Citrus Sinensis ID: 041976

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-
Protein Sequence
MGLLIRSYQFFSLQLLLLHSLSYAKHCPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKDTNCCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKCGNDEAPTTFHEEDEEAESSSSWFDW
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEccccccEEEEEcccccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccEEEcccccccccccccccccccccEEEccccccEEEEccHHccccccccEEEccccEEccccccccccccccccEEEccccccccccHHccccccccEEEcccccccccccHHHHHcccccccEEEccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHHcccccEEEcccccccccccHHHcccccccEEEccccccEEEccccccccccccccEEEcccccccccccHHHHHcHHHccccccccccccccccccEEEEEEEEEcccHHHHHHcccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccccccHHccccccccccccccEEEEcccccEEEEEEccccccccccccccHHHccHHHcEEEccccccccccccHHHccccccEEEEcccccccccccHHHHcccccEEEEccccccccccEEEEcccccccccccHHHHccccccEEEccccccccccccHHccccccEEEEccccccccccHHHccccccEEEEEEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccccccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccEEEcccccccccccHHHHccccccEEEEccccccccccHHHHHccccccEEEEcccccEccccccccccccHHHEEEccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEEcccccccccccccccccEEEEccccccccccccccccEEEEEEccccccccccHHHccccccEEEEcccccccccccHHHHcccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEcccHHHHccccEEEEcccccccccccHHHHcccccEEEEEEccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHHHHcccccccccccccEEHHHEEEEcccccHHHHHHccEEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccccccHHHccHHHcccccEEEcccccccccccccccccccccccccccccEEcc
Coil and Loop (DISEMBL)
MGLLIRSYQFFSLQLLLLHSLsyakhcpreqsSALIQFKQlfsfdedssfvcqrsypkmiswkkdtnccswdgvtcdmatgnVISLDLScswlhgniptntsLFHLLHLQtlnlshndfdyseissgfsrfrnlthfslsdsninckipyEISFLKMSTVVLDSLKNLSSSLtslslsdcilqgnfpinifhlpnpqmirlsqnpslagkfpannwtspieyldvsetsfselpdsigNLKLLGRLMLGysqfvgpvpaslgnltQLTLLHLMHnnfsghipsslsnlvqltyldlssnsffgeipdifnltqvsffdlsnnqlagpipshgsrLQNLVLIRlnnnsfsgtipswlfslplleyvrlsdnqlsghidefpskslqniylsnnrlqgsipssIFELVNltdlqldsnnfsgiaEPYMFAKLIKLKYLYLSHnslslgntfkidspfpkfsylslsacnisafprflrtqdelsyldlsenkidgqipswISEIGKDSLSYVNLSHNFITKmkqipwknlgyldlrsnllqgplpvppsslRVLLISNNQFTGEIIHSICDIIALdvldlsnnrlngtipecignfspslsvldlrnnrlngsipgtfaesnWLRSLNLnnnelggaipqslvnctkvevldignikindafpywlgnlpeLQVLVLRSnkfhgsvrefepkesfpklrilDLSINNFSGYLPERFLENLNAMRNvsadegklrylgeeyyqdSVVVTLKGTEIEMQKILTVFTtidfssngfdgeISQVIGKLHSLRLlnlshnhftgqipsslgnlaklesldlssnnvagkipkpltsltslsvlnlshnrldgpiphgpqfntfqedsyignlglcgfpltkkcgndeapttfheedeeaesssswfdw
Flexible Loop (DISEMBL)
MGLLIRSYQFFSLQLLLLHSLSYAKHCPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKDTNCCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVrefepkesfpklriLDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKCGNDEAPTTfheedeeaesssswfdw
Low Complexity Region (SEG)
MGLLIRsyqffslqllllhslsyAKHCPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKDTNCCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNtslfhllhlqtlnlshnDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVldslknlsssltslslsDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASlgnltqltllhlmhnnFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGplpvppsslrvllISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAesnwlrslnlnnnelGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKlhslrllnlshnhFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPltsltslsvlnlsHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKCGNDEAPTTFHeedeeaessssWFDW
Disordered region (IsUnstruct)
**LLIRSYQFFSLQLLLLHSLSYAKHCPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKDTNCCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKL******************TSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKC*************************
Disordered Region (DISOPRED)
*G*LIRSYQFFSLQLLLLHSLSYAKHCPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKDTNCCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRN*******LRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFP************************SSWFDW
Disordered Region (DISEMBL)
MGLLIRSYQFFSLQLLLLHSLSYAKHCPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKDTNCCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKCGNDEA********************
Disordered Region (DISPRO)
*GLLIRSYQFFSLQLLLLHSLSYAKHCPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKDTNCCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKC*************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLLIRSYQFFSLQLLLLHSLSYAKHCPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKDTNCCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKCGNDEAPTTFHEEDEEAESSSSWFDW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	901	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.861	0.916	0.348	1e-120
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.836	0.603	0.332	1e-83
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.830	0.597	0.322	2e-75
Q9FL28	1173	LRR receptor-like serine/	no	no	0.780	0.599	0.302	2e-69
Q9LP24	1120	Probable leucine-rich rep	no	no	0.762	0.613	0.291	2e-61
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.634	0.479	0.327	9e-61
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.596	0.472	0.336	4e-57
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.641	0.531	0.328	1e-56
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.644	0.527	0.331	2e-56
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.673	0.550	0.306	3e-56

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  434 bits (1115), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 321/922 (34%), Positives = 478/922 (51%), Gaps = 146/922 (15%)

Query: 3   LLIRSYQ--FFSLQL-----LLLHSL--SYAKHCPREQSSALIQFKQLFSFDEDSSFVCQ 53
           ++IRS++   FS ++     LL+HSL  S    C  +Q  AL++F+  F  +     + Q
Sbjct: 1   MMIRSHRHWVFSSRIIIFLSLLVHSLASSSPHFCRDDQRDALLEFRGEFPINASWHIMNQ 60

Query: 54  RSYPKMISWKKDTNCCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLN 113
              P    W K T+CC W+GVTC+  +G VISLD+  ++L+  + TN+SLF L +L+ L+
Sbjct: 61  WRGP----WNKSTDCCLWNGVTCNDKSGQVISLDIPNTFLNNYLKTNSSLFKLQYLRHLD 116

Query: 114 LSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLT 173
           L++ +  Y EI S      NL+H +L +          + F K    +  S+ NL+  L 
Sbjct: 117 LTNCNL-YGEIPSSLG---NLSHLTLVN----------LYFNKFVGEIPASIGNLNQ-LR 161

Query: 174 SLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSEL 233
            L L++ +L G  P ++ +L     + L  N  L GK                      +
Sbjct: 162 HLILANNVLTGEIPSSLGNLSRLVNLELFSN-RLVGK----------------------I 198

Query: 234 PDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTY 293
           PDSIG+LK L  L L  +  +G +P+SLGNL+ L  L L HN   G +P+S+ NL++L  
Sbjct: 199 PDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRV 258

Query: 294 LDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTI 352
           +   +NS  G IP  F NLT++S F LS+N      P   S   NL    ++ NSFSG  
Sbjct: 259 MSFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPF 318

Query: 353 PSWLFSLPLLEYVRLSDNQLSGHIDEFPSKS----LQNIYLSNNRLQGSIPSSIFELVNL 408
           P  L  +P LE + L +NQ +G I EF + S    LQ++ L  NRL G IP SI  L+NL
Sbjct: 319 PKSLLLIPSLESIYLQENQFTGPI-EFANTSSSTKLQDLILGRNRLHGPIPESISRLLNL 377

Query: 409 TDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNI 468
            +L +  NNF+G A P   +KL+ L +                                 
Sbjct: 378 EELDISHNNFTG-AIPPTISKLVNLLH--------------------------------- 403

