Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 119
TIGR01557 57
TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai
6e-23 PLN03162 526
PLN03162, PLN03162, golden-2 like transcription fa
3e-12 pfam00249 47
pfam00249, Myb_DNA-binding, Myb-like DNA-binding d
5e-07
>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class
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Score = 84.0 bits (208), Expect = 6e-23
Identities = 31/56 (55%), Positives = 41/56 (73%)
Query: 47 PRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKK 102
PR+ WT DLH F+QAV++LGG + ATPK +L+LM + GL+ V SHLQ YR K+
Sbjct: 2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57
This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57
>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional
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Score = 61.3 bits (148), Expect = 3e-12
Identities = 37/91 (40%), Positives = 54/91 (59%), Gaps = 6/91 (6%)
Query: 15 ISASSS---NSVVEEGDQRKASSSSGVRPYVRSKVPRLRWTPDLHRCFVQAVERLGGQER 71
+SAS S +SV + +Q S P K ++ WTP+LHR FV AVE+LG E+
Sbjct: 203 VSASDSGECSSVDRKDNQASPKSCKNAAP--GKKKAKVDWTPELHRRFVHAVEQLG-VEK 259
Query: 72 ATPKLVLQLMNIKGLSIAHVKSHLQMYRSKK 102
A P +L+LM ++ L+ ++ SHLQ YRS +
Sbjct: 260 AFPSRILELMGVQCLTRHNIASHLQKYRSHR 290
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain
Back Show alignment and domain information
Score = 42.9 bits (102), Expect = 5e-07
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 48 RLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYR 99
R WTP+ ++AV++ G + + + G + K+ Y
Sbjct: 1 RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHLP--GRTDNQCKNRWNNYL 47
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
119
TIGR01557 57
myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c
99.92 PLN03162 526
golden-2 like transcription factor; Provisional
99.91 PF00249 48
Myb_DNA-binding: Myb-like DNA-binding domain; Inte
98.74 smart00717 49
SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi
96.85 cd00167 45
SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do
96.84 smart00426 68
TEA TEA domain.
96.45 PF13921 60
Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:
94.57 PF01285 431
TEA: TEA/ATTS domain family; InterPro: IPR000818 T
93.71 PF12776 96
Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;
92.39 KOG0457 438
consensus Histone acetyltransferase complex SAGA/A
89.8 PLN03212 249
Transcription repressor MYB5; Provisional
89.3 KOG3841 455
consensus TEF-1 and related transcription factor,
89.06 PLN03212 249
Transcription repressor MYB5; Provisional
87.71 PLN03091 459
hypothetical protein; Provisional
87.37 KOG0724 335
consensus Zuotin and related molecular chaperones
85.93 PLN03091 459
hypothetical protein; Provisional
85.68 smart00501 93
BRIGHT BRIGHT, ARID (A/T-rich interaction domain)
80.53
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class
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Probab=99.92 E-value=3.2e-25 Score=144.33 Aligned_cols=56 Identities=55% Similarity=0.900 Sum_probs=54.0
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhc
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSK 101 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~ 101 (119)
|+|++||+|+|.+|++||+.||+.+.|+|+.|+++|++++||+.||+|||||||++
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 58999999999999999999998789999999999999999999999999999986
This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
>PLN03162 golden-2 like transcription factor; Provisional
Back Show alignment and domain information
Probab=99.91 E-value=7.4e-25 Score=187.82 Aligned_cols=60 Identities=47% Similarity=0.798 Sum_probs=56.6
Q ss_pred cCCCCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhccc
Q 041956 43 RSKVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKI 103 (119)
Q Consensus 43 ~~kK~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~~~ 103 (119)
..||+||+||+|||++||+||++|| .++|+||+||++|+|+|||++||||||||||+.++
T Consensus 232 g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk 291 (526)
T PLN03162 232 GKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRR 291 (526)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcc
Confidence 3679999999999999999999999 79999999999999999999999999999999644
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins
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Probab=98.74 E-value=3.1e-08 Score=60.68 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=41.7
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhh
Q 041956 48 RLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYR 99 (119)
Q Consensus 48 Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR 99 (119)
|..||++.+..|++||.++|.. .|+.|.+.|+ .+.|..||++|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 5689999999999999999932 5999999997 5899999999999985
These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Back Show alignment and domain information
