.83
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.78
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.77
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.74
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.73
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.73
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.72
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.69
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.67
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.66
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.66
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.65
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.63
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.63
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.61
PLN03150	623	hypothetical protein; Provisional	99.6
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.57
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.56
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.41
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.41
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.33
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.29
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.29
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.28
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.24
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.21
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.19
PLN03150	623	hypothetical protein; Provisional	99.13
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.08
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.04
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.02
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.94
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.93
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.82
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.71
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.7
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.68
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.65
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.65
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.64
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.5
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.48
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.47
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.3
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.23
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.22
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.2
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.16
PRK15386	426	type III secretion protein GogB; Provisional	98.12
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.12
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.1
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.05
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.04
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.04
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.94
PRK15386	426	type III secretion protein GogB; Provisional	97.77
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.75
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.67
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.31
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.09
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.64
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.6
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.19
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.75
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.48
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.29
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.93
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.73
smart00370	26	LRR Leucine-rich repeats, outliers.	93.38
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.38
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.18
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.91
KOG4308	478	consensus LRR-containing protein [Function unknown	92.9
smart00370	26	LRR Leucine-rich repeats, outliers.	92.44
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.44
KOG4308	478	consensus LRR-containing protein [Function unknown	91.81
KOG4341	483	consensus F-box protein containing LRR [General fu	88.48
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.37
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.56
KOG4341	483	consensus F-box protein containing LRR [General fu	87.43
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	81.17

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=8.6e-33  Score=263.39  Aligned_cols=257  Identities=41%  Similarity=0.701  Sum_probs=167.5

Q ss_pred             CChhHHHHHHHHHHhccCCCcccccCCCCCCCCCcceeeeeeCCCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccC
Q 041953            7 TITTDRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSC   86 (279)
Q Consensus         7 ~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~   86 (279)
                      ..++|..+|++||+.+. +|..+. .+|+...++|.|.|+.|.. ..+++.|+++++.+.+..+..|..+++|+.|++++
T Consensus        26 ~~~~~~~~l~~~~~~~~-~~~~~~-~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~  102 (968)
T PLN00113         26 LHAEELELLLSFKSSIN-DPLKYL-SNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSN  102 (968)
T ss_pred             CCHHHHHHHHHHHHhCC-CCcccC-CCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCC
Confidence            35689999999999986 777777 8998888999999999985 35899999999999888888999999999999999


Q ss_pred             CcccCCCCcccc-CCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeeccccccc
Q 041953           87 NRLSGSIPSAIF-TTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGG  165 (279)
Q Consensus        87 ~~i~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  165 (279)
                      |.+.+.+|..+. .+.+|++|++++|.+.+.+|.  ..+++|++|++++|.+.+.+|..+ .++++|++|++++|.+.+.
T Consensus       103 n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~  179 (968)
T PLN00113        103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGK  179 (968)
T ss_pred             CccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCccccc
Confidence            999877776654 778888888888877654443  234556666666665554444443 4555555555555555545


Q ss_pred             CCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCC
Q 041953          166 IPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNL  245 (279)
Q Consensus       166 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~  245 (279)
                      .|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++.+..|..+.++
T Consensus       180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  259 (968)
T PLN00113        180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL  259 (968)
T ss_pred             CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence            55555555555555555555554445445555555555555555444444444444555555555554444444444444


Q ss_pred             CCCCeEEccCCcccccCccccccc
Q 041953          246 TGLGILQLSDNFLTGITPSSIYKL  269 (279)
Q Consensus       246 ~~L~~L~l~~n~l~~~~~~~~~~~  269 (279)
                      ++|+.|++++|.+.+..|.++..+
T Consensus       260 ~~L~~L~L~~n~l~~~~p~~l~~l  283 (968)
T PLN00113        260 KNLQYLFLYQNKLSGPIPPSIFSL  283 (968)
T ss_pred             CCCCEEECcCCeeeccCchhHhhc
Confidence            444444444444444444444333

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=7.1e-27  Score=222.96  Aligned_cols=217  Identities=38%  Similarity=0.550  Sum_probs=126.7

Q ss_pred             CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953           52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD  131 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  131 (279)
                      .+++++|++++|.+.+..|..++++++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            34556666666666555666666666666666666666656666666666666666666666655666666666666666


Q ss_pred             eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc
Q 041953          132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ  211 (279)
Q Consensus       132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~  211 (279)
                      +++|.+.+.+|..+ .++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus       219 L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        219 LGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS  297 (968)
T ss_pred             CcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence            66666654455444 55666666666666655555555555556666666666555555555555555555555555555


Q ss_pred             cccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccc
Q 041953          212 GEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL  269 (279)
Q Consensus       212 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  269 (279)
                      +.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..++.+
T Consensus       298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~  355 (968)
T PLN00113        298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH  355 (968)
T ss_pred             cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC
Confidence            5555555555555555555555554555555555555555555555555444444443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.91  E-value=4.2e-25  Score=187.58  Aligned_cols=220  Identities=25%  Similarity=0.238  Sum_probs=189.4

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF  132 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  132 (279)
                      .+++.|+|.+|.|+.+....++.++.|+.||++.|.|+.....+|..-.++++|+|++|+|+......|..+.+|..|.+
T Consensus       125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL  204 (873)
T KOG4194|consen  125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL  204 (873)
T ss_pred             cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence            35788888888887777777888888888999988888555566777778999999999998777778888889999999


Q ss_pred             eccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccccc
Q 041953          133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQG  212 (279)
Q Consensus       133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~  212 (279)
                      +.|+++ .+|...|..+++|+.|++..|.+...--..|..+++|+.|.+..|.+.......|..+.++++|++..|+++.
T Consensus       205 srNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~  283 (873)
T KOG4194|consen  205 SRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA  283 (873)
T ss_pred             ccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence            999998 9999998899999999999998874334578888999999999999987777788889999999999999987


Q ss_pred             ccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccccccc
Q 041953          213 EIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSI  273 (279)
Q Consensus       213 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~  273 (279)
                      .-..++.++..|++|++++|.|..+.++++..+++|++|++++|.+++..+.+|..+..+.
T Consensus       284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le  344 (873)
T KOG4194|consen  284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE  344 (873)
T ss_pred             hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence            7788899999999999999999988899999999999999999999999998888776554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.90  E-value=2.2e-25  Score=189.32  Aligned_cols=222  Identities=23%  Similarity=0.244  Sum_probs=155.5

Q ss_pred             CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953           52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD  131 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  131 (279)
                      ...+..|.|+.|.++...+..|+++++|+.|++..|.|.....-.|.++++|+.|.+.+|.+.......|..+.++++|+
T Consensus       196 lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~  275 (873)
T KOG4194|consen  196 LNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN  275 (873)
T ss_pred             cchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceee
Confidence            33555555555555544455555556666666665555422233455555566666666665544556677788888888


Q ss_pred             eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccc-
Q 041953          132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRL-  210 (279)
Q Consensus       132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~-  210 (279)
                      +..|++. .+......++..|+.|+++.|.|....++.|..+++|++|++++|.++...+..|..+..|++|+++.|++ 
T Consensus       276 L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~  354 (873)
T KOG4194|consen  276 LETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID  354 (873)
T ss_pred             cccchhh-hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH
Confidence            8888887 55555556788888888888888878888888888999999999888866665555555555555555544 


Q ss_pred             -----------------------cccc---CccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcc
Q 041953          211 -----------------------QGEI---PRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPS  264 (279)
Q Consensus       211 -----------------------~~~~---~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  264 (279)
                                             ...+   ...|.++++|+.|++.+|++..+...+|.+++.|+.|++.+|++.++-|.
T Consensus       355 ~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n  434 (873)
T KOG4194|consen  355 HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPN  434 (873)
T ss_pred             HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccc
Confidence                                   3222   23466788899999999999866667899999999999999999999999


Q ss_pred             ccccccccccc
Q 041953          265 SIYKLLFSIKF  275 (279)
Q Consensus       265 ~~~~~~~~~~~  275 (279)
                      +|..+ .++++
T Consensus       435 AFe~m-~Lk~L  444 (873)
T KOG4194|consen  435 AFEPM-ELKEL  444 (873)
T ss_pred             ccccc-hhhhh
Confidence            98887 55543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.83  E-value=8e-23  Score=175.48  Aligned_cols=217  Identities=27%  Similarity=0.405  Sum_probs=149.6

Q ss_pred             CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCccc-CCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEE
Q 041953           52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLS-GSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYL  130 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  130 (279)
                      +.+++.|.+++|++. .+-+.++.++.|+.+.++.|.+. .-+|..+..+..|+.|++++|++. ..|..+..-.++-.|
T Consensus        54 lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVL  131 (1255)
T KOG0444|consen   54 LQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVL  131 (1255)
T ss_pred             HhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEE
Confidence            456777777777766 34555667777777777777665 236667777778888888888877 667777777778888


Q ss_pred             EeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCccc-----------------------
Q 041953          131 DFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFS-----------------------  187 (279)
Q Consensus       131 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-----------------------  187 (279)
                      ++++|++. .+|..+|.++.-|-.|++++|.+. .+|..++++..|++|.+++|.+.                       
T Consensus       132 NLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR  209 (1255)
T KOG0444|consen  132 NLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR  209 (1255)
T ss_pred             EcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence            88888886 788777777777777777777776 56666666666666666666532                       


Q ss_pred             --ccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccc
Q 041953          188 --GVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSS  265 (279)
Q Consensus       188 --~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  265 (279)
                        ..+|.++..+.+|..++++.|.+. .+|..+..+++|+.|+||+|+|+ .+....+...+|++|+++.|.++.. |.+
T Consensus       210 Tl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~L-P~a  286 (1255)
T KOG0444|consen  210 TLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVL-PDA  286 (1255)
T ss_pred             hhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccc-hHH
Confidence              124555555666667777777765 66777777777777777777776 4444455556677777777777665 566


Q ss_pred             cccccccccc
Q 041953          266 IYKLLFSIKF  275 (279)
Q Consensus       266 ~~~~~~~~~~  275 (279)
                      ++.++.+.|+
T Consensus       287 vcKL~kL~kL  296 (1255)
T KOG0444|consen  287 VCKLTKLTKL  296 (1255)
T ss_pred             HhhhHHHHHH
Confidence            6666665543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.78  E-value=7.8e-21  Score=154.81  Aligned_cols=219  Identities=24%  Similarity=0.286  Sum_probs=146.7

Q ss_pred             CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEccc-CcccccCCccCCCCCCCcEE
Q 041953           52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRK-NQLSGAFPSFAFNTSSLQYL  130 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L  130 (279)
                      +...+.|+|..|+|+.+.+.+|+.+++|+.|+++.|.|+.+.|++|.++.+|..|.+.+ |+|+..-...|..+.+++.|
T Consensus        66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999988887777 88884434456666666666


Q ss_pred             EeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcc------------------------
Q 041953          131 DFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDF------------------------  186 (279)
Q Consensus       131 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~------------------------  186 (279)
                      .+.-|++. .+....|..++.+..|.+..|.+.......+..+..++.+.+..|.+                        
T Consensus       146 llNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  146 LLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             hcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence            66666665 55555555555555555555544311111233333333332222220                        


Q ss_pred             -------------------------------------cccCC-cccCCCCCccEEEccCcccccccCccCCCCCCCCEEe
Q 041953          187 -------------------------------------SGVVP-KEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMS  228 (279)
Q Consensus       187 -------------------------------------~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  228 (279)
                                                           ....| ..|+.+++|+++++++|.++.+-+.+|.+...++.|.
T Consensus       225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~  304 (498)
T KOG4237|consen  225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY  304 (498)
T ss_pred             ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence                                                 00111 2355666777777777777766666777777777777


Q ss_pred             ccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccccc
Q 041953          229 LSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLF  271 (279)
Q Consensus       229 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  271 (279)
                      |..|++.......|.++..|+.|++.+|+|+...|.+|..+.+
T Consensus       305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~  347 (498)
T KOG4237|consen  305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS  347 (498)
T ss_pred             cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence            7777776555556777777777777777777777766665533

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.77  E-value=6e-21  Score=164.06  Aligned_cols=216  Identities=26%  Similarity=0.386  Sum_probs=120.9

Q ss_pred             CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCc-cccCCCCCcEEEcccCcccccCCccCCCCCCCcEE
Q 041953           52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPS-AIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYL  130 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  130 (279)
                      +..++.|||++|++. ..|..+...+++-.|++++|.|. .+|. .|-++.-|-+|++++|++. .+|+.+..+..|++|
T Consensus       102 l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL  178 (1255)
T KOG0444|consen  102 LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTL  178 (1255)
T ss_pred             cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhh
Confidence            446777777777776 56666666677777777777776 4454 3345666777777777776 666666677777777


Q ss_pred             Eeecccccc-------------------------ccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCc
Q 041953          131 DFGFNTLSG-------------------------EIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSND  185 (279)
Q Consensus       131 ~l~~n~~~~-------------------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  185 (279)
                      .+++|++.-                         .+|..+ ..+.+|..++++.|.+. ..|+++..+++|+.|++++|.
T Consensus       179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl-d~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~  256 (1255)
T KOG0444|consen  179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL-DDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNK  256 (1255)
T ss_pred             hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch-hhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCc
Confidence            777776531                         122222 23344444444444444 444444444455555555554


Q ss_pred             ccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcc-cCCccccCCCCCCeEEccCCcccccCcc
Q 041953          186 FSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQG-AIPREWGNLTGLGILQLSDNFLTGITPS  264 (279)
Q Consensus       186 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~  264 (279)
                      ++ ...-....+.+|++|+++.|.++ .+|+.+..+++|+.|.+.+|++.- -+|..++++..|+++...+|.+. ..|+
T Consensus       257 it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPE  333 (1255)
T KOG0444|consen  257 IT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPE  333 (1255)
T ss_pred             ee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCch
Confidence            44 22222333444555555555544 455555555555555555555431 23445555555565655555543 3366


Q ss_pred             ccccccccccc
Q 041953          265 SIYKLLFSIKF  275 (279)
Q Consensus       265 ~~~~~~~~~~~  275 (279)
                      .++.|..++|+
T Consensus       334 glcRC~kL~kL  344 (1255)
T KOG0444|consen  334 GLCRCVKLQKL  344 (1255)
T ss_pred             hhhhhHHHHHh
Confidence            77777666554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.74  E-value=2.8e-20  Score=135.68  Aligned_cols=185  Identities=28%  Similarity=0.487  Sum_probs=148.5

Q ss_pred             CCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcE
Q 041953           75 NLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEY  154 (279)
Q Consensus        75 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  154 (279)
                      ++.+++.|.+++|+++ ..|..+..+.+|+.|++.+|++. .+|..+..+++|+.|+++.|++. .+|..+ +.++.|+.
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf-gs~p~lev  106 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF-GSFPALEV  106 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc-CCCchhhh
Confidence            5678888999999998 77778888999999999999988 77888889999999999999886 777666 88999999


Q ss_pred             EEeecccccc-cCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCc
Q 041953          155 LALSQNMFHG-GIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENE  233 (279)
Q Consensus       155 L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  233 (279)
                      ||+.+|.+.. .+|..|-.+..|+.|.+++|.+. ..|...+.+++|+.|.+.+|.+. .+|..++.+..|+.|++.+|.
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence            9998887753 57777778888889999999887 67777888899999999998876 788888888999999999999


Q ss_pred             CcccCCccccCCC---CCCeEEccCCcccccCcccc
Q 041953          234 LQGAIPREWGNLT---GLGILQLSDNFLTGITPSSI  266 (279)
Q Consensus       234 i~~~~~~~~~~~~---~L~~L~l~~n~l~~~~~~~~  266 (279)
                      ++ .+|..++.+.   +=+.+.+..|+....+.++|
T Consensus       185 l~-vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf  219 (264)
T KOG0617|consen  185 LT-VLPPELANLDLVGNKQVMRMEENPWVNPIAEQF  219 (264)
T ss_pred             ee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHHHH
Confidence            87 4554555432   33456667777655555443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.73  E-value=3.4e-20  Score=151.16  Aligned_cols=208  Identities=24%  Similarity=0.266  Sum_probs=171.7

Q ss_pred             CCCeEEEEEcCCCCccccCcccccCCCCCCEEEccC-CcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcE
Q 041953           51 HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSC-NRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQY  129 (279)
Q Consensus        51 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  129 (279)
                      ..++|+.|+|++|+|+.+-|++|..++.|.+|-+.+ |+|.+.-.+.|.++..|+.|.+.-|++.-.....+..++++..
T Consensus        89 ~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~l  168 (498)
T KOG4237|consen   89 TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSL  168 (498)
T ss_pred             chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcch
Confidence            467999999999999999999999999998888877 8998666678888888888888888777555667777888888


Q ss_pred             EEeeccccccccChhhhcCCCCCcEEEeeccc------------------------------------------------
Q 041953          130 LDFGFNTLSGEIPANICSNLPFLEYLALSQNM------------------------------------------------  161 (279)
Q Consensus       130 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~------------------------------------------------  161 (279)
                      |.+..|.+. .++...|..+..++.+.+..|.                                                
T Consensus       169 LslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~  247 (498)
T KOG4237|consen  169 LSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS  247 (498)
T ss_pred             hcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh
Confidence            888888776 6666555666666655554442                                                


Q ss_pred             -------------ccccCC-ccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEE
Q 041953          162 -------------FHGGIP-SALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELM  227 (279)
Q Consensus       162 -------------l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  227 (279)
                                   ..+..| ..|..+++|++|++++|++++.-+.+|..+..+++|++..|++..+....|.++..|+.|
T Consensus       248 ~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL  327 (498)
T KOG4237|consen  248 LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTL  327 (498)
T ss_pred             HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceee
Confidence                         001111 246778899999999999999999999999999999999999987777889999999999


Q ss_pred             eccCCcCcccCCccccCCCCCCeEEccCCccc
Q 041953          228 SLSENELQGAIPREWGNLTGLGILQLSDNFLT  259 (279)
Q Consensus       228 ~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~  259 (279)
                      +|.+|+|+...|.+|..+..|.+|.+-.|++.
T Consensus       328 ~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  328 SLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             eecCCeeEEEecccccccceeeeeehccCccc
Confidence            99999999899999999999999999999874

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.73  E-value=1.6e-20  Score=137.00  Aligned_cols=163  Identities=33%  Similarity=0.505  Sum_probs=130.9

Q ss_pred             CCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEE
Q 041953           51 HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYL  130 (279)
Q Consensus        51 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  130 (279)
                      ..+.++.|.+++|.++ ..|+.++.+.+|+.|++.+|++. ..|..+..+++|+.|++.-|++. ..|..|+.++.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            3457788888888887 66777888888888888888887 78888888888888888888877 778888888888888


Q ss_pred             Eeecccccc-ccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcc
Q 041953          131 DFGFNTLSG-EIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNR  209 (279)
Q Consensus       131 ~l~~n~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~  209 (279)
                      ++.+|.+.. .+|..+| .+..|+.|+++.|.+. .+|..++.+++|+.|.+..|.+. ..|..++.+.+|++|.+++|+
T Consensus       108 dltynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hccccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence            888887763 4555553 4777888888888887 77878888888888888888877 678888888888888888888


Q ss_pred             cccccCccCCC
Q 041953          210 LQGEIPRESGN  220 (279)
Q Consensus       210 ~~~~~~~~~~~  220 (279)
                      ++ .+|..++.
T Consensus       185 l~-vlppel~~  194 (264)
T KOG0617|consen  185 LT-VLPPELAN  194 (264)
T ss_pred             ee-ecChhhhh
Confidence            87 66655544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.73  E-value=9.2e-21  Score=154.85  Aligned_cols=212  Identities=30%  Similarity=0.421  Sum_probs=130.1

Q ss_pred             CCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcE-
Q 041953           51 HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQY-  129 (279)
Q Consensus        51 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~-  129 (279)
                      ...-++++.+.+|.+. ..|.+++.+..++.++.+.|++. .+|.....+.+|..++.++|.+. ..++.++.+..+.. 
T Consensus        66 nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl  142 (565)
T KOG0472|consen   66 NLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDL  142 (565)
T ss_pred             cccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhh
Confidence            3445778888888776 45666666666666666666666 56666666666666666666554 33444444444444 


Q ss_pred             ----------------------EEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCccc
Q 041953          130 ----------------------LDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFS  187 (279)
Q Consensus       130 ----------------------L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  187 (279)
                                            +++.+|.+. .+|+... .++.|+++++..|.+. .+|..++.+.+|..|++..|++.
T Consensus       143 ~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~  219 (565)
T KOG0472|consen  143 DATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR  219 (565)
T ss_pred             hccccccccCchHHHHHHHHHHhhccccchh-hCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc
Confidence                                  444444443 3444332 2566666666666655 66666666667777777777666


Q ss_pred             ccCCcccCCCCCccEEEccCcccccccCcc-CCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccc
Q 041953          188 GVVPKEICNLTKLKGLYLGGNRLQGEIPRE-SGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSI  266 (279)
Q Consensus       188 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  266 (279)
                       ..| .|.++..|.++++..|.+. .+|.. ..+++++..||+.+|+++ ..|..+.-+.+|..||+++|.+++. |.++
T Consensus       220 -~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~L-p~sL  294 (565)
T KOG0472|consen  220 -FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSL-PYSL  294 (565)
T ss_pred             -cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccC-Cccc
Confidence             344 5566666666666666665 34433 336677777777777776 6666666677777777777777776 4466


Q ss_pred             cccccccc
Q 041953          267 YKLLFSIK  274 (279)
Q Consensus       267 ~~~~~~~~  274 (279)
                      +++ ++++
T Consensus       295 gnl-hL~~  301 (565)
T KOG0472|consen  295 GNL-HLKF  301 (565)
T ss_pred             ccc-eeee
Confidence            666 4443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.72  E-value=1.3e-20  Score=153.95  Aligned_cols=199  Identities=31%  Similarity=0.488  Sum_probs=159.3

Q ss_pred             eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEee
Q 041953           54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFG  133 (279)
Q Consensus        54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  133 (279)
                      +++.++.+.|.+. ..++.++.+..++.++..+|.+. ..|..+..+.+|..+++.+|++. ..|+..-.+..|++++..
T Consensus       115 ~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~  191 (565)
T KOG0472|consen  115 SLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCN  191 (565)
T ss_pred             hhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccc
Confidence            4445555555554 34455555556666666666665 55666666666777777777766 445554458899999999


Q ss_pred             ccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcc-cCCCCCccEEEccCccccc
Q 041953          134 FNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKE-ICNLTKLKGLYLGGNRLQG  212 (279)
Q Consensus       134 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-l~~~~~L~~L~l~~n~~~~  212 (279)
                      .|.+. .+|+.. +.+.+|+-|++..|++. .+| .|..|..|+++.++.|.+. ..|.. .++++++.+|++.+|++. 
T Consensus       192 ~N~L~-tlP~~l-g~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-  265 (565)
T KOG0472|consen  192 SNLLE-TLPPEL-GGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-  265 (565)
T ss_pred             hhhhh-cCChhh-cchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-
Confidence            99997 999998 89999999999999998 777 8999999999999999998 45544 558999999999999998 


Q ss_pred             ccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCc
Q 041953          213 EIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITP  263 (279)
Q Consensus       213 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  263 (279)
                      ..|+.+.-+.+|++||+++|.|+ .+|.+++++ .|++|-+.+|++..+-.
T Consensus       266 e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr  314 (565)
T KOG0472|consen  266 EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRR  314 (565)
T ss_pred             cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHH
Confidence            88999999999999999999998 778889999 99999999999987644

>PLN03210 Resistant to P

Probab=99.69  E-value=6.7e-16  Score=149.09  Aligned_cols=94  Identities=23%  Similarity=0.221  Sum_probs=51.6

Q ss_pred             cCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccC--------------------CCCCCCCEEeccCCcC
Q 041953          175 YLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES--------------------GNLAELELMSLSENEL  234 (279)
Q Consensus       175 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~--------------------~~~~~L~~L~l~~n~i  234 (279)
                      +|+.|++++|......|..++++++|+.|++++|.....+|..+                    ....+|+.|++++|.+
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i  858 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI  858 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCC
Confidence            44555555554444455555555566666665553222333222                    1124566666666666


Q ss_pred             cccCCccccCCCCCCeEEccCC-cccccCcccccccc
Q 041953          235 QGAIPREWGNLTGLGILQLSDN-FLTGITPSSIYKLL  270 (279)
Q Consensus       235 ~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~  270 (279)
                      + .+|..+..+++|+.|++++| .+.+ +|..+..++
T Consensus       859 ~-~iP~si~~l~~L~~L~L~~C~~L~~-l~~~~~~L~  893 (1153)
T PLN03210        859 E-EVPWWIEKFSNLSFLDMNGCNNLQR-VSLNISKLK  893 (1153)
T ss_pred             c-cChHHHhcCCCCCEEECCCCCCcCc-cCccccccc
Confidence            5 56667777888888888875 4444 344444443

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.67  E-value=2.5e-15  Score=137.23  Aligned_cols=187  Identities=27%  Similarity=0.405  Sum_probs=118.1

Q ss_pred             eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEee
Q 041953           54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFG  133 (279)
Q Consensus        54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  133 (279)
                      +.+.|+++++.++ .+|..+.  +.|+.|++++|.++ .+|..+.  .+|++|++++|++. .+|..+.  .+|+.|+++
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence            4567777777776 3555443  46788888888877 5555443  47888888887776 4454432  357777777


Q ss_pred             ccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccC------------------
Q 041953          134 FNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEIC------------------  195 (279)
Q Consensus       134 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~------------------  195 (279)
                      +|.+. .+|..+.   .+|+.|++++|.+. .+|..+.  ++|+.|++++|.+.. +|..+.                  
T Consensus       250 ~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~  321 (754)
T PRK15370        250 INRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPE  321 (754)
T ss_pred             CCccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCc
Confidence            77766 6665542   35677777777666 4454443  356666666666552 222111                  


Q ss_pred             -CCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCc
Q 041953          196 -NLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITP  263 (279)
Q Consensus       196 -~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  263 (279)
                       -.++|+.|++++|.++ .+|..+.  ++|+.|++++|++. .+|..+.  ++|+.|++++|.++++++
T Consensus       322 ~l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP~  384 (754)
T PRK15370        322 TLPPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLPE  384 (754)
T ss_pred             cccccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCCCH
Confidence             1235677777777766 3454443  67888888888886 4565443  578888888888887644

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.66  E-value=4.5e-16  Score=142.13  Aligned_cols=191  Identities=26%  Similarity=0.418  Sum_probs=123.9

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF  132 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  132 (279)
                      +.++.|++++|.++ .+|..+.  .+|++|++++|.+. .+|..+.  ++|+.|++++|.+. .+|..+.  .+|+.|++
T Consensus       199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L  269 (754)
T PRK15370        199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL  269 (754)
T ss_pred             cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence            35778888888887 3454443  47777888777776 4554332  35666666666665 4444332  35566666


Q ss_pred             eccccccccChhhhcCCCCCcEEEeecccccc--------------------cCCccCCCCccCcEEeccCCcccccCCc
Q 041953          133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHG--------------------GIPSALSNCAYLQRLGLSSNDFSGVVPK  192 (279)
Q Consensus       133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--------------------~~~~~l~~l~~L~~L~l~~n~~~~~~~~  192 (279)
                      ++|++. .+|..+   .++|+.|++++|.++.                    .+|..+  .++|+.|++++|.++. +|.
T Consensus       270 s~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~-LP~  342 (754)
T PRK15370        270 FHNKIS-CLPENL---PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTS-LPA  342 (754)
T ss_pred             cCCccC-cccccc---CCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc--cccceeccccCCcccc-CCh
Confidence            666554 444433   1345555555555442                    222222  2468888888888874 555


Q ss_pred             ccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccc
Q 041953          193 EICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYK  268 (279)
Q Consensus       193 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  268 (279)
                      .+.  ++|+.|++++|.++ .+|..+.  ++|+.|+|++|+++ .+|..+.  ..|+.|++++|.+.+. |.++..
T Consensus       343 ~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~L-P~sl~~  409 (754)
T PRK15370        343 SLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRL-PESLPH  409 (754)
T ss_pred             hhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccC-chhHHH
Confidence            443  68999999999997 5666553  68999999999998 5565554  3799999999999865 544433

>PLN03210 Resistant to P

Probab=99.66  E-value=4.3e-15  Score=143.57  Aligned_cols=194  Identities=21%  Similarity=0.234  Sum_probs=102.7

Q ss_pred             eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEee
Q 041953           54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFG  133 (279)
Q Consensus        54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  133 (279)
                      +|+.|+++++.+. .++..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|+++
T Consensus       612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~  689 (1153)
T PLN03210        612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS  689 (1153)
T ss_pred             CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence            4555555555554 3444455555566666655433223332 4455566666666554444555555566666666666


Q ss_pred             ccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCccc-------------------
Q 041953          134 FNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEI-------------------  194 (279)
Q Consensus       134 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-------------------  194 (279)
                      +|.....+|...  ++++|+.|++++|.....+|..   ..+|+.|++++|.+. .+|..+                   
T Consensus       690 ~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~  763 (1153)
T PLN03210        690 RCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLW  763 (1153)
T ss_pred             CCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhcc
Confidence            554333455433  4556666666655433233321   234566666666554 223211                   


Q ss_pred             -----------CCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCC
Q 041953          195 -----------CNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDN  256 (279)
Q Consensus       195 -----------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n  256 (279)
                                 ...++|+.|++++|.....+|..++.+++|+.|+|++|...+.+|... .+++|+.|++++|
T Consensus       764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c  835 (1153)
T PLN03210        764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGC  835 (1153)
T ss_pred             ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC
Confidence                       012356677777776555677777777888888887764333444432 3444444444443

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.65  E-value=4e-18  Score=152.13  Aligned_cols=200  Identities=31%  Similarity=0.416  Sum_probs=115.5

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF  132 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  132 (279)
                      ..+++++++.+.+. .+|.-+..+.+|+.+....|.+. ..|..+....+|+.|...+|.+. .+|.....+..|++|++
T Consensus       241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence            45666666666666 34566666667777777766664 55555555566666666666665 55677777888888888


Q ss_pred             eccccccccChhhhc-------------------------CCCCCcEEEeecccccccCCccCCCCccCcEEeccCCccc
Q 041953          133 GFNTLSGEIPANICS-------------------------NLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFS  187 (279)
Q Consensus       133 ~~n~~~~~~~~~~~~-------------------------~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  187 (279)
                      ..|++. .+|...+.                         .++.|+.|++.+|.+++..-..+...++|+.|+|++|.+.
T Consensus       318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~  396 (1081)
T KOG0618|consen  318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN  396 (1081)
T ss_pred             hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence            888775 55553321                         1233555555555555544445555566666666666655


Q ss_pred             ccCCcccCCCCCccEEEccCcccccccCc----------------------cCCCCCCCCEEeccCCcCccc-CCccccC
Q 041953          188 GVVPKEICNLTKLKGLYLGGNRLQGEIPR----------------------ESGNLAELELMSLSENELQGA-IPREWGN  244 (279)
Q Consensus       188 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~----------------------~~~~~~~L~~L~l~~n~i~~~-~~~~~~~  244 (279)
                      ......+.++..|++|++++|.++ .+|+                      .+..++.|+.+|++.|+++.. +|+... 
T Consensus       397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p-  474 (1081)
T KOG0618|consen  397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALP-  474 (1081)
T ss_pred             cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCC-
Confidence            222233455556666666666554 3333                      445556666666666665432 222222 


Q ss_pred             CCCCCeEEccCCcc
Q 041953          245 LTGLGILQLSDNFL  258 (279)
Q Consensus       245 ~~~L~~L~l~~n~l  258 (279)
                      .++|++||+++|.-
T Consensus       475 ~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  475 SPNLKYLDLSGNTR  488 (1081)
T ss_pred             CcccceeeccCCcc
Confidence            25666666666653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.63  E-value=1.2e-15  Score=138.75  Aligned_cols=194  Identities=27%  Similarity=0.331  Sum_probs=124.2

Q ss_pred             CCeEEEEEcCCCCccccCcccccCC-----------------CCCCEEEccCCcccCCCCccccCCCCCcEEEcccCccc
Q 041953           52 SHRVTVLNISRLNLTGTIPSQLGNL-----------------SSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS  114 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~~~l-----------------~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~  114 (279)
                      .+.|++|++++|.++. +|..+.++                 ..|+.|++++|++. .+|.   .+++|+.|++++|++.
T Consensus       241 p~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~  315 (788)
T PRK15387        241 PPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA  315 (788)
T ss_pred             CCCCcEEEecCCccCc-ccCcccccceeeccCCchhhhhhchhhcCEEECcCCccc-cccc---cccccceeECCCCccc
Confidence            5788888888888874 34322111                 23555666666665 3343   2467888888888877


Q ss_pred             ccCCccCCC-------------C----CCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCc
Q 041953          115 GAFPSFAFN-------------T----SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQ  177 (279)
Q Consensus       115 ~~~~~~~~~-------------l----~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~  177 (279)
                      . +|.....             +    .+|++|++++|++. .+|..    ..+|+.|++++|.+. .+|..   ..+|+
T Consensus       316 ~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~-~LP~l---~~~L~  385 (788)
T PRK15387        316 S-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLT-SLPAL---PSGLK  385 (788)
T ss_pred             c-CCCCcccccccccccCccccccccccccceEecCCCccC-CCCCC----Ccccceehhhccccc-cCccc---ccccc
Confidence            3 3331110             0    24555555555554 34321    234455555555554 33322   23577


Q ss_pred             EEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCc
Q 041953          178 RLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNF  257 (279)
Q Consensus       178 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~  257 (279)
                      .|++++|.+.. .|..   .++|+.|++++|.++ .+|..   ..+|+.|++++|+++ .+|..+.+++.|+.|++++|+
T Consensus       386 ~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        386 ELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             eEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCC
Confidence            88888887773 4432   256888888888887 45543   246888999999998 778889999999999999999


Q ss_pred             ccccCccccccc
Q 041953          258 LTGITPSSIYKL  269 (279)
Q Consensus       258 l~~~~~~~~~~~  269 (279)
                      +++..+.++..+
T Consensus       457 Ls~~~~~~L~~l  468 (788)
T PRK15387        457 LSERTLQALREI  468 (788)
T ss_pred             CCchHHHHHHHH
Confidence            999888777444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.63  E-value=1.8e-17  Score=139.28  Aligned_cols=214  Identities=21%  Similarity=0.179  Sum_probs=139.8

Q ss_pred             CeEEEEEcCCCCccc------cCcccccCCCCCCEEEccCCcccCCCCccccCCCC---CcEEEcccCcccc----cCCc
Q 041953           53 HRVTVLNISRLNLTG------TIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT---LKYVSFRKNQLSG----AFPS  119 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~---L~~L~l~~n~~~~----~~~~  119 (279)
                      +.++.++++++.+.+      .++..+..+++|+.|++++|.+.+..+..+..+.+   |++|++++|.+..    .+..
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~  130 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK  130 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence            457788887776651      23445667788888888888876545555554544   8888888887762    1223


Q ss_pred             cCCCC-CCCcEEEeeccccccccCh---hhhcCCCCCcEEEeeccccccc----CCccCCCCccCcEEeccCCccccc--
Q 041953          120 FAFNT-SSLQYLDFGFNTLSGEIPA---NICSNLPFLEYLALSQNMFHGG----IPSALSNCAYLQRLGLSSNDFSGV--  189 (279)
Q Consensus       120 ~~~~l-~~L~~L~l~~n~~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~--  189 (279)
                      .+..+ ++|++|++++|.+.+....   ..+..+++|++|++++|.+.+.    ++..+...++|+.|++++|.+.+.  
T Consensus       131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  210 (319)
T cd00116         131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA  210 (319)
T ss_pred             HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence            34455 7888888888887632211   2235667888888888877632    223344556888888888877533  


Q ss_pred             --CCcccCCCCCccEEEccCcccccccCccC-----CCCCCCCEEeccCCcCcc----cCCccccCCCCCCeEEccCCcc
Q 041953          190 --VPKEICNLTKLKGLYLGGNRLQGEIPRES-----GNLAELELMSLSENELQG----AIPREWGNLTGLGILQLSDNFL  258 (279)
Q Consensus       190 --~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~i~~----~~~~~~~~~~~L~~L~l~~n~l  258 (279)
                        ....+..+++|+.|++++|.+++.....+     ...+.|++|++++|.+++    .+...+..+++|+.+++++|.+
T Consensus       211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l  290 (319)
T cd00116         211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF  290 (319)
T ss_pred             HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence              23345567788888888888764222111     124688888888888762    2234456668888888888888


Q ss_pred             cccCcccc
Q 041953          259 TGITPSSI  266 (279)
Q Consensus       259 ~~~~~~~~  266 (279)
                      +......+
T Consensus       291 ~~~~~~~~  298 (319)
T cd00116         291 GEEGAQLL  298 (319)
T ss_pred             cHHHHHHH
Confidence            87654333

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.61  E-value=3.2e-17  Score=137.77  Aligned_cols=208  Identities=19%  Similarity=0.192  Sum_probs=153.0

Q ss_pred             CCCeEEEEEcCCCCccccCcccccCCCC---CCEEEccCCcccCC----CCccccCC-CCCcEEEcccCccccc----CC
Q 041953           51 HSHRVTVLNISRLNLTGTIPSQLGNLSS---LQSLNLSCNRLSGS----IPSAIFTT-YTLKYVSFRKNQLSGA----FP  118 (279)
Q Consensus        51 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~---L~~L~l~~~~i~~~----~~~~~~~~-~~L~~L~l~~n~~~~~----~~  118 (279)
                      ..++++.|++++|.+.+..+..+..+..   |++|++++|.+.+.    +...+..+ ++|+.|++++|.+.+.    +.
T Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~  158 (319)
T cd00116          79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA  158 (319)
T ss_pred             hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence            3569999999999997656666655555   99999999988732    33345566 8999999999998732    23


Q ss_pred             ccCCCCCCCcEEEeeccccccccChhh---hcCCCCCcEEEeeccccccc----CCccCCCCccCcEEeccCCcccccCC
Q 041953          119 SFAFNTSSLQYLDFGFNTLSGEIPANI---CSNLPFLEYLALSQNMFHGG----IPSALSNCAYLQRLGLSSNDFSGVVP  191 (279)
Q Consensus       119 ~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~  191 (279)
                      ..+..+++|++|++++|.+.+.....+   +...++|++|++++|.+.+.    +...+..+++|++|++++|.+.+...
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~  238 (319)
T cd00116         159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA  238 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence            446677899999999998874222221   24567999999999987632    33456778899999999999875322


Q ss_pred             cccC-----CCCCccEEEccCccccc----ccCccCCCCCCCCEEeccCCcCccc----CCccccCC-CCCCeEEccCCc
Q 041953          192 KEIC-----NLTKLKGLYLGGNRLQG----EIPRESGNLAELELMSLSENELQGA----IPREWGNL-TGLGILQLSDNF  257 (279)
Q Consensus       192 ~~l~-----~~~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~i~~~----~~~~~~~~-~~L~~L~l~~n~  257 (279)
                      ..+.     ..+.|+.|++++|.++.    .+...+..+++|+.+++++|.+.+.    ....+... +.++.+++.+|+
T Consensus       239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            2221     24789999999999862    2334556668999999999999854    33444555 789999999887


Q ss_pred             c
Q 041953          258 L  258 (279)
Q Consensus       258 l  258 (279)
                      +
T Consensus       319 ~  319 (319)
T cd00116         319 F  319 (319)
T ss_pred             C
Confidence            4

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03150 hypothetical protein; Provisional

Probab=99.60  E-value=1.2e-14  Score=131.90  Aligned_cols=153  Identities=28%  Similarity=0.491  Sum_probs=128.6

Q ss_pred             CCCCChhHHHHHHHHHHhccCCCcccccCCCCCCCCCc-----ceeeeeeCCC----CCeEEEEEcCCCCccccCccccc
Q 041953            4 NTSTITTDRDALLALKAHITHDPTNFFAKNWNTSTPVC-----NWTGVTCDVH----SHRVTVLNISRLNLTGTIPSQLG   74 (279)
Q Consensus         4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c-----~~~~~~~~~~----~~~l~~L~l~~~~l~~~~~~~~~   74 (279)
                      ...+..+|..+|+.+|..+. ++..   .+|..  +.|     .|.|+.|...    ...++.|+|+++.+.+.+|..+.
T Consensus       366 ~~~t~~~~~~aL~~~k~~~~-~~~~---~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~  439 (623)
T PLN03150        366 ESKTLLEEVSALQTLKSSLG-LPLR---FGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDIS  439 (623)
T ss_pred             ccccCchHHHHHHHHHHhcC-Cccc---CCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHh
Confidence            34567789999999999985 4321   36753  344     6999999522    23599999999999999999999


Q ss_pred             CCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcE
Q 041953           75 NLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEY  154 (279)
Q Consensus        75 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  154 (279)
                      .+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+.....++..
T Consensus       440 ~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~  519 (623)
T PLN03150        440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRAS  519 (623)
T ss_pred             CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCce
Confidence            99999999999999999999999999999999999999999999999999999999999999998999877444456778


Q ss_pred             EEeecccc
Q 041953          155 LALSQNMF  162 (279)
Q Consensus       155 L~l~~n~l  162 (279)
                      +++.+|..
T Consensus       520 l~~~~N~~  527 (623)
T PLN03150        520 FNFTDNAG  527 (623)
T ss_pred             EEecCCcc
Confidence            88887753

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.57  E-value=6.6e-17  Score=144.51  Aligned_cols=183  Identities=28%  Similarity=0.359  Sum_probs=140.3

Q ss_pred             CcccccCCCCCCEEEccCCcccCCCCccccC--------------------------CCCCcEEEcccCcccccCCccCC
Q 041953           69 IPSQLGNLSSLQSLNLSCNRLSGSIPSAIFT--------------------------TYTLKYVSFRKNQLSGAFPSFAF  122 (279)
Q Consensus        69 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~--------------------------~~~L~~L~l~~n~~~~~~~~~~~  122 (279)
                      +|+....++.|++|++..|.+. ..|+.+..                          ++.|+.|.+.+|.++....+.+.
T Consensus       302 ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~  380 (1081)
T KOG0618|consen  302 IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV  380 (1081)
T ss_pred             CCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc
Confidence            4455556778888888888876 44443322                          12255556666666666666777


Q ss_pred             CCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccE
Q 041953          123 NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKG  202 (279)
Q Consensus       123 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~  202 (279)
                      .+.+|+.|+|++|++. .+|...+.++..|++|++++|+++ .+|+.+..+..|++|...+|.+. .+| .+..+++|+.
T Consensus       381 ~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~  456 (1081)
T KOG0618|consen  381 NFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV  456 (1081)
T ss_pred             cccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence            8899999999999997 899999899999999999999998 88889999999999999999887 677 6788999999


Q ss_pred             EEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCC
Q 041953          203 LYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDN  256 (279)
Q Consensus       203 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n  256 (279)
                      +|++.|.++...-......++|++||+++|.-....-..|..++.+..+++.-|
T Consensus       457 lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  457 LDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             EecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            999999987543333333489999999999743244456777777777777766

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.56  E-value=2.8e-14  Score=130.07  Aligned_cols=192  Identities=31%  Similarity=0.370  Sum_probs=95.2

Q ss_pred             eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCC-----------
Q 041953           54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAF-----------  122 (279)
Q Consensus        54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-----------  122 (279)
                      .++.|++.+|+++. +|.   ..++|++|++++|+++ .+|..   .++|+.|++++|.+. .+|..+.           
T Consensus       223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~lp~~L~~L~Ls~N~  293 (788)
T PRK15387        223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPALPSGLCKLWIFGNQ  293 (788)
T ss_pred             CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhchhhcCEEECcCCc
Confidence            57788888888873 443   2467888888888887 44432   345666666666554 2222110           


Q ss_pred             ------CCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccC-
Q 041953          123 ------NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEIC-  195 (279)
Q Consensus       123 ------~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-  195 (279)
                            ..++|+.|++++|.+. .+|..    ..+|+.|++.+|.+. .+|..   ..+|+.|++++|.+.. +|.... 
T Consensus       294 Lt~LP~~p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls~-LP~lp~~  363 (788)
T PRK15387        294 LTSLPVLPPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQLAS-LPTLPSE  363 (788)
T ss_pred             cccccccccccceeECCCCccc-cCCCC----cccccccccccCccc-ccccc---ccccceEecCCCccCC-CCCCCcc
Confidence                  1234555555555554 33221    111222222222222 11110   1245555555555542 221110 


Q ss_pred             ----------------CCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCccc
Q 041953          196 ----------------NLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLT  259 (279)
Q Consensus       196 ----------------~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~  259 (279)
                                      ...+|+.|++++|.++ .+|..   .++|+.|++++|+++ .+|..   ..+|+.|++++|.++
T Consensus       364 L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt  435 (788)
T PRK15387        364 LYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT  435 (788)
T ss_pred             cceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc
Confidence                            0124555666666555 23322   245666666666665 34432   235666777777776


Q ss_pred             ccCccccccccccc
Q 041953          260 GITPSSIYKLLFSI  273 (279)
Q Consensus       260 ~~~~~~~~~~~~~~  273 (279)
                      .+ |.+++.+..+.
T Consensus       436 ~L-P~sl~~L~~L~  448 (788)
T PRK15387        436 RL-PESLIHLSSET  448 (788)
T ss_pred             cc-ChHHhhccCCC
Confidence            54 55666655443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.41  E-value=2.7e-13  Score=117.39  Aligned_cols=201  Identities=34%  Similarity=0.482  Sum_probs=154.6

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCC-CCcEEEcccCcccccCCccCCCCCCCcEEEeecc
Q 041953           57 VLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTY-TLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFN  135 (279)
Q Consensus        57 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  135 (279)
                      .+.+..+.+.. ....+..+..++.|++.++.+. .++....... +|+.|++++|.+. .++..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            45666665532 2333445578899999999988 5666556663 8999999999988 55667788999999999999


Q ss_pred             ccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccC
Q 041953          136 TLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIP  215 (279)
Q Consensus       136 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~  215 (279)
                      ++. .++... ...+.|+.|++++|.+. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|.+. ..+
T Consensus       174 ~l~-~l~~~~-~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~  248 (394)
T COG4886         174 DLS-DLPKLL-SNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP  248 (394)
T ss_pred             hhh-hhhhhh-hhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence            997 777755 47889999999999988 66665556667899999999544 45566777888888888888876 446


Q ss_pred             ccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccc
Q 041953          216 RESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIY  267 (279)
Q Consensus       216 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  267 (279)
                      ..+..++.++.|++++|+++.. +. +....+++.+++++|.+...++....
T Consensus       249 ~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~~~~  298 (394)
T COG4886         249 ESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPLIAL  298 (394)
T ss_pred             chhccccccceecccccccccc-cc-ccccCccCEEeccCccccccchhhhc
Confidence            7788888899999999999844 43 88889999999999988877664433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.41  E-value=5.4e-15  Score=126.22  Aligned_cols=175  Identities=27%  Similarity=0.466  Sum_probs=116.7

Q ss_pred             CCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEE
Q 041953           77 SSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLA  156 (279)
Q Consensus        77 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  156 (279)
                      ..-...+++.|++. .+|..+..+-.|+.+.+..|.+. .+|..+.++..|.+++++.|++. .+|..++ .++ |+.|.
T Consensus        75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~lp-Lkvli  149 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-DLP-LKVLI  149 (722)
T ss_pred             cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-cCc-ceeEE
Confidence            33455666777766 66666666666777777777766 56666777777777777777775 6666652 233 67777


Q ss_pred             eecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcc
Q 041953          157 LSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQG  236 (279)
Q Consensus       157 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~  236 (279)
                      +++|+++ .+|..++....|..|+.+.|.+. ..|..++++.+|+.+.+..|.+. .+|..+.. -.|..||+++|++. 
T Consensus       150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-  224 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-  224 (722)
T ss_pred             EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-
Confidence            7777766 66666666666777777777766 56666667777777777777665 45555553 34667777777776 


Q ss_pred             cCCccccCCCCCCeEEccCCccccc
Q 041953          237 AIPREWGNLTGLGILQLSDNFLTGI  261 (279)
Q Consensus       237 ~~~~~~~~~~~L~~L~l~~n~l~~~  261 (279)
                      .+|-.|.++..|++|-|.+|++.+.
T Consensus       225 ~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  225 YLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             ecchhhhhhhhheeeeeccCCCCCC
Confidence            6666677777777777777777665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.33  E-value=2.1e-14  Score=122.66  Aligned_cols=192  Identities=27%  Similarity=0.417  Sum_probs=157.7

Q ss_pred             eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEee
Q 041953           54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFG  133 (279)
Q Consensus        54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  133 (279)
                      ..+..+++.|.+. .+|..+..|..|+.+.++.|.+. .+|..+..+..|++++++.|++. .+|..++.+ -|+.|.++
T Consensus        76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~s  151 (722)
T KOG0532|consen   76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVS  151 (722)
T ss_pred             chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEe
Confidence            4566788888887 67888888889999999999988 78888999999999999999988 778877666 58899999


Q ss_pred             ccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccc
Q 041953          134 FNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGE  213 (279)
Q Consensus       134 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~  213 (279)
                      +|++. .+|..+ +....|..|+.+.|.+. .+|..++.+.+|+.|.+..|.+. .+|..+..+ .|..|+++.|++. .
T Consensus       152 NNkl~-~lp~~i-g~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~  225 (722)
T KOG0532|consen  152 NNKLT-SLPEEI-GLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-Y  225 (722)
T ss_pred             cCccc-cCCccc-ccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-e
Confidence            99997 888888 68889999999999987 77888889999999999999988 566666654 5889999999987 7


Q ss_pred             cCccCCCCCCCCEEeccCCcCcccCCcccc---CCCCCCeEEccCC
Q 041953          214 IPRESGNLAELELMSLSENELQGAIPREWG---NLTGLGILQLSDN  256 (279)
Q Consensus       214 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~---~~~~L~~L~l~~n  256 (279)
                      +|-.|.+|..|++|.|.+|.++ ..|..+.   ..--.++|+.+-+
T Consensus       226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            8889999999999999999997 5565442   2223455666555

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.29  E-value=4e-12  Score=110.09  Aligned_cols=178  Identities=36%  Similarity=0.503  Sum_probs=147.6

Q ss_pred             CeEEEEEcCCCCccccCcccccCCC-CCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLS-SLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD  131 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~-~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  131 (279)
                      ..++.+++.++.++ .++.....+. +|+.|++++|.+. .++..+..+++|+.|++++|++. .++......+.|+.|+
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence            46899999999998 5666666664 9999999999998 66667899999999999999998 6666666889999999


Q ss_pred             eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc
Q 041953          132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ  211 (279)
Q Consensus       132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~  211 (279)
                      +++|++. .+|... .....|+++.+++|.+. ..+..+..+.++..+.+.+|.+. ..+..+..++.++.|++++|.++
T Consensus       193 ls~N~i~-~l~~~~-~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         193 LSGNKIS-DLPPEI-ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             ccCCccc-cCchhh-hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc
Confidence            9999998 888865 44666999999999644 55667888888899988888877 33667788889999999999998


Q ss_pred             cccCccCCCCCCCCEEeccCCcCcccCC
Q 041953          212 GEIPRESGNLAELELMSLSENELQGAIP  239 (279)
Q Consensus       212 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~  239 (279)
                      .. +. ++...+++.|++++|.+....+
T Consensus       269 ~i-~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         269 SI-SS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             cc-cc-ccccCccCEEeccCccccccch
Confidence            44 33 8888999999999998875544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=2.1e-13  Score=113.17  Aligned_cols=212  Identities=21%  Similarity=0.190  Sum_probs=121.8

Q ss_pred             CCCeEEEEEcCCCCccccCc-ccccCCCCCCEEEccCCcccC--CCCccccCCCCCcEEEcccCcccccCCcc-CCCCCC
Q 041953           51 HSHRVTVLNISRLNLTGTIP-SQLGNLSSLQSLNLSCNRLSG--SIPSAIFTTYTLKYVSFRKNQLSGAFPSF-AFNTSS  126 (279)
Q Consensus        51 ~~~~l~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~i~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~l~~  126 (279)
                      +..+|+.+.|.++.+....- .....|++++.|+++.|-+..  ........+|+|+.|+++.|++.-...+. -..++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            34567777777766542111 345567777777777776542  12223345777777777777765222221 125567


Q ss_pred             CcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCC-cccCCCCCccEEEc
Q 041953          127 LQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVP-KEICNLTKLKGLYL  205 (279)
Q Consensus       127 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l  205 (279)
                      |+.|.++.|.+.-.-...+...+|.|+.|++..|............+..|++|++++|.+.+... .....++.|..|++
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            77777777766532222333567777777777774211222223335567777887777663322 23455677777777


Q ss_pred             cCcccccc-cCcc-----CCCCCCCCEEeccCCcCccc-CCccccCCCCCCeEEccCCcccccC
Q 041953          206 GGNRLQGE-IPRE-----SGNLAELELMSLSENELQGA-IPREWGNLTGLGILQLSDNFLTGIT  262 (279)
Q Consensus       206 ~~n~~~~~-~~~~-----~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~  262 (279)
                      +.+.+.+. .|+.     ...+++|++|+++.|+|.+. .-..+..+++|+.+.+..|.++...
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~  342 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET  342 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccc
Confidence            77776532 2222     34567788888888777421 1123445567777777777766543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.28  E-value=7.7e-13  Score=105.27  Aligned_cols=203  Identities=24%  Similarity=0.274  Sum_probs=146.9

Q ss_pred             CeEEEEEcCCCC--------ccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccc---cCC---
Q 041953           53 HRVTVLNISRLN--------LTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG---AFP---  118 (279)
Q Consensus        53 ~~l~~L~l~~~~--------l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~---  118 (279)
                      .++++|..++..        +...+|..+.-+++|..+.++.+.-. .+.+....-|.|+++.+.+.-+..   ..|   
T Consensus       182 ~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~  260 (490)
T KOG1259|consen  182 TQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQDVPSLLPETI  260 (490)
T ss_pred             hheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-heeceeecCchhheeeeecccccccccccchhh
Confidence            378888877642        11234445556788999999988654 222323344667777776543320   011   


Q ss_pred             -----------------ccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEec
Q 041953          119 -----------------SFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGL  181 (279)
Q Consensus       119 -----------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  181 (279)
                                       ..+-.-.-|+++++++|.+. .+..+. .-.|.++.|+++.|++. .. +.+..+++|..||+
T Consensus       261 ~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDL  336 (490)
T KOG1259|consen  261 LADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDL  336 (490)
T ss_pred             hcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhh-hhccceeEEecccccee-ee-hhhhhcccceEeec
Confidence                             11112256889999999997 777777 67899999999999987 32 45888999999999


Q ss_pred             cCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCccc-CCccccCCCCCCeEEccCCcccc
Q 041953          182 SSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGA-IPREWGNLTGLGILQLSDNFLTG  260 (279)
Q Consensus       182 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~  260 (279)
                      ++|.+. ....+--.+.+++.|.+++|.+.+  -..+..+-+|..||+++|+|+.. ....++++|-|+.+.+.+|++.+
T Consensus       337 S~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  337 SGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             ccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            999987 444454567899999999999863  25677888999999999999632 23468999999999999999998


Q ss_pred             cCc
Q 041953          261 ITP  263 (279)
Q Consensus       261 ~~~  263 (279)
                      +..
T Consensus       414 ~vd  416 (490)
T KOG1259|consen  414 SVD  416 (490)
T ss_pred             cch
Confidence            755

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=8.3e-13  Score=109.69  Aligned_cols=186  Identities=22%  Similarity=0.189  Sum_probs=133.5

Q ss_pred             CCCCCCEEEccCCcccCCCC-ccccCCCCCcEEEcccCccccc--CCccCCCCCCCcEEEeeccccccccChhhhcCCCC
Q 041953           75 NLSSLQSLNLSCNRLSGSIP-SAIFTTYTLKYVSFRKNQLSGA--FPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPF  151 (279)
Q Consensus        75 ~l~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  151 (279)
                      ++.+|+.+.+.++.+..... .....|++++.|++++|-+...  .......+|+|+.|+++.|++........-..++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            56789999999988863221 3567899999999999876522  22345688999999999998864333333346788


Q ss_pred             CcEEEeecccccccCC-ccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccC--ccCCCCCCCCEEe
Q 041953          152 LEYLALSQNMFHGGIP-SALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIP--RESGNLAELELMS  228 (279)
Q Consensus       152 L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~  228 (279)
                      |+.|.++.|+++.... ..+..+++|+.|++..|...........-+..|+.|++++|.+.. .+  ...+.++.|+.|+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhh
Confidence            9999999999874322 234567889999999885322223333446689999999998763 33  3457789999999


Q ss_pred             ccCCcCcccC-Ccc-----ccCCCCCCeEEccCCccccc
Q 041953          229 LSENELQGAI-PRE-----WGNLTGLGILQLSDNFLTGI  261 (279)
Q Consensus       229 l~~n~i~~~~-~~~-----~~~~~~L~~L~l~~n~l~~~  261 (279)
                      ++.+.+.... |..     ...+++|++|++..|++..+
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w  316 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW  316 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccc
Confidence            9999886432 222     35678999999999998665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.21  E-value=1.4e-12  Score=105.43  Aligned_cols=185  Identities=25%  Similarity=0.255  Sum_probs=116.3

Q ss_pred             cCCCCCCEEEccCCcccCCCCcc----ccCCCCCcEEEcccCcccc----c---------CCccCCCCCCCcEEEeeccc
Q 041953           74 GNLSSLQSLNLSCNRLSGSIPSA----IFTTYTLKYVSFRKNQLSG----A---------FPSFAFNTSSLQYLDFGFNT  136 (279)
Q Consensus        74 ~~l~~L~~L~l~~~~i~~~~~~~----~~~~~~L~~L~l~~n~~~~----~---------~~~~~~~l~~L~~L~l~~n~  136 (279)
                      ..+++|++|++++|.+....+..    +..+..|++|.+.+|.+..    .         ...-..+-+.|+++..+.|+
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr  168 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR  168 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence            34567777777777766443332    3445667777777776541    1         11223345677788777777


Q ss_pred             cccccC----hhhhcCCCCCcEEEeecccccc----cCCccCCCCccCcEEeccCCccccc----CCcccCCCCCccEEE
Q 041953          137 LSGEIP----ANICSNLPFLEYLALSQNMFHG----GIPSALSNCAYLQRLGLSSNDFSGV----VPKEICNLTKLKGLY  204 (279)
Q Consensus       137 ~~~~~~----~~~~~~~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~  204 (279)
                      +. .-+    ...|+..+.|+.+.+..|.|..    .+...+..+++|+.||+.+|.++..    +-..++.+++|+.++
T Consensus       169 le-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  169 LE-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             cc-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            65 222    2345667788888888877642    1224567788888888888877532    234556677888888


Q ss_pred             ccCcccccccCccC-----CCCCCCCEEeccCCcCccc----CCccccCCCCCCeEEccCCccc
Q 041953          205 LGGNRLQGEIPRES-----GNLAELELMSLSENELQGA----IPREWGNLTGLGILQLSDNFLT  259 (279)
Q Consensus       205 l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l~~n~l~  259 (279)
                      +++|.+.......+     ...|+|+.|.+.+|.|+..    +...+...+.|..|++++|.+.
T Consensus       248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            88887754322221     2357888888888877632    2223455778888888888883

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.19  E-value=1.8e-11  Score=92.47  Aligned_cols=108  Identities=30%  Similarity=0.300  Sum_probs=33.1

Q ss_pred             CCCCCCEEEccCCcccCCCCcccc-CCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCc
Q 041953           75 NLSSLQSLNLSCNRLSGSIPSAIF-TTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLE  153 (279)
Q Consensus        75 ~l~~L~~L~l~~~~i~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  153 (279)
                      +...+++|++.+|.|. .+. .+. .+.+|+.|++++|.+...  +.+..++.|++|++++|++. .+...+...+++|+
T Consensus        17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred             cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence            3445677777777776 332 233 456777777777777632  34556777777777777776 55544434577777


Q ss_pred             EEEeeccccccc-CCccCCCCccCcEEeccCCccc
Q 041953          154 YLALSQNMFHGG-IPSALSNCAYLQRLGLSSNDFS  187 (279)
Q Consensus       154 ~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~  187 (279)
                      +|++++|.+... ....+..+++|+.|++.+|.+.
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            777777777531 1134455666666666666665

>PLN03150 hypothetical protein; Provisional

Probab=99.13  E-value=1e-10  Score=106.35  Aligned_cols=107  Identities=30%  Similarity=0.478  Sum_probs=79.0

Q ss_pred             CcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccC
Q 041953          152 LEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSE  231 (279)
Q Consensus       152 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  231 (279)
                      ++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            56677777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CcCcccCCccccCC-CCCCeEEccCCcc
Q 041953          232 NELQGAIPREWGNL-TGLGILQLSDNFL  258 (279)
Q Consensus       232 n~i~~~~~~~~~~~-~~L~~L~l~~n~l  258 (279)
                      |++.+.+|..+... .++..+++.+|+.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCcc
Confidence            77777777766543 3556677777753

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.08  E-value=9.9e-11  Score=88.48  Aligned_cols=127  Identities=28%  Similarity=0.340  Sum_probs=44.4

Q ss_pred             CCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCccc-CCCCCcc
Q 041953          123 NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEI-CNLTKLK  201 (279)
Q Consensus       123 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~~~~L~  201 (279)
                      +..++++|++.+|.+. .+. ..-..+.+|+.|++++|.++ .+ +.+..++.|+.|++++|.++.. .+.+ ..+++|+
T Consensus        17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred             cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCC
Confidence            4556788888888776 443 23124677888888888876 33 3566777888888888887743 2233 3467788


Q ss_pred             EEEccCccccccc-CccCCCCCCCCEEeccCCcCcccCC---ccccCCCCCCeEEcc
Q 041953          202 GLYLGGNRLQGEI-PRESGNLAELELMSLSENELQGAIP---REWGNLTGLGILQLS  254 (279)
Q Consensus       202 ~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~  254 (279)
                      .|++++|.+.... -..+..+++|+.|++.+|++.....   ..+..+|+|+.||-.
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            8888888776422 1345667788888888887763321   234567777777654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.04  E-value=2.3e-10  Score=71.34  Aligned_cols=61  Identities=38%  Similarity=0.511  Sum_probs=42.3

Q ss_pred             CCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcc
Q 041953          198 TKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFL  258 (279)
Q Consensus       198 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l  258 (279)
                      ++|+.|++++|.++...+..|.++++|++|++++|+++...+.+|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3566777777777655556667777777777777777666666777777777777777754

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.02  E-value=2.9e-11  Score=96.40  Aligned_cols=127  Identities=29%  Similarity=0.286  Sum_probs=53.8

Q ss_pred             CCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEE
Q 041953           77 SSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLA  156 (279)
Q Consensus        77 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  156 (279)
                      ..|+++++++|.|+ .+..+..-.|+++.|++++|.+...  ..+..+++|+.|++++|.+. .+...- .++.+++.|.
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh-~KLGNIKtL~  358 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWH-LKLGNIKTLK  358 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhH-hhhcCEeeee
Confidence            34445555555444 3333444444555555555544321  22444445555555554443 222222 3344444455


Q ss_pred             eecccccccCCccCCCCccCcEEeccCCcccccC-CcccCCCCCccEEEccCccc
Q 041953          157 LSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVV-PKEICNLTKLKGLYLGGNRL  210 (279)
Q Consensus       157 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~~  210 (279)
                      +++|.+. . ...+..+.+|..||+++|.|.... -..+++++.|+++.+.+|++
T Consensus       359 La~N~iE-~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  359 LAQNKIE-T-LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hhhhhHh-h-hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            5444443 1 123344444444444444443211 12233444444444444444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.94  E-value=1.3e-09  Score=67.94  Aligned_cols=61  Identities=34%  Similarity=0.507  Sum_probs=44.4

Q ss_pred             ccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcC
Q 041953          174 AYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENEL  234 (279)
Q Consensus       174 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i  234 (279)
                      ++|++|++++|.+....+..|..+++|++|++++|.++...+..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3567777777777766566777777777777777777766667777777777777777764

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.93  E-value=8.2e-11  Score=95.40  Aligned_cols=183  Identities=20%  Similarity=0.221  Sum_probs=135.3

Q ss_pred             CCeEEEEEcCCCCccccCcc----cccCCCCCCEEEccCCcccCCCC-------------ccccCCCCCcEEEcccCccc
Q 041953           52 SHRVTVLNISRLNLTGTIPS----QLGNLSSLQSLNLSCNRLSGSIP-------------SAIFTTYTLKYVSFRKNQLS  114 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~----~~~~l~~L~~L~l~~~~i~~~~~-------------~~~~~~~~L~~L~l~~n~~~  114 (279)
                      ++++++|+||+|-+....+.    -++.+..|++|++.+|.+.....             .....-++|+++...+|++.
T Consensus        91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen   91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence            45999999999988744333    34567899999999998863211             12344578999999999876


Q ss_pred             cc----CCccCCCCCCCcEEEeeccccccc---cChhhhcCCCCCcEEEeecccccc----cCCccCCCCccCcEEeccC
Q 041953          115 GA----FPSFAFNTSSLQYLDFGFNTLSGE---IPANICSNLPFLEYLALSQNMFHG----GIPSALSNCAYLQRLGLSS  183 (279)
Q Consensus       115 ~~----~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~  183 (279)
                      ..    +...+...+.|+.+.+..|.+...   +....+..++.|+.||+..|.++.    .+...+..+++|++|++++
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d  250 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD  250 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence            22    224567789999999999988632   233446789999999999998763    3445678888999999999


Q ss_pred             CcccccCCc----cc-CCCCCccEEEccCcccccc----cCccCCCCCCCCEEeccCCcC
Q 041953          184 NDFSGVVPK----EI-CNLTKLKGLYLGGNRLQGE----IPRESGNLAELELMSLSENEL  234 (279)
Q Consensus       184 n~~~~~~~~----~l-~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~i  234 (279)
                      |.+....-.    .+ ...+.|+.+.+.+|.++..    +.......+.|+.|+|++|.+
T Consensus       251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            988653322    22 2368999999999998732    222344579999999999998

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.82  E-value=2.4e-10  Score=99.45  Aligned_cols=57  Identities=37%  Similarity=0.538  Sum_probs=31.2

Q ss_pred             ccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCccc
Q 041953          200 LKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLT  259 (279)
Q Consensus       200 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~  259 (279)
                      |+.+++++|.+. ..+..+..+..+..+++.+|++...  ..+...+.+..+....|++.
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence            566666666665 3334455566666666666666422  12344445555555555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.71  E-value=2.2e-09  Score=93.50  Aligned_cols=202  Identities=26%  Similarity=0.264  Sum_probs=100.5

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF  132 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  132 (279)
                      ..++.+++.+|.+..+ ...+..+.+|++|++++|.|+..  ..+..++.|+.|++.+|.+...  ..+..+..|+.+++
T Consensus        95 ~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l  169 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDL  169 (414)
T ss_pred             cceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccC
Confidence            4566666666666532 22245566666666666666532  1234455566666666666522  33334666666666


Q ss_pred             eccccccccChhhhcCCCCCcEEEeecccccccC-------------C-c------cCCCCcc--CcEEeccCCcccccC
Q 041953          133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGGI-------------P-S------ALSNCAY--LQRLGLSSNDFSGVV  190 (279)
Q Consensus       133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-------------~-~------~l~~l~~--L~~L~l~~n~~~~~~  190 (279)
                      ++|.+. .+.......+.+++.+++.+|.+....             + .      .+..+..  |+.+.+++|.+.. .
T Consensus       170 ~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~-~  247 (414)
T KOG0531|consen  170 SYNRIV-DIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISR-S  247 (414)
T ss_pred             Ccchhh-hhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcccc-c
Confidence            666665 333310134555555555555443100             0 0      0111111  4555566665542 2


Q ss_pred             CcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCccc---CCcc-ccCCCCCCeEEccCCcccccCc
Q 041953          191 PKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGA---IPRE-WGNLTGLGILQLSDNFLTGITP  263 (279)
Q Consensus       191 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~---~~~~-~~~~~~L~~L~l~~n~l~~~~~  263 (279)
                      +..+..+.++..+++.++.+...  ..+...+.+..+....+++...   .... ....+.++.+.+..|++....+
T Consensus       248 ~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  248 PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             cccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            23344555666666666665422  2233445555555555554311   1111 3445566666666666655443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.70  E-value=1.6e-10  Score=102.08  Aligned_cols=179  Identities=29%  Similarity=0.260  Sum_probs=115.5

Q ss_pred             cccccCCCCCCEEEccCCcccCCCCccccCC-CCCcEEEcccCccc----------ccCCccCCCCCCCcEEEeeccccc
Q 041953           70 PSQLGNLSSLQSLNLSCNRLSGSIPSAIFTT-YTLKYVSFRKNQLS----------GAFPSFAFNTSSLQYLDFGFNTLS  138 (279)
Q Consensus        70 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~-~~L~~L~l~~n~~~----------~~~~~~~~~l~~L~~L~l~~n~~~  138 (279)
                      |-.+..+..|+.|.++++.+..  ...+..+ .+|++| +.+|...          +.+...+ .-..|...++++|.+.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~L-IC~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKL-ICHNSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhh-hhhccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence            5556667888888888887762  1111111 134444 2233222          1111111 1135677778888875


Q ss_pred             cccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccC
Q 041953          139 GEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES  218 (279)
Q Consensus       139 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~  218 (279)
                       .+...+ +-++.++.|++++|++.+.  +.+..++.|++||++.|.+. ..|..-..-..|+.|.+++|.++..  ..+
T Consensus       178 -~mD~SL-qll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gi  250 (1096)
T KOG1859|consen  178 -LMDESL-QLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGI  250 (1096)
T ss_pred             -hHHHHH-HHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhH
Confidence             555444 6688899999999988633  37888889999999999887 4443222223589999999988733  466


Q ss_pred             CCCCCCCEEeccCCcCcccC-CccccCCCCCCeEEccCCccc
Q 041953          219 GNLAELELMSLSENELQGAI-PREWGNLTGLGILQLSDNFLT  259 (279)
Q Consensus       219 ~~~~~L~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~l~  259 (279)
                      .++.+|+.||+++|-+.+.- -..++.+..|+.|.|.+|++-
T Consensus       251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            78889999999999876422 123566778888999998873

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=1.7e-10  Score=91.86  Aligned_cols=177  Identities=19%  Similarity=0.151  Sum_probs=110.0

Q ss_pred             CCCEEEccCCcccC-CCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccc-cccccChhhhcCCCCCcEE
Q 041953           78 SLQSLNLSCNRLSG-SIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNT-LSGEIPANICSNLPFLEYL  155 (279)
Q Consensus        78 ~L~~L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L  155 (279)
                      .|+.||+++..|+. .....+..|.+|+.|.+.++++.+.+...+....+|+.++++++. ++.......+.+++.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            57888888877762 233455678888888888888877766777788888888888764 2222333456788888888


Q ss_pred             EeecccccccCCccC-CC-CccCcEEeccCCccc--ccCCcc-cCCCCCccEEEccCcc-cccccCccCCCCCCCCEEec
Q 041953          156 ALSQNMFHGGIPSAL-SN-CAYLQRLGLSSNDFS--GVVPKE-ICNLTKLKGLYLGGNR-LQGEIPRESGNLAELELMSL  229 (279)
Q Consensus       156 ~l~~n~l~~~~~~~l-~~-l~~L~~L~l~~n~~~--~~~~~~-l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l  229 (279)
                      ++++|.+.......+ .. -.+|..|+++++.-.  ...-.. ...+++|..|++++|. ++...-..+..++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            888887653222111 11 245677777665321  111111 2456777777777765 33333345666777777777


Q ss_pred             cCCcCcccCCcc---ccCCCCCCeEEccCC
Q 041953          230 SENELQGAIPRE---WGNLTGLGILQLSDN  256 (279)
Q Consensus       230 ~~n~i~~~~~~~---~~~~~~L~~L~l~~n  256 (279)
                      +.|-.  ++|..   +...|.|.+|++.++
T Consensus       346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  346 SRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            77743  34433   345567777776654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.65  E-value=1.8e-08  Score=94.37  Aligned_cols=127  Identities=23%  Similarity=0.237  Sum_probs=74.4

Q ss_pred             eEEEEEcCCCCccccCcccccCCCCCCEEEccCCc--ccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953           54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNR--LSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD  131 (279)
Q Consensus        54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~--i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  131 (279)
                      .++.+.+-++.+. .++.... .+.|++|-+.+|.  +.....+.|..++.|++|++++|.-.+.+|..++.+-+|++|+
T Consensus       524 ~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  524 SVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             heeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            3444444455443 2232222 2356666666664  3323333455677777777776655556677777777777777


Q ss_pred             eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCC
Q 041953          132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSN  184 (279)
Q Consensus       132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  184 (279)
                      +++..+. .+|..+ .+++.|.+|++..+......+.....+.+|++|.+...
T Consensus       602 L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  602 LSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccCCCcc-ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            7777765 666666 66777777777665544344444455666777666544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=1.3e-10  Score=92.65  Aligned_cols=219  Identities=19%  Similarity=0.124  Sum_probs=145.2

Q ss_pred             CeEEEEEcCCCCccc-cCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccC--CccCCCCCCCcE
Q 041953           53 HRVTVLNISRLNLTG-TIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAF--PSFAFNTSSLQY  129 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~  129 (279)
                      ++++++||++..++. ..-..++.+.+|+.|.+.++.+.+.+...+....+|+.++++.++--...  .-.+.++..|.+
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            369999999988873 33455678899999999999999888888899999999999998632111  123568899999


Q ss_pred             EEeeccccccccChhhhc-CCCCCcEEEeeccccc---ccCCccCCCCccCcEEeccCCc-ccccCCcccCCCCCccEEE
Q 041953          130 LDFGFNTLSGEIPANICS-NLPFLEYLALSQNMFH---GGIPSALSNCAYLQRLGLSSND-FSGVVPKEICNLTKLKGLY  204 (279)
Q Consensus       130 L~l~~n~~~~~~~~~~~~-~~~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~  204 (279)
                      |++++|....+...-+.. --++|+.|+++++.-.   ..+..-...+++|.+||+++|- ++...-..+..++.|+++.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            999999876443222222 2467888999876421   1122223568999999999864 3332333556788999999


Q ss_pred             ccCcccccccC---ccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccccccccccc
Q 041953          205 LGGNRLQGEIP---RESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKFG  276 (279)
Q Consensus       205 l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~  276 (279)
                      ++.|..  ++|   -.+...|.|.+|++.++--.+...-....+++|+.   ..--++....+..+.+.+.-.||
T Consensus       345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki---n~q~~~~iarpv~~~~~s~~IWg  414 (419)
T KOG2120|consen  345 LSRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI---NCQHFNFIARPVSGQCESNMIWG  414 (419)
T ss_pred             hhhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc---cceeeeeeecccccccccchhhc
Confidence            999874  334   34677899999999876332121112234555442   22223333344566666665665

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.64  E-value=1.7e-08  Score=94.44  Aligned_cols=110  Identities=25%  Similarity=0.279  Sum_probs=91.3

Q ss_pred             CCCCeEEEEEcCCCC--ccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCC
Q 041953           50 VHSHRVTVLNISRLN--LTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSL  127 (279)
Q Consensus        50 ~~~~~l~~L~l~~~~--l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L  127 (279)
                      ..++++++|-+..+.  +..+..+.|..++.|+.|++++|.-.+.+|..++.+-+|++|+++++.+. .+|..+..+..|
T Consensus       542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL  620 (889)
T ss_pred             CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence            345578899988886  55556667888999999999988766689999999999999999999998 889999999999


Q ss_pred             cEEEeeccccccccChhhhcCCCCCcEEEeeccc
Q 041953          128 QYLDFGFNTLSGEIPANICSNLPFLEYLALSQNM  161 (279)
Q Consensus       128 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~  161 (279)
                      .+|++..+.....+ ..+...+++|++|.+....
T Consensus       621 ~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  621 IYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             heeccccccccccc-cchhhhcccccEEEeeccc
Confidence            99999988765334 4554679999999997654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.50  E-value=3.3e-08  Score=78.11  Aligned_cols=206  Identities=17%  Similarity=0.159  Sum_probs=122.5

Q ss_pred             CeEEEEEcCCCCccc----cCcccccCCCCCCEEEccCCccc---CCCC-------ccccCCCCCcEEEcccCcccccCC
Q 041953           53 HRVTVLNISRLNLTG----TIPSQLGNLSSLQSLNLSCNRLS---GSIP-------SAIFTTYTLKYVSFRKNQLSGAFP  118 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~----~~~~~~~~l~~L~~L~l~~~~i~---~~~~-------~~~~~~~~L~~L~l~~n~~~~~~~  118 (279)
                      ..++.++|++|.|..    .+...+++-.+|+..+++.-...   +.++       ..+..||+|+..+++.|-+....|
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            367888888888763    34455666677777777763221   1222       334567888888888887765544


Q ss_pred             c----cCCCCCCCcEEEeeccccccccChh-----h--------hcCCCCCcEEEeecccccccCCc-----cCCCCccC
Q 041953          119 S----FAFNTSSLQYLDFGFNTLSGEIPAN-----I--------CSNLPFLEYLALSQNMFHGGIPS-----ALSNCAYL  176 (279)
Q Consensus       119 ~----~~~~l~~L~~L~l~~n~~~~~~~~~-----~--------~~~~~~L~~L~l~~n~l~~~~~~-----~l~~l~~L  176 (279)
                      +    .+.+...|.+|.+++|.+. .+...     .        ..+-|.|+.+.+..|.+.. .+.     .+..-..|
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~l  187 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHENL  187 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcCc
Confidence            3    3456677888888887664 22111     1        1345678888887777652 221     12233467


Q ss_pred             cEEeccCCcccccC-----CcccCCCCCccEEEccCccccc----ccCccCCCCCCCCEEeccCCcCcccCCccc-----
Q 041953          177 QRLGLSSNDFSGVV-----PKEICNLTKLKGLYLGGNRLQG----EIPRESGNLAELELMSLSENELQGAIPREW-----  242 (279)
Q Consensus       177 ~~L~l~~n~~~~~~-----~~~l~~~~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-----  242 (279)
                      +++.+..|.|....     -..+.++.+|+.|++++|.++.    .+.+.+..++.|+.|.+.+|-++.....++     
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~  267 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN  267 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence            77777777765221     1123456677888888877652    223445556667777777776654333222     


Q ss_pred             -cCCCCCCeEEccCCcccc
Q 041953          243 -GNLTGLGILQLSDNFLTG  260 (279)
Q Consensus       243 -~~~~~L~~L~l~~n~l~~  260 (279)
                       ...|+|..|...+|...+
T Consensus       268 e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         268 EKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             hhcCCCccccccchhhhcC
Confidence             134666777777765544

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.48  E-value=1.6e-07  Score=53.71  Aligned_cols=40  Identities=48%  Similarity=1.050  Sum_probs=30.7

Q ss_pred             hhHHHHHHHHHHhccCCCcccccCCCCCC--CCCcceeeeeeC
Q 041953            9 TTDRDALLALKAHITHDPTNFFAKNWNTS--TPVCNWTGVTCD   49 (279)
Q Consensus         9 ~~~~~~l~~~~~~~~~~~~~~~~~~w~~~--~~~c~~~~~~~~   49 (279)
                      .+|+++|++||..+..+|...+ .+|...  .++|.|.|+.|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l-~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVL-SSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCC-TT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCccc-ccCCCcCCCCCeeeccEEeC
Confidence            5799999999999986676677 999987  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.47  E-value=2.2e-08  Score=80.09  Aligned_cols=207  Identities=16%  Similarity=0.144  Sum_probs=105.2

Q ss_pred             EEEEEcCCCCccccC-ccccc-CCCCCCEEEccCCcccC--CCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEE
Q 041953           55 VTVLNISRLNLTGTI-PSQLG-NLSSLQSLNLSCNRLSG--SIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYL  130 (279)
Q Consensus        55 l~~L~l~~~~l~~~~-~~~~~-~l~~L~~L~l~~~~i~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  130 (279)
                      +..+.+.++.+...- ...|+ ....++++++.+|.|++  .+...+.++|.|++|++++|++...+...-....+|++|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            445566666654211 11222 34678888898888873  344556778889999999888774443332456688888


Q ss_pred             EeeccccccccChhhhcCCCCCcEEEeecccccc--cCCccCCCC-ccCcEEeccCCcccc--cCCcccCCCCCccEEEc
Q 041953          131 DFGFNTLSGEIPANICSNLPFLEYLALSQNMFHG--GIPSALSNC-AYLQRLGLSSNDFSG--VVPKEICNLTKLKGLYL  205 (279)
Q Consensus       131 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~l~~l-~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l  205 (279)
                      .+.+..+.-.-.......+|.+++++++.|.+..  ...+..... +.+++|.+..|...-  .....-+-++++..+.+
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v  206 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV  206 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence            8887766433333344677888888888774321  111112111 234444444433210  00001112334444555


Q ss_pred             cCcccccc-cCccCCCCCCCCEEeccCCcCccc-CCccccCCCCCCeEEccCCccccc
Q 041953          206 GGNRLQGE-IPRESGNLAELELMSLSENELQGA-IPREWGNLTGLGILQLSDNFLTGI  261 (279)
Q Consensus       206 ~~n~~~~~-~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~  261 (279)
                      ..|++... ........+.+..|+|+.++|..- .-..+.+++.|..|.+.++++...
T Consensus       207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  207 CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence            55544321 122333444455555555554311 012344555555555555555443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.30  E-value=6.4e-07  Score=51.35  Aligned_cols=40  Identities=38%  Similarity=0.587  Sum_probs=27.0

Q ss_pred             CCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccC
Q 041953          222 AELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGIT  262 (279)
Q Consensus       222 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~  262 (279)
                      ++|++|++++|+|+ .+|..+.++++|+.|++++|+++++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCCc
Confidence            35777777777777 44555777777888888877777653

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.23  E-value=2.4e-08  Score=70.89  Aligned_cols=84  Identities=24%  Similarity=0.308  Sum_probs=45.0

Q ss_pred             CCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEE
Q 041953          125 SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLY  204 (279)
Q Consensus       125 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~  204 (279)
                      ..|..+++++|.+. ..|+.+-..++.++.+++.+|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|+
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            34444555555554 555554445555666666666655 44545555566666666666555 3344444455555555


Q ss_pred             ccCcccc
Q 041953          205 LGGNRLQ  211 (279)
Q Consensus       205 l~~n~~~  211 (279)
                      ..+|.+.
T Consensus       130 s~~na~~  136 (177)
T KOG4579|consen  130 SPENARA  136 (177)
T ss_pred             CCCCccc
Confidence            5555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.22  E-value=7.8e-09  Score=91.69  Aligned_cols=127  Identities=24%  Similarity=0.290  Sum_probs=83.6

Q ss_pred             CCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEe
Q 041953           78 SLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLAL  157 (279)
Q Consensus        78 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l  157 (279)
                      .|...+++.|.+. ....++.-++.|++|+|++|++...  .++..++.|++||+++|.+. .+|..-...+. |+.|.+
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence            4556666666665 4455666677788888888887633  36777888888888888876 66654433333 788888


Q ss_pred             ecccccccCCccCCCCccCcEEeccCCcccccCC-cccCCCCCccEEEccCcccc
Q 041953          158 SQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVP-KEICNLTKLKGLYLGGNRLQ  211 (279)
Q Consensus       158 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~  211 (279)
                      .+|.++..  ..+.++++|+.||+++|-+.+.-. .-+..+..|+.|++.||++-
T Consensus       240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            88877522  356677778888888877654211 12334556777777777653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.20  E-value=2.5e-07  Score=74.18  Aligned_cols=201  Identities=19%  Similarity=0.170  Sum_probs=128.6