Query: 469 SAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKN- 527
                          LDLS+N ++G++P+ +       L+ + LSHN  +  +    +  
Sbjct: 404 ---------------LDLSKNNLEGEVPACLWR-----LNTMVLSHNSFSSFENTSQEEA 443

Query: 528 -LGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGT 586
            +  LDL SN  QGP+P                     + IC + +L  LDLSNN  +G+
Sbjct: 444 LIEELDLNSNSFQGPIP---------------------YMICKLSSLGFLDLSNNLFSGS 482

Query: 587 IPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKV 646
           IP CI NFS S+  L+L +N  +G++P  F+++  L SL++++N+L G  P+SL+NC  +
Sbjct: 483 IPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKAL 542

Query: 647 EVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNF 706
           E++++ + KI D FP WL +LP L VL LRSNKF+G +        F  LRI+D+S NNF
Sbjct: 543 ELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNF 602

Query: 707 SGYLPERFLENLNAMRNVSADEGKL-----RYLGEEYYQDSVVVTLKGTEIEMQKILTVF 761
           SG LP  +  N   M  ++ +  +      RY  + YY +  +V  KG ++  ++I   F
Sbjct: 603 SGTLPPYYFSNWKDMTTLTEEMDQYMTEFWRY-ADSYYHEMEMVN-KGVDMSFERIRRDF 660

Query: 762 TTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAG 821
             IDFS N  +G I + +G L  LR+LNLS N FT  IP  L NL KLE+LD+S N ++G
Sbjct: 661 RAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSG 720

Query: 822 KIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKCGNDEA 881
           +IP+ L +L+ LS +N SHN L GP+P G QF   +  S++ N GL G  L   C +  A
Sbjct: 721 QIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYG--LEDICRDTGA 778

Query: 882 --PTTFHEEDEEAESSSSWFDW 901
             PT+   ED  +E+  + F+W
Sbjct: 779 LNPTSQLPED-LSEAEENMFNW 799

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  311 bits (798), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 288/867 (33%), Positives = 411/867 (47%), Gaps = 113/867 (13%)

Query: 62  WKKDT-NCCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFD 120
           W  D  N CSW GVTCD                      NT LF ++ L    L      
Sbjct: 50  WNSDNINYCSWTGVTCD----------------------NTGLFRVIALNLTGLGLT--- 84

Query: 121 YSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLT------- 173
              IS  F RF NL H  LS +N+   IP  +S L      L+SL   S+ LT       
Sbjct: 85  -GSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNL----TSLESLFLFSNQLTGEIPSQL 139

Query: 174 -------SLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPAN-NWTSPIEYLDV 225
                  SL + D  L G+ P  + +L N QM+ L+ +  L G  P+       ++ L +
Sbjct: 140 GSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALA-SCRLTGPIPSQLGRLVRVQSLIL 198

Query: 226 SETSF-SELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSS 284
            +      +P  +GN   L       +   G +PA LG L  L +L+L +N+ +G IPS 
Sbjct: 199 QDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQ 258

Query: 285 LSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRL 343
           L  + QL YL L +N   G IP  + +L  +   DLS N L G IP     +  L+ + L
Sbjct: 259 LGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVL 318

Query: 344 NNNSFSGTIPSWLFSLPL-LEYVRLSDNQLSGHIDEFPSK--SLQNIYLSNNRLQGSIPS 400
            NN  SG++P  + S    LE + LS  QLSG I    SK  SL+ + LSNN L GSIP 
Sbjct: 319 ANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPE 378

Query: 401 SIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSY 460
           ++FELV LTDL L +N   G   P + + L  L++L L HN+L  G   K  S   K   
Sbjct: 379 ALFELVELTDLYLHNNTLEGTLSPSI-SNLTNLQWLVLYHNNLE-GKLPKEISALRKLEV 436

Query: 461 LSLSACNISA-FPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITK 519
           L L     S   P+ +     L  +D+  N  +G+IP  I  +    L+ ++L  N +  
Sbjct: 437 LFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRL--KELNLLHLRQNELVG 494

Query: 520 MKQIPWKN---LGYLDLRSNLLQGPLPVP---PSSLRVLLISNNQFTGEIIHSICDIIAL 573
                  N   L  LDL  N L G +P        L  L++ NN   G +  S+  +  L
Sbjct: 495 GLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNL 554

Query: 574 DVLDLSNNRLNGTI-PEC----------------------IGNFSPSLSVLDLRNNRLNG 610
             ++LS+NRLNGTI P C                      +GN S +L  L L  N+L G
Sbjct: 555 TRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGN-SQNLDRLRLGKNQLTG 613

Query: 611 SIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPEL 670
            IP T  +   L  L++++N L G IP  LV C K+  +D+ N  ++   P WLG L +L
Sbjct: 614 KIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQL 673

Query: 671 QVLVLRSNKFHGSVREFEPKESF--PKLRILDLSINNFSGYLPERFLENLNAMRNVSADE 728
             L L SN+F  S+    P E F   KL +L L  N+ +G +P+  + NL A+  ++ D+
Sbjct: 674 GELKLSSNQFVESL----PTELFNCTKLLVLSLDGNSLNGSIPQE-IGNLGALNVLNLDK 728

Query: 729 GKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLR-L 787
            +                  G+  +    L+    +  S N   GEI   IG+L  L+  
Sbjct: 729 NQF----------------SGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSA 772

Query: 788 LNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPI 847
           L+LS+N+FTG IPS++G L+KLE+LDLS N + G++P  +  + SL  LN+S N L G +
Sbjct: 773 LDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL 832

Query: 848 PHGPQFNTFQEDSYIGNLGLCGFPLTK 874
               QF+ +  DS++GN GLCG PL++
Sbjct: 833 KK--QFSRWPADSFLGNTGLCGSPLSR 857

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  285 bits (728), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 275/854 (32%), Positives = 412/854 (48%), Gaps = 106/854 (12%)

Query: 69  CSWDGVTCDMA------------TG----------NVISLDLSCSWLHGNIPTNTSLFHL 106
           C+W GVTC               TG          N+I +DLS + L G IPT  +L +L
Sbjct: 61  CNWTGVTCGGREIIGLNLSGLGLTGSISPSIGRFNNLIHIDLSSNRLVGPIPT--TLSNL 118

Query: 107 LHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLK 166
                     ++    +I S      NL    L D+ +N  IP             ++  
Sbjct: 119 SSSLESLHLFSNLLSGDIPSQLGSLVNLKSLKLGDNELNGTIP-------------ETFG 165

Query: 167 NLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPA--NNWTSPIEYLD 224
           NL + L  L+L+ C L G  P     L   Q + L  N  L G  PA   N TS   +  
Sbjct: 166 NLVN-LQMLALASCRLTGLIPSRFGRLVQLQTLILQDN-ELEGPIPAEIGNCTSLALFAA 223

Query: 225 VSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSS 284
                   LP  +  LK L  L LG + F G +P+ LG+L  +  L+L+ N   G IP  
Sbjct: 224 AFNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKR 283

Query: 285 LSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQLAGPIP----SHGSRLQNLV 339
           L+ L  L  LDLSSN+  G I + F  + Q+ F  L+ N+L+G +P    S+ + L+ L 
Sbjct: 284 LTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLF 343

Query: 340 LIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDE--FPSKSLQNIYLSNNRLQGS 397
           L   +    SG IP+ + +   L+ + LS+N L+G I +  F    L N+YL+NN L+G+
Sbjct: 344 L---SETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGT 400

Query: 398 IPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS------LGNTFKI 451
           + SSI  L NL +  L  NN  G   P     L KL+ +YL  N  S      +GN  ++
Sbjct: 401 LSSSISNLTNLQEFTLYHNNLEGKV-PKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRL 459