Probab=96.85 E-value=0.0049 Score=35.23 Aligned_cols=45 Identities=11% Similarity=0.255 Sum_probs=38.5
Q ss_pred eecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhh
Q 041956 49 LRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMY 98 (119)
Q Consensus 49 l~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKY 98 (119)
-.||++....|+.++.++|- ..+..|...|+ +.|..+|+.+...+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~---~~w~~Ia~~~~--~rt~~~~~~~~~~~ 46 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGK---NNWEKIAKELP--GRTAEQCRERWNNL 46 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcC--CCCHHHHHHHHHHH
Confidence 46999999999999999992 35899999985 78999999887654
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains
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Probab=96.84 E-value=0.005 Score=34.82 Aligned_cols=44 Identities=14% Similarity=0.291 Sum_probs=38.0
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhh
Q 041956 50 RWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMY 98 (119)
Q Consensus 50 ~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKY 98 (119)
.||++.+..|+.++..+|- ..+..|.+.|+ +.|..+|+.|.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~--~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELP--GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcC--CCCHHHHHHHHHHh
Confidence 4999999999999999992 35899999985 58999999987764
Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
>smart00426 TEA TEA domain
Back Show alignment and domain information
Probab=96.45 E-value=0.004 Score=42.47 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=31.3
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCchhh-----------------HHhhhCCCCCCHHHHHHhhhh
Q 041956 50 RWTPDLHRCFVQAVERLGGQERATPKL-----------------VLQLMNIKGLSIAHVKSHLQM 97 (119)
Q Consensus 50 ~WT~ELH~kFv~Av~~LGg~~~A~PK~-----------------IlelM~v~gLT~~~VkSHLQK 97 (119)
+|.+++-..|++|+..+- .....+-+ |...-| .-.|+.||.||+|.
T Consensus 5 vWp~~lE~Af~~aL~~~~-~~g~~kik~~~r~k~~gRNelIs~YI~~~tG-k~Rt~KQVsShIQv 67 (68)
T smart00426 5 VWSPDIEQAFQEALAIYP-PCGRRKIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQV 67 (68)
T ss_pred cCcHHHHHHHHHHHHHcC-ccCcccchhhhcCcccchhHHHHHHHHHHhC-Cccchhhhcchhee
Confidence 699999999999999875 22111111 222222 35899999999995
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A
Back Show alignment and domain information
Probab=94.57 E-value=0.13 Score=31.95 Aligned_cols=41 Identities=12% Similarity=0.291 Sum_probs=35.0
Q ss_pred cCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhh
Q 041956 51 WTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQM 97 (119)
Q Consensus 51 WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQK 97 (119)
||++.-...+.++..+|. .|+.|.+.|+ ..|..+|+.+...
T Consensus 1 WT~eEd~~L~~~~~~~g~----~W~~Ia~~l~--~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN----DWKKIAEHLG--NRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-----HHHHHHHST--TS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCc----CHHHHHHHHC--cCCHHHHHHHHHH
Confidence 999999999999999983 5999999985 6899999998888
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids
Back Show alignment and domain information
Probab=93.71 E-value=0.058 Score=47.18 Aligned_cols=54 Identities=22% Similarity=0.343 Sum_probs=30.0
Q ss_pred CCCceecCHHHHHHHHHHHHHhCCCCCCchh----------hHHhhhCC---CCCCHHHHHHhhhhh
Q 041956 45 KVPRLRWTPDLHRCFVQAVERLGGQERATPK----------LVLQLMNI---KGLSIAHVKSHLQMY 98 (119)
Q Consensus 45 kK~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK----------~IlelM~v---~gLT~~~VkSHLQKY 98 (119)
....-+|++++...|++|+..+---..+.-+ -|.+.+.. ...|+.||.||+|..
T Consensus 46 ~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 46 GDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 3578899999999999999877411111111 02222211 358999999999998
The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains
Back Show alignment and domain information
Probab=92.39 E-value=0.21 Score=33.28 Aligned_cols=51 Identities=14% Similarity=0.330 Sum_probs=36.3
Q ss_pred ecCHHHHHHHHHHHHHh---CCC------CCCchhhHHhhhCC---CCCCHHHHHHhhhhhhh
Q 041956 50 RWTPDLHRCFVQAVERL---GGQ------ERATPKLVLQLMNI---KGLSIAHVKSHLQMYRS 100 (119)
Q Consensus 50 ~WT~ELH~kFv~Av~~L---Gg~------~~A~PK~IlelM~v---~gLT~~~VkSHLQKYR~ 100 (119)
+||++..+-||+.+-.. |.. .+..+..|++.++- -.+|..||++|++..|.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 59999999999988543 432 12345557766664 35789999999987665
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Back Show alignment and domain information
Probab=89.80 E-value=0.62 Score=41.35 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=44.5
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhc
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSK 101 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~ 101 (119)
--...||.+.-..||+|++.+| . -.|..|.+.|| .-|.++++.|--|+...