Q ss_pred             CCCeEEEEEcCCCCccc--cCcccccCCCCCCEEEccCCcccCCCCccc-cCCCCCcEEEcccCcccc-cCCccCCCCCC
Q 041953           51 HSHRVTVLNISRLNLTG--TIPSQLGNLSSLQSLNLSCNRLSGSIPSAI-FTTYTLKYVSFRKNQLSG-AFPSFAFNTSS  126 (279)
Q Consensus        51 ~~~~l~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~-~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~  126 (279)
                      .+++|+.+||.+|.++.  .+...+.+++.|+.|+++.|.+...+ +.. ....+|++|-+.+..+.. .....+..+|.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            35689999999999873  44555678999999999999987332 222 345689999998876542 33455678889


Q ss_pred             CcEEEeecccccc-ccChhhhcC-CCCCcEEEeecccccc--cCCccCCCCccCcEEeccCCcccccC-CcccCCCCCcc
Q 041953          127 LQYLDFGFNTLSG-EIPANICSN-LPFLEYLALSQNMFHG--GIPSALSNCAYLQRLGLSSNDFSGVV-PKEICNLTKLK  201 (279)
Q Consensus       127 L~~L~l~~n~~~~-~~~~~~~~~-~~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~~~~L~  201 (279)
                      +++|+++.|.... .+....... .+.++.+++.+|....  ..-..-...+++..+.+..|.+.... -..+..++.+.
T Consensus       148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~  227 (418)
T KOG2982|consen  148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS  227 (418)
T ss_pred             hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence            9999999885431 111111111 2345556665554320  00011123456777778888765322 23344566777


Q ss_pred             EEEccCcccccc-cCccCCCCCCCCEEeccCCcCcccCCc------cccCCCCCCeEE
Q 041953          202 GLYLGGNRLQGE-IPRESGNLAELELMSLSENELQGAIPR------EWGNLTGLGILQ  252 (279)
Q Consensus       202 ~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~i~~~~~~------~~~~~~~L~~L~  252 (279)
                      .|+++.+++.+. ..+.+.+++.|..|.++++.+.+.+..      .++++++++.|+
T Consensus       228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             hhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            888888887642 236778899999999999988754322      245677777765

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.16  E-value=9.4e-06  Score=58.59  Aligned_cols=122  Identities=21%  Similarity=0.284  Sum_probs=43.6

Q ss_pred             cCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCC
Q 041953          120 FAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTK  199 (279)
Q Consensus       120 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~  199 (279)
                      .|..+.+|+.+.+.. .+. .+....|.++.+|+.+.+..+ +.......+..++.++.+.+.+ .+.......|..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            344555566665543 233 455555555555666665543 3323333455554555555543 222233334444555


Q ss_pred             ccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCC
Q 041953          200 LKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGL  248 (279)
Q Consensus       200 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L  248 (279)
                      ++.+.+..+ +.......+.+. .++.+.+.. .+.......|.++++|
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            555555443 322333444443 555555543 2222333444444443

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.12  E-value=1.6e-05  Score=67.78  Aligned_cols=53  Identities=15%  Similarity=0.236  Sum_probs=27.0

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccC
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKN  111 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n  111 (279)
                      ..++.|++++|.++ .+|. +  -.+|++|.+++|.--..+|+.+  .++|+.|.+++|
T Consensus        52 ~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         52 RASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             cCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            45566666666555 3341 1  1246666666543222444332  245666666665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.12  E-value=6.9e-06  Score=62.39  Aligned_cols=82  Identities=20%  Similarity=0.264  Sum_probs=37.9

Q ss_pred             CCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeecccccc--ccChhhhcCCCCCcEE
Q 041953           78 SLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSG--EIPANICSNLPFLEYL  155 (279)
Q Consensus        78 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L  155 (279)
                      +...+++++|.+. . -+.|..++.|.+|.+.+|+|+...|.--..+++|+.|.+.+|.+..  ++.+  ...+++|++|
T Consensus        43 ~~d~iDLtdNdl~-~-l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p--La~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-K-LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP--LASCPKLEYL  118 (233)
T ss_pred             ccceecccccchh-h-cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch--hccCCcccee
Confidence            3445555555553 1 1234455555555555555553333333334455555555555431  1111  1234555555


Q ss_pred             Eeeccccc
Q 041953          156 ALSQNMFH  163 (279)
Q Consensus       156 ~l~~n~l~  163 (279)
                      .+-+|.++
T Consensus       119 tll~Npv~  126 (233)
T KOG1644|consen  119 TLLGNPVE  126 (233)
T ss_pred             eecCCchh
Confidence            55555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.10  E-value=9.7e-06  Score=61.62  Aligned_cols=128  Identities=20%  Similarity=0.172  Sum_probs=91.6

Q ss_pred             CCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEee
Q 041953           79 LQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS  158 (279)
Q Consensus        79 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  158 (279)
                      =+.+++++.++. .+...-....+...+++++|.+..  ...|..++.|.+|.+++|+++ .+...+-..+++|+.|.+.
T Consensus        21 e~e~~LR~lkip-~ienlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   21 ERELDLRGLKIP-VIENLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             cccccccccccc-chhhccccccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEec
Confidence            355677776665 222211234467788999998762  256668899999999999998 7776665678899999999


Q ss_pred             ccccccc-CCccCCCCccCcEEeccCCcccccCC---cccCCCCCccEEEccCccc
Q 041953          159 QNMFHGG-IPSALSNCAYLQRLGLSSNDFSGVVP---KEICNLTKLKGLYLGGNRL  210 (279)
Q Consensus       159 ~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~n~~  210 (279)
                      +|.+... ..+.+..++.|++|.+-+|.+....-   ..+..+++|+.|+++....
T Consensus        97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen   97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            9988621 12457788899999999988764322   2456778999999877643

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.05  E-value=3.2e-05  Score=55.78  Aligned_cols=124  Identities=16%  Similarity=0.206  Sum_probs=44.8

Q ss_pred             ChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCC
Q 041953          142 PANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNL  221 (279)
Q Consensus       142 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~  221 (279)
                      +...|.++.+|+.+.+.. .+.......+..+.+++.+.+..+ +.......+.++..++.+.+.+ .+.......+..+
T Consensus         4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence            344445555555555543 233233344555555555555443 3333334445554555555544 2222333444445


Q ss_pred             CCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccccc
Q 041953          222 AELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLF  271 (279)
Q Consensus       222 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  271 (279)
                      ++|+.+++..+ +.......|.++ .|+.+.+.. .+..+...+|.++.+
T Consensus        81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~  127 (129)
T PF13306_consen   81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTK  127 (129)
T ss_dssp             TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG----
T ss_pred             ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccccc
Confidence            55555555443 332333445554 555555543 444444455555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.04  E-value=2.8e-07  Score=65.58  Aligned_cols=82  Identities=24%  Similarity=0.305  Sum_probs=39.9

Q ss_pred             CCCEEEccCCcccCCCCcccc-CCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEE
Q 041953           78 SLQSLNLSCNRLSGSIPSAIF-TTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLA  156 (279)
Q Consensus        78 ~L~~L~l~~~~i~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  156 (279)
                      .|+..++++|.+. ..|..|. .++.++.|++++|.+. .+|..+..++.|+.|++..|++. ..|.-++. +.++..|+
T Consensus        54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~~Ld  129 (177)
T KOG4579|consen   54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLDMLD  129 (177)
T ss_pred             eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH-HHhHHHhc
Confidence            3444455555554 3333333 2334555555555555 44444555555555555555554 44443322 55555555


Q ss_pred             eeccccc
Q 041953          157 LSQNMFH  163 (279)
Q Consensus       157 l~~n~l~  163 (279)
                      ..+|.+.
T Consensus       130 s~~na~~  136 (177)
T KOG4579|consen  130 SPENARA  136 (177)
T ss_pred             CCCCccc
Confidence            5555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.04  E-value=1.2e-06  Score=69.52  Aligned_cols=210  Identities=20%  Similarity=0.176  Sum_probs=139.3

Q ss_pred             CCCeEEEEEcCCCCcc---ccC-------cccccCCCCCCEEEccCCcccCCCCc----cccCCCCCcEEEcccCccccc
Q 041953           51 HSHRVTVLNISRLNLT---GTI-------PSQLGNLSSLQSLNLSCNRLSGSIPS----AIFTTYTLKYVSFRKNQLSGA  116 (279)
Q Consensus        51 ~~~~l~~L~l~~~~l~---~~~-------~~~~~~l~~L~~L~l~~~~i~~~~~~----~~~~~~~L~~L~l~~n~~~~~  116 (279)
                      ....++..++++--..   ..+       -+++.+|++|+.+++++|.|....|.    .+..-..|.+|.+++|.+...
T Consensus        56 ~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~  135 (388)
T COG5238          56 NVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI  135 (388)
T ss_pred             hhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCcc
Confidence            3456777777654211   112       23556789999999999998865554    345567799999999976511


Q ss_pred             ----CC---------ccCCCCCCCcEEEeeccccccccCh----hhhcCCCCCcEEEeecccccccCC-----ccCCCCc
Q 041953          117 ----FP---------SFAFNTSSLQYLDFGFNTLSGEIPA----NICSNLPFLEYLALSQNMFHGGIP-----SALSNCA  174 (279)
Q Consensus       117 ----~~---------~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~-----~~l~~l~  174 (279)
                          +.         .-..+-|.|+++....|++. ..+.    ..+..-..|+++.+..|.|.....     ..+..+.
T Consensus       136 aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~  214 (388)
T COG5238         136 AGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSH  214 (388)
T ss_pred             chhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhC
Confidence                11         11235588999999999886 4333    233444689999999998762211     1345578


Q ss_pred             cCcEEeccCCcccccC----CcccCCCCCccEEEccCcccccccCcc----C--CCCCCCCEEeccCCcCcccCCc----
Q 041953          175 YLQRLGLSSNDFSGVV----PKEICNLTKLKGLYLGGNRLQGEIPRE----S--GNLAELELMSLSENELQGAIPR----  240 (279)
Q Consensus       175 ~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~~~~~~~~~----~--~~~~~L~~L~l~~n~i~~~~~~----  240 (279)
                      +|+.|++..|.++-..    -..++.|+.|+.|++.+|-+.......    |  ...++|..|...+|.+.+-.-.    
T Consensus       215 ~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l  294 (388)
T COG5238         215 SLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISL  294 (388)
T ss_pred             cceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeech
Confidence            9999999999886332    234567788999999999775433222    1  2357889999999976542211    


Q ss_pred             -cc--cCCCCCCeEEccCCccccc
Q 041953          241 -EW--GNLTGLGILQLSDNFLTGI  261 (279)
Q Consensus       241 -~~--~~~~~L~~L~l~~n~l~~~  261 (279)
                       .+  ..+|-|..|.+.+|.+...
T Consensus       295 ~~~e~~~~p~L~~le~ngNr~~E~  318 (388)
T COG5238         295 NEFEQDAVPLLVDLERNGNRIKEL  318 (388)
T ss_pred             hhhhhcccHHHHHHHHccCcchhH
Confidence             11  4577888888888888764

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.94  E-value=8e-06  Score=46.77  Aligned_cols=34  Identities=24%  Similarity=0.481  Sum_probs=12.7

Q ss_pred             CCEEEccCCcccCCCCccccCCCCCcEEEcccCcc
Q 041953           79 LQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQL  113 (279)
Q Consensus        79 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~  113 (279)
                      |++|++++|.|. .+|..+..+++|+.|++++|++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence            344444444443 2233334444444444444433

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.77  E-value=0.00017  Score=61.68  Aligned_cols=138  Identities=15%  Similarity=0.161  Sum_probs=88.0

Q ss_pred             ccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCC
Q 041953           73 LGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFL  152 (279)
Q Consensus        73 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L  152 (279)
                      +..+.+++.|++++|.+. .+|.   -.++|+.|.+++|.-...+|..+  .++|++|.+++|.....+|       ..|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------~sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------ESV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-------ccc
Confidence            445688999999999887 5662   23469999999865444556544  3589999999883222444       347


Q ss_pred             cEEEeecccccccCCccCCCC-ccCcEEeccCCc-ccc-cCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEec
Q 041953          153 EYLALSQNMFHGGIPSALSNC-AYLQRLGLSSND-FSG-VVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSL  229 (279)
Q Consensus       153 ~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~-~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  229 (279)
                      +.|++..+... .    +..+ .+|+.|.+.++. ... ..+..  -.++|+.|.+.+|... ..|..+.  .+|+.|++
T Consensus       115 e~L~L~~n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l  184 (426)
T PRK15386        115 RSLEIKGSATD-S----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL  184 (426)
T ss_pred             ceEEeCCCCCc-c----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence            77777665443 1    2222 356777775432 110 11111  1257999999998865 4555444  68999999


Q ss_pred             cCCc
Q 041953          230 SENE  233 (279)
Q Consensus       230 ~~n~  233 (279)
                      +.+.
T Consensus       185 s~n~  188 (426)
T PRK15386        185 HIEQ  188 (426)
T ss_pred             cccc
Confidence            8763

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.75  E-value=9.6e-06  Score=74.49  Aligned_cols=180  Identities=18%  Similarity=0.228  Sum_probs=104.6

Q ss_pred             eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCC--CC-----------ccc--cCCCCCcEEEcccCccc-ccC
Q 041953           54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGS--IP-----------SAI--FTTYTLKYVSFRKNQLS-GAF  117 (279)
Q Consensus        54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~--~~-----------~~~--~~~~~L~~L~l~~n~~~-~~~  117 (279)
                      +++.+++.+.......-....... |+++.+.+-.....  ..           ..+  ..-.+|++|++++...- ...
T Consensus        61 ~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W  139 (699)
T KOG3665|consen   61 NLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGW  139 (699)
T ss_pred             eeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccH
Confidence            677777777665533333333333 66666655322100  00           000  01136888888875422 122


Q ss_pred             CccC-CCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccc-cCCcccC
Q 041953          118 PSFA-FNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSG-VVPKEIC  195 (279)
Q Consensus       118 ~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~  195 (279)
                      +..+ ..+|+|+.|.+.+-.+...-....+.++++|..||+++.+++..  .+++.+++|+.|.+.+=.+.. ..-..+.
T Consensus       140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF  217 (699)
T KOG3665|consen  140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLF  217 (699)
T ss_pred             HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence            2222 35688888888886664332345567888888888888888633  577788888888777655542 1112355


Q ss_pred             CCCCccEEEccCccccccc------CccCCCCCCCCEEeccCCcCcc
Q 041953          196 NLTKLKGLYLGGNRLQGEI------PRESGNLAELELMSLSENELQG  236 (279)
Q Consensus       196 ~~~~L~~L~l~~n~~~~~~------~~~~~~~~~L~~L~l~~n~i~~  236 (279)
                      ++++|+.||++........      -.--..+|.|+.||.|++.+.+
T Consensus       218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            6788888888776543211      0111346778888888776654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.67  E-value=6.4e-06  Score=75.63  Aligned_cols=141  Identities=21%  Similarity=0.216  Sum_probs=100.1

Q ss_pred             CCCcEEEeecccccccc-ChhhhcCCCCCcEEEeecccccc-cCCccCCCCccCcEEeccCCcccccCCcccCCCCCccE
Q 041953          125 SSLQYLDFGFNTLSGEI-PANICSNLPFLEYLALSQNMFHG-GIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKG  202 (279)
Q Consensus       125 ~~L~~L~l~~n~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~  202 (279)
                      .+|++|++++......- +..+...+|.|+.|.+.+-.+.. .+.....+.++|..||++++.++..  ..++++.+|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            68999999886543222 22334568999999998866532 2234456789999999999998854  56788899999


Q ss_pred             EEccCccccc-ccCccCCCCCCCCEEeccCCcCcccC------CccccCCCCCCeEEccCCcccccCccccc
Q 041953          203 LYLGGNRLQG-EIPRESGNLAELELMSLSENELQGAI------PREWGNLTGLGILQLSDNFLTGITPSSIY  267 (279)
Q Consensus       203 L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~i~~~~------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  267 (279)
                      |.+.+-.+.. ..-..+..+++|+.||+|........      -+....+|+|+.||+++..+....-+.+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll  271 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL  271 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH
Confidence            9988877653 12235668999999999987654221      12234689999999999888776554443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.31  E-value=9.9e-05  Score=58.40  Aligned_cols=104  Identities=22%  Similarity=0.265  Sum_probs=51.9

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCC--cccCCCCccccCCCCCcEEEcccCccccc-CCccCCCCCCCcE
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCN--RLSGSIPSAIFTTYTLKYVSFRKNQLSGA-FPSFAFNTSSLQY  129 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~--~i~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~  129 (279)
                      ..+..+++.+..++.  -..|-.+++|+.|.++.|  .+.+.++.....+|+|++++++.|++... -...+..+.+|..
T Consensus        43 ~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   43 VELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             cchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            345555555555542  122334566777777776  44433444444456777777777766520 0112334455666


Q ss_pred             EEeecccccc--ccChhhhcCCCCCcEEEee
Q 041953          130 LDFGFNTLSG--EIPANICSNLPFLEYLALS  158 (279)
Q Consensus       130 L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~  158 (279)
                      |++.+|..+.  ..-..+|.-+++|++|+-.
T Consensus       121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            6666665442  1112234445555555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.09  E-value=0.00022  Score=56.50  Aligned_cols=109  Identities=17%  Similarity=0.128  Sum_probs=63.8

Q ss_pred             CcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccC--cccccCCccCCCCCCCcEEEeeccccccccChhh-
Q 041953           69 IPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKN--QLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANI-  145 (279)
Q Consensus        69 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n--~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-  145 (279)
                      +......+..|+.+.+.+..++.  -..|..+++|+.|.++.|  .+.+.++.....+|+|+++++++|++..  +..+ 
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~  110 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLR  110 (260)
T ss_pred             cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccc
Confidence            33444445666666666666541  123556778888888888  5554555555566888888888888752  1111 


Q ss_pred             -hcCCCCCcEEEeecccccccCC---ccCCCCccCcEEec
Q 041953          146 -CSNLPFLEYLALSQNMFHGGIP---SALSNCAYLQRLGL  181 (279)
Q Consensus       146 -~~~~~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l  181 (279)
                       ...+.+|..|++.+|..+...-   ..+..+++|++|+-
T Consensus       111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence             2456667777777776542100   12334555555543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.64  E-value=5.5e-05  Score=60.52  Aligned_cols=81  Identities=21%  Similarity=0.171  Sum_probs=38.4

Q ss_pred             CCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCC-ccCCCCccCcEEe
Q 041953          102 TLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIP-SALSNCAYLQRLG  180 (279)
Q Consensus       102 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~  180 (279)
                      +.+.|+..+|.+..+  .....++.|+.|.|+-|++. .+..  +..+.+|++|+|..|.|.+... ..+.++++|+.|.
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            445555555554321  23335555555555555554 3322  2345555555555555542111 2344455555555


Q ss_pred             ccCCccc
Q 041953          181 LSSNDFS  187 (279)
Q Consensus       181 l~~n~~~  187 (279)
                      |..|...
T Consensus        95 L~ENPCc  101 (388)
T KOG2123|consen   95 LDENPCC  101 (388)
T ss_pred             hccCCcc
Confidence            5555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.60  E-value=4.8e-05  Score=60.84  Aligned_cols=101  Identities=27%  Similarity=0.238  Sum_probs=70.1

Q ss_pred             CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccC-CccCCCCCCCcEE
Q 041953           52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAF-PSFAFNTSSLQYL  130 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L  130 (279)
                      ...++.|+..+|++..+.  ....|+.|+.|.++-|+|+..  ..+..|.+|+.|+|..|.|.... -..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            346888899999887432  244688999999999999733  34788899999999999887321 1346788888888


Q ss_pred             EeeccccccccChh----hhcCCCCCcEEE
Q 041953          131 DFGFNTLSGEIPAN----ICSNLPFLEYLA  156 (279)
Q Consensus       131 ~l~~n~~~~~~~~~----~~~~~~~L~~L~  156 (279)
                      .+..|+=.+..+..    +..-+|+|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            88877655443332    234456666554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.19  E-value=0.00034  Score=62.14  Aligned_cols=38  Identities=26%  Similarity=0.241  Sum_probs=17.1

Q ss_pred             CCCCcEEEeeccc-cccccChhhhcCCCCCcEEEeeccc
Q 041953          124 TSSLQYLDFGFNT-LSGEIPANICSNLPFLEYLALSQNM  161 (279)
Q Consensus       124 l~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~  161 (279)
                      +++|++|.+..+. ++......+...++.|++|+++++.
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            4455555544444 2322222333445555555555443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.75  E-value=0.0042  Score=29.52  Aligned_cols=12  Identities=58%  Similarity=0.581  Sum_probs=6.4

Q ss_pred             CCeEEccCCccc
Q 041953          248 LGILQLSDNFLT  259 (279)
Q Consensus       248 L~~L~l~~n~l~  259 (279)
                      |++|++++|.++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            455555555555

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.48  E-value=0.0055  Score=29.12  Aligned_cols=19  Identities=42%  Similarity=0.732  Sum_probs=9.3

Q ss_pred             CCEEeccCCcCcccCCcccc
Q 041953          224 LELMSLSENELQGAIPREWG  243 (279)
Q Consensus       224 L~~L~l~~n~i~~~~~~~~~  243 (279)
                      |++|++++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 3343343

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.29  E-value=0.00077  Score=59.89  Aligned_cols=111  Identities=20%  Similarity=0.103  Sum_probs=60.6

Q ss_pred             CCCCCEEEccCCcccCC--CCccccCCCCCcEEEcccC-cccccC----CccCCCCCCCcEEEeeccc-cccccChhhhc
Q 041953           76 LSSLQSLNLSCNRLSGS--IPSAIFTTYTLKYVSFRKN-QLSGAF----PSFAFNTSSLQYLDFGFNT-LSGEIPANICS  147 (279)
Q Consensus        76 l~~L~~L~l~~~~i~~~--~~~~~~~~~~L~~L~l~~n-~~~~~~----~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~  147 (279)
                      ++.|+.+.+..+.-...  .......+++|+.|+++++ ......    ......+++|+.++++++. +....-..+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            56777777776632212  2234456777888887763 111111    1223345777777777776 44222333333


Q ss_pred             CCCCCcEEEeeccc-ccccCC-ccCCCCccCcEEeccCCcc
Q 041953          148 NLPFLEYLALSQNM-FHGGIP-SALSNCAYLQRLGLSSNDF  186 (279)
Q Consensus       148 ~~~~L~~L~l~~n~-l~~~~~-~~l~~l~~L~~L~l~~n~~  186 (279)
                      .+++|++|.+.++. +++..- .....++.|++|+++++..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            46778887766665 332211 2234466688888876653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.93  E-value=0.039  Score=24.29  Aligned_cols=13  Identities=38%  Similarity=0.580  Sum_probs=4.7

Q ss_pred             CCCEEeccCCcCc
Q 041953          223 ELELMSLSENELQ  235 (279)
Q Consensus       223 ~L~~L~l~~n~i~  235 (279)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444555555443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.73  E-value=0.0069  Score=46.44  Aligned_cols=79  Identities=16%  Similarity=0.090  Sum_probs=31.7

Q ss_pred             CcEEeccCCcccccCCcccCCCCCccEEEccCccccc-ccCccC-CCCCCCCEEeccCC-cCcccCCccccCCCCCCeEE
Q 041953          176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQG-EIPRES-GNLAELELMSLSEN-ELQGAIPREWGNLTGLGILQ  252 (279)
Q Consensus       176 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~-~~~~~~-~~~~~L~~L~l~~n-~i~~~~~~~~~~~~~L~~L~  252 (279)
                      ++.++.+++.|....-+.+.+++.++.+.+.+|.-.+ ..-..+ +..++|+.|+|++| +|++..-..+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            3444444444443333344444444444444443110 000000 12245555555544 33333333444445555544


Q ss_pred             cc
Q 041953          253 LS  254 (279)
Q Consensus       253 l~  254 (279)
                      +.
T Consensus       183 l~  184 (221)
T KOG3864|consen  183 LY  184 (221)
T ss_pred             hc
Confidence            44

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.38  E-value=0.064  Score=26.44  Aligned_cols=21  Identities=33%  Similarity=0.544  Sum_probs=11.4

Q ss_pred             CCCCeEEccCCcccccCcccc
Q 041953          246 TGLGILQLSDNFLTGITPSSI  266 (279)
Q Consensus       246 ~~L~~L~l~~n~l~~~~~~~~  266 (279)
                      ++|+.|++++|.+..+++..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            445555666665555544443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.38  E-value=0.064  Score=26.44  Aligned_cols=21  Identities=33%  Similarity=0.544  Sum_probs=11.4

Q ss_pred             CCCCeEEccCCcccccCcccc
Q 041953          246 TGLGILQLSDNFLTGITPSSI  266 (279)
Q Consensus       246 ~~L~~L~l~~n~l~~~~~~~~  266 (279)
                      ++|+.|++++|.+..+++..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            445555666665555544443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.18  E-value=0.024  Score=27.46  Aligned_cols=21  Identities=33%  Similarity=0.408  Sum_probs=11.0

Q ss_pred             CCCCeEEccCCcccccCcccc
Q 041953          246 TGLGILQLSDNFLTGITPSSI  266 (279)
Q Consensus       246 ~~L~~L~l~~n~l~~~~~~~~  266 (279)
                      ++|+.|+|++|.+++....++
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            456666666666665544443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.91  E-value=0.011  Score=45.27  Aligned_cols=81  Identities=12%  Similarity=0.080  Sum_probs=45.7

Q ss_pred             eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccC-CCCcccc-CCCCCcEEEcccCc-ccccCCccCCCCCCCcEE
Q 041953           54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSG-SIPSAIF-TTYTLKYVSFRKNQ-LSGAFPSFAFNTSSLQYL  130 (279)
Q Consensus        54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~~~-~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L  130 (279)
                      .++.++-+++.|..+--..+..++.++.|.+.+|+--+ ..-+.+. -.++|+.|++++|. |+..--..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            57888888888776666677777777878887775321 1111111 23566666666553 332222334445555555


Q ss_pred             Eeec
Q 041953          131 DFGF  134 (279)
Q Consensus       131 ~l~~  134 (279)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            4443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.90  E-value=0.00015  Score=64.00  Aligned_cols=181  Identities=24%  Similarity=0.267  Sum_probs=87.3

Q ss_pred             EEEEEcCCCCccc----cCcccccCCCCCCEEEccCCcccCCCCc----cccCC-CCCcEEEcccCcccc----cCCccC
Q 041953           55 VTVLNISRLNLTG----TIPSQLGNLSSLQSLNLSCNRLSGSIPS----AIFTT-YTLKYVSFRKNQLSG----AFPSFA  121 (279)
Q Consensus        55 l~~L~l~~~~l~~----~~~~~~~~l~~L~~L~l~~~~i~~~~~~----~~~~~-~~L~~L~l~~n~~~~----~~~~~~  121 (279)
                      +..+.+.+|.+..    .+...+.....|+.|++++|.+.+....    .+... ..+++|++..|.++.    .+...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            5666777776653    2234455566777777777776632211    12222 345566666666542    222344


Q ss_pred             CCCCCCcEEEeecccccc----ccChhh---hcCCCCCcEEEeeccccccc----CCccCCCCcc-CcEEeccCCccccc
Q 041953          122 FNTSSLQYLDFGFNTLSG----EIPANI---CSNLPFLEYLALSQNMFHGG----IPSALSNCAY-LQRLGLSSNDFSGV  189 (279)
Q Consensus       122 ~~l~~L~~L~l~~n~~~~----~~~~~~---~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~-L~~L~l~~n~~~~~  189 (279)
                      .....++.++++.|.+..    .++...   +....++++|.+.+|.++..    +...+...+. +.++++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            456666666766666531    011111   12345566666666655421    1112223333 44466666655432


Q ss_pred             ----CCcccCCC-CCccEEEccCccccccc----CccCCCCCCCCEEeccCCcCc
Q 041953          190 ----VPKEICNL-TKLKGLYLGGNRLQGEI----PRESGNLAELELMSLSENELQ  235 (279)
Q Consensus       190 ----~~~~l~~~-~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~i~  235 (279)
                          ..+.+... ..++.++++.|.++...    +..+...+.++.+.+++|.+.
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence                11222222 34556666666554322    222333445555666655554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.44  E-value=0.11  Score=25.52  Aligned_cols=21  Identities=33%  Similarity=0.506  Sum_probs=11.5

Q ss_pred             CCCcEEEeeccccccccChhhh
Q 041953          125 SSLQYLDFGFNTLSGEIPANIC  146 (279)
Q Consensus       125 ~~L~~L~l~~n~~~~~~~~~~~  146 (279)
                      ++|++|++++|.+. .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45555666666555 5555443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.44  E-value=0.11  Score=25.52  Aligned_cols=21  Identities=33%  Similarity=0.506  Sum_probs=11.5

Q ss_pred             CCCcEEEeeccccccccChhhh
Q 041953          125 SSLQYLDFGFNTLSGEIPANIC  146 (279)
Q Consensus       125 ~~L~~L~l~~n~~~~~~~~~~~  146 (279)
                      ++|++|++++|.+. .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45555666666555 5555443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.81  E-value=0.00037  Score=61.55  Aligned_cols=183  Identities=25%  Similarity=0.190  Sum_probs=111.1

Q ss_pred             CCEEEccCCcccCC----CCccccCCCCCcEEEcccCcccccC----CccCCCC-CCCcEEEeecccccc----ccChhh
Q 041953           79 LQSLNLSCNRLSGS----IPSAIFTTYTLKYVSFRKNQLSGAF----PSFAFNT-SSLQYLDFGFNTLSG----EIPANI  145 (279)
Q Consensus        79 L~~L~l~~~~i~~~----~~~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~l-~~L~~L~l~~n~~~~----~~~~~~  145 (279)
                      +..+.+.+|.+.+.    +...+...+.|..|++++|.+....    -..+... ..+++|++..|.+..    .+...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            67778888877643    2234566778888999988876221    1223333 566777777776653    223333


Q ss_pred             hcCCCCCcEEEeecccccc----cCCccCC----CCccCcEEeccCCcccccC----CcccCCCCC-ccEEEccCccccc
Q 041953          146 CSNLPFLEYLALSQNMFHG----GIPSALS----NCAYLQRLGLSSNDFSGVV----PKEICNLTK-LKGLYLGGNRLQG  212 (279)
Q Consensus       146 ~~~~~~L~~L~l~~n~l~~----~~~~~l~----~l~~L~~L~l~~n~~~~~~----~~~l~~~~~-L~~L~l~~n~~~~  212 (279)
                       .....++.++++.|.+..    ..+..+.    ...++++|.+.+|.++...    ...+...+. +..+++..|.+.+
T Consensus       169 -~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  169 -EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             -hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence             346678888888887631    1222233    3566788888887765211    122333344 6668888777653


Q ss_pred             c----cCccCCCC-CCCCEEeccCCcCcccC----CccccCCCCCCeEEccCCcccccC
Q 041953          213 E----IPRESGNL-AELELMSLSENELQGAI----PREWGNLTGLGILQLSDNFLTGIT  262 (279)
Q Consensus       213 ~----~~~~~~~~-~~L~~L~l~~n~i~~~~----~~~~~~~~~L~~L~l~~n~l~~~~  262 (279)
                      .    ....+..+ ..++.++++.|+++...    .+.+..++.++.+.+++|++....
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~  306 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYG  306 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHH
Confidence            2    22333444 67788888888887543    344566778888888888876543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=88.48  E-value=0.43  Score=41.00  Aligned_cols=134  Identities=22%  Similarity=0.191  Sum_probs=78.3

Q ss_pred             CCeEEEEEcCCCCcc-cc-CcccccCCCCCCEEEccCCc-ccCCCCccc-cCCCCCcEEEcccCccc--ccCCccCCCCC
Q 041953           52 SHRVTVLNISRLNLT-GT-IPSQLGNLSSLQSLNLSCNR-LSGSIPSAI-FTTYTLKYVSFRKNQLS--GAFPSFAFNTS  125 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~-~~-~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~-~~~~~L~~L~l~~n~~~--~~~~~~~~~l~  125 (279)
                      +.+++++..+++.-. .. +..--.+..+|+.|.+.+++ +++.....+ ..++.|+.+++..+...  +.+...-.+++
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            557788888876532 11 11222356788888888875 332222222 35677888888877543  12223344678


Q ss_pred             CCcEEEeeccccccccC----hhhhcCCCCCcEEEeeccccc-ccCCccCCCCccCcEEeccCCc
Q 041953          126 SLQYLDFGFNTLSGEIP----ANICSNLPFLEYLALSQNMFH-GGIPSALSNCAYLQRLGLSSND  185 (279)
Q Consensus       126 ~L~~L~l~~n~~~~~~~----~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~  185 (279)
                      .|+.+.++++....+..    ......+..+..+.+.++... +...+.+..+++|+.+++-++.
T Consensus       373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            88888888775432221    111134567888888877643 2333456677788887776654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.37  E-value=0.0094  Score=46.87  Aligned_cols=85  Identities=21%  Similarity=0.173  Sum_probs=68.6

Q ss_pred             CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953           52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD  131 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  131 (279)
                      ..+++.||++.+.+. .....|+-+..+..|+++.|.+. ..|..+.....+..+++.+|+.. ..|.++...+.+++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            458899999998876 44556666778888999998887 77888888888888888888877 7788888999999998


Q ss_pred             eecccccc
Q 041953          132 FGFNTLSG  139 (279)
Q Consensus       132 l~~n~~~~  139 (279)
                      +-.+.+..
T Consensus       118 ~k~~~~~~  125 (326)
T KOG0473|consen  118 QKKTEFFR  125 (326)
T ss_pred             hccCcchH
Confidence            88887653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.56  E-value=0.0071  Score=47.52  Aligned_cols=85  Identities=19%  Similarity=0.194  Sum_probs=45.2

Q ss_pred             cCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCE
Q 041953          147 SNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELEL  226 (279)
Q Consensus       147 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  226 (279)
                      ..+.+.+.||++.|.+- .+...++.++.+..++++.|.+. ..|..++....++.+++-.|... ..|.+++..+.++.
T Consensus        39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK  115 (326)
T ss_pred             hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence            44556666666666554 33344555555556666655555 44444444444555555444443 44555555555555


Q ss_pred             EeccCCcC
Q 041953          227 MSLSENEL  234 (279)
Q Consensus       227 L~l~~n~i  234 (279)
                      +++..+.+
T Consensus       116 ~e~k~~~~  123 (326)
T KOG0473|consen  116 NEQKKTEF  123 (326)
T ss_pred             hhhccCcc
Confidence            55555543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=87.43  E-value=0.19  Score=43.11  Aligned_cols=159  Identities=21%  Similarity=0.134  Sum_probs=84.7

Q ss_pred             CCCCCcEEEcccCcccccCC--ccCCCCCCCcEEEeeccccccccC-hhhhcCCCCCcEEEeecccc-cccCCccC-CCC
Q 041953           99 TTYTLKYVSFRKNQLSGAFP--SFAFNTSSLQYLDFGFNTLSGEIP-ANICSNLPFLEYLALSQNMF-HGGIPSAL-SNC  173 (279)
Q Consensus        99 ~~~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~L~~L~l~~n~l-~~~~~~~l-~~l  173 (279)
                      .++.+..+++.+|..-....  ..-..+..|+++..+++...++.+ ..+-.+.++|+.+.+++++. ++.--..+ .++
T Consensus       266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~  345 (483)
T KOG4341|consen  266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNC  345 (483)
T ss_pred             cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCC
Confidence            34556677766664221110  112345677777776654332222 22335667888888877753 21111122 235


Q ss_pred             ccCcEEeccCCccc--ccCCcccCCCCCccEEEccCcccc-ccc----CccCCCCCCCCEEeccCCcCc-ccCCccccCC
Q 041953          174 AYLQRLGLSSNDFS--GVVPKEICNLTKLKGLYLGGNRLQ-GEI----PRESGNLAELELMSLSENELQ-GAIPREWGNL  245 (279)
Q Consensus       174 ~~L~~L~l~~n~~~--~~~~~~l~~~~~L~~L~l~~n~~~-~~~----~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~  245 (279)
                      +.|+.+++..+...  ..+...-.+++.|+.+.++.|... +..    ...-..+..++.+.+++++.. +..-+.+..+
T Consensus       346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c  425 (483)
T KOG4341|consen  346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC  425 (483)
T ss_pred             hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhC
Confidence            66777777666532  112222345677888888777532 210    112234566777777777653 2333455667


Q ss_pred             CCCCeEEccCCc
Q 041953          246 TGLGILQLSDNF  257 (279)
Q Consensus       246 ~~L~~L~l~~n~  257 (279)
                      ++|+.+++-++.
T Consensus       426 ~~Leri~l~~~q  437 (483)
T KOG4341|consen  426 RNLERIELIDCQ  437 (483)
T ss_pred             cccceeeeechh
Confidence            777777776653

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=81.17  E-value=1.4  Score=21.80  Aligned_cols=16  Identities=44%  Similarity=0.453  Sum_probs=10.5

Q ss_pred             CCCCeEEccCCccccc
Q 041953          246 TGLGILQLSDNFLTGI  261 (279)
Q Consensus       246 ~~L~~L~l~~n~l~~~  261 (279)
                      .+|+.|++++|+|+.+
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            4667777777776554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	279
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-16
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-16
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-14

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 97/253 (38%), Gaps = 51/253 (20%)
Query: 65  LTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNT 124
           L G IP                    G IPS +     L ++S   N+L+G  P +    
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 125 SSLQYLDFGFNTLSGEIPANI--CSNLPFLEYLALSQNMFHGGIPSAL------------ 170
            +L  L    N+ SG IPA +  C +L +L+   L+ N+F+G IP+A+            
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLD---LNTNLFNGTIPAAMFKQSGKIAANFI 567
Query: 171 --SNCAYLQRLGLSSN--------DFSGVVPKEI--------CNLTK------------- 199
                 Y++  G+           +F G+  +++        CN+T              
Sbjct: 568 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 627
Query: 200 ---LKGLYLGGNRLQGEIPRESGXXXXXXXXXXXXXXXQGAIPREWGNLTGLGILQLSDN 256
              +  L +  N L G IP+E G                G+IP E G+L GL IL LS N
Sbjct: 628 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 687
Query: 257 FLTGITPSSIYKL 269
            L G  P ++  L
Sbjct: 688 KLDGRIPQAMSAL 700

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 97/253 (38%), Gaps = 51/253 (20%)
Query: 65  LTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNT 124
           L G IP                    G IPS +     L ++S   N+L+G  P +    
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 125 SSLQYLDFGFNTLSGEIPANI--CSNLPFLEYLALSQNMFHGGIPSAL------------ 170
            +L  L    N+ SG IPA +  C +L +L+   L+ N+F+G IP+A+            
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLD---LNTNLFNGTIPAAMFKQSGKIAANFI 570
Query: 171 --SNCAYLQRLGLSSN--------DFSGVVPKEI--------CNLTK------------- 199
                 Y++  G+           +F G+  +++        CN+T              
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630
Query: 200 ---LKGLYLGGNRLQGEIPRESGXXXXXXXXXXXXXXXQGAIPREWGNLTGLGILQLSDN 256
              +  L +  N L G IP+E G                G+IP E G+L GL IL LS N
Sbjct: 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690
Query: 257 FLTGITPSSIYKL 269
            L G  P ++  L
Sbjct: 691 KLDGRIPQAMSAL 703

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 94/211 (44%), Gaps = 13/211 (6%)
Query: 11  DRDALLALKAHITHDPTNFFAKNWNTSTPVCN--WTGVTCDV--HSHRVTVLNISRLNLT 66
           D+ ALL +K  +  +PT     +W  +T  CN  W GV CD    ++RV  L++S LNL 
Sbjct: 7   DKQALLQIKKDL-GNPTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP 63
Query: 67  GTIPXXXXXXXXXXXXXXXX---XXXXGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFN 123
              P                       G IP AI     L Y+      +SGA P F   
Sbjct: 64  KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123
Query: 124 TSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYL-QRLGLS 182
             +L  LDF +N LSG +P +I S+LP L  +    N   G IP +  + + L   + +S
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 183 SNDFSGVVPKEICNLTKLKGLYLGGNRLQGE 213
            N  +G +P    NL  L  + L  N L+G+
Sbjct: 183 RNRLTGKIPPTFANL-NLAFVDLSRNMLEGD 212

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	279
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-69
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-46
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-66
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-60
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-59
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-55
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-51
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-39
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-32
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-32
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-36
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-34
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-31
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-25
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	8e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  215 bits (550), Expect = 4e-69
 Identities = 77/287 (26%), Positives = 117/287 (40%), Gaps = 36/287 (12%)

Query: 10  TDRDALLALKAHITHDPTNFFAKNWNTSTPVCN--WTGVTCDV--HSHRVTVLNISRLNL 65
            D+ ALL +K  +  +PT     +W  +T  CN  W GV CD    ++RV  L++S LNL
Sbjct: 6   QDKQALLQIKKDLG-NPTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62

Query: 66  ---------------------------TGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIF 98
                                       G IP  +  L+ L  L ++   +SG+IP  + 
Sbjct: 63  PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122

Query: 99  TTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS 158
              TL  + F  N LSG  P    +  +L  + F  N +SG IP +  S       + +S
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182

Query: 159 QNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES 218
           +N   G IP   +N   L  + LS N   G       +    + ++L  N L  ++  + 
Sbjct: 183 RNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KV 240

Query: 219 GNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSS 265
           G    L  + L  N + G +P+    L  L  L +S N L G  P  
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  155 bits (394), Expect = 9e-46
 Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 5/185 (2%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFT-TYTLKYVSFRKNQLS 114
             L+ S   L+GT+P  + +L +L  +    NR+SG+IP +  + +     ++  +N+L+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCA 174
           G  P   F   +L ++D   N L G+       +    + + L++N     +   +    
Sbjct: 188 GKIPP-TFANLNLAFVDLSRNMLEGDASVLF-GSDKNTQKIHLAKNSLAFDLGK-VGLSK 244

Query: 175 YLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENEL 234
            L  L L +N   G +P+ +  L  L  L +  N L GEIP + GNL   ++ + + N+ 
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC 303

Query: 235 QGAIP 239
               P
Sbjct: 304 LCGSP 308

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  218 bits (557), Expect = 5e-66
 Identities = 70/276 (25%), Positives = 118/276 (42%), Gaps = 17/276 (6%)

Query: 3   ANTSTITTDRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISR 62
           + + ++  +   L++ K  +          +W+++   C + GVTC     +VT +++S 
Sbjct: 5   SPSQSLYREIHQLISFKDVLPDKN---LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSS 59

Query: 63  LNLT---GTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPS 119
             L      + S L +L+ L+SL LS + ++GS+      + +L  +   +N LSG   +
Sbjct: 60  KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTT 118

Query: 120 FA--FNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSAL---SNCA 174
                + S L++L+   NTL      +    L  LE L LS N   G           C 
Sbjct: 119 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178

Query: 175 YLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENEL 234
            L+ L +S N  SG V   +     L+ L +  N     IP   G+ + L+ + +S N+L
Sbjct: 179 ELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKL 235

Query: 235 QGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL 270
            G   R     T L +L +S N   G  P    K L
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSL 271

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  203 bits (520), Expect = 1e-60
 Identities = 81/222 (36%), Positives = 110/222 (49%), Gaps = 4/222 (1%)

Query: 56  TVLNISRLNLTGTIPSQLGNLS-SLQSLNLSCNRLSGSIPSAIFTTY--TLKYVSFRKNQ 112
            VL++S    +G +P  L NLS SL +L+LS N  SG I   +      TL+ +  + N 
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405

Query: 113 LSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSN 172
            +G  P    N S L  L   FN LSG IP+++  +L  L  L L  NM  G IP  L  
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMY 464

Query: 173 CAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSEN 232
              L+ L L  ND +G +P  + N T L  + L  NRL GEIP+  G L  L ++ LS N
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524

Query: 233 ELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK 274
              G IP E G+   L  L L+ N   G  P++++K    I 
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  200 bits (511), Expect = 2e-59
 Identities = 78/223 (34%), Positives = 106/223 (47%), Gaps = 7/223 (3%)

Query: 51  HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRK 110
               +  L++S  N +  IP  LG+ S+LQ L++S N+LSG    AI T   LK ++   
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256

Query: 111 NQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSAL 170
           NQ  G  P       SLQYL    N  +GEIP  +      L  L LS N F+G +P   
Sbjct: 257 NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314

Query: 171 SNCAYLQRLGLSSNDFSGVVPKE-ICNLTKLKGLYLGGNRLQGEIPRESGNL-AELELMS 228
            +C+ L+ L LSSN+FSG +P + +  +  LK L L  N   GE+P    NL A L  + 
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374

Query: 229 LSENELQGAIPREWGN--LTGLGILQLSDNFLTGITPSSIYKL 269
           LS N   G I           L  L L +N  TG  P ++   
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  190 bits (484), Expect = 1e-55
 Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 11/228 (4%)

Query: 53  HRVTVLNISRLNLTGTIPSQL---GNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFR 109
           + + VL++S  +++G              L+ L +S N++SG +  +      L+++   
Sbjct: 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN--LEFLDVS 208

Query: 110 KNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSA 169
            N  S   P    + S+LQ+LD   N LSG+    I S    L+ L +S N F G IP  
Sbjct: 209 SNNFSTGIPFL-GDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPP- 265

Query: 170 LSNCAYLQRLGLSSNDFSGVVPKEIC-NLTKLKGLYLGGNRLQGEIPRESGNLAELELMS 228
                 LQ L L+ N F+G +P  +      L GL L GN   G +P   G+ + LE ++
Sbjct: 266 -LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324

Query: 229 LSENELQGAIPREW-GNLTGLGILQLSDNFLTGITPSSIYKLLFSIKF 275
           LS N   G +P +    + GL +L LS N  +G  P S+  L  S+  
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  178 bits (453), Expect = 3e-51
 Identities = 58/216 (26%), Positives = 91/216 (42%), Gaps = 7/216 (3%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
             L +   +LTG IPS L N ++L  ++LS NRL+G IP  I     L  +    N  SG
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
             P+   +  SL +LD   N  +G IPA +           ++ N   G     + N   
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS-----GKIAANFIAGKRYVYIKNDGM 583

Query: 176 LQRLGLSSND--FSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENE 233
            +    + N   F G+  +++  L+      +      G       N   +  + +S N 
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643

Query: 234 LQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
           L G IP+E G++  L IL L  N ++G  P  +  L
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  169 bits (431), Expect = 4e-48
 Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 7/212 (3%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
            +L +S  + +G IP++LG+  SL  L+L+ N  +G+IP+A+F            N ++G
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAG 572

Query: 116 AFPSFAFNTSSLQYLDFGFNT--LSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNC 173
               +  N    +      N     G     +   L       ++  ++ G       N 
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNN 631

Query: 174 AYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENE 233
             +  L +S N  SG +PKEI ++  L  L LG N + G IP E G+L  L ++ LS N+
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691

Query: 234 LQGAIPREWGNLTGLGILQLSDNFLTGITPSS 265
           L G IP+    LT L  + LS+N L+G  P  
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  104 bits (261), Expect = 2e-25
 Identities = 40/137 (29%), Positives = 54/137 (39%), Gaps = 25/137 (18%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS 114
               NI+     G       N  S+  L++S N LSG IP  I                 
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI----------------- 652

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCA 174
                   +   L  L+ G N +SG IP  +  +L  L  L LS N   G IP A+S   
Sbjct: 653 -------GSMPYLFILNLGHNDISGSIPDEV-GDLRGLNILDLSSNKLDGRIPQAMSALT 704

Query: 175 YLQRLGLSSNDFSGVVP 191
            L  + LS+N+ SG +P
Sbjct: 705 MLTEIDLSNNNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.5 bits (215), Expect = 3e-19
 Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 25/114 (21%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS 114
           +  L++S   L+G IP ++G++  L  LNL  N +SGSIP                    
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD------------------- 674

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPS 168
                   +   L  LD   N L G IP  + S L  L  + LS N   G IP 
Sbjct: 675 ----EVG-DLRGLNILDLSSNKLDGRIPQAM-SALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.5 bits (158), Expect = 6e-12
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 6/105 (5%)

Query: 176 LQRLGLSSNDFS---GVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSEN 232
           +  + LSS   +     V   + +LT L+ L+L  + + G +       A L  + LS N
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRN 110

Query: 233 ELQGAIPREW--GNLTGLGILQLSDNFLTGITPSSIYKLLFSIKF 275
            L G +      G+ +GL  L +S N L      S    L S++ 
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  144 bits (366), Expect = 1e-39
 Identities = 45/275 (16%), Positives = 86/275 (31%), Gaps = 37/275 (13%)

Query: 5   TSTITTDRDALLALKAHITHDPTNFF------AKNWNTSTPVCNWT---GVTCDVHSHRV 55
           T+    D  AL  +   +     +          NWN +  +  W    GV+ + +  RV
Sbjct: 25  TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNG-RV 83

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
           T L++     +G +P  +G L+ L+ L L  +    +                       
Sbjct: 84  TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFG------------------ 125

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICS-NLPFLEYLALSQNMFHGGIPSALSNCA 174
             P       S +                    +   L    ++ +     I  +     
Sbjct: 126 --PKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183

Query: 175 YLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENEL 234
              ++G  SN+ +  V K +  LTKL+  Y+G +    E   E+      E     +   
Sbjct: 184 KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-- 240

Query: 235 QGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
                 +W NL  L  +++ +       P+ +  L
Sbjct: 241 ---EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  140 bits (354), Expect = 5e-38
 Identities = 35/235 (14%), Positives = 79/235 (33%), Gaps = 19/235 (8%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRL--------SGSIPSAIFTTYTLKYVS 107
           T + +        +P+ L  L  +Q +N++CNR              +       ++ + 
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 108 FRKNQL-SGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGI 166
              N L +    +       L  L+  +N L G++PA    +   L  L L+ N      
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FG-SEIKLASLNLAYNQITEIP 369

Query: 167 PSALSNCAYLQRLGLSSNDFSGVVPK-EICNLTKLKGLYLGGNRLQG-------EIPRES 218
            +       ++ L  + N    +    +  +++ +  +    N +          +    
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429

Query: 219 GNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSI 273
                +  ++LS N++       +   + L  + L  N LT I  +S+     + 
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  125 bits (315), Expect = 1e-32
 Identities = 27/218 (12%), Positives = 66/218 (30%), Gaps = 18/218 (8%)

Query: 58  LNISRLNLTGTIPSQLG--NLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
               R++   T        + S L    ++ +    SI  +   T     +    N ++ 
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
                    + L+    G +    E            E         +        N   
Sbjct: 198 -VSKAVMRLTKLRQFYMGNSPFVAENI------CEAWENENSEYAQQYKTEDLKWDNLKD 250

Query: 176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRL--------QGEIPRESGNLAELELM 227
           L  + + +      +P  +  L +++ + +  NR           +   ++    +++++
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310

Query: 228 SLSENELQ-GAIPREWGNLTGLGILQLSDNFLTGITPS 264
            +  N L+   +      +  LG+L+   N L G  P+
Sbjct: 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA 348

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  123 bits (311), Expect = 4e-32
 Identities = 40/235 (17%), Positives = 78/235 (33%), Gaps = 26/235 (11%)

Query: 56  TVLNISRLNLTG-------TIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSF 108
           + ++ S   +          +        ++ S+NLS N++S        T   L  ++ 
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464

Query: 109 RKNQLSG-------AFPSFAFNTSSLQYLDFGFNTLSGEIPANIC-SNLPFLEYLALSQN 160
             N L+               NT  L  +D  FN L+  +  +   + LP+L  + LS N
Sbjct: 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYN 523

Query: 161 MFHGGIPSALSNCAYLQRLGL------SSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEI 214
            F    P+   N + L+  G+        N      P+ I     L  L +G N ++  +
Sbjct: 524 SF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-V 581

Query: 215 PRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
             +      + ++ + +N                G+  L  +    I       +
Sbjct: 582 NEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDI 634

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  119 bits (301), Expect = 1e-30
 Identities = 46/238 (19%), Positives = 82/238 (34%), Gaps = 29/238 (12%)

Query: 56  TVLNISRLNLTGTIPS--QLGNLSSLQSLNLSCNRLSG-------SIPSAIFTTYTLKYV 106
             L+ +   L   IP+     ++S + +++ S N +          +    F    +  +
Sbjct: 380 ENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438

Query: 107 SFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANIC-------SNLPFLEYLALSQ 159
           +   NQ+S          S L  ++   N L+  IP N          N   L  + L  
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYLLTSIDLRF 497

Query: 160 NMFHGGIPS-ALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLG------GNRLQG 212
           N           +   YL  + LS N FS   P +  N + LKG  +       GNR   
Sbjct: 498 NKLTKLSDDFRATTLPYLVGIDLSYNSFSKF-PTQPLNSSTLKGFGIRNQRDAQGNRTLR 556

Query: 213 EIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL 270
           E P        L  + +  N+++  +  +      + +L + DN    I  S +   +
Sbjct: 557 EWPEGITLCPSLTQLQIGSNDIRK-VNEK--ITPNISVLDIKDNPNISIDLSYVCPYI 611

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 92.8 bits (231), Expect = 2e-21
 Identities = 21/154 (13%), Positives = 44/154 (28%), Gaps = 8/154 (5%)

Query: 123 NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGG----IPSALSNCAYLQR 178
           +   +  L       SG +P  I   L  LE LAL  +          P  +S     ++
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 179 LGLSSNDFSGVVPKEI--CNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQG 236
                  +           + + L    +  +  Q  I + S    +   +    N +  
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197

Query: 237 AIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL 270
            + +    LT L    + ++          ++  
Sbjct: 198 -VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  143 bits (362), Expect = 3e-39
 Identities = 50/223 (22%), Positives = 90/223 (40%), Gaps = 4/223 (1%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLS--GSIPSAIFTTYTLKYVSFRKNQL 113
           ++  ++  +  G       +L SL+ L+LS N LS  G    + F T +LKY+    N +
Sbjct: 326 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 114 SGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNC 173
                +F      L++LDF  + L      ++  +L  L YL +S            +  
Sbjct: 386 ITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 174 AYLQRLGLSSNDFSGVVPKEI-CNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSEN 232
           + L+ L ++ N F      +I   L  L  L L   +L+   P    +L+ L+++++S N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504

Query: 233 ELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKF 275
                    +  L  L +L  S N +       +     S+ F
Sbjct: 505 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 547

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  123 bits (312), Expect = 2e-32
 Identities = 45/216 (20%), Positives = 74/216 (34%), Gaps = 10/216 (4%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS 114
              L++S   L         +   LQ L+LS   +      A  +   L  +    N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 115 GAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGG-IPSALSN 172
                 AF   SSLQ L      L+      I  +L  L+ L ++ N+     +P   SN
Sbjct: 90  S-LALGAFSGLSSLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 173 CAYLQRLGLSSNDFSGVVPKEICNLTKLK----GLYLGGNRLQGEIPRESGNLAELELMS 228
              L+ L LSSN    +   ++  L ++      L L  N +   I   +     L  ++
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLT 206

Query: 229 LSENELQGAIPREW-GNLTGLGILQLSDNFLTGITP 263
           L  N     + +     L GL + +L          
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  121 bits (305), Expect = 2e-31
 Identities = 45/214 (21%), Positives = 81/214 (37%), Gaps = 5/214 (2%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKNQLS 114
             L++S   +  T+ S    L  L+ L+   + L      ++F +   L Y+        
Sbjct: 376 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCA 174
            AF       SSL+ L    N+       +I + L  L +L LSQ       P+A ++ +
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 175 YLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAE-LELMSLSENE 233
            LQ L +S N+F  +       L  L+ L    N +     +E  +    L  ++L++N+
Sbjct: 495 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 554

Query: 234 LQGAIPREW--GNLTGLGILQLSDNFLTGITPSS 265
                  +     +     L +    +   TPS 
Sbjct: 555 FACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 588

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  117 bits (294), Expect = 7e-30
 Identities = 47/218 (21%), Positives = 77/218 (35%), Gaps = 9/218 (4%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
            VL++SR  +         +LS L +L L+ N +      A     +L+ +   +  L+ 
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
                  +  +L+ L+   N +         SNL  LE+L LS N       + L     
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 176 LQ----RLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMSLS 230
           +      L LS N  + + P       +L  L L  N     + +     LA LE+  L 
Sbjct: 175 MPLLNLSLDLSLNPMNFIQP-GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

Query: 231 ENELQGAIPREW---GNLTGLGILQLSDNFLTGITPSS 265
             E +     E      L GL  L + +  L  +    
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  113 bits (286), Expect = 8e-29
 Identities = 44/216 (20%), Positives = 74/216 (34%), Gaps = 7/216 (3%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
             L +               L SL+ L  + N+   +       +     +S       G
Sbjct: 307 QHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIP-SALSNCA 174
                 F T+SL+YLD  FN +   + +N    L  LE+L    +        S   +  
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVIT-MSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 175 YLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMSLSENE 233
            L  L +S              L+ L+ L + GN  Q     +    L  L  + LS+ +
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 234 LQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
           L+   P  + +L+ L +L +S N    +       L
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 517

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  112 bits (281), Expect = 4e-28
 Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 10/225 (4%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
                  LN    IP  L    S ++L+LS N L      + F+   L+ +   + ++  
Sbjct: 10  ITYQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
                  + S L  L    N +         S L  L+ L   +          + +   
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 176 LQRLGLSSNDFSGV-VPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELM----SLS 230
           L+ L ++ N      +P+   NLT L+ L L  N++Q     +   L ++ L+     LS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 231 ENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKF 275
            N +   I         L  L L +NF +     +  + L  ++ 
Sbjct: 186 LNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 93.9 bits (234), Expect = 7e-22
 Identities = 36/245 (14%), Positives = 64/245 (26%), Gaps = 30/245 (12%)

Query: 54  RVTVLNISRLNLTGTIPSQ-LGNLSSLQSLNLSCNRLSGSIPSAIF--------TTYTLK 104
           R+  L +     +  +    +  L+ L+   L             F           T++
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 105 YVSFRKNQLSGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMF- 162
                            F   +++        T+      +       LE +      F 
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 163 ---------------HGGIPSALSNCAYLQRLGLSSND--FSGVVPKEICNLTKLKGLYL 205
                           GG   +  +   L+ L LS N   F G   +     T LK L L
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 206 GGNRLQGEIPRESGNLAELELMSLSENELQGAIPRE-WGNLTGLGILQLSDNFLTGITPS 264
             N +   +      L +LE +    + L+       + +L  L  L +S          
Sbjct: 381 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 265 SIYKL 269
               L
Sbjct: 440 IFNGL 444

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.1 bits (180), Expect = 7e-15
 Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 4/122 (3%)

Query: 148 NLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGG 207
            +P + Y  +  N +   IP  L      + L LS N    +      +  +L+ L L  
Sbjct: 6   VVPNITYQCMELNFYK--IPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR 61

Query: 208 NRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIY 267
             +Q        +L+ L  + L+ N +Q      +  L+ L  L   +  L  +    I 
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 268 KL 269
            L
Sbjct: 122 HL 123

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  137 bits (346), Expect = 8e-37
 Identities = 49/223 (21%), Positives = 88/223 (39%), Gaps = 6/223 (2%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS 114
           +TVLN++   L     +     S L SL++  N +S   P        LK ++ + N+LS
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCA 174
                     ++L  L    N++   I  N       L  L LS N              
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145

Query: 175 YLQRLGLSSNDFSGVVPKEI--CNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSEN 232
            LQ L LS+N    +  +E+     + LK L L  N+++   P     +  L  + L+  
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205

Query: 233 ELQGAIPREWG---NLTGLGILQLSDNFLTGITPSSIYKLLFS 272
           +L  ++  +       T +  L LS++ L+  + ++   L ++
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT 248

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  133 bits (338), Expect = 1e-35
 Identities = 42/229 (18%), Positives = 71/229 (31%), Gaps = 10/229 (4%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKNQLS 114
            +LN+++  ++         L  L+ L+L  N +   +    +     +  +    N+  
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSG-EIPANICSNLPFLEYLALSQNMFHGGIPSALSNC 173
               +      SLQ L      L   +   +    L  L  L LS N         L   
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503

Query: 174 AYLQRLGLSSN--------DFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELE 225
             L+ L L  N           G     +  L+ L  L L  N           +L EL+
Sbjct: 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563

Query: 226 LMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK 274
           ++ L  N L       + N   L  L L  N +T +          ++ 
Sbjct: 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT 612

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  132 bits (333), Expect = 5e-35
 Identities = 46/234 (19%), Positives = 78/234 (33%), Gaps = 15/234 (6%)

Query: 51  HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAI--FTTYTLKYVSF 108
               +  L++S   L+ T       L +LQ L LS N++       +  F   +LK +  
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 109 RKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICS--NLPFLEYLALSQNMFHGGI 166
             NQ+    P        L  L      L   +   +C       +  L+LS +      
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 167 PSALSNCAY--LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAEL 224
            +      +  L  L LS N+ + V       L +L+  +L  N +Q         L  +
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298

Query: 225 ELMSLSEN---------ELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
             ++L  +          L       +  L  L  L + DN + GI  +    L
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  128 bits (323), Expect = 1e-33
 Identities = 54/232 (23%), Positives = 84/232 (36%), Gaps = 16/232 (6%)

Query: 53  HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLS-GSIPSAIF---TTYTLKYVSF 108
             +  LN+   ++ G   +    L +L+ L+LS +  S  ++ +  F       L  ++ 
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388

Query: 109 RKNQLSGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIP 167
            KN++S    S AF     L+ LD G N +  E+       L  +  + LS N +     
Sbjct: 389 TKNKISK-IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447

Query: 168 SALSNCAYLQRLGLSSNDFSGV--VPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELE 225
           ++ +    LQRL L       V   P     L  L  L L  N +          L +LE
Sbjct: 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 507

Query: 226 LMSLSENELQ--------GAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
           ++ L  N L         G        L+ L IL L  N    I       L
Sbjct: 508 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  128 bits (323), Expect = 1e-33
 Identities = 49/221 (22%), Positives = 75/221 (33%), Gaps = 8/221 (3%)

Query: 52  SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKN 111
               T  +IS  +L          L  L+ LN+  N + G   +       LKY+S   +
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363

Query: 112 QLS-GAFPSFAF---NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIP 167
             S     +  F     S L  L+   N +S  I ++  S L  LE L L  N     + 
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISK-IESDAFSWLGHLEVLDLGLNEIGQELT 422

Query: 168 -SALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQG--EIPRESGNLAEL 224
                    +  + LS N +  +       +  L+ L L    L+     P     L  L
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482

Query: 225 ELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSS 265
            ++ LS N +          L  L IL L  N L  +   +
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  127 bits (321), Expect = 2e-33
 Identities = 47/231 (20%), Positives = 85/231 (36%), Gaps = 15/231 (6%)

Query: 54  RVTVLNISRLNLTGTIPSQLGNL--SSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKN 111
            +  L++S   L+ T  +    L  ++L  L+LS N L+     +      L+Y     N
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282

Query: 112 QLSGAFPSFAFNTSSLQYLDFGFNTLSG--------EIPANICSNLPFLEYLALSQNMFH 163
            +   F        +++YL+   +            +I       L  LE+L +  N   
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342

Query: 164 GGIPSALSNCAYLQRLGLSSNDFSGVVPKEI----CNLTKLKGLYLGGNRLQGEIPRESG 219
           G   +  +    L+ L LS++  S              + L  L L  N++         
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402

Query: 220 NLAELELMSLSENELQGAIP-REWGNLTGLGILQLSDNFLTGITPSSIYKL 269
            L  LE++ L  NE+   +  +EW  L  +  + LS N    +T +S   +
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  124 bits (313), Expect = 3e-32
 Identities = 48/217 (22%), Positives = 77/217 (35%), Gaps = 6/217 (2%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
            V + S L LT  +P  L   +++  LNL+ N+L     +       L  +    N +S 
Sbjct: 7   EVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
             P        L+ L+   N LS  +     +    L  L L  N       +       
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRE--SGNLAELELMSLSENE 233
           L  L LS N  S         L  L+ L L  N++Q     E      + L+ + LS N+
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

Query: 234 LQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL 270
           ++   P  +  +  L  L L++  L       +   L
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  107 bits (268), Expect = 2e-26
 Identities = 37/192 (19%), Positives = 58/192 (30%), Gaps = 28/192 (14%)

Query: 78  SLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTL 137
           S +  + S  +L+  +P  + T                          ++  L+   N L
Sbjct: 5   SHEVADCSHLKLT-QVPDDLPT--------------------------NITVLNLTHNQL 37

Query: 138 SGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNL 197
                AN  +    L  L +  N      P        L+ L L  N+ S +  K     
Sbjct: 38  RRLPAANF-TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96

Query: 198 TKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNF 257
           T L  L+L  N +Q            L  + LS N L          L  L  L LS+N 
Sbjct: 97  TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156

Query: 258 LTGITPSSIYKL 269
           +  +    +   
Sbjct: 157 IQALKSEELDIF 168

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 94.7 bits (236), Expect = 4e-22
 Identities = 37/171 (21%), Positives = 59/171 (34%), Gaps = 12/171 (7%)

Query: 56  TVLNISRLNLTG--TIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQL 113
             L + R+ L    + PS    L +L  L+LS N ++      +     L+ +  + N L
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516

Query: 114 S--------GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGG 165
           +        G    F    S L  L+   N     IP  +  +L  L+ + L  N  +  
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKIIDLGLNNLNTL 575

Query: 166 IPSALSNCAYLQRLGLSSNDFSGVVPKEIC-NLTKLKGLYLGGNRLQGEIP 215
             S  +N   L+ L L  N  + V  K        L  L +  N       
Sbjct: 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.7 bits (179), Expect = 1e-14
 Identities = 24/110 (21%), Positives = 34/110 (30%)

Query: 59  NISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFP 118
            + +    G     L  LS L  LNL  N             + LK +    N L+    
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 119 SFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPS 168
           S   N  SL+ L+   N ++             L  L +  N F     S
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 5/108 (4%)

Query: 54  RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQL 113
            + +LN+              +L  L+ ++L  N L+    S      +LK ++ +KN +
Sbjct: 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596

Query: 114 SGAFPS-FAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQN 160
           +      F     +L  LD  FN           S   F+ ++  +  
Sbjct: 597 TSVEKKVFGPAFRNLTELDMRFNPFDCTCE----SIAWFVNWINETHT 640

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  137 bits (346), Expect = 1e-36
 Identities = 51/311 (16%), Positives = 99/311 (31%), Gaps = 49/311 (15%)

Query: 1   ATANTSTITTDRDALLALKAHITHDPTNF---------FAKNWNTSTPVCNW---TGVTC 48
               T+    D  AL A+   +      +          + NWN +  +  W    GV  
Sbjct: 260 QLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDL 319

Query: 49  DVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSF 108
           D ++ RVT L+++     G +P  +G L+ L+ L+   +  + S         T      
Sbjct: 320 D-NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 109 RKNQLSGAFPSFAF------NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMF 162
           RK+++   +           N S L       N     I  +   +L   +   L+  + 
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI- 437

Query: 163 HGGIPSALSNCAYLQRLGLSSNDFSGV-------------------VPKEICNLTKLKGL 203
              I  A+     LQ +  +++ F+                           NL  L  +
Sbjct: 438 -TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496

Query: 204 YLGGNRLQGEIPRESGNLAELELMSLSENELQG---------AIPREWGNLTGLGILQLS 254
            L       ++P    +L EL+ ++++ N              +  +      + I  + 
Sbjct: 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556

Query: 255 DNFLTGITPSS 265
            N L     S+
Sbjct: 557 YNNLEEFPASA 567

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  128 bits (324), Expect = 9e-34
 Identities = 43/234 (18%), Positives = 81/234 (34%), Gaps = 19/234 (8%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSG---------SIPSAIFTTYTLKYV 106
           T + +        +P  L +L  LQSLN++CNR             +     T   ++  
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553

Query: 107 SFRKNQLSGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGG 165
               N L     S +      L  LD   N +   + A        L  L L  N     
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA--FGTNVKLTDLKLDYNQIEEI 610

Query: 166 IPSALSNCAYLQRLGLSSNDFSGVVPK-EICNLTKLKGLYLGGNRLQGEIPRESGNLAEL 224
                +    ++ LG S N    +       ++  +  +    N++  E    S ++ + 
Sbjct: 611 PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670

Query: 225 ELMS-----LSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSI 273
           + ++     LS NE+Q      +   + +  + LS+N +T I  +S+     + 
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  118 bits (297), Expect = 3e-30
 Identities = 33/231 (14%), Positives = 63/231 (27%), Gaps = 21/231 (9%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
              N               NL  L  + L        +P  ++    L+ ++   N+   
Sbjct: 470 EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529

Query: 116 ---------AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGI 166
                               +Q    G+N L     +     +  L  L    N      
Sbjct: 530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--H 587

Query: 167 PSALSNCAYLQRLGLSSNDFSGVVPKEIC-NLTKLKGLYLGGNRLQGEIPR--ESGNLAE 223
             A      L  L L  N     +P++ C    +++GL    N+L+  IP    + ++  
Sbjct: 588 LEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYV 645

Query: 224 LELMSLSENELQGAIPR-----EWGNLTGLGILQLSDNFLTGITPSSIYKL 269
           +  +  S N++           +         + LS N +           
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG 696

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  105 bits (264), Expect = 7e-26
 Identities = 37/223 (16%), Positives = 73/223 (32%), Gaps = 29/223 (13%)

Query: 54  RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQL 113
             + + +S   +           S + ++ LS N ++ SIP                   
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSL--------------- 717

Query: 114 SGAFPSFAFNTSSLQYLDFGFNTLSGEIPANI-CSNLPFLEYLALSQNMFHGGIPSALSN 172
                    NT  L  +D  FN L+  +  +   + LP+L  + +S N F    P+   N
Sbjct: 718 -KPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLN 774

Query: 173 CAYLQRLGL------SSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELEL 226
            + L+  G+        N      P  I     L  L +G N ++ ++  +     +L +
Sbjct: 775 SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYI 831

Query: 227 MSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
           + +++N                G+  L  +    I       +
Sbjct: 832 LDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGI 874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 12/92 (13%), Positives = 30/92 (32%)

Query: 184 NDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWG 243
           + +      ++ N  ++ GL L G   +G +P   G L EL+++S   +    +      
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 244 NLTGLGILQLSDNFLTGITPSSIYKLLFSIKF 275
                 + +   + +              +  
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  130 bits (330), Expect = 1e-34
 Identities = 54/219 (24%), Positives = 85/219 (38%), Gaps = 4/219 (1%)

Query: 54  RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQL 113
            V  +N+ +        +     S LQ L+L+   LS  +PS +    TLK +    N+ 
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKF 313

Query: 114 SGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFH--GGIPSALS 171
                  A N  SL +L    NT   E+      NL  L  L LS +           L 
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

Query: 172 NCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMSLS 230
           N ++LQ L LS N+   +  +      +L+ L L   RL+ +  +    NL  L++++LS
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433

Query: 231 ENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
            + L  +  + +  L  L  L L  N            L
Sbjct: 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  115 bits (291), Expect = 2e-29
 Identities = 51/207 (24%), Positives = 79/207 (38%), Gaps = 8/207 (3%)

Query: 56  TVLNIS--RLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQL 113
             L++S   +  +     QL NLS LQSLNLS N        A      L+ +     +L
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412

Query: 114 SGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGI---PSA 169
                   F N   L+ L+   + L       +   LP L++L L  N F  G     ++
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471

Query: 170 LSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSL 229
           L     L+ L LS  D S +      +L  +  + L  NRL         +L  + L +L
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL-NL 530

Query: 230 SENELQGAIPREWGNLTGLGILQLSDN 256
           + N +   +P     L+    + L  N
Sbjct: 531 ASNHISIILPSLLPILSQQRTINLRQN 557

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  106 bits (266), Expect = 4e-26
 Identities = 50/231 (21%), Positives = 83/231 (35%), Gaps = 9/231 (3%)

Query: 51  HSHRVTVLNISRLNLTGTIPSQLGN--LSSLQSLNLSCNRLSGSIPSAI--FTTYTLKYV 106
            S     LN         I   L N  + SL              P+        +++ +
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259

Query: 107 SFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGI 166
           + +K+       +     S LQ LD     LS E+P+ +   L  L+ L LS N F    
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLC 317

Query: 167 PSALSNCAYLQRLGLSSNDFSGVVPKE-ICNLTKLKGLYLGGNRLQ--GEIPRESGNLAE 223
             + SN   L  L +  N     +    + NL  L+ L L  + ++       +  NL+ 
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH 377

Query: 224 LELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK 274
           L+ ++LS NE        +     L +L L+   L      S ++ L  +K
Sbjct: 378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  103 bits (258), Expect = 5e-25
 Identities = 44/224 (19%), Positives = 75/224 (33%), Gaps = 30/224 (13%)

Query: 50  VHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFR 109
           +        N   L L   IP  L   +S + L  S N L  +I +  F+          
Sbjct: 9   IEKEVNKTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLP-TIQNTTFSRLI------- 57

Query: 110 KNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSA 169
                           +L +LD     +   I  +   +   L+ L L+ N       +A
Sbjct: 58  ----------------NLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMAETA 100

Query: 170 LSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSL 229
           LS    L+ L       S +    + N   L+ LYLG N +      +     +L+++  
Sbjct: 101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDF 160

Query: 230 SENELQGAIPREWGNLTGLGI--LQLSDNFLTGITPSSIYKLLF 271
             N +      +  +L       L L+ N + GI P +    +F
Sbjct: 161 QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  102 bits (255), Expect = 1e-24
 Identities = 43/243 (17%), Positives = 75/243 (30%), Gaps = 30/243 (12%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
             L   +  ++      L N  +L+SL L  N +S       F T  LK + F+ N +  
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167

Query: 116 -------------------------AFPSFAFNTSSLQYLDFGFNTLSGEIPANIC-SNL 149
                                         AF+++  Q L+FG       I   +  S +
Sbjct: 168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI 227

Query: 150 PFLEYLALSQNMFHGGIPSALSNCA--YLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGG 207
             L              P+         ++ + L  + F  +        + L+ L L  
Sbjct: 228 QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA 287

Query: 208 NRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDN-FLTGITPSSI 266
             L  E+P     L+ L+ + LS N+ +        N   L  L +  N     +    +
Sbjct: 288 THLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346

Query: 267 YKL 269
             L
Sbjct: 347 ENL 349

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 96.6 bits (241), Expect = 9e-23
 Identities = 36/184 (19%), Positives = 64/184 (34%), Gaps = 4/184 (2%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKNQLS 114
             LN+S                 L+ L+L+  RL      + F     LK ++   + L 
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSG--EIPANICSNLPFLEYLALSQNMFHGGIPSALSN 172
            +         +LQ+L+   N          N    L  LE L LS          A ++
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498

Query: 173 CAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSEN 232
              +  + LS N  +    + + +L  +  L L  N +   +P     L++   ++L +N
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQN 557

Query: 233 ELQG 236
            L  
Sbjct: 558 PLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.0 bits (190), Expect = 4e-16
 Identities = 37/160 (23%), Positives = 60/160 (37%), Gaps = 23/160 (14%)

Query: 53  HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQ 112
           H + VLN+S   L  +       L +LQ LNL  N                        Q
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI-----------------Q 467

Query: 113 LSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSN 172
            + +          L+ L   F  LS  I  +  ++L  + ++ LS N        ALS+
Sbjct: 468 KTNSLQ----TLGRLEILVLSFCDLS-SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

Query: 173 CAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQG 212
              +  L L+SN  S ++P  +  L++ + + L  N L  
Sbjct: 523 LKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 6/134 (4%)

Query: 54  RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQL 113
           R+ +L +S  +L+        +L  +  ++LS NRL+ S      +     Y++   N +
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT-SSSIEALSHLKGIYLNLASNHI 535

Query: 114 SGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNC 173
           S   PS     S  + ++   N L        CSN+ FLE+   +         +   N 
Sbjct: 536 SIILPSLLPILSQQRTINLRQNPLDC-----TCSNIYFLEWYKENMQKLEDTEDTLCENP 590

Query: 174 AYLQRLGLSSNDFS 187
             L+ + LS    S
Sbjct: 591 PLLRGVRLSDVTLS 604

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  117 bits (294), Expect = 7e-30
 Identities = 48/213 (22%), Positives = 75/213 (35%), Gaps = 6/213 (2%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSA--IFTTYTLKYVSFRKNQL 113
             L ++    +  I  +   L SL  L+LS N LS S   +     T +L+++    N  
Sbjct: 331 KSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388

Query: 114 SGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNC 173
                +       LQ+LDF  +TL      +   +L  L YL +S               
Sbjct: 389 II-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447

Query: 174 AYLQRLGLSSNDFSGVVPKEI-CNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSEN 232
             L  L ++ N F       +  N T L  L L   +L+         L  L+L+++S N
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507

Query: 233 ELQGAIPREWGNLTGLGILQLSDNFLTGITPSS 265
            L       +  L  L  L  S N +       
Sbjct: 508 NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  108 bits (273), Expect = 5e-27
 Identities = 44/211 (20%), Positives = 77/211 (36%), Gaps = 6/211 (2%)

Query: 53  HRVTVLNISRLNLTGTIPSQLGNL--SSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRK 110
             ++ L++SR  L+ +      +L  +SL+ L+LS N     + +       L+++ F+ 
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQH 408

Query: 111 NQLSGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPS- 168
           + L       AF +   L YLD  +          I   L  L  L ++ N F     S 
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKI-DFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467

Query: 169 ALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMS 228
             +N   L  L LS      +       L +L+ L +  N L          L  L  + 
Sbjct: 468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527

Query: 229 LSENELQGAIPREWGNLTGLGILQLSDNFLT 259
            S N ++ +          L    L++N + 
Sbjct: 528 CSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  104 bits (262), Expect = 1e-25
 Identities = 44/219 (20%), Positives = 78/219 (35%), Gaps = 10/219 (4%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS 114
              +++S   L         N S LQ L+LS   +      A    + L  +    N + 
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 115 GAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHG-GIPSALSN 172
             F   +F   +SL+ L      L+  + +     L  L+ L ++ N  H   +P+  SN
Sbjct: 94  S-FSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 173 CAYLQRLGLSSNDFSGVVPKEICNLTKLKG----LYLGGNRLQGEIPRESGNLAELELMS 228
              L  + LS N    +   ++  L +       L +  N +   I  ++    +L  ++
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELT 210

Query: 229 LSENELQGAIPRE-WGNLTGLGILQLSDNFLTGITPSSI 266
           L  N     I +    NL GL + +L            I
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 99.0 bits (247), Expect = 2e-23
 Identities = 43/215 (20%), Positives = 71/215 (33%), Gaps = 33/215 (15%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
                    L+  +P  +   SS ++++LS N L   + S  F+ ++             
Sbjct: 14  ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLK-ILKSYSFSNFS------------- 56

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
                      LQ+LD     +   I       L  L  L L+ N      P + S    
Sbjct: 57  ----------ELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105

Query: 176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQG-EIPRESGNLAELELMSLSENEL 234
           L+ L       + +    I  L  LK L +  N +   ++P    NL  L  + LS N +
Sbjct: 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165

Query: 235 QGAIPREWGNLTGLGI----LQLSDNFLTGITPSS 265
           Q     +   L         L +S N +  I   +
Sbjct: 166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 91.2 bits (227), Expect = 6e-21
 Identities = 42/237 (17%), Positives = 76/237 (32%), Gaps = 16/237 (6%)

Query: 53  HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQ 112
           H ++ L ++   +    P     L+SL++L     +L+      I    TLK ++   N 
Sbjct: 80  HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139

Query: 113 LSGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNL----PFLEYLALSQNMFHGGIP 167
           +        F N ++L ++D  +N +   I  N    L         L +S N       
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198

Query: 168 SALSNCAYLQRLGLSSNDFSGVVPKEIC-NLTKLKGLYLGGNRLQGEIPRESGNLAELE- 225
            A      L  L L  N  S  + K    NL  L    L     + E   E    + +E 
Sbjct: 199 QAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 257

Query: 226 -------LMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKF 275
                     L+          ++  L  +  + L+   +  +     +    S+  
Sbjct: 258 LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSI 314

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 79.3 bits (196), Expect = 7e-17
 Identities = 37/244 (15%), Positives = 62/244 (25%), Gaps = 33/244 (13%)

Query: 56  TVLNISRLNLTGTIPS-QLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLK--------YV 106
             L +     +  I    L NL+ L    L            IF    ++          
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 107 SFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSG------------------EIPANICSN 148
                             +++  +     ++                    ++      +
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLD 326

Query: 149 LPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPK--EICNLTKLKGLYLG 206
           LPFL+ L L+ N   G I         L  L LS N  S              L+ L L 
Sbjct: 327 LPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384

Query: 207 GNRLQGEIPRESGNLAELELMSLSENELQGAIPRE-WGNLTGLGILQLSDNFLTGITPSS 265
            N     +      L EL+ +    + L+       + +L  L  L +S           
Sbjct: 385 FNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443

Query: 266 IYKL 269
              L
Sbjct: 444 FLGL 447

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 5/109 (4%)

Query: 54  RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQL 113
            +T L++S+  L          L  LQ LN+S N L     S     Y+L  +    N++
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533

Query: 114 SGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMF 162
             +         SL + +   N+++      IC +  FL+++   +   
Sbjct: 534 ETSKGILQHFPKSLAFFNLTNNSVA-----CICEHQKFLQWVKEQKQFL 577

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 2/104 (1%)

Query: 166 IPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELE 225
           +P  + +    + + LS N    +      N ++L+ L L    ++    +    L  L 
Sbjct: 26  VPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83

Query: 226 LMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
            + L+ N +Q   P  +  LT L  L   +  L  +    I +L
Sbjct: 84  NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQL 127

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  109 bits (275), Expect = 2e-28
 Identities = 51/222 (22%), Positives = 86/222 (38%), Gaps = 13/222 (5%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
             L +  + L    P Q   LS LQ + +    L   +P  +     L+ ++  +N L  
Sbjct: 84  VALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR- 140

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICS--------NLPFLEYLALSQNMFHGGIP 167
           A P+   + + L+ L         E+P  + S         L  L+ L L        +P
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLP 199

Query: 168 SALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELM 227
           ++++N   L+ L + ++  S  +   I +L KL+ L L G       P   G  A L+ +
Sbjct: 200 ASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258

Query: 228 SLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
            L +      +P +   LT L  L L         PS I +L
Sbjct: 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  107 bits (270), Expect = 1e-27
 Identities = 43/214 (20%), Positives = 79/214 (36%), Gaps = 16/214 (7%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRK-NQL- 113
             + I    L   +P  +   + L++L L+ N L  ++P++I +   L+ +S R   +L 
Sbjct: 107 QHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT 164

Query: 114 -------SGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGI 166
                  S           +LQ L   +  +   +PA+I  NL  L+ L +  +     +
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLSA-L 221

Query: 167 PSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYL-GGNRLQGEIPRESGNLAELE 225
             A+ +   L+ L L         P        LK L L   + L   +P +   L +LE
Sbjct: 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLE 280

Query: 226 LMSLSENELQGAIPREWGNLTGLGILQLSDNFLT 259
            + L        +P     L    I+ +  +   
Sbjct: 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 95.4 bits (238), Expect = 5e-23
 Identities = 42/250 (16%), Positives = 77/250 (30%), Gaps = 38/250 (15%)

Query: 51  HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPS--------------- 95
           HS     L              L       + + +    +    +               
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK 69

Query: 96  ------AIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNL 149
                    T      +  R   L   FP  AF  S LQ++      L  E+P  +    
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QF 126

Query: 150 PFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICN---------LTKL 200
             LE L L++N     +P+++++   L+ L + +      +P+ + +         L  L
Sbjct: 127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185

Query: 201 KGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSD-NFLT 259
           + L L    ++  +P    NL  L+ + +  + L  A+     +L  L  L L     L 
Sbjct: 186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR 243