Query: 452 DSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVN 511
                  + LS         P  +    +L+ L L EN++ G IP+ +    +  ++ ++
Sbjct: 460 QEIDWYGNRLS------GEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQ--MTVID 511

Query: 512 LSHNFITKMKQIPWKNLGYLD------LRSNLLQGPLPVPPSSLRVLL---ISNNQFTGE 562
           L+ N ++    IP  + G+L       + +N LQG LP    +L+ L     S+N+F G 
Sbjct: 512 LADNQLSG--SIP-SSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGS 568

Query: 563 IIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWL 622
           I   +C   +    D++ N   G IP  +G  S +L  L L  N+  G IP TF + + L
Sbjct: 569 I-SPLCGSSSYLSFDVTENGFEGDIPLELGK-STNLDRLRLGKNQFTGRIPRTFGKISEL 626

Query: 623 RSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHG 682
             L+++ N L G IP  L  C K+  +D+ N  ++   P WLG LP L  L L SNKF G
Sbjct: 627 SLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVG 686

Query: 683 SVREFEPKESFPKLRILDLSI--NNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQ 740
           S+    P E F    IL L +  N+ +G +P+  + NL A+  ++ +E +L         
Sbjct: 687 SL----PTEIFSLTNILTLFLDGNSLNGSIPQE-IGNLQALNALNLEENQLSG------- 734

Query: 741 DSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLR-LLNLSHNHFTGQI 799
                 L  T  ++ K+      +  S N   GEI   IG+L  L+  L+LS+N+FTG+I
Sbjct: 735 -----PLPSTIGKLSKLFE----LRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRI 785

Query: 800 PSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQED 859
           PS++  L KLESLDLS N + G++P  +  + SL  LNLS+N L+G +    QF+ +Q D
Sbjct: 786 PSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKK--QFSRWQAD 843

Query: 860 SYIGNLGLCGFPLT 873
           +++GN GLCG PL+
Sbjct: 844 AFVGNAGLCGSPLS 857

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  265 bits (676), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 249/822 (30%), Positives = 375/822 (45%), Gaps = 119/822 (14%)

Query: 69  CSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGF 128
           C+W G+TCD +TG+V+S+ L    L G +  + ++ +L +LQ L+L+ N F   +I +  
Sbjct: 61  CNWTGITCD-STGHVVSVSLLEKQLEGVL--SPAIANLTYLQVLDLTSNSF-TGKIPAEI 116

Query: 129 SRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPI 188
            +   L    L  +  +  IP  I  LK              ++  L L + +L G+ P 
Sbjct: 117 GKLTELNQLILYLNYFSGSIPSGIWELK--------------NIFYLDLRNNLLSGDVPE 162

Query: 189 NIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLML 248
            I    +  +I           F  NN T  I             P+ +G+L  L   + 
Sbjct: 163 EICKTSSLVLI----------GFDYNNLTGKI-------------PECLGDLVHLQMFVA 199

Query: 249 GYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIP-D 307
             +   G +P S+G L  LT L L  N  +G IP    NL+ L  L L+ N   G+IP +
Sbjct: 200 AGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAE 259

Query: 308 IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRL 367
           I N + +   +L +NQL G IP+    L  L  +R+  N  + +IPS LF L  L ++ L
Sbjct: 260 IGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGL 319

Query: 368 SDNQLSGHIDEFPS--KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPY 425
           S+N L G I E     +SL+ + L +N   G  P SI  L NLT L +  NN SG   P 
Sbjct: 320 SENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISG-ELPA 378

Query: 426 MFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLD 485
               L  L+ L  +H++L  G       P P     S+S C              L  LD
Sbjct: 379 DLGLLTNLRNLS-AHDNLLTG-------PIPS----SISNCT------------GLKLLD 414

Query: 486 LSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVP 545
           LS N++ G+IP      G+ +L+++++  N  T   +IP                     
Sbjct: 415 LSHNQMTGEIPRGF---GRMNLTFISIGRNHFTG--EIPDDIFNC--------------- 454

Query: 546 PSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRN 605
            S+L  L +++N  TG +   I  +  L +L +S N L G IP  IGN    L++L L +
Sbjct: 455 -SNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLK-DLNILYLHS 512

Query: 606 NRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLG 665
           N   G IP   +    L+ L + +N+L G IP+ + +   + VLD+ N K +   P    
Sbjct: 513 NGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFS 572

Query: 666 NLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMR--- 722
            L  L  L L+ NKF+GS+      +S   L   D+S N  +G +P   L +L  M+   
Sbjct: 573 KLESLTYLSLQGNKFNGSIPA--SLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYL 630

Query: 723 ---------NVSADEGKLRYLGE-----EYYQDSVVVTLKGTEIEMQKILTVFTTIDFSS 768
                     +  + GKL  + E       +  S+  +L+  +        VFT +DFS 
Sbjct: 631 NFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACK-------NVFT-LDFSQ 682

Query: 769 NGFDGEI-SQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPL 827
           N   G I  +V   +  +  LNLS N F+G+IP S GN+  L SLDLSSNN+ G+IP+ L
Sbjct: 683 NNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESL 742

Query: 828 TSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCG 869
            +L++L  L L+ N L G +P    F        +GN  LCG
Sbjct: 743 ANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCG 784

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  238 bits (606), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 257/881 (29%), Positives = 387/881 (43%), Gaps = 194/881 (22%)

Query: 31  QSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKDTN------CCSWDGVTCDMATGNVI 84
           +++AL+++K  F+   +SS        K+ SW  D N      C SW GV+C+ + G++ 
Sbjct: 33  EANALLKWKSTFT---NSS--------KLSSWVHDANTNTSFSCTSWYGVSCN-SRGSIE 80

Query: 85  SLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNI 144
            L+L+ + + G                   +  DF +  +S       NL +  LS + +
Sbjct: 81  ELNLTNTGIEG-------------------TFQDFPFISLS-------NLAYVDLSMNLL 114

Query: 145 NCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQN 204
           +  IP +   L              S L    LS   L G    ++ +L N  ++ L QN
Sbjct: 115 SGTIPPQFGNL--------------SKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQN 160

Query: 205 PSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNL 264
                            YL       S +P  +GN++ +  L L  ++  G +P+SLGNL
Sbjct: 161 -----------------YLT------SVIPSELGNMESMTDLALSQNKLTGSIPSSLGNL 197

Query: 265 TQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQ 323
             L +L+L  N  +G IP  L N+  +T L LS N   G IP    NL  +    L  N 
Sbjct: 198 KNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENY 257

Query: 324 LAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSK- 382
           L G IP     ++++  + L+ N  +G+IPS L +L  L  + L  N L+G I   P K 
Sbjct: 258 LTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGI---PPKL 314

Query: 383 ----SLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYL 438
               S+ ++ LSNN+L GSIPSS+  L NLT L L  N  +G+  P +   +  +  L L
Sbjct: 315 GNIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPEL-GNMESMIDLQL 373

Query: 439 SHNSLSLGNTFKIDSPFPKFSYLSLSACNI----SAFPRFLRTQDELSYLDLSENKIDGQ 494
           ++N L    T  I S F     L+     +       P+ L   + +  LDLS+NK+ G 
Sbjct: 374 NNNKL----TGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGS 429

Query: 495 IPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLP---VPPSSLRV 551
           +P        DS        NF TK++         L LR N L G +P      S L  
Sbjct: 430 VP--------DSFG------NF-TKLES--------LYLRVNHLSGAIPPGVANSSHLTT 466

Query: 552 LLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIP----EC--------IGN------ 593
           L++  N FTG    ++C    L  + L  N L G IP    +C        +GN      
Sbjct: 467 LILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDI 526