T Consensus 70 i~~~~WtadEEilLLea~~t~G-~--GNW~dIA~hIG--tKtkeeck~hy~k~fv~ 120 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAETYG-F--GNWQDIADHIG--TKTKEECKEHYLKHFVN 120 (438)
T ss_pred CCCCCCChHHHHHHHHHHHHhC-C--CcHHHHHHHHc--ccchHHHHHHHHHHHhc
Confidence 4567899999999999999999 2 26999999999 47999999999998873
>PLN03212 Transcription repressor MYB5; Provisional
Back Show alignment and domain information
Probab=89.30 E-value=0.82 Score=37.90 Aligned_cols=50 Identities=12% Similarity=0.081 Sum_probs=41.4
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhh
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYR 99 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR 99 (119)
..|..||+|.-++-+++|+.+|. ..|+.|.+.|+ ++.|..|++-+-..|=
T Consensus 23 lKRg~WT~EEDe~L~~lV~kyG~---~nW~~IAk~~g-~gRT~KQCReRW~N~L 72 (249)
T PLN03212 23 MKRGPWTVEEDEILVSFIKKEGE---GRWRSLPKRAG-LLRCGKSCRLRWMNYL 72 (249)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCc---ccHHHHHHhhh-cCCCcchHHHHHHHhh
Confidence 45778999999999999999993 46999999886 5788888887766664
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Back Show alignment and domain information
Probab=89.06 E-value=0.34 Score=42.83 Aligned_cols=59 Identities=20% Similarity=0.412 Sum_probs=39.3
Q ss_pred CCceecCHHHHHHHHHHHHHhC---CCC----CC-----chhhHHhhhCC---CCCCHHHHHHhhhhhhhcccc
Q 041956 46 VPRLRWTPDLHRCFVQAVERLG---GQE----RA-----TPKLVLQLMNI---KGLSIAHVKSHLQMYRSKKID 104 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LG---g~~----~A-----~PK~IlelM~v---~gLT~~~VkSHLQKYR~~~~~ 104 (119)
-.--+|+++.-+.|.+|+..+- +.+ .+ .-.-|...+.. ...|+.||.||.|..-.++.+
T Consensus 74 daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk~r 147 (455)
T KOG3841|consen 74 DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLR 147 (455)
T ss_pred ccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 4667999999999999998763 210 00 01123333333 568999999999987654433
>PLN03212 Transcription repressor MYB5; Provisional
Back Show alignment and domain information
Probab=87.71 E-value=1.7 Score=36.03 Aligned_cols=49 Identities=22% Similarity=0.183 Sum_probs=39.0
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHH----hhhhhhh
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKS----HLQMYRS 100 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkS----HLQKYR~ 100 (119)
-.+-.||.|.-..-++++..+|. .|..|...| +|.|-.+||. ||.|..+
T Consensus 76 I~kgpWT~EED~lLlel~~~~Gn----KWs~IAk~L--pGRTDnqIKNRWns~LrK~l~ 128 (249)
T PLN03212 76 VKRGGITSDEEDLILRLHRLLGN----RWSLIAGRI--PGRTDNEIKNYWNTHLRKKLL 128 (249)
T ss_pred cccCCCChHHHHHHHHHHHhccc----cHHHHHhhc--CCCCHHHHHHHHHHHHhHHHH
Confidence 34568999999999999999993 599999986 8999999984 4555433
>PLN03091 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=87.37 E-value=2.2 Score=38.21 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=39.6
Q ss_pred CceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHH----hhhhhhh
Q 041956 47 PRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKS----HLQMYRS 100 (119)
Q Consensus 47 ~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkS----HLQKYR~ 100 (119)
.+-.||+|.-...++.+..+|. .|..|...| +|.|-.+||. +|.|+..