Query: 260 GITPSSIYKL 269
              P      
Sbjct: 244 NY-PPIFGGR 252

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 80.8 bits (200), Expect = 9e-18
 Identities = 33/208 (15%), Positives = 61/208 (29%), Gaps = 21/208 (10%)

Query: 73  LGNLSSLQSLNLS-CNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD 131
             + S  ++L       L       +            +   +        N+++ Q   
Sbjct: 8   HHHSSGRENLYFQGSTALR-PYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIET 62

Query: 132 FGFNTLSGEIPANI-CSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVV 190
                L       +  +  P    L L         P      ++LQ + + +      +
Sbjct: 63  RTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 191 PKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSE-NEL--------QGAIPRE 241
           P  +     L+ L L  N L+  +P    +L  L  +S+    EL              E
Sbjct: 120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 242 WGNLTGLGILQLSDNFLTGITPSSIYKL 269
              L  L  L+L    +  + P+SI  L
Sbjct: 179 HQGLVNLQSLRLEWTGIRSL-PASIANL 205

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (255), Expect = 2e-25
 Identities = 39/215 (18%), Positives = 83/215 (38%), Gaps = 14/215 (6%)

Query: 51  HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRK 110
           + +R  +  ++  +L   + S   +  +++ L+LS N LS    + +     L+ ++   
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 111 NQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSAL 170
           N L         + S+L+ LD   N +  E+        P +E L  + N       S  
Sbjct: 68  NVLYE-TLDLE-SLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNISRVSCSRG 119

Query: 171 SNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQG-EIPRESGNLAELELMSL 229
                 + + L++N  + +   +    ++++ L L  N +        + +   LE ++L
Sbjct: 120 QG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 230 SENELQGAIPREWGNLTGLGILQLSDNFLTGITPS 264
             N +   +  +      L  L LS N L  + P 
Sbjct: 177 QYNFIY-DVKGQV-VFAKLKTLDLSSNKLAFMGPE 209

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 86.6 bits (215), Expect = 6e-20
 Identities = 30/202 (14%), Positives = 69/202 (34%), Gaps = 35/202 (17%)

Query: 69  IPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQ 128
           I     N +  +   ++ + L     +++                         +  +++
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQ-----------------------SAWNVK 37

Query: 129 YLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSG 188
            LD   N LS +I A   +    LE L LS N+ +      L + + L+ L L++N    
Sbjct: 38  ELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ- 93

Query: 189 VVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGL 248
               E+     ++ L+   N +   +          + + L+ N++      + G  + +
Sbjct: 94  ----ELLVGPSIETLHAANNNIS-RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRV 146

Query: 249 GILQLSDNFLTGITPSSIYKLL 270
             L L  N +  +  + +    
Sbjct: 147 QYLDLKLNEIDTVNFAELAASS 168

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 85.8 bits (213), Expect = 1e-19
 Identities = 27/224 (12%), Positives = 83/224 (37%), Gaps = 13/224 (5%)

Query: 53  HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKN 111
             +  L+ +  N++  +          +++ L+ N+++  +        + ++Y+  + N
Sbjct: 99  PSIETLHAANNNIS-RVSC--SRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLN 154

Query: 112 QLSG-AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSAL 170
           ++    F   A ++ +L++L+  +N +  ++   +      L+ L LS N     +    
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSNKLAF-MGPEF 210

Query: 171 SNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLS 230
            + A +  + L +N    ++ K +     L+   L GN                 + +++
Sbjct: 211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVA 268

Query: 231 ENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK 274
           +  ++  +  +      +  L     +     P+     L ++ 
Sbjct: 269 KQTVKK-LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALG 311

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 2/99 (2%)

Query: 165 GIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAEL 224
            I     N    +   ++ +     +     +   +K L L GN L      +     +L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 225 ELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITP 263
           EL++LS N L      +  +L+ L  L L++N++  +  
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQELLV 97

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 18/135 (13%), Positives = 40/135 (29%), Gaps = 15/135 (11%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
             L++S   L   +  +  + + +  ++L  N+L   I  A+  +  L++   R N    
Sbjct: 194 KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH- 250

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFL--EYLALSQNMFHGGIPSALSNC 173
                     +L+        +   +       L     E   +     +G         
Sbjct: 251 --------CGTLRDFFSKNQRVQ-TVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301

Query: 174 AYLQRL-GLSSNDFS 187
            +  RL  L  +   
Sbjct: 302 PFADRLIALGHHHHH 316

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 99.3 bits (248), Expect = 1e-24
 Identities = 49/225 (21%), Positives = 85/225 (37%), Gaps = 6/225 (2%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLS-GSIPSAIFTTYT-LKYVSFRKNQ 112
            T L +    L          L+ L  L+LS N LS     S      T LKY+    N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 113 LSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSN 172
           +     +F      L++LDF  + L      ++  +L  L YL +S            + 
Sbjct: 90  VITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148

Query: 173 CAYLQRLGLSSNDFSGVVPKEI-CNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMSLS 230
            + L+ L ++ N F      +I   L  L  L L   +L+ ++   +  +L+ L+++++S
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMS 207

Query: 231 ENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKF 275
            N         +  L  L +L  S N +       +     S+ F
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 96.2 bits (240), Expect = 2e-23
 Identities = 44/211 (20%), Positives = 80/211 (37%), Gaps = 11/211 (5%)

Query: 53  HRVTVLNIS--RLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRK 110
            ++T L++S   L+  G         +SL+ L+LS N +  ++ S       L+++ F+ 
Sbjct: 52  TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 110

Query: 111 NQLSGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPS- 168
           + L        F +  +L YLD             I + L  LE L ++ N F       
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169

Query: 169 ALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELM 227
             +    L  L LS      + P    +L+ L+ L +  N     +       L  L+++
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVL 228

Query: 228 SLSENELQGAIPREW--GNLTGLGILQLSDN 256
             S N +     ++      + L  L L+ N
Sbjct: 229 DYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  101 bits (252), Expect = 2e-24
 Identities = 39/215 (18%), Positives = 83/215 (38%), Gaps = 14/215 (6%)

Query: 51  HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRK 110
           + +R  +  ++  +L   + S   +  +++ L+LS N LS    + +     L+ ++   
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 111 NQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSAL 170
           N L         + S+L+ LD   N +  E+        P +E L  + N       S  
Sbjct: 68  NVLYE-TLDLE-SLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNISRVSCSRG 119

Query: 171 SNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQG-EIPRESGNLAELELMSL 229
                 + + L++N  + +   +    ++++ L L  N +        + +   LE ++L
Sbjct: 120 QG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 230 SENELQGAIPREWGNLTGLGILQLSDNFLTGITPS 264
             N +   +  +      L  L LS N L  + P 
Sbjct: 177 QYNFIY-DVKGQV-VFAKLKTLDLSSNKLAFMGPE 209

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 89.1 bits (221), Expect = 2e-20
 Identities = 41/220 (18%), Positives = 78/220 (35%), Gaps = 16/220 (7%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
            +LN+S   L       L +LS+L++L+L+ N +       +    +++ +    N +S 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHG-GIPSALSNCA 174
                       + +    N ++  +          ++YL L  N           ++  
Sbjct: 113 RVSCSRG--QGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 175 YLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENEL 234
            L+ L L  N     V  ++    KLK L L  N+L   +  E  + A +  +SL  N+L
Sbjct: 170 TLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 235 QGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK 274
              I +       L    L  N     T    +     ++
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 86.8 bits (215), Expect = 1e-19
 Identities = 36/198 (18%), Positives = 70/198 (35%), Gaps = 12/198 (6%)

Query: 69  IPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQ 128
           I     N +  +   ++ + L  ++ S   + + +K +    N LS    +     + L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 129 YLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSG 188
            L+   N L  E       +L  L  L L+ N         L     ++ L  ++N+ S 
Sbjct: 62  LLNLSSNVLY-ETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113

Query: 189 VVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQG-AIPREWGNLTG 247
           V           K +YL  N++      + G  + ++ + L  NE+          +   
Sbjct: 114 VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 248 LGILQLSDNFLTGITPSS 265
           L  L L  NF+  +    
Sbjct: 171 LEHLNLQYNFIYDVKGQV 188

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 78.0 bits (192), Expect = 2e-16
 Identities = 28/172 (16%), Positives = 60/172 (34%), Gaps = 21/172 (12%)

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
           A      N +  +      ++L  +  A++  +   ++ L LS N       + L+    
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPR-----------------ES 218
           L+ L LSSN        ++ +L+ L+ L L  N +Q E+                     
Sbjct: 60  LELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANNNISRVSC 116

Query: 219 GNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL 270
                 + + L+ N++      + G  + +  L L  N +  +  + +    
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 67.6 bits (165), Expect = 6e-13
 Identities = 25/217 (11%), Positives = 58/217 (26%), Gaps = 13/217 (5%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS- 114
             L++S   L   +  +  + + +  ++L  N+L   I  A+  +  L++   R N    
Sbjct: 194 KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCA 174
           G    F      +Q +         ++                                 
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLI 308

Query: 175 YLQRLGLSSNDFSGVVPKEI----CNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLS 230
            L+R   +     G   + +     N  + + +     + +  I + +        +   
Sbjct: 309 ALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQK 368

Query: 231 ENELQGAIP---REWGNLTGLGILQLSDNFLTGITPS 264
           +  L   +    R    L G     +    L   T  
Sbjct: 369 KKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEE 405

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.9 bits (153), Expect = 2e-11
 Identities = 27/193 (13%), Positives = 56/193 (29%), Gaps = 10/193 (5%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
           T +++    L   I   L    +L+  +L  N          F+    +  +  K  +  
Sbjct: 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN-QRVQTVAKQTVKK 274

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS----QNMFHGGIPSALS 171
                    +      +G      ++PA     L  L+    +    Q      +     
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCE-DLPAPFADRLIALKRKEHALLSGQGSETERLECERE 333

Query: 172 NCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELE---LMS 228
           N A  + +      +  V+ +          L      L  ++       AEL+     +
Sbjct: 334 NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQA 393

Query: 229 LSENELQGAIPRE 241
           + + ELQ A   +
Sbjct: 394 VGQIELQHATEEQ 406

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 98.0 bits (245), Expect = 6e-24
 Identities = 50/209 (23%), Positives = 93/209 (44%), Gaps = 16/209 (7%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS 114
           +T L ++   +  +I   +  L++L+ LNL+ N+++   P +      L  +    N+++
Sbjct: 46  ITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQITDISPLSNLV--KLTNLYIGTNKIT 101

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCA 174
               +   N ++L+ L    + +S   P    +NL  +  L L  N       S LSN  
Sbjct: 102 D-ISALQ-NLTNLRELYLNEDNISDISPL---ANLTKMYSLNLGANHNL-SDLSPLSNMT 155

Query: 175 YLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENEL 234
            L  L ++ +    V P  I NLT L  L L  N+++   P    +L  L   +   N++
Sbjct: 156 GLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQI 211

Query: 235 QGAIPREWGNLTGLGILQLSDNFLTGITP 263
               P    N+T L  L++ +N +T ++P
Sbjct: 212 TDITP--VANMTRLNSLKIGNNKITDLSP 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 97.2 bits (243), Expect = 1e-23
 Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 15/204 (7%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
             L ++   +    P  + NL+ L SL+L+ N++    P  + +  +L Y +   NQ++ 
Sbjct: 158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
                A N + L  L  G N ++   P    +NL  L +L +  N       +A+ +   
Sbjct: 214 -ITPVA-NMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISD--INAVKDLTK 266

Query: 176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ 235
           L+ L + SN  S +    + NL++L  L+L  N+L  E     G L  L  + LS+N + 
Sbjct: 267 LKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324

Query: 236 GAIPREWGNLTGLGILQLSDNFLT 259
              P    +L+ +     ++  + 
Sbjct: 325 DIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 95.3 bits (238), Expect = 7e-23
 Identities = 57/208 (27%), Positives = 91/208 (43%), Gaps = 14/208 (6%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
             LN+   N   +  S L N++ L  L ++ +++    P A  T   L  +S   NQ+  
Sbjct: 135 YSLNLGA-NHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTD--LYSLSLNYNQIED 191

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
                A + +SL Y     N ++   P    +N+  L  L +  N       S L+N + 
Sbjct: 192 -ISPLA-SLTSLHYFTAYVNQITDITPV---ANMTRLNSLKIGNNKITD--LSPLANLSQ 244

Query: 176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ 235
           L  L + +N  S +    + +LTKLK L +G N++         NL++L  + L+ N+L 
Sbjct: 245 LTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLG 300

Query: 236 GAIPREWGNLTGLGILQLSDNFLTGITP 263
                  G LT L  L LS N +T I P
Sbjct: 301 NEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 93.8 bits (234), Expect = 2e-22
 Identities = 47/214 (21%), Positives = 90/214 (42%), Gaps = 16/214 (7%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
             L ++  N++   P  L NL+ + SLNL  N    S  S +     L Y++  ++++  
Sbjct: 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKD 169

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
                A N + L  L   +N +    P    ++L  L Y     N       + ++N   
Sbjct: 170 -VTPIA-NLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITD--ITPVANMTR 222

Query: 176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ 235
           L  L + +N  + +    + NL++L  L +G N++         +L +L+++++  N++ 
Sbjct: 223 LNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS 278

Query: 236 GAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
                   NL+ L  L L++N L       I  L
Sbjct: 279 DISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGL 310

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 92.6 bits (231), Expect = 6e-22
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 17/208 (8%)

Query: 59  NISRLNLTG---TIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
            ++ L +     T  S L NL++L+ L L+ + +S   P A  T   +  ++   N    
Sbjct: 89  KLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLT--KMYSLNLGANHNLS 146

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
                + N + L YL    + +    P    +NL  L  L+L+ N       S L++   
Sbjct: 147 DLSPLS-NMTGLNYLTVTESKVKDVTPI---ANLTDLYSLSLNYNQIED--ISPLASLTS 200

Query: 176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ 235
           L       N  + + P  + N+T+L  L +G N++    P    NL++L  + +  N++ 
Sbjct: 201 LHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS 256

Query: 236 GAIPREWGNLTGLGILQLSDNFLTGITP 263
                   +LT L +L +  N ++ I+ 
Sbjct: 257 D--INAVKDLTKLKMLNVGSNQISDISV 282

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 89.9 bits (224), Expect = 6e-21
 Identities = 45/208 (21%), Positives = 85/208 (40%), Gaps = 16/208 (7%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
             L      +    P    +L+      L    ++  +        ++  +     +++ 
Sbjct: 3   ATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQEELE--SITKLVVAGEKVAS 58

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
                 + T +L+YL+   N ++   P    SNL  L  L +  N       SAL N   
Sbjct: 59  -IQGIEYLT-NLEYLNLNGNQITDISPL---SNLVKLTNLYIGTNKIT--DISALQNLTN 111

Query: 176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ 235
           L+ L L+ ++ S +    + NLTK+  L LG N    ++     N+  L  ++++E++++
Sbjct: 112 LRELYLNEDNISDI--SPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK 168

Query: 236 GAIPREWGNLTGLGILQLSDNFLTGITP 263
              P    NLT L  L L+ N +  I+P
Sbjct: 169 DVTP--IANLTDLYSLSLNYNQIEDISP 194

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 99.4 bits (248), Expect = 7e-24
 Identities = 41/219 (18%), Positives = 83/219 (37%), Gaps = 7/219 (3%)

Query: 54  RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFT-TYTLKYVSFRKNQ 112
              +L++ +  +      +  +   L+ L L+ N +S ++    F   + L+ +  R N+
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNR 91

Query: 113 LSGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALS 171
           L    P   F   S+L  LD   N +   +   +  +L  L+ L +  N        A S
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149

Query: 172 NCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMSLS 230
               L++L L   + + +  + + +L  L  L L    +   I   S   L  L+++ +S
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEIS 208

Query: 231 ENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
                  +         L  L ++   LT +   ++  L
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 99.4 bits (248), Expect = 7e-24
 Identities = 46/222 (20%), Positives = 85/222 (38%), Gaps = 10/222 (4%)

Query: 52  SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRK 110
           S +   +   R      +P  +   +  + L+L  NR+  ++    F ++  L+ +   +
Sbjct: 10  SAQDRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNE 65

Query: 111 NQLSGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSA 169
           N +S A    AF N  +L+ L    N L   IP  + + L  L  L +S+N     +   
Sbjct: 66  NIVS-AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYM 123

Query: 170 LSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMS 228
             +   L+ L +  ND   +  +    L  L+ L L    L   IP E+  +L  L ++ 
Sbjct: 124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLR 182

Query: 229 LSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL 270
           L    +       +  L  L +L++S          +    L
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 95.6 bits (238), Expect = 2e-22
 Identities = 52/213 (24%), Positives = 85/213 (39%), Gaps = 7/213 (3%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKNQLS 114
             L ++   ++   P    NL +L++L L  NRL   IP  +FT  + L  +   +N++ 
Sbjct: 59  EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV 117

Query: 115 GAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNC 173
                + F +  +L+ L+ G N L   I     S L  LE L L +         ALS+ 
Sbjct: 118 -ILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175

Query: 174 AYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENE 233
             L  L L   + + +       L +LK L +        +         L  +S++   
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235

Query: 234 LQGAIPRE-WGNLTGLGILQLSDNFLTGITPSS 265
           L  A+P     +L  L  L LS N ++ I  S 
Sbjct: 236 LT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 94.0 bits (234), Expect = 5e-22
 Identities = 46/213 (21%), Positives = 83/213 (38%), Gaps = 7/213 (3%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTT-YTLKYVSFRKNQLS 114
           T L+IS   +   +     +L +L+SL +  N L   I    F+   +L+ ++  K  L+
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT 165

Query: 115 GAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNC 173
            + P+ A  +   L  L      ++  I       L  L+ L +S   +   +       
Sbjct: 166 -SIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223

Query: 174 AYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMSLSEN 232
             L  L ++  + + V    + +L  L+ L L  N +   I       L  L+ + L   
Sbjct: 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGG 282

Query: 233 ELQGAIPREWGNLTGLGILQLSDNFLTGITPSS 265
           +L    P  +  L  L +L +S N LT +  S 
Sbjct: 283 QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 88.6 bits (220), Expect = 4e-20
 Identities = 45/210 (21%), Positives = 85/210 (40%), Gaps = 9/210 (4%)

Query: 53  HRVTVLNISRLNLTGTIPSQ-LGNLSSLQSLNLSCNRLSGSIPSAIFT-TYTLKYVSFRK 110
           + +  L +   N    I  +    L+SL+ L L    L+ SIP+   +  + L  +  R 
Sbjct: 128 YNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRH 185

Query: 111 NQLSGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSA 169
             ++ A   ++F     L+ L+         +  N    L  L  L+++          A
Sbjct: 186 LNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLA 243

Query: 170 LSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMS 228
           + +  YL+ L LS N  S +    +  L +L+ + L G +L   +   +   L  L +++
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLN 302

Query: 229 LSENELQGAIPREWGNLTGLGILQLSDNFL 258
           +S N+L       + ++  L  L L  N L
Sbjct: 303 VSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 80.1 bits (198), Expect = 3e-17
 Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 3/157 (1%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
            VL +  LN+          L  L+ L +S      ++         L  +S     L+ 
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT- 237

Query: 116 AFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCA 174
           A P  A  +   L++L+  +N +S  I  ++   L  L+ + L         P A     
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296

Query: 175 YLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ 211
           YL+ L +S N  + +      ++  L+ L L  N L 
Sbjct: 297 YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.8 bits (140), Expect = 8e-10
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 5/115 (4%)

Query: 51  HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFR 109
           +   +T L+I+  NLT      + +L  L+ LNLS N +S +I  ++      L+ +   
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLV 280

Query: 110 KNQLSGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFH 163
             QL+     +AF   + L+ L+   N L+  +  ++  ++  LE L L  N   
Sbjct: 281 GGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 97.0 bits (242), Expect = 2e-23
 Identities = 49/217 (22%), Positives = 89/217 (41%), Gaps = 16/217 (7%)

Query: 53  HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQ 112
            ++T L++S  NL           +SLQ+L LS NRL+  +  ++  +  L + +   N 
Sbjct: 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPS--LFHANVSYNL 197

Query: 113 LSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSN 172
           LS           +++ LD   N+++  +   +   L     L L  N       + L N
Sbjct: 198 LS-TLA----IPIAVEELDASHNSIN-VVRGPVNVEL---TILKLQHNNLTD--TAWLLN 246

Query: 173 CAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSEN 232
              L  + LS N+   ++      + +L+ LY+  NRL   +      +  L+++ LS N
Sbjct: 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 305

Query: 233 ELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
            L   + R       L  L L  N +  +  S+ + L
Sbjct: 306 HLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTL 341

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 90.1 bits (224), Expect = 7e-21
 Identities = 48/219 (21%), Positives = 76/219 (34%), Gaps = 18/219 (8%)

Query: 53  HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKN 111
            +V +LN++ L +            ++Q L +  N +   +P  +F     L  +   +N
Sbjct: 69  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERN 127

Query: 112 QLSGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSAL 170
            LS + P   F NT  L  L    N L   I  +       L+ L LS N       S +
Sbjct: 128 DLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLI 185

Query: 171 SNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLS 230
            +   L    +S N  S      +     ++ L    N +   +        EL ++ L 
Sbjct: 186 PS---LFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQ 234

Query: 231 ENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
            N L         N  GL  + LS N L  I      K+
Sbjct: 235 HNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 89.7 bits (223), Expect = 1e-20
 Identities = 39/214 (18%), Positives = 81/214 (37%), Gaps = 13/214 (6%)

Query: 58  LNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKNQLSGA 116
           ++I           +   L++ + +    + +   +P+A+  ++  ++ ++    Q+   
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-E 83

Query: 117 FPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
             ++AF    ++Q L  GFN +   +P ++  N+P L  L L +N           N   
Sbjct: 84  IDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 142

Query: 176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ 235
           L  L +S+N+   +        T L+ L L  NRL   +      +  L   ++S N L 
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS 199

Query: 236 GAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
                       +  L  S N +  +      +L
Sbjct: 200 -----TLAIPIAVEELDASHNSINVVRGPVNVEL 228

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 88.2 bits (219), Expect = 3e-20
 Identities = 45/219 (20%), Positives = 75/219 (34%), Gaps = 19/219 (8%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
             L +S   LT  +   L  + SL   N+S N LS ++   I     ++ +    N ++ 
Sbjct: 168 QNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-TLAIPIA----VEELDASHNSIN- 218

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
                      L  L    N L+ +       N P L  + LS N     +         
Sbjct: 219 VVRGPVN--VELTILKLQHNNLT-DTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273

Query: 176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ 235
           L+RL +S+N     +      +  LK L L  N L   + R       LE + L  N + 
Sbjct: 274 LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

Query: 236 GAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK 274
             +         L  L LS N     +  ++++ +    
Sbjct: 332 -TLKL--STHHTLKNLTLSHNDWDCNSLRALFRNVARPA 367

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 83.2 bits (206), Expect = 2e-18
 Identities = 37/200 (18%), Positives = 66/200 (33%), Gaps = 8/200 (4%)

Query: 68  TIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAF-NTSS 126
            I S L        +++              T    K V+F+ + +    P+    +   
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 70

Query: 127 LQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDF 186
           ++ L+     +  EI     +    ++ L +  N      P    N   L  L L  ND 
Sbjct: 71  VELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129

Query: 187 SGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMSLSENELQGAIPREWGNL 245
           S +      N  KL  L +  N L+  I  ++      L+ + LS N L   +      +
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLI 185

Query: 246 TGLGILQLSDNFLTGITPSS 265
             L    +S N L+ +    
Sbjct: 186 PSLFHANVSYNLLSTLAIPI 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 96.1 bits (239), Expect = 1e-22
 Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 16/217 (7%)

Query: 53  HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQ 112
            ++T L++S  NL           +SLQ+L LS NRL+  +  ++  +  L + +   N 
Sbjct: 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPS--LFHANVSYNL 203

Query: 113 LSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSN 172
           LS           +++ LD   N+++  +   +   L  L+   L  N       + L N
Sbjct: 204 LS-TLA----IPIAVEELDASHNSIN-VVRGPVNVELTILK---LQHNNLTD--TAWLLN 252

Query: 173 CAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSEN 232
              L  + LS N+   ++      + +L+ LY+  NRL   +      +  L+++ LS N
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 311

Query: 233 ELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
            L   + R       L  L L  N +  +  S+ + L
Sbjct: 312 HLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTL 347

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 91.1 bits (226), Expect = 6e-21
 Identities = 39/214 (18%), Positives = 81/214 (37%), Gaps = 13/214 (6%)

Query: 58  LNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKNQLSGA 116
           ++I           +   L++ + +    + +   +P+A+  ++  ++ ++    Q+   
Sbjct: 32  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-E 89

Query: 117 FPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
             ++AF    ++Q L  GFN +   +P ++  N+P L  L L +N           N   
Sbjct: 90  IDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148

Query: 176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ 235
           L  L +S+N+   +        T L+ L L  NRL   +      +  L   ++S N L 
Sbjct: 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIPSLFHANVSYNLLS 205

Query: 236 GAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
                       +  L  S N +  +      +L
Sbjct: 206 -----TLAIPIAVEELDASHNSINVVRGPVNVEL 234

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 88.4 bits (219), Expect = 5e-20
 Identities = 48/218 (22%), Positives = 76/218 (34%), Gaps = 18/218 (8%)

Query: 54  RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKNQ 112
           +V +LN++ L +            ++Q L +  N +   +P  +F     L  +   +N 
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND 134

Query: 113 LSGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALS 171
           LS + P   F NT  L  L    N L   I  +       L+ L LS N       S + 
Sbjct: 135 LS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP 192

Query: 172 NCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSE 231
           +   L    +S N  S      +     ++ L    N +   +        EL ++ L  
Sbjct: 193 S---LFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVR--GPVNVELTILKLQH 241

Query: 232 NELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
           N L         N  GL  + LS N L  I      K+
Sbjct: 242 NNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 86.1 bits (213), Expect = 3e-19
 Identities = 45/220 (20%), Positives = 75/220 (34%), Gaps = 19/220 (8%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
             L +S   LT  +   L  + SL   N+S N LS ++   I     ++ +    N ++ 
Sbjct: 174 QNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-TLAIPIA----VEELDASHNSIN- 224

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
                      L  L    N L+ +       N P L  + LS N     +         
Sbjct: 225 VVRGPVN--VELTILKLQHNNLT-DTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279

Query: 176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ 235
           L+RL +S+N     +      +  LK L L  N L   + R       LE + L  N + 
Sbjct: 280 LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

Query: 236 GAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKF 275
             +         L  L LS N     +  ++++ +     
Sbjct: 338 -TLKL--STHHTLKNLTLSHNDWDCNSLRALFRNVARPAV 374

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 83.4 bits (206), Expect = 3e-18
 Identities = 38/208 (18%), Positives = 67/208 (32%), Gaps = 8/208 (3%)

Query: 60  ISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPS 119
             R      I S L        +++              T    K V+F+ + +    P+
Sbjct: 10  KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPA 68

Query: 120 FAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQR 178
               +   ++ L+     +  EI     +    ++ L +  N      P    N   L  
Sbjct: 69  ALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127

Query: 179 LGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMSLSENELQGA 237
           L L  ND S +      N  KL  L +  N L+  I  ++      L+ + LS N L   
Sbjct: 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-H 185

Query: 238 IPREWGNLTGLGILQLSDNFLTGITPSS 265
           +      +  L    +S N L+ +    
Sbjct: 186 VDL--SLIPSLFHANVSYNLLSTLAIPI 211

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.6 bits (152), Expect = 3e-11
 Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 7/158 (4%)

Query: 118 PSFAFNTSSLQYL----DFGFNTLSGEIPANICS-NLPFLEYLALSQNMFHGGIPSALSN 172
           P +    S+LQY     D   +  + ++        L   + +    +       + L +
Sbjct: 14  PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS 73

Query: 173 CAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMSLSE 231
              ++ L L+      +          ++ LY+G N ++  +P     N+  L ++ L  
Sbjct: 74  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLER 132

Query: 232 NELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
           N+L       + N   L  L +S+N L  I   +    
Sbjct: 133 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 95.6 bits (238), Expect = 1e-22
 Identities = 50/228 (21%), Positives = 83/228 (36%), Gaps = 11/228 (4%)

Query: 52  SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRK 110
                 LN+   N+         +L  L+ L L  N +   I    F     L  +    
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD 132

Query: 111 NQLSGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPS- 168
           N L+   PS AF   S L+ L    N +   IP+   + +P L  L L +      I   
Sbjct: 133 NWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEG 190

Query: 169 ALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELM 227
           A      L+ L L   +   +    +  L  L+ L + GN    EI   S   L+ L+ +
Sbjct: 191 AFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKL 247

Query: 228 SLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKF 275
            +  +++       +  L  L  L L+ N L+ + P  ++  L  +  
Sbjct: 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL-PHDLFTPLRYLVE 294

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.7 bits (189), Expect = 4e-16
 Identities = 48/185 (25%), Positives = 73/185 (39%), Gaps = 12/185 (6%)

Query: 56  TVLNISRLNLTGTIPSQ-LGNLSSLQSLNLSCNRLSGSIPSAIFT-TYTLKYVS-FRKNQ 112
             L +    LT  IPS     LS L+ L L  N +  SIPS  F    +L  +      +
Sbjct: 126 NTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKK 183

Query: 113 LSGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALS 171
           L       AF    +L+YL+ G   +  ++P    + L  LE L +S N F    P +  
Sbjct: 184 LE-YISEGAFEGLFNLKYLNLGMCNIK-DMPN--LTPLVGLEELEMSGNHFPEIRPGSFH 239

Query: 172 NCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMSLS 230
             + L++L + ++  S +       L  L  L L  N L   +P +    L  L  + L 
Sbjct: 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLH 298

Query: 231 ENELQ 235
            N   
Sbjct: 299 HNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 6/132 (4%)

Query: 140 EIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTK 199
           E+P  I        YL L +N           +  +L+ L L  N    +       L  
Sbjct: 68  EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS 124

Query: 200 LKGLYLGGNRLQGEIPRES-GNLAELELMSLSENELQGAIPREWGNLTGLGILQLSD-NF 257
           L  L L  N L   IP  +   L++L  + L  N ++      +  +  L  L L +   
Sbjct: 125 LNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK 183

Query: 258 LTGITPSSIYKL 269
           L  I+  +   L
Sbjct: 184 LEYISEGAFEGL 195

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 96.0 bits (239), Expect = 2e-22
 Identities = 47/238 (19%), Positives = 79/238 (33%), Gaps = 21/238 (8%)

Query: 52  SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRK 110
           S    +      NLT  +P     L++ + L LS N +  ++ ++ F     L+ +    
Sbjct: 3   SFDGRIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGS 57

Query: 111 NQLSGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGI--P 167
                     AF N  +L+ LD G + +   +  +    L  L  L L        +   
Sbjct: 58  QYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116

Query: 168 SALSNCAYLQRLGLSSNDFSGV-VPKEICNLTKLKGLYLGGNRLQGEIPRESGN---LAE 223
               N   L RL LS N    + +      L  LK +    N++   +            
Sbjct: 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKT 175

Query: 224 LELMSLSENELQGAIPREWGNLTG------LGILQLSDNFLTGITPSSIYKLLFSIKF 275
           L   SL+ N L   +  +WG          L IL +S N  T     +    +   + 
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 94.1 bits (234), Expect = 9e-22
 Identities = 59/239 (24%), Positives = 90/239 (37%), Gaps = 21/239 (8%)

Query: 53  HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQ 112
             + VLN++   +          L +LQ LNLS N L     S  +    + Y+  +KN 
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349

Query: 113 LSGAFPSFAFNTSSLQYLDFGFN--------------TLSGEIPANICSNLPFLEYLALS 158
           ++            LQ LD   N               LSG     +         + LS
Sbjct: 350 IAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLS 409

Query: 159 QNMFHG-GIPSALSNCAYLQRLGLSSNDFSGVVPKEIC-NLTKLKGLYLGGNRLQGEIPR 216
           +N      I   L    +LQ L L+ N FS     +       L+ L+LG N LQ     
Sbjct: 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET 469

Query: 217 ES-----GNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL 270
           E        L+ L+++ L+ N L    P  + +LT L  L L+ N LT ++ + +   L
Sbjct: 470 ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANL 528

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 91.0 bits (226), Expect = 8e-21
 Identities = 49/227 (21%), Positives = 92/227 (40%), Gaps = 15/227 (6%)

Query: 52  SHRVTVLNISRLNLTGTIPSQLGNL--SSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSF 108
           +H +        N+     +    L  SS++ L+LS   +  S+ S +F T   LK ++ 
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNL 297

Query: 109 RKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPS 168
             N+++       +   +LQ L+  +N L  E+ ++    LP + Y+ L +N        
Sbjct: 298 AYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356

Query: 169 ALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMS 228
                  LQ L L  N  +      I  +  +  ++L GN+L   +P+ +       L+ 
Sbjct: 357 TFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-TLPKINLTA---NLIH 407

Query: 229 LSENELQGAIPREW-GNLTGLGILQLSDNFLTGITPSSIYKLLFSIK 274
           LSEN L+      +   +  L IL L+ N  +  +         S++
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLE 454

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 90.6 bits (225), Expect = 1e-20
 Identities = 48/238 (20%), Positives = 82/238 (34%), Gaps = 25/238 (10%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS 114
           V  L++S   +          L  L+ LNL+ N+++     A +    L+ ++   N L 
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQN-------------- 160
             + S  +    + Y+D   N ++  I       L  L+ L L  N              
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDI 386

Query: 161 -MFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEI-CNLTKLKGLYLGGNRLQGEIPRES 218
            +    + +          + LS N    +        +  L+ L L  NR       + 
Sbjct: 387 FLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS-SCSGDQ 445

Query: 219 --GNLAELELMSLSENELQGAIPRE-----WGNLTGLGILQLSDNFLTGITPSSIYKL 269
                  LE + L EN LQ A   E     +  L+ L +L L+ N+L  + P     L
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL 503

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 84.5 bits (209), Expect = 1e-18
 Identities = 48/194 (24%), Positives = 78/194 (40%), Gaps = 12/194 (6%)

Query: 59  NISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFP 118
            +  L+L     + +  + S+  + LS N+L  ++P    T      +   +N+L     
Sbjct: 363 KLQTLDLRDNALTTIHFIPSIPDIFLSGNKLV-TLPKINLT---ANLIHLSENRLENLDI 418

Query: 119 -SFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGI-----PSALSN 172
             F      LQ L    N  S        S  P LE L L +NM                
Sbjct: 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG 478

Query: 173 CAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSEN 232
            ++LQ L L+ N  + + P    +LT L+GL L  NRL   +   +   A LE++ +S N
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLS-HNDLPANLEILDISRN 536

Query: 233 ELQGAIPREWGNLT 246
           +L    P  + +L+
Sbjct: 537 QLLAPNPDVFVSLS 550

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 74.1 bits (182), Expect = 4e-15
 Identities = 43/241 (17%), Positives = 82/241 (34%), Gaps = 22/241 (9%)

Query: 51  HSHRVTVLNISRLNLTG-TIPSQLGNLSSLQSLNLSCNRLSGSIPSAI--FTTYTLKYVS 107
           +   +T L++S+  +    +    G L+SL+S++ S N++       +      TL + S
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180

Query: 108 FRKNQLSGAFPSF------AFNTSSLQYLDFGFNTLSGEIPANICSNLPF---------- 151
              N L              F    L+ LD   N  + +I  N  + +            
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240

Query: 152 -LEYLALSQNMFHGGIPSALSNCA--YLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGN 208
            +       +       +  +  A   ++ L LS      +  +    L  LK L L  N
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300

Query: 209 RLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYK 268
           ++          L  L++++LS N L       +  L  +  + L  N +  I   +   
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360

Query: 269 L 269
           L
Sbjct: 361 L 361

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 16/137 (11%)

Query: 28  NFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCN 87
           N     W T      + G++       + VL ++   L    P    +L++L+ L+L+ N
Sbjct: 461 NMLQLAWETELCWDVFEGLS------HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514

Query: 88  RLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICS 147
           RL+  +         L+ +   +NQL    P       SL  LD   N          C 
Sbjct: 515 RLT-VLSHNDLPA-NLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFI-----CECE 564

Query: 148 NLPFLEYLALSQNMFHG 164
              F+ +L  +     G
Sbjct: 565 LSTFINWLNHTNVTIAG 581

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 93.1 bits (232), Expect = 3e-22
 Identities = 41/216 (18%), Positives = 80/216 (37%), Gaps = 12/216 (5%)

Query: 53  HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQ 112
             +  L +    ++   P     L  L+ L LS N+L   +P  +    TL+ +   +N+
Sbjct: 76  KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPK--TLQELRVHENE 132

Query: 113 LSGAFPSFAF-NTSSLQYLDFGFNTL-SGEIPANICSNLPFLEYLALSQNMFHGGIPSAL 170
           ++       F   + +  ++ G N L S  I       +  L Y+ ++            
Sbjct: 133 IT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP 191

Query: 171 SNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMSL 229
            +   L  L L  N  + V    +  L  L  L L  N +   +   S  N   L  + L
Sbjct: 192 PS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHL 247

Query: 230 SENELQGAIPREWGNLTGLGILQLSDNFLTGITPSS 265
           + N+L   +P    +   + ++ L +N ++ I  + 
Sbjct: 248 NNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 282

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 93.1 bits (232), Expect = 3e-22
 Identities = 45/213 (21%), Positives = 82/213 (38%), Gaps = 13/213 (6%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKNQL 113
             +L++    +T        NL +L +L L  N++S  I    F     L+ +   KNQL
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQL 112

Query: 114 SGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFH-GGIPS-ALS 171
               P       +LQ L    N ++ ++  ++ + L  +  + L  N     GI + A  
Sbjct: 113 K-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 172 NCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMSLS 230
               L  + ++  + + +          L  L+L GN++  ++   S   L  L  + LS
Sbjct: 169 GMKKLSYIRIADTNITTIPQG---LPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLS 224

Query: 231 ENELQGAIPREWGNLTGLGILQLSDNFLTGITP 263
            N +         N   L  L L++N L  +  
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.0 bits (216), Expect = 6e-20
 Identities = 44/216 (20%), Positives = 82/216 (37%), Gaps = 18/216 (8%)

Query: 53  HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKN 111
            ++  L +S+  L   +P ++    +LQ L +  N ++  +  ++F     +  V    N
Sbjct: 100 VKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTN 155

Query: 112 QL-SGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSA 169
            L S    + AF     L Y+      ++  IP  +  +L     L L  N       ++
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSL---TELHLDGNKITKVDAAS 211

Query: 170 LSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSL 229
           L     L +LGLS N  S V    + N   L+ L+L  N+L  ++P    +   ++++ L
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270

Query: 230 SENELQG------AIPREWGNLTGLGILQLSDNFLT 259
             N +          P           + L  N + 
Sbjct: 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 29/192 (15%), Positives = 69/192 (35%), Gaps = 41/192 (21%)

Query: 53  HRVTVLNISRLNLT-GTIPSQ-LGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRK 110
           +++ V+ +    L    I +     +  L  + ++   ++ +IP  +  +  L  +    
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPS--LTELHLDG 201

Query: 111 NQLSGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSA 169
           N+++    + +    ++L  L   FN++S  +     +N P L  L L+ N     +P  
Sbjct: 202 NKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVK-VPGG 258

Query: 170 LSNCAYLQRLGLSSNDFSGVVPKEIC--------------------------------NL 197
           L++  Y+Q + L +N+ S +   + C                                 +
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318

Query: 198 TKLKGLYLGGNR 209
                + LG  +
Sbjct: 319 YVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 8/121 (6%)

Query: 140 EIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTK 199
           ++P ++    P    L L  N           N   L  L L +N  S + P     L K
Sbjct: 45  KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 101

Query: 200 LKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPRE-WGNLTGLGILQLSDNFL 258
           L+ LYL  N+L+ E+P        L+ + + ENE+   + +  +  L  + +++L  N L
Sbjct: 102 LERLYLSKNQLK-ELP--EKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPL 157

Query: 259 T 259
            
Sbjct: 158 K 158

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 94.6 bits (236), Expect = 3e-22
 Identities = 55/208 (26%), Positives = 86/208 (41%), Gaps = 18/208 (8%)

Query: 59  NISRLNLTG---TIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
            + RL+++    +  S L  L++L+SL  + N++S   P  I T   L  +S   NQL  
Sbjct: 178 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD 235

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
              + A + ++L  LD   N +S   P    S L  L  L L  N       S L+    
Sbjct: 236 -IGTLA-SLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISN--ISPLAGLTA 288

Query: 176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ 235
           L  L L+ N    +    I NL  L  L L  N +    P    +L +L+ +    N++ 
Sbjct: 289 LTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 344

Query: 236 GAIPREWGNLTGLGILQLSDNFLTGITP 263
                   NLT +  L    N ++ +TP
Sbjct: 345 D--VSSLANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 89.3 bits (222), Expect = 2e-20
 Identities = 57/209 (27%), Positives = 83/209 (39%), Gaps = 18/209 (8%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS 114
           VT L   RL +       +  L++L  +N S N+L+   P    T   L  +    NQ++
Sbjct: 48  VTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTDITPLKNLT--KLVDILMNNNQIA 103

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCA 174
                 A N ++L  L    N ++   P     NL  L  L LS N       SALS   
Sbjct: 104 D-ITPLA-NLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISD--ISALSGLT 156

Query: 175 YLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENEL 234
            LQ+L   +        K + NLT L+ L +  N++          L  LE +  + N++
Sbjct: 157 SLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQI 211

Query: 235 QGAIPREWGNLTGLGILQLSDNFLTGITP 263
               P   G LT L  L L+ N L  I  
Sbjct: 212 SDITP--LGILTNLDELSLNGNQLKDIGT 238

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 86.2 bits (214), Expect = 2e-19
 Identities = 45/222 (20%), Positives = 76/222 (34%), Gaps = 16/222 (7%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
           T L+++   ++   P  L  L+ L  L L  N++S   P  +     L  +   +NQL  
Sbjct: 246 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED 301

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
                +   + L YL   FN +S   P    S+L  L+ L    N       S+L+N   
Sbjct: 302 -ISPISNLKN-LTYLTLYFNNISDISPV---SSLTKLQRLFFYNNKVSD--VSSLANLTN 354

Query: 176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ 235
           +  L    N  S + P  + NLT++  L L              N++    +      L 
Sbjct: 355 INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412

Query: 236 GAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKFGT 277
              P    +        ++ N  +       Y     +  G 
Sbjct: 413 --APATISDGGSYTEPDITWNLPSYT-NEVSYTFSQPVTIGK 451

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 81.2 bits (201), Expect = 1e-17
 Identities = 40/210 (19%), Positives = 75/210 (35%), Gaps = 17/210 (8%)

Query: 54  RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQL 113
            +    I++      I      L+      L    ++ ++         +  +   +  +
Sbjct: 2   PLGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVSQTDLD--QVTTLQADRLGI 58

Query: 114 SGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNC 173
                      ++L  ++F  N L+   P     NL  L  + ++ N       + L+N 
Sbjct: 59  KS--IDGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIAD--ITPLANL 111

Query: 174 AYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENE 233
             L  L L +N  + + P  + NLT L  L L  N +          L  L+ +S   N+
Sbjct: 112 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQ 166

Query: 234 LQGAIPREWGNLTGLGILQLSDNFLTGITP 263
           +    P    NLT L  L +S N ++ I+ 
Sbjct: 167 VTDLKP--LANLTTLERLDISSNKVSDISV 194

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 29/159 (18%), Positives = 52/159 (32%), Gaps = 32/159 (20%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
           T L +   N++   P  + +L+ LQ L    N++S     A  T   + ++S   NQ+S 
Sbjct: 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTN--INWLSAGHNQISD 367

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
                A N + +  L       +   P N  +N+     +           P+ +S+   
Sbjct: 368 -LTPLA-NLTRITQLGLNDQAWTN-APVNYKANVSIPNTVKNVTGALI--APATISDGGS 422

Query: 176 LQRLGLSSN-----------------------DFSGVVP 191
                ++ N                        FSG V 
Sbjct: 423 YTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.4 bits (235), Expect = 3e-22
 Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 52  SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRK 110
           S    +LN+    +     +   +L  L+ L LS N +  +I    F     L  +    
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD 121

Query: 111 NQLSGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPS- 168
           N+L+   P+ AF   S L+ L    N +   IP+   + +P L  L L +      I   
Sbjct: 122 NRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEG 179

Query: 169 ALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELM 227
           A    + L+ L L+  +   +    +  L KL  L L GN L   I   S   L  L+ +
Sbjct: 180 AFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKL 236

Query: 228 SLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK 274
            + ++++Q      + NL  L  + L+ N LT + P  ++  L  ++
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL-PHDLFTPLHHLE 282

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 78.3 bits (193), Expect = 1e-16
 Identities = 49/184 (26%), Positives = 71/184 (38%), Gaps = 10/184 (5%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFT-TYTLKYVS-FRKNQL 113
             L +    LT         LS L+ L L  N +  SIPS  F    +L+ +      +L
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRL 173

Query: 114 SGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSN 172
           S      AF   S+L+YL+     L  EIP    + L  L+ L LS N      P +   
Sbjct: 174 S-YISEGAFEGLSNLRYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPGSFQG 229

Query: 173 CAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMSLSE 231
             +LQ+L +  +    +      NL  L  + L  N L   +P +    L  LE + L  
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHH 288

Query: 232 NELQ 235
           N   
Sbjct: 289 NPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 6/132 (4%)

Query: 140 EIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTK 199
           E+P  I         L L +N       ++  +  +L+ L LS N    +       L  
Sbjct: 57  EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN 113

Query: 200 LKGLYLGGNRLQGEIPRES-GNLAELELMSLSENELQGAIPREWGNLTGLGILQLSD-NF 257
           L  L L  NRL   IP  +   L++L+ + L  N ++      +  +  L  L L +   
Sbjct: 114 LNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR 172

Query: 258 LTGITPSSIYKL 269
           L+ I+  +   L
Sbjct: 173 LSYISEGAFEGL 184

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 91.6 bits (228), Expect = 7e-22
 Identities = 52/231 (22%), Positives = 90/231 (38%), Gaps = 10/231 (4%)

Query: 48  CDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYV 106
           C  ++      +  +  L   +P  +   ++ Q + L  NR+S  +P+A F     L  +
Sbjct: 6   CVCYNEPKVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTIL 61

Query: 107 SFRKNQLSGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGG 165
               N L+    + AF   + L+ LD   N     +       L  L  L L +      
Sbjct: 62  WLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120

Query: 166 IPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAEL 224
            P      A LQ L L  N    +      +L  L  L+L GNR+   +P  +   L  L
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSL 179

Query: 225 ELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKF 275
           + + L +N +    P  + +L  L  L L  N L+ + P+     L ++++
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL-PTEALAPLRALQY 229

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.7 bits (205), Expect = 1e-18
 Identities = 49/184 (26%), Positives = 74/184 (40%), Gaps = 8/184 (4%)

Query: 53  HRVTVLNISRLNLTGTIPSQ-LGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRK 110
             +T+L +    L   I +     L+ L+ L+LS N    S+  A F     L  +   +
Sbjct: 56  RNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114

Query: 111 NQLSGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSA 169
             L        F   ++LQYL    N L   +P +   +L  L +L L  N        A
Sbjct: 115 CGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERA 172

Query: 170 LSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMS 228
                 L RL L  N  + V P    +L +L  LYL  N L   +P E+   L  L+ + 
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLR 231

Query: 229 LSEN 232
           L++N
Sbjct: 232 LNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 7/111 (6%)

Query: 56  TVLNISRLNLTGTIPSQ-LGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKNQL 113
             L +    L   +P     +L +L  L L  NR+S S+P   F     L  +   +N++
Sbjct: 132 QYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRV 189

Query: 114 SGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFH 163
           +      AF +   L  L    N LS  +P    + L  L+YL L+ N + 
Sbjct: 190 A-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 93.9 bits (233), Expect = 8e-22
 Identities = 45/220 (20%), Positives = 86/220 (39%), Gaps = 32/220 (14%)

Query: 54  RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQL 113
           +  +   +R      +   L  ++    L L+   LS S+P  +     +  +   +N L
Sbjct: 38  KQALPGENRNEAVSLLKECL--INQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNAL 92

Query: 114 SGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNC 173
             + P      +SL+YLD   N LS  +P    S    L++L +  N     +P   +  
Sbjct: 93  I-SLPE---LPASLEYLDACDNRLS-TLPELPAS----LKHLDVDNNQLT-MLPELPAL- 141

Query: 174 AYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENE 233
             L+ +   +N  + ++P+   +L     L +  N+L   +P    +L  L    +S N 
Sbjct: 142 --LEYINADNNQLT-MLPELPTSLEV---LSVRNNQLT-FLPELPESLEAL---DVSTNL 191

Query: 234 LQGAIPREWGNLTGL----GILQLSDNFLTGITPSSIYKL 269
           L+ ++P                +  +N +T I P +I  L
Sbjct: 192 LE-SLPAVPVRNHHSEETEIFFRCRENRITHI-PENILSL 229

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 89.6 bits (222), Expect = 2e-20
 Identities = 45/209 (21%), Positives = 80/209 (38%), Gaps = 27/209 (12%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS 114
           +TVL I++  L  ++P    +L   + L+   NRLS ++P    +   LK++    NQL+
Sbjct: 82  ITVLEITQNALI-SLPELPASL---EYLDACDNRLS-TLPELPAS---LKHLDVDNNQLT 133

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCA 174
              P      + L+Y++   N L+  +P    S    LE L++  N     +P    +  
Sbjct: 134 -MLPE---LPALLEYINADNNQLT-MLPELPTS----LEVLSVRNNQL-TFLPELPES-- 181

Query: 175 YLQRLGLSSNDFSGVVPKEICNLTKLK----GLYLGGNRLQGEIPRESGNLAELELMSLS 230
            L+ L +S+N    + P         +          NR+   IP    +L     + L 
Sbjct: 182 -LEALDVSTNLLESL-PAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238

Query: 231 ENELQGAIPREWGNLTGLGILQLSDNFLT 259
           +N L   I       T          + +
Sbjct: 239 DNPLSSRIRESLSQQTAQPDYHGPRIYFS 267

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 93.8 bits (233), Expect = 9e-22
 Identities = 52/214 (24%), Positives = 71/214 (33%), Gaps = 34/214 (15%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
             L +S   LT ++P     L  L   +     L             L  +    NQL+ 
Sbjct: 84  RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLTS 135

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
                      LQ L    N L+  +PA        L  L    N     +P   S    
Sbjct: 136 LPVLP----PGLQELSVSDNQLA-SLPALPSE----LCKLWAYNNQLT-SLPMLPSG--- 182

Query: 176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ 235
           LQ L +S N  +  +P     L K   L+   NRL   +P     L EL    +S N L 
Sbjct: 183 LQELSVSDNQLA-SLPTLPSELYK---LWAYNNRLT-SLPALPSGLKEL---IVSGNRLT 234

Query: 236 GAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
            ++P     L     L +S N LT + P     L
Sbjct: 235 -SLPVLPSELK---ELMVSGNRLTSL-PMLPSGL 263

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 89.2 bits (221), Expect = 4e-20
 Identities = 53/215 (24%), Positives = 84/215 (39%), Gaps = 34/215 (15%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS 114
           +T L I   NLT ++P+    L   ++L +S N+L+ S+P        L   S     L 
Sbjct: 63  ITTLVIPDNNLT-SLPALPPEL---RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP 117

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCA 174
            A P      S L  L    N L+  +P         L+ L++S N     +P+  S   
Sbjct: 118 -ALP------SGLCKLWIFGNQLT-SLPVLPPG----LQELSVSDNQL-ASLPALPSE-- 162

Query: 175 YLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENEL 234
            L +L   +N  +  +P     L +   L +  N+L   +P     L +L       N L
Sbjct: 163 -LCKLWAYNNQLT-SLPMLPSGLQE---LSVSDNQLA-SLPTLPSELYKLW---AYNNRL 213

Query: 235 QGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
             ++P     L     L +S N LT + P    +L
Sbjct: 214 T-SLPALPSGLK---ELIVSGNRLTSL-PVLPSEL 243

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 84.2 bits (208), Expect = 2e-18
 Identities = 38/194 (19%), Positives = 73/194 (37%), Gaps = 29/194 (14%)

Query: 76  LSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFN 135
            +    LN+  + L+ ++P  +     +  +    N L+ + P+       L+ L+   N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPA---LPPELRTLEVSGN 91

Query: 136 TLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEIC 195
            L+  +P      L  L   +         +P+  S    L +L +  N  +  +P    
Sbjct: 92  QLT-SLPVLP-PGLLELSIFSNPLTH----LPALPSG---LCKLWIFGNQLT-SLPVLPP 141

Query: 196 NLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSD 255
            L +   L +  N+L   +P     L +L       N+L  ++P     L     L +SD
Sbjct: 142 GLQE---LSVSDNQLA-SLPALPSELCKLW---AYNNQLT-SLPMLPSGLQ---ELSVSD 190

Query: 256 NFLTGITPSSIYKL 269
           N L  + P+   +L
Sbjct: 191 NQLASL-PTLPSEL 203

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 80.7 bits (199), Expect = 2e-17
 Identities = 44/218 (20%), Positives = 79/218 (36%), Gaps = 25/218 (11%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
             L      LT ++P     L   Q L++S N+L+ S+P+       L  +    N+L+ 
Sbjct: 164 CKLWAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPTLPSE---LYKLWAYNNRLT- 214

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
           + P+     S L+ L    N L+  +P         L+ L +S N     +P   S    
Sbjct: 215 SLPALP---SGLKELIVSGNRLT-SLPVLPSE----LKELMVSGNRL-TSLPMLPSG--- 262

Query: 176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMS---LSEN 232
           L  L +  N  +  +P+ + +L+    + L GN L     +    +      S   +  +
Sbjct: 263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFD 321

Query: 233 ELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL 270
               + PRE   L       L         P+  + + 
Sbjct: 322 MAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 193 EICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQ 252
             C       L +G + L   +P        +  + + +N L  ++P     L     L+
Sbjct: 35  RACLNNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPELR---TLE 87

Query: 253 LSDNFLTGITPSSIYKL 269
           +S N LT + P     L
Sbjct: 88  VSGNQLTSL-PVLPPGL 103

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 92.5 bits (230), Expect = 2e-21
 Identities = 50/221 (22%), Positives = 96/221 (43%), Gaps = 10/221 (4%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKNQLS 114
            V +    + T +IPS L   ++++SL+LS N+++  I          L+ +  + ++++
Sbjct: 8   GVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRIN 63

Query: 115 GAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHG-GIPSALSN 172
                 AF +  SL++LD   N LS  + ++    L  L+YL L  N +   G+ S   N
Sbjct: 64  -TIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 173 CAYLQRLGLSS-NDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSE 231
              LQ L + +   FS +   +   LT L  L +    L+    +   ++ ++  ++L  
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 232 NELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFS 272
           +E    +      L+ +  L+L D  L     S +     S
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVS 222

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 92.1 bits (229), Expect = 3e-21
 Identities = 38/218 (17%), Positives = 80/218 (36%), Gaps = 3/218 (1%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS 114
           +  L++S   +T      L   ++LQ L L  +R++     A ++  +L+++    N LS
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87

Query: 115 GAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIP-SALSN 172
            +  S  F   SSL+YL+   N        ++  NL  L+ L +        I     + 
Sbjct: 88  -SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 173 CAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSEN 232
              L  L + +        + + ++  +  L L  +     +   +  L+ +  + L + 
Sbjct: 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206

Query: 233 ELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL 270
            L                ++      + +T  S  +LL
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 86.3 bits (214), Expect = 3e-19
 Identities = 45/220 (20%), Positives = 87/220 (39%), Gaps = 16/220 (7%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFT-TYTLKYVSFRKNQL 113
           +  L+I +  L   + +    L  ++ + +  +++   +P +      +L+++   +N +
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLM 346

Query: 114 SGAF---PSFAFNTSSLQYLDFGFNTLSG-EIPANICSNLPFLEYLALSQNMFHGGIPSA 169
              +    +      SLQ L    N L   +    I   L  L  L +S+N FH  +P +
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDS 405

Query: 170 LSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSL 229
                 ++ L LSS     VV    C    L+ L +  N L          L EL    +
Sbjct: 406 CQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSNNNLD-SFSLFLPRLQEL---YI 458

Query: 230 SENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
           S N+L+  +P +      L ++++S N L  +      +L
Sbjct: 459 SRNKLK-TLP-DASLFPVLLVMKISRNQLKSVPDGIFDRL 496

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.8 bits (197), Expect = 4e-17
 Identities = 45/209 (21%), Positives = 80/209 (38%), Gaps = 16/209 (7%)

Query: 53  HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLS--GSIPSAIFTTYT-LKYVSFR 109
            +V  + +    +     S   +L SL+ L+LS N +       SA    +  L+ +   
Sbjct: 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369

Query: 110 KNQLS--GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIP 167
           +N L              +L  LD   NT    +P + C     + +L LS         
Sbjct: 370 QNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDS-CQWPEKMRFLNLSSTGIRVVKT 427

Query: 168 SALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELM 227
                   L+ L +S+N+           L +L+ LY+  N+L+  +P ++     L +M
Sbjct: 428 CIPQT---LEVLDVSNNNLDSFSL----FLPRLQELYISRNKLK-TLP-DASLFPVLLVM 478

Query: 228 SLSENELQGAIPREWGNLTGLGILQLSDN 256
            +S N+L+      +  LT L  + L  N
Sbjct: 479 KISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 76.3 bits (188), Expect = 6e-16
 Identities = 40/198 (20%), Positives = 65/198 (32%), Gaps = 32/198 (16%)

Query: 75  NLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGF 134
           +  +    +      + SIPS +                            +++ LD  F
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSGLTA--------------------------AMKSLDLSF 35

Query: 135 NTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEI 194
           N ++  I          L+ L L  +  +     A  +   L+ L LS N  S +     
Sbjct: 36  NKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF 94

Query: 195 CNLTKLKGLYLGGNRLQGEIPRES--GNLAELELMSLSENELQGAIPREW-GNLTGLGIL 251
             L+ LK L L GN  Q  +   S   NL  L+ + +   E    I R     LT L  L
Sbjct: 95  GPLSSLKYLNLMGNPYQ-TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153

Query: 252 QLSDNFLTGITPSSIYKL 269
           ++    L      S+  +
Sbjct: 154 EIKALSLRNYQSQSLKSI 171

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.4 bits (183), Expect = 3e-15
 Identities = 40/206 (19%), Positives = 69/206 (33%), Gaps = 3/206 (1%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFT-TYTLKYVSFRKNQLS 114
            VL +    +         +L SL+ L+LS N LS S+ S+ F    +LKY++   N   
Sbjct: 53  QVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQ 111

Query: 115 GAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNC 173
               +  F N ++LQ L  G      EI     + L  L  L +           +L + 
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171

Query: 174 AYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENE 233
             +  L L  ++ + ++      L+ ++ L L    L                M      
Sbjct: 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231

Query: 234 LQGAIPREWGNLTGLGILQLSDNFLT 259
                   +  L  L    L  + + 
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVE 257

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 41/232 (17%), Positives = 78/232 (33%), Gaps = 24/232 (10%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS- 114
             L +        +      LSS++ L L    L+    S +        +     + S 
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234

Query: 115 ------GAFPSFAFNTSSLQYLDFGFNTLSG-----EIPANICSNLPFLE-----YLALS 158
                             L  ++F   TL+G        +++ S L  +E      L + 
Sbjct: 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294

Query: 159 QNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES 218
           Q      + +  S    ++R+ + ++    V      +L  L+ L L  N +  E  + S
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 219 ---GNLAELELMSLSENELQGAIPREWG---NLTGLGILQLSDNFLTGITPS 264
              G    L+ + LS+N L+ ++ +       L  L  L +S N    +  S
Sbjct: 355 ACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFHPMPDS 405

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.4 bits (170), Expect = 1e-13
 Identities = 26/229 (11%), Positives = 68/229 (29%), Gaps = 20/229 (8%)

Query: 56  TVLNISRLNLTGTIPSQ-LGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS 114
             L I  +     I       L+SL  L +    L      ++ +   + +++   ++ +
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLAL----------------- 157
                FA   SS++YL+     L+     +          +                   
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244

Query: 158 -SQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPR 216
                          +C        + ++   V          ++ L++    L  ++  
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304

Query: 217 ESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSS 265
               L +++ +++  +++         +L  L  L LS+N +      +
Sbjct: 305 VYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 68.2 bits (167), Expect = 3e-13
 Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 13/161 (8%)

Query: 53  HRVTVLNISRLNLT--GTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRK 110
             +  L +S+ +L         L  L +L SL++S N     +P +      +++++   
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSS 419

Query: 111 NQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSAL 170
             +     +      +L+ LD   N L      +    LP L+ L +S+N     +P A 
Sbjct: 420 TGIR-VVKTCIP--QTLEVLDVSNNNLD-----SFSLFLPRLQELYISRNKLKT-LPDA- 469

Query: 171 SNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ 211
           S    L  + +S N    V       LT L+ ++L  N   
Sbjct: 470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.1 bits (133), Expect = 7e-09
 Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 6/112 (5%)

Query: 166 IPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAEL 224
           IPS L+  A ++ L LS N  + +   ++     L+ L L  +R+   I  ++  +L  L
Sbjct: 20  IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSL 76

Query: 225 ELMSLSENELQGAIPREW-GNLTGLGILQLSDNFLTGITPSSIYKLLFSIKF 275
           E + LS+N L  ++   W G L+ L  L L  N    +  +S++  L +++ 
Sbjct: 77  EHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.5 bits (225), Expect = 3e-21
 Identities = 51/245 (20%), Positives = 92/245 (37%), Gaps = 31/245 (12%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTT-YTLKYVSFRKNQL 113
            T+L++   +++         L  L +L L  N++S  I    F+    L+ +   KN L
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHL 114

Query: 114 SGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQN-MFHGGIPSA--- 169
               P      SSL  L    N +  ++P  + S L  +  + +  N + + G       
Sbjct: 115 V-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 170 --------LSNC----------AYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ 211
                   +S              L  L L  N    +  +++   +KL  L LG N+++
Sbjct: 171 GLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230

Query: 212 GEIPRES-GNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL 270
             I   S   L  L  + L  N+L   +P    +L  L ++ L  N +T +  +    + 
Sbjct: 231 -MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG 288

Query: 271 FSIKF 275
           F +K 
Sbjct: 289 FGVKR 293

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 85.8 bits (213), Expect = 1e-19
 Identities = 50/216 (23%), Positives = 82/216 (37%), Gaps = 19/216 (8%)

Query: 53  HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKN 111
            ++  L IS+ +L   IP  L   SSL  L +  NR+   +P  +F+    +  +    N
Sbjct: 102 RKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGN 157

Query: 112 QL-SGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSAL 170
            L +  F   AF+   L YL      L+  IP ++   L     L L  N         L
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPETL---NELHLDHNKIQAIELEDL 213

Query: 171 SNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLS 230
              + L RLGL  N    +    +  L  L+ L+L  N+L   +P    +L  L+++ L 
Sbjct: 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272

Query: 231 ENELQGAIPRE-------WGNLTGLGILQLSDNFLT 259
            N +   +                   + L +N + 
Sbjct: 273 TNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 37/168 (22%), Positives = 62/168 (36%), Gaps = 21/168 (12%)

Query: 54  RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKNQ 112
           ++  L IS   LT  IP  L    +L  L+L  N++  +I       Y+ L  +    NQ
Sbjct: 173 KLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQ 228

Query: 113 LSGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQN--------MFH 163
           +     + +     +L+ L    N LS  +PA +  +L  L+ + L  N         F 
Sbjct: 229 IR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGL-PDLKLLQVVYLHTNNITKVGVNDFC 285

Query: 164 GGIPSALSNCAYLQRLGLSSN--DFSGVVPKEICNLTKLKGLYLGGNR 209
                     AY   + L +N   +  V P     +T    +  G  +
Sbjct: 286 P--VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 8/121 (6%)

Query: 140 EIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTK 199
            +P  I    P    L L  N              +L  L L +N  S +  K    L K
Sbjct: 47  AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103

Query: 200 LKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREW-GNLTGLGILQLSDNFL 258
           L+ LY+  N L  EIP      + L  + + +N ++  +P+     L  +  +++  N L
Sbjct: 104 LQKLYISKNHLV-EIP--PNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPL 159

Query: 259 T 259
            
Sbjct: 160 E 160

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 91.7 bits (228), Expect = 5e-21
 Identities = 44/211 (20%), Positives = 74/211 (35%), Gaps = 10/211 (4%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS 114
              L++S   L         +   LQ L+LS   +      A  +   L  +    N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 115 GAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMF-HGGIPSALSN 172
                 AF   SSLQ L      L+  +      +L  L+ L ++ N+     +P   SN
Sbjct: 90  S-LALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 173 CAYLQRLGLSSNDFSGVVPKEICNLTKLKG----LYLGGNRLQGEIPRESGNLAELELMS 228
              L+ L LSSN    +   ++  L ++      L L  N +   I   +     L  ++
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLT 206

Query: 229 LSENELQGAIPRE-WGNLTGLGILQLSDNFL 258
           L  N     + +     L GL + +L     
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 88.6 bits (220), Expect = 4e-20
 Identities = 52/238 (21%), Positives = 94/238 (39%), Gaps = 12/238 (5%)

Query: 41  CNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTT 100
                V    ++     L +         P+    L SL+ L  + N+   +  S +   
Sbjct: 292 VTIERVKDFSYNFGWQHLELVNCKFGQ-FPT--LKLKSLKRLTFTSNKGG-NAFSEVDLP 347

Query: 101 YTLKYVSFRKNQLSG-AFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS 158
            +L+++   +N LS     S +   T+SL+YLD  FN +   + +N    L  LE+L   
Sbjct: 348 -SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQ 404

Query: 159 QNMFHGGIP-SALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRE 217
            +        S   +   L  L +S              L+ L+ L + GN  Q     +
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

Query: 218 S-GNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK 274
               L  L  + LS+ +L+   P  + +L+ L +L ++ N L  + P  I+  L S++
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV-PDGIFDRLTSLQ 521

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 87.8 bits (218), Expect = 8e-20
 Identities = 47/226 (20%), Positives = 85/226 (37%), Gaps = 14/226 (6%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKNQLS 114
                  LN    IP  L    S ++L+LS N L   + S  F ++  L+ +   + ++ 
Sbjct: 10  ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 115 GAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNC 173
                 A+ + S L  L    N +   +     S L  L+ L   +          + + 
Sbjct: 66  -TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 174 AYLQRLGLSSNDFSGV-VPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELM----S 228
             L+ L ++ N      +P+   NLT L+ L L  N++Q     +   L ++ L+     
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 229 LSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK 274
           LS N +   I         L  L L +NF +     +  + L  ++
Sbjct: 184 LSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 83.2 bits (206), Expect = 4e-18
 Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 2/162 (1%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKNQLS 114
             L++S   +  T+ S    L  L+ L+   + L      ++F +   L Y+        
Sbjct: 376 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCA 174
            AF       SSL+ L    N+       +I + L  L +L LSQ       P+A ++ +
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 175 YLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPR 216
            LQ L ++SN    V       LT L+ ++L  N      PR
Sbjct: 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.1 bits (198), Expect = 3e-17
 Identities = 47/220 (21%), Positives = 81/220 (36%), Gaps = 13/220 (5%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKNQLS 114
            VL++SR  +         +LS L +L L+ N +  S+    F+  + L+ +   +  L+
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA 113

Query: 115 GAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNC 173
               +F   +  +L+ L+   N +         SNL  LE+L LS N       + L   
Sbjct: 114 S-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 174 AYLQ----RLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMS 228
             +      L LS N  +  +        +L  L L  N     + +     LA LE+  
Sbjct: 173 HQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 229 LSENELQGA---IPREWGNLTGLGILQLSDNFLTGITPSS 265
           L   E +        +   L GL  L + +  L  +    
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.1 bits (172), Expect = 8e-14
 Identities = 34/234 (14%), Positives = 70/234 (29%), Gaps = 21/234 (8%)

Query: 54  RVTVLNISRLNLTGTIPSQ-LGNLSSLQSLNLSCNRLSG-----SIPSAIF---TTYTLK 104
           R+  L +     +  +    +  L+ L+   L                +        T++
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 105 YVSFRKNQLSGAFPSFAFNT-SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFH 163
                            FN  +++        T+      +       LE +      F 
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 164 GGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ--GEIPRESGNL 221
                +L      +RL  +SN       +   +L  L+ L L  N L   G   +     
Sbjct: 321 TLKLKSL------KRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 222 AELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKF 275
             L+ + LS N +   +   +  L  L  L    + L  ++  S++  L ++ +
Sbjct: 373 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 2/116 (1%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKNQLS 114
             L+IS  +           LSSL+ L ++ N    +    IFT    L ++   + QL 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSAL 170
              P+   + SSLQ L+   N L   +P  I   L  L+ + L  N +    P   
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.9 bits (218), Expect = 3e-20
 Identities = 42/223 (18%), Positives = 83/223 (37%), Gaps = 14/223 (6%)

Query: 53  HRVTVLNISRLNLTGTIPSQL-GNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRK 110
             +  L ++   +  TI      +L SL+ L+LS N LS ++ S+ F   + L +++   
Sbjct: 76  VNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLG 133

Query: 111 NQLSGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSA 169
           N       +  F + + LQ L  G      +I     + L FLE L +  +      P +
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193

Query: 170 LSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQG----EIPRES----GNL 221
           L +   +  L L       ++   +   + ++ L L    L      E+           
Sbjct: 194 LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKK 253

Query: 222 AELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPS 264
                + +++  L   + +    ++GL  L+ S N L  +   
Sbjct: 254 FTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDG 295

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.4 bits (183), Expect = 2e-15
 Identities = 42/197 (21%), Positives = 75/197 (38%), Gaps = 8/197 (4%)

Query: 76  LSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAF-NTSSLQYLDFGF 134
                    S   L+ SIPS +     +K +    N+++    +       +LQ L    
Sbjct: 30  CDRNGICKGSSGSLN-SIPSGLTEA--VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTS 85

Query: 135 NTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEI 194
           N ++  I  +  S+L  LE+L LS N       S     + L  L L  N +  +    +
Sbjct: 86  NGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL 144

Query: 195 -CNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMSLSENELQGAIPREWGNLTGLGILQ 252
             +LTKL+ L +G      +I R+    L  LE + +  ++LQ   P+   ++  +  L 
Sbjct: 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204

Query: 253 LSDNFLTGITPSSIYKL 269
           L       +    +   
Sbjct: 205 LHMKQHILLLEIFVDVT 221

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 63.6 bits (155), Expect = 7e-12
 Identities = 23/148 (15%), Positives = 43/148 (29%), Gaps = 12/148 (8%)

Query: 73  LGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKNQLSGAFPSFAF-NTSSLQYL 130
              L+ L+ L +  + L  S       +   + ++     Q            TSS++ L
Sbjct: 170 FAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECL 227

Query: 131 DFGFNTLSG-------EIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSS 183
           +     L             N          + ++       +   L+  + L  L  S 
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ-VMKLLNQISGLLELEFSR 286

Query: 184 NDFSGVVPKEICNLTKLKGLYLGGNRLQ 211
           N    V       LT L+ ++L  N   
Sbjct: 287 NQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 87.7 bits (218), Expect = 7e-20
 Identities = 56/234 (23%), Positives = 89/234 (38%), Gaps = 45/234 (19%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
             L  S  +LT  +P    +L SL   N +   LS   P        L+Y+    NQL  
Sbjct: 94  ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLE- 144

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICS------------------NLPFLEYLAL 157
             P    N+S L+ +D   N+L  ++P    S                  NLPFL  +  
Sbjct: 145 KLPEL-QNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYA 202

Query: 158 SQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRE 217
             N     +P    +   L+ +   +N        E+ NL  L  +Y   N L+  +P  
Sbjct: 203 DNNSLK-KLPDLPLS---LESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDL 255

Query: 218 SGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGIT--PSSIYKL 269
             +L  L +      +L    P    +LT    L +S+N  +G++  P ++Y L
Sbjct: 256 PPSLEALNVRDNYLTDL----PELPQSLT---FLDVSENIFSGLSELPPNLYYL 302

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 80.0 bits (198), Expect = 3e-17
 Identities = 41/221 (18%), Positives = 70/221 (31%), Gaps = 40/221 (18%)

Query: 64  NLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFN 123
           NLT  +P +  N+ S      + +    + P        +     R              
Sbjct: 22  NLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD---------- 70

Query: 124 TSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSS 183
                 L+     LS  +P       P LE L  S N     +P    +   L     + 
Sbjct: 71  -RQAHELELNNLGLS-SLPELP----PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNL 123

Query: 184 NDFSGVVPK---------------EICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMS 228
              S + P                E+ N + LK + +  N L+ ++P    +L  +   +
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI---A 179

Query: 229 LSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
              N+L+  +P E  NL  L  +   +N L  + P     L
Sbjct: 180 AGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKL-PDLPLSL 217

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 44/210 (20%), Positives = 76/210 (36%), Gaps = 34/210 (16%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
             LN+    LT  +P    +L+ L       + LS   P+       L Y++   N++  
Sbjct: 260 EALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSNEIR- 310

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
              S      SL+ L+   N L  E+PA        LE L  S N     +P    N   
Sbjct: 311 ---SLCDLPPSLEELNVSNNKLI-ELPALPPR----LERLIASFNHLA-EVPELPQN--- 358

Query: 176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ 235
           L++L +  N      P    ++  L+      + L  E+P    NL +L    +  N L+
Sbjct: 359 LKQLHVEYNPLR-EFPDIPESVEDLR----MNSHLA-EVPELPQNLKQL---HVETNPLR 409

Query: 236 GAIPREWGNLTGLGILQLSDNFLTGITPSS 265
              P    ++     L+++   +      +
Sbjct: 410 -EFPDIPESVE---DLRMNSERVVDPYEFA 435

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.2 bits (149), Expect = 7e-11
 Identities = 32/179 (17%), Positives = 63/179 (35%), Gaps = 26/179 (14%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
             LN S   +  ++     +L   + LN+S N+L   +P+       L+ +    N L+ 
Sbjct: 300 YYLNASSNEIR-SLCDLPPSL---EELNVSNNKLI-ELPALPPR---LERLIASFNHLA- 350

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
                     +L+ L   +N L  E P    S    +E L ++ ++    +P    N   
Sbjct: 351 ---EVPELPQNLKQLHVEYNPLR-EFPDIPES----VEDLRMNSHLAE--VPELPQN--- 397

Query: 176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENEL 234
           L++L + +N      P    ++  L    +   R+            +LE      +  
Sbjct: 398 LKQLHVETNPLR-EFPDIPESVEDL---RMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 8e-07
 Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 18/115 (15%)

Query: 167 PSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELEL 226
           P  +SN  +LQ     S++ +  +P E  N+      Y   +  +   P  +G   E+ +
Sbjct: 5   PRNVSNT-FLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 227 MSLSENELQG------------AIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
             L +   +             ++P    +L     L  S N LT + P     L
Sbjct: 63  SRLRDCLDRQAHELELNNLGLSSLPELPPHLE---SLVASCNSLTEL-PELPQSL 113

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 1/73 (1%)

Query: 190 VPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLG 249
           +     + T L+      + L  E+P E+ N+        + +E +   P   G    + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 250 ILQLSDNFLTGIT 262
           + +L D       
Sbjct: 62  VSRLRDCLDRQAH 74

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 24/132 (18%), Positives = 38/132 (28%), Gaps = 18/132 (13%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
             L  S  +L   +P    NL   + L++  N L    P    +   L+      N    
Sbjct: 340 ERLIASFNHLA-EVPELPQNL---KQLHVEYNPLR-EFPDIPESVEDLRM-----NSHLA 389

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
             P       +L+ L    N L  E P    S    +E L ++          A      
Sbjct: 390 EVPELP---QNLKQLHVETNPLR-EFPDIPES----VEDLRMNSERVVDPYEFAHETTDK 441

Query: 176 LQRLGLSSNDFS 187
           L+      +   
Sbjct: 442 LEDDVFEHHHHH 453

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 82.5 bits (204), Expect = 1e-18
 Identities = 44/189 (23%), Positives = 74/189 (39%), Gaps = 11/189 (5%)

Query: 75  NLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGF 134
            ++S   +N     L+ ++P  +        +   +N L     +     + L  L+   
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 135 NTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEI 194
             L+ ++  +    LP L  L LS N     +P        L  L +S N  + +    +
Sbjct: 65  AELT-KLQVD--GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 195 CNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMSLSENELQGAIPRE-WGNLTGLGILQ 252
             L +L+ LYL GN L+  +P        +LE +SL+ N L   +P      L  L  L 
Sbjct: 121 RGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLL 178

Query: 253 LSDNFLTGI 261
           L +N L  I
Sbjct: 179 LQENSLYTI 187

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 75.9 bits (187), Expect = 3e-16
 Identities = 55/203 (27%), Positives = 76/203 (37%), Gaps = 12/203 (5%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKNQLS 114
             +N  + NLT  +P  L        L+LS N L  +   A    YT L  ++  + +L+
Sbjct: 13  LEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT 68

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCA 174
                       L  LD   N L   +P      LP L  L +S N        AL    
Sbjct: 69  -KLQVDG-TLPVLGTLDLSHNQLQ-SLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 175 YLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMSLSENE 233
            LQ L L  N+   + P  +    KL+ L L  N L  E+P      L  L+ + L EN 
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS 183

Query: 234 LQGAIPREWGNLTGLGILQLSDN 256
           L   IP+ +     L    L  N
Sbjct: 184 LY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.7 bits (132), Expect = 5e-09
 Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 142 PANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLK 201
           P    S +     +   +      +P  L        L LS N         +   T+L 
Sbjct: 2   PICEVSKVASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 202 GLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGI 261
            L L    L  ++    G L  L  + LS N+LQ ++P     L  L +L +S N LT +
Sbjct: 59  QLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL 115

Query: 262 TP 263
             
Sbjct: 116 PL 117

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 9/142 (6%)

Query: 123 NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLS 182
             +S   ++     L+  +P ++  +      L LS+N+ +    + L     L +L L 
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLPKDT---TILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 183 SNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREW 242
             + + +       L  L  L L  N+LQ  +P     L  L ++ +S N L  ++P   
Sbjct: 64  RAELTKLQVDG--TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGA 119

Query: 243 -GNLTGLGILQLSDNFLTGITP 263
              L  L  L L  N L  + P
Sbjct: 120 LRGLGELQELYLKGNELKTLPP 141

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 82.9 bits (205), Expect = 3e-18
 Identities = 42/242 (17%), Positives = 77/242 (31%), Gaps = 27/242 (11%)

Query: 52  SHRVTVLNISRLNLTG--TIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSF 108
           S            L     +P+       +  ++LS N ++  +    F+    L+++  
Sbjct: 9   SVIGYNAICINRGLHQVPELPA------HVNYVDLSLNSIA-ELNETSFSRLQDLQFLKV 61

Query: 109 RKNQLSGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGI- 166
            +        +  F   SSL  L   +N    ++     + L  LE L L+Q    G + 
Sbjct: 62  EQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVL 120

Query: 167 -PSALSNCAYLQRLGLSSNDFSGVVPKEI-CNLTKLKGLYLGGNRLQGEIPRE------S 218
             +       L+ L L  N+   + P     N+ +   L L  N+++  I  E       
Sbjct: 121 SGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQG 179

Query: 219 GNLAELELM-----SLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSI 273
            +   L L       ++E  L           T +  L LS N          +  +   
Sbjct: 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239

Query: 274 KF 275
           K 
Sbjct: 240 KI 241

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 75.6 bits (186), Expect = 1e-15
 Identities = 46/223 (20%), Positives = 87/223 (39%), Gaps = 20/223 (8%)

Query: 51  HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYV-SFR 109
               +T+ +++   L           +S+ +L+LS N    S+    F       + S  
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245

Query: 110 KNQLSGAFPSFAFN--------------TSSLQYLDFGFNTLSGEIPANICSNLPFLEYL 155
            +       SF                  S ++  D   + +   +  ++ S+   LE L
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQL 304

Query: 156 ALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIP 215
            L+QN  +    +A     +L +L LS N    +  +   NL KL+ L L  N ++  + 
Sbjct: 305 TLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALG 363

Query: 216 RES-GNLAELELMSLSENELQGAIPRE-WGNLTGLGILQLSDN 256
            +S   L  L+ ++L  N+L+ ++P   +  LT L  + L  N
Sbjct: 364 DQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 72.5 bits (178), Expect = 1e-14
 Identities = 41/221 (18%), Positives = 74/221 (33%), Gaps = 28/221 (12%)

Query: 75  NLSSLQSLNLSCNRLSGSIPSAIFTT-----------YTLKYVSFRKNQLSGAFPSFAFN 123
           N+     L+L+ N++  SI                   ++      +  L        F 
Sbjct: 152 NMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210

Query: 124 TSSLQYLDFGFNTLSGEIPANICSNLPF--LEYLALSQNM-----FHGGIPSALSNCAY- 175
            +S+  LD   N     +       +    ++ L LS +      F         N  + 
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 176 ------LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMS 228
                 ++   LS +    ++     + T L+ L L  N +  +I   +   L  L  ++
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLN 329

Query: 229 LSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
           LS+N L     R + NL  L +L LS N +  +   S   L
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 65.2 bits (159), Expect = 3e-12
 Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 5/137 (3%)

Query: 77  SSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKNQLSGAFPSFAF-NTSSLQYLDFGF 134
           S +++ +LS +++  ++  ++F+ +T L+ ++  +N+++      AF   + L  L+   
Sbjct: 275 SGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQ 332

Query: 135 NTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEI 194
           N L   I + +  NL  LE L LS N        +      L+ L L +N    V     
Sbjct: 333 NFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391

Query: 195 CNLTKLKGLYLGGNRLQ 211
             LT L+ ++L  N   
Sbjct: 392 DRLTSLQKIWLHTNPWD 408

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 81.1 bits (200), Expect = 1e-17
 Identities = 42/184 (22%), Positives = 69/184 (37%), Gaps = 9/184 (4%)

Query: 53  HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKN 111
             + + N +              +S    L+ S N L+           T L+ +  + N
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMN 358

Query: 112 QLSGAFP-SFAFNT-SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSA 169
           QL      +       SLQ LD   N++S +     CS    L  L +S N+    I   
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418

Query: 170 LSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMS 228
           L     ++ L L SN     +PK++  L  L+ L +  N+L+  +P      L  L+ + 
Sbjct: 419 LPP--RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIW 474

Query: 229 LSEN 232
           L  N
Sbjct: 475 LHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 79.9 bits (197), Expect = 4e-17
 Identities = 47/228 (20%), Positives = 85/228 (37%), Gaps = 20/228 (8%)

Query: 50  VHSHRVTVLNISRLNLTGTIPSQLGNLS-----SLQSLNLSCNRLSGSIPSAIFTTYT-L 103
           V    V   +IS + L G +  +  + S     +L    +  +       S I+  ++ +
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNM 302

Query: 104 KYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMF- 162
              +F  +             S   +LDF  N L+ +     C +L  LE L L  N   
Sbjct: 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLK 361

Query: 163 ----HGGIPSALSNCAYLQRLGLSSNDFSGVVPKEIC-NLTKLKGLYLGGNRLQGEIPRE 217
                  + + + +   LQ+L +S N  S    K  C     L  L +  N L   I R 
Sbjct: 362 ELSKIAEMTTQMKS---LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR- 417

Query: 218 SGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSS 265
                 ++++ L  N+++ +IP++   L  L  L ++ N L  +    
Sbjct: 418 -CLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGI 463

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 65.7 bits (160), Expect = 3e-12
 Identities = 40/212 (18%), Positives = 70/212 (33%), Gaps = 34/212 (16%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
            +++ S+  L   +P  L        LN+S N +S  + ++   + +             
Sbjct: 3   FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLS------------- 45

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
                      L+ L    N +   +  ++      LEYL LS N           N   
Sbjct: 46  ----------KLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVKISCHPTVN--- 91