Query: 594 -----FSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEV 648
                  P L+ +D  +N+ +G I   + +S  L +L ++NN + GAIP  + N T++  
Sbjct: 527 FEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNNNITGAIPTEIWNMTQLVE 586

Query: 649 LDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESF-PKLRILDLSINNFS 707
           LD+    +    P  +GNL  L  L L  N+  G V       SF   L  LDLS NNFS
Sbjct: 587 LDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRV---PAGLSFLTNLESLDLSSNNFS 643

Query: 708 GYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFS 767
             +P+ F                          DS +                   ++ S
Sbjct: 644 SEIPQTF--------------------------DSFLK---------------LHDMNLS 662

Query: 768 SNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPL 827
            N FDG I + + KL  L  L+LSHN   G+IPS L +L  L+ LDLS NN++G IP   
Sbjct: 663 RNKFDGSIPR-LSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTF 721

Query: 828 TSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLC 868
             + +L+ +++S+N+L+GP+P  P F     D+   N+GLC
Sbjct: 722 EGMIALTNVDISNNKLEGPLPDTPTFRKATADALEENIGLC 762

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  235 bits (600), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 216/659 (32%), Positives = 304/659 (46%), Gaps = 87/659 (13%)

Query: 232 ELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQL 291
           ++P  I +LK L  L L  +QF G +P  + NL  L  L L  N+ +G +P  LS L QL
Sbjct: 80  QIPKEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELPQL 139

Query: 292 TYLDLSSNSFFGEIPDIF--NLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFS 349
            YLDLS N F G +P  F  +L  +S  D+SNN L+G IP    +L NL  + +  NSFS
Sbjct: 140 LYLDLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLNSFS 199

Query: 350 GTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSK--SLQNIYLSNNRLQGSIPSSIFELVN 407
           G IPS + ++ LL+         +G + +  SK   L  + LS N L+ SIP S  EL N
Sbjct: 200 GQIPSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGELHN 259

Query: 408 LTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACN 467
           L+ L L S    G+  P +      LK L LS NSLS     ++ S  P  ++ +     
Sbjct: 260 LSILNLVSAELIGLIPPEL-GNCKSLKSLMLSFNSLSGPLPLEL-SEIPLLTFSAERNQL 317

Query: 468 ISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEI----------------------GKD 505
             + P ++     L  L L+ N+  G+IP  I +                       G  
Sbjct: 318 SGSLPSWMGKWKVLDSLLLANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPRELCGSG 377

Query: 506 SLSYVNLSHNFITKMKQIPW---KNLGYLDLRSNLLQGPLP--VPPSSLRVLLISNNQFT 560
           SL  ++LS N ++   +  +    +LG L L +N + G +P  +    L  L + +N FT
Sbjct: 378 SLEAIDLSGNLLSGTIEEVFDGCSSLGELLLTNNQINGSIPEDLWKLPLMALDLDSNNFT 437

Query: 561 GEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESN 620
           GEI  S+     L     S NRL G +P  IGN + SL  L L +N+L G IP    +  
Sbjct: 438 GEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGN-AASLKRLVLSDNQLTGEIPREIGKLT 496

Query: 621 WLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKF 680
            L  LNLN N   G IP  L +CT +  LD+G+  +    P  +  L +LQ LVL  N  
Sbjct: 497 SLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNL 556

Query: 681 HGSVREFEPKESFPKLR-----------ILDLSINNFSGYLPERFLENLNAMRNVSADEG 729
            GS+   +P   F ++            I DLS N  SG +PE   E L           
Sbjct: 557 SGSIPS-KPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECL----------- 604

Query: 730 KLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLN 789
                                         V   I  S+N   GEI   + +L +L +L+
Sbjct: 605 ------------------------------VLVEISLSNNHLSGEIPASLSRLTNLTILD 634

Query: 790 LSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIP 848
           LS N  TG IP  +GN  KL+ L+L++N + G IP+    L SL  LNL+ N+LDGP+P
Sbjct: 635 LSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVP 693

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  223 bits (569), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 208/619 (33%), Positives = 292/619 (47%), Gaps = 82/619 (13%)

Query: 252 QFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-N 310
           Q  G +   +  L  L  L L  N+F+G IP+SL+   +L  + L  NS  G++P    N
Sbjct: 79  QLSGRISDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRN 138

Query: 311 LTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDN 370
           LT +  F+++ N+L+G IP       +L  + +++N+FSG IPS L +L  L+ + LS N
Sbjct: 139 LTSLEVFNVAGNRLSGEIPV--GLPSSLQFLDISSNTFSGQIPSGLANLTQLQLLNLSYN 196

Query: 371 QLSGHIDEFPS-----KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPY 425
           QL+G   E P+     +SLQ ++L  N LQG++PS+I    +L  L    N   G+  P 
Sbjct: 197 QLTG---EIPASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVI-PA 252

Query: 426 MFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNIS--AFPRFLRTQDE--- 480
            +  L KL+ L LS+N+      F    PF  F   SL+   +   AF   +R +     
Sbjct: 253 AYGALPKLEVLSLSNNN------FSGTVPFSLFCNTSLTIVQLGFNAFSDIVRPETTANC 306

Query: 481 ---LSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNL 537
              L  LDL EN+I G+ P W++ I    LS  NL                   D+  NL
Sbjct: 307 RTGLQVLDLQENRISGRFPLWLTNI----LSLKNL-------------------DVSGNL 343

Query: 538 LQGPLPVPPSSLRVL---LISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNF 594
             G +P    +L+ L    ++NN  TGEI   I    +LDVLD   N L G IPE +G +
Sbjct: 344 FSGEIPPDIGNLKRLEELKLANNSLTGEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLG-Y 402

Query: 595 SPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNI 654
             +L VL L  N  +G +P +      L  LNL  N L G+ P  L+  T +  LD+   
Sbjct: 403 MKALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGN 462

Query: 655 KINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERF 714
           + + A P  + NL  L  L L  N F G +       +  KL  LDLS  N SG +P   
Sbjct: 463 RFSGAVPVSISNLSNLSFLNLSGNGFSGEIPA--SVGNLFKLTALDLSKQNMSGEVPVE- 519

Query: 715 LENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEI-----EMQKILTVFTTIDFSSN 769
              L+ + NV                   V+ L+G        E    L     ++ SSN
Sbjct: 520 ---LSGLPNVQ------------------VIALQGNNFSGVVPEGFSSLVSLRYVNLSSN 558

Query: 770 GFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTS 829
            F GEI Q  G L  L  L+LS NH +G IP  +GN + LE L+L SN + G IP  L+ 
Sbjct: 559 SFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLSR 618

Query: 830 LTSLSVLNLSHNRLDGPIP 848
           L  L VL+L  N L G IP
Sbjct: 619 LPRLKVLDLGQNNLSGEIP 637

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  222 bits (566), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 211/642 (32%), Positives = 315/642 (49%), Gaps = 64/642 (9%)

Query: 230 FSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLV 289
           F  + D  GN+  +  L L  S   G + + +G L  L  L L  N+FSG +PS+L N  
Sbjct: 67  FGVICDLSGNV--VETLNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPSTLGNCT 124

Query: 290 QLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSF 348
            L YLDLS+N F GE+PDIF +L  ++F  L  N L+G IP+    L  LV +R++ N+ 
Sbjct: 125 SLEYLDLSNNDFSGEVPDIFGSLQNLTFLYLDRNNLSGLIPASVGGLIELVDLRMSYNNL 184