T Consensus 66 kKgpWT~EED~lLLeL~k~~Gn----KWskIAk~L--PGRTDnqIKNRWnslLKKklr 117 (459)
T PLN03091 66 KRGTFSQQEENLIIELHAVLGN----RWSQIAAQL--PGRTDNEIKNLWNSCLKKKLR 117 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCc----chHHHHHhc--CCCCHHHHHHHHHHHHHHHHH
Confidence 3457999999999999999993 699999986 8999999984 4556533
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Back Show alignment and domain information
Probab=85.93 E-value=0.31 Score=39.85 Aligned_cols=60 Identities=13% Similarity=0.045 Sum_probs=47.1
Q ss_pred ccccCCCCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhccccC
Q 041956 40 PYVRSKVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKIDD 105 (119)
Q Consensus 40 ~~~~~kK~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~~~~~ 105 (119)
+|...+...-+||++.|.+|.+|+-.. +..|..|.++.+. .+..++.+|.|+|..+....
T Consensus 45 a~~i~~~~~~~~t~~~~~~~~~~l~~~----~~~~~~~~~~~~~--~~~v~~~~~~~~~~p~~~~~ 104 (335)
T KOG0724|consen 45 ALAILDDDEPRRTPDSWDKFAEALPLE----KRLEDKIEEYIGL--VFDVNIRESGQKPFPKYGKS 104 (335)
T ss_pred HHHHHhccccccchhhhhHHHhcCccc----cccchhHHhhhhh--HHHHhhhhccCCCccccCcc
Confidence 566665556679999999999988554 3568899888765 78899999999999875554
>PLN03091 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=85.68 E-value=1.6 Score=38.96 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=40.6
Q ss_pred CCCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhh
Q 041956 45 KVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYR 99 (119)
Q Consensus 45 kK~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR 99 (119)
+..|..||+|.-++.+++|..+|. ..|+.|...|+ ++.|-.|++-+-..|-
T Consensus 11 klrKg~WTpEEDe~L~~~V~kyG~---~nWs~IAk~~g-~gRT~KQCRERW~NyL 61 (459)
T PLN03091 11 KLRKGLWSPEEDEKLLRHITKYGH---GCWSSVPKQAG-LQRCGKSCRLRWINYL 61 (459)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhCc---CCHHHHhhhhc-cCcCcchHhHHHHhcc
Confidence 456678999999999999999993 47999999886 4678778776655443
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain
Back Show alignment and domain information
Probab=80.53 E-value=2.3 Score=28.86 Aligned_cols=44 Identities=23% Similarity=0.390 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCCCCC----CchhhHHhhhCCCCC---CHHHHHHhhhhh
Q 041956 54 DLHRCFVQAVERLGGQER----ATPKLVLQLMNIKGL---SIAHVKSHLQMY 98 (119)
Q Consensus 54 ELH~kFv~Av~~LGg~~~----A~PK~IlelM~v~gL---T~~~VkSHLQKY 98 (119)
+|+.-|. +|..+||.+. ..|+.|.+.|+++.- ...++++|-+||
T Consensus 33 dL~~Ly~-~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~ 83 (93)
T smart00501 33 DLYRLYR-LVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERY 83 (93)
T ss_pred cHHHHHH-HHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHH
Confidence 7888887 5888999653 569999999999742 245566666666
DNA-binding domain containing a helix-turn-helix structure
Homologous Structure Domains
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 119
d1irza_ 64
Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId
99.95 d2cu7a1 65
MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960
98.19 d1x41a1 47
Transcriptional adaptor 2-like, TADA2L, isoform b
98.01 d2cjja1 63
Radialis {Garden snapdragon (Antirrhinum majus) [T
97.57 d2iw5b1 65
REST corepressor 1, CoREST {Human (Homo sapiens) [
97.5 d1xc5a1 68
Nuclear receptor corepressor 2 {Human (Homo sapien
97.38 d1guua_ 50
c-Myb, DNA-binding domain {Mouse (Mus musculus) [T
97.34 d2cqra1 60
DnaJ homolog subfamily C member 1 {Human (Homo sap
97.13 d2crga1 57
Metastasis associated protein MTA3 {Mouse (Mus mus
96.91 d2cqqa1 59
DnaJ homolog subfamily C member 1 {Human (Homo sap
96.76 d1w0ua_ 55
Telomeric repeat binding factor 2, TRF2 {Human (Ho
96.66 d1gvda_ 52
c-Myb, DNA-binding domain {Mouse (Mus musculus) [T
96.5 d1gv2a2 47
c-Myb, DNA-binding domain {Mouse (Mus musculus) [T
96.43 d1w0ta_ 52
DNA-binding domain of human telomeric protein, hTR
96.26 d1igna1 86
DNA-binding domain of rap1 {Baker's yeast (Sacchar
94.61 d2ckxa1 83
Telomere binding protein TBP1 {Tobacco (Nicotiana
93.03 d1ug2a_ 95
2610100b20rik gene product {Mouse (Mus musculus) [
86.08