Query: 176 LQRLGLSSNDFSGV-VPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENEL 234
           L+ L LS N F  + + KE  N+++LK L L    L+        +L   +++ +     
Sbjct: 92  LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY 151

Query: 235 QGAIPREWGNLTGLGILQLSDNFLTGITPSSI 266
                 +   L       L   F T      I
Sbjct: 152 G--EKEDPEGLQDFNTESLHIVFPTNKEFHFI 181

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.3 bits (154), Expect = 1e-11
 Identities = 30/226 (13%), Positives = 68/226 (30%), Gaps = 10/226 (4%)

Query: 57  VLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGA 116
           +L++S   +     S +  +      +   + L+    +   +  TL  +    N     
Sbjct: 181 ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240

Query: 117 FPSFAFNTSSLQYLDFGFNTLSG----EIPANICSNLPFLEYLALSQNMFHGGIPSALSN 172
                   +++ Y       L G           ++L  L    +  ++F          
Sbjct: 241 LQLV--WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298

Query: 173 CAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSEN 232
            + +     + +    V       ++    L    N L   +    G+L ELE + L  N
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358

Query: 233 ELQGAIPREWG---NLTGLGILQLSDNFLTGITPSSIYKLLFSIKF 275
           +L+  + +       +  L  L +S N ++            S+  
Sbjct: 359 QLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.4 bits (149), Expect = 7e-11
 Identities = 31/149 (20%), Positives = 53/149 (35%), Gaps = 8/149 (5%)

Query: 124 TSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSS 183
           +     L+   N +S E+  +   +L  L  L +S N       S       L+ L LS 
Sbjct: 20  SQKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78

Query: 184 NDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES--GNLAELELMSLSENELQGAIPRE 241
           N    +          LK L L  N     +P     GN+++L+ + LS   L+ +    
Sbjct: 79  NKLVKI---SCHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134

Query: 242 WGNLTGLGI-LQLSDNFLTGITPSSIYKL 269
             +L    + L L + +     P  +   
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDF 163

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 57.6 bits (139), Expect = 1e-09
 Identities = 33/183 (18%), Positives = 69/183 (37%), Gaps = 7/183 (3%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKNQL 113
            T+LNIS+  ++    S + +LS L+ L +S NR+   +  ++F     L+Y+    N+L
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL 81

Query: 114 SGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNC 173
                       +L++LD  FN            N+  L++L LS           +++ 
Sbjct: 82  V-KISCHPT--VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138

Query: 174 AYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENE 233
              + L +    +      E   L       L       +      +++   + +L  + 
Sbjct: 139 NISKVLLVLGETYGEKEDPE--GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 234 LQG 236
           ++ 
Sbjct: 197 IKC 199

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.9 bits (132), Expect = 8e-09
 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 141 IPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKL 200
           +P ++         L +SQN       S + + + L+ L +S N    +         +L
Sbjct: 15  VPKDLSQKT---TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71

Query: 201 KGLYLGGNRLQGEIPRESGNLAELELMSLSENELQG-AIPREWGNLTGLGILQLSDNFLT 259
           + L L  N+L  +I         L+ + LS N      I +E+GN++ L  L LS   L 
Sbjct: 72  EYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

Query: 260 GITPSSIYKL 269
             +   I  L
Sbjct: 129 KSSVLPIAHL 138

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.5 bits (118), Expect = 5e-07
 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 7/111 (6%)

Query: 166 IPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAEL 224
           +P  LS       L +S N  S +   +I +L+KL+ L +  NR+Q  +         EL
Sbjct: 15  VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQEL 71

Query: 225 ELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKF 275
           E + LS N+L   I         L  L LS N    +     +  +  +KF
Sbjct: 72  EYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.9 bits (197), Expect = 1e-17
 Identities = 51/220 (23%), Positives = 73/220 (33%), Gaps = 18/220 (8%)

Query: 54  RVTVLNISRLNLTGTIPSQLGNLS--SLQSLNLSCNRLSGSIPSA----IFTTYTLKYVS 107
            +  L +  L +TGT P  L   +   L  LNL     +           +    LK +S
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 108 FRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIP---ANICSNLPFLEYLALSQNMFH- 163
             +               +L  LD   N   GE     A      P L+ LAL       
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 164 --GGIPSALSNCAYLQRLGLSSNDFSGVVPKEIC-NLTKLKGLYLGGNRLQGEIPRESGN 220
             G   +  +    LQ L LS N          C   ++L  L L    L+ ++P+    
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL-- 272

Query: 221 LAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTG 260
            A+L ++ LS N L    P     L  +G L L  N    
Sbjct: 273 PAKLSVLDLSYNRLDR-NPSPDE-LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.6 bits (196), Expect = 2e-17
 Identities = 39/185 (21%), Positives = 57/185 (30%), Gaps = 12/185 (6%)

Query: 35  NTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIP 94
            +      W           + VL+I++ +       Q+    +L +L+LS N   G   
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 95  SAIFTTY----TLKYVSFRKNQ---LSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICS 147
                      TL+ ++ R       SG   + A     LQ LD   N+L     A  C 
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

Query: 148 NLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGG 207
               L  L LS            +    L  L LS N            L ++  L L G
Sbjct: 251 WPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLDRNPS--PDELPQVGNLSLKG 305

Query: 208 NRLQG 212
           N    
Sbjct: 306 NPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.7 bits (186), Expect = 4e-16
 Identities = 49/227 (21%), Positives = 76/227 (33%), Gaps = 21/227 (9%)

Query: 52  SHRVTVLNISRLNLTGTIPSQ---LGNLSSLQSLNLSCNRLSGSIPSAIF--TTYTLKYV 106
           S  +  L +    +   I      +  +S LQ L L    ++G+ P  +   T   L  +
Sbjct: 67  SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNIL 126

Query: 107 SFRKNQLSGAFPSFA----FNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMF 162
           + R    +      A    +    L+ L                   P L  L LS N  
Sbjct: 127 NLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPE 185

Query: 163 HGGIPSALSNCAY----LQRLGLSSNDF---SGVVPKEICNLTKLKGLYLGGNRLQGEIP 215
            G      + C      LQ L L +      SGV         +L+GL L  N L+    
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

Query: 216 RES-GNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGI 261
             S    ++L  ++LS   L+  +P+       L +L LS N L   
Sbjct: 246 APSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDRN 289

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.1 bits (156), Expect = 5e-12
 Identities = 44/251 (17%), Positives = 70/251 (27%), Gaps = 22/251 (8%)

Query: 40  VCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFT 99
            CN++    D  S     L  + + L G      G  S    L            + I  
Sbjct: 14  SCNFSDPKPDWSS-AFNCLGAADVELYG------GGRSLEYLLKRVDTEADLGQFTDIIK 66

Query: 100 TYTLKYVSFRKNQLSGAFPS---FAFNTSSLQYLDFGFNTLSGEIPANICSN-LPFLEYL 155
           + +LK ++ R  ++              S LQ L      ++G  P  +     P L  L
Sbjct: 67  SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNIL 126

Query: 156 ALSQNMFHGG--IPSALSNC--AYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ 211
            L    +       + L       L+ L ++         +++     L  L L  N   
Sbjct: 127 NLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186

Query: 212 GEI-------PRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPS 264
           GE        P +   L  L L +       G           L  L LS N L     +
Sbjct: 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246

Query: 265 SIYKLLFSIKF 275
                   +  
Sbjct: 247 PSCDWPSQLNS 257

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 81.1 bits (200), Expect = 1e-17
 Identities = 43/183 (23%), Positives = 76/183 (41%), Gaps = 11/183 (6%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKNQL 113
           + +  +S  +          + SS   LN + N  +        +T   L+ +  ++N L
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGL 389

Query: 114 SGAFPSFAF---NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSAL 170
              F   A    N SSL+ LD   N+L+       C+    +  L LS NM  G +   L
Sbjct: 390 K-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448

Query: 171 SNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMSL 229
                ++ L L +N     +PK++ +L  L+ L +  N+L+  +P      L  L+ + L
Sbjct: 449 P--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWL 504

Query: 230 SEN 232
            +N
Sbjct: 505 HDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 70.3 bits (172), Expect = 6e-14
 Identities = 46/251 (18%), Positives = 80/251 (31%), Gaps = 17/251 (6%)

Query: 27  TNFFAKNWNTSTPVCNWTGVTCDVHS---HRVTVLNISRLNLTGTIPSQLGNLSSLQSLN 83
                 N         W              V  LNI  L +T  I  +    S     +
Sbjct: 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306

Query: 84  LSCNRLSG----SIPSAIFTTYT-LKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLS 138
           L    +          A+++ +  +       +           + SS  +L+F  N  +
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366

Query: 139 GEIPANICSNLPFLEYLALSQNMFH--GGIPSALSNCAYLQRLGLSSNDFSGVVPKEICN 196
            +     CS L  L+ L L +N       +     N + L+ L +S N  +       C 
Sbjct: 367 -DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425

Query: 197 L-TKLKGLYLGGNRLQGEIPRE-SGNLAELELMSLSENELQGAIPREWGNLTGLGILQLS 254
               +  L L  N L G + R     +  L+L     N +  +IP++  +L  L  L ++
Sbjct: 426 WAESILVLNLSSNMLTGSVFRCLPPKVKVLDL---HNNRIM-SIPKDVTHLQALQELNVA 481

Query: 255 DNFLTGITPSS 265
            N L  +    
Sbjct: 482 SNQLKSVPDGV 492

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 52/259 (20%), Positives = 87/259 (33%), Gaps = 19/259 (7%)

Query: 36  TSTPVCNWTGVTCDVHSHR-----------VTVLNISRLNLTGTIPSQLGNLSSLQSLNL 84
           + TP  N      D  +                L++S+ +++      +  LS L+ L L
Sbjct: 24  SMTPFSNELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRL 83

Query: 85  SCNRLSGSIPSAIFTTYT-LKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPA 143
           S NR+  S+   +F     L+Y+    N+L           +SL++LD  FN        
Sbjct: 84  SHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-NISCCPM--ASLRHLDLSFNDFDVLPVC 139

Query: 144 NICSNLPFLEYLALSQNMFHGGIPSALSN-CAYLQRLGLSSNDFSGVVPKEICNL-TKLK 201
               NL  L +L LS   F       +++       L L S    G   + +    T + 
Sbjct: 140 KEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199

Query: 202 GLYLGGNRLQGEIPRESGN-LAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTG 260
            L    N L       S N L  L+L ++  N+        + +    G   L+      
Sbjct: 200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259

Query: 261 ITPSSIYKLLFSIKFGTVI 279
            T       LF   +   +
Sbjct: 260 ETTWKCSVKLFQFFWPRPV 278

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.8 bits (111), Expect = 4e-06
 Identities = 31/166 (18%), Positives = 53/166 (31%), Gaps = 27/166 (16%)

Query: 46  VTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKY 105
           + C       T LN ++   T ++      L  LQ+L L  N L  +       T  +  
Sbjct: 346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSS 404

Query: 106 VSFRKNQL----SGAFPSFAFNTSSLQYLDFGFNTLSG---------------------E 140
           +      L    S A+        S+  L+   N L+G                      
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS 464

Query: 141 IPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDF 186
           IP ++ ++L  L+ L ++ N               LQ + L  N +
Sbjct: 465 IPKDV-THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 5/115 (4%)

Query: 50  VHSHRVTVLNISRLNLTGTIPSQL-GNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSF 108
            +   +  L++S  +L      +      S+  LNLS N L+GS+   +     +K +  
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDL 457

Query: 109 RKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFH 163
             N++  + P    +  +LQ L+   N L   +P  +   L  L+Y+ L  N + 
Sbjct: 458 HNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 25/221 (11%), Positives = 62/221 (28%), Gaps = 13/221 (5%)

Query: 58  LNISRLNLTGTIPSQL--GNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
           L++   ++ G     L   N + L  +    +  S  +  ++     L+  + + N  + 
Sbjct: 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC 235

Query: 116 A----FPSFAFNTSSLQYLDFGFNTLSGEIPANICSNL--PFLEYLALSQNMFHGGIPSA 169
                F S      +L  +       + +    +        +EYL +        I   
Sbjct: 236 QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDRE 295

Query: 170 L-----SNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAEL 224
                 +    L    + +  F            ++    L  +           + +  
Sbjct: 296 EFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF 355

Query: 225 ELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSS 265
             ++ ++N    ++ +    L  L  L L  N L      +
Sbjct: 356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA 396

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.9 bits (195), Expect = 2e-17
 Identities = 49/236 (20%), Positives = 87/236 (36%), Gaps = 24/236 (10%)

Query: 40  VCNWTGVTCDVHSHR-----------VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNR 88
           V     +T                     L++S   L         +   LQ L+LS   
Sbjct: 4   VEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE 63

Query: 89  LSGSIPSAIFTTYT-LKYVSFRKNQLSGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANIC 146
           +  +I    + + + L  +    N +  +    AF   SSLQ L      L+  +     
Sbjct: 64  IQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPI 120

Query: 147 SNLPFLEYLALSQNMFHG-GIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKG--- 202
            +L  L+ L ++ N+     +P   SN   L+ L LSSN    +   ++  L ++     
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 203 -LYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPRE-WGNLTGLGILQLSDN 256
            L L  N +   I   +     L+ ++L  N+L+ ++P   +  LT L  + L  N
Sbjct: 181 SLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 76.5 bits (189), Expect = 2e-16
 Identities = 47/189 (24%), Positives = 72/189 (38%), Gaps = 20/189 (10%)

Query: 92  SIPSAIFTTYTLKYVSFRKNQL----SGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICS 147
            IP  +  +   K +    N L    S +F SF      LQ LD     +   I      
Sbjct: 21  KIPDNLPFS--TKNLDLSFNPLRHLGSYSFFSF----PELQVLDLSRCEIQ-TIEDGAYQ 73

Query: 148 NLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGG 207
           +L  L  L L+ N        A S  + LQ+L     + + +    I +L  LK L +  
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 208 NRLQGEIPRES--GNLAELELMSLSENELQGAIPRE----WGNLTGLGI-LQLSDNFLTG 260
           N +Q          NL  LE + LS N++Q +I          +  L + L LS N +  
Sbjct: 134 NLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 261 ITPSSIYKL 269
           I P +  ++
Sbjct: 192 IQPGAFKEI 200

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 75  NLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFR----KNQLSGAFPSFAFNTSSLQY 129
           NL++L+ L+LS N++  SI          +  ++       N ++      AF    L+ 
Sbjct: 147 NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKE 204

Query: 130 LDFGFNTLSGEIPANICSNLPFLEYLALSQNMFH 163
           L    N L   +P  I   L  L+ + L  N + 
Sbjct: 205 LALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 237

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 76.9 bits (190), Expect = 1e-16
 Identities = 59/190 (31%), Positives = 87/190 (45%), Gaps = 18/190 (9%)

Query: 79  LQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNT-SSLQYLDFGFNTL 137
             S++ S  +L+ +IPS I      K +  + N+LS + PS AF+  + L+ L    N L
Sbjct: 18  KNSVDCSSKKLT-AIPSNIPAD--TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKL 73

Query: 138 SGEIPANICSNLPFLEYLALSQNMFH---GGIPSALSNCAYLQRLGLSSNDFSGVVPKEI 194
              +PA I   L  LE L ++ N       G+   L N   L  L L  N    + P+  
Sbjct: 74  Q-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN---LAELRLDRNQLKSLPPRVF 129

Query: 195 CNLTKLKGLYLGGNRLQGEIPRESG---NLAELELMSLSENELQGAIPREWGNLTGLGIL 251
            +LTKL  L LG N LQ  +P   G    L  L+ + L  N+L+      +  LT L  L
Sbjct: 130 DSLTKLTYLSLGYNELQ-SLP--KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186

Query: 252 QLSDNFLTGI 261
           +L +N L  +
Sbjct: 187 KLDNNQLKRV 196

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 76.9 bits (190), Expect = 1e-16
 Identities = 59/222 (26%), Positives = 93/222 (41%), Gaps = 26/222 (11%)

Query: 41  CNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTT 100
           CN    + D  S ++T            IPS     +  + L+L  N+LS S+PS  F  
Sbjct: 14  CNNNKNSVDCSSKKLT-----------AIPS--NIPADTKKLDLQSNKLS-SLPSKAFHR 59

Query: 101 YT-LKYVSFRKNQLSGAFPSFAFN-TSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS 158
            T L+ +    N+L    P+  F    +L+ L    N L   +P  +   L  L  L L 
Sbjct: 60  LTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLD 117

Query: 159 QNMFH---GGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIP 215
           +N        +  +L+    L  L L  N+   +       LT LK L L  N+L+  +P
Sbjct: 118 RNQLKSLPPRVFDSLTK---LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVP 173

Query: 216 RES-GNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDN 256
             +   L EL+ + L  N+L+      + +L  L +LQL +N
Sbjct: 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 10/101 (9%)

Query: 165 GIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAE 223
            IP+        ++L L SN  S +  K    LTKL+ LYL  N+LQ  +P      L  
Sbjct: 34  NIPADT------KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86

Query: 224 LELMSLSENELQGAIPRE-WGNLTGLGILQLSDNFLTGITP 263
           LE + +++N+LQ A+P   +  L  L  L+L  N L  + P
Sbjct: 87  LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPP 126

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 75.6 bits (186), Expect = 5e-16
 Identities = 47/238 (19%), Positives = 82/238 (34%), Gaps = 24/238 (10%)

Query: 39  PVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIF 98
            +C+ +         +VT            IPS L    +   L     +L   I    F
Sbjct: 5   RICHCSNRVFLCQESKVT-----------EIPSDL--PRNAIELRFVLTKLR-VIQKGAF 50

Query: 99  TTYT-LKYVSFRKNQLSGAFPSFAF-NTSSLQYLDF-GFNTLSGEIPANICSNLPFLEYL 155
           + +  L+ +   +N +     +  F N   L  +     N L   I      NLP L+YL
Sbjct: 51  SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYL 109

Query: 156 ALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKE-ICNLT-KLKGLYLGGNRLQGE 213
            +S             +      L +  N     + +     L+ +   L+L  N +Q E
Sbjct: 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-E 168

Query: 214 IPRESGNLAEL-ELMSLSENELQGAIPRE-WGNLTGLGILQLSDNFLTGITPSSIYKL 269
           I   + N  +L EL     N L+  +P + +   +G  IL +S   +  +    +  L
Sbjct: 169 IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENL 225

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 37/207 (17%), Positives = 64/207 (30%), Gaps = 35/207 (16%)

Query: 53  HRVTVLNISRLNLTGTIPSQ-LGNLSSLQSLNLS-CNRLSGSIPSAIFTTYT-LKYVSFR 109
             +  + IS+ ++   I +    NL  L  + +   N L   I    F     L+Y+   
Sbjct: 54  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLIS 112

Query: 110 KNQLSGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPF-LEYLALSQN------- 160
              +    P     ++     LD   N     I  N    L F    L L++N       
Sbjct: 113 NTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN 171

Query: 161 -MFHG---------------GIPS-ALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGL 203
             F+G                +P+      +    L +S      +    + NL KL+  
Sbjct: 172 SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 231

Query: 204 YLGGNRLQGEIPRESGNLAELELMSLS 230
                +   ++P     L  L   SL+
Sbjct: 232 STYNLK---KLPTLE-KLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 4/107 (3%)

Query: 166 IPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAEL 224
           IPS L        L         +          L+ + +  N +   I  +   NL +L
Sbjct: 24  IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81

Query: 225 ELMSLSE-NELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL 270
             + + + N L    P  + NL  L  L +S+  +  +        L
Sbjct: 82  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 72.2 bits (177), Expect = 1e-14
 Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 7/150 (4%)

Query: 125 SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSN 184
           S    LD   N LS        + L  L  L LS N  +     A      L+ L LSSN
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 185 DFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMSLSENELQGAIPRE-- 241
               +      +L  L+ L L  N +   + R +  ++A+L+ + LS+N++    P E  
Sbjct: 99  HLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELI 156

Query: 242 --WGNLTGLGILQLSDNFLTGITPSSIYKL 269
                L  L +L LS N L  +  + + KL
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.9 bits (166), Expect = 3e-13
 Identities = 51/175 (29%), Positives = 68/175 (38%), Gaps = 10/175 (5%)

Query: 61  SRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKNQLSGAFPS 119
           S+  L   +P  L   S    L+LS N LS        T  T L  +    N L+    S
Sbjct: 26  SKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISS 81

Query: 120 FAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQR 178
            AF    +L+YLD   N L   +   + S+L  LE L L  N       +A  + A LQ+
Sbjct: 82  EAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140

Query: 179 LGLSSNDFSGVVP---KEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLS 230
           L LS N  S       K+   L KL  L L  N+L+     +   L       L 
Sbjct: 141 LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 10/133 (7%)

Query: 56  TVLNISRLNLTGTIPSQ-LGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKNQL 113
             L +S  +L   I S+    + +L+ L+LS N L  ++   +F+    L+ +    N +
Sbjct: 67  HSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHI 124

Query: 114 SGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANI---CSNLPFLEYLALSQNMFHGGIPSA 169
                  AF + + LQ L    N +S   P  +    + LP L  L LS N       + 
Sbjct: 125 V-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182

Query: 170 LSNCAYLQRLGLS 182
           L       + GL 
Sbjct: 183 LQKLPAWVKNGLY 195

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.3 bits (175), Expect = 2e-14
 Identities = 40/209 (19%), Positives = 87/209 (41%), Gaps = 17/209 (8%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS 114
              +   + N+T T+     +L  + +L+     ++ +I   +     L  +  + NQ++
Sbjct: 21  AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKDNQIT 76

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCA 174
                   N + +  L+   N L   + A   + L  ++ L L+         + L+  +
Sbjct: 77  D-LAPLK-NLTKITELELSGNPLK-NVSAI--AGLQSIKTLDLTSTQITD--VTPLAGLS 129

Query: 175 YLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENEL 234
            LQ L L  N  + + P  +  LT L+ L +G  ++    P    NL++L  +   +N++
Sbjct: 130 NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLA--NLSKLTTLKADDNKI 185

Query: 235 QGAIPREWGNLTGLGILQLSDNFLTGITP 263
               P    +L  L  + L +N ++ ++P
Sbjct: 186 SDISP--LASLPNLIEVHLKNNQISDVSP 212

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.8 bits (166), Expect = 3e-13
 Identities = 38/191 (19%), Positives = 79/191 (41%), Gaps = 15/191 (7%)

Query: 73  LGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF 132
              L++   +    + ++ ++  A      +  +S     ++          ++L  L+ 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQADLD--GITTLSAFGTGVTTI--EGVQYLNNLIGLEL 70

Query: 133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPK 192
             N ++ ++      NL  +  L LS N       SA++    ++ L L+S   + V P 
Sbjct: 71  KDNQIT-DLAP--LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTP- 124

Query: 193 EICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQ 252
            +  L+ L+ LYL  N++   I      L  L+ +S+   ++    P    NL+ L  L+
Sbjct: 125 -LAGLSNLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQVSDLTPLA--NLSKLTTLK 179

Query: 253 LSDNFLTGITP 263
             DN ++ I+P
Sbjct: 180 ADDNKISDISP 190

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 66.3 bits (162), Expect = 9e-13
 Identities = 49/217 (22%), Positives = 86/217 (39%), Gaps = 17/217 (7%)

Query: 54  RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQL 113
            +T L+     +T TI   +  L++L  L L  N+++   P    T   +  +    N L
Sbjct: 42  GITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQITDLAPLKNLT--KITELELSGNPL 97

Query: 114 SGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNC 173
                + A    S++ LD     ++   P    + L  L+ L L  N       S L+  
Sbjct: 98  KN-VSAIAGLQ-SIKTLDLTSTQITDVTP---LAGLSNLQVLYLDLNQITN--ISPLAGL 150

Query: 174 AYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENE 233
             LQ L + +   S + P  + NL+KL  L    N++  +I     +L  L  + L  N+
Sbjct: 151 TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQ 206

Query: 234 LQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL 270
           +    P    N + L I+ L++  +T         L+
Sbjct: 207 ISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLV 241

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.9 bits (148), Expect = 5e-11
 Identities = 42/197 (21%), Positives = 76/197 (38%), Gaps = 15/197 (7%)

Query: 71  SQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYL 130
           + L NL+ +  L LS N L      A     ++K +     Q++      A   S+LQ L
Sbjct: 79  APLKNLTKITELELSGNPLKNVSAIAGLQ--SIKTLDLTSTQITD-VTPLA-GLSNLQVL 134

Query: 131 DFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVV 190
               N ++  I     + L  L+YL++          + L+N + L  L    N  S + 
Sbjct: 135 YLDLNQIT-NISPL--AGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKISDIS 189

Query: 191 PKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGI 250
           P  + +L  L  ++L  N++    P    N + L +++L+   +         NL     
Sbjct: 190 P--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVP-- 243

Query: 251 LQLSDNFLTGITPSSIY 267
             +       I P++I 
Sbjct: 244 NVVKGPSGAPIAPATIS 260

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.4 bits (139), Expect = 9e-10
 Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 14/179 (7%)

Query: 59  NISRLNLTG---TIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
            I+ L L+G      S +  L S+++L+L+  +++   P A  +   L+ +    NQ++ 
Sbjct: 86  KITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN--LQVLYLDLNQITN 143

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
                A   ++LQYL  G   +S   P    +NL  L  L    N       S L++   
Sbjct: 144 -ISPLA-GLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISD--ISPLASLPN 196

Query: 176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENEL 234
           L  + L +N  S V    + N + L  + L    +  +    + NL    ++       
Sbjct: 197 LIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 6/96 (6%)

Query: 168 SALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELM 227
                 A   ++    ++ +  V     +L  +  L   G  +   I      L  L  +
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGL 68

Query: 228 SLSENELQGAIPREWGNLTGLGILQLSDNFLTGITP 263
            L +N++    P +  NLT +  L+LS N L  ++ 
Sbjct: 69  ELKDNQITDLAPLK--NLTKITELELSGNPLKNVSA 102

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.9 bits (164), Expect = 1e-13
 Identities = 27/159 (16%), Positives = 56/159 (35%), Gaps = 8/159 (5%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS 114
           +T + ++ +N+T      +    +++ L ++    +    + I     L+ +      ++
Sbjct: 46  LTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVT 101

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCA 174
                     +SL  LD   +     I   I + LP +  + LS N     I   L    
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITDI-MPLKTLP 159

Query: 175 YLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGE 213
            L+ L +  +         I +  KL  LY     + G+
Sbjct: 160 ELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 32/199 (16%), Positives = 60/199 (30%), Gaps = 32/199 (16%)

Query: 63  LNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAF 122
           L  + T       ++SL  + L+   ++            L  + +  N           
Sbjct: 30  LGQSSTANITEAQMNSLTYITLANINVT-----------DLTGIEYAHN----------- 67

Query: 123 NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLS 182
               ++ L       +   P    S L  LE L +            LS    L  L +S
Sbjct: 68  ----IKDLTINNIHATNYNP---ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 183 SNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREW 242
            +     +  +I  L K+  + L  N    +I      L EL+ +++  + +      E 
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIE- 178

Query: 243 GNLTGLGILQLSDNFLTGI 261
            +   L  L      + G 
Sbjct: 179 -DFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.6 bits (145), Expect = 6e-11
 Identities = 22/141 (15%), Positives = 48/141 (34%), Gaps = 10/141 (7%)

Query: 125 SSLQYLDFGFNTLSGEIPANIC--SNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLS 182
           +SL Y+      ++     ++        ++ L ++         + +S  + L+RL + 
Sbjct: 44  NSLTYITLANINVT-----DLTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIM 96

Query: 183 SNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREW 242
             D +      +  LT L  L +  +     I  +   L ++  + LS N     I    
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PL 155

Query: 243 GNLTGLGILQLSDNFLTGITP 263
             L  L  L +  + +     
Sbjct: 156 KTLPELKSLNIQFDGVHDYRG 176

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 5e-06
 Identities = 19/123 (15%), Positives = 41/123 (33%), Gaps = 7/123 (5%)

Query: 147 SNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLG 206
           S         L Q+       + +++   L  + L++ + + +    I     +K L + 
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNS---LTYITLANINVTDL--TGIEYAHNIKDLTIN 74

Query: 207 GNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSI 266
                   P     L+ LE + +   ++          LT L +L +S +       + I
Sbjct: 75  NIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 267 YKL 269
             L
Sbjct: 133 NTL 135

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 15/222 (6%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKNQLS 114
               ++  ++   IPS      S Q+L L    L  +IPS  F+    +  +    +   
Sbjct: 14  EDFRVTCKDIQ-RIPS---LPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTL 68

Query: 115 GAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIP--SALS 171
               S +F N S + +++         I  +    LP L++L +         P  + + 
Sbjct: 69  QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVY 127

Query: 172 NCAYLQRLGLSSNDFSGVVPKEI-CNLTK-LKGLYLGGNRLQGEIPRESGNLAELELMSL 229
           +      L ++ N +   +P      L      L L  N     +   + N  +L+ + L
Sbjct: 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYL 186

Query: 230 SENELQGAIPRE--WGNLTGLGILQLSDNFLTGITPSSIYKL 269
           ++N+    I ++   G  +G  +L +S   +T +    +  L
Sbjct: 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHL 228

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 44/211 (20%), Positives = 76/211 (36%), Gaps = 14/211 (6%)

Query: 55  VTVLNISRLNLTGTIPSQ-LGNLSSLQSLNLSCNRLSGSIPSAIFT-TYTLKYVSFRKNQ 112
              L +   +L  TIPS    NL ++  + +S +     + S  F     + ++  R  +
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 113 LSGAFPSFAF-NTSSLQYLDFGFNTLSGEIPA-NICSNLPFLEYLALSQNMFHGGIPS-A 169
                   A      L++L      L    P      +      L ++ N +   IP  A
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 170 LSN-CAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRE--SGNLAELEL 226
               C     L L +N F+  V     N TKL  +YL  N+    I ++   G  +   L
Sbjct: 151 FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 227 MSLSENELQGAIPREWGNLTGLGILQLSDNF 257
           + +S+  +  A+P     L  L  L   + +
Sbjct: 210 LDVSQTSVT-ALPS--KGLEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 5/107 (4%)

Query: 166 IPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAEL 224
           IPS   +    Q L L       +      NL  +  +Y+  +    ++   S  NL+++
Sbjct: 26  IPSLPPS---TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV 82

Query: 225 ELMSLSENELQGAIPREW-GNLTGLGILQLSDNFLTGITPSSIYKLL 270
             + +        I  +    L  L  L + +  L      +     
Sbjct: 83  THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST 129

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 68.2 bits (166), Expect = 4e-13
 Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 15/220 (6%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS 114
           +  +  +  ++  ++   +  L ++  L L+ N+L+  I   +     L ++   +N++ 
Sbjct: 45  IDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT-DI-KPLTNLKNLGWLFLDENKIK 100

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCA 174
               S   +   L+ L    N +S +I      +LP LE L L  N       + LS   
Sbjct: 101 -DLSSLK-DLKKLKSLSLEHNGIS-DING--LVHLPQLESLYLGNNKIT--DITVLSRLT 153

Query: 175 YLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENEL 234
            L  L L  N  S +VP  +  LTKL+ LYL  N +     R    L  L+++ L   E 
Sbjct: 154 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQEC 209

Query: 235 QGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK 274
                    NL     ++ +D  L      S         
Sbjct: 210 LNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 249

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.4 bits (164), Expect = 8e-13
 Identities = 44/218 (20%), Positives = 90/218 (41%), Gaps = 21/218 (9%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS 114
               N+ + ++T  +      L+S+  +  + + +  S+   I     +  +    N+L+
Sbjct: 23  TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT 78

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIP--SALSN 172
              P    N  +L +L    N +  ++ +    +L  L+ L+L  N    GI   + L +
Sbjct: 79  DIKP--LTNLKNLGWLFLDENKIK-DLSS--LKDLKKLKSLSLEHN----GISDINGLVH 129

Query: 173 CAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSEN 232
              L+ L L +N  + +    +  LTKL  L L  N++  +I   +  L +L+ + LS+N
Sbjct: 130 LPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVPLA-GLTKLQNLYLSKN 185

Query: 233 ELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL 270
            +  +  R    L  L +L+L          +    L+
Sbjct: 186 HI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLV 221

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.3 bits (117), Expect = 7e-07
 Identities = 38/206 (18%), Positives = 68/206 (33%), Gaps = 13/206 (6%)

Query: 71  SQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYL 130
           S L +L  L+SL+L  N +S  I + +     L+ +    N+++      +  T  L  L
Sbjct: 103 SSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITD-ITVLSRLTK-LDTL 158

Query: 131 DFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIP--SALSNCAYLQRLGLSSNDFSG 188
               N +S +I     + L  L+ L LS+N     I    AL+    L  L L S +   
Sbjct: 159 SLEDNQIS-DIVP--LAGLTKLQNLYLSKN----HISDLRALAGLKNLDVLELFSQECLN 211

Query: 189 VVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGL 248
                  NL     +      L            E   +     E    +   +     +
Sbjct: 212 KPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTI 271

Query: 249 GILQLSDNFLTGITPSSIYKLLFSIK 274
           G  +   +         +Y + + + 
Sbjct: 272 GKAKARFHGRVTQPLKEVYTVSYDVD 297

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 6/96 (6%)

Query: 168 SALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELM 227
                 A   +  L     +  V      L  +  +    + ++  +      L  +  +
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKL 70

Query: 228 SLSENELQGAIPREWGNLTGLGILQLSDNFLTGITP 263
            L+ N+L    P    NL  LG L L +N +  ++ 
Sbjct: 71  FLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSS 104

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 49/214 (22%), Positives = 81/214 (37%), Gaps = 24/214 (11%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
           T L  +  N+T T+   L   ++L  L    N+L+ ++     T   L Y++   N+L+ 
Sbjct: 67  TKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLT-NLDVTPLT--KLTYLNCDTNKLTK 120

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
              S       L YL+   NTL+ EI     S+   L  L    N         ++    
Sbjct: 121 LDVS---QNPLLTYLNCARNTLT-EIDV---SHNTQLTELDCHLN--KKITKLDVTPQTQ 171

Query: 176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ 235
           L  L  S N  + +   ++     L  L    N +  ++        +L  +  S N+L 
Sbjct: 172 LTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT 225

Query: 236 GAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
                +   LT L     S N LT +  S++ KL
Sbjct: 226 EI---DVTPLTQLTYFDCSVNPLTELDVSTLSKL 256

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 35/212 (16%), Positives = 69/212 (32%), Gaps = 20/212 (9%)

Query: 58  LNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAF 117
              +   +  T       L++L SL+   + ++        T   L  +    N ++   
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLT--GLTKLICTSNNITTLD 80

Query: 118 PSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQ 177
            S     ++L YL    N L+  +     + L  L YL    N       S       L 
Sbjct: 81  LS---QNTNLTYLACDSNKLT-NLDV---TPLTKLTYLNCDTNKLTKLDVSQNPL---LT 130

Query: 178 RLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGA 237
            L  + N  + +   ++ + T+L  L    N+   ++        +L  +  S N++   
Sbjct: 131 YLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITEL 185

Query: 238 IPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
                     L  L    N +T +  +   +L
Sbjct: 186 DV---SQNKLLNRLNCDTNNITKLDLNQNIQL 214

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 38/218 (17%), Positives = 69/218 (31%), Gaps = 23/218 (10%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
             LN    N+T  +   L     L  L+ S N+L+  I     T   L Y     N L+ 
Sbjct: 194 NRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EIDVTPLT--QLTYFDCSVNPLT- 246

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
                    S L  L      L  EI     + L + +     +          +++   
Sbjct: 247 ELDVSTL--SKLTTLHCIQTDLL-EIDLTHNTQLIYFQAEGCRKI-----KELDVTHNTQ 298

Query: 176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ 235
           L  L   +   + +   ++    KL  LYL    L  E+     +  +L+ +S     +Q
Sbjct: 299 LYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ 352

Query: 236 GAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSI 273
                  G +  L     ++     +   ++     +I
Sbjct: 353 -DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTI 388

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 37/202 (18%), Positives = 69/202 (34%), Gaps = 21/202 (10%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
           T L+ S   LT  I   +  L+ L   + S N L+  +  +  +   L  +   +  L  
Sbjct: 215 TFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELDVSTLS--KLTTLHCIQTDLLE 268

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
              +   + + L Y          E+     ++   L  L          +   LS    
Sbjct: 269 IDLT---HNTQLIYFQAEGCRKIKELDV---THNTQLYLLDCQAAGIT-ELD--LSQNPK 319

Query: 176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ 235
           L  L L++ + + +   ++ + TKLK L      +Q +     G +  L     +E +  
Sbjct: 320 LVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI 374

Query: 236 GAIPREWGNLTGLGILQLSDNF 257
             +P+E      L I    D  
Sbjct: 375 -TMPKETLTNNSLTIAVSPDLL 395

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 46/230 (20%), Positives = 70/230 (30%), Gaps = 34/230 (14%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG 115
           T LN     LT  +   +     L  LN + N L+  I  +  T   L  +    N+   
Sbjct: 109 TYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTLT-EIDVSHNT--QLTELDCHLNKKIT 162

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175
                   T  L  LD  FN ++ E+     S    L  L    N     +   L+    
Sbjct: 163 -KLDVTPQT-QLTTLDCSFNKIT-ELDV---SQNKLLNRLNCDTNNIT-KLD--LNQNIQ 213

Query: 176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELE---------- 225
           L  L  SSN  + +   ++  LT+L       N L          L  L           
Sbjct: 214 LTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEID 270

Query: 226 ------LMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
                 L+       +     +  + T L +L      +T +  S   KL
Sbjct: 271 LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKL 320

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 21/118 (17%), Positives = 34/118 (28%), Gaps = 8/118 (6%)

Query: 152 LEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ 211
                 +          +    A L  L   ++  + +    I  LT L  L    N + 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT 77

Query: 212 GEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
             +         L  ++   N+L   +      LT L  L    N LT +  S    L
Sbjct: 78  -TLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLL 129

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 3/133 (2%)

Query: 125 SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSN 184
            ++  +    NT+   IP    S    L  + LS N      P A      L  L L  N
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90

Query: 185 DFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMSLSENELQGAIPREWG 243
             + +       L  L+ L L  N++   +  ++  +L  L L+SL +N+LQ      + 
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 244 NLTGLGILQLSDN 256
            L  +  + L+ N
Sbjct: 150 PLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 39/170 (22%), Positives = 63/170 (37%), Gaps = 20/170 (11%)

Query: 41  CNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTT 100
           C+   V C                LT  IP+ L    ++  + L  N +   IP   F+ 
Sbjct: 11  CSNNIVDC------------RGKGLT-EIPTNL--PETITEIRLEQNTIK-VIPPGAFSP 54

Query: 101 YT-LKYVSFRKNQLSGAFPSFAFNT-SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS 158
           Y  L+ +    NQ+S      AF    SL  L    N ++ E+P ++   L  L+ L L+
Sbjct: 55  YKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLN 112

Query: 159 QNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGN 208
            N  +     A  +   L  L L  N    +       L  ++ ++L  N
Sbjct: 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 8/137 (5%)

Query: 140 EIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTK 199
           EIP N+   +     + L QN      P A S    L+R+ LS+N  S + P     L  
Sbjct: 25  EIPTNLPETI---TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81

Query: 200 LKGLYLGGNRLQGEIPRES-GNLAELELMSLSENELQGAIPRE-WGNLTGLGILQLSDNF 257
           L  L L GN++  E+P+     L  L+L+ L+ N++   +  + + +L  L +L L DN 
Sbjct: 82  LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNK 139

Query: 258 LTGITPSSIYKLLFSIK 274
           L  I     +  L +I+
Sbjct: 140 LQTI-AKGTFSPLRAIQ 155

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 44/214 (20%), Positives = 74/214 (34%), Gaps = 35/214 (16%)

Query: 68  TIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSF------- 120
             P      +     NL    ++ ++      +      +    +               
Sbjct: 12  IFPDDA--FAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLA 69

Query: 121 ----------AFNT-SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFH---GGI 166
                     A    ++L YL    N L   +P  +   L  L+ L L +N       G+
Sbjct: 70  LGGNKLHDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGV 128

Query: 167 PSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESG---NLAE 223
              L+N   L  L L+ N    +       LT L  L L  N+LQ  +P   G    L +
Sbjct: 129 FDKLTN---LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLP--EGVFDKLTQ 182

Query: 224 LELMSLSENELQGAIPRE-WGNLTGLGILQLSDN 256
           L+ + L +N+L+ ++P   +  LT L  + L DN
Sbjct: 183 LKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 54.3 bits (131), Expect = 9e-09
 Identities = 40/188 (21%), Positives = 65/188 (34%), Gaps = 22/188 (11%)

Query: 80  QSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSG 139
           +++ +S        P   F        + +K  ++    +     +S+  +    + +  
Sbjct: 1   ETITVSTPIKQ-IFPDDAFAETI--KANLKKKSVT-DAVTQN-ELNSIDQIIANNSDIKS 55

Query: 140 EIPANICSNLPFLEYLALSQN------MFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKE 193
                   N+    YLAL  N               L+N   L  L L+ N    +    
Sbjct: 56  VQGIQYLPNV---RYLALGGNKLHDISALKE-----LTN---LTYLILTGNQLQSLPNGV 104

Query: 194 ICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQL 253
              LT LK L L  N+LQ         L  L  ++L+ N+LQ      +  LT L  L L
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164

Query: 254 SDNFLTGI 261
           S N L  +
Sbjct: 165 SYNQLQSL 172

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 47/172 (27%), Positives = 72/172 (41%), Gaps = 17/172 (9%)

Query: 92  SIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPF 151
           S+PS I        +      L+    +     + L +L+  +N L   + A +  +L  
Sbjct: 28  SVPSGIPADTEKLDLQS--TGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTE 84

Query: 152 LEYLALSQNMFH---GGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGN 208
           L  L L+ N       G+   L+    L +L L  N    +       LTKLK L L  N
Sbjct: 85  LGTLGLANNQLASLPLGVFDHLTQ---LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141

Query: 209 RLQGEIPRESG---NLAELELMSLSENELQGAIPRE-WGNLTGLGILQLSDN 256
           +LQ  IP  +G    L  L+ +SLS N+LQ ++P   +  L  L  + L  N
Sbjct: 142 QLQ-SIP--AGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 47/184 (25%), Positives = 71/184 (38%), Gaps = 22/184 (11%)

Query: 41  CNWTGVTCDVHSHRVT-----------VLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRL 89
           CN      D     +             L++    L     +    L+ L  LNL  N+L
Sbjct: 12  CNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL 71

Query: 90  SGSIPSAIFTTYT-LKYVSFRKNQLSGAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICS 147
             ++ + +F   T L  +    NQL+ + P   F + + L  L  G N L   +P+ +  
Sbjct: 72  Q-TLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFD 128

Query: 148 NLPFLEYLALSQNMFH---GGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLY 204
            L  L+ L L+ N       G    L+N   LQ L LS+N    V       L KL+ + 
Sbjct: 129 RLTKLKELRLNTNQLQSIPAGAFDKLTN---LQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185

Query: 205 LGGN 208
           L GN
Sbjct: 186 LFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 3/121 (2%)

Query: 141 IPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKL 200
           +P+ I ++    E L L          +       L  L L  N    +      +LT+L
Sbjct: 29  VPSGIPADT---EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85

Query: 201 KGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTG 260
             L L  N+L         +L +L+ + L  N+L+      +  LT L  L+L+ N L  
Sbjct: 86  GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145

Query: 261 I 261
           I
Sbjct: 146 I 146

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 59.7 bits (145), Expect = 6e-11
 Identities = 32/134 (23%), Positives = 49/134 (36%), Gaps = 4/134 (2%)

Query: 125 SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSN 184
                L    N  +      I   LP L  +  S N        A    + +  + L+SN
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 185 DFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMSLSENELQGAIPRE-W 242
               V  K    L  LK L L  NR+   +  +S   L+ + L+SL +N++   +    +
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAF 149

Query: 243 GNLTGLGILQLSDN 256
             L  L  L L  N
Sbjct: 150 DTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 8/127 (6%)

Query: 140 EIPANICSNLPFLEYLALSQNMFHGGIPSAL-SNCAYLQRLGLSSNDFSGVVPKEICNLT 198
           +IP +I         L L+ N F     + +      L+++  S+N  + +        +
Sbjct: 25  KIPEHIPQYT---AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS 81

Query: 199 KLKGLYLGGNRLQGEIPRES-GNLAELELMSLSENELQGAIPRE-WGNLTGLGILQLSDN 256
            +  + L  NRL+  +  +    L  L+ + L  N +   +  + +  L+ + +L L DN
Sbjct: 82  GVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDN 139

Query: 257 FLTGITP 263
            +T + P
Sbjct: 140 QITTVAP 146

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 165 GIPSALSNCAYLQRLGLSSNDFSGVVPKEI-CNLTKLKGLYLGGNRLQGEIPRES-GNLA 222
            IP       Y   L L++N+F+ +    I   L +L+ +    N++  +I   +    +
Sbjct: 29  HIP------QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGAS 81

Query: 223 ELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
            +  + L+ N L+    + +  L  L  L L  N +T +   S   L
Sbjct: 82  GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL 128

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 48/211 (22%), Positives = 85/211 (40%), Gaps = 15/211 (7%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS 114
           +  +  +  ++  ++   +  L ++  L L+ N+L+  I   +     L ++   +N++ 
Sbjct: 48  IDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT-DI-KPLANLKNLGWLFLDENKVK 103

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCA 174
               S   +   L+ L    N +S +I      +LP LE L L  N       + LS   
Sbjct: 104 -DLSSLK-DLKKLKSLSLEHNGIS-DING--LVHLPQLESLYLGNNKIT--DITVLSRLT 156

Query: 175 YLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENEL 234
            L  L L  N  S +VP  +  LTKL+ LYL  N +  ++ R    L  L+++ L   E 
Sbjct: 157 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQEC 212

Query: 235 QGAIPREWGNLTGLGILQLSDNFLTGITPSS 265
                    NL     ++ +D  L      S
Sbjct: 213 LNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 243

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 43/220 (19%), Positives = 86/220 (39%), Gaps = 25/220 (11%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS 114
               N+ + ++T  +      L+S+  +  + + +  S+   I     +  +    N+L+
Sbjct: 26  TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT 81

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANIC--SNLPFLEYLALSQNMFHGGI--PSAL 170
              P    N  +L +L    N +      ++    +L  L+ L+L  N    GI   + L
Sbjct: 82  DIKP--LANLKNLGWLFLDENKVK-----DLSSLKDLKKLKSLSLEHN----GISDINGL 130

Query: 171 SNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLS 230
            +   L+ L L +N  + +    +  LTKL  L L  N++   +P     L +L+ + LS
Sbjct: 131 VHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLS 186

Query: 231 ENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL 270
           +N +          L  L +L+L          +    L+
Sbjct: 187 KNHISDLRALA--GLKNLDVLELFSQECLNKPINHQSNLV 224

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.7 bits (136), Expect = 3e-09
 Identities = 35/193 (18%), Positives = 60/193 (31%), Gaps = 10/193 (5%)

Query: 70  PSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQY 129
                    L    LS  + +  + S + +   L+ +                    L Y
Sbjct: 342 CRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY 400

Query: 130 LDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGV 189
                   S     +         YL   ++ F           A ++ L L+  D + +
Sbjct: 401 EKETLQYFSTLKAVDPMR----AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL 456

Query: 190 VPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLG 249
               +  L  +  L L  NRL+  +P     L  LE++  S+N L+  +     NL  L 
Sbjct: 457 --CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQ 511

Query: 250 ILQLSDNFLTGIT 262
            L L +N L    
Sbjct: 512 ELLLCNNRLQQSA 524

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.3 bits (122), Expect = 1e-07
 Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 7/136 (5%)

Query: 25  DPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNL 84
           DP      +   S  +   + +  +    RV  L+++  +LT  +   L  L  +  L+L
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRV--LHLAHKDLT-VLCH-LEQLLLVTHLDL 470

Query: 85  SCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPAN 144
           S NRL  ++P A+     L+ +    N L       A     LQ L    N L       
Sbjct: 471 SHNRLR-ALPPALAALRCLEVLQASDNALE-NVDGVANLP-RLQELLLCNNRLQQSAAIQ 527

Query: 145 ICSNLPFLEYLALSQN 160
              + P L  L L  N
Sbjct: 528 PLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 8/106 (7%)

Query: 54  RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQL 113
            VT L++S   L   +P  L  L  L+ L  S N L  ++   +     L+ +    N+L
Sbjct: 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRL 520

Query: 114 SGAFPSFA--FNTSSLQYLDFGFNTLSGEIP--ANICSNLPFLEYL 155
                +     +   L  L+   N+L  E      +   LP +  +
Sbjct: 521 QQ-SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 39/244 (15%), Positives = 82/244 (33%), Gaps = 41/244 (16%)

Query: 54  RVTVLNISRLNLTGT----IPSQLGNLSSLQSLNLSCNRLSGSIPSAI-----FTTYTLK 104
           R+  L +   +L+      + S L      + L +S N ++ +    +      +   L+
Sbjct: 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202

Query: 105 YVSFRKNQLS----GAFPSFAFNTSSLQYLDFGFNTLSGE----IPANICSNLPFLEYLA 156
            +      ++            + +SL+ L  G N L       +   +      L  L 
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 157 LSQNMFH----GGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNL-----TKLKGLYLGG 207
           + +        G +   L     L+ L L+ N+      + +C        +L+ L++  
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322

Query: 208 NRLQ-------GEIPRESGNLAELELMSLSENELQGAIPREWG-----NLTGLGILQLSD 255
                        +  ++  L EL    +S N L+ A  RE         + L +L L+D
Sbjct: 323 CSFTAACCSHFSSVLAQNRFLLEL---QISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379

Query: 256 NFLT 259
             ++
Sbjct: 380 CDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 37/183 (20%), Positives = 61/183 (33%), Gaps = 26/183 (14%)

Query: 54  RVTVLNISRLNLTGT----IPSQLGNLSSLQSLNLSCNRLSGSIPSAIF-----TTYTLK 104
           +  V+ +    LT      I S L    +L  LNL  N L       +       +  ++
Sbjct: 29  QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQ 88

Query: 105 YVSFRKNQLS----GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNL----PFLEYLA 156
            +S +   L+    G   S      +LQ L    N L       +C  L      LE L 
Sbjct: 89  KLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 148

Query: 157 LSQNMFH----GGIPSALSNCAYLQRLGLSSNDFSGVVPKEIC-----NLTKLKGLYLGG 207
           L            + S L      + L +S+ND +    + +C     +  +L+ L L  
Sbjct: 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208

Query: 208 NRL 210
             +
Sbjct: 209 CGV 211

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 30/152 (19%), Positives = 47/152 (30%), Gaps = 18/152 (11%)

Query: 77  SSLQSLNLSCNRLS-GSIPSAIFTTYTLKYVSFRKNQLS----GAFPSFAFNTSSLQYLD 131
             +QSL++ C  LS       +      + V      L+        S      +L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 132 FGFNTLSGEIPANICSNLPF----LEYLALSQNMFH----GGIPSALSNCAYLQRLGLSS 183
              N L       +   L      ++ L+L          G + S L     LQ L LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 184 NDFSGVVPKEIC-----NLTKLKGLYLGGNRL 210
           N       + +C        +L+ L L    L
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.3 bits (108), Expect = 9e-06
 Identities = 32/183 (17%), Positives = 54/183 (29%), Gaps = 26/183 (14%)

Query: 54  RVTVLNISRLNLT----GTIPSQLGNLSSLQSLNLSCNRLSGS-----IPSAIFTTYTLK 104
           R+  L I    +T    G +   L    SL+ L+L+ N L          + +     L+
Sbjct: 257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316

Query: 105 YVSFRKNQLSGA-FPSFAF---NTSSLQYLDFGFNTLSGEIPANIC----SNLPFLEYLA 156
            +  +    + A    F+        L  L    N L       +C         L  L 
Sbjct: 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376

Query: 157 LSQNMFH----GGIPSALSNCAYLQRLGLSSNDFSGVVPKEIC-----NLTKLKGLYLGG 207
           L+           + + L     L+ L LS+N        ++          L+ L L  
Sbjct: 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD 436

Query: 208 NRL 210
              
Sbjct: 437 IYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 36/181 (19%), Positives = 58/181 (32%), Gaps = 22/181 (12%)

Query: 55  VTVLNISRLNLTGT-IPSQLGNLSSLQSLNLSCNRLS----GSIPSAIFTTYTLKYVSFR 109
           +  L+I    L+       L  L   Q + L    L+      I SA+     L  ++ R
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 110 KNQLSGA-----FPSFAFNTSSLQYLDFGFNTLSGEIPANICSNL---PFLEYLALSQNM 161
            N+L               +  +Q L      L+G     + S L   P L+ L LS N+
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 162 F-HGGIPS----ALSNCAYLQRLGLSSNDFSGVVPKEIC----NLTKLKGLYLGGNRLQG 212
               G+       L     L++L L     S    + +          K L +  N +  
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184

Query: 213 E 213
            
Sbjct: 185 A 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 35/202 (17%), Positives = 79/202 (39%), Gaps = 16/202 (7%)

Query: 71  SQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYL 130
                L++    NL    ++  +     +   ++  +   + +  +     F T +L+ L
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQKELS--GVQNFNGDNSNIQ-SLAGMQFFT-NLKEL 68

Query: 131 DFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVV 190
               N +S ++   +  +L  LE L++++N       + + +   L RL L +N+     
Sbjct: 69  HLSHNQIS-DLS-PL-KDLTKLEELSVNRNRLK--NLNGIPSAC-LSRLFLDNNELRDTD 122

Query: 191 PKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGI 250
              + +L  L+ L +  N+L+  I    G L++LE++ L  NE+          L  +  
Sbjct: 123 S--LIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNW 176

Query: 251 LQLSDNFLTGITPSSIYKLLFS 272
           + L+             +L  +
Sbjct: 177 IDLTGQKCVNEPVKYQPELYIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 39/212 (18%), Positives = 76/212 (35%), Gaps = 18/212 (8%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS 114
               N+ + ++T  +      LS +Q+ N   + +  S+ + +     LK +    NQ+S
Sbjct: 21  AVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHLSHNQIS 76

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCA 174
                   + + L+ L    N L   +          L  L L  N        +L +  
Sbjct: 77  -DLSPLK-DLTKLEELSVNRNRLK-NLNG---IPSACLSRLFLDNNELRD--TDSLIHLK 128

Query: 175 YLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENEL 234
            L+ L + +N    +V   +  L+KL+ L L GN +          L ++  + L+  + 
Sbjct: 129 NLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGGLT--RLKKVNWIDLTGQKC 184

Query: 235 QGAIPREWGNLTGLGILQLSDNFLTGITPSSI 266
                +    L     ++  D     I+P  I
Sbjct: 185 VNEPVKYQPELYITNTVKDPDGRW--ISPYYI 214

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 38/228 (16%), Positives = 67/228 (29%), Gaps = 42/228 (18%)

Query: 73  LGNLSSLQSLNLSCNRLSG----SIPSAIFTTYTLKYVSFRKNQLS-------------G 115
           L     L ++ LS N         +   +     L+++    N L               
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149

Query: 116 AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNL---PFLEYLALSQNMFH-----GGIP 167
           A    A N   L+ +  G N L                 L  + + QN          + 
Sbjct: 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL 209

Query: 168 SALSNCAYLQRLGLSSNDFSGVVPKEIC----NLTKLKGLYLGGNRLQ-------GEIPR 216
             L+ C  L+ L L  N F+ +    +     +   L+ L L    L         +   
Sbjct: 210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269

Query: 217 ESGNLAELELMSLSENEL--QGAIP---REWGNLTGLGILQLSDNFLT 259
           +  N+  L+ + L  NE+               +  L  L+L+ N  +
Sbjct: 270 KLENIG-LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 28/151 (18%), Positives = 51/151 (33%), Gaps = 30/151 (19%)

Query: 73  LGNLSSLQSLNLSCNRLSG----SIPSAIFTTYTLKYVSFRKNQLS--GA---FPSFAFN 123
           +   S ++  +L  + ++     S+ + +    ++K +    N +    A     + A  
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 124 TSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSS 183
              L+  +F      G +   I   L     L             AL  C  L  + LS 
Sbjct: 60  KD-LEIAEFSDIFT-GRVKDEIPEAL---RLLL-----------QALLKCPKLHTVRLSD 103

Query: 184 NDFSGVVPKEICNL----TKLKGLYLGGNRL 210
           N F     + + +     T L+ LYL  N L
Sbjct: 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 51.2 bits (123), Expect = 6e-08
 Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 4/121 (3%)

Query: 141 IPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKL 200
           +PA I +N    + L L  N      P    +   L+ L L SN    +      +LT+L
Sbjct: 34  VPAGIPTNA---QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90

Query: 201 KGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTG 260
             L LG N+L          L  L+ + +  N+L   +PR    LT L  L L  N L  
Sbjct: 91  TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS 149

Query: 261 I 261
           I
Sbjct: 150 I 150

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.8 bits (114), Expect = 9e-07
 Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 21/170 (12%)

Query: 41  CNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTT 100
           C+ T V C   S R             ++P+  G  ++ Q L L  N+++  +   +F +
Sbjct: 19  CSGTTVDC--RSKRHA-----------SVPA--GIPTNAQILYLHDNQIT-KLEPGVFDS 62

Query: 101 YT-LKYVSFRKNQLSGAFPSFAFNT-SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS 158
              LK +    NQL  A P   F++ + L  LD G N L+  +P+ +   L  L+ L + 
Sbjct: 63  LINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMC 120

Query: 159 QNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGN 208
            N     +P  +    +L  L L  N    +       L+ L   YL GN
Sbjct: 121 CNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 14/146 (9%)

Query: 92  SIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNT-SSLQYLDFGFNTLSGEIPANICSNLP 150
           S+P+ I T   + Y+    NQ++       F++  +L+ L  G N L   +P  +  +L 
Sbjct: 33  SVPAGIPTNAQILYLHD--NQIT-KLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLT 88

Query: 151 FLEYLALSQNMFHG---GIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGG 207
            L  L L  N        +   L +   L+ L +  N  + + P+ I  LT L  L L  
Sbjct: 89  QLTVLDLGTNQLTVLPSAVFDRLVH---LKELFMCCNKLTEL-PRGIERLTHLTHLALDQ 144

Query: 208 NRLQGEIPRES-GNLAELELMSLSEN 232
           N+L+  IP  +   L+ L    L  N
Sbjct: 145 NQLKS-IPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 165 GIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAEL 224
           GIP         Q L L  N  + + P    +L  LK LYLG N+L         +L +L
Sbjct: 37  GIP------TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90

Query: 225 ELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
            ++ L  N+L       +  L  L  L +  N LT + P  I +L
Sbjct: 91  TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERL 134

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 8/119 (6%)

Query: 140 EIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTK 199
            +P  I  ++     L L  N F   +P  LSN  +L  + LS+N  S +  +   N+T+
Sbjct: 24  VLPKGIPRDV---TELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ 79

Query: 200 LKGLYLGGNRLQGEIPRES-GNLAELELMSLSENELQGAIPRE-WGNLTGLGILQLSDN 256
           L  L L  NRL+  IP  +   L  L L+SL  N++   +P   + +L+ L  L +  N
Sbjct: 80  LLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 17/132 (12%)

Query: 41  CNWTGVTCDVHSHRVTVL------NISRLNLTG----TIPSQLGNLSSLQSLNLSCNRLS 90
           C  T V C   +  + VL      +++ L L G     +P +L N   L  ++LS NR+S
Sbjct: 10  CLDTVVRC--SNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS 67

Query: 91  GSIPSAIFTTYT-LKYVSFRKNQLSGAFPSFAFNT-SSLQYLDFGFNTLSGEIPANICSN 148
            ++ +  F+  T L  +    N+L    P   F+   SL+ L    N +S  +P    ++
Sbjct: 68  -TLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFND 124

Query: 149 LPFLEYLALSQN 160
           L  L +LA+  N
Sbjct: 125 LSALSHLAIGAN 136

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 48/262 (18%), Positives = 83/262 (31%), Gaps = 38/262 (14%)

Query: 51  HSHRVTVLNISRLNLTGTIPSQLG-----NLSSLQSLNLSCNRLSGSIPSAIF-----TT 100
             H VT L++S  NL      +L        +S+ SLNLS N L       +        
Sbjct: 20  IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79

Query: 101 YTLKYVSFRKNQLSGA-----FPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPF---- 151
             +  ++   N LS         + A    ++  LD G+N  S +  +            
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 152 LEYLALSQNMFHG----GIPSALSNC-AYLQRLGLSSNDFSGVVPKEICNL-----TKLK 201
           +  L L  N         +   L+   A +  L L  N+ +     E+          + 
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT 199

Query: 202 GLYLGGNRLQGEIPRE-----SGNLAELELMSLSENELQG----AIPREWGNLTGLGILQ 252
            L L  N L  +   E     S     +  ++L  N L G     +     +L  L  + 
Sbjct: 200 SLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259

Query: 253 LSDNFLTGITPSSIYKLLFSIK 274
           L  + +  ++      L  +  
Sbjct: 260 LDYDIVKNMSKEQCKALGAAFP 281

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 33/165 (20%), Positives = 52/165 (31%), Gaps = 24/165 (14%)

Query: 73  LGNLSSLQSLNLSCNRLSGSIPSAIF-----TTYTLKYVSFRKNQLSGA-----FPSFAF 122
                 + SL+LS N L       +      T  ++  ++   N L            A 
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 123 NTSSLQYLDFGFNTLSGEIPANICSNLPF----LEYLALSQNMF----HGGIPSALSNC- 173
             +++  L+   N LS +    +   L      +  L L  N F          A SN  
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 174 AYLQRLGLSSNDFSGVVPKEICNL-----TKLKGLYLGGNRLQGE 213
           A +  L L  ND       E+  +       +  L L GN L  +
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 28/189 (14%), Positives = 56/189 (29%), Gaps = 30/189 (15%)

Query: 77  SSLQSLNLSCNRLS----GSIPSAIFTTY-TLKYVSFRKNQL--SGAFP---SFAFNTSS 126
           +++ SLNL  N L+      +   + +   ++  +    N L           F+   + 
Sbjct: 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH 226

Query: 127 LQYLDFGFNTLSGEIPANICS---NLPFLEYLALSQNMFHG-------GIPSALSNCAYL 176
           +  L+   N L G    N+     +L  L+ + L  ++           + +A  N   +
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286

Query: 177 QRLGLSSNDFSGVVPKEICNL-----TKLKGLYLGGNRL-----QGEIPRESGNLAELEL 226
             +  +  +        I NL      K     L    L           +     EL  
Sbjct: 287 ILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRE 346

Query: 227 MSLSENELQ 235
              +   L 
Sbjct: 347 SIQTCKPLL 355

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 3e-06
 Identities = 23/110 (20%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSFRKNQLS 114
           + L  +R          L    +L  L +   +    +          L+ ++  K+ L 
Sbjct: 11  SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 115 GAFPSFAF-NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFH 163
                 AF  T  L  L+  FN L   +       L  L+ L LS N  H
Sbjct: 70  -FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 21/87 (24%), Positives = 30/87 (34%), Gaps = 1/87 (1%)

Query: 125 SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSN 184
            +L  L          +       L  L  L + ++      P A      L RL LS N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 185 DFSGVVPKEICNLTKLKGLYLGGNRLQ 211
               +  K +  L+ L+ L L GN L 
Sbjct: 91  ALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 190 VPKEICNLTKLKGLYLGGNRLQGEIPRES-GNLAELELMSLSENELQGAIPRE-WGNLTG 247
               +     L  LY+   +    +       L EL  +++ ++ L+  +  + +     
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 248 LGILQLSDNFLTGITPSSIYKL 269
           L  L LS N L  ++  ++  L
Sbjct: 82  LSRLNLSFNALESLSWKTVQGL 103

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 3/97 (3%)

Query: 140 EIPANICSNLPFLEYLALSQNMFHGGIPS-ALSNCAYLQRLGLSSNDFSGVVPKEICNLT 198
           +   ++      L  L +        +    L     L+ L +  +    V P       
Sbjct: 22  DSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80

Query: 199 KLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ 235
           +L  L L  N L+  +  ++     L+ + LS N L 
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.5 bits (109), Expect = 4e-06
 Identities = 28/147 (19%), Positives = 47/147 (31%), Gaps = 23/147 (15%)

Query: 121 AFNTSSLQYLDFGFNTLSGEIPANIC-SNLPFLEYLALSQNMFHGGIPSALSNCAYLQRL 179
                +L+ L+     L   +  +I  S+LP LE L L   +   G    ++    L   
Sbjct: 189 KKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248

Query: 180 GLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPR---ESGNLAELELMSLSENELQG 236
                               LK L +     Q  +     ES  L +LE M +S   L  
Sbjct: 249 D---------------RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293

Query: 237 ----AIPREWGNLTGLGILQLSDNFLT 259
                +      +  L  + +  N+L+
Sbjct: 294 EGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 29/216 (13%), Positives = 60/216 (27%), Gaps = 37/216 (17%)

Query: 13  DALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQ 72
           D ++  K    H    F+         +     V        + +LN  ++  T  +   
Sbjct: 129 DGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIG 188

Query: 73  LGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF 132
                +L+SL +    L  S+   I               L    P+       L+ L  
Sbjct: 189 KKPRPNLKSLEIISGGLPDSVVEDI---------------LGSDLPN-------LEKLVL 226

Query: 133 --------GFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY---LQRLGL 181
                       ++   P       P L++L +        +            L+ + +
Sbjct: 227 YVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI 286

Query: 182 SSNDFSGVVPKEIC----NLTKLKGLYLGGNRLQGE 213
           S+   +    + +      +  LK + +  N L  E
Sbjct: 287 SAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 13/107 (12%)

Query: 166 IPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELE 225
           + + LS     + L LS+N+   +    +  +  L+ L LG N ++ +I         LE
Sbjct: 40  MDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96

Query: 226 LMSLSENE---LQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
            + +S N+   L G        L  L +L +S+N +T      I KL
Sbjct: 97  ELWISYNQIASLSG-----IEKLVNLRVLYMSNNKIT--NWGEIDKL 136

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 35/154 (22%)

Query: 69  IPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQ 128
           + + L  L + + L LS N +             +  +S                  +L+
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-----------KISSLS---------------GMENLR 73

Query: 129 YLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSN---D 185
            L  G N +  +I  N+ +    LE L +S N       S +     L+ L +S+N   +
Sbjct: 74  ILSLGRNLIK-KIE-NLDAVADTLEELWISYNQIA--SLSGIEKLVNLRVLYMSNNKITN 129

Query: 186 FSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESG 219
           +  +   ++  L KL+ L L GN L  +    + 
Sbjct: 130 WGEI--DKLAALDKLEDLLLAGNPLYNDYKENNA 161

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 9/101 (8%)

Query: 165 GIPSALSNCAYLQRLGLSSNDFSGVVPKEI-CNLTKLKGLYLGGNRLQGEIPRESGNLAE 223
            IP       +   L L+ N+   +    +   L  L  L L  N+L G  P      + 
Sbjct: 26  DIP------LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 224 LELMSLSENELQGAIPRE-WGNLTGLGILQLSDNFLTGITP 263
           ++ + L EN+++  I  + +  L  L  L L DN ++ + P
Sbjct: 80  IQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMP 119

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 12/121 (9%)

Query: 141 IPANICSNLPFLEYLALSQNMFHGGIPSAL-SNCAYLQRLGLSSNDFSGVVPKEICNLTK 199
           IP +I  +      L L+ N         L     +L +L L  N  +G+ P      + 
Sbjct: 23  IPRDIPLHT---TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 200 LKGLYLGGNRLQGEIPRES-GNLAELELMSLSENELQGAIPREWG---NLTGLGILQLSD 255
           ++ L LG N+++ EI  +    L +L+ ++L +N++   +    G   +L  L  L L+ 
Sbjct: 80  IQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQIS-CVMP--GSFEHLNSLTSLNLAS 135

Query: 256 N 256
           N
Sbjct: 136 N 136

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 12/100 (12%)

Query: 165 GIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAEL 224
           GIP      +   RL L SN    +       LT+L  L L  N++Q         L +L
Sbjct: 25  GIP------SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL 78

Query: 225 ELMSLSENELQGAIPREWG---NLTGLGILQLSDNFLTGI 261
            ++ L EN+LQ ++P   G    LT L  L L  N L  +
Sbjct: 79  TILYLHENKLQ-SLPN--GVFDKLTQLKELALDTNQLKSV 115

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 43/149 (28%), Positives = 62/149 (41%), Gaps = 19/149 (12%)

Query: 92  SIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPF 151
           S+P+ I    T  Y+    N L           +SL  L  G N L   +P  + + L  
Sbjct: 21  SVPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTS 77

Query: 152 LEYLALSQNMFHG---GIPSALSNCAYLQRLGLSSNDF----SGVVPKEICNLTKLKGLY 204
           L YL LS N       G+   L+    L+ L L++N       GV  K    LT+LK L 
Sbjct: 78  LTYLNLSTNQLQSLPNGVFDKLTQ---LKELALNTNQLQSLPDGVFDK----LTQLKDLR 130

Query: 205 LGGNRLQGEIPRES-GNLAELELMSLSEN 232
           L  N+L+  +P      L  L+ + L +N
Sbjct: 131 LYQNQLKS-VPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 32/97 (32%), Positives = 41/97 (42%), Gaps = 6/97 (6%)

Query: 165 GIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAEL 224
           GIP      A    L L +N    +       LT L  LYLGGN+LQ         L  L
Sbjct: 25  GIP------AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78

Query: 225 ELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGI 261
             ++LS N+LQ      +  LT L  L L+ N L  +
Sbjct: 79  TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSL 115

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 40/155 (25%), Positives = 61/155 (39%), Gaps = 14/155 (9%)

Query: 41  CNWTGVTCDVHSH---------RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSG 91
           C+ T V C              + T L++   +L          L+SL  L L  N+L  
Sbjct: 7   CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ- 65

Query: 92  SIPSAIFTTYT-LKYVSFRKNQLSGAFPSFAFNT-SSLQYLDFGFNTLSGEIPANICSNL 149
           S+P+ +F   T L Y++   NQL  + P+  F+  + L+ L    N L   +P  +   L
Sbjct: 66  SLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKL 123

Query: 150 PFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSN 184
             L+ L L QN               LQ + L  N
Sbjct: 124 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 33/195 (16%), Positives = 70/195 (35%), Gaps = 15/195 (7%)

Query: 51  HSHRVTVLNISRLNLTGTIPSQLG-NLSSLQSLNLS-CNRLSGSIPSAIFTTYT-LKYVS 107
               +  + + R+ +T      +  +  + + L LS C   S    +AI  T   LK + 
Sbjct: 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELD 162

Query: 108 FRKNQLSG----AFPSFAFNTSSLQYLDFG--FNTLSGEIPANICSNLPFLEYLALSQNM 161
            R++ +          F    +SL  L+     + +S      + +  P L+ L L++ +
Sbjct: 163 LRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222

Query: 162 FHGGIPSALSNCAYLQRLGLSS------NDFSGVVPKEICNLTKLKGLYLGGNRLQGEIP 215
               + + L     L+ LG          D    +   +    +L+ L    + +   +P
Sbjct: 223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP 282

Query: 216 RESGNLAELELMSLS 230
                 + L  ++LS
Sbjct: 283 AVYSVCSRLTTLNLS 297

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 21/141 (14%), Positives = 47/141 (33%), Gaps = 6/141 (4%)

Query: 51  HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSC--NRLSGSIPSAIFTTY----TLK 104
               +  L ++R      + + L     L+ L        +   + S +         L+
Sbjct: 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELR 268

Query: 105 YVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHG 164
            +S   + +    P+     S L  L+  + T+       +    P L+ L +   +   
Sbjct: 269 CLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDA 328

Query: 165 GIPSALSNCAYLQRLGLSSND 185
           G+    S C  L+ L +  ++
Sbjct: 329 GLEVLASTCKDLRELRVFPSE 349

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 33/225 (14%), Positives = 70/225 (31%), Gaps = 19/225 (8%)

Query: 54  RVTVLNISRLNLTG----TIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT-LKYVSF 108
                N+      G     I +   + + L+ + L    ++      I  ++   K +  
Sbjct: 78  HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL 137

Query: 109 RK-NQLS-GAFPSFAFNTSSLQYLD---FGFNTLSGEIPANICSNLPFLEYLALSQNMFH 163
                 S     + A    +L+ LD      + +SG   ++       L  L +S     
Sbjct: 138 SSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASE 197

Query: 164 ---GGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGE------I 214
                +   ++ C  L+ L L+       +   +    +L+ L  GG   +        +
Sbjct: 198 VSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257

Query: 215 PRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLT 259
                   EL  +S   + +   +P  +   + L  L LS   + 
Sbjct: 258 SVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 11/117 (9%)

Query: 123 NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPS--ALSNCAYLQRLG 180
           N    + LD     +   +  N+ + L   + +  S N     I           L+ L 
Sbjct: 17  NAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDN----EIRKLDGFPLLRRLKTLL 70

Query: 181 LSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ--GEIPRESGNLAELELMSLSENELQ 235
           +++N    +       L  L  L L  N L   G++   + +L  L  + +  N + 
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLA-SLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 20/141 (14%), Positives = 39/141 (27%), Gaps = 33/141 (23%)

Query: 71  SQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYL 130
           +Q  N    + L+L   ++                       L                +
Sbjct: 13  AQYTNAVRDRELDLRGYKIP------------------VIENLGATLD-------QFDAI 47

Query: 131 DFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSN---DFS 187
           DF  N +  ++       L  L+ L ++ N               L  L L++N   +  
Sbjct: 48  DFSDNEIR-KL-DGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG 104

Query: 188 GVVPKEICNLTKLKGLYLGGN 208
            +    + +L  L  L +  N
Sbjct: 105 DL--DPLASLKSLTYLCILRN 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 3/104 (2%)

Query: 57  VLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGA 116
           VL+  + N  G I        +L+ L+L    L  S+ S +     LK +   +N++ G 
Sbjct: 30  VLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGG 86

Query: 117 FPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQN 160
               A    +L +L+   N L           L  L+ L L   
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 123 NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSA--LSNCAYLQRLG 180
             ++++ L       +      + +    LE+L+L       G+ S   L     L++L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV----GLISVSNLPKLPKLKKLE 77

Query: 181 LSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ--GEIPRESGNLAELELMSLSENEL 234
           LS N   G +      L  L  L L GN+L+    +      L  L+ + L   E+
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEV 132

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 49/284 (17%), Positives = 85/284 (29%), Gaps = 54/284 (19%)

Query: 12  RDALLALKAHITHDPTNF--------FAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRL 63
           R ALL L+      P             K W     VC    V C     ++  LN+   
Sbjct: 141 RQALLELR------PAKNVLIDGVLGSGKTWVALD-VCLSYKVQC-KMDFKIFWLNLKNC 192

Query: 64  NLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFN 123
           N   T+   L  L      N   +R   S      +   L+  S  + +L     S  + 
Sbjct: 193 NSPETVLEMLQKLLYQIDPNW-TSRSDHS------SNIKLRIHSI-QAELRRLLKSKPYE 244

Query: 124 TSSLQYLD----------FGFN--TLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALS 171
              L  L           F  +   L       +   L       +S +     +     
Sbjct: 245 N-CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 172 NCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPR----ESGNLAEL-EL 226
               L+ L     D    +P+E+      + L +    ++  +      +  N  +L  +
Sbjct: 304 KSLLLKYLDCRPQD----LPREVLTTNPRR-LSIIAESIRDGLATWDNWKHVNCDKLTTI 358

Query: 227 MSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL 270
           +  S N L+ A  R+      L +   S +    I P+ +  L+
Sbjct: 359 IESSLNVLEPAEYRK--MFDRLSVFPPSAH----I-PTILLSLI 395

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 3/104 (2%)

Query: 57  VLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGA 116
           VL+ SR N  G +         L+ L+     L+ SI + +     LK +    N++SG 
Sbjct: 23  VLDNSRSNE-GKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGG 79

Query: 117 FPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQN 160
               A    +L +L+   N +           L  L+ L L   
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 27/156 (17%), Positives = 50/156 (32%), Gaps = 18/156 (11%)

Query: 76  LSSLQSLNLSCNRLSGSIPSAI-----FTTYTLKYVSFRKNQLSGA-FPSFAFNTSSLQY 129
           LSSL+ LNL+  R++    + +        + L  V+    QL  A   +        + 
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARK 130

Query: 130 LDFGFNTLSGE----IPANICSNLPFLEYLALSQNMFHGG----IPSALSNCAYLQRLGL 181
           L    N+L  E    +   +  +   +  L LS N         +   L+    +  L L
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSL 190

Query: 182 SSNDFSGVVPKEICNL----TKLKGLYLGGNRLQGE 213
                     + +        +L+ L +  N     
Sbjct: 191 LHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 25/184 (13%), Positives = 54/184 (29%), Gaps = 24/184 (13%)

Query: 75  NLSSLQSLNLSCNRLSGSIPSAIFTT-YTLKYVSFRKNQLSGA-----FPSFAFNTSSLQ 128
              +L  +NL+  +L  +    +       + +  + N L              +   + 
Sbjct: 99  GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQIT 158

Query: 129 YLDFGFNTLSGEIPANICSNL---PFLEYLALSQNMF--HGG--IPSALSNCAYLQRLGL 181
            L    N L+    A +   L     + +L+L        G   + + L     LQ L +
Sbjct: 159 TLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNV 218

Query: 182 SSNDFSGVVPKEICNL----TKLKGLYLGGNRLQ-------GEIPRESGNLAELELMSLS 230
           + N         +         L+ L+L  N L         ++   +   A + +    
Sbjct: 219 AYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTE 278

Query: 231 ENEL 234
              +
Sbjct: 279 GTAV 282

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 14/96 (14%)

Query: 165 GIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESG---NL 221
           GIP+        Q L L  N  + + P     LT+L  L L  N+L   +P  +G    L
Sbjct: 27  GIPTTT------QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLP--AGVFDKL 77

Query: 222 AELELMSLSENELQGAIPRE-WGNLTGLGILQLSDN 256
            +L  +SL++N+L+ +IPR  + NL  L  + L +N
Sbjct: 78  TQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNN 112

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 26/198 (13%), Positives = 57/198 (28%), Gaps = 19/198 (9%)

Query: 51  HSHRVTVLNISRLNLT--GTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSF 108
           +   +  + +    +           NL      +L+ +         +     L  +  
Sbjct: 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL 277

Query: 109 RKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPS 168
                +   P      + ++ LD  +  L  E    +    P LE L     +   G+  
Sbjct: 278 SYMGPNE-MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV 336

Query: 169 ALSNCAYLQRLGLSSNDFSGVVPKEICNLT------------KLKGLYLGGNRLQGE--- 213
               C  L+RL +        +  E   ++            +L+ + +  + +  E   
Sbjct: 337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE 396

Query: 214 -IPRESGNLAELELMSLS 230
            I     NL +  L+ L 
Sbjct: 397 SIGTYLKNLCDFRLVLLD 414

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 18/98 (18%)

Query: 165 GIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESG---NL 221
           GIP+        QRL L++N  + + P    +L  L+ LY   N+L   IP  +G    L
Sbjct: 30  GIPTDK------QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIP--TGVFDKL 80

Query: 222 AELELMSLSENELQGAIPREWG---NLTGLGILQLSDN 256
            +L  + L++N L+ +IPR  G   NL  L  + L +N
Sbjct: 81  TQLTQLDLNDNHLK-SIPR--GAFDNLKSLTHIYLYNN 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	279
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.98
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.95
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.95
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.93
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.93
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.93
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.92
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.92
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.92
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.91
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.91
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.91
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.89
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.89
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.89
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.89
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.87
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.85
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.85
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.85
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.84
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.83
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.83
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.83
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.83
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.82
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.82
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.81
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.8
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.8
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.8
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.79
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.77
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.76
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.71
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.67
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.61
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.6
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.6
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.59
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.57
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.55
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.54
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.54
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.53
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.44
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.42
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.34
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.24
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.18
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.08
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.95
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.92
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.91
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.58
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.55
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.53
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.37
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.36
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.22
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.18
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.4
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.23
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.16
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.53
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	88.13

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=4.9e-39  Score=268.28  Aligned_cols=258  Identities=33%  Similarity=0.543  Sum_probs=192.7

Q ss_pred             CCChhHHHHHHHHHHhccCCCcccccCCCCCCCCCcc--eeeeeeCCCC--CeEEEEEcCCCCccc--cCcccccCCCCC
Q 041953            6 STITTDRDALLALKAHITHDPTNFFAKNWNTSTPVCN--WTGVTCDVHS--HRVTVLNISRLNLTG--TIPSQLGNLSSL   79 (279)
Q Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c~--~~~~~~~~~~--~~l~~L~l~~~~l~~--~~~~~~~~l~~L   79 (279)
                      .+.++|.++|++||+.+. +|. .+ .+|..+.++|.  |.|+.|+...  .+|+.|+++++.+.+  .+|..|.++++|
T Consensus         2 ~c~~~~~~aL~~~k~~~~-~~~-~l-~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L   78 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLG-NPT-TL-SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL   78 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT-CCG-GG-TTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred             CCCHHHHHHHHHHHHhcC-Ccc-cc-cCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCC
Confidence            477899999999999996 665 55 89988888998  9999998643  689999999999998  889999999999


Q ss_pred             CEEEccC-CcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEee
Q 041953           80 QSLNLSC-NRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS  158 (279)
Q Consensus        80 ~~L~l~~-~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  158 (279)
                      ++|++++ |.+.+.+|..|..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+ ..+++|++|+++
T Consensus        79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~  157 (313)
T 1ogq_A           79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFD  157 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECC
T ss_pred             CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH-hcCCCCCeEECc
Confidence            9999995 88888889999999999999999999988888888889999999999998876666655 778888888888


Q ss_pred             cccccccCCccCCCCc-cCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCccc
Q 041953          159 QNMFHGGIPSALSNCA-YLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGA  237 (279)
Q Consensus       159 ~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~  237 (279)
                      +|.+++..|..+..++ .|+.|++++|.+.+..|..+..+. |+.|++++|.+++..|..+..+++|+.|++++|++++.
T Consensus       158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  236 (313)
T 1ogq_A          158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence            8888877777777776 778888887777766665555554 66666666655544455555445555555554444433


Q ss_pred             CCccccCCCCCCeEEccCCcccccCccccccc
Q 041953          238 IPREWGNLTGLGILQLSDNFLTGITPSSIYKL  269 (279)
Q Consensus       238 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  269 (279)
                      .+. +..+++|++|++++|.+++..|..+..+
T Consensus       237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  267 (313)
T 1ogq_A          237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQL  267 (313)
T ss_dssp             GGG-CCCCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred             cCc-ccccCCCCEEECcCCcccCcCChHHhcC
Confidence            322 3344444444444444444444444433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=2.1e-36  Score=253.85  Aligned_cols=265  Identities=22%  Similarity=0.276  Sum_probs=238.4

Q ss_pred             CCCChhHHHHHHHHHHhccCCCcccccCCC----CCCCCCcceeeeeeC--------CCCCeEEEEEcCCCCccccCccc
Q 041953            5 TSTITTDRDALLALKAHITHDPTNFFAKNW----NTSTPVCNWTGVTCD--------VHSHRVTVLNISRLNLTGTIPSQ   72 (279)
Q Consensus         5 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w----~~~~~~c~~~~~~~~--------~~~~~l~~L~l~~~~l~~~~~~~   72 (279)
                      .....+|..+|+.||..+..++..|. ..|    ....++|.|.|+.|.        ....+++.|+++++.++ .+|..
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~-~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~   99 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWH-SAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQ   99 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHH-HHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSC
T ss_pred             cccCchHHHHHHHHHHhccCCchhhh-hhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChh
Confidence            44567899999999999877888888 888    567799999999995        23468999999999998 67888