Query: 349 SGTIPSWLFSLPLLEYVRLSDNQLSGHIDE--FPSKSLQNIYLSNNRLQGSIPSSIFELV 406
           SGTIP  L +   LEY+ L++N+L+G +    +  ++L  +++SNN L G +        
Sbjct: 185 SGTIPELLGNCSKLEYLALNNNKLNGSLPASLYLLENLGELFVSNNSLGGRLHFGSSNCK 244

Query: 407 NLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSAC 466
            L  L L  N+F G   P                    +GN   + S       L +  C
Sbjct: 245 KLVSLDLSFNDFQGGVPP-------------------EIGNCSSLHS-------LVMVKC 278

Query: 467 NISA-FPRFLRTQDELSYLDLSENKIDGQIPSWISEIGK-DSLSYVNLSHNFITKMKQIP 524
           N++   P  +    ++S +DLS+N++ G IP    E+G   SL  + L+ N +    +IP
Sbjct: 279 NLTGTIPSSMGMLRKVSVIDLSDNRLSGNIP---QELGNCSSLETLKLNDNQL--QGEIP 333

Query: 525 -----WKNLGYLDLRSNLLQGPLPV---PPSSLRVLLISNNQFTGEIIHSICDIIALDVL 576
                 K L  L+L  N L G +P+      SL  +L+ NN  TGE+   +  +  L  L
Sbjct: 334 PALSKLKKLQSLELFFNKLSGEIPIGIWKIQSLTQMLVYNNTLTGELPVEVTQLKHLKKL 393

Query: 577 DLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAI 636
            L NN   G IP  +G  + SL  +DL  NR  G IP        LR   L +N+L G I
Sbjct: 394 TLFNNGFYGDIPMSLG-LNRSLEEVDLLGNRFTGEIPPHLCHGQKLRLFILGSNQLHGKI 452

Query: 637 PQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKE--SFP 694
           P S+  C  +E + + + K++   P +  +L  L  + L SN F GS+    P+   S  
Sbjct: 453 PASIRQCKTLERVRLEDNKLSGVLPEFPESL-SLSYVNLGSNSFEGSI----PRSLGSCK 507

Query: 695 KLRILDLSINNFSGYLPERFLENLNAMR--NVSAD--EG----KLRYLGEEYYQDSVVVT 746
            L  +DLS N  +G +P   L NL ++   N+S +  EG    +L       Y D    +
Sbjct: 508 NLLTIDLSQNKLTGLIPPE-LGNLQSLGLLNLSHNYLEGPLPSQLSGCARLLYFDVGSNS 566

Query: 747 LKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNL 806
           L G+     +     +T+  S N F G I Q + +L  L  L ++ N F G+IPSS+G L
Sbjct: 567 LNGSIPSSFRSWKSLSTLVLSDNNFLGAIPQFLAELDRLSDLRIARNAFGGKIPSSVGLL 626

Query: 807 AKLE-SLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPI 847
             L   LDLS+N   G+IP  L +L +L  LN+S+N+L GP+
Sbjct: 627 KSLRYGLDLSANVFTGEIPTTLGALINLERLNISNNKLTGPL 668

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  221 bits (564), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 210/634 (33%), Positives = 300/634 (47%), Gaps = 53/634 (8%)

Query: 255 GPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIP-DIFNLTQ 313
           GP+P  L     L +L L  N F G IP  L+ ++ L  L L  N  FG IP  I NL+ 
Sbjct: 105 GPIPQDLSLCRSLEVLDLCTNRFHGVIPIQLTMIITLKKLYLCENYLFGSIPRQIGNLSS 164

Query: 314 VSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLS 373
           +    + +N L G IP   ++L+ L +IR   N FSG IPS +     L+ + L++N L 
Sbjct: 165 LQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLE 224

Query: 374 GHIDEFPSK--SLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLI 431
           G + +   K  +L ++ L  NRL G IP S+  +  L  L L  N F+G + P    KL 
Sbjct: 225 GSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYFTG-SIPREIGKLT 283

Query: 432 KLKYLYLSHNSLS------LGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLD 485
           K+K LYL  N L+      +GN   ID+    FS   L+      F   L     L  L 
Sbjct: 284 KMKRLYLYTNQLTGEIPREIGNL--IDAAEIDFSENQLTGFIPKEFGHIL----NLKLLH 337

Query: 486 LSENKIDGQIPSWISEIG---KDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPL 542
           L EN + G IP  + E+    K  LS   L+     +++ +P+  L  L L  N L+G  
Sbjct: 338 LFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFLPY--LVDLQLFDNQLEGK- 394

Query: 543 PVPP-----SSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPS 597
            +PP     S+  VL +S N  +G I    C    L +L L +N+L+G IP  +     S
Sbjct: 395 -IPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKT-CKS 452

Query: 598 LSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKIN 657
           L+ L L +N+L GS+P        L +L L+ N L G I   L     +E L + N    
Sbjct: 453 LTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFT 512

Query: 658 DAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKE--SFPKLRILDLSINNFSGYLPERFL 715
              P  +GNL ++    + SN+  G +    PKE  S   ++ LDLS N FSGY+ +   
Sbjct: 513 GEIPPEIGNLTKIVGFNISSNQLTGHI----PKELGSCVTIQRLDLSGNKFSGYIAQEL- 567

Query: 716 ENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEI 775
                        G+L YL      D+    L G        LT    +    N     I
Sbjct: 568 -------------GQLVYLEILRLSDN---RLTGEIPHSFGDLTRLMELQLGGNLLSENI 611

Query: 776 SQVIGKLHSLRL-LNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLS 834
              +GKL SL++ LN+SHN+ +G IP SLGNL  LE L L+ N ++G+IP  + +L SL 
Sbjct: 612 PVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLL 671

Query: 835 VLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLC 868
           + N+S+N L G +P    F      ++ GN GLC
Sbjct: 672 ICNISNNNLVGTVPDTAVFQRMDSSNFAGNHGLC 705

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  221 bits (562), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 216/704 (30%), Positives = 311/704 (44%), Gaps = 97/704 (13%)

Query: 213 ANNWTSPIEYLDVSETSF---SELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTL 269
            +N++S  E L ++ +S     +L  SIG L  L +L L Y+   G +P  +GN + L +
Sbjct: 66  CSNYSSDPEVLSLNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEI 125

Query: 270 LHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIP-DIFNLTQVSFFDLSNNQLAGPI 328
           L L +N F G IP  +  LV L  L + +N   G +P +I NL  +S     +N ++G +
Sbjct: 126 LKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQL 185

Query: 329 PSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS-----KS 383
           P     L+ L   R   N  SG++PS +     L  + L+ NQLSG   E P      K 
Sbjct: 186 PRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVMLGLAQNQLSG---ELPKEIGMLKK 242

Query: 384 LQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSL 443
           L  + L  N   G IP  I    +L  L L  N   G   P     L  L++LYL  N L
Sbjct: 243 LSQVILWENEFSGFIPREISNCTSLETLALYKNQLVG-PIPKELGDLQSLEFLYLYRNGL 301

Query: 444 SLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIG 503
           +                           PR +        +D SEN + G+IP  +  I 
Sbjct: 302 N------------------------GTIPREIGNLSYAIEIDFSENALTGEIPLELGNI- 336

Query: 504 KDSLSYVNLSHNFITKMKQIPW---KNLGYLDLRSNLLQGPLP----------------- 543
            + L  + L  N +T    +     KNL  LDL  N L GP+P                 
Sbjct: 337 -EGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQN 395

Query: 544 -----VPP-----SSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGN 593
                +PP     S L VL +S+N  +G I   +C    + +L+L  N L+G IP  I  
Sbjct: 396 SLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGI-T 454

Query: 594 FSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGN 653
              +L  L L  N L G  P    +   + ++ L  N   G+IP+ + NC+ ++ L + +
Sbjct: 455 TCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLAD 514