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Back Hide information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.95 E-value=1.9e-29 Score=165.68 Aligned_cols=60 Identities=47% Similarity=0.733 Sum_probs=56.2
Q ss_pred CCCCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhcccc
Q 041956 44 SKVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKID 104 (119)
Q Consensus 44 ~kK~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~~~~ 104 (119)
.||+|++||+|||++||+||++||+ +.|+||.|+++|++++||+.||+|||||||++..+
T Consensus 3 ~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k 62 (64)
T d1irza_ 3 QKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999985 88999999999999999999999999999997543
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=1.8e-06 Score=53.39 Aligned_cols=50 Identities=22% Similarity=0.397 Sum_probs=43.9
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhccc
Q 041956 48 RLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKI 103 (119)
Q Consensus 48 Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~~~ 103 (119)
.++||+|.+..|++||..+|. .|..|.++| ++.|..+|++|.++|.....
T Consensus 2 ~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~ry~~~~~~~~ 51 (65)
T d2cu7a1 2 SVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKNKV 51 (65)
T ss_dssp CCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHhcc----hHHHHHHHc--CCCCHHHHHHHHHHHHHHHH
Confidence 367999999999999999993 599999997 47999999999999976543
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=6.4e-06 Score=48.84 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=40.3
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhh
Q 041956 50 RWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYR 99 (119)
Q Consensus 50 ~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR 99 (119)
.||++.+.+|++||..+|- ..|..|.+.|+ +.|..|++.|-++|+
T Consensus 3 ~Wt~eEd~~L~~~v~~~G~---~nW~~Ia~~~~--~Rt~~Qcr~r~~~~f 47 (47)
T d1x41a1 3 SWTAQEEMALLEAVMDCGF---GNWQDVANQMC--TKTKEECEKHYMKYF 47 (47)
T ss_dssp SSCHHHHHHHHHHHHHTCT---TCHHHHHHHHT--TSCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHCC---ccHHHHHHHcC--CCCHHHHHHHHHHhC
Confidence 4999999999999999992 25999999986 789999999999985
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]
Probab=97.57 E-value=6.6e-05 Score=46.33 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=40.2
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhh
Q 041956 50 RWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMY 98 (119)
Q Consensus 50 ~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKY 98 (119)
.||+|.+..|++||..+|......|..|.+.| ++.|..||+.|-++.
T Consensus 3 ~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l--~gRt~~qc~~r~~~L 49 (63)
T d2cjja1 3 PWSAKENKAFERALAVYDKDTPDRWANVARAV--EGRTPEEVKKHYEIL 49 (63)
T ss_dssp SCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS--TTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCchHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 49999999999999999954445799999997 589999999997543
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.00014 Score=44.80 Aligned_cols=49 Identities=24% Similarity=0.380 Sum_probs=42.8
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhh
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 100 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~ 100 (119)
+..-.||++....|++|+..+|. .+..|.++| ++.|..+|+.|..+|+.
T Consensus 3 k~~~~WT~eE~~~f~~~~~~~G~----~w~~Ia~~~--~~kt~~q~~~~y~~~~k 51 (65)
T d2iw5b1 3 KCNARWTTEEQLLAVQAIRKYGR----DFQAISDVI--GNKSVVQVKNFFVNYRR 51 (65)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHHH--SSCCHHHHHHHHHHTTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCc----hHHHHHHHc--CCCCHHHHHHHHHHHHh
Confidence 45567999999999999999993 499999997 57999999999988864
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=0.00011 Score=45.66 Aligned_cols=47 Identities=9% Similarity=0.110 Sum_probs=39.8
Q ss_pred CCCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhh
Q 041956 45 KVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQM 97 (119)
Q Consensus 45 kK~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQK 97 (119)
++..-.||+|.+..|++||.++|. .+..|.++| ++.|..||+.|-..