Q ss_pred             ccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhh-------
Q 041953           73 LGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANI-------  145 (279)
Q Consensus        73 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-------  145 (279)
                      +..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+       
T Consensus       100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~  177 (328)
T 4fcg_A          100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG  177 (328)
T ss_dssp             GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred             hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence            888999999999999999 88999999999999999999999 789999999999999999988877888765       


Q ss_pred             -hcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCC
Q 041953          146 -CSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAEL  224 (279)
Q Consensus       146 -~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L  224 (279)
                       +.++++|++|++++|.++ .+|..+..+++|++|++++|.+.+ .|..+..+++|+.|++++|.+.+.+|..+..+++|
T Consensus       178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L  255 (328)
T 4fcg_A          178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL  255 (328)
T ss_dssp             CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred             hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence             235999999999999998 888889999999999999999994 66678899999999999999988999999999999


Q ss_pred             CEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccccccccc
Q 041953          225 ELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKF  275 (279)
Q Consensus       225 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~  275 (279)
                      ++|++++|++.+.+|..+.++++|+.|++++|++.+.+|+.++.++.+..+
T Consensus       256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l  306 (328)
T 4fcg_A          256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII  306 (328)
T ss_dssp             CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred             CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence            999999999999999999999999999999999999999999999876543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7.3e-34  Score=263.46  Aligned_cols=261  Identities=28%  Similarity=0.446  Sum_probs=211.6

Q ss_pred             CCCCCCChhHHHHHHHHHHhccCCCcccccCCCCCCCCCcceeeeeeCCCCCeEEEEEcCCCCcccc---Cc--------
Q 041953            2 TANTSTITTDRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGT---IP--------   70 (279)
Q Consensus         2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~---~~--------   70 (279)
                      ++.+...++|++||++||+.+. ||. .+ .+|..+.++|.|.|+.|+  ..+|+.|+++++.+.+.   ++        
T Consensus         4 ~~~~~~~~~~~~all~~k~~~~-~~~-~l-~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~   78 (768)
T 3rgz_A            4 ASPSQSLYREIHQLISFKDVLP-DKN-LL-PDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTG   78 (768)
T ss_dssp             ----CCHHHHHHHHHHHHTTCS-CTT-SS-TTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTT
T ss_pred             CccccCCHHHHHHHHHHHhhCC-Ccc-cc-cCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCc
Confidence            3445557889999999999998 887 66 899888899999999998  46999999999988765   33        


Q ss_pred             ---------------ccccCCCCCCEEEccCCcccCCCCc--cccCCCCCcEEEcccCcccccCCccC-CCCCCCcEEEe
Q 041953           71 ---------------SQLGNLSSLQSLNLSCNRLSGSIPS--AIFTTYTLKYVSFRKNQLSGAFPSFA-FNTSSLQYLDF  132 (279)
Q Consensus        71 ---------------~~~~~l~~L~~L~l~~~~i~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l  132 (279)
                                     ..|..+++|++|++++|.+.+.+|.  .+..+++|++|++++|.+.+..|..+ ..+++|++|++
T Consensus        79 L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L  158 (768)
T 3rgz_A           79 LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL  158 (768)
T ss_dssp             CCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred             ccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEEC
Confidence                           4677778888888888888777777  78888888888888888876666654 67888888888


Q ss_pred             eccccccccChhh--hcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccc
Q 041953          133 GFNTLSGEIPANI--CSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRL  210 (279)
Q Consensus       133 ~~n~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~  210 (279)
                      ++|.+.+..+...  +.++++|++|++++|.+.+..+  +..+++|++|++++|.+.+..|. +..+++|++|++++|.+
T Consensus       159 s~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l  235 (768)
T 3rgz_A          159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL  235 (768)
T ss_dssp             CSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCC
T ss_pred             CCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcC
Confidence            8888875544432  4778889999998888875544  37788899999999998876666 88899999999999999


Q ss_pred             ccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccc-ccc
Q 041953          211 QGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL-LFS  272 (279)
Q Consensus       211 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~  272 (279)
                      ++..|..+..+++|++|++++|++.+..|..  .+++|++|++++|.+++.+|..+... +.+
T Consensus       236 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L  296 (768)
T 3rgz_A          236 SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTL  296 (768)
T ss_dssp             CSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTC
T ss_pred             CCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcC
Confidence            8888888999999999999999998777754  78899999999999998888777654 443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=7.5e-34  Score=258.09  Aligned_cols=247  Identities=20%  Similarity=0.290  Sum_probs=186.1

Q ss_pred             CCChhHHHHHHHHHHhccCCCcccccC-------CCCCCCCCcce---eeeeeCCCCCeEEEEEcCCCCccccCcccccC
Q 041953            6 STITTDRDALLALKAHITHDPTNFFAK-------NWNTSTPVCNW---TGVTCDVHSHRVTVLNISRLNLTGTIPSQLGN   75 (279)
Q Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~w~~~~~~c~~---~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~   75 (279)
                      +....|++||.+++.++. ++.|....       +|+.+.++|.|   .|+.|+.. .+|+.|+|+++++.+.+|..+++
T Consensus        26 ~~~~~d~~aL~~~~~~~~-~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~  103 (636)
T 4eco_A           26 AEYIKDYLALKEIWDALN-GKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQ  103 (636)
T ss_dssp             CHHHHHHHHHHHHHHHTT-GGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGG
T ss_pred             hhHHHHHHHHHHHHHHcC-CCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhc
Confidence            344579999999999986 55444323       79999999999   99999866 58999999999999999999999


Q ss_pred             CCCCCEEEccCCcc------------------------------------------------------------------
Q 041953           76 LSSLQSLNLSCNRL------------------------------------------------------------------   89 (279)
Q Consensus        76 l~~L~~L~l~~~~i------------------------------------------------------------------   89 (279)
                      +++|+.|++++|.+                                                                  
T Consensus       104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l  183 (636)
T 4eco_A          104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL  183 (636)
T ss_dssp             CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCC
T ss_pred             CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccch
Confidence            99999999988843                                                                  


Q ss_pred             ------------cCCCCccccCCCCCcEEEcccCccccc-----------------CCccCC--CCCCCcEEEeeccccc
Q 041953           90 ------------SGSIPSAIFTTYTLKYVSFRKNQLSGA-----------------FPSFAF--NTSSLQYLDFGFNTLS  138 (279)
Q Consensus        90 ------------~~~~~~~~~~~~~L~~L~l~~n~~~~~-----------------~~~~~~--~l~~L~~L~l~~n~~~  138 (279)
                                  ++ +|..+..+++|++|++++|.+.+.                 +|..+.  .+++|++|++++|.+.
T Consensus       184 ~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~  262 (636)
T 4eco_A          184 KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL  262 (636)
T ss_dssp             CTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC
T ss_pred             hhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC
Confidence                        23 677788899999999999998864                 888888  8999999999999888


Q ss_pred             cccChhhhcCCCCCcEEEeeccc-ccc-cCCccCCCC------ccCcEEeccCCcccccCCc--ccCCCCCccEEEccCc
Q 041953          139 GEIPANICSNLPFLEYLALSQNM-FHG-GIPSALSNC------AYLQRLGLSSNDFSGVVPK--EICNLTKLKGLYLGGN  208 (279)
Q Consensus       139 ~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~~~~~~~~--~l~~~~~L~~L~l~~n  208 (279)
                      +.+|..+ .++++|++|++++|. +++ .+|..+..+      ++|++|++++|.+. .+|.  .+..+++|+.|++++|
T Consensus       263 ~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N  340 (636)
T 4eco_A          263 TKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYN  340 (636)
T ss_dssp             SSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSC
T ss_pred             ccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCC
Confidence            7777665 778888888888887 766 566655554      67777777777776 5665  6666777777777777


Q ss_pred             ccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCC-CCeEEccCCccc
Q 041953          209 RLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTG-LGILQLSDNFLT  259 (279)
Q Consensus       209 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~-L~~L~l~~n~l~  259 (279)
                      .+++.+| .+..+++|+.|++++|+++ .+|..+..+++ |+.|++++|.++
T Consensus       341 ~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~  390 (636)
T 4eco_A          341 QLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK  390 (636)
T ss_dssp             CCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS
T ss_pred             cCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc
Confidence            6665555 5555555666666655555 44545555555 555555555555

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.98  E-value=2.9e-32  Score=253.03  Aligned_cols=258  Identities=21%  Similarity=0.261  Sum_probs=210.0

Q ss_pred             CCCCChhHHHHHHHHHHhccCCCcccccCCCCCCCC-Ccce------------eeeeeCCCCCeEEEEEcCCCCccccCc
Q 041953            4 NTSTITTDRDALLALKAHITHDPTNFFAKNWNTSTP-VCNW------------TGVTCDVHSHRVTVLNISRLNLTGTIP   70 (279)
Q Consensus         4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~-~c~~------------~~~~~~~~~~~l~~L~l~~~~l~~~~~   70 (279)
                      .+++..+|.+||++||..+. +|.|....+|.+..+ .|.|            .|+.|+.. .+|+.|+|+++++.+.+|
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~-~~~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~-~~V~~L~Ls~~~L~G~ip  340 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALD-GKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFGAKGRVP  340 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTT-GGGCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT-SCEEEEECTTTCCEEEEC
T ss_pred             ccccchHHHHHHHHHHHHcC-CCCCCcCCCcccccCCccccccccccccccCcCceEecCC-CCEEEEECccCCCCCcCc
Confidence            34456789999999999996 663323122322222 3999            99999874 589999999999999999


Q ss_pred             ccccCCCCCCEEEc-cCCcccCC---------------------------------------------------------
Q 041953           71 SQLGNLSSLQSLNL-SCNRLSGS---------------------------------------------------------   92 (279)
Q Consensus        71 ~~~~~l~~L~~L~l-~~~~i~~~---------------------------------------------------------   92 (279)
                      +.|+++++|+.|++ ++|.+.+.                                                         
T Consensus       341 ~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~  420 (876)
T 4ecn_A          341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD  420 (876)
T ss_dssp             GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCC
T ss_pred             hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccc
Confidence            99999999999999 66644322                                                         


Q ss_pred             -------------------CCccccCCCCCcEEEcccCcccc-----------------cCCccCC--CCCCCcEEEeec
Q 041953           93 -------------------IPSAIFTTYTLKYVSFRKNQLSG-----------------AFPSFAF--NTSSLQYLDFGF  134 (279)
Q Consensus        93 -------------------~~~~~~~~~~L~~L~l~~n~~~~-----------------~~~~~~~--~l~~L~~L~l~~  134 (279)
                                         +|..+..+++|++|++++|.+.+                 .+|..+.  .+++|++|++++
T Consensus       421 ~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~  500 (876)
T 4ecn_A          421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN  500 (876)
T ss_dssp             CCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES
T ss_pred             cccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC
Confidence                               67788999999999999999997                 3888887  999999999999


Q ss_pred             cccccccChhhhcCCCCCcEEEeeccc-ccc-cCCccCCCC-------ccCcEEeccCCcccccCCc--ccCCCCCccEE
Q 041953          135 NTLSGEIPANICSNLPFLEYLALSQNM-FHG-GIPSALSNC-------AYLQRLGLSSNDFSGVVPK--EICNLTKLKGL  203 (279)
Q Consensus       135 n~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~l~~l-------~~L~~L~l~~n~~~~~~~~--~l~~~~~L~~L  203 (279)
                      |.+.+.+|..+ .++++|++|++++|. +++ .+|..+..+       ++|+.|++++|.+. .+|.  .+..+++|+.|
T Consensus       501 N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L  578 (876)
T 4ecn_A          501 CPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLL  578 (876)
T ss_dssp             CTTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEE
T ss_pred             CCCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEE
Confidence            99887888665 789999999999998 776 567655444       48999999999988 7777  78889999999


Q ss_pred             EccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCC-CCeEEccCCcccccCccccccc
Q 041953          204 YLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTG-LGILQLSDNFLTGITPSSIYKL  269 (279)
Q Consensus       204 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~  269 (279)
                      ++++|.++ .+| .+..+++|+.|++++|++. .+|..+..+++ |+.|++++|.++. +|..+...
T Consensus       579 ~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~  641 (876)
T 4ecn_A          579 DCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAK  641 (876)
T ss_dssp             ECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS-CCSCCCTT
T ss_pred             ECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc-Cchhhhcc
Confidence            99999988 777 8888899999999999988 77778888888 9999999998884 45555443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=8.1e-31  Score=218.56  Aligned_cols=219  Identities=26%  Similarity=0.353  Sum_probs=199.9

Q ss_pred             CCCeEEEEEcCC-CCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcE
Q 041953           51 HSHRVTVLNISR-LNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQY  129 (279)
Q Consensus        51 ~~~~l~~L~l~~-~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  129 (279)
                      ..+++++|++++ |.+.+.+|..|.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus        74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  153 (313)
T 1ogq_A           74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence            456899999995 8999899999999999999999999999889999999999999999999999889999999999999


Q ss_pred             EEeeccccccccChhhhcCCC-CCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCc
Q 041953          130 LDFGFNTLSGEIPANICSNLP-FLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGN  208 (279)
Q Consensus       130 L~l~~n~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n  208 (279)
                      |++++|++.+.+|..+ ..++ +|++|++++|.+.+..|..+..+. |+.|++++|.+.+..+..+..+++|+.|++++|
T Consensus       154 L~L~~N~l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  231 (313)
T 1ogq_A          154 ITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN  231 (313)
T ss_dssp             EECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred             EECcCCcccCcCCHHH-hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence            9999999987888777 6676 999999999999988999998887 999999999999888999999999999999999


Q ss_pred             ccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccccccc
Q 041953          209 RLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSI  273 (279)
Q Consensus       209 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~  273 (279)
                      .+++..+. +..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|.. ..++.+.
T Consensus       232 ~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~  294 (313)
T 1ogq_A          232 SLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFD  294 (313)
T ss_dssp             EECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSC
T ss_pred             ceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccC
Confidence            99866554 788899999999999999899999999999999999999999988865 5554443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=7.1e-30  Score=236.74  Aligned_cols=133  Identities=40%  Similarity=0.585  Sum_probs=62.1

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF  132 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  132 (279)
                      +++++|++++|.+++..|..|..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++
T Consensus       418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  497 (768)
T 3rgz_A          418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL  497 (768)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence            34555555555554444444554555555555555444444444444444444444444444444444444444444444


Q ss_pred             eccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcc
Q 041953          133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDF  186 (279)
Q Consensus       133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  186 (279)
                      ++|++.+.+|..+ ..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+
T Consensus       498 ~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          498 SNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             CSSCCCSCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             cCCccCCcCChHH-hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence            4444443333332 3444444444444444444444444444444444444433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=1.2e-29  Score=210.94  Aligned_cols=231  Identities=22%  Similarity=0.297  Sum_probs=187.9

Q ss_pred             CCCcceeeeeeCCC---------CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCC--CCccccCCCCCcEE
Q 041953           38 TPVCNWTGVTCDVH---------SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGS--IPSAIFTTYTLKYV  106 (279)
Q Consensus        38 ~~~c~~~~~~~~~~---------~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~--~~~~~~~~~~L~~L  106 (279)
                      ...|.|.++.|...         .+++++|++++|.++...+..|.++++|++|++++|.+...  .+..+..+++|++|
T Consensus         4 ~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L   83 (306)
T 2z66_A            4 RCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL   83 (306)
T ss_dssp             TCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEE
T ss_pred             CCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEE
Confidence            45688988888642         25799999999999866666689999999999999998732  25667778899999


Q ss_pred             EcccCcccccCCccCCCCCCCcEEEeeccccccccCh-hhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCc
Q 041953          107 SFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPA-NICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSND  185 (279)
Q Consensus       107 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  185 (279)
                      ++++|.+. .++..+..+++|++|++++|.+. .++. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus        84 ~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  161 (306)
T 2z66_A           84 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS  161 (306)
T ss_dssp             ECCSCSEE-EEEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred             ECCCCccc-cChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence            99999887 45666778889999999998887 4443 455788889999998888887777778888888899998888


Q ss_pred             ccc-cCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcc
Q 041953          186 FSG-VVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPS  264 (279)
Q Consensus       186 ~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  264 (279)
                      +.+ ..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+.+..|.
T Consensus       162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  241 (306)
T 2z66_A          162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ  241 (306)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred             cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence            875 4677788888888888888888877778888888888888888888877666788888888888888888888887


Q ss_pred             cccccc
Q 041953          265 SIYKLL  270 (279)
Q Consensus       265 ~~~~~~  270 (279)
                      .+..++
T Consensus       242 ~~~~~~  247 (306)
T 2z66_A          242 ELQHFP  247 (306)
T ss_dssp             SCCCCC
T ss_pred             HHHhhh
Confidence            777664

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.96  E-value=1e-28  Score=201.71  Aligned_cols=219  Identities=24%  Similarity=0.304  Sum_probs=191.8

Q ss_pred             CCCcceeeeeeCCCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccC
Q 041953           38 TPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAF  117 (279)
Q Consensus        38 ~~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~  117 (279)
                      .+.|.|.|..|.... ..+.++++++.++ .+|..+.  +++++|++++|.+.+..+..|..+++|++|++++|.+....
T Consensus         2 ~~~C~~~~~~C~c~~-~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~   77 (270)
T 2o6q_A            2 EALCKKDGGVCSCNN-NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP   77 (270)
T ss_dssp             CCCBGGGTCSBEEET-TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred             CccCCCCCCCCEeCC-CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence            477999998886432 4678999999998 4665554  68999999999999766678999999999999999998665


Q ss_pred             CccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCC
Q 041953          118 PSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNL  197 (279)
Q Consensus       118 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~  197 (279)
                      +..+..+++|++|++++|.+. .++...|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+
T Consensus        78 ~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  156 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL  156 (270)
T ss_dssp             TTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             hhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCC
Confidence            566788999999999999998 7887777899999999999999997777788999999999999999997766778899


Q ss_pred             CCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCccccc
Q 041953          198 TKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGI  261 (279)
Q Consensus       198 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~  261 (279)
                      ++|+.|++++|.++...+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++...
T Consensus       157 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            9999999999999977777789999999999999999977777899999999999999998654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=1.5e-28  Score=202.14  Aligned_cols=211  Identities=21%  Similarity=0.196  Sum_probs=189.6

Q ss_pred             CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCc-ccccCCccCCCCCCCcEE
Q 041953           52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQ-LSGAFPSFAFNTSSLQYL  130 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L  130 (279)
                      .+++++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|. +....+..+..+++|++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            4589999999999998888889999999999999999997778899999999999999997 776667889999999999


Q ss_pred             EeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccc
Q 041953          131 DFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRL  210 (279)
Q Consensus       131 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~  210 (279)
                      ++++|.+. .++...+.++++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus       111 ~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          111 HLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             ECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence            99999998 66556668899999999999999866667789999999999999999976677788999999999999999


Q ss_pred             ccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCc
Q 041953          211 QGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITP  263 (279)
Q Consensus       211 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  263 (279)
                      ++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++....+
T Consensus       190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            98889999999999999999999997777789999999999999999876433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=2.4e-28  Score=213.63  Aligned_cols=229  Identities=19%  Similarity=0.202  Sum_probs=197.4

Q ss_pred             eeeeeeCCC---------CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcc
Q 041953           43 WTGVTCDVH---------SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQL  113 (279)
Q Consensus        43 ~~~~~~~~~---------~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~  113 (279)
                      |..+.|...         .+++++|++++|.++++.+..|.++++|+.|++++|.+.+..+..|..+++|++|++++|.+
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  135 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL  135 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence            456677532         25799999999999988899999999999999999999977788999999999999999999


Q ss_pred             cccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecc-cccccCCccCCCCccCcEEeccCCcccccCCc
Q 041953          114 SGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQN-MFHGGIPSALSNCAYLQRLGLSSNDFSGVVPK  192 (279)
Q Consensus       114 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  192 (279)
                      ....+..+..+++|++|++++|.+. .++...|.++++|++|++++| .+....+..+..+++|+.|++++|.+.+. | 
T Consensus       136 ~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-  212 (452)
T 3zyi_A          136 TVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-  212 (452)
T ss_dssp             SBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-
T ss_pred             CccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-
Confidence            9666677889999999999999998 888877889999999999984 45434445688899999999999998843 3 


Q ss_pred             ccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccccccc
Q 041953          193 EICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFS  272 (279)
Q Consensus       193 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  272 (279)
                      .+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+.++++|+.|++++|.+++.++..+..++++
T Consensus       213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  292 (452)
T 3zyi_A          213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL  292 (452)
T ss_dssp             CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred             cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence            47788899999999999988888889999999999999999988888889999999999999999999888887777655


Q ss_pred             cc
Q 041953          273 IK  274 (279)
Q Consensus       273 ~~  274 (279)
                      ..
T Consensus       293 ~~  294 (452)
T 3zyi_A          293 VE  294 (452)
T ss_dssp             CE
T ss_pred             CE
Confidence            43

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=7.2e-28  Score=209.92  Aligned_cols=229  Identities=22%  Similarity=0.223  Sum_probs=195.2

Q ss_pred             eeeeeeCCC---------CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcc
Q 041953           43 WTGVTCDVH---------SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQL  113 (279)
Q Consensus        43 ~~~~~~~~~---------~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~  113 (279)
                      +..+.|...         .+.++.|++++|.+....+..|.++++|++|++++|.+.+..+..|..+++|++|++++|++
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l  124 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL  124 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence            456677531         34689999999999988889999999999999999999877778899999999999999999


Q ss_pred             cccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecc-cccccCCccCCCCccCcEEeccCCcccccCCc
Q 041953          114 SGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQN-MFHGGIPSALSNCAYLQRLGLSSNDFSGVVPK  192 (279)
Q Consensus       114 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  192 (279)
                      ....+..+..+++|++|++++|.+. .++...|..+++|++|++++| .+....+..+..+++|++|++++|.+. .+| 
T Consensus       125 ~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-  201 (440)
T 3zyj_A          125 TTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-  201 (440)
T ss_dssp             SSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-
T ss_pred             CeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-
Confidence            9666667899999999999999997 788777789999999999984 444344457888999999999999988 344 


Q ss_pred             ccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccccccc
Q 041953          193 EICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFS  272 (279)
Q Consensus       193 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  272 (279)
                      .+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..|.++++|+.|++++|.+++.++..+..++.+
T Consensus       202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  281 (440)
T 3zyj_A          202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL  281 (440)
T ss_dssp             CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred             ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence            47788899999999999988888889999999999999999988888889999999999999999999888887777655


Q ss_pred             cc
Q 041953          273 IK  274 (279)
Q Consensus       273 ~~  274 (279)
                      ..
T Consensus       282 ~~  283 (440)
T 3zyj_A          282 ER  283 (440)
T ss_dssp             CE
T ss_pred             CE
Confidence            43

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=8.2e-28  Score=210.30  Aligned_cols=134  Identities=19%  Similarity=0.176  Sum_probs=72.8

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCC-CccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSI-PSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD  131 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  131 (279)
                      +++++|++++|.+++..|..|.++++|++|++++|.+.+.+ +..|..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            45667777777666665666666666666666666654332 34556666666666666666555555555566666666


Q ss_pred             eeccccccccCh-hhhcCCCCCcEEEeecccccccCCcc-CCCCccCcEEeccCCcc
Q 041953          132 FGFNTLSGEIPA-NICSNLPFLEYLALSQNMFHGGIPSA-LSNCAYLQRLGLSSNDF  186 (279)
Q Consensus       132 l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~  186 (279)
                      +++|.+.+..+. ..+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            666555432222 12344555555555555544333332 34444444444444433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=7.1e-28  Score=210.72  Aligned_cols=122  Identities=25%  Similarity=0.248  Sum_probs=74.8

Q ss_pred             CcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccC
Q 041953          152 LEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSE  231 (279)
Q Consensus       152 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  231 (279)
                      |++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++
T Consensus       277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  356 (455)
T 3v47_A          277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY  356 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred             ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence            33344444444333444555566666666666666655566666666666666666666655556666666666777766


Q ss_pred             CcCcccCCccccCCCCCCeEEccCCcccccCccccccccccc
Q 041953          232 NELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSI  273 (279)
Q Consensus       232 n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~  273 (279)
                      |++++..|..+.++++|++|++++|.+++.++..+..++++.
T Consensus       357 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  398 (455)
T 3v47_A          357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ  398 (455)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CcccccChhhccccccccEEECCCCccccCCHhHhccCCccc
Confidence            666666666666666777777777776666665555554443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=4.1e-29  Score=211.70  Aligned_cols=202  Identities=20%  Similarity=0.248  Sum_probs=145.9

Q ss_pred             CCCCCCCCCcceeeeeeCC-----------CCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCC
Q 041953           32 KNWNTSTPVCNWTGVTCDV-----------HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTT  100 (279)
Q Consensus        32 ~~w~~~~~~c~~~~~~~~~-----------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~  100 (279)
                      ..|.+....|.|.++ |+.           -.+++++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+
T Consensus        21 ~~~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (353)
T 2z80_A           21 ESSNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL   99 (353)
T ss_dssp             ------CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             cCCCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCC
Confidence            456666788888876 531           12478999999999987777789999999999999999987777788899


Q ss_pred             CCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccCh-hhhcCCCCCcEEEeecc-cccccCCccCCCCccCcE
Q 041953          101 YTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPA-NICSNLPFLEYLALSQN-MFHGGIPSALSNCAYLQR  178 (279)
Q Consensus       101 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~  178 (279)
                      ++|++|++++|.+....+..+..+++|++|++++|++. .++. ..+..+++|++|++++| .+....+..+..+++|++
T Consensus       100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  178 (353)
T 2z80_A          100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE  178 (353)
T ss_dssp             TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred             CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence            99999999999988544444788899999999999887 6666 55678889999999888 466555677888888888


Q ss_pred             EeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCc
Q 041953          179 LGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ  235 (279)
Q Consensus       179 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~  235 (279)
                      |++++|.+.+..|..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++
T Consensus       179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  235 (353)
T 2z80_A          179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD  235 (353)
T ss_dssp             EEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred             EECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence            888888888777777777777777777766654222112222344444444444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=7.8e-28  Score=201.73  Aligned_cols=208  Identities=20%  Similarity=0.262  Sum_probs=189.6

Q ss_pred             CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCC--------
Q 041953           52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFN--------  123 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--------  123 (279)
                      ++++++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|++.+.+|..+..        
T Consensus       103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~  180 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ  180 (328)
T ss_dssp             GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred             CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence            568999999999999 78999999999999999999998 78999999999999999999888788877654        


Q ss_pred             -CCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccE
Q 041953          124 -TSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKG  202 (279)
Q Consensus       124 -l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~  202 (279)
                       +++|++|++++|.+. .+|..+ ..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|+.
T Consensus       181 ~l~~L~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~  257 (328)
T 4fcg_A          181 GLVNLQSLRLEWTGIR-SLPASI-ANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR  257 (328)
T ss_dssp             ESTTCCEEEEEEECCC-CCCGGG-GGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred             cCCCCCEEECcCCCcC-cchHhh-cCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence             999999999999998 888775 88999999999999998 56778999999999999999999899999999999999


Q ss_pred             EEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcc
Q 041953          203 LYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPS  264 (279)
Q Consensus       203 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  264 (279)
                      |++++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+.++++|+.+++..+.+......
T Consensus       258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~~~  319 (328)
T 4fcg_A          258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH  319 (328)
T ss_dssp             EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC----
T ss_pred             EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHhhh
Confidence            99999999889999999999999999999999999999999999999999998877665443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=3.1e-27  Score=194.34  Aligned_cols=215  Identities=21%  Similarity=0.216  Sum_probs=190.7

Q ss_pred             EEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeecc
Q 041953           56 TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFN  135 (279)
Q Consensus        56 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  135 (279)
                      +.++.++++++ .+|..+  .++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            57788888887 455444  478999999999999777778999999999999999999777889999999999999999


Q ss_pred             c-cccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccccccc
Q 041953          136 T-LSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEI  214 (279)
Q Consensus       136 ~-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~  214 (279)
                      . +. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..
T Consensus        91 ~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             TTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence            7 65 776666689999999999999999777888999999999999999999777777899999999999999998776


Q ss_pred             CccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccccccccc
Q 041953          215 PRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK  274 (279)
Q Consensus       215 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  274 (279)
                      +..+..+++|+.|++++|++++..|..+.++++|+.|++++|.+++.++..+..++.+..
T Consensus       170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  229 (285)
T 1ozn_A          170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY  229 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred             HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCE
Confidence            677999999999999999999888999999999999999999999998888888766653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=5.6e-27  Score=196.94  Aligned_cols=227  Identities=22%  Similarity=0.266  Sum_probs=181.3

Q ss_pred             CCCcceeeeeeCCC---------CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEc
Q 041953           38 TPVCNWTGVTCDVH---------SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSF  108 (279)
Q Consensus        38 ~~~c~~~~~~~~~~---------~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l  108 (279)
                      ...|.|..+.|...         .+++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|..+++|++|++
T Consensus        30 ~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           30 GCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             SCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             CCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            34577888888532         357999999999999888889999999999999999999777889999999999999


Q ss_pred             ccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccc--cCCccCCCC-------------
Q 041953          109 RKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHG--GIPSALSNC-------------  173 (279)
Q Consensus       109 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~l~~l-------------  173 (279)
                      ++|.+. .+|..+.  ++|++|++++|.+. .++...+..+++|++|++++|.+..  ..+..+..+             
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCS
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCC
Confidence            999988 5565554  78999999999887 7777767888899999998887752  333333332             


Q ss_pred             -------ccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCC
Q 041953          174 -------AYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLT  246 (279)
Q Consensus       174 -------~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~  246 (279)
                             ++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..++
T Consensus       186 ~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~  264 (332)
T 2ft3_A          186 GIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK  264 (332)
T ss_dssp             SCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCT
T ss_pred             ccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCc
Confidence                   35666777777777666677778888888888888888766667888888888888888887 6677788888


Q ss_pred             CCCeEEccCCcccccCccccccc
Q 041953          247 GLGILQLSDNFLTGITPSSIYKL  269 (279)
Q Consensus       247 ~L~~L~l~~n~l~~~~~~~~~~~  269 (279)
                      +|+.|++++|++++..+..|+..
T Consensus       265 ~L~~L~l~~N~l~~~~~~~~~~~  287 (332)
T 2ft3_A          265 LLQVVYLHTNNITKVGVNDFCPV  287 (332)
T ss_dssp             TCCEEECCSSCCCBCCTTSSSCS
T ss_pred             cCCEEECCCCCCCccChhHcccc
Confidence            88888888888888877777654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=1.2e-26  Score=194.75  Aligned_cols=227  Identities=21%  Similarity=0.252  Sum_probs=170.0

Q ss_pred             CCCcceeeeeeCC---------CCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEc
Q 041953           38 TPVCNWTGVTCDV---------HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSF  108 (279)
Q Consensus        38 ~~~c~~~~~~~~~---------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l  108 (279)
                      ...|.|..+.|..         -.+.+++|++++|.+++..+..|.++++|++|++++|.+.+..|..|..+++|++|++
T Consensus        28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            3567788888753         2357899999999999877778999999999999999999777889999999999999


Q ss_pred             ccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccc--cCCccCCCC-------------
Q 041953          109 RKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHG--GIPSALSNC-------------  173 (279)
Q Consensus       109 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~l~~l-------------  173 (279)
                      ++|.+. .+|..+.  ++|++|++++|.+. .++...+.++++|++|++++|.+..  ..+..+..+             
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            999987 4555443  57777777777776 5555555666666666666665532  333334444             


Q ss_pred             --------ccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCC
Q 041953          174 --------AYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNL  245 (279)
Q Consensus       174 --------~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~  245 (279)
                              ++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+
T Consensus       184 ~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l  262 (330)
T 1xku_A          184 TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH  262 (330)
T ss_dssp             CSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred             ccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccC
Confidence                    34555666666666555667777788888888888887666667777888888888888887 667778888


Q ss_pred             CCCCeEEccCCcccccCccccccc
Q 041953          246 TGLGILQLSDNFLTGITPSSIYKL  269 (279)
Q Consensus       246 ~~L~~L~l~~n~l~~~~~~~~~~~  269 (279)
                      ++|++|++++|+++++.+..|+..
T Consensus       263 ~~L~~L~l~~N~i~~~~~~~f~~~  286 (330)
T 1xku_A          263 KYIQVVYLHNNNISAIGSNDFCPP  286 (330)
T ss_dssp             SSCCEEECCSSCCCCCCTTSSSCS
T ss_pred             CCcCEEECCCCcCCccChhhcCCc
Confidence            888888888888888877777544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=6.1e-27  Score=204.03  Aligned_cols=208  Identities=25%  Similarity=0.251  Sum_probs=190.1

Q ss_pred             CCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcE
Q 041953           50 VHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQY  129 (279)
Q Consensus        50 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  129 (279)
                      ..+++|++|++++|.+.++.+..|.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++
T Consensus        85 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~  164 (440)
T 3zyj_A           85 KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR  164 (440)
T ss_dssp             SSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             hCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCE
Confidence            45678999999999999888899999999999999999999666668999999999999999999776778999999999


Q ss_pred             EEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcc
Q 041953          130 LDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNR  209 (279)
Q Consensus       130 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~  209 (279)
                      |++++|.....++...|.++++|++|++++|.++ .+| .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.
T Consensus       165 L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  242 (440)
T 3zyj_A          165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ  242 (440)
T ss_dssp             EECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc
Confidence            9999966555888888899999999999999998 555 58889999999999999998889999999999999999999


Q ss_pred             cccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCccc
Q 041953          210 LQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLT  259 (279)
Q Consensus       210 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~  259 (279)
                      +++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.
T Consensus       243 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          243 IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            99888899999999999999999999888888999999999999999875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.95  E-value=5.3e-27  Score=206.42  Aligned_cols=224  Identities=21%  Similarity=0.154  Sum_probs=136.3

Q ss_pred             CCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEE
Q 041953           51 HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYL  130 (279)
Q Consensus        51 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  130 (279)
                      .+++|++|++++|.+++..|..|.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|
T Consensus        54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  133 (477)
T 2id5_A           54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL  133 (477)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence            44566677777766666666666666666666666666664444445566666666666666554444445555555555


Q ss_pred             Eeecccccc-----------------------ccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccC----
Q 041953          131 DFGFNTLSG-----------------------EIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSS----  183 (279)
Q Consensus       131 ~l~~n~~~~-----------------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~----  183 (279)
                      ++++|.+..                       .++...+.++++|+.|++++|.+.+..+..+..+++|+.|++++    
T Consensus       134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~  213 (477)
T 2id5_A          134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL  213 (477)
T ss_dssp             EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred             ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc
Confidence            555554431                       34444344555555555555554433333444444444444433    


Q ss_pred             --------------------CcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCcccc
Q 041953          184 --------------------NDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWG  243 (279)
Q Consensus       184 --------------------n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  243 (279)
                                          |.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..|..+.
T Consensus       214 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  293 (477)
T 2id5_A          214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR  293 (477)
T ss_dssp             CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBT
T ss_pred             cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhc
Confidence                                333322223455666777777777777766666677777888888888888777777788


Q ss_pred             CCCCCCeEEccCCcccccCcccccccccccc
Q 041953          244 NLTGLGILQLSDNFLTGITPSSIYKLLFSIK  274 (279)
Q Consensus       244 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  274 (279)
                      ++++|+.|++++|.++++.+..|..++++..
T Consensus       294 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  324 (477)
T 2id5_A          294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLET  324 (477)
T ss_dssp             TCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred             CcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence            8888888888888888877777776655543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.95  E-value=4.5e-27  Score=206.93  Aligned_cols=220  Identities=19%  Similarity=0.189  Sum_probs=163.7

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF  132 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  132 (279)
                      +.++.|++++|.+++..+..|.++++|++|++++|.+.+..|..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            57899999999999888899999999999999999999878899999999999999999999665667889999999999


Q ss_pred             eccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccccc
Q 041953          133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQG  212 (279)
Q Consensus       133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~  212 (279)
                      ++|.+. .++...|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus       112 s~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          112 SENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             TTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred             CCCccc-cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence            999998 5555556889999999999998887777778888888888888887765444445555555555555544433


Q ss_pred             ccCc------------------------------------------------cCCCCCCCCEEeccCCcCcccCCccccC
Q 041953          213 EIPR------------------------------------------------ESGNLAELELMSLSENELQGAIPREWGN  244 (279)
Q Consensus       213 ~~~~------------------------------------------------~~~~~~~L~~L~l~~n~i~~~~~~~~~~  244 (279)
                      ..+.                                                .+..+++|+.|++++|++++..+..+.+
T Consensus       191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (477)
T 2id5_A          191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE  270 (477)
T ss_dssp             ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred             eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence            2222                                                2344455555555555555454555556


Q ss_pred             CCCCCeEEccCCcccccCccccccccccc
Q 041953          245 LTGLGILQLSDNFLTGITPSSIYKLLFSI  273 (279)
Q Consensus       245 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~  273 (279)
                      +++|+.|++++|.+++..|..|..++++.
T Consensus       271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  299 (477)
T 2id5_A          271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLR  299 (477)
T ss_dssp             CTTCCEEECCSSCCSEECTTTBTTCTTCC
T ss_pred             cccCCEEECCCCccceECHHHhcCcccCC
Confidence            66666666666666666666665554443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=9.8e-27  Score=203.41  Aligned_cols=209  Identities=24%  Similarity=0.225  Sum_probs=190.0

Q ss_pred             CCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcE
Q 041953           50 VHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQY  129 (279)
Q Consensus        50 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  129 (279)
                      ..+++|++|++++|.++++.+..|.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++
T Consensus        96 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  175 (452)
T 3zyi_A           96 RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR  175 (452)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccE
Confidence            35678999999999999888899999999999999999999666677899999999999999999766678999999999


Q ss_pred             EEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcc
Q 041953          130 LDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNR  209 (279)
Q Consensus       130 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~  209 (279)
                      |++++|...+.++...|.++++|++|++++|.++ .+| .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.
T Consensus       176 L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  253 (452)
T 3zyi_A          176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ  253 (452)
T ss_dssp             EECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred             EeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence            9999965555888888899999999999999998 444 58889999999999999998889999999999999999999


Q ss_pred             cccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccc
Q 041953          210 LQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTG  260 (279)
Q Consensus       210 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~  260 (279)
                      +++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.-
T Consensus       254 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            998888999999999999999999997777888999999999999998753

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.95  E-value=6.4e-27  Score=200.81  Aligned_cols=134  Identities=22%  Similarity=0.206  Sum_probs=69.7

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF  132 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  132 (279)
                      .+++.++++++.++...+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            34555555555555433333455555555555555555444445555555555555555555444444555555555555


Q ss_pred             eccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCccc
Q 041953          133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFS  187 (279)
Q Consensus       133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  187 (279)
                      ++|.+. .+|...|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus       125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence            555554 455444455555555555555555444444555555555555555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=7.1e-27  Score=211.00  Aligned_cols=205  Identities=22%  Similarity=0.194  Sum_probs=111.6

Q ss_pred             eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEee
Q 041953           54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFG  133 (279)
Q Consensus        54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  133 (279)
                      .++.++++++.++...+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  131 (597)
T 3oja_B           52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  131 (597)
T ss_dssp             CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence            44555566655554444445555666666666666554444455556666666666666555444455555666666666


Q ss_pred             ccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccC-----------------------
Q 041953          134 FNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVV-----------------------  190 (279)
Q Consensus       134 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-----------------------  190 (279)
                      +|.+. .+|...|.++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..                       
T Consensus       132 ~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~  210 (597)
T 3oja_B          132 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP  210 (597)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred             CCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCC
Confidence            66555 555554455556666666665555444445555555555555555444221                       


Q ss_pred             ------------------------------------CcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcC
Q 041953          191 ------------------------------------PKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENEL  234 (279)
Q Consensus       191 ------------------------------------~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i  234 (279)
                                                          +..+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+
T Consensus       211 ~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  290 (597)
T 3oja_B          211 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL  290 (597)
T ss_dssp             TTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC
T ss_pred             chhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC
Confidence                                                12233445555555555555555555555555555555555555


Q ss_pred             cccCCccccCCCCCCeEEccCCcccc
Q 041953          235 QGAIPREWGNLTGLGILQLSDNFLTG  260 (279)
Q Consensus       235 ~~~~~~~~~~~~~L~~L~l~~n~l~~  260 (279)
                      ++ +|..+..+++|+.|++++|.+++
T Consensus       291 ~~-l~~~~~~l~~L~~L~Ls~N~l~~  315 (597)
T 3oja_B          291 VA-LNLYGQPIPTLKVLDLSHNHLLH  315 (597)
T ss_dssp             CE-EECSSSCCTTCCEEECCSSCCCC
T ss_pred             CC-CCcccccCCCCcEEECCCCCCCc
Confidence            53 33344445555555555555554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.1e-26  Score=192.87  Aligned_cols=211  Identities=21%  Similarity=0.235  Sum_probs=186.5

Q ss_pred             CCCCeEEEEEcCCCCcccc--CcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCC-ccCCCCCC
Q 041953           50 VHSHRVTVLNISRLNLTGT--IPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFP-SFAFNTSS  126 (279)
Q Consensus        50 ~~~~~l~~L~l~~~~l~~~--~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~  126 (279)
                      ...++|++|++++|.++..  .+..+..+++|++|++++|.+. .++..+..+++|++|++++|.+.+..+ ..+..+++
T Consensus        49 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  127 (306)
T 2z66_A           49 DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN  127 (306)
T ss_dssp             TTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT
T ss_pred             hccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccC
Confidence            3567899999999998743  3667778999999999999998 677789999999999999999985544 57889999


Q ss_pred             CcEEEeeccccccccChhhhcCCCCCcEEEeecccccc-cCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEc
Q 041953          127 LQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHG-GIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYL  205 (279)
Q Consensus       127 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l  205 (279)
                      |++|++++|.+. ..+...+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus       128 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  206 (306)
T 2z66_A          128 LIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  206 (306)
T ss_dssp             CCEEECTTSCCE-ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEEECCCCcCC-ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence            999999999997 5555556889999999999999986 57888999999999999999999888889999999999999


Q ss_pred             cCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCC-CCCeEEccCCcccccC
Q 041953          206 GGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLT-GLGILQLSDNFLTGIT  262 (279)
Q Consensus       206 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~n~l~~~~  262 (279)
                      ++|.+++..+..+..+++|+.|++++|++++..+..+..++ +|+.|++++|++...-
T Consensus       207 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             TTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred             CCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence            99999877777889999999999999999988898999985 9999999999998753

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.94  E-value=4.3e-26  Score=191.41  Aligned_cols=215  Identities=21%  Similarity=0.276  Sum_probs=162.7

Q ss_pred             CCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccC------------
Q 041953           50 VHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAF------------  117 (279)
Q Consensus        50 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~------------  117 (279)
                      ..++++++|++++|.+++..|..|..+++|++|++++|.+. .+|..+.  ++|++|++++|.+....            
T Consensus        73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  149 (330)
T 1xku_A           73 KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIV  149 (330)
T ss_dssp             TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCE
T ss_pred             ccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccE
Confidence            35678999999999998887889999999999999998887 4443332  45555555555554333            


Q ss_pred             --------------CccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccC
Q 041953          118 --------------PSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSS  183 (279)
Q Consensus       118 --------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  183 (279)
                                    +..+..+++|++|++++|.+. .+|...   .++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus       150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  225 (330)
T 1xku_A          150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF  225 (330)
T ss_dssp             EECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred             EECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence                          334444555555555555554 444433   26677777777777766678889999999999999


Q ss_pred             CcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccC------CCCCCeEEccCCc
Q 041953          184 NDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGN------LTGLGILQLSDNF  257 (279)
Q Consensus       184 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~------~~~L~~L~l~~n~  257 (279)
                      |.+.+..+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..|..      .+.++.+++++|+
T Consensus       226 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          226 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             SCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             CcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence            9999877778899999999999999998 78888999999999999999999776666643      4789999999999


Q ss_pred             ccc--cCcccccccccc
Q 041953          258 LTG--ITPSSIYKLLFS  272 (279)
Q Consensus       258 l~~--~~~~~~~~~~~~  272 (279)
                      +..  +.|..|..+..+
T Consensus       305 ~~~~~i~~~~f~~~~~l  321 (330)
T 1xku_A          305 VQYWEIQPSTFRCVYVR  321 (330)
T ss_dssp             SCGGGSCGGGGTTCCCG
T ss_pred             ccccccCccccccccce
Confidence            875  556666655443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=1.3e-26  Score=189.71  Aligned_cols=209  Identities=22%  Similarity=0.160  Sum_probs=182.5

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF  132 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  132 (279)
                      +.+++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            46999999999999877778999999999999999998767778999999999999999999777788999999999999


Q ss_pred             eccccccccChhhhcCCCCCcEEEeeccccccc-CCccCCCCccCcEEeccCCcccccCCcccCCCCCcc----EEEccC
Q 041953          133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGG-IPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLK----GLYLGG  207 (279)
Q Consensus       133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~----~L~l~~  207 (279)
                      ++|.+. .++...+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+.+..+..+..+.+|+    .+++++
T Consensus       108 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~  186 (276)
T 2z62_A          108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (276)
T ss_dssp             TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred             CCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence            999997 66665568899999999999999853 588999999999999999999877666776666666    899999


Q ss_pred             cccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCc
Q 041953          208 NRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITP  263 (279)
Q Consensus       208 n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  263 (279)
                      |.+++..+..+. ..+|+.|++++|++++..+..+..+++|+.|++++|++...-+
T Consensus       187 n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          187 NPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             SCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             CcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            999865555444 4589999999999997777778999999999999999997654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.94  E-value=1.9e-26  Score=208.56  Aligned_cols=219  Identities=20%  Similarity=0.185  Sum_probs=134.5

Q ss_pred             CCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCc-cccCCCCCcEEEcccCcccccC--CccCCCCCCC
Q 041953           51 HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPS-AIFTTYTLKYVSFRKNQLSGAF--PSFAFNTSSL  127 (279)
Q Consensus        51 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-~~~~~~~L~~L~l~~n~~~~~~--~~~~~~l~~L  127 (279)
                      .++++++|++++|.+++..|..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+.+..  +..+..+++|
T Consensus       299 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L  378 (606)
T 3t6q_A          299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL  378 (606)
T ss_dssp             SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTC
T ss_pred             ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCC
Confidence            456788888888888877677777788888888888777644443 3667777777777777766443  5556666777


Q ss_pred             cEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCc-cCCCCccCcEEeccCCcccccCCcccCCCCCccEEEcc
Q 041953          128 QYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPS-ALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLG  206 (279)
Q Consensus       128 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~  206 (279)
                      ++|++++|.+. .++...+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+.+..+..+..+++|+.|+++
T Consensus       379 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  457 (606)
T 3t6q_A          379 QSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ  457 (606)
T ss_dssp             CEEECCSCSCE-EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECT
T ss_pred             CEEECCCCcCC-cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECC
Confidence            77777777665 33333345666666666666666544332 25556666666666666655555555555666666666


Q ss_pred             Ccccccc---cCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccccc
Q 041953          207 GNRLQGE---IPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL  270 (279)
Q Consensus       207 ~n~~~~~---~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  270 (279)
                      +|.+++.   .+..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..|..+..++
T Consensus       458 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  524 (606)
T 3t6q_A          458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK  524 (606)
T ss_dssp             TCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred             CCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccc
Confidence            6655431   123345555555555555555555555555555555555555555555555555444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.94  E-value=9.7e-26  Score=203.96  Aligned_cols=219  Identities=23%  Similarity=0.205  Sum_probs=133.9

Q ss_pred             eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCc-cCCCCCCCcEEEe
Q 041953           54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPS-FAFNTSSLQYLDF  132 (279)
Q Consensus        54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l  132 (279)
                      ++++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++. .+..+++|++|++
T Consensus       279 ~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  357 (606)
T 3t6q_A          279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL  357 (606)
T ss_dssp             TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred             CCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence            4444444444444 3344444444455555554444433344444455555555555544433332 2555566666666


Q ss_pred             eccccccccC--hhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCc-ccCCCCCccEEEccCcc
Q 041953          133 GFNTLSGEIP--ANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPK-EICNLTKLKGLYLGGNR  209 (279)
Q Consensus       133 ~~n~~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~n~  209 (279)
                      ++|.+. ...  ...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.
T Consensus       358 ~~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  436 (606)
T 3t6q_A          358 SHDDIE-TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL  436 (606)
T ss_dssp             CSSCCC-EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred             CCCccc-cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence            666654 221  22235666677777766666655666666777777777777776655443 36667777777777777


Q ss_pred             cccccCccCCCCCCCCEEeccCCcCcc---cCCccccCCCCCCeEEccCCcccccCcccccccccccc
Q 041953          210 LQGEIPRESGNLAELELMSLSENELQG---AIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK  274 (279)
Q Consensus       210 ~~~~~~~~~~~~~~L~~L~l~~n~i~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  274 (279)
                      +.+..|..+..+++|++|++++|++.+   ..+..+..+++|+.|++++|.+++.+|..+..++.+..
T Consensus       437 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  504 (606)
T 3t6q_A          437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH  504 (606)
T ss_dssp             CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence            776667777777888888888887765   22345777888888888888888888877777766553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=1.1e-25  Score=193.21  Aligned_cols=112  Identities=21%  Similarity=0.234  Sum_probs=83.7

Q ss_pred             CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953           52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD  131 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  131 (279)
                      .+++++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus        68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  147 (390)
T 3o6n_A           68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  147 (390)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence            45788888888888776677788888888888888888766667777888888888888887744334457788888888


Q ss_pred             eeccccccccChhhhcCCCCCcEEEeecccccc
Q 041953          132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHG  164 (279)
Q Consensus       132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  164 (279)
                      +++|.+. .++...+..+++|++|++++|.+++
T Consensus       148 L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          148 MSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             CCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             CCCCccC-ccChhhccCCCCCCEEECCCCcCCc
Confidence            8888876 5555555777777777777776653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.94  E-value=7.9e-26  Score=184.73  Aligned_cols=209  Identities=22%  Similarity=0.228  Sum_probs=183.3

Q ss_pred             CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953           52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD  131 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  131 (279)
                      .++++.|+++++.+.. + ..+..+++|++|++++|.+.+  ...+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            4579999999999873 2 358889999999999999974  34788999999999999999977777788999999999


Q ss_pred             eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc
Q 041953          132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ  211 (279)
Q Consensus       132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~  211 (279)
                      +++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus       116 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          116 LVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            9999998 777776789999999999999999666667889999999999999999777777889999999999999999


Q ss_pred             cccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccccccc
Q 041953          212 GEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFS  272 (279)
Q Consensus       212 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  272 (279)
                      +..+..+..+++|+.|++++|++.+       .++.|+.+++..|.++|.+|.+++.+...
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~~  248 (272)
T 3rfs_A          195 SVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAPD  248 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred             ccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence            8777788999999999999998763       36688999999999999999998877543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.6e-26  Score=195.76  Aligned_cols=214  Identities=19%  Similarity=0.157  Sum_probs=178.2

Q ss_pred             CCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCC-ccCCCCCCCc
Q 041953           50 VHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFP-SFAFNTSSLQ  128 (279)
Q Consensus        50 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~  128 (279)
                      ...+++++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+....+ ..+..+++|+
T Consensus        73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~  152 (353)
T 2z80_A           73 QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ  152 (353)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred             ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence            456799999999999998888899999999999999999985554558899999999999999984333 3788999999


Q ss_pred             EEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCc
Q 041953          129 YLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGN  208 (279)
Q Consensus       129 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n  208 (279)
                      +|++++|.....++...+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|
T Consensus       153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  232 (353)
T 2z80_A          153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT  232 (353)
T ss_dssp             EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred             EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence            99999995333776666689999999999999999888899999999999999999987443333455789999999999


Q ss_pred             cccccc-------------------------------CccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCc
Q 041953          209 RLQGEI-------------------------------PRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNF  257 (279)
Q Consensus       209 ~~~~~~-------------------------------~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~  257 (279)
                      .+++..                               |..+..+++|+.|++++|+++...+..+..+++|+.|++++|+
T Consensus       233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence            887532                               3345678899999999999984444446899999999999999


Q ss_pred             ccccCc
Q 041953          258 LTGITP  263 (279)
Q Consensus       258 l~~~~~  263 (279)
                      +.+..|
T Consensus       313 ~~~~~~  318 (353)
T 2z80_A          313 WDCSCP  318 (353)
T ss_dssp             BCCCHH
T ss_pred             ccCcCC
Confidence            988754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=2.2e-25  Score=201.25  Aligned_cols=216  Identities=22%  Similarity=0.258  Sum_probs=177.3

Q ss_pred             CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953           52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD  131 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  131 (279)
                      +++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  153 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  153 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence            35789999999999888888899999999999999999877777788899999999999988855445568888999999


Q ss_pred             eeccccccccChhhhcCCCCCcEEEeecccccccC---------------------------------------------
Q 041953          132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGI---------------------------------------------  166 (279)
Q Consensus       132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~---------------------------------------------  166 (279)
                      +++|.+. .++...+..+++|++|++++|.+.+..                                             
T Consensus       154 Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~  232 (597)
T 3oja_B          154 MSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV  232 (597)
T ss_dssp             CCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCS
T ss_pred             eeCCcCC-CCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCC
Confidence            9999887 555555577888888888877665321                                             


Q ss_pred             --------------CccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCC
Q 041953          167 --------------PSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSEN  232 (279)
Q Consensus       167 --------------~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  232 (279)
                                    +..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++ +|..+..+++|+.|+|++|
T Consensus       233 ~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N  311 (597)
T 3oja_B          233 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN  311 (597)
T ss_dssp             CCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred             CCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCC
Confidence                          1234566789999999999998889999999999999999999985 5667778999999999999


Q ss_pred             cCcccCCccccCCCCCCeEEccCCcccccCcccccccc
Q 041953          233 ELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL  270 (279)
Q Consensus       233 ~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  270 (279)
                      .+. .+|..+..+++|+.|++++|.+++.....+..+.
T Consensus       312 ~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~  348 (597)
T 3oja_B          312 HLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK  348 (597)
T ss_dssp             CCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCS
T ss_pred             CCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCC
Confidence            998 6777788899999999999999888655554443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.7e-26  Score=192.43  Aligned_cols=204  Identities=24%  Similarity=0.203  Sum_probs=155.7

Q ss_pred             CCeEEEEEcCCCCccccCcccc--cCCCCCCEEEccCCcccCCCCccccCC-----CCCcEEEcccCcccccCCccCCCC
Q 041953           52 SHRVTVLNISRLNLTGTIPSQL--GNLSSLQSLNLSCNRLSGSIPSAIFTT-----YTLKYVSFRKNQLSGAFPSFAFNT  124 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~~~~l  124 (279)
                      .+++++|++++|.+++..|..+  ..+++|++|++++|.+.+. |..+..+     ++|++|++++|.+.+..+..+..+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            5678888888888887777765  7888888888888888855 7767666     788888888888887766788888


Q ss_pred             CCCcEEEeecccccccc--C-hhhhcCCCCCcEEEeecccccc---cCCccCCCCccCcEEeccCCcccccCC-cccCCC
Q 041953          125 SSLQYLDFGFNTLSGEI--P-ANICSNLPFLEYLALSQNMFHG---GIPSALSNCAYLQRLGLSSNDFSGVVP-KEICNL  197 (279)
Q Consensus       125 ~~L~~L~l~~n~~~~~~--~-~~~~~~~~~L~~L~l~~n~l~~---~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~  197 (279)
                      ++|++|++++|++.+.+  + ...+..+++|++|++++|.+++   .....+..+++|++|++++|.+.+..| ..+..+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            88888888888865432  2 2223678888888888888762   111234566788888888888886554 445567


Q ss_pred             CCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCccccc
Q 041953          198 TKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGI  261 (279)
Q Consensus       198 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~  261 (279)
                      ++|+.|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|++++.
T Consensus       253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            88888888888887 6666665  7888888888888755 55 88888888888888888764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.93  E-value=3.5e-25  Score=186.01  Aligned_cols=221  Identities=19%  Similarity=0.216  Sum_probs=180.4

Q ss_pred             CCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcE
Q 041953           50 VHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQY  129 (279)
Q Consensus        50 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  129 (279)
                      ...+++++|++++|.+++..|..|..+++|++|++++|.+. .+|..+.  ++|++|++++|.+....+..+..+++|++
T Consensus        75 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  151 (332)
T 2ft3_A           75 KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNC  151 (332)
T ss_dssp             TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCE
T ss_pred             hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCE
Confidence            45678999999999999888999999999999999999988 5555444  78899999998888555556788888888


Q ss_pred             EEeecccccc-ccChhhhcCC--------------------CCCcEEEeecccccccCCccCCCCccCcEEeccCCcccc
Q 041953          130 LDFGFNTLSG-EIPANICSNL--------------------PFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSG  188 (279)
Q Consensus       130 L~l~~n~~~~-~~~~~~~~~~--------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  188 (279)
                      |++++|.+.. ......+..+                    ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus       152 L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~  231 (332)
T 2ft3_A          152 IEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM  231 (332)
T ss_dssp             EECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred             EECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence            8888887742 1222222222                    467788888888876666788999999999999999998


Q ss_pred             cCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccC------CCCCCeEEccCCccc--c
Q 041953          189 VVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGN------LTGLGILQLSDNFLT--G  260 (279)
Q Consensus       189 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~------~~~L~~L~l~~n~l~--~  260 (279)
                      ..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+..      .+.|+.+++++|++.  +
T Consensus       232 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~  310 (332)
T 2ft3_A          232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE  310 (332)
T ss_dssp             CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred             CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence            77778999999999999999998 78888999999999999999999776666654      367899999999998  7


Q ss_pred             cCcccccccccccc
Q 041953          261 ITPSSIYKLLFSIK  274 (279)
Q Consensus       261 ~~~~~~~~~~~~~~  274 (279)
                      ..|..+..+..+..
T Consensus       311 ~~~~~~~~l~~L~~  324 (332)
T 2ft3_A          311 VQPATFRCVTDRLA  324 (332)
T ss_dssp             SCGGGGTTBCCSTT
T ss_pred             cCcccccccchhhh
Confidence            77888877766554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.93  E-value=1.5e-25  Score=205.38  Aligned_cols=220  Identities=23%  Similarity=0.188  Sum_probs=144.4

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF  132 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  132 (279)
                      +++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            45677777777776666666777777777777777776666666677777777777777766443345667777777777


Q ss_pred             eccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccC--CCCCccEEEcc----
Q 041953          133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEIC--NLTKLKGLYLG----  206 (279)
Q Consensus       133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~--~~~~L~~L~l~----  206 (279)
                      ++|.+. .++...|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.  .+++|+.|+++    
T Consensus       105 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          105 MSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             CSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred             CCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence            777665 55544446677777777777766655555666666666666666665543333221  22344444444    


Q ss_pred             -----------------------------------------------CcccccccCccCCCCC--CCCEEeccCCcCccc
Q 041953          207 -----------------------------------------------GNRLQGEIPRESGNLA--ELELMSLSENELQGA  237 (279)
Q Consensus       207 -----------------------------------------------~n~~~~~~~~~~~~~~--~L~~L~l~~n~i~~~  237 (279)
                                                                     +|.+.+..|..+..++  +|+.|++++|++++.
T Consensus       184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~  263 (680)
T 1ziw_A          184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV  263 (680)
T ss_dssp             CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred             cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence                                                           4444444444554443  388888888888877


Q ss_pred             CCccccCCCCCCeEEccCCcccccCccccccccccc
Q 041953          238 IPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSI  273 (279)
Q Consensus       238 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~  273 (279)
                      .+..+..+++|+.|++++|.+.+..|.+++.++++.
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  299 (680)
T 1ziw_A          264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR  299 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCC
T ss_pred             CcccccCcccccEeeCCCCccCccChhhhcCCCCcc
Confidence            777888888888888888888888887777765544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.93  E-value=1.1e-26  Score=211.18  Aligned_cols=208  Identities=18%  Similarity=0.292  Sum_probs=142.6

Q ss_pred             CCCCeEEEEEcCCCCcccc-----------------Cccccc--CCCCCCEEEccCCcccCCCCccccCCCCCcEEEccc
Q 041953           50 VHSHRVTVLNISRLNLTGT-----------------IPSQLG--NLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRK  110 (279)
Q Consensus        50 ~~~~~l~~L~l~~~~l~~~-----------------~~~~~~--~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~  110 (279)
                      .+++++++|++++|.+++.                 +|..+.  ++++|++|++++|.+.+.+|..+..+++|++|++++
T Consensus       203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  282 (636)
T 4eco_A          203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC  282 (636)
T ss_dssp             GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred             hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence            3466888999999988875                 788888  888999999999888888888888888888888888


Q ss_pred             Cc-ccc-cCCccCCCC------CCCcEEEeeccccccccCh-hhhcCCCCCcEEEeecccccccCCccCCCCccCcEEec
Q 041953          111 NQ-LSG-AFPSFAFNT------SSLQYLDFGFNTLSGEIPA-NICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGL  181 (279)
Q Consensus       111 n~-~~~-~~~~~~~~l------~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  181 (279)
                      |+ +.+ .+|..+..+      ++|++|++++|.+. .+|. ..+.++++|++|++++|.+.+.+| .+..+++|+.|++
T Consensus       283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L  360 (636)
T 4eco_A          283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL  360 (636)
T ss_dssp             CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred             CCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence            87 776 566666554      77888888888777 6776 233677777777777777776666 6666666666666


Q ss_pred             cCCcccccCCcccCCCCC-ccEEEccCcccccccCccCCCCC--CCCEEeccCCcCcccCCcccc-------CCCCCCeE
Q 041953          182 SSNDFSGVVPKEICNLTK-LKGLYLGGNRLQGEIPRESGNLA--ELELMSLSENELQGAIPREWG-------NLTGLGIL  251 (279)
Q Consensus       182 ~~n~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~n~i~~~~~~~~~-------~~~~L~~L  251 (279)
                      ++|.+. .+|..+..+++ |+.|++++|.++ .+|..+...+  +|+.|++++|++.+..|..+.       .+++|+.|
T Consensus       361 ~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L  438 (636)
T 4eco_A          361 AYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI  438 (636)
T ss_dssp             CSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEE
T ss_pred             CCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEE
Confidence            666666 55555666665 666666666665 4555444433  555555555555554444444       44445555


Q ss_pred             EccCCccccc
Q 041953          252 QLSDNFLTGI  261 (279)
Q Consensus       252 ~l~~n~l~~~  261 (279)
                      ++++|.++++
T Consensus       439 ~Ls~N~l~~l  448 (636)
T 4eco_A          439 NLSNNQISKF  448 (636)
T ss_dssp             ECCSSCCCSC
T ss_pred             ECcCCccCcC
Confidence            5555555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=9.8e-25  Score=179.76  Aligned_cols=201  Identities=25%  Similarity=0.217  Sum_probs=174.4

Q ss_pred             CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953           52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD  131 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  131 (279)
                      .++++.+++++++++ .+|..+.  +.++.|++++|.+.+..+..|..+++|++|++++|.+.... .. ..+++|++|+
T Consensus         9 l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~-~~l~~L~~L~   83 (290)
T 1p9a_G            9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-VD-GTLPVLGTLD   83 (290)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-CC-SCCTTCCEEE
T ss_pred             cCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc-CC-CCCCcCCEEE
Confidence            457899999999998 4555453  68999999999998777788999999999999999998543 32 6889999999


Q ss_pred             eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc
Q 041953          132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ  211 (279)
Q Consensus       132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~  211 (279)
                      +++|.+. .+|..+ ..+++|++|++++|.+++..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++
T Consensus        84 Ls~N~l~-~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           84 LSHNQLQ-SLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             CCSSCCS-SCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCCCcCC-cCchhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            9999997 777655 78999999999999999666678999999999999999999777777888999999999999998


Q ss_pred             cccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccc
Q 041953          212 GEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTG  260 (279)
Q Consensus       212 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~  260 (279)
                      ...+..+..+++|+.|++++|+++ .+|..+...+.|+.+++++|++.-
T Consensus       162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            666667788999999999999998 677778888999999999998864

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.93  E-value=4e-25  Score=206.90  Aligned_cols=222  Identities=19%  Similarity=0.152  Sum_probs=121.1

Q ss_pred             CCeEEEEEcCCCCccc-cCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCcc--CCCCCCCc
Q 041953           52 SHRVTVLNISRLNLTG-TIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSF--AFNTSSLQ  128 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~--~~~l~~L~  128 (279)
                      +++|++|++++|...+ +.|..|.++++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+..  +..+++|+
T Consensus        47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~  126 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT  126 (844)
T ss_dssp             CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred             cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence            3445555555553322 22455555555555555555555445555555555555555555555433332  55555566


Q ss_pred             EEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccC--------------------------CCC---------
Q 041953          129 YLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSAL--------------------------SNC---------  173 (279)
Q Consensus       129 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l--------------------------~~l---------  173 (279)
                      +|++++|.+.+..+...+.++++|++|++++|.+.+..+..+                          ..+         
T Consensus       127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L  206 (844)
T 3j0a_A          127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL  206 (844)
T ss_dssp             EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCB
T ss_pred             EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCce
Confidence            666665555432232333555555555555554432222111                          111         


Q ss_pred             -----------------------------------------------------------ccCcEEeccCCcccccCCccc
Q 041953          174 -----------------------------------------------------------AYLQRLGLSSNDFSGVVPKEI  194 (279)
Q Consensus       174 -----------------------------------------------------------~~L~~L~l~~n~~~~~~~~~l  194 (279)
                                                                                 ++|+.|++++|.+.+..+..+
T Consensus       207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~  286 (844)
T 3j0a_A          207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF  286 (844)
T ss_dssp             SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS
T ss_pred             eEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh
Confidence                                                                       234444444444444444555


Q ss_pred             CCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccccccc
Q 041953          195 CNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSI  273 (279)
Q Consensus       195 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~  273 (279)
                      ..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..+..+.++++|+.|++++|.+.++.+..|..++++.
T Consensus       287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~  365 (844)
T 3j0a_A          287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ  365 (844)
T ss_dssp             SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCC
T ss_pred             hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCC
Confidence            5566666666666666655566666666677777777766655566666667777777777776666666666555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.93  E-value=2.5e-25  Score=208.24  Aligned_cols=223  Identities=22%  Similarity=0.186  Sum_probs=169.8

Q ss_pred             CCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCC-CccccCCCCCcEEEcccCcccccCCccCCCCCCCcE
Q 041953           51 HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSI-PSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQY  129 (279)
Q Consensus        51 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  129 (279)
                      .++++++|++++|.+++..+..|.++++|++|++++|...+.+ |..|..+++|++|++++|.+.+..|..+..+++|++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence            4568999999999999888999999999999999999655444 788999999999999999999888999999999999


Q ss_pred             EEeeccccccccChh-hhcCCCCCcEEEeecccccccCC-ccCCCCccCcEEeccCCcccccCCcccCCC----------
Q 041953          130 LDFGFNTLSGEIPAN-ICSNLPFLEYLALSQNMFHGGIP-SALSNCAYLQRLGLSSNDFSGVVPKEICNL----------  197 (279)
Q Consensus       130 L~l~~n~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~----------  197 (279)
                      |++++|.+.+.++.. .+.++++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+          
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L  181 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL  181 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence            999999998555543 45899999999999999986544 578999999999999998764433222111          


Q ss_pred             --------------------------------------------------------------------------------
Q 041953          198 --------------------------------------------------------------------------------  197 (279)
Q Consensus       198 --------------------------------------------------------------------------------  197 (279)
                                                                                                      
T Consensus       182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~  261 (844)
T 3j0a_A          182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA  261 (844)
T ss_dssp             CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred             CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence                                                                                            


Q ss_pred             ----CCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccccccc
Q 041953          198 ----TKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSI  273 (279)
Q Consensus       198 ----~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~  273 (279)
                          ++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..+..+.++++|+.|++++|.+.+..|..+..++.+.
T Consensus       262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  341 (844)
T 3j0a_A          262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA  341 (844)
T ss_dssp             TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred             ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence                2344444444444444445556666667777777766666666666677777777777777766666666665544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.93  E-value=7.7e-25  Score=175.46  Aligned_cols=189  Identities=17%  Similarity=0.209  Sum_probs=96.4

Q ss_pred             CCCEEEccCCcccCCCCccccCCCCCcEEEcccCc-ccccCCccCCCCCCCcEEEeec-cccccccChhhhcCCCCCcEE
Q 041953           78 SLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQ-LSGAFPSFAFNTSSLQYLDFGF-NTLSGEIPANICSNLPFLEYL  155 (279)
Q Consensus        78 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~L  155 (279)
                      +|++|++++|.+.+..+..|..+++|++|++++|+ +....+..+..+++|++|++++ |.+. .++...|.++++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence            45555555555553333345555555555555554 4433333455555555555555 5554 4444444555555555


Q ss_pred             EeecccccccCCccCCCCccCc---EEeccCC-cccccCCcccCCCCCcc-EEEccCcccccccCccCCCCCCCCEEecc
Q 041953          156 ALSQNMFHGGIPSALSNCAYLQ---RLGLSSN-DFSGVVPKEICNLTKLK-GLYLGGNRLQGEIPRESGNLAELELMSLS  230 (279)
Q Consensus       156 ~l~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~l~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  230 (279)
                      ++++|.+++ +|. +..+++|+   .|++++| .+....+..+..+++|+ .+++++|.++...+..+.. ++|+.|+++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence            555555542 333 44444554   5555555 55544444455555555 5555555555222222222 555555555


Q ss_pred             CCc-CcccCCccccCC-CCCCeEEccCCcccccCcccccccc
Q 041953          231 ENE-LQGAIPREWGNL-TGLGILQLSDNFLTGITPSSIYKLL  270 (279)
Q Consensus       231 ~n~-i~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~  270 (279)
                      +|+ +++..+..|.++ ++|+.|++++|+++++++..+..+.
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~  229 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLK  229 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCS
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCc
Confidence            553 554444455555 5555555555555555444444443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.93  E-value=2.8e-25  Score=200.98  Aligned_cols=195  Identities=24%  Similarity=0.179  Sum_probs=115.6

Q ss_pred             ccCCCCCCEEEccCCcccCC--CCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCC
Q 041953           73 LGNLSSLQSLNLSCNRLSGS--IPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLP  150 (279)
Q Consensus        73 ~~~l~~L~~L~l~~~~i~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  150 (279)
                      +..+++|++|++++|.+.+.  .+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+...+..++
T Consensus       346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  424 (606)
T 3vq2_A          346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE  424 (606)
T ss_dssp             CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred             hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence            33455555555555555432  2455555666666666666655 34455556666666666666665333323445666


Q ss_pred             CCcEEEeecccccccCCccCCCCccCcEEeccCCcccc-cCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEec
Q 041953          151 FLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSG-VVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSL  229 (279)
Q Consensus       151 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  229 (279)
                      +|++|++++|.+.+..|..+..+++|++|++++|.+.+ ..|..+..+++|+.|++++|.+++..|..+..+++|+.|++
T Consensus       425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  504 (606)
T 3vq2_A          425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM  504 (606)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence            66666666666665555666666666666666666654 24555666666666666666666555666666666666666


Q ss_pred             cCCcCcccCCccccCCCCCCeEEccCCcccccCccccccc
Q 041953          230 SENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL  269 (279)
Q Consensus       230 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  269 (279)
                      ++|++++..|..+..+++|+.|++++|+++++++ .+..+
T Consensus       505 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~-~~~~l  543 (606)
T 3vq2_A          505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG-ILQHF  543 (606)
T ss_dssp             CSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEES-CGGGS
T ss_pred             CCCcCCCcCHHHccCCCcCCEEECCCCcCcccCH-hHhhh
Confidence            6666665556666666666666666666664433 24444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.93  E-value=7.7e-25  Score=200.61  Aligned_cols=213  Identities=20%  Similarity=0.173  Sum_probs=156.9

Q ss_pred             eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCC-ccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953           54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIP-SAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF  132 (279)
Q Consensus        54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  132 (279)
                      .++.|++++|.+++..|..|..+++|+.|++++|.+.+.++ ..|..+++|++|++++|++....+..+..+++|+.|++
T Consensus       382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  461 (680)
T 1ziw_A          382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML  461 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred             cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence            56677777777777777778888888888888888765444 56777888888888888877666667777777778777


Q ss_pred             eccccc--cccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCC--------cccCCCCCccE
Q 041953          133 GFNTLS--GEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVP--------KEICNLTKLKG  202 (279)
Q Consensus       133 ~~n~~~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--------~~l~~~~~L~~  202 (279)
                      ++|.+.  +.+|.. +..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+        ..+..+++|+.
T Consensus       462 ~~n~l~~~~~~p~~-~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~  540 (680)
T 1ziw_A          462 RRVALKNVDSSPSP-FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI  540 (680)
T ss_dssp             TTSCCBCTTCSSCT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred             ccccccccccCCcc-cccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence            777664  233433 3677888888888888876666667778888888888887764321        23567778888


Q ss_pred             EEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccc
Q 041953          203 LYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIY  267 (279)
Q Consensus       203 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  267 (279)
                      |++++|.++...+..+.++++|+.|++++|++++..+..|..+++|+.|++++|.+++..+..+.
T Consensus       541 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  605 (680)
T 1ziw_A          541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG  605 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred             EECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence            88888888744445677888888888888888866666677888888888888888887776554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.93  E-value=1.1e-24  Score=175.87  Aligned_cols=192  Identities=21%  Similarity=0.271  Sum_probs=165.4

Q ss_pred             CCcceeeeeeCCCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCC
Q 041953           39 PVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFP  118 (279)
Q Consensus        39 ~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  118 (279)
                      .++.|.|+.|..   ..+.++++++.++ .+|..+.  +.++.|++++|.+.+..+..|..+++|++|++++|.+.+..+
T Consensus         3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   76 (251)
T 3m19_A            3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA   76 (251)
T ss_dssp             -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence            466799999953   4567899999998 5665554  689999999999998888889999999999999999998777


Q ss_pred             ccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCC
Q 041953          119 SFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLT  198 (279)
Q Consensus       119 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~  198 (279)
                      ..+..+++|++|++++|.+. .++...|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..++
T Consensus        77 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  155 (251)
T 3m19_A           77 GVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT  155 (251)
T ss_dssp             TTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc
Confidence            78899999999999999998 77777778999999999999999866666678899999999999999876666788899


Q ss_pred             CccEEEccCcccccccCccCCCCCCCCEEeccCCcCccc
Q 041953          199 KLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGA  237 (279)
Q Consensus       199 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~  237 (279)
                      +|+.|++++|.+++..+..+..+++|+.|++++|++...
T Consensus       156 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            999999999999877777888899999999999998754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=4e-24  Score=174.42  Aligned_cols=194  Identities=26%  Similarity=0.282  Sum_probs=171.7

Q ss_pred             CCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEE
Q 041953           77 SSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLA  156 (279)
Q Consensus        77 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  156 (279)
                      ...+.++++++.++ .+|..+.  +++++|++++|.+....+..+..+++|++|++++|.+. .++...|..+++|++|+
T Consensus        16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred             CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence            35789999999998 5666443  68999999999999766678999999999999999998 88888888999999999


Q ss_pred             eecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcc
Q 041953          157 LSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQG  236 (279)
Q Consensus       157 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~  236 (279)
                      +++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence            99999986666778899999999999999998888888999999999999999987666778999999999999999997


Q ss_pred             cCCccccCCCCCCeEEccCCcccccCcccccccccccc
Q 041953          237 AIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK  274 (279)
Q Consensus       237 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  274 (279)
                      ..+..+.++++|+.|++++|.+++.++..+..++.+..
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  209 (270)
T 2o6q_A          172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM  209 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCE
Confidence            77778999999999999999999998887877765543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.92  E-value=7.1e-25  Score=198.28  Aligned_cols=210  Identities=20%  Similarity=0.211  Sum_probs=187.3

Q ss_pred             CCCeEEEEEcCCCCcccc--CcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCC-ccCCCCCCC
Q 041953           51 HSHRVTVLNISRLNLTGT--IPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFP-SFAFNTSSL  127 (279)
Q Consensus        51 ~~~~l~~L~l~~~~l~~~--~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L  127 (279)
                      ..+++++|++++|.+++.  .+..+..+++|++|++++|.+. ..|..+..+++|+.|++++|.+.+..+ ..+..+++|
T Consensus       348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  426 (606)
T 3vq2_A          348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL  426 (606)
T ss_dssp             CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred             cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence            467899999999998865  3788899999999999999998 567889999999999999999997766 678899999


Q ss_pred             cEEEeeccccccccChhhhcCCCCCcEEEeecccccc-cCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEcc
Q 041953          128 QYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHG-GIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLG  206 (279)
Q Consensus       128 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~  206 (279)
                      ++|++++|.+.+..+. .+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..|..+..+++|+.|+++
T Consensus       427 ~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  505 (606)
T 3vq2_A          427 LYLDISYTNTKIDFDG-IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS  505 (606)
T ss_dssp             CEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEECcCCCCCccchh-hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence            9999999999844554 45899999999999999986 378889999999999999999998888899999999999999


Q ss_pred             CcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCC-CCCeEEccCCcccccCc
Q 041953          207 GNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLT-GLGILQLSDNFLTGITP  263 (279)
Q Consensus       207 ~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~  263 (279)
                      +|.+++..|..+..+++|+.|++++|+++ .+|..+..++ +|+.+++++|++...-+
T Consensus       506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             SSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             CCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            99999888999999999999999999998 6666688887 59999999999987544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=3.2e-25  Score=195.29  Aligned_cols=195  Identities=23%  Similarity=0.198  Sum_probs=118.9

Q ss_pred             CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953           52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD  131 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  131 (279)
                      .++|++|++++|.+++..|..|..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+     .++|++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            3478999999999988778888899999999999998875444  7888889999999888774321     25566666


Q ss_pred             eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccC-CCCCccEEEccCccc
Q 041953          132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEIC-NLTKLKGLYLGGNRL  210 (279)
Q Consensus       132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~n~~  210 (279)
                      +++|.+. .++.   ..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|++++|.+
T Consensus       106 L~~N~l~-~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          106 AANNNIS-RVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             CCSSCCC-CEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             CcCCcCC-CCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            6666554 2222   2245555555555555544444555555555555555555544444443 455555555555555


Q ss_pred             ccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccc
Q 041953          211 QGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTG  260 (279)
Q Consensus       211 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~  260 (279)
                      ++..+  ...+++|+.|+|++|.+++..+ .+..+++|+.|++++|.+++
T Consensus       182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~  228 (487)
T 3oja_A          182 YDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL  228 (487)
T ss_dssp             CEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE
T ss_pred             ccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc
Confidence            43311  2234555555555555553322 35555555555555555554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=1.6e-24  Score=177.36  Aligned_cols=211  Identities=21%  Similarity=0.198  Sum_probs=176.7

Q ss_pred             EcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccc
Q 041953           59 NISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLS  138 (279)
Q Consensus        59 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  138 (279)
                      +-.+.++. .+|..+.  ++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus        13 ~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   89 (276)
T 2z62_A           13 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ   89 (276)
T ss_dssp             ECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             EecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence            33444454 4555553  57999999999999766668999999999999999999777778999999999999999998


Q ss_pred             cccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCccccc-CCcccCCCCCccEEEccCcccccccCcc
Q 041953          139 GEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGV-VPKEICNLTKLKGLYLGGNRLQGEIPRE  217 (279)
Q Consensus       139 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~  217 (279)
                       .++...+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .|..+..+++|+.|++++|.+++..+..
T Consensus        90 -~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~  168 (276)
T 2z62_A           90 -SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  168 (276)
T ss_dssp             -EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             -ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence             66666668999999999999999866666799999999999999999864 5888999999999999999998777777


Q ss_pred             CCCCCCCC----EEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccccccccc
Q 041953          218 SGNLAELE----LMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK  274 (279)
Q Consensus       218 ~~~~~~L~----~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  274 (279)
                      +..+++|+    .|++++|++++..+..+. ..+|+.|++++|.+++.++..+..++++..
T Consensus       169 ~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  228 (276)
T 2z62_A          169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQK  228 (276)
T ss_dssp             GHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCE
T ss_pred             hhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccE
Confidence            77666776    899999999866555544 458999999999999998877777766553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.92  E-value=3e-24  Score=190.86  Aligned_cols=86  Identities=23%  Similarity=0.209  Sum_probs=65.0

Q ss_pred             CCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccc-cCCccCCCCCCCc
Q 041953           50 VHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG-AFPSFAFNTSSLQ  128 (279)
Q Consensus        50 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~  128 (279)
                      ..++++++|++++|.+++..|..|+++++|++|++++|.+. .+|..  .+++|++|++++|.+.+ ..|..+..+++|+
T Consensus        42 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~  118 (520)
T 2z7x_B           42 LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLK  118 (520)
T ss_dssp             TTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred             cccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcce
Confidence            34567888888888887777778888888888888888877 45554  67788888888888775 3567777788888


Q ss_pred             EEEeeccccc
Q 041953          129 YLDFGFNTLS  138 (279)
Q Consensus       129 ~L~l~~n~~~  138 (279)
                      +|++++|.+.
T Consensus       119 ~L~L~~n~l~  128 (520)
T 2z7x_B          119 FLGLSTTHLE  128 (520)
T ss_dssp             EEEEEESSCC
T ss_pred             EEEecCcccc
Confidence            8888777664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.92  E-value=6.5e-25  Score=182.63  Aligned_cols=202  Identities=23%  Similarity=0.221  Sum_probs=157.0

Q ss_pred             eEEEEEcCCCCccccCcccc--cCCCCCCEEEccCCcccCCCC----ccccCCCCCcEEEcccCcccccCCccCCCCCCC
Q 041953           54 RVTVLNISRLNLTGTIPSQL--GNLSSLQSLNLSCNRLSGSIP----SAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSL  127 (279)
Q Consensus        54 ~l~~L~l~~~~l~~~~~~~~--~~l~~L~~L~l~~~~i~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L  127 (279)
                      ++++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            58889999998888888777  788899999999998875444    334568889999999999887777788888999


Q ss_pred             cEEEeeccccccc--cC-hhhhcCCCCCcEEEeecccccccCCc----cCCCCccCcEEeccCCcccccCCcccCCC---
Q 041953          128 QYLDFGFNTLSGE--IP-ANICSNLPFLEYLALSQNMFHGGIPS----ALSNCAYLQRLGLSSNDFSGVVPKEICNL---  197 (279)
Q Consensus       128 ~~L~l~~n~~~~~--~~-~~~~~~~~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~l~~n~~~~~~~~~l~~~---  197 (279)
                      ++|++++|++.+.  ++ ...+..+++|++|++++|.++ .++.    .+..+++|++|++++|.+.+..|..+..+   
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            9999999987532  22 222357888999999999886 3232    24567889999999999887767666665   


Q ss_pred             CCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCccccc
Q 041953          198 TKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGI  261 (279)
Q Consensus       198 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~  261 (279)
                      ++|+.|++++|.++ .+|..+.  ++|+.|++++|++++. |. +..+++|+.|++++|+++..
T Consensus       251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSCC
T ss_pred             CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCCC
Confidence            68999999999988 5666664  7899999999998854 33 67788999999999988753

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.92  E-value=1.6e-24  Score=192.51  Aligned_cols=107  Identities=28%  Similarity=0.377  Sum_probs=93.5

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF  132 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  132 (279)
                      +++++|++++|.+++..|..|.++++|++|++++|.+.+..|..|..+++|++|++++|++. .+|..  .+++|++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence            58999999999999888889999999999999999999777889999999999999999998 55655  8999999999