Query: 654 IKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESF--PKLRILDLSINNFSGYLP 711
                  P  +G L +L  L + SNK  G V    P E F    L+ LD+  NNFSG LP
Sbjct: 515 NGFTGELPREIGMLSQLGTLNISSNKLTGEV----PSEIFNCKMLQRLDMCCNNFSGTLP 570

Query: 712 ERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGF 771
                        S  + +L  L       ++ V L          L+  T +    N F
Sbjct: 571 SEV---------GSLYQLELLKLSNNNLSGTIPVALGN--------LSRLTELQMGGNLF 613

Query: 772 DGEISQVIGKLHSLRL-LNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSL 830
           +G I + +G L  L++ LNLS+N  TG+IP  L NL  LE L L++NN++G+IP    +L
Sbjct: 614 NGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANL 673

Query: 831 TSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTK 874
           +SL   N S+N L GPI   P        S+IGN GLCG PL +
Sbjct: 674 SSLLGYNFSYNSLTGPI---PLLRNISMSSFIGNEGLCGPPLNQ 714

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	901
225462116	1001	PREDICTED: receptor-like protein 12-like	0.961	0.865	0.504	0.0
224116970	921	predicted protein [Populus trichocarpa]	0.920	0.900	0.503	0.0
225455498	980	PREDICTED: receptor-like protein 12-like	0.941	0.865	0.488	0.0
225459979	979	PREDICTED: receptor-like protein 12-like	0.940	0.865	0.489	0.0
147793123	951	hypothetical protein VITISV_032542 [Viti	0.941	0.891	0.487	0.0
359493546	985	PREDICTED: LRR receptor-like serine/thre	0.940	0.859	0.485	0.0
359493544	978	PREDICTED: receptor-like protein 12-like	0.938	0.865	0.485	0.0
359493539	1001	PREDICTED: receptor-like protein 12-like	0.938	0.845	0.478	0.0
357493403	1015	Receptor-like protein kinase [Medicago t	0.945	0.839	0.439	0.0
357493511	1020	Receptor-like protein kinase [Medicago t	0.946	0.836	0.440	0.0

>gi|225462116|ref|XP_002263233.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  825 bits (2130), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/961 (50%), Positives = 614/961 (63%), Gaps = 95/961 (9%)

Query: 10  FFSLQLLLLHSLSYA-KHCPREQSSALIQFKQLFSFD--EDSSFVCQ-RSYPKMISWKKD 65
           F S   ++  SLS + K CP  Q+ AL++ KQLFS D    SS  C   S+ K  +WK+ 
Sbjct: 10  FLSYSPVICFSLSNSTKLCPHHQNVALLRLKQLFSIDVSASSSDDCNLASFAKTDTWKEG 69

Query: 66  TNCCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEIS 125
           TNCCSWDGVTC+  TG +I LDLSCS L+G I +N+SLF L HL+ LNL+ NDF+ S IS
Sbjct: 70  TNCCSWDGVTCNRVTGLIIGLDLSCSGLYGTIDSNSSLFLLPHLRRLNLAFNDFNKSSIS 129

Query: 126 SGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLD------------SLKNLSSSLT 173
           + F +FR +TH +LS S  +  I  EIS L  + V LD            S   L+ +LT
Sbjct: 130 AKFGQFRRMTHLNLSFSGFSGVIAPEISHLS-NLVSLDLSIYSGLGLETSSFIALARNLT 188

Query: 174 SLS---------------------------LSDCILQGNFPINIFHLPNPQMIRLSQNPS 206
            L                            LS C L G FP +   LPN ++++L  N  
Sbjct: 189 KLQKLHLRGINVSSILPISLLNLSSLRSMDLSSCQLYGRFPDDDLQLPNLKVLKLKGNHD 248

Query: 207 LAGKFPANNWTSPIEYLDVSETSFS-ELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLT 265
           L+G FP  N ++ +  LD+S T+FS ELP SIG LK L  L L  ++F G +P+S+G+L 
Sbjct: 249 LSGNFPKFNESNSMLLLDLSSTNFSGELPSSIGILKSLESLDLSSTKFSGELPSSIGSLK 308

Query: 266 QLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF---------------- 309
            L  L L H NFSG IPS L NL Q+T+LDLS N F GEI ++F                
Sbjct: 309 SLESLDLSHCNFSGSIPSVLGNLTQITHLDLSRNQFDGEISNVFNKIRKLIVLDLSSNSF 368

Query: 310 ---------NLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLP 360
                    NLT++SF DLSNN L G IPSH   L +L  I L+NN  +GTIPSWLFSLP
Sbjct: 369 RGQFIASLDNLTELSFLDLSNNNLEGIIPSHVKELSSLSDIHLSNNLLNGTIPSWLFSLP 428

Query: 361 LLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSG 420
            L  + LS N+L+GHIDEF S SL++I LS+N L G +PSSIFELVNLT LQL SNN  G
Sbjct: 429 SLIRLDLSHNKLNGHIDEFQSPSLESIDLSSNELDGPVPSSIFELVNLTYLQLSSNNLGG 488

Query: 421 IAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDE 480
           I E  MF  L  L YL LS+N L+L N    +   P    L LS+CNIS FPRFL +Q+ 
Sbjct: 489 IVETDMFMNLENLVYLDLSYNILTLSNYSHSNCALPFLETLLLSSCNISEFPRFLCSQEV 548

Query: 481 LSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQG 540
           L +LDLS NKI GQ+P W   +G ++LSY NLS N +T+ ++ PWKN+ +LDL SNLLQG
Sbjct: 549 LEFLDLSNNKIYGQLPKWAWNMGTETLSYFNLSQNLLTRFERFPWKNMLFLDLHSNLLQG 608

Query: 541 PLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSV 600
           PLP                       IC++  + VLD SNN L+G IP+C+GNFS SLSV
Sbjct: 609 PLP---------------------SLICEMSYISVLDFSNNNLSGLIPQCLGNFSESLSV 647

Query: 601 LDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAF 660
           LDLR N+L+G+IP TF++ N++R+L  N N+L G +P+SL+NC +++VLD+GN +IND F
Sbjct: 648 LDLRMNQLHGNIPETFSKGNFIRNLGFNGNQLEGPLPRSLINCRRLQVLDLGNNRINDTF 707

Query: 661 PYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNA 720
           PYWL  LPELQVL+LRSN+FHG +     +  FPKLRI+DLS N+FSG LPE +L+N  A
Sbjct: 708 PYWLETLPELQVLILRSNRFHGHISGSNFQFPFPKLRIMDLSRNDFSGSLPEMYLKNFKA 767

Query: 721 MRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIG 780
           M NV+ D+ KL+Y+GE YY+DS++ T+KG + E   IL+ FTTID SSN F GEI   IG
Sbjct: 768 MMNVTEDKMKLKYMGEYYYRDSIMGTIKGFDFEFV-ILSTFTTIDLSSNRFQGEILDFIG 826

Query: 781 KLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSH 840
            L SLR LNLSHN+ TG IPSSLGNL  LESLDLSSN ++G+IP+ LTSLT L VLNLS 
Sbjct: 827 SLSSLRELNLSHNNLTGHIPSSLGNLMVLESLDLSSNKLSGRIPRELTSLTFLEVLNLSK 886

Query: 841 NRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKCGNDEAPTTFHEEDEEAESSSSWFD 900
           N L G IP G QF+TF  +SY GN+GLCG PL+KKC  DEAP    EE+ E+++    FD
Sbjct: 887 NHLTGVIPRGNQFDTFANNSYSGNIGLCGLPLSKKCVVDEAPQPPKEEEVESDTG---FD 943