T Consensus 14 ~~~~~~WT~eE~~~f~~~~~~~G~----~w~~Ia~~~--~~rt~~q~~~~yy~ 60 (68)
T d1xc5a1 14 RQVMNMWSEQEKETFREKFMQHPK----NFGLIASFL--ERKTVAECVLYYYL 60 (68)
T ss_dssp TTTTTCCCTTTHHHHHHHHHHTTS----CSSSHHHHT--TTSCHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHCC----cHHHHHHHc--CCCCHHHHHHHHHH
Confidence 345567999999999999999993 489999986 68999999999643
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.34 E-value=0.00025 Score=41.94 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=40.3
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhh
Q 041956 48 RLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMY 98 (119)
Q Consensus 48 Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKY 98 (119)
|..||++....++++|+.+|. ..|..|.+.| ++.|..|++.|-++|
T Consensus 1 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 46 (50)
T d1guua_ 1 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 46 (50)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHH--CCCCHHHHHHHHHhh
Confidence 457999999999999999993 2599999997 589999999998876
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.13 E-value=0.00041 Score=42.12 Aligned_cols=50 Identities=8% Similarity=0.108 Sum_probs=40.4
Q ss_pred CCCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhh
Q 041956 45 KVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQ 96 (119)
Q Consensus 45 kK~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQ 96 (119)
+..+-.||+|....|++||..+|....-.|..|.+.| ||.|..||..|-+
T Consensus 9 ~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l--~~Rt~~qc~~R~~ 58 (60)
T d2cqra1 9 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV--PSKSKEDCIARYK 58 (60)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC--SSSCHHHHHHHHH
T ss_pred CcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHc--CCCCHHHHHHHHH
Confidence 3455679999999999999999943223589999886 5899999988764
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.91 E-value=0.0009 Score=40.65 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=36.5
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhh
Q 041956 50 RWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMY 98 (119)
Q Consensus 50 ~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKY 98 (119)
.||+|.+..|++|+..+|- ....|.+.| +|+.|..+|.+|--.+
T Consensus 3 ~WT~eE~~~F~~~~~~yGK----df~~I~~~~-v~~Ks~~~~v~fYY~~ 46 (57)
T d2crga1 3 EWSASEACLFEEALEKYGK----DFNDIRQDF-LPWKSLTSIIEYYYMW 46 (57)
T ss_dssp CCCHHHHHHHHHHHHHTCS----CHHHHHHTT-CSSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcc----cHHHHHHHH-cCCCCHHHHHHHHHHH
Confidence 5999999999999999993 478898754 3679999999987443
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.76 E-value=0.0019 Score=40.07 Aligned_cols=55 Identities=11% Similarity=0.205 Sum_probs=46.6
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhccccCCC
Q 041956 50 RWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKIDDHG 107 (119)
Q Consensus 50 ~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~~~~~~g 107 (119)
.||.+....|..|+..+.....-.|.+|.+.|| .|.++|..+.++.+.......|
T Consensus 3 eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg---kt~~ev~~~~k~l~e~~~~~~g 57 (59)
T d2cqqa1 3 EWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG---RSVTDVTTKAKQLKDSVTCSPG 57 (59)
T ss_dssp CCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT---SCHHHHHHHHHHHHHSCCCCSC
T ss_pred CCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC---CCHHHHHHHHHHHHHhcccCCC
Confidence 699999999999999997544567899999994 7999999999999887665555
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.66 E-value=0.0029 Score=37.81 Aligned_cols=48 Identities=10% Similarity=0.191 Sum_probs=40.2
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhh
Q 041956 48 RLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMY 98 (119)
Q Consensus 48 Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKY 98 (119)
|-.||++.-..++++|..+|- ..|..|++.+.+++.|..|++-+-..|
T Consensus 2 r~~WT~eEd~~L~~~V~~~G~---~~W~~I~~~~~~~~Rt~~q~k~Rwrn~ 49 (55)
T d1w0ua_ 2 KQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKDRWRTM 49 (55)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---ChHHHHHhhcCCCCcCHHHHHHHHHHH
Confidence 457999999999999999992 259999999877899999998665443
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.50 E-value=0.003 Score=37.49 Aligned_cols=46 Identities=13% Similarity=0.245 Sum_probs=40.2