Q ss_pred             ecccccc-ccChhhhcCCCCCcEEEeeccccc
Q 041953          133 GFNTLSG-EIPANICSNLPFLEYLALSQNMFH  163 (279)
Q Consensus       133 ~~n~~~~-~~~~~~~~~~~~L~~L~l~~n~l~  163 (279)
                      ++|.+.+ .+|..+ .++++|++|++++|.+.
T Consensus        98 ~~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           98 SFNAFDALPICKEF-GNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             CSSCCSSCCCCGGG-GGCTTCCEEEEEESSCC
T ss_pred             cCCccccccchhhh-ccCCcceEEEecCcccc
Confidence            9999974 345544 78888888888888764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.92  E-value=3.2e-24  Score=171.83  Aligned_cols=197  Identities=18%  Similarity=0.217  Sum_probs=170.2

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCc-ccCCCCccccCCCCCcEEEccc-CcccccCCccCCCCCCCcEE
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNR-LSGSIPSAIFTTYTLKYVSFRK-NQLSGAFPSFAFNTSSLQYL  130 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L  130 (279)
                      ..+++|++++|.++++.+..|..+++|++|++++|. +....+..|..+++|++|++++ |.+....+..+..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            479999999999998878899999999999999997 8766666899999999999998 99986666788899999999


Q ss_pred             EeeccccccccChhhhcCCCCCc---EEEeecc-cccccCCccCCCCccCc-EEeccCCcccccCCcccCCCCCccEEEc
Q 041953          131 DFGFNTLSGEIPANICSNLPFLE---YLALSQN-MFHGGIPSALSNCAYLQ-RLGLSSNDFSGVVPKEICNLTKLKGLYL  205 (279)
Q Consensus       131 ~l~~n~~~~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~l~~~~~L~~L~l  205 (279)
                      ++++|.+. .+|.  +..+++|+   +|++++| .+....+..+..+++|+ .|++++|.+....+..+.. ++|+.|++
T Consensus       111 ~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L  186 (239)
T 2xwt_C          111 GIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL  186 (239)
T ss_dssp             EEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred             eCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence            99999998 6776  57888888   9999999 88866667799999999 9999999998444445555 89999999


Q ss_pred             cCcc-cccccCccCCCC-CCCCEEeccCCcCcccCCccccCCCCCCeEEccCC
Q 041953          206 GGNR-LQGEIPRESGNL-AELELMSLSENELQGAIPREWGNLTGLGILQLSDN  256 (279)
Q Consensus       206 ~~n~-~~~~~~~~~~~~-~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n  256 (279)
                      ++|. ++...+..+..+ ++|+.|++++|++++. |..  .+++|+.|+++++
T Consensus       187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred             CCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence            9995 886767888999 9999999999999844 433  6789999999876

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=7.8e-24  Score=172.89  Aligned_cols=201  Identities=22%  Similarity=0.264  Sum_probs=173.1

Q ss_pred             EEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeecc
Q 041953           56 TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFN  135 (279)
Q Consensus        56 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  135 (279)
                      ..+.+..+.+...  ..+..+++|+.|+++++.+. .. ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|
T Consensus        22 ~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           22 IKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN   95 (272)
T ss_dssp             HHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTS
T ss_pred             HHHHhcCcccccc--cccccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCC
Confidence            3444555555433  33556889999999999987 33 3588899999999999999853  57889999999999999


Q ss_pred             ccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccC
Q 041953          136 TLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIP  215 (279)
Q Consensus       136 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~  215 (279)
                      .+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+
T Consensus        96 ~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  174 (272)
T 3rfs_A           96 QLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE  174 (272)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             ccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence            998 7777777899999999999999997777778999999999999999997777778899999999999999997777


Q ss_pred             ccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCc
Q 041953          216 RESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITP  263 (279)
Q Consensus       216 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  263 (279)
                      ..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            778999999999999999998888889999999999999999988755

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.92  E-value=3.4e-24  Score=192.20  Aligned_cols=107  Identities=27%  Similarity=0.391  Sum_probs=86.9

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF  132 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  132 (279)
                      +++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|..+++|++|++++|.+. .+|..  .+++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence            57889999999998777788999999999999999998777888888999999999999888 55555  7888888888


Q ss_pred             eccccccccC-hhhhcCCCCCcEEEeeccccc
Q 041953          133 GFNTLSGEIP-ANICSNLPFLEYLALSQNMFH  163 (279)
Q Consensus       133 ~~n~~~~~~~-~~~~~~~~~L~~L~l~~n~l~  163 (279)
                      ++|++. .++ +..+.++++|++|++++|.+.
T Consensus       129 s~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          129 SFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             CSSCCS-BCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             CCCCcc-ccCchHhhcccCcccEEecCCCccc
Confidence            888887 443 234477888888888887765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=7.4e-26  Score=188.52  Aligned_cols=213  Identities=24%  Similarity=0.282  Sum_probs=165.4

Q ss_pred             EEEEEcCCCCcc-ccCccccc-------CCCCCCEEEccCCcccCCCCccc--cCCCCCcEEEcccCcccccCCccCCCC
Q 041953           55 VTVLNISRLNLT-GTIPSQLG-------NLSSLQSLNLSCNRLSGSIPSAI--FTTYTLKYVSFRKNQLSGAFPSFAFNT  124 (279)
Q Consensus        55 l~~L~l~~~~l~-~~~~~~~~-------~l~~L~~L~l~~~~i~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l  124 (279)
                      ++.|++++|.+. ..++..+.       ++++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+. |..+..+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence            455566666663 23444443       68899999999999988888876  7899999999999999865 7666655


Q ss_pred             -----CCCcEEEeeccccccccChhhhcCCCCCcEEEeeccccccc--CCccC--CCCccCcEEeccCCccccc---CCc
Q 041953          125 -----SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGG--IPSAL--SNCAYLQRLGLSSNDFSGV---VPK  192 (279)
Q Consensus       125 -----~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~l--~~l~~L~~L~l~~n~~~~~---~~~  192 (279)
                           ++|++|++++|++. .++...+..+++|++|++++|.+.+.  .+..+  ..+++|++|++++|.+.+.   ...
T Consensus       144 ~~~~~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  222 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA  222 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCC-CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred             HHhhcCCCcEEEeeCCCCc-cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence                 89999999999997 66655568899999999999987643  23333  7788999999999998732   223


Q ss_pred             ccCCCCCccEEEccCcccccccC-ccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccccc
Q 041953          193 EICNLTKLKGLYLGGNRLQGEIP-RESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLF  271 (279)
Q Consensus       193 ~l~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  271 (279)
                      .+..+++|+.|++++|.+++..| ..+..+++|++|++++|+++ .+|..+.  ++|+.|++++|++++. |. +..++.
T Consensus       223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~  297 (312)
T 1wwl_A          223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQ  297 (312)
T ss_dssp             HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCE
T ss_pred             HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCC
Confidence            34567899999999999987664 45667899999999999998 6676666  8999999999999998 44 766665


Q ss_pred             ccc
Q 041953          272 SIK  274 (279)
Q Consensus       272 ~~~  274 (279)
                      +..
T Consensus       298 L~~  300 (312)
T 1wwl_A          298 VGN  300 (312)
T ss_dssp             EEE
T ss_pred             CCE
Confidence            543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.92  E-value=2e-24  Score=193.83  Aligned_cols=189  Identities=25%  Similarity=0.285  Sum_probs=134.2

Q ss_pred             cCCCCCCEEEccCCcccCCC--CccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCC
Q 041953           74 GNLSSLQSLNLSCNRLSGSI--PSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPF  151 (279)
Q Consensus        74 ~~l~~L~~L~l~~~~i~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  151 (279)
                      ..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+. +..+..+++|++|++++|.+.+..+...+..+++
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  422 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN  422 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence            45666777777777665332  45566777777777777776633 3336677777777777777764444344567777


Q ss_pred             CcEEEeecccccccCCccCCCCccCcEEeccCCccc-ccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEecc
Q 041953          152 LEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFS-GVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLS  230 (279)
Q Consensus       152 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  230 (279)
                      |++|++++|.+.+..+..+..+++|++|++++|.+. +..|..+..+++|+.|++++|.+++..|..+..+++|+.|+++
T Consensus       423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  502 (570)
T 2z63_A          423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA  502 (570)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence            777777777777666777777777788888777776 3566777777778888888777776667777777778888888


Q ss_pred             CCcCcccCCccccCCCCCCeEEccCCcccccCc
Q 041953          231 ENELQGAIPREWGNLTGLGILQLSDNFLTGITP  263 (279)
Q Consensus       231 ~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  263 (279)
                      +|++++..+..+.++++|+.|++++|++.+..|
T Consensus       503 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            887776666677777788888888887777655

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.92  E-value=6.3e-25  Score=196.38  Aligned_cols=210  Identities=18%  Similarity=0.154  Sum_probs=165.4

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF  132 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  132 (279)
                      +++++|++++|.+++..|..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            47999999999999888888999999999999999998777788999999999999999998666666889999999999


Q ss_pred             ecccccc-ccChhhhcCCCCCcEEEeecccccccC-CccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccc
Q 041953          133 GFNTLSG-EIPANICSNLPFLEYLALSQNMFHGGI-PSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRL  210 (279)
Q Consensus       133 ~~n~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~  210 (279)
                      ++|.+.+ ..+. .+.++++|++|++++|...+.+ +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus       106 s~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  184 (549)
T 2z81_A          106 MGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES  184 (549)
T ss_dssp             TTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred             CCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence            9998873 2233 4478999999999999843344 46788899999999999999888888888888899999988887


Q ss_pred             ccccCccCCCCCCCCEEeccCCcCcccC--C-ccccCCCCCCeEEccCCcccccCc
Q 041953          211 QGEIPRESGNLAELELMSLSENELQGAI--P-REWGNLTGLGILQLSDNFLTGITP  263 (279)
Q Consensus       211 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~-~~~~~~~~L~~L~l~~n~l~~~~~  263 (279)
                      .......+..+++|+.|++++|++++..  + .....+++|+.|++++|.+.+..+
T Consensus       185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  240 (549)
T 2z81_A          185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF  240 (549)
T ss_dssp             TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred             cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH
Confidence            6332222345788888888888887532  1 223445667777777776665444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=9.6e-25  Score=182.16  Aligned_cols=212  Identities=21%  Similarity=0.172  Sum_probs=121.6

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCc-------------
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPS-------------  119 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-------------  119 (279)
                      +++++|++++|.+++..|..|..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+.             
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l  111 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI  111 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCcc
Confidence            456677777777766556666677777777777776653332  66666677777776665522100             


Q ss_pred             ---cCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccC-CCCccCcEEeccCCcccccCCcccC
Q 041953          120 ---FAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSAL-SNCAYLQRLGLSSNDFSGVVPKEIC  195 (279)
Q Consensus       120 ---~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~l~  195 (279)
                         ....+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+. + ...
T Consensus       112 ~~~~~~~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~  188 (317)
T 3o53_A          112 SRVSCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQV  188 (317)
T ss_dssp             SEEEECCCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCC
T ss_pred             CCcCccccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-ccc
Confidence               0112345556666666555 3433333556666666666666654444443 2455666666666666533 2 122


Q ss_pred             CCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCccc-ccCccccccccc
Q 041953          196 NLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLT-GITPSSIYKLLF  271 (279)
Q Consensus       196 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~  271 (279)
                      .+++|+.|++++|.+++ +|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++. +..|..+..++.
T Consensus       189 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~  263 (317)
T 3o53_A          189 VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR  263 (317)
T ss_dssp             CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH
T ss_pred             ccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhcccc
Confidence            35566666666666653 3334556666666666666666 34555666666666666666666 555555554433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=3.1e-23  Score=167.34  Aligned_cols=180  Identities=23%  Similarity=0.273  Sum_probs=161.7

Q ss_pred             CCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEe
Q 041953           78 SLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLAL  157 (279)
Q Consensus        78 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l  157 (279)
                      ..++++++++.+. .+|..+.  ++++.|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|++|++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEEC
Confidence            4678999999988 6676554  68999999999999887788999999999999999998 677666789999999999


Q ss_pred             ecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCccc
Q 041953          158 SQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGA  237 (279)
Q Consensus       158 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~  237 (279)
                      ++|.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++.
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            99999977777889999999999999999977777788999999999999999977777899999999999999999988


Q ss_pred             CCccccCCCCCCeEEccCCccccc
Q 041953          238 IPREWGNLTGLGILQLSDNFLTGI  261 (279)
Q Consensus       238 ~~~~~~~~~~L~~L~l~~n~l~~~  261 (279)
                      .+..+..+++|+.|++++|++...
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CHHHHhCCCCCCEEEeeCCceeCC
Confidence            778899999999999999999876

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.91  E-value=8.8e-24  Score=189.55  Aligned_cols=86  Identities=17%  Similarity=0.150  Sum_probs=74.1

Q ss_pred             CCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccc-cCCccCCCCCCCc
Q 041953           50 VHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG-AFPSFAFNTSSLQ  128 (279)
Q Consensus        50 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~  128 (279)
                      ...+++++|++++|.+++..|..|.++++|++|++++|.+. .+|..  .+++|++|++++|.+.+ ..|..+..+++|+
T Consensus        73 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~  149 (562)
T 3a79_B           73 SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLT  149 (562)
T ss_dssp             TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCC
T ss_pred             ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCccc
Confidence            45678999999999999888999999999999999999998 56665  78999999999999885 3457888899999


Q ss_pred             EEEeeccccc
Q 041953          129 YLDFGFNTLS  138 (279)
Q Consensus       129 ~L~l~~n~~~  138 (279)
                      +|++++|.+.
T Consensus       150 ~L~L~~n~l~  159 (562)
T 3a79_B          150 FLGLSAAKFR  159 (562)
T ss_dssp             EEEEECSBCC
T ss_pred             EEecCCCccc
Confidence            9999988775

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=2.5e-23  Score=171.32  Aligned_cols=189  Identities=23%  Similarity=0.277  Sum_probs=166.3

Q ss_pred             ccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCC
Q 041953           73 LGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFL  152 (279)
Q Consensus        73 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L  152 (279)
                      +.+++++++++++++.+. .+|..+.  ++++.|++++|.+.+..+..+..+++|++|++++|.+. .++..  ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcC
Confidence            667899999999999998 6665543  68999999999999777788999999999999999997 55543  679999


Q ss_pred             cEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCC
Q 041953          153 EYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSEN  232 (279)
Q Consensus       153 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  232 (279)
                      ++|++++|.+. .+|..+..+++|+.|++++|.++...+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            99999999998 77888899999999999999999777788999999999999999999777777889999999999999


Q ss_pred             cCcccCCccccCCCCCCeEEccCCcccccCccccccc
Q 041953          233 ELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL  269 (279)
Q Consensus       233 ~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  269 (279)
                      +++...+..+.++++|+.|++++|.++.+++ .+...
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~-~~~~~  194 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLYTIPK-GFFGS  194 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTT
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCCccCh-hhccc
Confidence            9997777778999999999999999997644 44443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.91  E-value=5.7e-24  Score=190.91  Aligned_cols=217  Identities=22%  Similarity=0.298  Sum_probs=169.1

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCcc--------------------ccCCCCCcEEEcccCc
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSA--------------------IFTTYTLKYVSFRKNQ  112 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~--------------------~~~~~~L~~L~l~~n~  112 (279)
                      ++++.|+++++.+. .+|..+..+ +|++|++++|.+. .+|..                    ...+++|++|++++|.
T Consensus       282 ~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~  358 (570)
T 2z63_A          282 TNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG  358 (570)
T ss_dssp             TTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC
T ss_pred             CcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCc
Confidence            45666666666665 345555554 5555555555554 22221                    1456777788887777


Q ss_pred             ccccC--CccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCC-ccCCCCccCcEEeccCCccccc
Q 041953          113 LSGAF--PSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIP-SALSNCAYLQRLGLSSNDFSGV  189 (279)
Q Consensus       113 ~~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~  189 (279)
                      +.+..  +..+..+++|++|++++|.+. .++.. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.
T Consensus       359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  436 (570)
T 2z63_A          359 LSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA  436 (570)
T ss_dssp             CBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC
T ss_pred             cCccccccccccccCccCEEECCCCccc-ccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc
Confidence            76432  455667888888888888887 55555 5788999999999998876555 4688899999999999999888


Q ss_pred             CCcccCCCCCccEEEccCcccc-cccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccc
Q 041953          190 VPKEICNLTKLKGLYLGGNRLQ-GEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYK  268 (279)
Q Consensus       190 ~~~~l~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  268 (279)
                      .+..+..+++|+.|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++.++..+..
T Consensus       437 ~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  516 (570)
T 2z63_A          437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR  516 (570)
T ss_dssp             CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhc
Confidence            8888999999999999999987 468889999999999999999999888999999999999999999999998888888


Q ss_pred             cccccc
Q 041953          269 LLFSIK  274 (279)
Q Consensus       269 ~~~~~~  274 (279)
                      ++++..
T Consensus       517 l~~L~~  522 (570)
T 2z63_A          517 LTSLQK  522 (570)
T ss_dssp             CTTCCE
T ss_pred             ccCCcE
Confidence            776654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.91  E-value=1.3e-24  Score=201.96  Aligned_cols=183  Identities=20%  Similarity=0.286  Sum_probs=143.1

Q ss_pred             CCCCeEEEEEcCCCCccc-----------------cCccccc--CCCCCCEEEccCCcccCCCCccccCCCCCcEEEccc
Q 041953           50 VHSHRVTVLNISRLNLTG-----------------TIPSQLG--NLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRK  110 (279)
Q Consensus        50 ~~~~~l~~L~l~~~~l~~-----------------~~~~~~~--~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~  110 (279)
                      .++++|++|+|++|.+++                 .+|..++  ++++|+.|++++|.+.+.+|..+..+++|++|++++
T Consensus       445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~  524 (876)
T 4ecn_A          445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC  524 (876)
T ss_dssp             GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred             hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence            456789999999999987                 3788877  999999999999998888999999999999999999


Q ss_pred             Cc-ccc-cCCccC-------CCCCCCcEEEeeccccccccCh-hhhcCCCCCcEEEeecccccccCCccCCCCccCcEEe
Q 041953          111 NQ-LSG-AFPSFA-------FNTSSLQYLDFGFNTLSGEIPA-NICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLG  180 (279)
Q Consensus       111 n~-~~~-~~~~~~-------~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  180 (279)
                      |+ +.+ .+|..+       ..+++|++|++++|.+. .+|. ..+.++++|++|++++|.+. .+| .+..+++|+.|+
T Consensus       525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~  601 (876)
T 4ecn_A          525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLK  601 (876)
T ss_dssp             CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEE
T ss_pred             CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEE
Confidence            98 776 566543       34558999999999887 7877 23478888888888888887 677 788888888888


Q ss_pred             ccCCcccccCCcccCCCCC-ccEEEccCcccccccCccCCCCCC--CCEEeccCCcCccc
Q 041953          181 LSSNDFSGVVPKEICNLTK-LKGLYLGGNRLQGEIPRESGNLAE--LELMSLSENELQGA  237 (279)
Q Consensus       181 l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~--L~~L~l~~n~i~~~  237 (279)
                      +++|.+. .+|..+..+++ |+.|++++|.++ .+|..+...+.  |+.|++++|++.+.
T Consensus       602 Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~  659 (876)
T 4ecn_A          602 LDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSE  659 (876)
T ss_dssp             CCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred             CcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCc
Confidence            8888887 67777777777 888888888876 56655554432  55566665555443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.91  E-value=5.2e-23  Score=186.59  Aligned_cols=77  Identities=19%  Similarity=0.228  Sum_probs=50.3

Q ss_pred             ccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccc
Q 041953          193 EICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL  269 (279)
Q Consensus       193 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  269 (279)
                      .+..+++|+.|++++|.+++..|..|.++++|+.|+|++|++++..+..|.++++|+.|++++|.+++..|..+..+
T Consensus       489 ~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l  565 (635)
T 4g8a_A          489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF  565 (635)
T ss_dssp             CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred             hhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence            34445556666666666665566666666677777777776666666666666777777777777777766666555

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.91  E-value=1.5e-23  Score=174.22  Aligned_cols=195  Identities=22%  Similarity=0.277  Sum_probs=166.6

Q ss_pred             CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953           52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD  131 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  131 (279)
                      .+++++|+++++.++. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+.  +.+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence            4579999999999984 44 588899999999999999854 44 89999999999999998853  4688999999999


Q ss_pred             eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc
Q 041953          132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ  211 (279)
Q Consensus       132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~  211 (279)
                      +++|.+. .++.  +..+++|++|++++|.+.+. +. +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.++
T Consensus       114 l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          114 LTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             CTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCC-Cchh--hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence            9999997 5654  58899999999999999843 32 8889999999999999985433  888999999999999998


Q ss_pred             cccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCc
Q 041953          212 GEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITP  263 (279)
Q Consensus       212 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  263 (279)
                      +..+  +..+++|++|++++|++++..  .+..+++|+.|++++|++++.+.
T Consensus       187 ~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          187 DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred             cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence            5433  788999999999999998554  38899999999999999988543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.91  E-value=2.1e-24  Score=192.99  Aligned_cols=130  Identities=22%  Similarity=0.172  Sum_probs=110.6

Q ss_pred             CCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccc-cCCccCCCCCCCc
Q 041953           50 VHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG-AFPSFAFNTSSLQ  128 (279)
Q Consensus        50 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~  128 (279)
                      ..++++++|++++|.+++..|..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+ ..+..+..+++|+
T Consensus        47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  126 (549)
T 2z81_A           47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ  126 (549)
T ss_dssp             SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred             hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence            456789999999999998888999999999999999999997777779999999999999999985 3567889999999


Q ss_pred             EEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEE
Q 041953          129 YLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRL  179 (279)
Q Consensus       129 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  179 (279)
                      +|++++|.+.+.++...+.++++|++|++++|.+.+..|..+..+++|+.|
T Consensus       127 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  177 (549)
T 2z81_A          127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL  177 (549)
T ss_dssp             EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred             EEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence            999999985557877667899999999999999987777766554433333

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=2.1e-24  Score=180.14  Aligned_cols=209  Identities=22%  Similarity=0.191  Sum_probs=162.9

Q ss_pred             CCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCC----------------ccccCCCCCcEEEcccCccc
Q 041953           51 HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIP----------------SAIFTTYTLKYVSFRKNQLS  114 (279)
Q Consensus        51 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~----------------~~~~~~~~L~~L~l~~n~~~  114 (279)
                      ..+++++|++++|.+++..+  +..+++|++|++++|.+.+..+                .....+++|++|++++|.+.
T Consensus        56 ~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~  133 (317)
T 3o53_A           56 PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT  133 (317)
T ss_dssp             TCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCC
T ss_pred             CCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCC
Confidence            44567777777777765443  6667777777777776652110                01123567888888888888


Q ss_pred             ccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCccc
Q 041953          115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEI  194 (279)
Q Consensus       115 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l  194 (279)
                      +..+..+..+++|++|++++|.+.+..+..++..+++|++|++++|.+++. + ....+++|++|++++|.+.+ .+..+
T Consensus       134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~  210 (317)
T 3o53_A          134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEF  210 (317)
T ss_dssp             SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGG
T ss_pred             CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhh
Confidence            766677888999999999999998545555556789999999999999844 3 34458899999999999985 45558


Q ss_pred             CCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCc-ccCCccccCCCCCCeEEccCC-cccccCccc
Q 041953          195 CNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ-GAIPREWGNLTGLGILQLSDN-FLTGITPSS  265 (279)
Q Consensus       195 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~  265 (279)
                      ..+++|+.|++++|.++ .+|..+..+++|+.|++++|++. +..+..+..+++|+.++++++ .+.+..|..
T Consensus       211 ~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~  282 (317)
T 3o53_A          211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE  282 (317)
T ss_dssp             GGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred             cccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence            88999999999999998 57888999999999999999998 677888999999999999955 566665543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.90  E-value=5.3e-23  Score=173.64  Aligned_cols=209  Identities=26%  Similarity=0.365  Sum_probs=131.4

Q ss_pred             CCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcE
Q 041953           50 VHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQY  129 (279)
Q Consensus        50 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  129 (279)
                      ..++++++|++++|.+.+. +. +..+++|++|++++|..... +..+..+++|++|++++|.+....+  +..+++|++
T Consensus       107 ~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~  181 (347)
T 4fmz_A          107 QNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS  181 (347)
T ss_dssp             TTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred             cCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence            4456777777777777643 22 66666677777766644322 2235555556666665555542211  444455555


Q ss_pred             EEeecccccc---------------------ccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccc
Q 041953          130 LDFGFNTLSG---------------------EIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSG  188 (279)
Q Consensus       130 L~l~~n~~~~---------------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  188 (279)
                      |++++|.+..                     .++.  +..+++|++|++++|.+.+ .+. +..+++|++|++++|.+.+
T Consensus       182 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~  257 (347)
T 4fmz_A          182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD  257 (347)
T ss_dssp             EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC
T ss_pred             EEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC
Confidence            5555544431                     2222  3556677777777777663 232 6667777777777777764


Q ss_pred             cCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccc
Q 041953          189 VVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYK  268 (279)
Q Consensus       189 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  268 (279)
                      .  +.+..+++|+.|++++|.+++.  ..+..+++|+.|++++|++.+..+..+..+++|+.|++++|++++..|  +..
T Consensus       258 ~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~  331 (347)
T 4fmz_A          258 I--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS  331 (347)
T ss_dssp             C--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGG
T ss_pred             C--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhh
Confidence            2  4566777788888888877643  356677888888888888877777777888888888888888887766  444


Q ss_pred             ccccc
Q 041953          269 LLFSI  273 (279)
Q Consensus       269 ~~~~~  273 (279)
                      ++.+.
T Consensus       332 l~~L~  336 (347)
T 4fmz_A          332 LSKMD  336 (347)
T ss_dssp             CTTCS
T ss_pred             hhccc
Confidence            44443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.90  E-value=9.1e-23  Score=172.18  Aligned_cols=212  Identities=24%  Similarity=0.293  Sum_probs=160.5

Q ss_pred             CCCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCc
Q 041953           49 DVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQ  128 (279)
Q Consensus        49 ~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~  128 (279)
                      ...++++++|++++|.++. + +.+..+++|++|++++|.+.+ .+. +..+++|++|++++|..... +..+..+++|+
T Consensus        84 ~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~  158 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLN  158 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCC
T ss_pred             hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCccc-ccchhhCCCCc
Confidence            3456799999999999985 3 468999999999999999984 343 88999999999999976533 44588999999


Q ss_pred             EEEeeccccccccChhhhcCCCCCcEEEeecccccccCC--------------------ccCCCCccCcEEeccCCcccc
Q 041953          129 YLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIP--------------------SALSNCAYLQRLGLSSNDFSG  188 (279)
Q Consensus       129 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------------------~~l~~l~~L~~L~l~~n~~~~  188 (279)
                      +|++++|.+. .++.  +..+++|++|++++|.+.+..+                    ..+..+++|++|++++|.+.+
T Consensus       159 ~L~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~  235 (347)
T 4fmz_A          159 YLTVTESKVK-DVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITD  235 (347)
T ss_dssp             EEECCSSCCC-CCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             EEEecCCCcC-Cchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCC
Confidence            9999999987 5444  4678888888888887763221                    013445566677777776664


Q ss_pred             cCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccc
Q 041953          189 VVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYK  268 (279)
Q Consensus       189 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  268 (279)
                      ..+  +..+++|+.|++++|.+++.  ..+..+++|+.|++++|++++.  ..+..+++|+.|++++|++.+..+..++.
T Consensus       236 ~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  309 (347)
T 4fmz_A          236 LSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGG  309 (347)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHT
T ss_pred             Ccc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhc
Confidence            332  66677778888887777642  4567778888888888888744  35778888888999988888888888877


Q ss_pred             cccccc
Q 041953          269 LLFSIK  274 (279)
Q Consensus       269 ~~~~~~  274 (279)
                      ++.+..
T Consensus       310 l~~L~~  315 (347)
T 4fmz_A          310 LTNLTT  315 (347)
T ss_dssp             CTTCSE
T ss_pred             cccCCE
Confidence            766554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=6.6e-24  Score=186.90  Aligned_cols=208  Identities=22%  Similarity=0.158  Sum_probs=173.2

Q ss_pred             CCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcE
Q 041953           50 VHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQY  129 (279)
Q Consensus        50 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  129 (279)
                      ..+++|++|++++|.+++..|  |..+++|++|++++|.+.+. +    ..++|++|++++|.+.+..+.   .+++|+.
T Consensus        55 ~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~  124 (487)
T 3oja_A           55 APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAANNNISRVSCS---RGQGKKN  124 (487)
T ss_dssp             TTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEECCSSCCCCEEEC---CCSSCEE
T ss_pred             hCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEECcCCcCCCCCcc---ccCCCCE
Confidence            456789999999999987655  89999999999999999732 2    348999999999999865443   4588999


Q ss_pred             EEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCC-CCccCcEEeccCCcccccCCcccCCCCCccEEEccCc
Q 041953          130 LDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALS-NCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGN  208 (279)
Q Consensus       130 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n  208 (279)
                      |++++|.+. .++...+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+.+..+  ...+++|+.|++++|
T Consensus       125 L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N  201 (487)
T 3oja_A          125 IYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSN  201 (487)
T ss_dssp             EECCSSCCC-SGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSS
T ss_pred             EECCCCCCC-CCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCC
Confidence            999999998 44444457899999999999999987777775 78999999999999986532  345889999999999


Q ss_pred             ccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCccc-ccCcccccccccc
Q 041953          209 RLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLT-GITPSSIYKLLFS  272 (279)
Q Consensus       209 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~  272 (279)
                      .+++ +|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++.+
T Consensus       202 ~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L  264 (487)
T 3oja_A          202 KLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV  264 (487)
T ss_dssp             CCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred             CCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence            9985 45558889999999999999984 6777999999999999999998 6666666665443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.89  E-value=5.1e-23  Score=183.32  Aligned_cols=209  Identities=24%  Similarity=0.359  Sum_probs=172.8

Q ss_pred             CCCCCCCCCc-----ceeee-eeCCCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcE
Q 041953           32 KNWNTSTPVC-----NWTGV-TCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKY  105 (279)
Q Consensus        32 ~~w~~~~~~c-----~~~~~-~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~  105 (279)
                      ..|......|     .|.++ .|..  .+++.|++++|.+++ +|..+  +++|+.|++++|.+. .+|   ..+++|++
T Consensus        34 ~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~  104 (571)
T 3cvr_A           34 DKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEY  104 (571)
T ss_dssp             HHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCE
T ss_pred             HHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCE
Confidence            3455555666     68888 6753  379999999999986 66655  378999999999998 666   45789999


Q ss_pred             EEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCc
Q 041953          106 VSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSND  185 (279)
Q Consensus       106 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  185 (279)
                      |++++|.+.+ +|. +..  +|++|++++|.+. .+|.    .+++|++|++++|.+++ +|.   .+++|+.|++++|.
T Consensus       105 L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~  171 (571)
T 3cvr_A          105 LDACDNRLST-LPE-LPA--SLKHLDVDNNQLT-MLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQ  171 (571)
T ss_dssp             EECCSSCCSC-CCC-CCT--TCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred             EEccCCCCCC-cch-hhc--CCCEEECCCCcCC-CCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCC
Confidence            9999999995 666 544  9999999999998 5776    58999999999999984 665   56889999999999


Q ss_pred             ccccCCcccCCCCCccEEEccCcccccccCccCCCCCCC-------CEEeccCCcCcccCCccccCCCCCCeEEccCCcc
Q 041953          186 FSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAEL-------ELMSLSENELQGAIPREWGNLTGLGILQLSDNFL  258 (279)
Q Consensus       186 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L-------~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l  258 (279)
                      +.+ +|. +.  ++|+.|++++|.++ .+|. +..  +|       +.|++++|+++ .+|..+..+++|+.|++++|++
T Consensus       172 L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          172 LTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             CSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSC
T ss_pred             CCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcC
Confidence            986 666 65  89999999999998 6666 554  77       99999999998 6788788899999999999999


Q ss_pred             cccCccccccccc
Q 041953          259 TGITPSSIYKLLF  271 (279)
Q Consensus       259 ~~~~~~~~~~~~~  271 (279)
                      ++..|..++.+..
T Consensus       243 ~~~~p~~l~~l~~  255 (571)
T 3cvr_A          243 SSRIRESLSQQTA  255 (571)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHhhc
Confidence            9999998888754

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.89  E-value=3.8e-22  Score=175.02  Aligned_cols=193  Identities=28%  Similarity=0.367  Sum_probs=95.4

Q ss_pred             CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCcc-----------
Q 041953           52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSF-----------  120 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-----------  120 (279)
                      ++++++|++++|.+.+.  ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+...  ..           
T Consensus       176 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  249 (466)
T 1o6v_A          176 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLD  249 (466)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred             CCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEE
Confidence            34555555555555432  224455555555555555543222  33444444444444444321  22           


Q ss_pred             -----------CCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCccccc
Q 041953          121 -----------AFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGV  189 (279)
Q Consensus       121 -----------~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  189 (279)
                                 +..+++|++|++++|.+. .++.  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+.
T Consensus       250 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~  324 (466)
T 1o6v_A          250 LANNQISNLAPLSGLTKLTELKLGANQIS-NISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI  324 (466)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC
T ss_pred             CCCCccccchhhhcCCCCCEEECCCCccC-cccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc
Confidence                       344444555555554444 2222  2445555555555555442211  44455555555555555543


Q ss_pred             CCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCccccc
Q 041953          190 VPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGI  261 (279)
Q Consensus       190 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~  261 (279)
                      .+  +..+++|+.|++++|.+++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++++.
T Consensus       325 ~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          325 SP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             GG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             hh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            32  34455555555555555432  345555666666666666654444  55566666666666666553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.89  E-value=3.3e-22  Score=156.71  Aligned_cols=187  Identities=21%  Similarity=0.256  Sum_probs=135.2

Q ss_pred             CCCcceeeeeeCCCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccC
Q 041953           38 TPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAF  117 (279)
Q Consensus        38 ~~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~  117 (279)
                      ...|.|.++.|..            ++++ .+|..+  .++|++|++++|.+.+..+..|..+++|++|++++|++....
T Consensus         4 ~C~C~~~~v~c~~------------~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~   68 (208)
T 2o6s_A            4 RCSCSGTTVECYS------------QGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP   68 (208)
T ss_dssp             TCEEETTEEECCS------------SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred             CCEECCCEEEecC------------CCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC
Confidence            3557787777753            3343 234333  357888888888888655566778888888888888888555


Q ss_pred             CccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCC
Q 041953          118 PSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNL  197 (279)
Q Consensus       118 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~  197 (279)
                      +..+..+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+
T Consensus        69 ~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l  147 (208)
T 2o6s_A           69 NGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL  147 (208)
T ss_dssp             TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             hhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccC
Confidence            556677888888888888887 6666666778888888888888875555567777888888888888776555567777


Q ss_pred             CCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCC
Q 041953          198 TKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTG  247 (279)
Q Consensus       198 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~  247 (279)
                      ++|+.|++++|.+..       .++.|+.|+++.|++++.+|..++.++.
T Consensus       148 ~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          148 TSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             TTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             CCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence            788888888876542       3456777778888887777777766554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.89  E-value=3.5e-22  Score=175.20  Aligned_cols=204  Identities=25%  Similarity=0.329  Sum_probs=154.2

Q ss_pred             CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953           52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD  131 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  131 (279)
                      .++++.|++++|.+++.  +.+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+.. . +..+++|++|+
T Consensus       220 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~  293 (466)
T 1o6v_A          220 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS-P-LAGLTALTNLE  293 (466)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG-G-GTTCTTCSEEE
T ss_pred             cCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccc-c-ccCCCccCeEE
Confidence            45677777777776642  356778888888888888874433  788899999999999888543 3 78899999999


Q ss_pred             eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc
Q 041953          132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ  211 (279)
Q Consensus       132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~  211 (279)
                      +++|.+. .++.  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.++
T Consensus       294 L~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~  366 (466)
T 1o6v_A          294 LNENQLE-DISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQIS  366 (466)
T ss_dssp             CCSSCCS-CCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             cCCCccc-Cchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccC
Confidence            9999997 5544  4789999999999999986544  77889999999999999864  46888999999999999998


Q ss_pred             cccCccCCCCCCCCEEeccCCcCcccCCcccc-------CCCCCCeEEccCCcccc----cCccccccccc
Q 041953          212 GEIPRESGNLAELELMSLSENELQGAIPREWG-------NLTGLGILQLSDNFLTG----ITPSSIYKLLF  271 (279)
Q Consensus       212 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-------~~~~L~~L~l~~n~l~~----~~~~~~~~~~~  271 (279)
                      +..|  +..+++|+.|++++|++++. |..+.       .+.++....+....++.    ..|..++.++.
T Consensus       367 ~~~~--~~~l~~L~~L~l~~n~~~~~-p~~~~~~~~ip~~~~~~~~~~~~~~~is~~g~~~~~~~~w~~~~  434 (466)
T 1o6v_A          367 DLTP--LANLTRITQLGLNDQAWTNA-PVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS  434 (466)
T ss_dssp             BCGG--GTTCTTCCEEECCCEEEECC-CBCCCSEEEEECCCBCTTSCBCCCSEESTTCEEETTEEEEECCC
T ss_pred             ccch--hhcCCCCCEEeccCCcccCC-chhhcccceecccccccCCCeecCceecCCcEEeCCceEECCCC
Confidence            7766  78899999999999999853 32221       12333444455555543    34555555543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.88  E-value=2.3e-21  Score=169.35  Aligned_cols=195  Identities=24%  Similarity=0.227  Sum_probs=124.0

Q ss_pred             CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953           52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD  131 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  131 (279)
                      ++++++|++++|.+++. +  +..+++|++|++++|.+.+. +  +..+++|++|++++|.+.+ ++  +..+++|++|+
T Consensus        63 l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~  133 (457)
T 3bz5_A           63 LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLN  133 (457)
T ss_dssp             CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred             cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEE
Confidence            34555666666655542 2  55555666666666655532 2  5555666666666665553 22  55556666666


Q ss_pred             eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc
Q 041953          132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ  211 (279)
Q Consensus       132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~  211 (279)
                      +++|.+. .++   +..+++|++|++++|...+.+  .+..+++|+.|++++|.+.+ .|  +..+++|+.|++++|.++
T Consensus       134 l~~N~l~-~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~  204 (457)
T 3bz5_A          134 CARNTLT-EID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNIT  204 (457)
T ss_dssp             CTTSCCS-CCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCS
T ss_pred             CCCCccc-eec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCC
Confidence            6666655 232   245566666666666333233  35566777777777777775 33  667778888888888877


Q ss_pred             cccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccccc
Q 041953          212 GEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL  270 (279)
Q Consensus       212 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  270 (279)
                      +.   .+..+++|+.|++++|++++ +|  +..+++|+.|++++|++++.++..+..+.
T Consensus       205 ~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~  257 (457)
T 3bz5_A          205 KL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLT  257 (457)
T ss_dssp             CC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCC
T ss_pred             ee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCC
Confidence            43   36778888888888888885 45  77888888888888888887766555543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.87  E-value=1.2e-21  Score=153.44  Aligned_cols=182  Identities=23%  Similarity=0.257  Sum_probs=156.6

Q ss_pred             CEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeec
Q 041953           80 QSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQ  159 (279)
Q Consensus        80 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~  159 (279)
                      +.++.+++.+. .+|..+  .++|++|++++|.+....+..+..+++|++|++++|.+. .++...|..+++|++|++++
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCC
Confidence            56777777776 455433  468999999999999666667889999999999999998 78887778999999999999


Q ss_pred             ccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCC
Q 041953          160 NMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIP  239 (279)
Q Consensus       160 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~  239 (279)
                      |.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.    
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----  161 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----  161 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee----
Confidence            9998666667889999999999999999777777889999999999999998776667889999999999999775    


Q ss_pred             ccccCCCCCCeEEccCCcccccCcccccccccc
Q 041953          240 REWGNLTGLGILQLSDNFLTGITPSSIYKLLFS  272 (279)
Q Consensus       240 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  272 (279)
                         ..+++|+.|++..|.+++.+|.+++.+...
T Consensus       162 ---~~~~~l~~L~~~~n~~~g~ip~~~~~l~~~  191 (208)
T 2o6s_A          162 ---CTCPGIRYLSEWINKHSGVVRNSAGSVAPD  191 (208)
T ss_dssp             ---CCTTTTHHHHHHHHHCTTTBBCTTSSBCTT
T ss_pred             ---cCCCCHHHHHHHHHhCCceeeccCccccCC
Confidence               346789999999999999999998887644

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.87  E-value=4.5e-21  Score=167.48  Aligned_cols=196  Identities=20%  Similarity=0.241  Sum_probs=167.5

Q ss_pred             CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953           52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD  131 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  131 (279)
                      ++++++|++++|.+++. | .+..+++|++|++++|.+.+. +  +..+++|++|++++|.+.+. +  +..+++|++|+
T Consensus        41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~  112 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN  112 (457)
T ss_dssp             HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred             cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence            46899999999999864 5 689999999999999999853 3  88999999999999999854 3  88999999999


Q ss_pred             eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc
Q 041953          132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ  211 (279)
Q Consensus       132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~  211 (279)
                      +++|++. .++   +..+++|++|++++|.+++.   .+..+++|++|++++|...+..  .+..+++|+.|++++|.++
T Consensus       113 L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~  183 (457)
T 3bz5_A          113 CDTNKLT-KLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT  183 (457)
T ss_dssp             CCSSCCS-CCC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred             CCCCcCC-eec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence            9999998 565   47899999999999999853   3788999999999999654444  4778899999999999998


Q ss_pred             cccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccccccc
Q 041953          212 GEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSI  273 (279)
Q Consensus       212 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~  273 (279)
                      + +|  +..+++|+.|++++|++++.   .+..+++|+.|++++|.+++++   ++.++.+.
T Consensus       184 ~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~  236 (457)
T 3bz5_A          184 E-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLT  236 (457)
T ss_dssp             C-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCS
T ss_pred             e-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCC
Confidence            5 44  78899999999999999865   4889999999999999999963   55554443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=1.5e-21  Score=162.11  Aligned_cols=184  Identities=20%  Similarity=0.316  Sum_probs=155.7

Q ss_pred             ccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCC
Q 041953           73 LGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFL  152 (279)
Q Consensus        73 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L  152 (279)
                      +..+++|++|++++|.+. .++ .+..+++|++|++++|.+... +. +..+++|++|++++|.+. .++ . +..+++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~-~~~-~-~~~l~~L  109 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLK-NVS-A-IAGLQSI  109 (308)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCS-CCG-G-GTTCTTC
T ss_pred             HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCC-Cch-h-hcCCCCC
Confidence            456789999999999997 444 588899999999999999854 44 889999999999999997 554 3 4789999


Q ss_pred             cEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCC
Q 041953          153 EYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSEN  232 (279)
Q Consensus       153 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  232 (279)
                      ++|++++|.+.+ .+ .+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|
T Consensus       110 ~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          110 KTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN  183 (308)
T ss_dssp             CEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             CEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCC
Confidence            999999999984 44 48899999999999999985443  7889999999999999985433  889999999999999


Q ss_pred             cCcccCCccccCCCCCCeEEccCCcccccCccccccccccc
Q 041953          233 ELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSI  273 (279)
Q Consensus       233 ~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~  273 (279)
                      ++++..+  +..+++|+.|++++|.+++..+  +..++++.
T Consensus       184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~  220 (308)
T 1h6u_A          184 KISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLF  220 (308)
T ss_dssp             CCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCC
T ss_pred             ccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCC
Confidence            9985543  8899999999999999998864  66665544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=1.2e-23  Score=176.78  Aligned_cols=202  Identities=19%  Similarity=0.141  Sum_probs=93.9

Q ss_pred             eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCC-CCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953           54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGS-IPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF  132 (279)
Q Consensus        54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  132 (279)
                      +++.++++++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            455555555555543333 33455555555555555432 4444555555555555555554444444445555555555


Q ss_pred             ecc-ccccccChhhhcCCCCCcEEEeecc-ccccc-CCccCCCCc-cCcEEeccCCc--cc-ccCCcccCCCCCccEEEc
Q 041953          133 GFN-TLSGEIPANICSNLPFLEYLALSQN-MFHGG-IPSALSNCA-YLQRLGLSSND--FS-GVVPKEICNLTKLKGLYL  205 (279)
Q Consensus       133 ~~n-~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~l~~l~-~L~~L~l~~n~--~~-~~~~~~l~~~~~L~~L~l  205 (279)
                      ++| .+.+......+..+++|++|++++| .+++. ++..+..++ +|++|++++|.  ++ +..+..+..+++|+.|++
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l  229 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  229 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence            555 3332111222244555555555555 44422 233344444 55555555552  22 122333344455555555


Q ss_pred             cCcc-cccccCccCCCCCCCCEEeccCCc-CcccCCccccCCCCCCeEEccCC
Q 041953          206 GGNR-LQGEIPRESGNLAELELMSLSENE-LQGAIPREWGNLTGLGILQLSDN  256 (279)
Q Consensus       206 ~~n~-~~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n  256 (279)
                      ++|. +++..+..+..+++|+.|++++|. +.......+.++++|+.|++++|
T Consensus       230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            5555 333334444445555555555552 21111113444445555554444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=3.3e-22  Score=166.29  Aligned_cols=203  Identities=19%  Similarity=0.224  Sum_probs=162.1

Q ss_pred             eEEEEEcCCCCccccCcc---cccCCCCCCEEEccCCcccCCCCccc--cCCCCCcEEEcccCcccccCC----ccCCCC
Q 041953           54 RVTVLNISRLNLTGTIPS---QLGNLSSLQSLNLSCNRLSGSIPSAI--FTTYTLKYVSFRKNQLSGAFP----SFAFNT  124 (279)
Q Consensus        54 ~l~~L~l~~~~l~~~~~~---~~~~l~~L~~L~l~~~~i~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~----~~~~~l  124 (279)
                      +++.+.+.++.+......   .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            567788888776532111   12234679999999999998888887  889999999999999986544    334578


Q ss_pred             CCCcEEEeeccccccccChhhhcCCCCCcEEEeeccccccc--C--CccCCCCccCcEEeccCCcccccCCc----ccCC
Q 041953          125 SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGG--I--PSALSNCAYLQRLGLSSNDFSGVVPK----EICN  196 (279)
Q Consensus       125 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~~~~~~~~----~l~~  196 (279)
                      ++|++|++++|.+. .++...+..+++|++|++++|.+.+.  .  +..+..+++|++|++++|.++. .+.    .+..
T Consensus       145 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~  222 (310)
T 4glp_A          145 PGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA  222 (310)
T ss_dssp             SCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred             cCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence            99999999999997 66666668999999999999987532  2  2334678899999999999873 232    2467


Q ss_pred             CCCccEEEccCcccccccCccCCCC---CCCCEEeccCCcCcccCCccccCCCCCCeEEccCCccccc
Q 041953          197 LTKLKGLYLGGNRLQGEIPRESGNL---AELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGI  261 (279)
Q Consensus       197 ~~~L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~  261 (279)
                      +++|++|++++|.+++..|..+..+   ++|++|++++|+++ .+|..+.  ++|+.|++++|++++.
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~  287 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA  287 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC
Confidence            7899999999999997778777666   69999999999998 6676664  7999999999999986

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=1.4e-23  Score=179.72  Aligned_cols=211  Identities=18%  Similarity=0.200  Sum_probs=115.3

Q ss_pred             CCeEEEEEcCCCC---ccccCcccc-------cCCCCCCEEEccCCcccC----CCCccccCCCCCcEEEcccCcccccC
Q 041953           52 SHRVTVLNISRLN---LTGTIPSQL-------GNLSSLQSLNLSCNRLSG----SIPSAIFTTYTLKYVSFRKNQLSGAF  117 (279)
Q Consensus        52 ~~~l~~L~l~~~~---l~~~~~~~~-------~~l~~L~~L~l~~~~i~~----~~~~~~~~~~~L~~L~l~~n~~~~~~  117 (279)
                      .++|++|++++|.   +.+.+|..+       ..+++|++|++++|.+.+    .++..+..+++|++|++++|.+....
T Consensus        59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~  138 (386)
T 2ca6_A           59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA  138 (386)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred             CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence            4456666666543   222333322       455666666666666654    24445555666666666666654221


Q ss_pred             C----ccCCCC---------CCCcEEEeecccccc-ccCh--hhhcCCCCCcEEEeecccccc-----cCCccCCCCccC
Q 041953          118 P----SFAFNT---------SSLQYLDFGFNTLSG-EIPA--NICSNLPFLEYLALSQNMFHG-----GIPSALSNCAYL  176 (279)
Q Consensus       118 ~----~~~~~l---------~~L~~L~l~~n~~~~-~~~~--~~~~~~~~L~~L~l~~n~l~~-----~~~~~l~~l~~L  176 (279)
                      +    ..+..+         ++|++|++++|++.. .++.  ..+..+++|++|++++|.+..     ..+..+..+++|
T Consensus       139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L  218 (386)
T 2ca6_A          139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL  218 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred             HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc
Confidence            1    112222         566666666666541 2221  223456666666666666542     122255566666


Q ss_pred             cEEeccCCccc----ccCCcccCCCCCccEEEccCcccccc----cCccC--CCCCCCCEEeccCCcCcc----cCCccc
Q 041953          177 QRLGLSSNDFS----GVVPKEICNLTKLKGLYLGGNRLQGE----IPRES--GNLAELELMSLSENELQG----AIPREW  242 (279)
Q Consensus       177 ~~L~l~~n~~~----~~~~~~l~~~~~L~~L~l~~n~~~~~----~~~~~--~~~~~L~~L~l~~n~i~~----~~~~~~  242 (279)
                      +.|++++|.+.    ..++..+..+++|+.|++++|.+++.    ++..+  ..+++|+.|+|++|.+++    .+|..+
T Consensus       219 ~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l  298 (386)
T 2ca6_A          219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI  298 (386)
T ss_dssp             CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred             cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence            66666666664    33455556666666677766666543    33343  235667777777776664    244444


Q ss_pred             -cCCCCCCeEEccCCcccccC
Q 041953          243 -GNLTGLGILQLSDNFLTGIT  262 (279)
Q Consensus       243 -~~~~~L~~L~l~~n~l~~~~  262 (279)
                       .++++|+.|++++|++++..
T Consensus       299 ~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          299 DEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHCTTCCEEECTTSBSCTTS
T ss_pred             HhcCCCceEEEccCCcCCcch
Confidence             44667777777777666655

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=5.7e-23  Score=172.64  Aligned_cols=222  Identities=20%  Similarity=0.222  Sum_probs=168.0

Q ss_pred             CCCeEEEEEcCCCCcccc-CcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccC-cccc-cCCccCCCCCCC
Q 041953           51 HSHRVTVLNISRLNLTGT-IPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKN-QLSG-AFPSFAFNTSSL  127 (279)
Q Consensus        51 ~~~~l~~L~l~~~~l~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n-~~~~-~~~~~~~~l~~L  127 (279)
                      ..+++++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+.+ .++..+..+++|
T Consensus        91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L  170 (336)
T 2ast_B           91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  170 (336)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence            356899999999988755 7777888999999999999888777778888999999999999 5664 245557788999


Q ss_pred             cEEEeecc-ccccccChhhhcCCC-CCcEEEeeccc--cc-ccCCccCCCCccCcEEeccCCc-ccccCCcccCCCCCcc
Q 041953          128 QYLDFGFN-TLSGEIPANICSNLP-FLEYLALSQNM--FH-GGIPSALSNCAYLQRLGLSSND-FSGVVPKEICNLTKLK  201 (279)
Q Consensus       128 ~~L~l~~n-~~~~~~~~~~~~~~~-~L~~L~l~~n~--l~-~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~~~~L~  201 (279)
                      ++|++++| .+.+......+..++ +|++|++++|.  ++ ..++..+..+++|+.|++++|. +++..+..+..+++|+
T Consensus       171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~  250 (336)
T 2ast_B          171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  250 (336)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence            99999999 776432233447788 99999999984  43 2445566778899999999998 6666777888889999


Q ss_pred             EEEccCcc-cccccCccCCCCCCCCEEeccCCcCcccCCccccCC-CCCCeEEccCCcccccCcccccccccccccc
Q 041953          202 GLYLGGNR-LQGEIPRESGNLAELELMSLSENELQGAIPREWGNL-TGLGILQLSDNFLTGITPSSIYKLLFSIKFG  276 (279)
Q Consensus       202 ~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~  276 (279)
                      .|++++|. +.......+..+++|+.|++++| +...   .+..+ ..+..|++++|.+++..|+.++.-.....||
T Consensus       251 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~~~~~~i~g  323 (336)
T 2ast_B          251 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIWG  323 (336)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSSTTCCCBTT
T ss_pred             EeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcccccccceeec
Confidence            99999985 33222235777899999999998 4422   33333 2366677899999999998887754444555

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.85  E-value=6.1e-21  Score=157.15  Aligned_cols=168  Identities=24%  Similarity=0.362  Sum_probs=103.8

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF  132 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  132 (279)
                      ++++.|++++|.+... + .+..+++|++|++++|.+.+.. . +..+++|++|++++|.+.. + +.+..+++|++|++
T Consensus        46 ~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L  119 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK-P-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSL  119 (291)
T ss_dssp             HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEEC
T ss_pred             CcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCc-c-cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEEC
Confidence            4566777777766533 2 3666677777777777766432 2 6666777777777776653 2 23666667777777


Q ss_pred             eccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccccc
Q 041953          133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQG  212 (279)
Q Consensus       133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~  212 (279)
                      ++|.+. .++ . +..+++|++|++++|.+++.  ..+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+++
T Consensus       120 ~~n~i~-~~~-~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          120 EHNGIS-DIN-G-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             TTSCCC-CCG-G-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             CCCcCC-CCh-h-hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence            777665 332 2 35566677777776666532  456666666666666666664333  5566666666666666653


Q ss_pred             ccCccCCCCCCCCEEeccCCcCc
Q 041953          213 EIPRESGNLAELELMSLSENELQ  235 (279)
Q Consensus       213 ~~~~~~~~~~~L~~L~l~~n~i~  235 (279)
                       ++ .+..+++|+.|++++|++.
T Consensus       193 -l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          193 -LR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             -CG-GGTTCTTCSEEEEEEEEEE
T ss_pred             -Ch-hhccCCCCCEEECcCCccc
Confidence             22 3566666666666666665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.85  E-value=1.5e-20  Score=158.86  Aligned_cols=213  Identities=15%  Similarity=0.094  Sum_probs=147.7

Q ss_pred             CCcceeeeeeCCC---------CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCC-ccccCCCCCcE-EE
Q 041953           39 PVCNWTGVTCDVH---------SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIP-SAIFTTYTLKY-VS  107 (279)
Q Consensus        39 ~~c~~~~~~~~~~---------~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~-L~  107 (279)
                      ..|.+..+.|...         .+.+++|+|++|.++.+.+..|.++++|++|++++|.+.+.++ ..|.++++++. +.
T Consensus         7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X            7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            4467777778531         2467888888888886666778888888888888888765444 46777887765 45


Q ss_pred             cccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeec-ccccccCCccCCCCc-cCcEEeccCCc
Q 041953          108 FRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQ-NMFHGGIPSALSNCA-YLQRLGLSSND  185 (279)
Q Consensus       108 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~-~L~~L~l~~n~  185 (279)
                      +..|++....+..+..+++|++|++++|.+. .++...+....++..+++.+ +.+....+..+..+. .++.|++++|.
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~  165 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG  165 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred             ccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence            5667787666777888888888888888887 66665556667777888865 455544444555553 57788888888


Q ss_pred             ccccCCcccCCCCCccEEEccC-cccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCC
Q 041953          186 FSGVVPKEICNLTKLKGLYLGG-NRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDN  256 (279)
Q Consensus       186 ~~~~~~~~l~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n  256 (279)
                      ++...+..+ ...+|+.+++.+ |.++...+..|..+++|+.|++++|+++...+..+   .+|+.|.+.++
T Consensus       166 i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~  233 (350)
T 4ay9_X          166 IQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARST  233 (350)
T ss_dssp             CCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTC
T ss_pred             ccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccC
Confidence            874444333 456788888875 55654444567888888888888888874444333   45555665554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.85  E-value=2.2e-20  Score=169.33  Aligned_cols=207  Identities=22%  Similarity=0.248  Sum_probs=168.9

Q ss_pred             CCeEEEEEcCCCCccc--cCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCC-ccCCCCCCCc
Q 041953           52 SHRVTVLNISRLNLTG--TIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFP-SFAFNTSSLQ  128 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~  128 (279)
                      .+.++.+++++|.+..  ..+..+..+.+|+.+++..+.+. ..+..+..+++|+.+++..++.....+ ..+..+.+++
T Consensus       370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~  448 (635)
T 4g8a_A          370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI  448 (635)
T ss_dssp             CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred             ccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccccc
Confidence            3456667777666542  33444556667777777777665 345567778888888888887664433 4577889999


Q ss_pred             EEEeeccccccccChhhhcCCCCCcEEEeeccccc-ccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccC
Q 041953          129 YLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFH-GGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGG  207 (279)
Q Consensus       129 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  207 (279)
                      .++++.|.+. ..+...+..++.+++|++++|.+. ...|..+..+++|++|++++|.+.+..|..|.++++|++|++++
T Consensus       449 ~l~ls~n~l~-~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~  527 (635)
T 4g8a_A          449 YLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH  527 (635)
T ss_dssp             EEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             cccccccccc-cccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence            9999999997 555566688999999999998754 35678899999999999999999988899999999999999999


Q ss_pred             cccccccCccCCCCCCCCEEeccCCcCcccCCccccCC-CCCCeEEccCCcccc
Q 041953          208 NRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNL-TGLGILQLSDNFLTG  260 (279)
Q Consensus       208 n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~-~~L~~L~l~~n~l~~  260 (279)
                      |.+++..+..+..+++|+.|++++|++++..|..+..+ ++|+.|++++|++.-
T Consensus       528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            99998888889999999999999999999999999988 589999999999864

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=6e-23  Score=175.88  Aligned_cols=222  Identities=17%  Similarity=0.190  Sum_probs=173.2

Q ss_pred             CCeEEEEEcCCCCccccC----cccccCCCCCCEEEccCCccc---CCCCccc-------cCCCCCcEEEcccCcccc--
Q 041953           52 SHRVTVLNISRLNLTGTI----PSQLGNLSSLQSLNLSCNRLS---GSIPSAI-------FTTYTLKYVSFRKNQLSG--  115 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~----~~~~~~l~~L~~L~l~~~~i~---~~~~~~~-------~~~~~L~~L~l~~n~~~~--  115 (279)
                      .+++++|++++|.++...    +..+..+++|++|++++|.+.   +.+|..+       ..+++|++|++++|.+..  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            457999999999998653    345778999999999997543   3445444       688999999999999986  


Q ss_pred             --cCCccCCCCCCCcEEEeeccccccccChhh---hcCC---------CCCcEEEeecccccc-cCC---ccCCCCccCc
Q 041953          116 --AFPSFAFNTSSLQYLDFGFNTLSGEIPANI---CSNL---------PFLEYLALSQNMFHG-GIP---SALSNCAYLQ  177 (279)
Q Consensus       116 --~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~~---------~~L~~L~l~~n~l~~-~~~---~~l~~l~~L~  177 (279)
                        .++..+..+++|++|++++|.+....+..+   +..+         ++|++|++++|.+.. ..+   ..+..+++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence              356677889999999999999863322222   1233         899999999999872 333   4566788999


Q ss_pred             EEeccCCcccc-----cCCcccCCCCCccEEEccCcccc----cccCccCCCCCCCCEEeccCCcCccc----CCccc--
Q 041953          178 RLGLSSNDFSG-----VVPKEICNLTKLKGLYLGGNRLQ----GEIPRESGNLAELELMSLSENELQGA----IPREW--  242 (279)
Q Consensus       178 ~L~l~~n~~~~-----~~~~~l~~~~~L~~L~l~~n~~~----~~~~~~~~~~~~L~~L~l~~n~i~~~----~~~~~--  242 (279)
                      +|++++|.+..     ..+..+..+++|+.|++++|.++    ..+|..+..+++|+.|+|++|.+.+.    ++..+  
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  270 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  270 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence            99999999873     23447788899999999999985    46777888999999999999999765    45566  


Q ss_pred             cCCCCCCeEEccCCcccc----cCcccc-ccccccc
Q 041953          243 GNLTGLGILQLSDNFLTG----ITPSSI-YKLLFSI  273 (279)
Q Consensus       243 ~~~~~L~~L~l~~n~l~~----~~~~~~-~~~~~~~  273 (279)
                      ..+++|+.|++++|.+++    .+|..+ .+++++.
T Consensus       271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~  306 (386)
T 2ca6_A          271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL  306 (386)
T ss_dssp             CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred             ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence            348999999999999999    466665 4344443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.85  E-value=3.3e-20  Score=156.74  Aligned_cols=214  Identities=19%  Similarity=0.139  Sum_probs=168.8

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCC-ccCCCCCCCcE-EEeec
Q 041953           57 VLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFP-SFAFNTSSLQY-LDFGF  134 (279)
Q Consensus        57 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~-L~l~~  134 (279)
                      .++-++++++ .+|..+  .+++++|++++|+|+...+..|.++++|++|++++|++.+.++ ..|..++++.+ +.+..
T Consensus        13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            5677888888 566655  3689999999999995555679999999999999999865555 46788888876 55667


Q ss_pred             cccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccC-CcccccCCcccCCC-CCccEEEccCccccc
Q 041953          135 NTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSS-NDFSGVVPKEICNL-TKLKGLYLGGNRLQG  212 (279)
Q Consensus       135 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~~-~~L~~L~l~~n~~~~  212 (279)
                      |++. .++...|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..+..+ ..++.|++++|.++.
T Consensus        90 N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           90 NNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             TTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             Cccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            8887 88878889999999999999999855555566666788888865 55665555566665 468999999999984


Q ss_pred             ccCccCCCCCCCCEEeccC-CcCcccCCccccCCCCCCeEEccCCcccccCccccccccccccc
Q 041953          213 EIPRESGNLAELELMSLSE-NELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKF  275 (279)
Q Consensus       213 ~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~  275 (279)
                       ++.......+|+.+++++ |.++...+..|.++++|+.|++++|+|+.+++..+..+.++...
T Consensus       169 -i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l  231 (350)
T 4ay9_X          169 -IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR  231 (350)
T ss_dssp             -ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECT
T ss_pred             -CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhc
Confidence             444444567899999975 67775555678999999999999999999988888888776544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.85  E-value=4.1e-20  Score=146.94  Aligned_cols=164  Identities=23%  Similarity=0.297  Sum_probs=118.8

Q ss_pred             CCCCCCCCCcceeeeeeCCCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccC
Q 041953           32 KNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKN  111 (279)
Q Consensus        32 ~~w~~~~~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n  111 (279)
                      ..|......|.|.++.|..            +.++ .+|..+.  ++|+.|++++|.+.+..+..|..+++|++|++++|
T Consensus        10 ~~~~~~~~~Cs~~~v~c~~------------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N   74 (229)
T 3e6j_A           10 SAACPSQCSCSGTTVDCRS------------KRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN   74 (229)
T ss_dssp             -CCCCTTCEEETTEEECTT------------SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             hccCCCCCEEeCCEeEccC------------CCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC
Confidence            5566778999999888853            3333 3444333  67888888888888766777788888888888888


Q ss_pred             cccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCC
Q 041953          112 QLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVP  191 (279)
Q Consensus       112 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  191 (279)
                      .+....+..+..+++|++|++++|.+. .++...|..+++|++|++++|.+. .+|..+..+++|+.|++++|.+....+
T Consensus        75 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~  152 (229)
T 3e6j_A           75 QLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH  152 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred             CCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH
Confidence            887554455677788888888888776 666666677778888888887777 666677777777777777777775555


Q ss_pred             cccCCCCCccEEEccCccccc
Q 041953          192 KEICNLTKLKGLYLGGNRLQG  212 (279)
Q Consensus       192 ~~l~~~~~L~~L~l~~n~~~~  212 (279)
                      ..+..+++|+.|++++|.+..
T Consensus       153 ~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          153 GAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             TTTTTCTTCCEEECTTSCBCT
T ss_pred             HHHhCCCCCCEEEeeCCCccC
Confidence            566677777777777777653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.84  E-value=4.5e-20  Score=145.79  Aligned_cols=153  Identities=18%  Similarity=0.208  Sum_probs=106.8

Q ss_pred             CEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCC-ccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEee
Q 041953           80 QSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFP-SFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS  158 (279)
Q Consensus        80 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  158 (279)
                      +.++++++.+. .+|..+  .+.+++|++++|.+.+..+ ..+..+++|++|++++|.+. .++...|.++++|++|+++
T Consensus        14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECC
Confidence            47788888776 455543  3356778888887775533 34667777777777777776 5555555777777777777


Q ss_pred             cccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcc
Q 041953          159 QNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQG  236 (279)
Q Consensus       159 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~  236 (279)
                      +|.+++..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++..
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            777775555667777777777777777776666667777777777777777776666677777777777777776653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.84  E-value=5.6e-20  Score=145.26  Aligned_cols=152  Identities=22%  Similarity=0.208  Sum_probs=107.1

Q ss_pred             CEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeec
Q 041953           80 QSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQ  159 (279)
Q Consensus        80 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~  159 (279)
                      +.++.+++.+. .+|..+.  ++|+.|++++|.+....+..+..+++|++|++++|.+. .+....|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCC
Confidence            56777777776 5555433  57888888888877655567777778888888887776 55444457777777777777


Q ss_pred             ccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCc
Q 041953          160 NMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ  235 (279)
Q Consensus       160 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~  235 (279)
                      |.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            7777444445667777777777777777666667777777777777777777665566777777777777777664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.83  E-value=2.9e-20  Score=157.73  Aligned_cols=175  Identities=28%  Similarity=0.245  Sum_probs=119.8

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCcccc-CCCCCcEEEcccCcccccCCccCCCCCCCcEEEeecc
Q 041953           57 VLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIF-TTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFN  135 (279)
Q Consensus        57 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  135 (279)
                      .+++++++++ .+|..+.  ..++.|++++|.+.+..+..|. .+++|++|++++|.+....+..+..+++|++|++++|
T Consensus        22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            5777888877 4555443  4688899999988866666666 7888888888888888666667788888888888888


Q ss_pred             ccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCccc---CCCCCccEEEccCccccc
Q 041953          136 TLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEI---CNLTKLKGLYLGGNRLQG  212 (279)
Q Consensus       136 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l---~~~~~L~~L~l~~n~~~~  212 (279)
                      ++. .++...|.++++|++|++++|.+....+..+..+++|+.|++++|.+....+..+   ..+++|+.|++++|.++.
T Consensus        99 ~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           99 HLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             CCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             cCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            876 6666666777888888888877776666677777777777777777764333333   345666666666666653


Q ss_pred             ccCccCCCCCC--CCEEeccCCcCc
Q 041953          213 EIPRESGNLAE--LELMSLSENELQ  235 (279)
Q Consensus       213 ~~~~~~~~~~~--L~~L~l~~n~i~  235 (279)
                      ..+..+..++.  ++.|++++|++.
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCHHHhhhccHhhcceEEecCCCcc
Confidence            33334444444  255666666554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.83  E-value=2.6e-20  Score=167.49  Aligned_cols=171  Identities=25%  Similarity=0.374  Sum_probs=131.1

Q ss_pred             CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953           52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD  131 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  131 (279)
                      +++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.. + +.+..+++|++|+
T Consensus        42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~  115 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKSLS  115 (605)
T ss_dssp             HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCEEE
T ss_pred             CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCEEE
Confidence            4567888888888874 33 57788888888888888875433  7888888888888888874 2 3677888888888


Q ss_pred             eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc
Q 041953          132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ  211 (279)
Q Consensus       132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~  211 (279)
                      +++|.+. .++.  +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..|  +..+++|+.|++++|.+.
T Consensus       116 Ls~N~l~-~l~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          116 LEHNGIS-DING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             CTTSCCC-CCGG--GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ecCCCCC-CCcc--ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            8888886 4432  36788888888888888743  567788888888888888876554  777888888888888887


Q ss_pred             cccCccCCCCCCCCEEeccCCcCccc
Q 041953          212 GEIPRESGNLAELELMSLSENELQGA  237 (279)
Q Consensus       212 ~~~~~~~~~~~~L~~L~l~~n~i~~~  237 (279)
                      +.  ..+..+++|+.|+|++|++.+.
T Consensus       189 ~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          189 DL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             BC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             CC--hHHccCCCCCEEEccCCcCcCC
Confidence            43  3577788888888888887654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.83  E-value=1.3e-19  Score=163.29  Aligned_cols=89  Identities=26%  Similarity=0.337  Sum_probs=64.6

Q ss_pred             ccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEc
Q 041953          174 AYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQL  253 (279)
Q Consensus       174 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l  253 (279)
                      ++|+.|++++|.+++ +|   ..+++|+.|++++|.++ .+|.   .+++|+.|++++|+++ .+|..+.++++|+.|++
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            456666666666653 33   23466777777777776 4444   5578888888888887 66778888899999999


Q ss_pred             cCCcccccCccccccccc
Q 041953          254 SDNFLTGITPSSIYKLLF  271 (279)
Q Consensus       254 ~~n~l~~~~~~~~~~~~~  271 (279)
                      ++|++++..|..+..+..
T Consensus       292 ~~N~l~~~~~~~l~~L~~  309 (622)
T 3g06_A          292 EGNPLSERTLQALREITS  309 (622)
T ss_dssp             CSCCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCcCHHHHHhccc
Confidence            999998888877766643

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.83  E-value=2.7e-22  Score=170.36  Aligned_cols=207  Identities=21%  Similarity=0.186  Sum_probs=109.1

Q ss_pred             eEEEEEcCCCCccccCc----ccccCCC-CCCEEEccCCcccCCCCccccCC-----CCCcEEEcccCcccccCCcc---
Q 041953           54 RVTVLNISRLNLTGTIP----SQLGNLS-SLQSLNLSCNRLSGSIPSAIFTT-----YTLKYVSFRKNQLSGAFPSF---  120 (279)
Q Consensus        54 ~l~~L~l~~~~l~~~~~----~~~~~l~-~L~~L~l~~~~i~~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~---  120 (279)
                      .+++|++++|.+++..+    ..|..++ +|++|++++|.+.+..+..+..+     ++|++|++++|.+.+..+..   
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            46666777666665444    5555666 66667776666665545444443     66666666666665433332   


Q ss_pred             -CCCC-CCCcEEEeeccccccccChhh----hcC-CCCCcEEEeecccccccCC----ccCCCCc-cCcEEeccCCcccc
Q 041953          121 -AFNT-SSLQYLDFGFNTLSGEIPANI----CSN-LPFLEYLALSQNMFHGGIP----SALSNCA-YLQRLGLSSNDFSG  188 (279)
Q Consensus       121 -~~~l-~~L~~L~l~~n~~~~~~~~~~----~~~-~~~L~~L~l~~n~l~~~~~----~~l~~l~-~L~~L~l~~n~~~~  188 (279)
                       +..+ ++|++|++++|.+. ..+...    +.. .++|++|++++|.+.+...    ..+..++ +|++|++++|.+.+
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFS-SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGG-GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHhCCCCccEEECcCCcCC-cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence             2233 56666666666665 332221    122 2466666666666653222    2223333 56666666666654


Q ss_pred             cCCcc----cCCC-CCccEEEccCcccccc----cCccCCC-CCCCCEEeccCCcCcccCC----ccccCCCCCCeEEcc
Q 041953          189 VVPKE----ICNL-TKLKGLYLGGNRLQGE----IPRESGN-LAELELMSLSENELQGAIP----REWGNLTGLGILQLS  254 (279)
Q Consensus       189 ~~~~~----l~~~-~~L~~L~l~~n~~~~~----~~~~~~~-~~~L~~L~l~~n~i~~~~~----~~~~~~~~L~~L~l~  254 (279)
                      ..+..    +... ++|+.|++++|.+.+.    ++..+.. .++|+.|++++|.+.+..+    ..+..+++|+.|+++
T Consensus       182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~  261 (362)
T 3goz_A          182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD  261 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred             hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence            44322    2223 3666666666665531    2223322 2456666666666654332    223445556666666


Q ss_pred             CCccccc
Q 041953          255 DNFLTGI  261 (279)
Q Consensus       255 ~n~l~~~  261 (279)
                      +|.+.++
T Consensus       262 ~n~l~~i  268 (362)
T 3goz_A          262 YDIVKNM  268 (362)
T ss_dssp             HHHHTTC
T ss_pred             cCCcccc
Confidence            6654443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.83  E-value=1.4e-19  Score=142.86  Aligned_cols=151  Identities=22%  Similarity=0.266  Sum_probs=131.0

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccc
Q 041953           57 VLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNT  136 (279)
Q Consensus        57 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  136 (279)
                      .++.++++++ .+|..+.  +.|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus        15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            4566677776 4555443  689999999999986666788899999999999999998878899999999999999999


Q ss_pred             cccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc
Q 041953          137 LSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ  211 (279)
Q Consensus       137 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~  211 (279)
                      +. .++...|.++++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.
T Consensus        92 l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           92 IT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            98 888888889999999999999999777888999999999999999999777778888999999999999875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.82  E-value=4.7e-20  Score=156.46  Aligned_cols=173  Identities=24%  Similarity=0.263  Sum_probs=113.3

Q ss_pred             CCCcceeeeeeCCC---------CCeEEEEEcCCCCccccCccccc-CCCCCCEEEccCCcccCCCCccccCCCCCcEEE
Q 041953           38 TPVCNWTGVTCDVH---------SHRVTVLNISRLNLTGTIPSQLG-NLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVS  107 (279)
Q Consensus        38 ~~~c~~~~~~~~~~---------~~~l~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~  107 (279)
                      ...|.+..+.|...         ...++.|+|++|.+++..+..|. .+++|+.|++++|.+.+..+..|..+++|++|+
T Consensus        15 ~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   94 (361)
T 2xot_A           15 NCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD   94 (361)
T ss_dssp             TCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence            34455555555421         23466777777777766666666 677777777777777755556677777777777


Q ss_pred             cccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccC---CCCccCcEEeccCC
Q 041953          108 FRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSAL---SNCAYLQRLGLSSN  184 (279)
Q Consensus       108 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~l~~n  184 (279)
                      +++|++....+..+..+++|++|++++|.+. .++...|.++++|++|++++|.++...+..+   ..+++|+.|++++|
T Consensus        95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A           95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred             CCCCcCCcCCHHHhCCCcCCCEEECCCCccc-EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence            7777777555556777777777777777776 5555555777777777777777764333333   45677777777777


Q ss_pred             cccccCCcccCCCCC--ccEEEccCcccc
Q 041953          185 DFSGVVPKEICNLTK--LKGLYLGGNRLQ  211 (279)
Q Consensus       185 ~~~~~~~~~l~~~~~--L~~L~l~~n~~~  211 (279)
                      .+....+..+..++.  ++.|++.+|.+.
T Consensus       174 ~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          174 KLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            777544445555554  366777777664

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.82  E-value=1.2e-21  Score=166.35  Aligned_cols=211  Identities=20%  Similarity=0.171  Sum_probs=162.9

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCC----ccccCCC-CCcEEEcccCcccccCCccCCCC-----CC
Q 041953           57 VLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIP----SAIFTTY-TLKYVSFRKNQLSGAFPSFAFNT-----SS  126 (279)
Q Consensus        57 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~----~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~l-----~~  126 (279)
                      ...++.+++++.+|..+...++|++|++++|.+.+..+    ..+..++ +|++|++++|.+.+..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            45788999998888877777779999999999986665    6788888 89999999999986655555543     89


Q ss_pred             CcEEEeeccccccccChhh---hcCC-CCCcEEEeecccccccCCcc----CCC-CccCcEEeccCCcccccCC----cc
Q 041953          127 LQYLDFGFNTLSGEIPANI---CSNL-PFLEYLALSQNMFHGGIPSA----LSN-CAYLQRLGLSSNDFSGVVP----KE  193 (279)
Q Consensus       127 L~~L~l~~n~~~~~~~~~~---~~~~-~~L~~L~l~~n~l~~~~~~~----l~~-l~~L~~L~l~~n~~~~~~~----~~  193 (279)
                      |++|++++|.+.+..+..+   +..+ ++|++|++++|.+++..+..    +.. .++|++|++++|.+.+...    ..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            9999999999974333322   3445 89999999999998655544    334 3689999999999985433    33


Q ss_pred             cCCCC-CccEEEccCcccccccCcc----CCCC-CCCCEEeccCCcCccc----CCccccC-CCCCCeEEccCCcccccC
Q 041953          194 ICNLT-KLKGLYLGGNRLQGEIPRE----SGNL-AELELMSLSENELQGA----IPREWGN-LTGLGILQLSDNFLTGIT  262 (279)
Q Consensus       194 l~~~~-~L~~L~l~~n~~~~~~~~~----~~~~-~~L~~L~l~~n~i~~~----~~~~~~~-~~~L~~L~l~~n~l~~~~  262 (279)
                      +...+ +|+.|++++|.+++..+..    +... ++|+.|+|++|.+.+.    ++..+.. .++|+.|++++|.+++..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            34554 8999999999998655533    3444 5999999999999863    3445555 459999999999999987


Q ss_pred             ccccc
Q 041953          263 PSSIY  267 (279)
Q Consensus       263 ~~~~~  267 (279)
                      +..+.
T Consensus       242 ~~~l~  246 (362)
T 3goz_A          242 LENLK  246 (362)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            74443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.82  E-value=9.9e-19  Score=157.47  Aligned_cols=68  Identities=34%  Similarity=0.436  Sum_probs=48.1

Q ss_pred             CCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccccccccc
Q 041953          198 TKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK  274 (279)
Q Consensus       198 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  274 (279)
                      ++|+.|++++|.+++ +|   ..+++|+.|++++|+++ .+|.   .+++|+.|++++|.++.+ |..+..++++..
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~  288 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRL-PESLIHLSSETT  288 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSC-CGGGGGSCTTCE
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcC-CHHHhhccccCE
Confidence            456777777776663 44   34577888888888887 4444   567899999999998855 667877766544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=1.2e-19  Score=149.52  Aligned_cols=194  Identities=20%  Similarity=0.265  Sum_probs=157.8

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccc
Q 041953           57 VLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNT  136 (279)
Q Consensus        57 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  136 (279)
                      .+.+....+.+.  ..+..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+.. . +..+++|++|++++|.
T Consensus        28 ~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~-~-l~~l~~L~~L~l~~n~  101 (291)
T 1h6t_A           28 KDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIK-P-LANLKNLGWLFLDENK  101 (291)
T ss_dssp             HHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSC
T ss_pred             HHHhcCCCcccc--cchhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCc-c-cccCCCCCEEECCCCc
Confidence            334555555432  234567899999999999974 33 4788999999999999998543 3 8899999999999999


Q ss_pred             cccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCc
Q 041953          137 LSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPR  216 (279)
Q Consensus       137 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~  216 (279)
                      +. .++.  +..+++|++|++++|.+.+ + ..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+++..+ 
T Consensus       102 l~-~~~~--l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-  173 (291)
T 1h6t_A          102 VK-DLSS--LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-  173 (291)
T ss_dssp             CC-CGGG--GTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             CC-CChh--hccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-
Confidence            97 5554  4789999999999999974 3 4688899999999999999854  568889999999999999986544 


Q ss_pred             cCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccc
Q 041953          217 ESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIY  267 (279)
Q Consensus       217 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  267 (279)
                       +..+++|+.|++++|++++ ++ .+..+++|+.|++++|++...+...+.
T Consensus       174 -l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~~~~~~~  221 (291)
T 1h6t_A          174 -LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKPINHQS  221 (291)
T ss_dssp             -GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECCCEECCS
T ss_pred             -hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCCcccccc
Confidence             8889999999999999985 44 489999999999999999876554443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.81  E-value=1.3e-19  Score=140.78  Aligned_cols=154  Identities=16%  Similarity=0.166  Sum_probs=110.4

Q ss_pred             cCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCc
Q 041953           98 FTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQ  177 (279)
Q Consensus        98 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~  177 (279)
                      ..+++|+.|++++|.+. .++ .+..+++|++|++++|.+. .++ . +..+++|++|++++|.+.+..+..+..+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            44556666666666665 334 4566677777777777554 332 2 36678888888888877765667778888888


Q ss_pred             EEeccCCcccccCCcccCCCCCccEEEccCcc-cccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCC
Q 041953          178 RLGLSSNDFSGVVPKEICNLTKLKGLYLGGNR-LQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDN  256 (279)
Q Consensus       178 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n  256 (279)
                      .|++++|.+.+..+..+..+++|+.|++++|. ++ .++ .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence            88888888876667777788888888888887 55 444 67788889999999998874 33 6788889999999998


Q ss_pred             cccc
Q 041953          257 FLTG  260 (279)
Q Consensus       257 ~l~~  260 (279)
                      ++.+
T Consensus       192 ~i~~  195 (197)
T 4ezg_A          192 TIGG  195 (197)
T ss_dssp             ----
T ss_pred             ccCC
Confidence            8764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.81  E-value=2e-19  Score=161.73  Aligned_cols=197  Identities=21%  Similarity=0.288  Sum_probs=146.4

Q ss_pred             EEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeec
Q 041953           55 VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGF  134 (279)
Q Consensus        55 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  134 (279)
                      +..+.+..+.+....+  +..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+.+..+  +..+++|+.|++++
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence            3344455555553322  456778888888888886 333 57788888888888888875433  77888888888888


Q ss_pred             cccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccccccc
Q 041953          135 NTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEI  214 (279)
Q Consensus       135 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~  214 (279)
                      |.+. .++ . +..+++|++|++++|.+.+ + ..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..
T Consensus        97 N~l~-~l~-~-l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~  169 (605)
T 1m9s_A           97 NKIK-DLS-S-LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV  169 (605)
T ss_dssp             SCCC-CCT-T-STTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred             CCCC-CCh-h-hccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence            8886 554 2 4678888888888888874 3 4577788888888888888754  56778888888888888887555


Q ss_pred             CccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccc
Q 041953          215 PRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYK  268 (279)
Q Consensus       215 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  268 (279)
                      |  +..+++|+.|+|++|++.+.  ..+..+++|+.|+|++|++.+.+...+..
T Consensus       170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~  219 (605)
T 1m9s_A          170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSN  219 (605)
T ss_dssp             G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSS
T ss_pred             h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCccccccc
Confidence            4  77888888888888888753  35788888888888888888765544433

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=4.4e-19  Score=140.07  Aligned_cols=153  Identities=18%  Similarity=0.189  Sum_probs=133.8

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCC-ccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeecc
Q 041953           57 VLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIP-SAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFN  135 (279)
Q Consensus        57 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  135 (279)
                      .++++++.++. +|..+.  ..+++|++++|.+.+..+ ..|..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus        15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            67888888874 565553  467899999999986544 45789999999999999999777778999999999999999


Q ss_pred             ccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccc
Q 041953          136 TLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGE  213 (279)
Q Consensus       136 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~  213 (279)
                      .+. .++...|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+...
T Consensus        92 ~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           92 RLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             ccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            998 77777778999999999999999988888999999999999999999988889999999999999999998643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=7.2e-19  Score=139.72  Aligned_cols=154  Identities=22%  Similarity=0.256  Sum_probs=120.2

Q ss_pred             CCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEee
Q 041953           79 LQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS  158 (279)
Q Consensus        79 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  158 (279)
                      -+.++.+++.+. .+|..+  .++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...|..+++|++|+++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECC
Confidence            467888888776 566544  378889999999888777778888888888888888886 7777777788888888888


Q ss_pred             cccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCccc
Q 041953          159 QNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGA  237 (279)
Q Consensus       159 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~  237 (279)
                      +|.+++..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++...
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            88887555566777888888888888887 5667777778888888888888765556677778888888888877643

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.80  E-value=8.1e-19  Score=153.12  Aligned_cols=98  Identities=23%  Similarity=0.297  Sum_probs=62.6