Query: 901 W 901
           W
Sbjct: 944 W 944

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116970|ref|XP_002331797.1| predicted protein [Populus trichocarpa] gi|222874493|gb|EEF11624.1| predicted protein [Populus trichocarpa]

 Score =  756 bits (1951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/885 (50%), Positives = 579/885 (65%), Gaps = 56/885 (6%)

Query: 59  MISWKKDTNCCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHND 118
           M SWK  T+CCSWDGV C   TG+VI+LDLSCS L GN+ +N+SLFHL HL+ LNL+ N 
Sbjct: 1   MASWKSGTDCCSWDGVACHGVTGHVIALDLSCSGLRGNLSSNSSLFHLSHLRRLNLAFNY 60

Query: 119 FDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEIS------------------------- 153
           F+ S I   F  F +LTH +LS +  + ++P EIS                         
Sbjct: 61  FNRSSIPPEFGMFSSLTHLNLSSTWFSGQVPTEISHLSKLISLDLSLNEPLILEAPAMKM 120

Query: 154 --------------FLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMI 199
                         ++ MS+V L SL NLSSSLTSLSL+ C LQG FP NIFHLPN Q++
Sbjct: 121 IVQNLTLVREIFLDYINMSSVDLGSLMNLSSSLTSLSLNLCGLQGQFPENIFHLPNLQLL 180

Query: 200 RLSQNPSLAGKFPANNWTSPIEYLDVSETSFSE-LPDSIGNLKLLGRLMLGYSQFVGPVP 258
            L  N  L G+ P +NW+S +E L +  TSFS  LP+ IGNL  +  L LG   F G VP
Sbjct: 181 SLLLNSDLYGRLPVSNWSSSLELLKLGSTSFSGGLPEIIGNLDSIKVLDLGNCAFYGSVP 240

Query: 259 ASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFF 317
           ASLGNL QL  L L +NN++G IP    NL +L  L L   +F G +P  +FNLT++   
Sbjct: 241 ASLGNLQQLNQLDLSNNNWTGQIPDVFGNLSKLNSLSLQVGNFSGMLPSSVFNLTELLRL 300

Query: 318 DLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHID 377
           DLS NQL G +P H   L N+  + L+ N  SGTIPS LF LP L +  L++N L+G + 
Sbjct: 301 DLSQNQLEGTLPDHICGLDNVTYLDLSYNLLSGTIPSCLFGLPSLVWFNLNNNHLTGELG 360

Query: 378 EFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLY 437
           E             N++ G IP SI ELVNLT+  + SNN SGI +  +F+ +  L  L 
Sbjct: 361 EHC-----------NKINGLIPPSISELVNLTNFDVSSNNLSGIVDLNLFSNMKNLWGLD 409

Query: 438 LSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPS 497
           LSHNSLS+      +S +P+F  L+LS+CNI  FP FL+ Q++L++L LS N+I G+IP 
Sbjct: 410 LSHNSLSVVTNNNRNSTWPQFYKLALSSCNIIEFPDFLKIQNQLNFLSLSHNRIHGEIPK 469

Query: 498 WISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNN 557
           W+S  G  SL Y++LSHNF+T + ++P  +L YLDL SNLLQ P P+ P S+ +LLI+NN
Sbjct: 470 WLSAKGMQSLQYLDLSHNFLTIVNELP-PSLQYLDLTSNLLQQPFPILPQSMYILLIANN 528

Query: 558 QFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFA 617
           + TGEI   IC+I    +++LSNN L+G IP+C+GNFS  LSVL+LR+N  +G+IPG+F 
Sbjct: 529 KLTGEIPPWICNITTFQIINLSNNSLSGNIPQCLGNFSTELSVLNLRSNSFHGTIPGSFT 588

Query: 618 ESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRS 677
           E N +RSL+LN NEL G++P SL NC  +EVLD+GN  IND+FP WL  LP+LQVLVLRS
Sbjct: 589 EGNKIRSLDLNGNELEGSLPLSLANCKMLEVLDLGNNYINDSFPLWLQTLPKLQVLVLRS 648

Query: 678 NKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSAD-EGKLRYLGE 736
           N+ HGS+        F  LRI+DLS N F G LP +++ N  AM+ V  + +   +Y+GE
Sbjct: 649 NRLHGSIGNPTAISPFSSLRIIDLSHNEFIGLLPTQYIANFQAMKKVDGEVKATPKYIGE 708

Query: 737 EYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFT 796
            YYQDS+V+T+KGTEI M++ILT+FTTID SSN F+G+I + +G L SL +LN+S N  T
Sbjct: 709 IYYQDSIVLTMKGTEIPMERILTIFTTIDLSSNRFEGQIPKEVGLLSSLIVLNISRNSVT 768

Query: 797 GQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTF 856
           GQIPSSLGNL  LESLDLSSN + G IP  LT LT L+VLNLS+N+L GPIPHG QF+TF
Sbjct: 769 GQIPSSLGNLTALESLDLSSNGLGGGIPSQLTRLTFLAVLNLSYNQLVGPIPHGSQFDTF 828

Query: 857 QEDSYIGNLGLCGFPLTKKCGNDEAPTTFHEEDEEAESSSSWFDW 901
           Q DSY+GNL LCGFPL+ KC  D AP       +E E  +S F+W
Sbjct: 829 QNDSYVGNLRLCGFPLSVKCSGDVAPQP--PPFQEKEDPASLFNW 871

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455498|ref|XP_002264793.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/925 (48%), Positives = 564/925 (60%), Gaps = 77/925 (8%)

Query: 24  AKHCPREQSSALIQFKQLFSFDEDSSFVCQR----SYPKMISWKKDTNCCSWDGVTCDMA 79
            K CP  Q+ AL+  KQ FS +  SS  C      SYPK  SWKK ++CCSWDGVTCD  
Sbjct: 29  TKLCPHHQTLALLHLKQSFSINNSSSLDCHAVGVTSYPKTESWKKGSDCCSWDGVTCDWV 88

Query: 80  TGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSL 139
           TG+VI LDLSCSWL G I +NT+LF L H+Q LNL+ N+F  S IS GF RF +LTH +L
Sbjct: 89  TGHVIELDLSCSWLFGTIHSNTTLFLLPHIQRLNLAFNNFSGSSISVGFGRFSSLTHLNL 148

Query: 140 SDSNINCKIPYEISFLKMSTVVLD------------SLKNLSSSLTSL--------SLSD 179
           SDS  +  I  EIS L  + V LD               +L  +LT L        S+S 
Sbjct: 149 SDSGFSGLISPEISHLS-NLVSLDLSWNSDTEFAPHGFNSLVQNLTKLQKLHLGGISISS 207

Query: 180 -------------------CILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPI 220
                              C L G FP +  HLP  +++ L +N  L+G FP  N  + +
Sbjct: 208 VFPNSLLNRSSLISLHLSSCGLHGRFPDHDIHLPKLEVLNLWRNDDLSGNFPRFNENNSL 267

Query: 221 EYLDVSETSFS-ELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSG 279
             L +S  +FS ELP SIGNLK L  L L   +F G +PASL NLTQ+T L+L  N+FSG
Sbjct: 268 TELYLSSKNFSGELPASIGNLKSLQTLDLSNCEFSGSIPASLENLTQITSLNLNGNHFSG 327

Query: 280 HIPSSLSNLVQLTYLDLSSNSFFGEIP-DIFNLTQVSFFDLSNNQLAGPIPSHGSRL--Q 336
            IP+  +NL  L  + LS+N F G+ P  I NLT + + D S NQL G IPSH +     
Sbjct: 328 KIPNIFNNLRNLISIGLSNNHFSGQFPPSIGNLTNLYYLDFSYNQLEGVIPSHVNEFLFS 387