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhh
Q 041956 48 RLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMY 98 (119)
Q Consensus 48 Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKY 98 (119)
|..||++.-.+-+++|.++|- ..|+.|.+.| ++.|..|++.+-++|
T Consensus 3 rg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qc~~Rw~~~ 48 (52)
T d1gvda_ 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHH--CCCCHHHHHHHHHhh
Confidence 556999999999999999992 2599999987 589999999988876
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.43 E-value=0.0034 Score=36.64 Aligned_cols=43 Identities=28% Similarity=0.404 Sum_probs=37.9
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhh
Q 041956 50 RWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMY 98 (119)
Q Consensus 50 ~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKY 98 (119)
-||+|.-+.++++|..+|. .|..|..+| ||.|..+|+.|-..+
T Consensus 3 ~WT~eED~~L~~~v~~~G~----~W~~Ia~~~--~gRt~~~~knr~~~~ 45 (47)
T d1gv2a2 3 SWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAIKNHWNST 45 (47)
T ss_dssp CCCHHHHHHHHHHHHHHSS----CHHHHHTTC--TTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhh----HHHHHHhHc--CCCCHHHHHHHHHHH
Confidence 5999999999999999993 599999886 799999999886554
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.26 E-value=0.0076 Score=35.57 Aligned_cols=48 Identities=13% Similarity=0.192 Sum_probs=39.7
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhh
Q 041956 48 RLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMY 98 (119)
Q Consensus 48 Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKY 98 (119)
|-.||+|.-+..+++|+.+|- -.|..|.+.....+.|..|++..-..|
T Consensus 2 r~~WT~eED~~L~~~v~~~G~---~~W~~I~~~~~~~~Rt~~q~r~Rw~nl 49 (52)
T d1w0ta_ 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCC---CCHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 457999999999999999992 159999988777789999998765544
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.61 E-value=0.018 Score=37.33 Aligned_cols=52 Identities=10% Similarity=0.179 Sum_probs=42.6
Q ss_pred ceecCHHHHHHHHHHHHHhCCC--CCCchhhHHhhhCCCCCCHHHHHHhhhhhhhc
Q 041956 48 RLRWTPDLHRCFVQAVERLGGQ--ERATPKLVLQLMNIKGLSIAHVKSHLQMYRSK 101 (119)
Q Consensus 48 Rl~WT~ELH~kFv~Av~~LGg~--~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~ 101 (119)
|..||+|.-...+++|..+|-. ....|..|.+.| ||.|-.|++.+-..|=..
T Consensus 1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~l--pgRt~~qcr~Rw~~~L~p 54 (86)
T d1igna1 1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYV--PNHTGNSIRHRFRVYLSK 54 (86)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTS--TTSCHHHHHHHHHHTTGG
T ss_pred CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHc--CCCCHHHHHHHHHHHcCc
Confidence 4579999999999999999821 224599998887 799999999988887653
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=93.03 E-value=0.13 Score=32.41 Aligned_cols=45 Identities=18% Similarity=0.115 Sum_probs=37.6
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhC--CCCCCHHHHHHhhhh
Q 041956 50 RWTPDLHRCFVQAVERLGGQERATPKLVLQLMN--IKGLSIAHVKSHLQM 97 (119)
Q Consensus 50 ~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~--v~gLT~~~VkSHLQK 97 (119)
.||+|.-+..+++|+.+|.. .|..|...|. +++.|..|++..-..
T Consensus 2 ~WT~eEd~~L~~~V~~~G~~---~W~~I~~~~~~~~~~Rt~~qck~RWrn 48 (83)
T d2ckxa1 2 PFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKT 48 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSS---CHHHHHHHHCTTCTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcc---cHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence 49999999999999999932 5999999885 478999999855433
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.08 E-value=0.91 Score=29.98 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=39.2
Q ss_pred CceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhh
Q 041956 47 PRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQ 96 (119)
Q Consensus 47 ~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQ 96 (119)
.-..||.|.-+-.|+.+...| ...-+|..|.+.| ++.|-.||+-..|
T Consensus 32 ~~~~WTrEEDriIL~~~q~~G-~~~~tw~~Ia~~L--~~Rs~~qvr~Rf~ 78 (95)
T d1ug2a_ 32 KVVLWTREADRVILTMCQEQG-AQPHTFSVISQQL--GNKTPVEVSHRFR 78 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTT-SCTTTHHHHHHHH--SSCCHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHHcC-CcHHHHHHHHHHc--CCCCHHHHHHHHH
Confidence 456799999999999999999 5556799998887 5789999996544