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF  132 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  132 (279)
                      .++++|++++|.+++ +| .+.++++|++|++++|.+.+ +|..   .++|++|++++|.+. .+| .+..+++|++|++
T Consensus       173 ~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l  244 (454)
T 1jl5_A          173 PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYA  244 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEEC
T ss_pred             ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEEC
Confidence            478888888888875 45 57888888888888887763 3332   246777777777766 444 3666677777777


Q ss_pred             eccccccccChhhhcCCCCCcEEEeeccccc
Q 041953          133 GFNTLSGEIPANICSNLPFLEYLALSQNMFH  163 (279)
Q Consensus       133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~  163 (279)
                      ++|++. .+|.    .+++|++|++++|.+.
T Consensus       245 ~~N~l~-~l~~----~~~~L~~L~l~~N~l~  270 (454)
T 1jl5_A          245 DNNLLK-TLPD----LPPSLEALNVRDNYLT  270 (454)
T ss_dssp             CSSCCS-SCCS----CCTTCCEEECCSSCCS
T ss_pred             CCCcCC-cccc----cccccCEEECCCCccc
Confidence            777665 3332    1244444444444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.80  E-value=2.5e-18  Score=150.06  Aligned_cols=195  Identities=27%  Similarity=0.389  Sum_probs=127.3

Q ss_pred             CCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcE
Q 041953           50 VHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQY  129 (279)
Q Consensus        50 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  129 (279)
                      ..++++++|++++|.+++ +|..+   .+|++|++++|.+.+ +| .+..+++|++|++++|.+.+ +|...   ++|++
T Consensus       150 ~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~  219 (454)
T 1jl5_A          150 QNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLES  219 (454)
T ss_dssp             TTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCE
T ss_pred             CCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccE
Confidence            445689999999998885 45433   589999999999884 55 58889999999999998874 44432   58999


Q ss_pred             EEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCC--------------------cccc-
Q 041953          130 LDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSN--------------------DFSG-  188 (279)
Q Consensus       130 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n--------------------~~~~-  188 (279)
                      |++++|.+. .+|.  +..+++|++|++++|.+.+ +|..+   ++|+.|++++|                    .+.+ 
T Consensus       220 L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l  292 (454)
T 1jl5_A          220 IVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKT-LPDLP---PSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL  292 (454)
T ss_dssp             EECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSS-CCSCC---TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEE
T ss_pred             EECcCCcCC-cccc--cCCCCCCCEEECCCCcCCc-ccccc---cccCEEECCCCcccccCcccCcCCEEECcCCccCcc
Confidence            999999887 7774  4789999999999998873 44322   33444444444                    4332 


Q ss_pred             -cCCcccC-------------CC-CCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEc
Q 041953          189 -VVPKEIC-------------NL-TKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQL  253 (279)
Q Consensus       189 -~~~~~l~-------------~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l  253 (279)
                       ..|..+.             .+ ++|+.|++++|.+++ +|..   +++|+.|++++|+++ .+|.   .+++|+.|++
T Consensus       293 ~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L  364 (454)
T 1jl5_A          293 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHV  364 (454)
T ss_dssp             SCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEEC
T ss_pred             cCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEEC
Confidence             1111110             11 244555555555442 2322   356666666666665 3443   3567777788


Q ss_pred             cCCcccc--cCccccccc
Q 041953          254 SDNFLTG--ITPSSIYKL  269 (279)
Q Consensus       254 ~~n~l~~--~~~~~~~~~  269 (279)
                      ++|++++  ..|.++..+
T Consensus       365 ~~N~l~~l~~ip~~l~~L  382 (454)
T 1jl5_A          365 EYNPLREFPDIPESVEDL  382 (454)
T ss_dssp             CSSCCSSCCCCCTTCCEE
T ss_pred             CCCCCCcCCCChHHHHhh
Confidence            8777777  556666655

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.80  E-value=3.8e-22  Score=174.61  Aligned_cols=41  Identities=20%  Similarity=0.208  Sum_probs=21.8

Q ss_pred             CCCCCEEeccCCcCcc----cCCccccCCCCCCeEEccCCccccc
Q 041953          221 LAELELMSLSENELQG----AIPREWGNLTGLGILQLSDNFLTGI  261 (279)
Q Consensus       221 ~~~L~~L~l~~n~i~~----~~~~~~~~~~~L~~L~l~~n~l~~~  261 (279)
                      .++|++|++++|++++    .++..+..+++|++|++++|++++.
T Consensus       369 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          369 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             CCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            3455555555555543    3444455555555555555555544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.79  E-value=1.9e-21  Score=170.16  Aligned_cols=158  Identities=22%  Similarity=0.226  Sum_probs=79.1

Q ss_pred             eEEEEEcCCCCccc----cCcccccCCCCCCEEEccCCcccCCCCcccc-----CCCCCcEEEcccCcccccC----Ccc
Q 041953           54 RVTVLNISRLNLTG----TIPSQLGNLSSLQSLNLSCNRLSGSIPSAIF-----TTYTLKYVSFRKNQLSGAF----PSF  120 (279)
Q Consensus        54 ~l~~L~l~~~~l~~----~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~-----~~~~L~~L~l~~n~~~~~~----~~~  120 (279)
                      ++++|++++|.++.    .++..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+....    +..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            46677777766653    3456666666777777776666533222221     1345666666666655321    333


Q ss_pred             CCCCCCCcEEEeeccccccccChhh----hcCCCCCcEEEeeccccccc----CCccCCCCccCcEEeccCCcccccC--
Q 041953          121 AFNTSSLQYLDFGFNTLSGEIPANI----CSNLPFLEYLALSQNMFHGG----IPSALSNCAYLQRLGLSSNDFSGVV--  190 (279)
Q Consensus       121 ~~~l~~L~~L~l~~n~~~~~~~~~~----~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~--  190 (279)
                      +..+++|++|++++|.+....+..+    ....++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..  
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            4445666666666666542211111    11244566666665555431    2334444555555555555544321  


Q ss_pred             ---CcccCCCCCccEEEccCcccc
Q 041953          191 ---PKEICNLTKLKGLYLGGNRLQ  211 (279)
Q Consensus       191 ---~~~l~~~~~L~~L~l~~n~~~  211 (279)
                         +..+..+++|+.|++++|.++
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~  269 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGIT  269 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             HHHHHHhcCCCCceEEECcCCCCC
Confidence               111223444555555555444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.79  E-value=1.6e-19  Score=146.44  Aligned_cols=169  Identities=20%  Similarity=0.236  Sum_probs=128.6

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF  132 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  132 (279)
                      .+++.++++++.+++..  .+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+.+.. . +..+++|++|++
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~-~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLS-P-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCCh-h-hccCCCCCEEEC
Confidence            35666777888777433  5777888999999988887 444 5778888999999988887443 3 778888888888


Q ss_pred             eccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccccc
Q 041953          133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQG  212 (279)
Q Consensus       133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~  212 (279)
                      ++|++. .++...  . ++|++|++++|.+++ . ..+..+++|+.|++++|.+.+. + .+..+++|+.|++++|.+++
T Consensus        93 ~~N~l~-~l~~~~--~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           93 NRNRLK-NLNGIP--S-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CSSCCS-CCTTCC--C-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred             CCCccC-CcCccc--c-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence            888887 555433  2 888888888888874 3 3577888888888888888754 3 57778888888888888875


Q ss_pred             ccCccCCCCCCCCEEeccCCcCccc
Q 041953          213 EIPRESGNLAELELMSLSENELQGA  237 (279)
Q Consensus       213 ~~~~~~~~~~~L~~L~l~~n~i~~~  237 (279)
                      .  ..+..+++|+.|++++|++...
T Consensus       165 ~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          165 T--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             h--HHhccCCCCCEEeCCCCcccCC
Confidence            4  5677888888888888888644

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=1.1e-18  Score=135.55  Aligned_cols=152  Identities=15%  Similarity=0.182  Sum_probs=82.7

Q ss_pred             CCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcE
Q 041953           75 NLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEY  154 (279)
Q Consensus        75 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  154 (279)
                      .+++|+.|++++|.+. .++ .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+.+..+..+ ..+++|++
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~  116 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLTL  116 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCC-TTCTTCCE
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhh-cCCCCCCE
Confidence            3445555555555554 333 3555555555555555443  12344555566666666655553333333 45566666


Q ss_pred             EEeecccccccCCccCCCCccCcEEeccCCc-ccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCc
Q 041953          155 LALSQNMFHGGIPSALSNCAYLQRLGLSSND-FSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENE  233 (279)
Q Consensus       155 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  233 (279)
                      |++++|.+.+..+..+..+++|++|++++|. +.+ .+ .+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence            6666666554445555566666666666665 442 23 45556666666666666653 22 55566677777777776


Q ss_pred             Cc
Q 041953          234 LQ  235 (279)
Q Consensus       234 i~  235 (279)
                      +.
T Consensus       193 i~  194 (197)
T 4ezg_A          193 IG  194 (197)
T ss_dssp             --
T ss_pred             cC
Confidence            64

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.77  E-value=4.3e-19  Score=143.97  Aligned_cols=148  Identities=22%  Similarity=0.270  Sum_probs=118.6

Q ss_pred             CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953           52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD  131 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  131 (279)
                      .+++++|++++|.++. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|++.+ ++... . ++|++|+
T Consensus        40 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~  112 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLF  112 (263)
T ss_dssp             HTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEE
T ss_pred             cCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCccc-c-CcccEEE
Confidence            4578899999998874 44 688889999999999998844 33 8888999999999998874 44333 2 8899999


Q ss_pred             eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc
Q 041953          132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ  211 (279)
Q Consensus       132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~  211 (279)
                      +++|.+. .++.  +..+++|++|++++|.+++. + .+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.
T Consensus       113 L~~N~l~-~~~~--l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          113 LDNNELR-DTDS--LIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             CCSSCCS-BSGG--GTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             ccCCccC-CChh--hcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence            9999887 5543  47889999999999998743 3 678888999999999998865  66788889999999999887


Q ss_pred             cc
Q 041953          212 GE  213 (279)
Q Consensus       212 ~~  213 (279)
                      ..
T Consensus       186 ~~  187 (263)
T 1xeu_A          186 NE  187 (263)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.76  E-value=2.7e-20  Score=171.04  Aligned_cols=203  Identities=22%  Similarity=0.241  Sum_probs=87.6

Q ss_pred             CCCChhHHHHHHHHHHhccCCCcccccCCC-CCCCCCcceeeeeeCCCCCeEEEEEcCCCCccccCcccccCCCCCCEE-
Q 041953            5 TSTITTDRDALLALKAHITHDPTNFFAKNW-NTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSL-   82 (279)
Q Consensus         5 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w-~~~~~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L-   82 (279)
                      .+..+.+..++..+...+. .+.+.....| ..+.....|.+..+..  ++++.|++.++.+.. .+..+-....|+.+ 
T Consensus       127 ~s~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~  202 (727)
T 4b8c_D          127 KSLVDCTKQALMEMADTLT-DSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDE-ANQALLQHKKLSQYS  202 (727)
T ss_dssp             -----CCCHHHHHHHHHHH-HHHTTC------------------------------------------------------
T ss_pred             hhccccchhhhhhhhhhcc-cccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCc-chhhHhhcCccCccc
Confidence            3445667788888887764 2222222445 3334556677666543  467777777776653 22222222222222 


Q ss_pred             ----EccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEee
Q 041953           83 ----NLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS  158 (279)
Q Consensus        83 ----~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  158 (279)
                          ++..|.+. ..++.+..+++|+.|+|++|.+. .++..+..+++|++|+|++|.+. .+|..+ .++++|++|+|+
T Consensus       203 i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls  278 (727)
T 4b8c_D          203 IDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI-KNLSNLRVLDLS  278 (727)
T ss_dssp             --------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG-GGGTTCCEEECT
T ss_pred             ccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh-hCCCCCCEEeCc
Confidence                22223332 34555666667777777777666 55555556677777777777666 666554 566777777777


Q ss_pred             cccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCcc
Q 041953          159 QNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRE  217 (279)
Q Consensus       159 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~  217 (279)
                      +|.++ .+|..+..+++|++|+|++|.+. .+|..+..+++|+.|++++|.+++.+|..
T Consensus       279 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~  335 (727)
T 4b8c_D          279 HNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKI  335 (727)
T ss_dssp             TSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred             CCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHH
Confidence            77766 55666666667777777777665 45555666667777777777666544443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.76  E-value=3.1e-18  Score=152.60  Aligned_cols=167  Identities=27%  Similarity=0.359  Sum_probs=141.1

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF  132 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  132 (279)
                      +++++|++++|.++ .+|   ..+++|+.|++++|.+++ +|. +..  +|++|++++|.+.+ +|.   .+++|++|++
T Consensus        80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L  147 (571)
T 3cvr_A           80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA  147 (571)
T ss_dssp             TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred             CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence            57999999999998 566   457899999999999985 676 554  99999999999985 566   6899999999


Q ss_pred             eccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCc-------cEEEc
Q 041953          133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKL-------KGLYL  205 (279)
Q Consensus       133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L-------~~L~l  205 (279)
                      ++|.+. .+|.    .+++|++|++++|.+++ +|. +.  ++|+.|++++|.++ .+|. +..  +|       +.|++
T Consensus       148 s~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~L  214 (571)
T 3cvr_A          148 DNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRC  214 (571)
T ss_dssp             CSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEEC
T ss_pred             CCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEec
Confidence            999998 5775    57899999999999985 666 65  89999999999998 5665 554  67       99999


Q ss_pred             cCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCC
Q 041953          206 GGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNL  245 (279)
Q Consensus       206 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~  245 (279)
                      ++|.++ .+|..+..+++|+.|+|++|++++..|..+..+
T Consensus       215 s~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          215 RENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             CCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            999998 678888889999999999999998888776654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=2.5e-17  Score=127.24  Aligned_cols=130  Identities=25%  Similarity=0.290  Sum_probs=95.4

Q ss_pred             cEEEcccCcccccCCccCCCCCCCcEEEeeccccccccCh-hhhcCCCCCcEEEeecccccccCCccCCCCccCcEEecc
Q 041953          104 KYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPA-NICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLS  182 (279)
Q Consensus       104 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  182 (279)
                      +.++++++.+. .+|..+..  ++++|++++|.+. .++. ..+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCC-ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            67788888776 55654432  7788888888776 4443 345677888888888888776667777777788888888


Q ss_pred             CCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCccc
Q 041953          183 SNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGA  237 (279)
Q Consensus       183 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~  237 (279)
                      +|.+.+..+..+..+++|+.|++++|.+++..|..+..+++|++|++++|++...
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            8877766666677777788888888877777777777777788888877777644

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=1.8e-17  Score=138.74  Aligned_cols=219  Identities=15%  Similarity=0.089  Sum_probs=141.6

Q ss_pred             CCeEEEEEcCCCCcc--------------------ccCcccccC--------CCCCCEEEccCCcccCCCCccccCCCCC
Q 041953           52 SHRVTVLNISRLNLT--------------------GTIPSQLGN--------LSSLQSLNLSCNRLSGSIPSAIFTTYTL  103 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~--------------------~~~~~~~~~--------l~~L~~L~l~~~~i~~~~~~~~~~~~~L  103 (279)
                      .++|+.|+|++|.+.                    .+...+|.+        +++|+.|+++. .+......+|.+|++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            457889999988877                    222334455        56666666665 5544444556666666


Q ss_pred             cEEEcccCcccccCCccCCCCCCCcEEEeeccccc---cccChhhhcCCCCCc--------------------------E
Q 041953          104 KYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLS---GEIPANICSNLPFLE--------------------------Y  154 (279)
Q Consensus       104 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~---~~~~~~~~~~~~~L~--------------------------~  154 (279)
                      +.+++.+|.+....+..|..+.++..+........   ..+....|.++..|+                          .
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~  206 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF  206 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence            66666666555444444555444444433321110   011112222222232                          2


Q ss_pred             EEeecccccccCCccC-CCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCC-EEeccCC
Q 041953          155 LALSQNMFHGGIPSAL-SNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELE-LMSLSEN  232 (279)
Q Consensus       155 L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n  232 (279)
                      +.+.++-.. .....+ ..+++|+.+++++|.+.......|.++.+|+.+++.+| ++...+..|.++++|+ .+++.+ 
T Consensus       207 l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-  283 (329)
T 3sb4_A          207 LTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-  283 (329)
T ss_dssp             EEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred             EEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence            222111000 000000 12678999999999998777788999999999999998 6667778899999999 999998 


Q ss_pred             cCcccCCccccCCCCCCeEEccCCcccccCcccccccccccc
Q 041953          233 ELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK  274 (279)
Q Consensus       233 ~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  274 (279)
                      +++.+.+.+|.+|++|+.+++.+|.++.+.+.+|.++++++.
T Consensus       284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~  325 (329)
T 3sb4_A          284 SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL  325 (329)
T ss_dssp             TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred             cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence            777677889999999999999999999999999999987764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=2.2e-20  Score=166.85  Aligned_cols=183  Identities=19%  Similarity=0.154  Sum_probs=150.9

Q ss_pred             cCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCc-------------ccccCCccCCCCCCCcEEE-eecccccc
Q 041953           74 GNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQ-------------LSGAFPSFAFNTSSLQYLD-FGFNTLSG  139 (279)
Q Consensus        74 ~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~-------------~~~~~~~~~~~l~~L~~L~-l~~n~~~~  139 (279)
                      ..++.|+.|++++|.+. .+|..+..+++|+.|++++|.             ..+..|..+..+++|+.|+ ++.|.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            56788999999999997 789999999999999987664             3345556667778888887 5655443 


Q ss_pred             ccChhhh-----c--CCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccccc
Q 041953          140 EIPANIC-----S--NLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQG  212 (279)
Q Consensus       140 ~~~~~~~-----~--~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~  212 (279)
                      .++...+     .  ....|+.|++++|.++ .+|. +..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++
T Consensus       424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~  500 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN  500 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             hhhhhhhhcccccccCccCceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence            2222110     0  1235899999999998 4675 899999999999999999 788899999999999999999985


Q ss_pred             ccCccCCCCCCCCEEeccCCcCcccC-CccccCCCCCCeEEccCCcccccCc
Q 041953          213 EIPRESGNLAELELMSLSENELQGAI-PREWGNLTGLGILQLSDNFLTGITP  263 (279)
Q Consensus       213 ~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~  263 (279)
                       +| .+..+++|+.|+|++|++++.. |..+..+++|+.|++++|++++.+|
T Consensus       501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence             66 8999999999999999999776 8999999999999999999999876

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=3.3e-17  Score=137.15  Aligned_cols=77  Identities=17%  Similarity=0.047  Sum_probs=69.1

Q ss_pred             CCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCC-eEEccCCcccccCccccccccccccc
Q 041953          197 LTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLG-ILQLSDNFLTGITPSSIYKLLFSIKF  275 (279)
Q Consensus       197 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~~~~~~~~  275 (279)
                      +++|+.+++++|.++...+..|.++++|+.+++.+| ++.+.+.+|.+|++|+ .+++.+ .++.+.+.+|..|..+...
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            679999999999998777788999999999999998 7777788999999999 999998 8999999999999776653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.71  E-value=3.6e-17  Score=123.54  Aligned_cols=133  Identities=23%  Similarity=0.173  Sum_probs=66.3

Q ss_pred             CCcEEEeeccccc-cccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEE
Q 041953          126 SLQYLDFGFNTLS-GEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLY  204 (279)
Q Consensus       126 ~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~  204 (279)
                      +|++|++++|.+. +.+|..+ ..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+..|..+..+++|+.|+
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCC-GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             cCCEEECCCCCCChhhHHHHH-HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            3444444444433 2333221 3344444444444444422  3444455555555555555443444444455555555


Q ss_pred             ccCccccccc-CccCCCCCCCCEEeccCCcCcccCC---ccccCCCCCCeEEccCCccccc
Q 041953          205 LGGNRLQGEI-PRESGNLAELELMSLSENELQGAIP---REWGNLTGLGILQLSDNFLTGI  261 (279)
Q Consensus       205 l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~~n~l~~~  261 (279)
                      +++|.+++.. +..+..+++|+.|++++|++++..+   ..+..+++|+.|++++|.+...
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            5555554321 1455556666666666666654333   3556666666666666665554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.70  E-value=1.4e-16  Score=123.08  Aligned_cols=127  Identities=24%  Similarity=0.244  Sum_probs=87.4

Q ss_pred             cEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccC
Q 041953          104 KYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSS  183 (279)
Q Consensus       104 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  183 (279)
                      +.++++++.+. .+|..+  .++|++|++++|.+. .+|. .|.++++|++|++++|.+++..+..|..+++|++|++++
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            46777777776 455443  256777777777776 6664 346777777777777777755556677777777777777


Q ss_pred             CcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCc
Q 041953          184 NDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ  235 (279)
Q Consensus       184 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~  235 (279)
                      |.+....+..|..+++|+.|++++|.++...+..+..+++|+.|++++|++.
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            7777666666777777777777777776555555666777777777777664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=3e-20  Score=166.01  Aligned_cols=194  Identities=23%  Similarity=0.213  Sum_probs=155.2

Q ss_pred             CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCc-------------ccCCCCccccCCCCCcEEE-cccCcccccC
Q 041953           52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNR-------------LSGSIPSAIFTTYTLKYVS-FRKNQLSGAF  117 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-------------i~~~~~~~~~~~~~L~~L~-l~~n~~~~~~  117 (279)
                      .+.++.|++++|.++ .+|..++++++|+.|++++|.             ..+..|..+..+++|+.|+ ++.|.+.. +
T Consensus       348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~-L  425 (567)
T 1dce_A          348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD-L  425 (567)
T ss_dssp             TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH-H
T ss_pred             CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch-h
Confidence            345667888888887 679999999999999997664             3445667778888888888 55553321 0


Q ss_pred             Cc------cCC--CCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCccccc
Q 041953          118 PS------FAF--NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGV  189 (279)
Q Consensus       118 ~~------~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  189 (279)
                      +.      .+.  ....|+.|++++|.+. .+|.  +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++ 
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-  500 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-  500 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCC-CCcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence            00      000  1135899999999998 6776  588999999999999999 889999999999999999999995 


Q ss_pred             CCcccCCCCCccEEEccCccccccc-CccCCCCCCCCEEeccCCcCcccCCc---cccCCCCCCeEEc
Q 041953          190 VPKEICNLTKLKGLYLGGNRLQGEI-PRESGNLAELELMSLSENELQGAIPR---EWGNLTGLGILQL  253 (279)
Q Consensus       190 ~~~~l~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~---~~~~~~~L~~L~l  253 (279)
                      +| .+..+++|+.|++++|.+++.. |..+..+++|+.|+|++|++++..|.   .+..+++|+.|++
T Consensus       501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            56 7899999999999999999776 89999999999999999999866553   2345889998864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=2.2e-18  Score=158.42  Aligned_cols=182  Identities=24%  Similarity=0.276  Sum_probs=123.2

Q ss_pred             cCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhc
Q 041953           68 TIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICS  147 (279)
Q Consensus        68 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  147 (279)
                      ..+..|..+..|+.|++++|.+. .++..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..+ .
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~  290 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL-G  290 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG-G
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh-c
Confidence            45778899999999999999998 77877889999999999999999 88999999999999999999998 888776 7


Q ss_pred             CCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCC-CccEEEccCcccccccCccCCCCCCCCE
Q 041953          148 NLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLT-KLKGLYLGGNRLQGEIPRESGNLAELEL  226 (279)
Q Consensus       148 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~  226 (279)
                      ++++|++|++++|.+. .+|..|..+++|+.|+|++|.+.+..|..+.... ....+++++|.+++.+|.      .|..
T Consensus       291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~  363 (727)
T 4b8c_D          291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRF  363 (727)
T ss_dssp             GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---
T ss_pred             CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccce
Confidence            8999999999999998 7788899999999999999999987777665432 223477889998876664      4556


Q ss_pred             EeccCC--------cCcccCCccccCCCCCCeEEccCCcccc
Q 041953          227 MSLSEN--------ELQGAIPREWGNLTGLGILQLSDNFLTG  260 (279)
Q Consensus       227 L~l~~n--------~i~~~~~~~~~~~~~L~~L~l~~n~l~~  260 (279)
                      |+++.|        .+.+..+..+..+..+....+++|-+.+
T Consensus       364 l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~  405 (727)
T 4b8c_D          364 IEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ  405 (727)
T ss_dssp             --------------------------------------CCCG
T ss_pred             eEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence            667666        3333334445566677777888887753

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=1.8e-16  Score=122.36  Aligned_cols=131  Identities=21%  Similarity=0.226  Sum_probs=107.2

Q ss_pred             CEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCc-cCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEee
Q 041953           80 QSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPS-FAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS  158 (279)
Q Consensus        80 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  158 (279)
                      +.++++++.+. .+|..+.  .+|++|++++|.+.+..+. .+..+++|++|++++|.+. .++...|.++++|++|+++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC-CcCHhHcCCcccCCEEECC
Confidence            67889888886 6666443  3899999999998855554 4788899999999999987 5544555889999999999


Q ss_pred             cccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccccccc
Q 041953          159 QNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEI  214 (279)
Q Consensus       159 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~  214 (279)
                      +|.+++..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+....
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            99998777777888899999999999998888888888899999999999887543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.69  E-value=2.7e-16  Score=119.73  Aligned_cols=131  Identities=24%  Similarity=0.240  Sum_probs=69.8

Q ss_pred             cEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccC
Q 041953          128 QYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGG  207 (279)
Q Consensus       128 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  207 (279)
                      +.++++++.+. .+|...   .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus        10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            34444444443 444322   24455555555555533333445555555555555555544444455555666666666


Q ss_pred             cccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccC
Q 041953          208 NRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGIT  262 (279)
Q Consensus       208 n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~  262 (279)
                      |.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            6655444444555666666666666665444444555666666666666665543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.69  E-value=2e-16  Score=119.43  Aligned_cols=131  Identities=20%  Similarity=0.171  Sum_probs=69.1

Q ss_pred             CCCCEEEccCCccc-CCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEE
Q 041953           77 SSLQSLNLSCNRLS-GSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYL  155 (279)
Q Consensus        77 ~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  155 (279)
                      ++|++|++++|.+. +.+|..+..+++|++|++++|.+...  ..+..+++|++|++++|.+.+.+|. .+..+++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhCCCCCEE
Confidence            55666666666665 45555556666666666666666533  5555666666666666666532333 22446666666


Q ss_pred             EeecccccccC-CccCCCCccCcEEeccCCcccccCC---cccCCCCCccEEEccCccc
Q 041953          156 ALSQNMFHGGI-PSALSNCAYLQRLGLSSNDFSGVVP---KEICNLTKLKGLYLGGNRL  210 (279)
Q Consensus       156 ~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~n~~  210 (279)
                      ++++|.+++.. +..+..+++|+.|++++|.+.+..+   ..+..+++|+.|++++|.+
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            66666555221 1344444555555555554443222   1334444444444444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.67  E-value=7.8e-16  Score=118.86  Aligned_cols=127  Identities=22%  Similarity=0.281  Sum_probs=102.2

Q ss_pred             EEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeecc
Q 041953           56 TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFN  135 (279)
Q Consensus        56 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  135 (279)
                      +.++++++.++ .+|..+.  ++|++|++++|.+. .+|..|..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            35778888887 4555443  68999999999998 67788889999999999999998776777888899999999999


Q ss_pred             ccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCccc
Q 041953          136 TLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFS  187 (279)
Q Consensus       136 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  187 (279)
                      .+. .++...|..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus        89 ~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            887 666666688888888888888888555556777888888888888765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.65  E-value=1.2e-16  Score=118.22  Aligned_cols=126  Identities=20%  Similarity=0.173  Sum_probs=59.9

Q ss_pred             eEEEEEcCCCCcc-ccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953           54 RVTVLNISRLNLT-GTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF  132 (279)
Q Consensus        54 ~l~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  132 (279)
                      +++.|++++|.++ +.+|..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+.+|..+           
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~-----------   84 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA-----------   84 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH-----------
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh-----------
Confidence            4555555555554 34444445555555555555555422  334444455555555554443333333           


Q ss_pred             eccccccccChhhhcCCCCCcEEEeeccccccc-CCccCCCCccCcEEeccCCcccccCC---cccCCCCCccEEEcc
Q 041953          133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGG-IPSALSNCAYLQRLGLSSNDFSGVVP---KEICNLTKLKGLYLG  206 (279)
Q Consensus       133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~  206 (279)
                                    ..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+..+   ..+..+++|+.|+++
T Consensus        85 --------------~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           85 --------------EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             --------------HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             --------------hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence                          3445555555555554421 12344445555555555555543332   234445555555543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.64  E-value=1.6e-16  Score=117.45  Aligned_cols=127  Identities=20%  Similarity=0.204  Sum_probs=60.1

Q ss_pred             CCCcEEEcccCccc-ccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEE
Q 041953          101 YTLKYVSFRKNQLS-GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRL  179 (279)
Q Consensus       101 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  179 (279)
                      ++|+.|++++|.+. +.+|..+..+++|++|++++|.+. .+  ..+..+++|++|++++|.+.+..|..+         
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~---------   84 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI--ANLPKLNKLKKLELSDNRVSGGLEVLA---------   84 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC--TTCCCCTTCCEEECCSSCCCSCTHHHH---------
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc--hhhhcCCCCCEEECCCCcccchHHHHh---------
Confidence            34455555555444 334444444445555555544443 22  122344445555555444443333333         


Q ss_pred             eccCCcccccCCcccCCCCCccEEEccCcccccc-cCccCCCCCCCCEEeccCCcCcccCC---ccccCCCCCCeEEcc
Q 041953          180 GLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGE-IPRESGNLAELELMSLSENELQGAIP---REWGNLTGLGILQLS  254 (279)
Q Consensus       180 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~  254 (279)
                                     ..+++|+.|++++|.+++. .+..+..+++|++|++++|++++..+   ..+..+++|+.|+++
T Consensus        85 ---------------~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           85 ---------------EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ---------------HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ---------------hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence                           3344455555555554432 12445555555666666555554433   345555666666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.64  E-value=9.5e-15  Score=125.20  Aligned_cols=207  Identities=13%  Similarity=0.092  Sum_probs=141.6

Q ss_pred             eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEee
Q 041953           54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFG  133 (279)
Q Consensus        54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  133 (279)
                      +|+.+.+.. .+..+...+|.++.+|+.++++.|.+.......|. +.+|+.+.+..+ +.......|..+++|+.+++.
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence            355555554 44445555666666666666666666533333333 566666666533 444445566677777777776


Q ss_pred             ccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCccc-----ccCCcccCCCCCccEEEccCc
Q 041953          134 FNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFS-----GVVPKEICNLTKLKGLYLGGN  208 (279)
Q Consensus       134 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-----~~~~~~l~~~~~L~~L~l~~n  208 (279)
                      .+ +. .+....|.+ .+|+.+.+.. .+......+|..+++|+.+.+.++.+.     .....+|.++++|+.+.+.+ 
T Consensus       235 ~~-l~-~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-  309 (401)
T 4fdw_A          235 EN-VS-TIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-  309 (401)
T ss_dssp             TT-CC-EECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred             CC-cc-Ccccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence            54 33 566666665 6677777743 344455677888888999888877654     35567788888899998884 


Q ss_pred             ccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccccc
Q 041953          209 RLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL  270 (279)
Q Consensus       209 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  270 (279)
                      .++......|.++.+|+.+.|..+ ++.+...+|.++ +|+.+++.+|.+....+..|..++
T Consensus       310 ~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~  369 (401)
T 4fdw_A          310 SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP  369 (401)
T ss_dssp             TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred             ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence            466566778888899999999655 665667788888 999999999988888887777764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=4e-15  Score=113.19  Aligned_cols=127  Identities=22%  Similarity=0.255  Sum_probs=80.9

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccc
Q 041953           57 VLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNT  136 (279)
Q Consensus        57 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  136 (279)
                      .+++++++++ .+|..+  .++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus        11 ~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             EEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            3444555555 334333  2577888888887775555556777777777777777775544556677777777777777


Q ss_pred             cccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCccc
Q 041953          137 LSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFS  187 (279)
Q Consensus       137 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  187 (279)
                      +. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus        88 l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           88 LQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            76 555555566677777777777666443344556666666666666655

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.61  E-value=1.4e-15  Score=115.74  Aligned_cols=131  Identities=18%  Similarity=0.145  Sum_probs=71.4

Q ss_pred             ccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCC
Q 041953           73 LGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFL  152 (279)
Q Consensus        73 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L  152 (279)
                      +.++.+|+.|++++|.+. .++......++|++|++++|.+.+.  ..+..+++|++|++++|.+. .++...+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCC
Confidence            445566666666666666 3333222233666666666666643  45556666666666666665 5555554556666


Q ss_pred             cEEEeecccccccCCc--cCCCCccCcEEeccCCcccccCCc----ccCCCCCccEEEccCcc
Q 041953          153 EYLALSQNMFHGGIPS--ALSNCAYLQRLGLSSNDFSGVVPK----EICNLTKLKGLYLGGNR  209 (279)
Q Consensus       153 ~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~----~l~~~~~L~~L~l~~n~  209 (279)
                      ++|++++|.+. .++.  .+..+++|+.|++++|.+.. .|.    .+..+++|+.|++++|.
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECC
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCC
Confidence            66666666664 3333  44455555555555555542 222    13344444444444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.60  E-value=9.5e-16  Score=116.61  Aligned_cols=106  Identities=16%  Similarity=0.142  Sum_probs=60.8

Q ss_pred             CCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCc--cCCCCCCCCEEe
Q 041953          151 FLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPR--ESGNLAELELMS  228 (279)
Q Consensus       151 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~  228 (279)
                      +|++|++++|.+++.  ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+|.  .+..+++|+.|+
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence            555555555555432  34555556666666666665433333355666666666666664 3333  555666677777


Q ss_pred             ccCCcCcccCCc----cccCCCCCCeEEccCCcccc
Q 041953          229 LSENELQGAIPR----EWGNLTGLGILQLSDNFLTG  260 (279)
Q Consensus       229 l~~n~i~~~~~~----~~~~~~~L~~L~l~~n~l~~  260 (279)
                      +++|++. ..|.    .+..+++|+.|++++|.+..
T Consensus       120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            7777665 3343    36666777777777766544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.60  E-value=3.6e-14  Score=121.57  Aligned_cols=208  Identities=13%  Similarity=0.095  Sum_probs=157.5

Q ss_pred             eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEee
Q 041953           54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFG  133 (279)
Q Consensus        54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  133 (279)
                      +++.+.+..+ ++.+...+|.++ +|+.+.+.. .+......+|..|++|+.+++.+|++.......| ...+|+.+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF-~~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF-VYAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT-TTCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhE-eecccCEEEeC
Confidence            4666777655 555666677774 688888876 5554566788888899999998888874444444 46888888887


Q ss_pred             ccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc--
Q 041953          134 FNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ--  211 (279)
Q Consensus       134 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~--  211 (279)
                      .+ +. .++...|.++++|+.+++..+ +......+|.. .+|+.+.+. +.+......+|.++++|+.+.+.++.+.  
T Consensus       212 ~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~  286 (401)
T 4fdw_A          212 VT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDD  286 (401)
T ss_dssp             TT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred             Cc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCC
Confidence            54 54 788888888999999999875 44345566766 678888884 4455566788899999999999887764  


Q ss_pred             ---cccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccccccc
Q 041953          212 ---GEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSI  273 (279)
Q Consensus       212 ---~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~  273 (279)
                         ...+..|.++++|+.+++.+ .++.+...+|.+|++|+.+.+.. .++.+.+.+|..+ .+.
T Consensus       287 ~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~  348 (401)
T 4fdw_A          287 PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIK  348 (401)
T ss_dssp             TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCC
T ss_pred             cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCC
Confidence               35667889999999999994 57767778899999999999955 4888888888888 544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.59  E-value=3.1e-17  Score=147.80  Aligned_cols=212  Identities=14%  Similarity=0.122  Sum_probs=119.3

Q ss_pred             eEEEEEcCCCCccccCc-ccccCCCCCCEEEccCCcccC-CCCccccCCCCCcEEEccc-----------Cccccc-CCc
Q 041953           54 RVTVLNISRLNLTGTIP-SQLGNLSSLQSLNLSCNRLSG-SIPSAIFTTYTLKYVSFRK-----------NQLSGA-FPS  119 (279)
Q Consensus        54 ~l~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~-----------n~~~~~-~~~  119 (279)
                      ++++|++++|.+++... ..+..+++|++|+++ +.+.+ ..+..+..+++|++|++++           +.++.. +..
T Consensus       294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~  372 (592)
T 3ogk_B          294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA  372 (592)
T ss_dssp             GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred             CCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence            45555555555432211 223445555555555 22221 1222223455566666662           233211 111


Q ss_pred             cCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEee----ccccccc-----CCccCCCCccCcEEeccCCc--ccc
Q 041953          120 FAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS----QNMFHGG-----IPSALSNCAYLQRLGLSSND--FSG  188 (279)
Q Consensus       120 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~----~n~l~~~-----~~~~l~~l~~L~~L~l~~n~--~~~  188 (279)
                      ....+++|++|+++.+.+.+..+..+...+++|+.|++.    .+.+++.     ++..+..+++|+.|+++.|.  +.+
T Consensus       373 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~  452 (592)
T 3ogk_B          373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD  452 (592)
T ss_dssp             HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred             HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence            123456677777766666544444443446777777775    3344421     11224456778888886433  443


Q ss_pred             cCCccc-CCCCCccEEEccCccccc-ccCccCCCCCCCCEEeccCCcCccc-CCccccCCCCCCeEEccCCcccccCccc
Q 041953          189 VVPKEI-CNLTKLKGLYLGGNRLQG-EIPRESGNLAELELMSLSENELQGA-IPREWGNLTGLGILQLSDNFLTGITPSS  265 (279)
Q Consensus       189 ~~~~~l-~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~  265 (279)
                      .....+ ..+++|+.|++++|.+++ .++..+..+++|+.|++++|.+++. ++.....+++|+.|++++|+++......
T Consensus       453 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~  532 (592)
T 3ogk_B          453 LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDL  532 (592)
T ss_dssp             HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTG
T ss_pred             HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHH
Confidence            333333 236788999999888765 3344557788999999999987643 3344567889999999999988764443


Q ss_pred             c
Q 041953          266 I  266 (279)
Q Consensus       266 ~  266 (279)
                      +
T Consensus       533 l  533 (592)
T 3ogk_B          533 M  533 (592)
T ss_dssp             G
T ss_pred             H
Confidence            3

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.57  E-value=7.5e-17  Score=145.27  Aligned_cols=102  Identities=15%  Similarity=0.163  Sum_probs=57.6

Q ss_pred             EEEEEcCCCC-ccc-cCcccccCCCCCCEEEccCCcccCC----CCccccCCCCCcEEEcccCccc----ccCCccCCCC
Q 041953           55 VTVLNISRLN-LTG-TIPSQLGNLSSLQSLNLSCNRLSGS----IPSAIFTTYTLKYVSFRKNQLS----GAFPSFAFNT  124 (279)
Q Consensus        55 l~~L~l~~~~-l~~-~~~~~~~~l~~L~~L~l~~~~i~~~----~~~~~~~~~~L~~L~l~~n~~~----~~~~~~~~~l  124 (279)
                      +++|++++|. +.. .++.....+++|++|++++|.+.+.    ++..+..+++|++|++++|.+.    ..++..+..+
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            7777777765 211 1222233567777777777766543    2223445667777777777665    1223334456


Q ss_pred             CCCcEEEeeccccccccChhhhcCCCCCcEEEee
Q 041953          125 SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS  158 (279)
Q Consensus       125 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  158 (279)
                      ++|++|++++|.+. .++.. +..+++|++|+++
T Consensus       220 ~~L~~L~L~~~~~~-~l~~~-~~~~~~L~~L~l~  251 (592)
T 3ogk_B          220 RSLVSVKVGDFEIL-ELVGF-FKAAANLEEFCGG  251 (592)
T ss_dssp             TTCCEEECSSCBGG-GGHHH-HHHCTTCCEEEEC
T ss_pred             CCCcEEeccCccHH-HHHHH-HhhhhHHHhhccc
Confidence            67777777776665 34432 3555666666654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.55  E-value=1.7e-17  Score=128.79  Aligned_cols=130  Identities=23%  Similarity=0.258  Sum_probs=67.7

Q ss_pred             CCCCCEEEccCCcccCCCCc------cccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCC
Q 041953           76 LSSLQSLNLSCNRLSGSIPS------AIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNL  149 (279)
Q Consensus        76 l~~L~~L~l~~~~i~~~~~~------~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  149 (279)
                      ...++.++++.+.+.+..|.      .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|... ..+
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~-~~~   92 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD-AVA   92 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH-HHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh-hcC
Confidence            34455555555555444443      56666666666666666653 34 5555666666666666665 455433 344


Q ss_pred             CCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCC-cccCCCCCccEEEccCcccc
Q 041953          150 PFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVP-KEICNLTKLKGLYLGGNRLQ  211 (279)
Q Consensus       150 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~  211 (279)
                      ++|++|++++|.+++ ++ .+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.
T Consensus        93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A           93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            556666666665552 22 34444555555555555442211 23344444444444444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.54  E-value=5.5e-14  Score=106.20  Aligned_cols=106  Identities=24%  Similarity=0.250  Sum_probs=51.5

Q ss_pred             cEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCC
Q 041953          153 EYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSEN  232 (279)
Q Consensus       153 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  232 (279)
                      +.+++++|.++ .+|..+.  ++++.|++++|.+.+..+..+..+++|+.|++++|.+++..+..|..+++|++|+|++|
T Consensus        12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            34444444444 2333221  34455555555555444444555555555555555555443444445555555555555


Q ss_pred             cCcccCCccccCCCCCCeEEccCCccccc
Q 041953          233 ELQGAIPREWGNLTGLGILQLSDNFLTGI  261 (279)
Q Consensus       233 ~i~~~~~~~~~~~~~L~~L~l~~n~l~~~  261 (279)
                      ++++..+..|..+++|+.|++++|++...
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            55544444455555555555555555433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.54  E-value=4.2e-17  Score=126.58  Aligned_cols=111  Identities=23%  Similarity=0.265  Sum_probs=54.8

Q ss_pred             cCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCC
Q 041953          120 FAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTK  199 (279)
Q Consensus       120 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~  199 (279)
                      .+..+++|++|++++|.+. .+|  .+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+ .| .+..+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence            4445555555555555554 344  2244555555555555554 344444444555555555555543 22 3444455


Q ss_pred             ccEEEccCcccccccC-ccCCCCCCCCEEeccCCcCcc
Q 041953          200 LKGLYLGGNRLQGEIP-RESGNLAELELMSLSENELQG  236 (279)
Q Consensus       200 L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~i~~  236 (279)
                      |+.|++++|.+++..+ ..+..+++|++|++++|++.+
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            5555555555542211 234455555555555555543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.53  E-value=9.3e-14  Score=105.31  Aligned_cols=104  Identities=24%  Similarity=0.235  Sum_probs=55.9

Q ss_pred             cEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccC
Q 041953          128 QYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGG  207 (279)
Q Consensus       128 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  207 (279)
                      +.++++++.+. .+|..+   .++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++
T Consensus        15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            45556666554 555433   25555666666555544455555555555555555555544334445555555555555


Q ss_pred             cccccccCccCCCCCCCCEEeccCCcCc
Q 041953          208 NRLQGEIPRESGNLAELELMSLSENELQ  235 (279)
Q Consensus       208 n~~~~~~~~~~~~~~~L~~L~l~~n~i~  235 (279)
                      |.+++..+..+..+++|+.|+|++|++.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            5555333334555555555555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.47  E-value=2.9e-16  Score=141.47  Aligned_cols=212  Identities=15%  Similarity=0.072  Sum_probs=138.3

Q ss_pred             CCeEEEEEcCCCCccccC-cccccCCCCCCEEEccCCcccCC-CCccccCCCCCcEEEccc---------CcccccCCcc
Q 041953           52 SHRVTVLNISRLNLTGTI-PSQLGNLSSLQSLNLSCNRLSGS-IPSAIFTTYTLKYVSFRK---------NQLSGAFPSF  120 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~~~~~L~~L~l~~---------n~~~~~~~~~  120 (279)
                      +++|++|++++|.++... ...+..+++|++|++++| +.+. .+.....+++|++|++.+         +.++......
T Consensus       288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~  366 (594)
T 2p1m_B          288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS  366 (594)
T ss_dssp             HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred             hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence            357888888888865432 233557788888888887 4322 222233578888888844         2332111111


Q ss_pred             C-CCCCCCcEEEeeccccccccChhhhcCCCCCcEEEee--c----cccccc-----CCccCCCCccCcEEeccCCcccc
Q 041953          121 A-FNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS--Q----NMFHGG-----IPSALSNCAYLQRLGLSSNDFSG  188 (279)
Q Consensus       121 ~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~--~----n~l~~~-----~~~~l~~l~~L~~L~l~~n~~~~  188 (279)
                      + ..+++|++|.+..+.+.......+...+++|+.|++.  +    +.++..     ++..+..+++|+.|++++ .+.+
T Consensus       367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~  445 (594)
T 2p1m_B          367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTD  445 (594)
T ss_dssp             HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCH
T ss_pred             HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccH
Confidence            1 2478899998888887755445554568899999998  3    334311     111245677899999977 5554


Q ss_pred             cCCcccCC-CCCccEEEccCcccccccCccC-CCCCCCCEEeccCCcCcccCCc-cccCCCCCCeEEccCCcccccCccc
Q 041953          189 VVPKEICN-LTKLKGLYLGGNRLQGEIPRES-GNLAELELMSLSENELQGAIPR-EWGNLTGLGILQLSDNFLTGITPSS  265 (279)
Q Consensus       189 ~~~~~l~~-~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~  265 (279)
                      .....+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.... ....+++|+.|++++|+++......
T Consensus       446 ~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  525 (594)
T 2p1m_B          446 KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKL  525 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHH
T ss_pred             HHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHH
Confidence            44444443 7789999999999865544433 5678999999999998644333 3456889999999999885544333

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=4.9e-13  Score=100.91  Aligned_cols=105  Identities=23%  Similarity=0.229  Sum_probs=75.0

Q ss_pred             EEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeec
Q 041953           55 VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGF  134 (279)
Q Consensus        55 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  134 (279)
                      .+.++++++.++. +|..+.  ++|++|++++|.+.+..+..|..+++|++|++++|++.+..+..+..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            3467778887773 554442  6788888888888766677777788888888888877755555567777777777777


Q ss_pred             cccccccChhhhcCCCCCcEEEeeccccc
Q 041953          135 NTLSGEIPANICSNLPFLEYLALSQNMFH  163 (279)
Q Consensus       135 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~  163 (279)
                      |++. .++...|..+++|++|++++|.+.
T Consensus        88 N~l~-~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLK-SIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccC-EeCHHHhcCCCCCCEEEeCCCCCC
Confidence            7776 666665567777777777777665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.46  E-value=1.6e-15  Score=136.52  Aligned_cols=109  Identities=17%  Similarity=0.209  Sum_probs=68.6

Q ss_pred             CCeEEEEEcCCCCccccCccccc-CCCCCCEEEccCC-cccCC-CCccccCCCCCcEEEcccCcccccCC----ccCCCC
Q 041953           52 SHRVTVLNISRLNLTGTIPSQLG-NLSSLQSLNLSCN-RLSGS-IPSAIFTTYTLKYVSFRKNQLSGAFP----SFAFNT  124 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~~-~i~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~l  124 (279)
                      ++++++|+++++.+++..+..+. .+++|++|++++| .+.+. .+..+..+++|++|++++|.+.+..+    .....+
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~  183 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY  183 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence            45788888888877765555554 5778888888887 44422 33334467888888888887654332    223366


Q ss_pred             CCCcEEEeeccc--cccccChhhhcCCCCCcEEEeecc
Q 041953          125 SSLQYLDFGFNT--LSGEIPANICSNLPFLEYLALSQN  160 (279)
Q Consensus       125 ~~L~~L~l~~n~--~~~~~~~~~~~~~~~L~~L~l~~n  160 (279)
                      ++|++|++++|.  +.......+...+++|++|++++|
T Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            788888887775  221112222344677777777766

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.44  E-value=7.9e-13  Score=100.15  Aligned_cols=104  Identities=24%  Similarity=0.313  Sum_probs=74.7

Q ss_pred             EEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeecc
Q 041953           56 TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFN  135 (279)
Q Consensus        56 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  135 (279)
                      +.++++++.++ .+|..+.  ++|+.|++++|.+.+..|..|..+++|++|++++|++.+..+..+..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            46788888876 4555443  67888888888887666777777888888888888777544445667777777777777


Q ss_pred             ccccccChhhhcCCCCCcEEEeeccccc
Q 041953          136 TLSGEIPANICSNLPFLEYLALSQNMFH  163 (279)
Q Consensus       136 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~  163 (279)
                      ++. .++...|..+++|++|++++|.+.
T Consensus        92 ~l~-~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLK-SIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCC-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccc-eeCHHHhccccCCCEEEeCCCCcc
Confidence            776 666665566777777777777665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.42  E-value=1.6e-15  Score=128.73  Aligned_cols=162  Identities=21%  Similarity=0.164  Sum_probs=91.4

Q ss_pred             CCCCEEEccCCcccCCCCccccC-----CCCCcEEEcccCcccccCCccC-CCCCCCcEEEeeccccccccChhh----h
Q 041953           77 SSLQSLNLSCNRLSGSIPSAIFT-----TYTLKYVSFRKNQLSGAFPSFA-FNTSSLQYLDFGFNTLSGEIPANI----C  146 (279)
Q Consensus        77 ~~L~~L~l~~~~i~~~~~~~~~~-----~~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~----~  146 (279)
                      +.|+.|++++|.++......+..     .++|+.|++++|.+.......+ ..+++|++|++++|.+.......+    .
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            56778888888776432222222     2577788888777653222221 234567777777777653211111    1


Q ss_pred             cCCCCCcEEEeecccccc----cCCccCCCCccCcEEeccCCcccccC----CcccCCCCCccEEEccCcccccc----c
Q 041953          147 SNLPFLEYLALSQNMFHG----GIPSALSNCAYLQRLGLSSNDFSGVV----PKEICNLTKLKGLYLGGNRLQGE----I  214 (279)
Q Consensus       147 ~~~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~~~~~----~  214 (279)
                      ...++|++|++++|.+++    .++..+..+++|++|++++|.+.+..    ...+...++|+.|++++|.+++.    +
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            235667777777777653    22333455666777777777765422    33444555677777777766532    2


Q ss_pred             CccCCCCCCCCEEeccCCcCcccC
Q 041953          215 PRESGNLAELELMSLSENELQGAI  238 (279)
Q Consensus       215 ~~~~~~~~~L~~L~l~~n~i~~~~  238 (279)
                      +..+...+.|++|+|++|.|.+..
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~~g  255 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSSEG  255 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCHHH
T ss_pred             HHHHHhCCCCCEEeccCCCCCHHH
Confidence            223334466777777777665433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.34  E-value=8.7e-15  Score=124.24  Aligned_cols=142  Identities=16%  Similarity=0.128  Sum_probs=58.9

Q ss_pred             CCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccC-----CCCccCcEEeccCCccccc----CCcccC
Q 041953          125 SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSAL-----SNCAYLQRLGLSSNDFSGV----VPKEIC  195 (279)
Q Consensus       125 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~~~~~----~~~~l~  195 (279)
                      ++|++|++++|.+.......+...+++|++|++++|.+.+.....+     ...+.|++|++++|.+++.    +...+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            3455555555544322222222233445555555554432211111     1234455555555554321    112223


Q ss_pred             CCCCccEEEccCcccccc----cCccCCCCCCCCEEeccCCcCccc----CCccccCCCCCCeEEccCCcccccCcccc
Q 041953          196 NLTKLKGLYLGGNRLQGE----IPRESGNLAELELMSLSENELQGA----IPREWGNLTGLGILQLSDNFLTGITPSSI  266 (279)
Q Consensus       196 ~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  266 (279)
                      ..++|++|++++|.+.+.    ++..+...++|+.|+|++|.+++.    ++..+..+++|++|++++|+++......+
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            344455555555554321    122333344555555555554432    11223334455555555555544443333

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.33  E-value=5.5e-12  Score=106.06  Aligned_cols=103  Identities=19%  Similarity=0.142  Sum_probs=62.5

Q ss_pred             EEEeecc-ccccccChhhhcCCCCCcEEEeec-ccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEcc
Q 041953          129 YLDFGFN-TLSGEIPANICSNLPFLEYLALSQ-NMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLG  206 (279)
Q Consensus       129 ~L~l~~n-~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~  206 (279)
                      .++.+++ .+. .+|.  +..+.+|++|+|++ |.+.+..+..|..+++|+.|+|++|.+.+..|..|.++++|+.|+++
T Consensus        12 ~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            3455555 555 5665  35666666666664 66665555566666666666666666666556666666666666666


Q ss_pred             CcccccccCccCCCCCCCCEEeccCCcCc
Q 041953          207 GNRLQGEIPRESGNLAELELMSLSENELQ  235 (279)
Q Consensus       207 ~n~~~~~~~~~~~~~~~L~~L~l~~n~i~  235 (279)
                      +|.+++..+..+..++ |+.|+|.+|++.
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            6666644444444433 666666666664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.24  E-value=2.4e-11  Score=102.19  Aligned_cols=101  Identities=23%  Similarity=0.239  Sum_probs=79.0

Q ss_pred             EcCCC-CccccCcccccCCCCCCEEEccC-CcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccc
Q 041953           59 NISRL-NLTGTIPSQLGNLSSLQSLNLSC-NRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNT  136 (279)
Q Consensus        59 ~l~~~-~l~~~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  136 (279)
                      +.+++ +++ .+|. +..+.+|+.|++++ |.+.+..+..|..+++|+.|+|++|++.+..+..|..+++|++|+|++|+
T Consensus        14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            44555 566 3666 88888888888885 88886666778888888888888888887777778888888888888888


Q ss_pred             cccccChhhhcCCCCCcEEEeeccccc
Q 041953          137 LSGEIPANICSNLPFLEYLALSQNMFH  163 (279)
Q Consensus       137 ~~~~~~~~~~~~~~~L~~L~l~~n~l~  163 (279)
                      +. .+|...|..++ |+.|++.+|.+.
T Consensus        92 l~-~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           92 LE-SLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             cc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence            87 77777666555 888888888765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.18  E-value=6.1e-10  Score=95.25  Aligned_cols=100  Identities=12%  Similarity=0.046  Sum_probs=59.5

Q ss_pred             cCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCC
Q 041953          169 ALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGL  248 (279)
Q Consensus       169 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L  248 (279)
                      .+..+.+|+.+.+..+ +......+|.++.+|+.+.+..+ ++......|.++.+|+.+.+..+ ++.+...+|.+|++|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            3445556666666543 33344556666777777777543 44445566777777777777665 554556677777777


Q ss_pred             CeEEccCCcccccCccccccccccc
Q 041953          249 GILQLSDNFLTGITPSSIYKLLFSI  273 (279)
Q Consensus       249 ~~L~l~~n~l~~~~~~~~~~~~~~~  273 (279)
                      +.+++..+ +... ..+|.++.+++
T Consensus       369 ~~i~lp~~-~~~~-~~~F~~c~~L~  391 (394)
T 4fs7_A          369 KKVELPKR-LEQY-RYDFEDTTKFK  391 (394)
T ss_dssp             CEEEEEGG-GGGG-GGGBCTTCEEE
T ss_pred             CEEEECCC-CEEh-hheecCCCCCc
Confidence            77777544 2222 34566665443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.08  E-value=2.9e-09  Score=91.04  Aligned_cols=214  Identities=14%  Similarity=0.088  Sum_probs=164.3

Q ss_pred             eCCCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCC
Q 041953           48 CDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSL  127 (279)
Q Consensus        48 ~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L  127 (279)
                      +...+..|+.+.+.++. ..+....|.++.+|+.+.+..+ +.......|..+..|+.+.+..+...  +........+|
T Consensus       157 aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l  232 (394)
T 4fs7_A          157 AFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGV  232 (394)
T ss_dssp             TTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCC
T ss_pred             hhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCC
Confidence            34566789999998664 4466788999999999999876 44355678889999999888775432  23444466789


Q ss_pred             cEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccC
Q 041953          128 QYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGG  207 (279)
Q Consensus       128 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  207 (279)
                      +.+.+.... . .+....|..+..++.+.+..+... .....+..+..++.+......+.   ...+..+.+|+.+.+.+
T Consensus       233 ~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~  306 (394)
T 4fs7_A          233 KNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLD  306 (394)
T ss_dssp             CEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECT
T ss_pred             ceEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccccccccccccc
Confidence            999886543 2 566777788999999999877544 55667888888988887765433   35677888999999976


Q ss_pred             cccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccccccccc
Q 041953          208 NRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK  274 (279)
Q Consensus       208 n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  274 (279)
                      + ++......|.++.+|+.++|.++ ++.+...+|.+|.+|+.+++..+ ++.+...+|..|.++++
T Consensus       307 ~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~  370 (394)
T 4fs7_A          307 S-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKK  370 (394)
T ss_dssp             T-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred             c-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence            5 55466678899999999999755 66677789999999999999876 88899999999877654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.08  E-value=5.8e-09  Score=89.17  Aligned_cols=100  Identities=14%  Similarity=0.201  Sum_probs=45.8

Q ss_pred             CCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCC
Q 041953          170 LSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLG  249 (279)
Q Consensus       170 l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~  249 (279)
                      |..+..|+.+.+..+-.. .....|.++..|+.+.+.. .++......|.++.+|+.+.|.++ ++.+...+|.+|.+|+
T Consensus       261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             eeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence            334444444444332211 2233344444444444432 222233344555555555555543 3334444555555565


Q ss_pred             eEEccCCcccccCccccccccccc
Q 041953          250 ILQLSDNFLTGITPSSIYKLLFSI  273 (279)
Q Consensus       250 ~L~l~~n~l~~~~~~~~~~~~~~~  273 (279)
                      .+.+-. .++.+...+|.+|.++.
T Consensus       338 ~i~ip~-sv~~I~~~aF~~C~~L~  360 (394)
T 4gt6_A          338 RIAIPS-SVTKIPESAFSNCTALN  360 (394)
T ss_dssp             EEEECT-TCCBCCGGGGTTCTTCC
T ss_pred             EEEECc-ccCEEhHhHhhCCCCCC
Confidence            555532 25555555555554443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.05  E-value=9.1e-11  Score=98.90  Aligned_cols=201  Identities=16%  Similarity=0.194  Sum_probs=114.1

Q ss_pred             CCeEEEEEcCCCCccc-c-------CcccccCCCCCCEEEccCCccc---------CCCCccccCCCCCcEEEcccCccc
Q 041953           52 SHRVTVLNISRLNLTG-T-------IPSQLGNLSSLQSLNLSCNRLS---------GSIPSAIFTTYTLKYVSFRKNQLS  114 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~-~-------~~~~~~~l~~L~~L~l~~~~i~---------~~~~~~~~~~~~L~~L~l~~n~~~  114 (279)
                      ..+++.|.+......+ .       +..+...+++|+.|.+......         +.+...+..+|+|+.|.+++|.-.
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence            3467777777554331 1       1233456789999998764321         123344567789999999887311


Q ss_pred             ccCCccCCCCCCCcEEEeeccccccccChhhh-cCCCCCcEEEeecc--ccccc-----CCccC--CCCccCcEEeccCC
Q 041953          115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANIC-SNLPFLEYLALSQN--MFHGG-----IPSAL--SNCAYLQRLGLSSN  184 (279)
Q Consensus       115 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~~L~~L~l~~n--~l~~~-----~~~~l--~~l~~L~~L~l~~n  184 (279)
                       .++. + .+++|++|++..+.+.......+. ..+++|++|+++.+  ...+.     +...+  ..+++|+.|++.+|
T Consensus       186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~  262 (362)
T 2ra8_A          186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA  262 (362)
T ss_dssp             -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred             -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence             2333 3 378999999988876533332332 36889999988532  11111     11122  23567777777777


Q ss_pred             cccccCCccc---CCCCCccEEEccCcccccc----cCccCCCCCCCCEEeccCCcCcccCCccccC-CCCCCeEEccCC
Q 041953          185 DFSGVVPKEI---CNLTKLKGLYLGGNRLQGE----IPRESGNLAELELMSLSENELQGAIPREWGN-LTGLGILQLSDN  256 (279)
Q Consensus       185 ~~~~~~~~~l---~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~-~~~L~~L~l~~n  256 (279)
                      .+.+.....+   ..+++|+.|+++.|.+.+.    ++..+..+++|+.|++++|.+.+.....+.. +  ...++++++
T Consensus       263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~  340 (362)
T 2ra8_A          263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDS  340 (362)
T ss_dssp             TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSB
T ss_pred             CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCC
Confidence            6653222111   2356777777777776542    2222334567777777777665433333332 1  345666666


Q ss_pred             c
Q 041953          257 F  257 (279)
Q Consensus       257 ~  257 (279)
                      .
T Consensus       341 ~  341 (362)
T 2ra8_A          341 Q  341 (362)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.95  E-value=1.5e-10  Score=97.64  Aligned_cols=187  Identities=14%  Similarity=0.098  Sum_probs=122.1

Q ss_pred             CCCCEEEccCCcccC-C-------CCccccCCCCCcEEEcccCccc---------ccCCccCCCCCCCcEEEeecccccc
Q 041953           77 SSLQSLNLSCNRLSG-S-------IPSAIFTTYTLKYVSFRKNQLS---------GAFPSFAFNTSSLQYLDFGFNTLSG  139 (279)
Q Consensus        77 ~~L~~L~l~~~~i~~-~-------~~~~~~~~~~L~~L~l~~n~~~---------~~~~~~~~~l~~L~~L~l~~n~~~~  139 (279)
                      ..++.|.+......+ .       +..+...+++|+.|.+......         +.+...+..+|+|+.|.+.++.-. 
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence            357788887554431 1       1223456789999998764321         112234457799999999887422 


Q ss_pred             ccChhhhcCCCCCcEEEeecccccccCCccCC--CCccCcEEeccC--Cccccc-----CCccc--CCCCCccEEEccCc
Q 041953          140 EIPANICSNLPFLEYLALSQNMFHGGIPSALS--NCAYLQRLGLSS--NDFSGV-----VPKEI--CNLTKLKGLYLGGN  208 (279)
Q Consensus       140 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~--n~~~~~-----~~~~l--~~~~~L~~L~l~~n  208 (279)
                      .++. + . +++|+.|++..+.+.......+.  .+++|+.|+|+.  +...+.     +...+  ..+++|+.|++.+|
T Consensus       186 ~l~~-~-~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~  262 (362)
T 2ra8_A          186 SIGK-K-P-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA  262 (362)
T ss_dssp             BCCS-C-B-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred             eecc-c-c-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence            3443 2 3 88999999998887643333333  678999999853  221111     11122  24789999999999


Q ss_pred             ccccccCccC---CCCCCCCEEeccCCcCcccC----CccccCCCCCCeEEccCCcccccCccccc
Q 041953          209 RLQGEIPRES---GNLAELELMSLSENELQGAI----PREWGNLTGLGILQLSDNFLTGITPSSIY  267 (279)
Q Consensus       209 ~~~~~~~~~~---~~~~~L~~L~l~~n~i~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  267 (279)
                      .+.+..+..+   ..+++|+.|+|+.|.+.+..    +..+..+++|+.|++++|.++...-..+.
T Consensus       263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~  328 (362)
T 2ra8_A          263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ  328 (362)
T ss_dssp             TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred             CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence            8864332222   35789999999999997643    33345679999999999998776554444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.92  E-value=9.4e-08  Score=81.63  Aligned_cols=115  Identities=15%  Similarity=0.209  Sum_probs=90.0

Q ss_pred             cChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCC
Q 041953          141 IPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGN  220 (279)
Q Consensus       141 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~  220 (279)
                      +....|.++..|+.+.+..+... ....++..+..|+.+.+.. .+......+|.++.+|+.+.+..+ ++......|.+
T Consensus       256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~  332 (394)
T 4gt6_A          256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG  332 (394)
T ss_dssp             ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred             cccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence            34456778888999998765443 5556788899999999964 455466678889999999999765 55466778999


Q ss_pred             CCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCccc
Q 041953          221 LAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLT  259 (279)
Q Consensus       221 ~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~  259 (279)
                      +.+|+.+.|..+ ++.+...+|.+|.+|+.+++.++...
T Consensus       333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~  370 (394)
T 4gt6_A          333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ  370 (394)
T ss_dssp             CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred             CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee
Confidence            999999999765 66566788999999999999987543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.91  E-value=9.8e-08  Score=81.03  Aligned_cols=120  Identities=16%  Similarity=0.164  Sum_probs=70.0

Q ss_pred             cCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCE
Q 041953          147 SNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELEL  226 (279)
Q Consensus       147 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  226 (279)
                      .++..|+.+.+..+ ++.....++..+.+|+.+.+..+ +.......|.++.+|+.+.+.++.++......|.++.+|+.
T Consensus       237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~  314 (379)
T 4h09_A          237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS  314 (379)
T ss_dssp             TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred             cCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence            34444444444432 22222334555555555555433 33234455666777777777766666555666777777777


Q ss_pred             EeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccccc
Q 041953          227 MSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL  270 (279)
Q Consensus       227 L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  270 (279)
                      +.|..+ ++.+...+|.+|.+|+.+.+..+ ++.+...+|..+.
T Consensus       315 i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          315 VTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             EEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            777654 55455567777777777777543 6666666776663

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.58  E-value=1.8e-06  Score=73.23  Aligned_cols=148  Identities=13%  Similarity=0.096  Sum_probs=111.7

Q ss_pred             cccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCcc
Q 041953           96 AIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY  175 (279)
Q Consensus        96 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~  175 (279)
                      .+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ +. .+....|.++..|+.+.+..+ +......++..+.+
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~  287 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN  287 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccc
Confidence            3445556666666543 33344556778889999998765 44 677888899999999999764 44355567889999


Q ss_pred             CcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCC
Q 041953          176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLG  249 (279)
Q Consensus       176 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~  249 (279)
                      |+.+.+.++.+......+|.++.+|+.+.+..+ ++.+....|.++.+|+.+.+..+ ++.+...+|.+++.++
T Consensus       288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~~  359 (379)
T 4h09_A          288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSITK  359 (379)
T ss_dssp             CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCCC
T ss_pred             cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCCc
Confidence            999999988887677788999999999999765 55466678999999999999765 6656667888876443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.55  E-value=4.7e-09  Score=80.02  Aligned_cols=42  Identities=19%  Similarity=0.109  Sum_probs=18.7

Q ss_pred             cccCCCCCCEEEccCC-cccCC----CCccccCCCCCcEEEcccCcc
Q 041953           72 QLGNLSSLQSLNLSCN-RLSGS----IPSAIFTTYTLKYVSFRKNQL  113 (279)
Q Consensus        72 ~~~~l~~L~~L~l~~~-~i~~~----~~~~~~~~~~L~~L~l~~n~~  113 (279)
                      .+...+.|++|++++| .+.+.    +...+...++|++|++++|.+
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i   77 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRS   77 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCC
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCC
Confidence            3444455555555555 44421    122233334444555544444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.53  E-value=7.7e-09  Score=78.84  Aligned_cols=115  Identities=17%  Similarity=0.113  Sum_probs=67.5

Q ss_pred             cCCCCCcEEEeecc-cccc----cCCccCCCCccCcEEeccCCcccccC----CcccCCCCCccEEEccCcccccc----
Q 041953          147 SNLPFLEYLALSQN-MFHG----GIPSALSNCAYLQRLGLSSNDFSGVV----PKEICNLTKLKGLYLGGNRLQGE----  213 (279)
Q Consensus       147 ~~~~~L~~L~l~~n-~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~~~~~----  213 (279)
                      ...+.|++|++++| .+..    .+...+...++|++|++++|.+.+..    ...+...+.|++|++++|.+.+.    
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            44455555555555 4432    12233444556666666666654321    22233345677777777776532    


Q ss_pred             cCccCCCCCCCCEEec--cCCcCccc----CCccccCCCCCCeEEccCCccccc
Q 041953          214 IPRESGNLAELELMSL--SENELQGA----IPREWGNLTGLGILQLSDNFLTGI  261 (279)
Q Consensus       214 ~~~~~~~~~~L~~L~l--~~n~i~~~----~~~~~~~~~~L~~L~l~~n~l~~~  261 (279)
                      +...+...+.|++|+|  ++|.+...    +...+...+.|+.|++++|.+...
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence            3445566677888888  77877643    234456668888888888877543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.37  E-value=9.1e-08  Score=71.56  Aligned_cols=34  Identities=6%  Similarity=0.096  Sum_probs=16.1

Q ss_pred             CCcEEEeecccccccCCccCCCCccCcEEeccCC
Q 041953          151 FLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSN  184 (279)
Q Consensus       151 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  184 (279)
                      +|++|+++++.+++.....+..+++|++|++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            3555555555444333333444445555555444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.36  E-value=1.1e-07  Score=76.20  Aligned_cols=64  Identities=23%  Similarity=0.216  Sum_probs=28.8

Q ss_pred             CCCCcEEEcccCcccc--cCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccc
Q 041953          100 TYTLKYVSFRKNQLSG--AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHG  164 (279)
Q Consensus       100 ~~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  164 (279)
                      +++|+.|+|++|++.+  .++..+..+++|+.|+|++|.+.+.-.-..+..+ +|++|++.+|.+.+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD  234 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence            4555555555555543  2223334455555555555555421010111222 55555555555543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.22  E-value=3.1e-07  Score=68.63  Aligned_cols=83  Identities=6%  Similarity=0.023  Sum_probs=44.4

Q ss_pred             eEEEEEcCCCCccccCcccccCCCCCCEEEccCCc-ccCCCCccccCC----CCCcEEEcccCc-ccccCCccCCCCCCC
Q 041953           54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNR-LSGSIPSAIFTT----YTLKYVSFRKNQ-LSGAFPSFAFNTSSL  127 (279)
Q Consensus        54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~~~~----~~L~~L~l~~n~-~~~~~~~~~~~l~~L  127 (279)
                      +|+.|+++++.++..--..+..+++|++|++++|. +++..-..+..+    ++|++|++++|. ++..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            56777777766654444455666666667766663 543333333332    346666666653 442222233445555


Q ss_pred             cEEEeeccc
Q 041953          128 QYLDFGFNT  136 (279)
Q Consensus       128 ~~L~l~~n~  136 (279)
                      ++|+++++.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            555555553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.18  E-value=1e-06  Score=70.62  Aligned_cols=40  Identities=33%  Similarity=0.421  Sum_probs=17.7

Q ss_pred             CCCCCcEEEeecccccc--cCCccCCCCccCcEEeccCCccc
Q 041953          148 NLPFLEYLALSQNMFHG--GIPSALSNCAYLQRLGLSSNDFS  187 (279)
Q Consensus       148 ~~~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~  187 (279)
                      ++++|+.|++++|.+++  .++..+..+++|+.|+|++|.+.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~  209 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  209 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence            34555555555555543  11222333444444444444444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.40  E-value=0.00038  Score=49.34  Aligned_cols=36  Identities=28%  Similarity=0.271  Sum_probs=20.1

Q ss_pred             CccEEEccCcccccccCccCCCCCCCCEEeccCCcC
Q 041953          199 KLKGLYLGGNRLQGEIPRESGNLAELELMSLSENEL  234 (279)
Q Consensus       199 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i  234 (279)
                      +++.|++++|.++...+..|..+++|+.|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            455666666665544444455555566666665544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.23  E-value=3.5e-05  Score=58.60  Aligned_cols=13  Identities=38%  Similarity=0.393  Sum_probs=5.8

Q ss_pred             CCCcEEEeecccc
Q 041953          125 SSLQYLDFGFNTL  137 (279)
Q Consensus       125 ~~L~~L~l~~n~~  137 (279)
                      ..|++|+|++|.+
T Consensus        98 ~tL~~L~L~~N~I  110 (197)
T 1pgv_A           98 PSLRVLNVESNFL  110 (197)
T ss_dssp             SSCCEEECCSSBC
T ss_pred             CccCeEecCCCcC
Confidence            3444444444444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.16  E-value=8.9e-05  Score=56.38  Aligned_cols=112  Identities=13%  Similarity=0.069  Sum_probs=60.7

Q ss_pred             cCCCCCcEEEeecc-cccc----cCCccCCCCccCcEEeccCCcccccCC----cccCCCCCccEEEccCcccccc----
Q 041953          147 SNLPFLEYLALSQN-MFHG----GIPSALSNCAYLQRLGLSSNDFSGVVP----KEICNLTKLKGLYLGGNRLQGE----  213 (279)
Q Consensus       147 ~~~~~L~~L~l~~n-~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~----~~l~~~~~L~~L~l~~n~~~~~----  213 (279)
                      .+-+.|++|+++++ .+.+    .+.+++...+.|+.|+|++|.+.+..-    ..+..-+.|+.|+++.|.|...    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34455555555553 4332    122344455566666666666653221    2223335677777777766532    


Q ss_pred             cCccCCCCCCCCEEeccCC---cCcc----cCCccccCCCCCCeEEccCCcc
Q 041953          214 IPRESGNLAELELMSLSEN---ELQG----AIPREWGNLTGLGILQLSDNFL  258 (279)
Q Consensus       214 ~~~~~~~~~~L~~L~l~~n---~i~~----~~~~~~~~~~~L~~L~l~~n~l  258 (279)
                      +...+..-+.|+.|+|++|   .+..    .+.+.+..-+.|+.|+++.|.+
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            2234455566888888754   3322    2234456667888888876654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.53  E-value=0.0067  Score=42.80  Aligned_cols=55  Identities=20%  Similarity=0.291  Sum_probs=29.7

Q ss_pred             EEEcCCCCcc-ccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcc
Q 041953           57 VLNISRLNLT-GTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQL  113 (279)
Q Consensus        57 ~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~  113 (279)
                      .++-++++++ ..+|..+.  .+|++|+|++|.|+...+..|..+++|+.|+|.+|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4555666554 13443332  3566667766666644444555555666666555543

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=88.13  E-value=2.3  Score=27.97  Aligned_cols=49  Identities=8%  Similarity=0.051  Sum_probs=35.6

Q ss_pred             CCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCc
Q 041953           63 LNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQ  112 (279)
Q Consensus        63 ~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~  112 (279)
                      -.++.+-..+|.++..|+.+.|..+ ++.....+|.+|.+|+.+.+....
T Consensus         6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~   54 (100)
T 2lz0_A            6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED   54 (100)
T ss_dssp             CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred             CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence            3455566678888888888888775 333566778888888888887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	279
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-25
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-15
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	9e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	8e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score =  100 bits (248), Expect = 2e-25
 Identities = 79/286 (27%), Positives = 109/286 (38%), Gaps = 34/286 (11%)

Query: 10  TDRDALLALKAHITHDPTNFFAKNWNTSTPVCN--WTGVTCD--VHSHRVTVLNISRLNL 65
            D+ ALL +K  +  +PT     +W  +T  CN  W GV CD    ++RV  L++S LNL
Sbjct: 6   QDKQALLQIKKDLG-NPTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62

Query: 66  TG--TIPSQLGNLSSLQSLNLS-CNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAF 122
                IPS L NL  L  L +   N L G IP AI     L Y+      +SGA P F  
Sbjct: 63  PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122

Query: 123 NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYL------ 176
              +L  LDF +N LSG +P +I  +LP L  +    N   G IP +  + + L      
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181

Query: 177 -----------------QRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESG 219
                                  S +        +    K                 + G
Sbjct: 182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241

Query: 220 NLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSS 265
               L  + L  N + G +P+    L  L  L +S N L G  P  
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.1 bits (131), Expect = 2e-09
 Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 1/98 (1%)

Query: 21  HITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQ 80
             +    +                 +     S  +  L++    + GT+P  L  L  L 
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 81  SLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFP 118
           SLN+S N L G IP            ++  N+     P
Sbjct: 272 SLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.5 bits (192), Expect = 1e-17
 Identities = 39/257 (15%), Positives = 76/257 (29%), Gaps = 37/257 (14%)

Query: 41  CNWTGVTCDVHSHR---------VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSG 91
           C+   V C                 +L++    +T        NL +L +L L  N++S 
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 92  SIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPF 151
             P A      L+ +   KNQL             L+  +     +   +      N   
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFN--GLNQMI 127

Query: 152 LEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ 211
           +  L  +     G    A      L  + ++  + + +          L  L+L GN++ 
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG---LPPSLTELHLDGNKIT 184

Query: 212 GEIPRESGNLAELELMSLSENELQG-----------------------AIPREWGNLTGL 248
                    L  L  + LS N +                          +P    +   +
Sbjct: 185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 244

Query: 249 GILQLSDNFLTGITPSS 265
            ++ L +N ++ I  + 
Sbjct: 245 QVVYLHNNNISAIGSND 261

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.8 bits (133), Expect = 9e-10
 Identities = 28/175 (16%), Positives = 65/175 (37%), Gaps = 11/175 (6%)

Query: 43  WTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT 102
              V   ++   V  L  + L  +G        +  L  + ++   ++ +IP  +  +  
Sbjct: 116 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPS-- 172

Query: 103 LKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMF 162
           L  +    N+++    +     ++L  L   FN++S     ++ +     E    +  + 
Sbjct: 173 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 232

Query: 163 HGGIPSALSNCAYLQRLGLSSNDFSGV------VPKEICNLTKLKGLYLGGNRLQ 211
              +P  L++  Y+Q + L +N+ S +       P          G+ L  N +Q
Sbjct: 233 K--VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.0 bits (131), Expect = 2e-09
 Identities = 40/232 (17%), Positives = 65/232 (28%), Gaps = 56/232 (24%)

Query: 56  TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLK----------- 104
             L +    ++   P     L  L+ L LS N+L         T   L+           
Sbjct: 58  HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRK 117

Query: 105 ------------YVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFL 152
                        +     + SG           L Y+      ++  IP  +  +L   
Sbjct: 118 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSL--- 173

Query: 153 EYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVV---------------------- 190
             L L  N       ++L     L +LGLS N  S V                       
Sbjct: 174 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 233

Query: 191 -PKEICNLTKLKGLYLGGNRLQG------EIPRESGNLAELELMSLSENELQ 235
            P  + +   ++ +YL  N +          P  +   A    +SL  N +Q
Sbjct: 234 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.0 bits (118), Expect = 1e-07
 Identities = 28/153 (18%), Positives = 50/153 (32%), Gaps = 26/153 (16%)

Query: 140 EIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTK 199
           ++P ++  +      L L  N           N   L  L L +N  S + P     L K
Sbjct: 24  KVPKDLPPDT---ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 80

Query: 200 LKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ-----------------------G 236
           L+ LYL  N+L+    +    L EL +      +++                       G
Sbjct: 81  LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140

Query: 237 AIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
                +  +  L  ++++D  +T I       L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIPQGLPPSL 173

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (190), Expect = 2e-17
 Identities = 52/246 (21%), Positives = 89/246 (36%), Gaps = 11/246 (4%)

Query: 21  HITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISR------LNLTGTIPSQLG 74
            I+H P   F    N +    +   +     +    +  + +        L    P+   
Sbjct: 43  RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102

Query: 75  NLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGF 134
            L  L +L+L    L    P        L+Y+  + N L         +  +L +L    
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162

Query: 135 NTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEI 194
           N +S  +P      L  L+ L L QN      P A  +   L  L L +N+ S +  + +
Sbjct: 163 NRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 221

Query: 195 CNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLS 254
             L  L+ L L  N    +  R     A L+    S +E+  ++P+    L G  + +L+
Sbjct: 222 APLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQ---RLAGRDLKRLA 277

Query: 255 DNFLTG 260
            N L G
Sbjct: 278 ANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (172), Expect = 5e-15
 Identities = 45/214 (21%), Positives = 76/214 (35%), Gaps = 3/214 (1%)

Query: 48  CDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVS 107
           C  ++      +  +  L   +P  +   ++ Q + L  NR+S    ++      L  + 
Sbjct: 6   CVCYNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILW 62

Query: 108 FRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIP 167
              N L+    +     + L+ LD   N     +       L  L  L L +       P
Sbjct: 63  LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP 122

Query: 168 SALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELM 227
                 A LQ L L  N    +      +L  L  L+L GNR+     R    L  L+ +
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 228 SLSENELQGAIPREWGNLTGLGILQLSDNFLTGI 261
            L +N +    P  + +L  L  L L  N L+ +
Sbjct: 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 2e-10
 Identities = 36/194 (18%), Positives = 59/194 (30%), Gaps = 3/194 (1%)

Query: 77  SSLQSLNLSCNRLS-GSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFN 135
            +   +  SC +    ++P  I      + +    N++S    +      +L  L    N
Sbjct: 9   YNEPKVTTSCPQQGLQAVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSN 66

Query: 136 TLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEIC 195
            L+    A         +             P+       L  L L       + P    
Sbjct: 67  VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR 126

Query: 196 NLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSD 255
            L  L+ LYL  N LQ        +L  L  + L  N +     R +  L  L  L L  
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 256 NFLTGITPSSIYKL 269
           N +  + P +   L
Sbjct: 187 NRVAHVHPHAFRDL 200

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.9 bits (193), Expect = 2e-17
 Identities = 46/224 (20%), Positives = 79/224 (35%), Gaps = 17/224 (7%)

Query: 33  NWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGS 92
                      + ++       +  L  +   ++   P     L++L  L+L+ N+L   
Sbjct: 177 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD- 233

Query: 93  IPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFL 152
               + +   L  +    NQ+S   P      + L  L  G N +S   P    + L  L
Sbjct: 234 -IGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISPLAGLTALTNL 290

Query: 153 EYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQG 212
           E                  N   L  L L  N+ S + P  + +LTKL+ L+   N++  
Sbjct: 291 ELNENQLEDISPIS-----NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD 343

Query: 213 EIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDN 256
                  NL  +  +S   N++    P    NLT +  L L+D 
Sbjct: 344 --VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 3e-06
 Identities = 42/233 (18%), Positives = 80/233 (34%), Gaps = 16/233 (6%)

Query: 54  RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQL 113
           +VT L   RL +       +  L++L  +N S N+L+   P    T      ++  +   
Sbjct: 45  QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 102

Query: 114 SGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNC 173
                +    T    + +   +    +   N+         ++    +        LS  
Sbjct: 103 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG 162

Query: 174 AYLQRLGLSSNDFSGVVPKEICN----------LTKLKGLYLGGNRLQGEIPRESGNLAE 223
             +  L   +N  +        N          LT L+ L    N++    P        
Sbjct: 163 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--N 220

Query: 224 LELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKFG 276
           L+ +SL+ N+L+        +LT L  L L++N ++ + P S    L  +K G
Sbjct: 221 LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG 271

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 1e-08
 Identities = 32/177 (18%), Positives = 48/177 (27%), Gaps = 21/177 (11%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFT--------------- 99
            T+L++S   L     + L   + L  LNL    L+                        
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL 92

Query: 100 -----TYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEY 154
                T     V         + P  A          +        +P  + +  P LE 
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152

Query: 155 LALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ 211
           L+L+ N         L+    L  L L  N     +PK       L   +L GN   
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 1e-08
 Identities = 50/219 (22%), Positives = 74/219 (33%), Gaps = 16/219 (7%)

Query: 39  PVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIF 98
           P+C          +  + V N  + NLT  +P  L        L+LS N L     + + 
Sbjct: 2   PIC-----EVSKVASHLEV-NCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLM 52

Query: 99  TTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD-FGFNTLSGEIPANICSNLPFLEYLAL 157
               L  ++     L  A  +      +L  L     +    +    +   LP L  L +
Sbjct: 53  PYTRLTQLN-----LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107

Query: 158 SQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRE 217
           S N        AL     LQ L L  N+   + P  +    KL+ L L  N L       
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167

Query: 218 SGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDN 256
              L  L+ + L EN L   IP+ +     L    L  N
Sbjct: 168 LNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 4e-08
 Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 4/101 (3%)

Query: 80  QSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSF-AFNTSSLQYLDFGFNTLS 138
           Q+L+L+   L   +   + +      ++FR  +     P    F+   +Q++D   + + 
Sbjct: 3   QTLDLTGKNLHPDVTGRLLS---QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 59

Query: 139 GEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRL 179
                 I S    L+ L+L        I + L+  + L RL
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 100

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 9e-07
 Identities = 43/258 (16%), Positives = 78/258 (30%), Gaps = 38/258 (14%)

Query: 44  TGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT- 102
             VT  + S  V      R  +   +         +Q ++LS + +  S    I +  + 
Sbjct: 14  PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHGILSQCSK 72

Query: 103 LKYVSFRKNQLSGAFPSFAFNTSSLQYLDF----GFNTLSGEIPANICSNLPFLEYLALS 158
           L+ +S    +LS    +     S+L  L+     GF+  + +   + CS L  L      
Sbjct: 73  LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 132

Query: 159 QNMFHGGIPSALSNCAYLQRLGLS----------------------------SNDFSGVV 190
                    +       + +L LS                            S       
Sbjct: 133 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC 192

Query: 191 PKEICNLTKLKGLYLGG-NRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLG 249
            +E   L  L+ L L     +  E   E G +  L+ + +      G +      L    
Sbjct: 193 FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH-- 250

Query: 250 ILQLSDNFLTGITPSSIY 267
            LQ++ +  T I   +I 
Sbjct: 251 -LQINCSHFTTIARPTIG 267

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 1e-07
 Identities = 21/94 (22%), Positives = 30/94 (31%), Gaps = 9/94 (9%)

Query: 124 TSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHG----GIPSALSNCAYLQRL 179
           +  +Q LD     LS    A +   L   + + L            I SAL     L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 180 GLSSNDFSGVVPKEIC-----NLTKLKGLYLGGN 208
            L SN+   V    +         K++ L L   
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 2e-06
 Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 9/87 (10%)

Query: 146 CSNLPFLEYLALSQNMFHG----GIPSALSNCAYLQRLGLSSNDFSGVVPKEIC-----N 196
                 L  L L+           + + L     L+ L LS+N        ++       
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 197 LTKLKGLYLGGNRLQGEIPRESGNLAE 223
              L+ L L       E+      L +
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 1e-05
 Identities = 18/117 (15%), Positives = 32/117 (27%), Gaps = 25/117 (21%)

Query: 52  SHRVTVLNISRLNLTGTIPSQL-GNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRK 110
           S  +  L+I    L+    ++L   L   Q + L    L+ +    I             
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDI------------- 47

Query: 111 NQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNL----PFLEYLALSQNMFH 163
                   S      +L  L+   N L       +   L      ++ L+L      
Sbjct: 48  -------SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 3e-05
 Identities = 16/129 (12%), Positives = 32/129 (24%), Gaps = 23/129 (17%)

Query: 21  HITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGT----IPSQLGNL 76
                       N                     + VL ++  +++ +    + + L   
Sbjct: 337 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 396

Query: 77  SSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNT 136
            SL+ L+LS N L  +    +                     S       L+ L      
Sbjct: 397 HSLRELDLSNNCLGDAGILQLVE-------------------SVRQPGCLLEQLVLYDIY 437

Query: 137 LSGEIPANI 145
            S E+   +
Sbjct: 438 WSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 6e-05
 Identities = 13/96 (13%), Positives = 22/96 (22%), Gaps = 5/96 (5%)

Query: 152 LEYLALSQNMF-HGGIPSALSNCAYLQRLGLSSNDFSGVVPKEIC----NLTKLKGLYLG 206
           ++ L +             L      Q + L     +    K+I         L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 207 GNRLQGEIPRESGNLAELELMSLSENELQGAIPREW 242
            N L            +     + +  LQ       
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 99

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 26/184 (14%), Positives = 50/184 (27%), Gaps = 43/184 (23%)

Query: 21  HITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTI---PSQLGNLS 77
                 + +      T+    +++ V           ++ +RL   G            S
Sbjct: 310 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS 369

Query: 78  SLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTL 137
            L+ L L+   +S S  S++         +   N              SL+ LD   N L
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAA-------TLLANH-------------SLRELDLSNNCL 409

Query: 138 SGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNL 197
                  +  ++                          L++L L    +S  +   +  L
Sbjct: 410 GDAGILQLVESVR--------------------QPGCLLEQLVLYDIYWSEEMEDRLQAL 449

Query: 198 TKLK 201
            K K
Sbjct: 450 EKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 0.004
 Identities = 15/108 (13%), Positives = 24/108 (22%), Gaps = 23/108 (21%)

Query: 167 PSALSNCAYLQRLGLSSNDFSGVVPKEIC----NLTKLKGLYLGGNRLQGEIPRESGNLA 222
                  + L+ L L+  D S      +         L+ L L  N L      +     
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 223 ELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL 270
                                    L  L L D + +      +  L 
Sbjct: 422 RQ-------------------PGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.5 bits (107), Expect = 6e-07
 Identities = 26/108 (24%), Positives = 38/108 (35%), Gaps = 5/108 (4%)

Query: 57  VLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGA 116
           VL+++  +LT  +   L  L  +  L+LS NRL    P+ +     L+ +    N     
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNA--LE 56

Query: 117 FPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHG 164
                 N   LQ L    N L          + P L  L L  N    
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 8/122 (6%)

Query: 104 KYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFH 163
           + +      L+            + +LD   N L    PA   + L  LE L    +   
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVL--QASDNA 54

Query: 164 GGIPSALSNCAYLQRLGLSSNDFSGV-VPKEICNLTKLKGLYLGGNRLQGEIPRESGNLA 222
                 ++N   LQ L L +N        + + +  +L  L L GN L  +       LA
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLA 113

Query: 223 EL 224
           E+
Sbjct: 114 EM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 25/109 (22%), Positives = 37/109 (33%), Gaps = 6/109 (5%)

Query: 154 YLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGE 213
            L L+       +   L     +  L LS N    + P  +  L  L+ L    +    E
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQ--ASDNALE 56

Query: 214 IPRESGNLAELELMSLSENELQG-AIPREWGNLTGLGILQLSDNFLTGI 261
                 NL  L+ + L  N LQ  A  +   +   L +L L  N L   
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.2 bits (105), Expect = 4e-06
 Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 10/94 (10%)

Query: 108 FRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIP 167
           +  N  S    S      SL+ L+   N L  E+PA        LE L  S N     +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR----LERLIASFNHL-AEVP 320

Query: 168 SALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLK 201
               N   L++L +  N      P    ++  L+
Sbjct: 321 ELPQN---LKQLHVEYNPLRE-FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 22/91 (24%), Positives = 30/91 (32%), Gaps = 10/91 (10%)

Query: 181 LSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPR 240
              N  S  +         L+ L +  N+L  E+P     L  L     S N L   +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA-EVPE 321

Query: 241 EWGNLTGLGILQLSDNFLTGI--TPSSIYKL 269
              NL     L +  N L      P S+  L
Sbjct: 322 LPQNLK---QLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 9/108 (8%)

Query: 21  HITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQ 80
                                +    +       +  LN+S   L   +P+    L   +
Sbjct: 252 SENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---E 307

Query: 81  SLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQ 128
            L  S N L+  +P        LK +    N L   FP    +   L+
Sbjct: 308 RLIASFNHLA-EVPELPQ---NLKQLHVEYNPLRE-FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 8/61 (13%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS 114
              L ++ L L+ ++P    +L   +SL  SCN L+  +P       +LK +    N L 
Sbjct: 40  AHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQ---SLKSLLVDNNNLK 91

Query: 115 G 115
            
Sbjct: 92  A 92

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 7e-04
 Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 10/132 (7%)

Query: 21  HITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQ 80
            +               +                +          +  I S      SL+
Sbjct: 228 ALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLE 287

Query: 81  SLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGE 140
            LN+S N+L   +P+       L+ +    N L+           +L+ L   +N L  E
Sbjct: 288 ELNVSNNKLI-ELPALPP---RLERLIASFNHLAEVPELP----QNLKQLHVEYNPLR-E 338

Query: 141 IPANICSNLPFL 152
            P +I  ++  L
Sbjct: 339 FP-DIPESVEDL 349

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 9e-05
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 140 EIPANICSNLPFLEYLALSQN--MFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNL 197
                I  N+P L  L LS N       + S +     L+ L LS N+       +    
Sbjct: 55  ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG 114

Query: 198 TKLKGLYLGGNRLQGEIPRESGNLAEL 224
            KL+ L+L GN L      +S  ++ +
Sbjct: 115 LKLEELWLDGNSLSDTFRDQSTYISAI 141

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 1e-04
 Identities = 30/232 (12%), Positives = 59/232 (25%), Gaps = 18/232 (7%)

Query: 41  CNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTT 100
           C+     C                +T  IPS L    +   L     +L      A    
Sbjct: 8   CSNRVFLC------------QESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGF 52

Query: 101 YTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQN 160
             L+ +   +N +     +  F+     +        +                  L  N
Sbjct: 53  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 112

Query: 161 MFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKG---LYLGGNRLQGEIPRE 217
                +P      +  + L    ++ +    +    +        L+L  N +Q      
Sbjct: 113 TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCA 172

Query: 218 SGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269
                  EL     N L+      +   +G  IL +S   +  +    +  L
Sbjct: 173 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL 224

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 7e-04
 Identities = 8/46 (17%), Positives = 15/46 (32%)

Query: 139 GEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSN 184
            E+P ++         L +S+   H      L N   L+     + 
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 34/214 (15%), Positives = 66/214 (30%), Gaps = 19/214 (8%)

Query: 30  FAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRL 89
            A     +    N T          +T L+     +T      +  L++L  L L  N++
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQI 75

Query: 90  SGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNL 149
           +   P    T  T   +S    +   A        +         +       +N+    
Sbjct: 76  TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135

Query: 150 PFLEYLAL-------------SQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICN 196
             L  +               S         + L+N + L  L    N  S + P  + +
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LAS 193

Query: 197 LTKLKGLYLGGNRLQGEIPRESGNLAELELMSLS 230
           L  L  ++L  N++    P    N + L +++L+
Sbjct: 194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 7e-04
 Identities = 31/214 (14%), Positives = 64/214 (29%), Gaps = 21/214 (9%)

Query: 55  VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS 114
              +   + N+T T+     +L  + +L+     ++      +     L  +  + NQ++
Sbjct: 21  AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT 76

Query: 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQ-------------NM 161
              P       +   L          I          L    ++               +
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136

Query: 162 FHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNL 221
               I +            LS  +        + NL+KL  L    N++    P    +L
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPL--ASL 194

Query: 222 AELELMSLSENELQGAIPREWGNLTGLGILQLSD 255
             L  + L  N++    P    N + L I+ L++
Sbjct: 195 PNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 24  HDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLN 83
             P          S      + +T   +  ++T L      ++   P  L +L +L  ++
Sbjct: 144 ISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVH 201

Query: 84  LSCNRLSGSIP 94
           L  N++S   P
Sbjct: 202 LKNNQISDVSP 212

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (87), Expect = 4e-04
 Identities = 33/148 (22%), Positives = 51/148 (34%), Gaps = 1/148 (0%)

Query: 125 SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSN 184
                L    N L       +   LP L  L L +N   G  P+A    +++Q L L  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 185 DFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGN 244
               +  K    L +LK L L  N++   +P    +L  L  ++L+ N         W  
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-F 147

Query: 245 LTGLGILQLSDNFLTGITPSSIYKLLFS 272
              L    L+        PS +  +   
Sbjct: 148 AEWLRKKSLNGGAARCGAPSKVRDVQIK 175

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 8e-04
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 3/103 (2%)

Query: 168 SALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELM 227
           +  +N    + L L       V+      L +   +    N ++ ++      L  L+ +
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGFP-LLRRLKTL 68

Query: 228 SLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL 270
            ++ N +          L  L  L L++N L  +        L
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASL 111

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 23/143 (16%), Positives = 43/143 (30%), Gaps = 11/143 (7%)

Query: 54  RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQL 113
           R   L++    +   I +    L    +++ S N +       +     LK +    N++
Sbjct: 19  RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLLR--RLKTLLVNNNRI 75

Query: 114 SGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS---QNMFHGGIPSAL 170
                        L  L    N+L      +  ++L  L YL +               +
Sbjct: 76  CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVI 135

Query: 171 SNCAYLQRLGLSSNDFSGVVPKE 193
                ++ L     DF  V  KE
Sbjct: 136 YKVPQVRVL-----DFQKVKLKE 153

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 15/178 (8%)

Query: 53  HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQ 112
           + +  +  +  ++       +  L ++  L L+ N+L+   P A        ++   K +
Sbjct: 46  NSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK 103

Query: 113 LSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSN 172
                      +S          +L     ++I   +   +  +L          + LS 
Sbjct: 104 ---------DLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSR 154

Query: 173 CAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLS 230
              L  L L  N  S +VP  +  LTKL+ LYL  N +     R    L  L+++ L 
Sbjct: 155 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELF 208

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 29/172 (16%), Positives = 46/172 (26%), Gaps = 32/172 (18%)

Query: 53  HRVTVLNISRLNLTGTIP------SQLGNLSSLQSLNLSCNRLSGSIPS----------- 95
             V      ++ L G IP      + L  L + + L LS N +   I S           
Sbjct: 18  KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISSLSGMENLRILS 76

Query: 96  ---------AIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANIC 146
                                   +    A  S      +L+ L    N ++     +  
Sbjct: 77  LGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKL 136

Query: 147 SNLPFLEYLALSQNMFHGGIPSALSNCAYLQRL-----GLSSNDFSGVVPKE 193
           + L  LE L L+ N  +       +   Y   +      L   D   V   E
Sbjct: 137 AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDE 188

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	279
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.86
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.81
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.81
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.8
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.8
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.79
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.77
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.65
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.59
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.56
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.55
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.4
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.35
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.34
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.34
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.32
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.24
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.91
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.31
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.3
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.84
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.73
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.2
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.06

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=3.2e-36  Score=249.38  Aligned_cols=261  Identities=33%  Similarity=0.491  Sum_probs=219.1

Q ss_pred             CCChhHHHHHHHHHHhccCCCcccccCCCCCCCCCcc--eeeeeeCCCC--CeEEEEEcCCCCccc--cCcccccCCCCC
Q 041953            6 STITTDRDALLALKAHITHDPTNFFAKNWNTSTPVCN--WTGVTCDVHS--HRVTVLNISRLNLTG--TIPSQLGNLSSL   79 (279)
Q Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c~--~~~~~~~~~~--~~l~~L~l~~~~l~~--~~~~~~~~l~~L   79 (279)
                      -+.++|++||++||+.+. +|. .+ .+|..+.++|.  |.|+.|+...  .+|+.|+|+++++.+  .+|..+.++++|
T Consensus         2 ~c~~~e~~aLl~~k~~~~-~~~-~l-~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L   78 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLG-NPT-TL-SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL   78 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT-CCG-GG-TTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred             CCCHHHHHHHHHHHHHCC-CCC-cC-CCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccc
Confidence            478999999999999997 554 45 88988889994  9999998643  489999999999986  478999999999


Q ss_pred             CEEEccC-CcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEee
Q 041953           80 QSLNLSC-NRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS  158 (279)
Q Consensus        80 ~~L~l~~-~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  158 (279)
                      ++|++++ |.+.+.+|..+..+++|++|++++|++.+..+..+..+.+|+.+++++|.+.+.+|..+ .+++.+++++++
T Consensus        79 ~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l-~~l~~L~~l~l~  157 (313)
T d1ogqa_          79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFD  157 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECC
T ss_pred             cccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhh-ccCcccceeecc
Confidence            9999987 88988999999999999999999999998888888889999999999998886777666 789999999999


Q ss_pred             cccccccCCccCCCCccC-cEEeccCCcccc-----------------------cCCcccCCCCCccEEEccCccccccc
Q 041953          159 QNMFHGGIPSALSNCAYL-QRLGLSSNDFSG-----------------------VVPKEICNLTKLKGLYLGGNRLQGEI  214 (279)
Q Consensus       159 ~n~l~~~~~~~l~~l~~L-~~L~l~~n~~~~-----------------------~~~~~l~~~~~L~~L~l~~n~~~~~~  214 (279)
                      +|.+.+.+|..+..+..+ +.+++++|.+.+                       ..|..+..+++++.++++++.+.+.+
T Consensus       158 ~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~  237 (313)
T d1ogqa_         158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL  237 (313)
T ss_dssp             SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            998887788777766554 666666665543                       34445566678889999999887554


Q ss_pred             CccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccccccc
Q 041953          215 PRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFS  272 (279)
Q Consensus       215 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  272 (279)
                      + .+..+++|+.|++++|++++.+|..+.++++|++|++++|.++|.+|+ ++.+.++
T Consensus       238 ~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L  293 (313)
T d1ogqa_         238 G-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRF  293 (313)
T ss_dssp             G-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGS
T ss_pred             c-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCC
Confidence            4 678889999999999999999999999999999999999999998874 4444443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4e-25  Score=179.73  Aligned_cols=208  Identities=21%  Similarity=0.199  Sum_probs=184.6

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcc-cCcccccCCccCCCCCCCcEEE
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFR-KNQLSGAFPSFAFNTSSLQYLD  131 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~-~n~~~~~~~~~~~~l~~L~~L~  131 (279)
                      +.+++|+|++|.++.+.+..|.++++|++|++++|.+....+..+..++.++.+... .+.+....+..+..+++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            357899999999997777889999999999999999987777788888999998775 4456656677889999999999


Q ss_pred             eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc
Q 041953          132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ  211 (279)
Q Consensus       132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~  211 (279)
                      +++|.+. .++...+....+|+.+++.+|.++...+..+..+++|+.|++++|.+....+..+.++++|+.+++.+|.++
T Consensus       112 l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         112 LDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccc
Confidence            9999986 666666688999999999999998666678888999999999999999888888999999999999999999


Q ss_pred             cccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCccccc
Q 041953          212 GEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGI  261 (279)
Q Consensus       212 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~  261 (279)
                      +..|..|..+++|++|++++|.+.+..+..+..+++|+.|++++|++...
T Consensus       191 ~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            88899999999999999999999988888999999999999999998754

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=1.4e-25  Score=184.90  Aligned_cols=209  Identities=27%  Similarity=0.400  Sum_probs=179.1

Q ss_pred             CCCCeEEEEEcCC-CCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCc
Q 041953           50 VHSHRVTVLNISR-LNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQ  128 (279)
Q Consensus        50 ~~~~~l~~L~l~~-~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~  128 (279)
                      .+++.|++|++++ |++.+.+|..|+++++|++|++++|++.+..+..+..+.+|+++++++|.+...+|..+..++.++
T Consensus        73 ~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~  152 (313)
T d1ogqa_          73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV  152 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred             hcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccc
Confidence            3567899999997 789889999999999999999999999988888899999999999999999888899999999999


Q ss_pred             EEEeeccccccccChhhhcCCCC-CcEEEeecccccc-----------------------cCCccCCCCccCcEEeccCC
Q 041953          129 YLDFGFNTLSGEIPANICSNLPF-LEYLALSQNMFHG-----------------------GIPSALSNCAYLQRLGLSSN  184 (279)
Q Consensus       129 ~L~l~~n~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~-----------------------~~~~~l~~l~~L~~L~l~~n  184 (279)
                      ++++++|.+.+.+|... ..+.. ++.+++++|.+++                       ..|..+..+++++.++++++
T Consensus       153 ~l~l~~n~l~~~ip~~~-~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~  231 (313)
T d1ogqa_         153 GITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN  231 (313)
T ss_dssp             EEECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred             eeecccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999987888776 34444 3667666665543                       34445566778999999999


Q ss_pred             cccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCc-cccc
Q 041953          185 DFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNF-LTGI  261 (279)
Q Consensus       185 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~  261 (279)
                      .+.+.. ..+..+++|+.|++++|.+++.+|..+..+++|++|+|++|+++|.+|. +.++++|+.+++++|+ +.|.
T Consensus       232 ~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         232 SLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             EECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred             cccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCC
Confidence            988554 4678889999999999999999999999999999999999999988884 6888999999999997 6665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=6.9e-24  Score=174.01  Aligned_cols=222  Identities=22%  Similarity=0.290  Sum_probs=144.4

Q ss_pred             CCCCcceeeeeeCCC---------CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEE
Q 041953           37 STPVCNWTGVTCDVH---------SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVS  107 (279)
Q Consensus        37 ~~~~c~~~~~~~~~~---------~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~  107 (279)
                      ....|.|..+.|.+.         .+.+++|++++|.++.+.+..|.++++|++|++++|.+....|..|..+++|++|+
T Consensus         6 ~~c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_           6 FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY   85 (305)
T ss_dssp             TTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCCEecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEec
Confidence            346688999999642         25799999999999976667899999999999999999977788899999999999


Q ss_pred             cccCcccccCCccCCCCCCCcEEEeeccccccccCh--------------------------hhhcCCCCCcEEEeeccc
Q 041953          108 FRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPA--------------------------NICSNLPFLEYLALSQNM  161 (279)
Q Consensus       108 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--------------------------~~~~~~~~L~~L~l~~n~  161 (279)
                      +++|+++ .+|..+  ...++.|++..|.+. .++.                          ..+..+++|+++++.+|.
T Consensus        86 l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~  161 (305)
T d1xkua_          86 LSKNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  161 (305)
T ss_dssp             CCSSCCS-BCCSSC--CTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             ccCCccC-cCccch--hhhhhhhhccccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC
Confidence            9999887 333322  234555555555443 2221                          123345556666666665


Q ss_pred             ccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCcc
Q 041953          162 FHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPRE  241 (279)
Q Consensus       162 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~  241 (279)
                      +. .++..+  .++++.|++++|......+..+..++.++.|++++|.+++..+..+.++++|++|+|++|+++ .+|..
T Consensus       162 l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~  237 (305)
T d1xkua_         162 IT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG  237 (305)
T ss_dssp             CC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT
T ss_pred             cc-ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccc
Confidence            54 233222  345566666666555555555555566666666666665555555555666666666666665 34555


Q ss_pred             ccCCCCCCeEEccCCcccccCcccc
Q 041953          242 WGNLTGLGILQLSDNFLTGITPSSI  266 (279)
Q Consensus       242 ~~~~~~L~~L~l~~n~l~~~~~~~~  266 (279)
                      +..+++|++|++++|+|+.+....|
T Consensus       238 l~~l~~L~~L~Ls~N~i~~i~~~~f  262 (305)
T d1xkua_         238 LADHKYIQVVYLHNNNISAIGSNDF  262 (305)
T ss_dssp             TTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             cccccCCCEEECCCCccCccChhhc
Confidence            6666666666666666665544444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.9e-24  Score=173.82  Aligned_cols=215  Identities=21%  Similarity=0.207  Sum_probs=186.1

Q ss_pred             EEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeecccc
Q 041953           58 LNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTL  137 (279)
Q Consensus        58 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  137 (279)
                      ++.++++++ .+|..+.  +.+++|++++|+|+...+..|..+++|++|++++|++....+..+..+..++.+....+..
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            456677777 5565553  5789999999999865566899999999999999999977777888889999998764443


Q ss_pred             ccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCcc
Q 041953          138 SGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRE  217 (279)
Q Consensus       138 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~  217 (279)
                      ...++...|.++++|++|++++|.+....+..+....+|+.+++++|.++...+..+..+++|+.|++++|.+....+..
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~  172 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA  172 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhh
Confidence            34777777899999999999999988666677888899999999999999777788989999999999999999888889


Q ss_pred             CCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccccccccc
Q 041953          218 SGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKF  275 (279)
Q Consensus       218 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~  275 (279)
                      +.++++|+.+++++|++++..|..|.++++|+.|++++|.+.+.++..|+.++.+..+
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L  230 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL  230 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred             hccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEE
Confidence            9999999999999999998889999999999999999999999999999888766543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.1e-24  Score=172.74  Aligned_cols=198  Identities=25%  Similarity=0.249  Sum_probs=167.3

Q ss_pred             eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEee
Q 041953           54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFG  133 (279)
Q Consensus        54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  133 (279)
                      ....++-++++++ .+|..+.  +++++|++++|.+.+..+..|..+++|++|++++|+++. ++ .+..+++|++|+++
T Consensus        11 ~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLS   85 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECC
T ss_pred             CCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccc
Confidence            4556688888888 4666554  579999999999986666788999999999999999873 33 35678999999999


Q ss_pred             ccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccc
Q 041953          134 FNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGE  213 (279)
Q Consensus       134 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~  213 (279)
                      +|++. ..+.. +.++++|++|+++++.+....+..+..+.+++.|++++|.+....+..+..+++++.+++++|.+++.
T Consensus        86 ~N~l~-~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          86 HNQLQ-SLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             SSCCS-SCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             ccccc-ccccc-cccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence            99987 55544 47899999999999998866777788889999999999999877777778889999999999999977


Q ss_pred             cCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCccc
Q 041953          214 IPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLT  259 (279)
Q Consensus       214 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~  259 (279)
                      .+..+..+++|++|+|++|+++ .+|..+..+++|+.|+|++|++.
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            7788899999999999999998 77888888999999999999875

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.6e-22  Score=162.64  Aligned_cols=178  Identities=25%  Similarity=0.271  Sum_probs=159.6

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF  132 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  132 (279)
                      +.+++|+|++|.++++.+..|.++++|++|++++|.++ .++ .+..+++|++|++++|++. ..+..+..+++|++|++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccccccccccc-ccccccccccccccccc
Confidence            46999999999999877788999999999999999997 444 4578999999999999998 55778889999999999


Q ss_pred             eccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccccc
Q 041953          133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQG  212 (279)
Q Consensus       133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~  212 (279)
                      +++.+. .++...+..+.++++|++.+|.+....+..+..++.++.+++++|.+++..+..+..+++|+.|++++|.++ 
T Consensus       108 ~~~~~~-~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-  185 (266)
T d1p9ag_         108 SFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-  185 (266)
T ss_dssp             CSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             cccccc-eeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-
Confidence            999987 777777789999999999999998666677888999999999999999888888999999999999999998 


Q ss_pred             ccCccCCCCCCCCEEeccCCcCc
Q 041953          213 EIPRESGNLAELELMSLSENELQ  235 (279)
Q Consensus       213 ~~~~~~~~~~~L~~L~l~~n~i~  235 (279)
                      .+|..+..+++|+.|+|++|++.
T Consensus       186 ~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         186 TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccChhHCCCCCCCEEEecCCCCC
Confidence            78888888999999999999865

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=1.1e-20  Score=154.70  Aligned_cols=210  Identities=20%  Similarity=0.236  Sum_probs=168.2

Q ss_pred             eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEee
Q 041953           54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFG  133 (279)
Q Consensus        54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  133 (279)
                      ..+.++=++.+++ .+|..+.  +++++|++++|+++...+..|..+++|++|++++|.+....|..+..+++|++|+++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            3455677777787 5566664  689999999999985555579999999999999999997778889999999999999


Q ss_pred             ccccccccChhhhcCCCCCcEEEeecccccc--------------------------cCCccCCCCccCcEEeccCCccc
Q 041953          134 FNTLSGEIPANICSNLPFLEYLALSQNMFHG--------------------------GIPSALSNCAYLQRLGLSSNDFS  187 (279)
Q Consensus       134 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--------------------------~~~~~l~~l~~L~~L~l~~n~~~  187 (279)
                      +|++. .+|...   ...++.|++..|.+.+                          ..+..+..+++|+.+++++|.+.
T Consensus        88 ~n~l~-~l~~~~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          88 KNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             SSCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCccC-cCccch---hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc
Confidence            99997 777644   4566667666664432                          12233455677888999888877


Q ss_pred             ccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccc
Q 041953          188 GVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIY  267 (279)
Q Consensus       188 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  267 (279)
                      . .+..  ..++|+.|++++|......+..+.+++.++.|++++|++.+..+..+.++++|++|++++|+++++ |+++.
T Consensus       164 ~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p~~l~  239 (305)
T d1xkua_         164 T-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLA  239 (305)
T ss_dssp             S-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTT
T ss_pred             c-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccc-ccccc
Confidence            3 4433  256899999999998888888899999999999999999988888999999999999999999987 56888


Q ss_pred             ccccccc
Q 041953          268 KLLFSIK  274 (279)
Q Consensus       268 ~~~~~~~  274 (279)
                      .++.+..
T Consensus       240 ~l~~L~~  246 (305)
T d1xkua_         240 DHKYIQV  246 (305)
T ss_dssp             TCSSCCE
T ss_pred             cccCCCE
Confidence            8776654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=6.4e-19  Score=139.22  Aligned_cols=214  Identities=17%  Similarity=0.120  Sum_probs=143.4

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccC-CccCCCCCCCcEEEeec-
Q 041953           57 VLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAF-PSFAFNTSSLQYLDFGF-  134 (279)
Q Consensus        57 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~-  134 (279)
                      .++.++.+++ .+|..+.  +++++|++++|.+....+..|.++++|++|++++|.+...+ +..+..+++++++.+.. 
T Consensus        12 ~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          12 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             EEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             EEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            4555666666 4554442  47888888888887444456788888888888888776443 34567788888888764 


Q ss_pred             cccccccChhhhcCCCCCcEEEeecccccccCCc-cCCCCccCcEEeccCCcccccCCcccCCCC-CccEEEccCccccc
Q 041953          135 NTLSGEIPANICSNLPFLEYLALSQNMFHGGIPS-ALSNCAYLQRLGLSSNDFSGVVPKEICNLT-KLKGLYLGGNRLQG  212 (279)
Q Consensus       135 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~n~~~~  212 (279)
                      +.+. ..+...|.++++|+++++.+|.+....+. .+..+..+..+...++.+....+..+..++ .++.+++.+|.++.
T Consensus        89 n~l~-~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          89 NNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             TTCC-EECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccc-ccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence            4554 56666668888888888888877632221 223344455555566666655555555543 67888888888874


Q ss_pred             ccCccCCCCCCCCEE-eccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccccccccc
Q 041953          213 EIPRESGNLAELELM-SLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKF  275 (279)
Q Consensus       213 ~~~~~~~~~~~L~~L-~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~  275 (279)
                      ..+..+ ...++..+ .+++|+++...+..|.++++|++|++++|+++++++..|.+++.++.+
T Consensus       168 i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l  230 (242)
T d1xwdc1         168 IHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR  230 (242)
T ss_dssp             ECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESS
T ss_pred             cccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccC
Confidence            444433 34555444 567777875555668888888888888888888877778777766544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=5.1e-19  Score=148.85  Aligned_cols=209  Identities=23%  Similarity=0.269  Sum_probs=141.5

Q ss_pred             CCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccC-------------
Q 041953           51 HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAF-------------  117 (279)
Q Consensus        51 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~-------------  117 (279)
                      .++++++|++++|.+++. + .++++++|++|++++|.+.+. + .+..+++|+.+++.++.+.+..             
T Consensus        64 ~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~i-~-~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~  139 (384)
T d2omza2          64 YLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL  139 (384)
T ss_dssp             GCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEE
T ss_pred             cCCCCCEEeCcCCcCCCC-c-cccCCcccccccccccccccc-c-ccccccccccccccccccccccccccccccccccc
Confidence            467899999999999854 3 388999999999999999743 2 3778888888888765433100             


Q ss_pred             --------------------------------------------------CccCCC----------------------CC
Q 041953          118 --------------------------------------------------PSFAFN----------------------TS  125 (279)
Q Consensus       118 --------------------------------------------------~~~~~~----------------------l~  125 (279)
                                                                        ......                      .+
T Consensus       140 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~  219 (384)
T d2omza2         140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT  219 (384)
T ss_dssp             EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCT
T ss_pred             ccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCcccccC
Confidence                                                              001112                      24


Q ss_pred             CCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccC---------------
Q 041953          126 SLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVV---------------  190 (279)
Q Consensus       126 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~---------------  190 (279)
                      +|+++++++|.+. .++ . +..+++|+.+++.+|.+++. + .+..+++|+.|+++++.+.+..               
T Consensus       220 ~L~~L~l~~n~l~-~~~-~-l~~l~~L~~L~l~~n~l~~~-~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~  294 (384)
T d2omza2         220 NLDELSLNGNQLK-DIG-T-LASLTNLTDLDLANNQISNL-A-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE  294 (384)
T ss_dssp             TCCEEECCSSCCC-CCG-G-GGGCTTCSEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             CCCEEECCCCCCC-Ccc-h-hhcccccchhccccCccCCC-C-cccccccCCEeeccCcccCCCCccccccccccccccc
Confidence            4555555555544 332 1 24566777777777766532 2 3566677777777776654321               


Q ss_pred             -----CcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccc
Q 041953          191 -----PKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSS  265 (279)
Q Consensus       191 -----~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  265 (279)
                           ...+..+++++.+++++|.+++..  .+..+++|++|++++|++++ ++ .+.++++|++|++++|++++.+|  
T Consensus       295 n~l~~~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--  368 (384)
T d2omza2         295 NQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--  368 (384)
T ss_dssp             SCCSCCGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--
T ss_pred             cccccccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--
Confidence                 122445567788888888877442  36788999999999999974 44 58899999999999999998865  


Q ss_pred             ccccccccc
Q 041953          266 IYKLLFSIK  274 (279)
Q Consensus       266 ~~~~~~~~~  274 (279)
                      +..+++++.
T Consensus       369 l~~l~~L~~  377 (384)
T d2omza2         369 LANLTRITQ  377 (384)
T ss_dssp             GTTCTTCSE
T ss_pred             hccCCCCCE
Confidence            666665543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.5e-19  Score=140.75  Aligned_cols=201  Identities=16%  Similarity=0.099  Sum_probs=153.6

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCC-CccccCCCCCcEEEccc-CcccccCCccCCCCCCCcEE
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSI-PSAIFTTYTLKYVSFRK-NQLSGAFPSFAFNTSSLQYL  130 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L  130 (279)
                      +.+++|++++|.++.+.+..|.++++|++|++++|.+...+ +..|..+++++++.+.. +.+....+..+..+++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            37899999999998777778999999999999999887543 45788999999998865 56766667788999999999


Q ss_pred             EeeccccccccCh-hhhcCCCCCcEEEeecccccccCCccCCCCc-cCcEEeccCCcccccCCcccCCCCCccEE-EccC
Q 041953          131 DFGFNTLSGEIPA-NICSNLPFLEYLALSQNMFHGGIPSALSNCA-YLQRLGLSSNDFSGVVPKEICNLTKLKGL-YLGG  207 (279)
Q Consensus       131 ~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~~~~L~~L-~l~~  207 (279)
                      ++.++.+. ..+. .....+..+..+...++.+....+..+..+. .++.|++.+|.+....+..+ ...++..+ .+.+
T Consensus       109 ~l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~  186 (242)
T d1xwdc1         109 LISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDN  186 (242)
T ss_dssp             EEESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTC
T ss_pred             ccchhhhc-ccccccccccccccccccccccccccccccccccccccceeeecccccccccccccc-cchhhhccccccc
Confidence            99999886 4433 2234456666666677777655556666654 78899999999985544444 44555555 5677


Q ss_pred             cccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccC
Q 041953          208 NRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSD  255 (279)
Q Consensus       208 n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~  255 (279)
                      |.++...+..|.++++|+.|++++|+++...+..|.++++|+.+++.+
T Consensus       187 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             cccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            788755556689999999999999999866666788888877776654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=1.1e-18  Score=136.62  Aligned_cols=186  Identities=22%  Similarity=0.285  Sum_probs=126.8

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF  132 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  132 (279)
                      ..++.|++.+|+++. ++ .+..+++|++|++++|.+.+..  .+..+++++.+++++|.++. + +.+..+++|+++.+
T Consensus        41 ~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeeccc--cccccccccccccccccccc-c-cccccccccccccc
Confidence            467788888888774 33 4777888888888888776432  36777888888888877652 2 34667778888888


Q ss_pred             eccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccccc
Q 041953          133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQG  212 (279)
Q Consensus       133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~  212 (279)
                      +++... .+..  +...+.++.+.+..+.+...  ..+..+++|+.|++++|.+.+.  ..+.++++|+.|++++|.+++
T Consensus       115 ~~~~~~-~~~~--~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         115 TSTQIT-DVTP--LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             TTSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred             cccccc-ccch--hccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCccCC
Confidence            777665 3322  24567777777777766522  2456667788888877776532  236677778888888877764


Q ss_pred             ccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccC
Q 041953          213 EIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSD  255 (279)
Q Consensus       213 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~  255 (279)
                       ++ .+..+++|++|++++|++++. + .+.++++|+.|++++
T Consensus       188 -l~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         188 -IS-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             -CG-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             -Ch-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence             32 366777888888888877743 3 367777888887763

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=7.8e-19  Score=137.45  Aligned_cols=201  Identities=19%  Similarity=0.268  Sum_probs=159.1

Q ss_pred             EEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeec
Q 041953           55 VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGF  134 (279)
Q Consensus        55 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  134 (279)
                      +..++++.+.+++..  .++.+.+|+.|++.+|.+.. + ..+..+++|++|++++|.+.+..  .+..+++++++++++
T Consensus        21 ~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~   94 (227)
T d1h6ua2          21 AIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSG   94 (227)
T ss_dssp             HHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCS
T ss_pred             HHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc--ccccccccccccccc
Confidence            344566666666443  45667899999999999984 4 35889999999999999987543  378999999999999


Q ss_pred             cccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccccccc
Q 041953          135 NTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEI  214 (279)
Q Consensus       135 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~  214 (279)
                      |.+. .++.  +.++++|+.++++++...+  ...+...+.++.+.++++.+...  ..+...++|+.|++++|.+.+. 
T Consensus        95 n~~~-~i~~--l~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~-  166 (227)
T d1h6ua2          95 NPLK-NVSA--IAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL-  166 (227)
T ss_dssp             CCCS-CCGG--GTTCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC-
T ss_pred             cccc-cccc--ccccccccccccccccccc--cchhccccchhhhhchhhhhchh--hhhccccccccccccccccccc-
Confidence            9886 6553  3689999999999987753  23466778899999999887643  3356778999999999998643 


Q ss_pred             CccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccccccccc
Q 041953          215 PRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK  274 (279)
Q Consensus       215 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  274 (279)
                       ..+.++++|+.|++++|++++ ++ .+.++++|+.|++++|+++++.|  ++.++.++.
T Consensus       167 -~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~  221 (227)
T d1h6ua2         167 -TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFI  221 (227)
T ss_dssp             -GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCE
T ss_pred             -hhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCE
Confidence             347889999999999999985 33 48899999999999999998765  666665543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=3.4e-18  Score=143.75  Aligned_cols=189  Identities=26%  Similarity=0.372  Sum_probs=156.7

Q ss_pred             CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953           52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD  131 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  131 (279)
                      .+++..++++++.+++..|  +..+++|++|++++|.+.+  ...+..+++|+.+++++|.+.+..  .+..+++|++++
T Consensus       196 l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~  269 (384)
T d2omza2         196 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELK  269 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEE
T ss_pred             ccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCC--cccccccCCEee
Confidence            4578889999998886544  4567899999999999873  346788999999999999987532  377889999999


Q ss_pred             eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc
Q 041953          132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ  211 (279)
Q Consensus       132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~  211 (279)
                      ++++++. .++.  +..++.++.+.+..|.+.+  ...+..+++++.|++++|.+.+..  .+..+++|+.|++++|.++
T Consensus       270 l~~~~l~-~~~~--~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~  342 (384)
T d2omza2         270 LGANQIS-NISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS  342 (384)
T ss_dssp             CCSSCCC-CCGG--GTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC
T ss_pred             ccCcccC-CCCc--ccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC
Confidence            9999987 5543  3678999999999998873  235778889999999999998653  3778999999999999997


Q ss_pred             cccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCc
Q 041953          212 GEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNF  257 (279)
Q Consensus       212 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~  257 (279)
                      + ++ .+.++++|++|++++|++++..|  +.++++|+.|+|++|+
T Consensus       343 ~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         343 D-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             C-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             C-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence            4 33 68899999999999999986654  8999999999999984

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=3.2e-18  Score=132.26  Aligned_cols=166  Identities=22%  Similarity=0.285  Sum_probs=118.5

Q ss_pred             CCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcE
Q 041953           75 NLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEY  154 (279)
Q Consensus        75 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  154 (279)
                      .+..|+.|+++++.+.. ++ .+..+++|++|++++|++++. + .+..+++|++|++++|++. .++.  +..+++|+.
T Consensus        44 ~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~-~l~~--l~~l~~L~~  116 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVK-DLSS--LKDLKKLKS  116 (210)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CGGG--GTTCTTCCE
T ss_pred             HhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccc-cccc--ccccccccc
Confidence            34567777777777763 22 356677777777777777642 2 3567778888888888776 5553  366788888


Q ss_pred             EEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcC
Q 041953          155 LALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENEL  234 (279)
Q Consensus       155 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i  234 (279)
                      |++.+|.+. .+ ..+..++.++.+++++|.+.+  +..+..+++|+.+++++|.+++. + .+..+++|+.|++++|++
T Consensus       117 L~l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         117 LSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHI  190 (210)
T ss_dssp             EECTTSCCC-CC-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCC
T ss_pred             ccccccccc-cc-ccccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCC
Confidence            888887765 22 356677788888888887763  33456678888888888888743 3 377888899999999888


Q ss_pred             cccCCccccCCCCCCeEEccC
Q 041953          235 QGAIPREWGNLTGLGILQLSD  255 (279)
Q Consensus       235 ~~~~~~~~~~~~~L~~L~l~~  255 (279)
                      ++ ++ .+.++++|++|++++
T Consensus       191 ~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         191 SD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CB-CG-GGTTCTTCSEEEEEE
T ss_pred             CC-Ch-hhcCCCCCCEEEccC
Confidence            74 44 588888899888864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1.1e-17  Score=128.03  Aligned_cols=160  Identities=27%  Similarity=0.325  Sum_probs=76.4

Q ss_pred             CCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEE
Q 041953           76 LSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYL  155 (279)
Q Consensus        76 l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  155 (279)
                      +.++++|+++++.+.. + +.+..+++|++|++++|++++..  .+..+++|++|++++|.+. .++.  +.+++.|+.+
T Consensus        39 l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~-~~~~--l~~l~~L~~L  111 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DITP--LANLTNLTGL  111 (199)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEE
T ss_pred             hcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCcc--cccCCcccccccccccccc-cccc--cccccccccc
Confidence            4555556665555542 2 22445555555555555554321  2445555555555555543 3332  2445555555


Q ss_pred             EeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCc
Q 041953          156 ALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ  235 (279)
Q Consensus       156 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~  235 (279)
                      +++++....  ...+..+++|+.|++++|.+.. . +.+..+++++.|++.+|.+++.  ..+.++++|++|++++|+++
T Consensus       112 ~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         112 TLFNNQITD--IDPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             ECCSSCCCC--CGGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccc--ccccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCCC
Confidence            555554431  1234445555555555555432 1 2344445555555555555422  12445555555555555554


Q ss_pred             ccCCccccCCCCCCe
Q 041953          236 GAIPREWGNLTGLGI  250 (279)
Q Consensus       236 ~~~~~~~~~~~~L~~  250 (279)
                      + ++ .+.++++|++
T Consensus       186 ~-i~-~l~~L~~L~~  198 (199)
T d2omxa2         186 D-IS-VLAKLTNLES  198 (199)
T ss_dssp             C-CG-GGGGCTTCSE
T ss_pred             C-Cc-cccCCCCCCc
Confidence            2 22 3444555544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=1e-18  Score=133.20  Aligned_cols=170  Identities=23%  Similarity=0.283  Sum_probs=122.0

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEEccCCcccC-CCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeecc
Q 041953           57 VLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSG-SIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFN  135 (279)
Q Consensus        57 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  135 (279)
                      .++.++++++ .+|..+.  +++++|++++|.|+. ..+..|..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            4566777777 4565553  689999999999975 44567788999999999999998777888888999999999999


Q ss_pred             ccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCC-cccCCCCCccEEEccCccccccc
Q 041953          136 TLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVP-KEICNLTKLKGLYLGGNRLQGEI  214 (279)
Q Consensus       136 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~  214 (279)
                      ++. .++...|.++++|++|++++|.++...+..|..+++|++|++++|.+..... .++.  ..++.+.+..+.++...
T Consensus        89 ~l~-~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_          89 KIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             CCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCS
T ss_pred             ccc-ccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeCC
Confidence            997 7888888889999999999999987777788888889999998887753221 1111  12334444444444333


Q ss_pred             CccCCCCCCCCEEeccCCcCc
Q 041953          215 PRESGNLAELELMSLSENELQ  235 (279)
Q Consensus       215 ~~~~~~~~~L~~L~l~~n~i~  235 (279)
                      |.   .+..++.++|+.+.+.
T Consensus       166 p~---~l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         166 PS---KVRDVQIKDLPHSEFK  183 (192)
T ss_dssp             ST---TTTTSBGGGSCTTTCC
T ss_pred             Ch---hhcCCEeeecCHhhCc
Confidence            33   2334445555555543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=3.2e-18  Score=130.37  Aligned_cols=171  Identities=19%  Similarity=0.188  Sum_probs=110.6

Q ss_pred             CEEEccCCcccCCCCccccCCCCCcEEEcccCcccccC-CccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEee
Q 041953           80 QSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAF-PSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS  158 (279)
Q Consensus        80 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  158 (279)
                      ++++.+++.++ .+|..+  .+++++|++++|+++... +..|..+++|++|++++|.+. .++...|..+++|++|+++
T Consensus        11 ~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-cccccccccccccceeeec
Confidence            46777777776 566543  256788888888776433 445667777888888777776 5566666777777888887


Q ss_pred             cccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCc-cCCCCCCCCEEeccCCcCccc
Q 041953          159 QNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPR-ESGNLAELELMSLSENELQGA  237 (279)
Q Consensus       159 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~  237 (279)
                      +|.+....+..|..+++|++|++++|.++...+..|..+++|+++++++|.+...... ++.  ..++.+.+..+.++..
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~  164 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCG  164 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeC
Confidence            7777766666777777777777777777766666777777777777777776532211 111  2244445555555544


Q ss_pred             CCccccCCCCCCeEEccCCccc
Q 041953          238 IPREWGNLTGLGILQLSDNFLT  259 (279)
Q Consensus       238 ~~~~~~~~~~L~~L~l~~n~l~  259 (279)
                      .|..+   .+++.++++.|.+.
T Consensus       165 ~p~~l---~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         165 APSKV---RDVQIKDLPHSEFK  183 (192)
T ss_dssp             SSTTT---TTSBGGGSCTTTCC
T ss_pred             CChhh---cCCEeeecCHhhCc
Confidence            44333   34455566666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=2.5e-17  Score=127.15  Aligned_cols=164  Identities=23%  Similarity=0.345  Sum_probs=136.3

Q ss_pred             CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953           53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF  132 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  132 (279)
                      ..+++|+++++.++.. + .+..+++|++|++++|++++. + .+..+++|++|++++|+++. ++ .+..+++|+.+++
T Consensus        46 ~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-ccccccccccccc
Confidence            4689999999999843 3 378899999999999999853 3 36789999999999999984 33 5788999999999


Q ss_pred             eccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccccc
Q 041953          133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQG  212 (279)
Q Consensus       133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~  212 (279)
                      ++|.+. .++.  +..++.++.+++++|.+++  +..+..+++|+.+++++|.+.+. + .+.++++|+.|++++|.+++
T Consensus       120 ~~~~~~-~~~~--l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         120 EHNGIS-DING--LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             TTSCCC-CCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB
T ss_pred             cccccc-cccc--ccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC
Confidence            999886 5543  3679999999999999863  34567789999999999999853 3 37889999999999999974


Q ss_pred             ccCccCCCCCCCCEEeccC
Q 041953          213 EIPRESGNLAELELMSLSE  231 (279)
Q Consensus       213 ~~~~~~~~~~~L~~L~l~~  231 (279)
                       ++ .+.++++|++|+|++
T Consensus       193 -l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 -LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -CG-GGTTCTTCSEEEEEE
T ss_pred             -Ch-hhcCCCCCCEEEccC
Confidence             44 688999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=4.9e-17  Score=124.40  Aligned_cols=177  Identities=22%  Similarity=0.273  Sum_probs=141.3

Q ss_pred             EEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecc
Q 041953           81 SLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQN  160 (279)
Q Consensus        81 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n  160 (279)
                      ...+..+.+.+..  ....++++++|++++|.+.. + +.+..+++|++|++++|++. .++.  +.++++|++|++++|
T Consensus        22 ~~~l~~~~~~~~~--~~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~-~~~~--l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          22 KTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNN   94 (199)
T ss_dssp             HHHTTCSSTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSS
T ss_pred             HHHhCCCCCCCcc--CHHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCcccccccc-Cccc--ccCCccccccccccc
Confidence            3455666665433  23567899999999999874 3 45778999999999999997 5554  478999999999999


Q ss_pred             cccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCc
Q 041953          161 MFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPR  240 (279)
Q Consensus       161 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~  240 (279)
                      .+. .++ .+..++.|+.|+++++.....  ..+..+++|+.+++++|.+. .+ ..+..+++++.|++.+|++++. + 
T Consensus        95 ~~~-~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~-~~l~~~~~L~~L~l~~n~l~~l-~-  166 (199)
T d2omxa2          95 QIA-DIT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DI-SALSGLTSLQQLNFSSNQVTDL-K-  166 (199)
T ss_dssp             CCC-CCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CC-GGGTTCTTCSEEECCSSCCCCC-G-
T ss_pred             ccc-ccc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhc-cc-ccccccccccccccccccccCC-c-
Confidence            886 333 588899999999999987643  34778899999999999986 33 3578899999999999999854 3 


Q ss_pred             cccCCCCCCeEEccCCcccccCcccccccccccc
Q 041953          241 EWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK  274 (279)
Q Consensus       241 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  274 (279)
                      .+.++++|+.|++++|+++++.  .++.+++++.
T Consensus       167 ~l~~l~~L~~L~ls~N~i~~i~--~l~~L~~L~~  198 (199)
T d2omxa2         167 PLANLTTLERLDISSNKVSDIS--VLAKLTNLES  198 (199)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSE
T ss_pred             cccCCCCCCEEECCCCCCCCCc--cccCCCCCCc
Confidence            4889999999999999998863  4666665543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.3e-17  Score=134.80  Aligned_cols=222  Identities=18%  Similarity=0.207  Sum_probs=162.1

Q ss_pred             CCeEEEEEcCCCCcccc-CcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCc-cccc-CCccCCCCCCCc
Q 041953           52 SHRVTVLNISRLNLTGT-IPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQ-LSGA-FPSFAFNTSSLQ  128 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~-~~~~-~~~~~~~l~~L~  128 (279)
                      ..++++|+++++.++.. +...+..+++|++|+++++.+.+..+..+..+++|++|++++|. ++.. +...+..+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            34799999999987643 34557889999999999999887777788899999999999974 4321 122245679999


Q ss_pred             EEEeeccc-cccc-cChhhhcCCCCCcEEEeeccc--cccc-CCccCCCCccCcEEeccCC-cccccCCcccCCCCCccE
Q 041953          129 YLDFGFNT-LSGE-IPANICSNLPFLEYLALSQNM--FHGG-IPSALSNCAYLQRLGLSSN-DFSGVVPKEICNLTKLKG  202 (279)
Q Consensus       129 ~L~l~~n~-~~~~-~~~~~~~~~~~L~~L~l~~n~--l~~~-~~~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~  202 (279)
                      +|+++++. +... +...+....++|+.|+++++.  +++. +......+++|++|++++| .+++.....+..+++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            99999874 3322 222333456889999998753  3321 2223356789999999986 467667777888999999


Q ss_pred             EEccCc-ccccccCccCCCCCCCCEEeccCCcCccc-CCccccCCCCCCeEEccCCcccccCccccccccccccccc
Q 041953          203 LYLGGN-RLQGEIPRESGNLAELELMSLSENELQGA-IPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKFGT  277 (279)
Q Consensus       203 L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~  277 (279)
                      |++++| .+++.....+..+++|+.|+++++ +.+. +......+|+|+   +..+.+++..+++++.......||-
T Consensus       205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~~~~~~iw~~  277 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGNKKNQEIWGI  277 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSSTTCCCBTTB
T ss_pred             EECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCCCCCccCccccchhccc
Confidence            999996 466655667788999999999998 4322 222234566654   6788999999999998887777774

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.3e-15  Score=112.23  Aligned_cols=111  Identities=19%  Similarity=0.121  Sum_probs=73.9

Q ss_pred             ccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCC
Q 041953           73 LGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFL  152 (279)
Q Consensus        73 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L  152 (279)
                      |.+..++++|++++|+|+ .++..+..+++|++|++++|.+.. + +.+..+++|++|++++|++. .++...+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhccccccc-CCCcccccccccc
Confidence            456667777777777776 445556667777777777777763 3 34667777777777777776 6666655667777


Q ss_pred             cEEEeecccccccC-CccCCCCccCcEEeccCCccc
Q 041953          153 EYLALSQNMFHGGI-PSALSNCAYLQRLGLSSNDFS  187 (279)
Q Consensus       153 ~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~  187 (279)
                      ++|++++|.+.... ...+..+++|++|++++|.+.
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccc
Confidence            77777777765221 134555666666666666654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.58  E-value=8.7e-14  Score=114.85  Aligned_cols=191  Identities=26%  Similarity=0.303  Sum_probs=112.6

Q ss_pred             CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953           52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD  131 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  131 (279)
                      .+++++|++++|+++ .+|..   +.+|+.|++++|.+. .++.   -.+.|++|++++|.+. .+|. +..+++|++++
T Consensus        57 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~---lp~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~  126 (353)
T d1jl5a_          57 PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD---LPPLLEYLGVSNNQLE-KLPE-LQNSSFLKIID  126 (353)
T ss_dssp             CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS---CCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEE
T ss_pred             CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh---hccccccccccccccc-cccc-hhhhccceeec
Confidence            346778888888777 45544   356778888887776 3332   1245888888888887 4454 46788899998


Q ss_pred             eeccccccccChh------------------hhcCCCCCcEEEeeccccccc------------------CCccCCCCcc
Q 041953          132 FGFNTLSGEIPAN------------------ICSNLPFLEYLALSQNMFHGG------------------IPSALSNCAY  175 (279)
Q Consensus       132 l~~n~~~~~~~~~------------------~~~~~~~L~~L~l~~n~l~~~------------------~~~~l~~l~~  175 (279)
                      +.++.+. ..+..                  .+..++.++.+++..|.....                  ....+..++.
T Consensus       127 l~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~  205 (353)
T d1jl5a_         127 VDNNSLK-KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF  205 (353)
T ss_dssp             CCSSCCS-CCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTT
T ss_pred             ccccccc-ccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccccccccccccccccc
Confidence            8877654 11110                  112344555565555433210                  0011233445


Q ss_pred             CcEEeccCCccccc--------------------------------------------------------CCcccCCCCC
Q 041953          176 LQRLGLSSNDFSGV--------------------------------------------------------VPKEICNLTK  199 (279)
Q Consensus       176 L~~L~l~~n~~~~~--------------------------------------------------------~~~~l~~~~~  199 (279)
                      ++.+++++|.....                                                        .+.....+++
T Consensus       206 L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  285 (353)
T d1jl5a_         206 LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPS  285 (353)
T ss_dssp             CCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccCccccccccCCC
Confidence            55555554432100                                                        0000112356


Q ss_pred             ccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCccccc
Q 041953          200 LKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGI  261 (279)
Q Consensus       200 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~  261 (279)
                      |++|++++|.++ .+|.   .+++|+.|++++|+++ .+|..   +++|+.|++++|+++.+
T Consensus       286 L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~~l  339 (353)
T d1jl5a_         286 LEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLREF  339 (353)
T ss_dssp             CCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSSC
T ss_pred             CCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCCCC
Confidence            788888888876 4553   3567888888888887 45542   45788888888888765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.8e-16  Score=126.79  Aligned_cols=182  Identities=20%  Similarity=0.165  Sum_probs=136.5

Q ss_pred             CCCCCCEEEccCCcccCC-CCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeecc-ccccccChhhhcCCCCC
Q 041953           75 NLSSLQSLNLSCNRLSGS-IPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFN-TLSGEIPANICSNLPFL  152 (279)
Q Consensus        75 ~l~~L~~L~l~~~~i~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~L  152 (279)
                      ...+|++|+++++.+.+. +...+..+++|++|++++|.+....+..+..+++|++|+++++ .++......+..++++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            446899999999988643 4455788999999999999987666677888999999999996 44422223344678999


Q ss_pred             cEEEeeccc-cccc-CCccCC-CCccCcEEeccCCc--cccc-CCcccCCCCCccEEEccCcc-cccccCccCCCCCCCC
Q 041953          153 EYLALSQNM-FHGG-IPSALS-NCAYLQRLGLSSND--FSGV-VPKEICNLTKLKGLYLGGNR-LQGEIPRESGNLAELE  225 (279)
Q Consensus       153 ~~L~l~~n~-l~~~-~~~~l~-~l~~L~~L~l~~n~--~~~~-~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~  225 (279)
                      ++|++++|. +++. ....+. ..+.|+.|+++++.  +.+. ......++++|++|++++|. +++.....+..+++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            999999864 3321 112222 24689999998753  3322 22233567899999999975 6766677788899999


Q ss_pred             EEeccCC-cCcccCCccccCCCCCCeEEccCC
Q 041953          226 LMSLSEN-ELQGAIPREWGNLTGLGILQLSDN  256 (279)
Q Consensus       226 ~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n  256 (279)
                      +|++++| .+++.....+.++++|+.|+++++
T Consensus       204 ~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            9999996 677666667889999999999988

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.1e-15  Score=110.19  Aligned_cols=129  Identities=16%  Similarity=0.113  Sum_probs=96.7

Q ss_pred             CCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCc
Q 041953          121 AFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKL  200 (279)
Q Consensus       121 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L  200 (279)
                      +.+..++++|++++|++. .++. .+..+++|+.|++++|.++. + +.+..+++|++|++++|.+....+..+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            446778889999999887 6764 44678889999999998873 3 357788889999999998886555555678888


Q ss_pred             cEEEccCcccccccC-ccCCCCCCCCEEeccCCcCcccC---CccccCCCCCCeEEc
Q 041953          201 KGLYLGGNRLQGEIP-RESGNLAELELMSLSENELQGAI---PREWGNLTGLGILQL  253 (279)
Q Consensus       201 ~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~---~~~~~~~~~L~~L~l  253 (279)
                      +.|++++|.+..... ..+..+++|++|++++|+++...   +..+..+|+|+.||-
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            999999888864322 45677888899999988886332   124677888888773

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=1.1e-14  Score=102.28  Aligned_cols=104  Identities=24%  Similarity=0.271  Sum_probs=66.5

Q ss_pred             cEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCC
Q 041953          153 EYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSEN  232 (279)
Q Consensus       153 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  232 (279)
                      ++|++++|.++ .++ .+..+++|++|++++|.+. ..|+.+..+++|+.|++++|.+++ +| .+..+++|+.|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            35666666665 333 3566666777777777666 345556666677777777777663 33 4666777777777777


Q ss_pred             cCcccC-CccccCCCCCCeEEccCCccccc
Q 041953          233 ELQGAI-PREWGNLTGLGILQLSDNFLTGI  261 (279)
Q Consensus       233 ~i~~~~-~~~~~~~~~L~~L~l~~n~l~~~  261 (279)
                      +++... ...+..+++|+.+++++|+++..
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            776432 24566777777777777777654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=1.6e-14  Score=101.38  Aligned_cols=101  Identities=29%  Similarity=0.305  Sum_probs=68.1

Q ss_pred             EEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccc
Q 041953           57 VLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNT  136 (279)
Q Consensus        57 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  136 (279)
                      +|++++|+++ .++ .+..+++|++|++++|.+. .+|..+..+++|++|++++|.++. + +.+..+++|+++++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-V-DGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-C-GGGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-c-CccccccccCeEECCCCc
Confidence            5777777776 333 3677777788888877776 566667777777777777777763 3 246677777777777777


Q ss_pred             cccccCh-hhhcCCCCCcEEEeeccccc
Q 041953          137 LSGEIPA-NICSNLPFLEYLALSQNMFH  163 (279)
Q Consensus       137 ~~~~~~~-~~~~~~~~L~~L~l~~n~l~  163 (279)
                      +. .++. ..+..+++|+++++++|.++
T Consensus        77 i~-~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQ-QSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CC-SSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cC-CCCCchhhcCCCCCCEEECCCCcCC
Confidence            75 4432 23356667777777766665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=9e-15  Score=121.06  Aligned_cols=210  Identities=18%  Similarity=0.176  Sum_probs=122.6

Q ss_pred             CCeEEEEEcCCCCccc----------cCcccccCCCCCCEEEccCCcccCC----CCccccCCCCCcEEEcccCcccccC
Q 041953           52 SHRVTVLNISRLNLTG----------TIPSQLGNLSSLQSLNLSCNRLSGS----IPSAIFTTYTLKYVSFRKNQLSGAF  117 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~----------~~~~~~~~l~~L~~L~l~~~~i~~~----~~~~~~~~~~L~~L~l~~n~~~~~~  117 (279)
                      .++++.++++++....          .+...+..+++|+.|++++|.+...    +...+..+++|++|++++|.+....
T Consensus        58 ~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~  137 (344)
T d2ca6a1          58 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA  137 (344)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred             CCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccc
Confidence            3466666666554321          1122344556677777777766543    2223345567777777776653110


Q ss_pred             C-------------ccCCCCCCCcEEEeeccccccccC---hhhhcCCCCCcEEEeeccccccc-----CCccCCCCccC
Q 041953          118 P-------------SFAFNTSSLQYLDFGFNTLSGEIP---ANICSNLPFLEYLALSQNMFHGG-----IPSALSNCAYL  176 (279)
Q Consensus       118 ~-------------~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~~L~~L~l~~n~l~~~-----~~~~l~~l~~L  176 (279)
                      .             ......+.|+.+.+++|.+.....   ...+...+.|++|++++|.+...     +...+..+++|
T Consensus       138 ~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L  217 (344)
T d2ca6a1         138 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL  217 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred             cccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhh
Confidence            0             001244567777777766542111   11224567788888888876531     23445667788


Q ss_pred             cEEeccCCccccc----CCcccCCCCCccEEEccCcccccccC----ccCC--CCCCCCEEeccCCcCcccC----Cccc
Q 041953          177 QRLGLSSNDFSGV----VPKEICNLTKLKGLYLGGNRLQGEIP----RESG--NLAELELMSLSENELQGAI----PREW  242 (279)
Q Consensus       177 ~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~----~~~~--~~~~L~~L~l~~n~i~~~~----~~~~  242 (279)
                      +.|++++|.+...    +...+..+++|++|++++|.+.+...    ..+.  ..+.|++|++++|+|....    ...+
T Consensus       218 ~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l  297 (344)
T d2ca6a1         218 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI  297 (344)
T ss_dssp             CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHH
Confidence            8888888877532    22345667788888888888764322    1221  2367888888888876422    2223


Q ss_pred             -cCCCCCCeEEccCCccccc
Q 041953          243 -GNLTGLGILQLSDNFLTGI  261 (279)
Q Consensus       243 -~~~~~L~~L~l~~n~l~~~  261 (279)
                       .+++.|+.|++++|.+...
T Consensus       298 ~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         298 DEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HHHCTTCCEEECTTSBSCTT
T ss_pred             HccCCCCCEEECCCCcCCCc
Confidence             2567888888888888654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.40  E-value=2.2e-14  Score=118.65  Aligned_cols=212  Identities=16%  Similarity=0.152  Sum_probs=152.6

Q ss_pred             CCeEEEEEcCCCCccc----cCcccccCCCCCCEEEccCCcccCC----------CCccccCCCCCcEEEcccCccccc-
Q 041953           52 SHRVTVLNISRLNLTG----TIPSQLGNLSSLQSLNLSCNRLSGS----------IPSAIFTTYTLKYVSFRKNQLSGA-  116 (279)
Q Consensus        52 ~~~l~~L~l~~~~l~~----~~~~~~~~l~~L~~L~l~~~~i~~~----------~~~~~~~~~~L~~L~l~~n~~~~~-  116 (279)
                      ...++.|+|++|.+..    .+...+...+.|+.++++++.....          +...+..+++|+.|++++|.+... 
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            3468899999998864    2445677789999999998765411          223345678999999999988643 


Q ss_pred             ---CCccCCCCCCCcEEEeeccccccccCh------------hhhcCCCCCcEEEeeccccccc----CCccCCCCccCc
Q 041953          117 ---FPSFAFNTSSLQYLDFGFNTLSGEIPA------------NICSNLPFLEYLALSQNMFHGG----IPSALSNCAYLQ  177 (279)
Q Consensus       117 ---~~~~~~~l~~L~~L~l~~n~~~~~~~~------------~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~  177 (279)
                         +...+...++|++|++++|.+......            ......+.|+.+.+++|.+...    +...+..++.++
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence               223445678999999999987521111            1124678899999999887632    223455678899


Q ss_pred             EEeccCCccccc-----CCcccCCCCCccEEEccCcccccc----cCccCCCCCCCCEEeccCCcCcccCCc----ccc-
Q 041953          178 RLGLSSNDFSGV-----VPKEICNLTKLKGLYLGGNRLQGE----IPRESGNLAELELMSLSENELQGAIPR----EWG-  243 (279)
Q Consensus       178 ~L~l~~n~~~~~-----~~~~l~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~i~~~~~~----~~~-  243 (279)
                      +|++++|.+...     ....+...++|+.|++++|.++..    +...+...++|++|+|++|.+.+....    .+. 
T Consensus       190 ~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~  269 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  269 (344)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             ccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhh
Confidence            999999988642     234566778999999999987642    345567789999999999998754322    233 


Q ss_pred             -CCCCCCeEEccCCcccccCc
Q 041953          244 -NLTGLGILQLSDNFLTGITP  263 (279)
Q Consensus       244 -~~~~L~~L~l~~n~l~~~~~  263 (279)
                       ..+.|++|++++|.+.....
T Consensus       270 ~~~~~L~~L~ls~N~i~~~~~  290 (344)
T d2ca6a1         270 LENIGLQTLRLQYNEIELDAV  290 (344)
T ss_dssp             CSSCCCCEEECCSSCCBHHHH
T ss_pred             ccCCCCCEEECCCCcCChHHH
Confidence             34689999999999877543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.7e-12  Score=92.75  Aligned_cols=106  Identities=17%  Similarity=0.072  Sum_probs=60.7

Q ss_pred             CCcEEEeeccccccccChhhhcCCCCCcEEEeecc-cccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEE
Q 041953          126 SLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQN-MFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLY  204 (279)
Q Consensus       126 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~  204 (279)
                      ..+.++..++.+. ..|..+ ..+++|++|++.++ .++...+..|..+++|+.|++++|.++...+..|..+++|+.|+
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l-~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTS-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCeEEecCCCCc-cCcccc-cCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            3445566655554 455444 45666666666544 35544445566666666666666666655555666666666666


Q ss_pred             ccCcccccccCccCCCCCCCCEEeccCCcC
Q 041953          205 LGGNRLQGEIPRESGNLAELELMSLSENEL  234 (279)
Q Consensus       205 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i  234 (279)
                      +++|.++...+..+. ...|+.|+|++|++
T Consensus        87 Ls~N~l~~l~~~~~~-~~~l~~L~L~~Np~  115 (156)
T d2ifga3          87 LSFNALESLSWKTVQ-GLSLQELVLSGNPL  115 (156)
T ss_dssp             CCSSCCSCCCSTTTC-SCCCCEEECCSSCC
T ss_pred             ccCCCCcccChhhhc-cccccccccCCCcc
Confidence            666666533333332 33566666666655

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.34  E-value=9.5e-15  Score=111.20  Aligned_cols=109  Identities=25%  Similarity=0.266  Sum_probs=42.6

Q ss_pred             ccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccC
Q 041953           97 IFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYL  176 (279)
Q Consensus        97 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L  176 (279)
                      +..+++|++|++++|++.. + +.+..+++|++|++++|.+. .++... ..+++|++|++++|.++. + ..+..+++|
T Consensus        44 l~~L~~L~~L~Ls~n~I~~-i-~~l~~l~~L~~L~Ls~N~i~-~i~~~~-~~~~~L~~L~l~~N~i~~-l-~~~~~l~~L  117 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEK-I-SSLSGMENLRILSLGRNLIK-KIENLD-AVADTLEELWISYNQIAS-L-SGIEKLVNL  117 (198)
T ss_dssp             HHHTTTCCEEECSEEEESC-C-CCHHHHTTCCEEECCEEEEC-SCSSHH-HHHHHCCEEECSEEECCC-H-HHHHHHHHS
T ss_pred             HhcccccceeECcccCCCC-c-ccccCCccccChhhcccccc-cccccc-cccccccccccccccccc-c-ccccccccc
Confidence            3334444444444444431 1 12333444444444444443 333211 223344444444444431 1 123334444


Q ss_pred             cEEeccCCcccccCC-cccCCCCCccEEEccCcccc
Q 041953          177 QRLGLSSNDFSGVVP-KEICNLTKLKGLYLGGNRLQ  211 (279)
Q Consensus       177 ~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~  211 (279)
                      +.|++++|.+..... ..+..+++|+.|++++|++.
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccccchhccccccccccCCCccceeecCCCccc
Confidence            444444444432111 22344444444444444443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.34  E-value=5.7e-15  Score=112.45  Aligned_cols=136  Identities=21%  Similarity=0.226  Sum_probs=99.7

Q ss_pred             CCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCC
Q 041953          117 FPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICN  196 (279)
Q Consensus       117 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~  196 (279)
                      ++..+..+++|++|++++|.+. .++.  +.++++|++|++++|.++ .++.....+++|+.|++++|.++..  +.+..
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~-~i~~--l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~  113 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIE-KISS--LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEK  113 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEES-CCCC--HHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHH
T ss_pred             hhhHHhcccccceeECcccCCC-Cccc--ccCCccccChhhcccccc-ccccccccccccccccccccccccc--ccccc
Confidence            3455677889999999999987 6653  467889999999999887 5554444456789999999988743  34667


Q ss_pred             CCCccEEEccCcccccccC-ccCCCCCCCCEEeccCCcCcccCCcc----------ccCCCCCCeEEccCCcccc
Q 041953          197 LTKLKGLYLGGNRLQGEIP-RESGNLAELELMSLSENELQGAIPRE----------WGNLTGLGILQLSDNFLTG  260 (279)
Q Consensus       197 ~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~----------~~~~~~L~~L~l~~n~l~~  260 (279)
                      +++|+.|++++|.++.... ..+..+++|+.|++++|++....+..          +..+|+|+.||  +.+++.
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~~  186 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGTT
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCCH
Confidence            7889999999998874322 45788899999999999876443321          45688888876  444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.34  E-value=4.5e-11  Score=98.16  Aligned_cols=196  Identities=27%  Similarity=0.361  Sum_probs=133.6

Q ss_pred             eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEee
Q 041953           54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFG  133 (279)
Q Consensus        54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  133 (279)
                      ++++|++++++++ .+|+.   .++|++|++++|+++ .+|..   +.+|+.|++++|.++ .++..   .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---cccccccccc
Confidence            5789999999998 46653   478999999999998 66754   468999999999887 33322   2469999999


Q ss_pred             ccccccccChhhhcCCCCCcEEEeecccccccC------------------CccCCCCccCcEEeccCCccccc------
Q 041953          134 FNTLSGEIPANICSNLPFLEYLALSQNMFHGGI------------------PSALSNCAYLQRLGLSSNDFSGV------  189 (279)
Q Consensus       134 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~------------------~~~l~~l~~L~~L~l~~n~~~~~------  189 (279)
                      +|.+. .+|.  +..+++|+++++.++.+....                  ...+..++.++.+.+.+|.....      
T Consensus       107 ~n~l~-~lp~--~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~  183 (353)
T d1jl5a_         107 NNQLE-KLPE--LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLS  183 (353)
T ss_dssp             SSCCS-SCCC--CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTT
T ss_pred             ccccc-cccc--hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccc
Confidence            99997 7775  367999999999988765211                  11234456677787776654321      


Q ss_pred             ------------CCcccCCCCCccEEEccCcccccc--------------------------------------------
Q 041953          190 ------------VPKEICNLTKLKGLYLGGNRLQGE--------------------------------------------  213 (279)
Q Consensus       190 ------------~~~~l~~~~~L~~L~l~~n~~~~~--------------------------------------------  213 (279)
                                  ....+..++.++.+++++|.....                                            
T Consensus       184 ~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~  263 (353)
T d1jl5a_         184 LESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP  263 (353)
T ss_dssp             CCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                        011234456777777766533210                                            


Q ss_pred             ------------cCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccc
Q 041953          214 ------------IPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL  269 (279)
Q Consensus       214 ------------~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  269 (279)
                                  ++.....+++|++|++++|+++ .+|.   .+++|+.|++++|.|+.+ |+...++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~~l-~~~~~~L  326 (353)
T d1jl5a_         264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLAEV-PELPQNL  326 (353)
T ss_dssp             TTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSCC-CCCCTTC
T ss_pred             chhcccccccCccccccccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCCcc-ccccCCC
Confidence                        0000122467999999999887 5554   357888999999988865 4443333

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.8e-12  Score=93.38  Aligned_cols=102  Identities=22%  Similarity=0.181  Sum_probs=60.3

Q ss_pred             EEcCCCCccccCcccccCCCCCCEEEccCC-cccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccc
Q 041953           58 LNISRLNLTGTIPSQLGNLSSLQSLNLSCN-RLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNT  136 (279)
Q Consensus        58 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~-~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  136 (279)
                      ++.+++++. ..|..+..+++|++|++.++ .+....+..|.++++|+.|++++|+++...+..|..+++|++|++++|+
T Consensus        13 l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          13 LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             EECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC
Confidence            444555554 34555666667777777554 3554444556666666666666666665555556666666666666666


Q ss_pred             cccccChhhhcCCCCCcEEEeecccc
Q 041953          137 LSGEIPANICSNLPFLEYLALSQNMF  162 (279)
Q Consensus       137 ~~~~~~~~~~~~~~~L~~L~l~~n~l  162 (279)
                      +. .++...|... .|+.|++++|.+
T Consensus        92 l~-~l~~~~~~~~-~l~~L~L~~Np~  115 (156)
T d2ifga3          92 LE-SLSWKTVQGL-SLQELVLSGNPL  115 (156)
T ss_dssp             CS-CCCSTTTCSC-CCCEEECCSSCC
T ss_pred             Cc-ccChhhhccc-cccccccCCCcc
Confidence            65 5555554332 456666665544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.7e-13  Score=116.94  Aligned_cols=85  Identities=26%  Similarity=0.287  Sum_probs=61.7

Q ss_pred             CeEEEEEcCCCCccc----cCcccccCCCCCCEEEccCCcccCCC----Ccccc-CCCCCcEEEcccCccccc----CCc
Q 041953           53 HRVTVLNISRLNLTG----TIPSQLGNLSSLQSLNLSCNRLSGSI----PSAIF-TTYTLKYVSFRKNQLSGA----FPS  119 (279)
Q Consensus        53 ~~l~~L~l~~~~l~~----~~~~~~~~l~~L~~L~l~~~~i~~~~----~~~~~-~~~~L~~L~l~~n~~~~~----~~~  119 (279)
                      +++++|+|++|+++.    .++..+..+++|++|++++|.+++..    ...+. ...+|++|++++|.++..    ++.
T Consensus        27 ~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~  106 (460)
T d1z7xw1          27 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS  106 (460)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccc
Confidence            467788999998763    33456678889999999999886321    22222 235799999999988633    345


Q ss_pred             cCCCCCCCcEEEeecccc
Q 041953          120 FAFNTSSLQYLDFGFNTL  137 (279)
Q Consensus       120 ~~~~l~~L~~L~l~~n~~  137 (279)
                      .+..+++|++|++++|.+
T Consensus       107 ~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1         107 TLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             HTTSCTTCCEEECCSSBC
T ss_pred             hhhccccccccccccccc
Confidence            677889999999998865

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.1e-11  Score=105.47  Aligned_cols=215  Identities=19%  Similarity=0.163  Sum_probs=130.5

Q ss_pred             EEEEEcCCCCcccc----CcccccCCCCCCEEEccCCcccCC-----CCccccCCCCCcEEEcccCccccc----CCccC
Q 041953           55 VTVLNISRLNLTGT----IPSQLGNLSSLQSLNLSCNRLSGS-----IPSAIFTTYTLKYVSFRKNQLSGA----FPSFA  121 (279)
Q Consensus        55 l~~L~l~~~~l~~~----~~~~~~~l~~L~~L~l~~~~i~~~-----~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~  121 (279)
                      ...+++..+.+...    ....+.....++.+.+..+.+...     ..........++.+++++|.+...    ....+
T Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l  279 (460)
T d1z7xw1         200 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL  279 (460)
T ss_dssp             CCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhcccccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccc
Confidence            34555555544311    112334456777888877765421     222334456788888888876522    12234


Q ss_pred             CCCCCCcEEEeeccccccccC----hhhhcCCCCCcEEEeecccccccCCc----cCCCCccCcEEeccCCccccc----
Q 041953          122 FNTSSLQYLDFGFNTLSGEIP----ANICSNLPFLEYLALSQNMFHGGIPS----ALSNCAYLQRLGLSSNDFSGV----  189 (279)
Q Consensus       122 ~~l~~L~~L~l~~n~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~l~~n~~~~~----  189 (279)
                      ...+.++.+++++|.+.....    .........|+.++++++.+......    .+...++|++|++++|.+.+.    
T Consensus       280 ~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~  359 (460)
T d1z7xw1         280 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE  359 (460)
T ss_dssp             HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred             cccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccch
Confidence            456778888888887753222    12223456788888888877643222    233456788899988887642    


Q ss_pred             CCcccC-CCCCccEEEccCcccccc----cCccCCCCCCCCEEeccCCcCcccCCcc----cc-CCCCCCeEEccCCccc
Q 041953          190 VPKEIC-NLTKLKGLYLGGNRLQGE----IPRESGNLAELELMSLSENELQGAIPRE----WG-NLTGLGILQLSDNFLT  259 (279)
Q Consensus       190 ~~~~l~-~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~i~~~~~~~----~~-~~~~L~~L~l~~n~l~  259 (279)
                      +...+. ..+.|+.|++++|.+++.    ++..+...++|++|+|++|++++.....    +. ....|+.+++.+|.+.
T Consensus       360 l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             hhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            222232 356788899988888642    3344556688899999988886432222    22 3346888999988888


Q ss_pred             ccCccccccc
Q 041953          260 GITPSSIYKL  269 (279)
Q Consensus       260 ~~~~~~~~~~  269 (279)
                      ......+..+
T Consensus       440 ~~~~~~l~~l  449 (460)
T d1z7xw1         440 EEMEDRLQAL  449 (460)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7766665444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=3.8e-09  Score=76.92  Aligned_cols=64  Identities=20%  Similarity=0.062  Sum_probs=27.6

Q ss_pred             CCCCCcEEEcccCcccccC--CccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeeccccc
Q 041953           99 TTYTLKYVSFRKNQLSGAF--PSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFH  163 (279)
Q Consensus        99 ~~~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~  163 (279)
                      .+++|++|++++|+++...  +..+..+++|+.|++++|.+. .++...+....+|+.+++.+|.+.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcC
Confidence            4455555555555544211  122333445555555555544 333322223334444455444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.2e-08  Score=74.20  Aligned_cols=67  Identities=31%  Similarity=0.317  Sum_probs=31.0

Q ss_pred             hhcCCCCCcEEEeecccccccC--CccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc
Q 041953          145 ICSNLPFLEYLALSQNMFHGGI--PSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ  211 (279)
Q Consensus       145 ~~~~~~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~  211 (279)
                      ++..+++|++|++++|.++...  +..+..+++|+.|++++|.+.....-..-...+|+.+++++|++.
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            3345666666666666665321  122334555555555555554322211112223444455554443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.84  E-value=2.3e-06  Score=62.07  Aligned_cols=112  Identities=13%  Similarity=0.049  Sum_probs=63.4

Q ss_pred             cCCCCCcEEEeecc-cccc----cCCccCCCCccCcEEeccCCcccccCC----cccCCCCCccEEEccCcccccc----
Q 041953          147 SNLPFLEYLALSQN-MFHG----GIPSALSNCAYLQRLGLSSNDFSGVVP----KEICNLTKLKGLYLGGNRLQGE----  213 (279)
Q Consensus       147 ~~~~~L~~L~l~~n-~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~----~~l~~~~~L~~L~l~~n~~~~~----  213 (279)
                      .+.+.|++|+++++ .+..    .+...+...+.|++|++++|.+.+...    ..+...+.|+.|++++|.+...    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34455666666542 2321    122234455566677776666653221    2233445677777777776532    


Q ss_pred             cCccCCCCCCCCEEeccCCcCccc-------CCccccCCCCCCeEEccCCcc
Q 041953          214 IPRESGNLAELELMSLSENELQGA-------IPREWGNLTGLGILQLSDNFL  258 (279)
Q Consensus       214 ~~~~~~~~~~L~~L~l~~n~i~~~-------~~~~~~~~~~L~~L~l~~n~l  258 (279)
                      +...+...+.|++|++++|.+...       +...+...+.|+.|+++.+..
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            223456667788888887765422       233455678888888877643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.73  E-value=2.9e-06  Score=61.51  Aligned_cols=17  Identities=18%  Similarity=0.302  Sum_probs=7.6

Q ss_pred             cCCCCCCEEEccCCccc
Q 041953           74 GNLSSLQSLNLSCNRLS   90 (279)
Q Consensus        74 ~~l~~L~~L~l~~~~i~   90 (279)
                      ...+.|++|++++|.+.
T Consensus        41 ~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          41 CNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             TTCSCCCEEECTTSCCB
T ss_pred             hhCCccceeeccccccc
Confidence            33344444444444443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.20  E-value=2e-05  Score=56.83  Aligned_cols=112  Identities=17%  Similarity=0.135  Sum_probs=60.5

Q ss_pred             cCCCCCcEEEeec-ccccc----cCCccCCCCccCcEEeccCCcccccCC----cccCCCCCccEEEccCcccccc----
Q 041953          147 SNLPFLEYLALSQ-NMFHG----GIPSALSNCAYLQRLGLSSNDFSGVVP----KEICNLTKLKGLYLGGNRLQGE----  213 (279)
Q Consensus       147 ~~~~~L~~L~l~~-n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~----~~l~~~~~L~~L~l~~n~~~~~----  213 (279)
                      .+.+.|++|++++ +.++.    .+..++...+.|++|++++|.+.....    ..+...+.++.+++.+|.+...    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3445555555554 22321    122334455566666666665543211    2233445677777777766432    


Q ss_pred             cCccCCCCCCCCEEecc--CCcCcc----cCCccccCCCCCCeEEccCCcc
Q 041953          214 IPRESGNLAELELMSLS--ENELQG----AIPREWGNLTGLGILQLSDNFL  258 (279)
Q Consensus       214 ~~~~~~~~~~L~~L~l~--~n~i~~----~~~~~~~~~~~L~~L~l~~n~l  258 (279)
                      +...+...+.|+.++|+  +|.+..    .+...+...+.|+.|++..+..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            22445566777765554  455543    2334556778888888877643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.06  E-value=1.7e-05  Score=57.22  Aligned_cols=10  Identities=30%  Similarity=0.518  Sum_probs=4.5

Q ss_pred             CCCCEEEccC
Q 041953           77 SSLQSLNLSC   86 (279)
Q Consensus        77 ~~L~~L~l~~   86 (279)
                      +.|++|++++
T Consensus        17 ~~L~~L~L~~   26 (166)
T d1io0a_          17 PDLEEVNLNN   26 (166)
T ss_dssp             TTCCEEECTT
T ss_pred             CCCcEEEcCC
Confidence            4444444443