Query: 337 NLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQG 396
           +L  + L  N F+G IPSWL++L  L  + L  N+L+GHI EF   SL+ I LS N L G
Sbjct: 388 SLSYVYLGYNLFNGIIPSWLYTLLSLVVLHLGHNKLTGHIGEFQFDSLEMIDLSMNELHG 447

Query: 397 SIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFP 456
            IPSSIF+LVNL  L L SNN SG+ E   F KL  L  LYLS+N LSL  +   +   P
Sbjct: 448 PIPSSIFKLVNLRSLYLSSNNLSGVLETSNFGKLRNLINLYLSNNMLSLTTSSNSNCILP 507

Query: 457 KFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNF 516
           K                       +  +DLS NKI G    W   +GKD+L Y+NLS+N 
Sbjct: 508 K-----------------------IESIDLSNNKISGV---WSWNMGKDTLWYLNLSYNS 541

Query: 517 ITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVL 576
           I+  + +PWKN+G LDL SNLLQG LP PP+S     + +N+ +G I   IC + ++ VL
Sbjct: 542 ISGFEMLPWKNVGILDLHSNLLQGALPTPPNSTFFFSVFHNKLSGGISPLICKVSSIRVL 601

Query: 577 DLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAI 636
           DLS+N L+G +P C+GNFS  LSVL+LR NR +G+IP +F + N +R+L+ N+N L G +
Sbjct: 602 DLSSNNLSGMLPHCLGNFSKDLSVLNLRRNRFHGTIPQSFLKGNVIRNLDFNDNRLEGLV 661

Query: 637 PQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKL 696
           P+SL+ C K+EVL++GN KIND FP+WLG LPELQVLVLRSN FHG +   + K  F  L
Sbjct: 662 PRSLIICRKLEVLNLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGCSKLKSPFMSL 721

Query: 697 RILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQK 756
           RI+DL+ N+F G LPE +L +L    NV  D    +Y+G  YY+DSV+VT+KG EIE  K
Sbjct: 722 RIIDLAHNDFEGDLPEMYLRSLKVTMNVDEDNMTRKYMGGNYYEDSVMVTIKGLEIEFVK 781

Query: 757 ILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSS 816
           IL  F TID SSN F GEI Q IG L+SLR LNLSHN+ TG IPSS GNL  LESLDLSS
Sbjct: 782 ILNAFATIDLSSNKFQGEIPQSIGNLNSLRGLNLSHNNLTGHIPSSFGNLKLLESLDLSS 841

Query: 817 NNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKC 876
           N + G IP+ LTSL  L VLNLS N L G IP G QF+TF  DSY GN  LCGFPL+KKC
Sbjct: 842 NKLIGSIPQQLTSLIFLEVLNLSQNHLTGFIPKGNQFDTFGNDSYNGNSELCGFPLSKKC 901

Query: 877 GNDEAPTTFHEEDEEAESSSSWFDW 901
             DE P    EED E E+    FDW
Sbjct: 902 IADETPEPSKEEDAEFENK---FDW 923

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459979|ref|XP_002267546.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/924 (48%), Positives = 574/924 (62%), Gaps = 77/924 (8%)

Query: 25  KHCPREQSSALIQFKQLFSFDEDSSFV-CQ----RSYPKMISWKKDTNCCSWDGVTCDMA 79
           K CP  QS AL+  ++ FS  ++SSF  C      SYPK  SWKK ++CCSWDGVTCD  
Sbjct: 29  KLCPGHQSRALLHLRKSFSVIDNSSFWGCDYYGVTSYPKTESWKKGSDCCSWDGVTCDRV 88

Query: 80  TGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSL 139
           TG+VI LDLSCSWL+G I +N++LF   HL+ LNL+ NDF+ S +S+ F RF +LTH +L
Sbjct: 89  TGHVIGLDLSCSWLYGTIHSNSTLFLFPHLRRLNLAFNDFNGSSVSTRFGRFSSLTHLNL 148

Query: 140 SDSNINCKIPYEISFLK--------------------------------------MSTVV 161
           S+S  +  I  EIS L                                       +S+V 
Sbjct: 149 SESLFSGLISPEISHLANLVSLDLSGNGAEFAPHGFNSLLLNLTKLQKLHLGGISISSVF 208

Query: 162 LDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIE 221
            +SL N  SSL SL LSDC L G+F  +  HLP  +++ L  N +L G FP  +  + + 
Sbjct: 209 PNSLLN-QSSLISLDLSDCGLHGSFHDHDIHLPKLEVLNLWGNNALNGNFPRFSENNSLL 267

Query: 222 YLDVSETSFS-ELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGH 280
            L ++ T+FS ELP SIGNLK L  L L   QF+G +P SL NL Q+T L+L+ N+FSG 
Sbjct: 268 ELVLASTNFSGELPASIGNLKSLKTLDLSICQFLGSIPTSLENLKQITSLNLIGNHFSGK 327

Query: 281 IPSSLSNLVQLTYLDLSSNSFFGEIP-DIFNLTQVSFFDLSNNQLAGPIPSHGSRLQ--N 337
           IP+  +NL  L  L LS+N+F G  P  I NLT +   D SNNQL G I SH +     +
Sbjct: 328 IPNIFNNLRNLISLGLSNNNFSGHFPPSIGNLTNLYELDFSNNQLEGVIHSHVNEFSFSS 387

Query: 338 LVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGS 397
           L  + L  N F+GTIPSWL++L  L  + LS N+L+GHIDEF   SL+NIYL+ N L G 
Sbjct: 388 LSYVNLGYNLFNGTIPSWLYTLSSLVVLDLSHNKLTGHIDEFQFDSLENIYLNMNELHGP 447

Query: 398 IPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPK 457
           IPSSIF+LVNL  L L SNN S + E   F  L  L  L LS+N L L  +   +S  P 
Sbjct: 448 IPSSIFKLVNLRYLYLSSNNLSEVLETNKFGNLRNLIELDLSNNMLLLTTSGNSNSILP- 506

Query: 458 FSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFI 517
                    NI +             LDLS NKI G    W   +G D+L Y+NLS+N I
Sbjct: 507 ---------NIES-------------LDLSNNKISGV---WSWNMGNDTLWYLNLSYNSI 541

Query: 518 TKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLD 577
           +  K +PWKN+G LDL SNLLQGPLP PP+S     +S+N+ +GEI   IC   ++++LD
Sbjct: 542 SGFKMLPWKNIGILDLHSNLLQGPLPTPPNSTFFFSVSHNKLSGEISSLICRASSMEILD 601

Query: 578 LSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIP 637
           LS+N L+G +P C+GNFS  LSVL+LR NR +G+IP TF + N +R L+ N+N+L G +P
Sbjct: 602 LSDNNLSGRLPHCLGNFSKYLSVLNLRRNRFHGNIPQTFLKGNAIRDLDFNDNQLDGLVP 661

Query: 638 QSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLR 697
           +SL+ C K+EVLD+GN KIND FP+WLG L +LQVLVLRSN FHG +R  + K  F  LR
Sbjct: 662 RSLIICRKLEVLDLGNNKINDTFPHWLGTLSKLQVLVLRSNSFHGHIRHSKIKSPFMSLR 721

Query: 698 ILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKI 757
           I+DL+ N+F G LPE +L +L A+ NV+      +Y+G  YYQDS++VT+KG EIE  KI
Sbjct: 722 IIDLAHNDFEGDLPELYLRSLKAIMNVNEGNMTRKYMGNNYYQDSIMVTIKGLEIEFVKI 781

Query: 758 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSN 817
           L  FTTID SSN F GEI + IG L+SLR LNLSHN+  G IPS LGNL  LESLDLSSN
Sbjct: 782 LNTFTTIDLSSNKFQGEIPKSIGNLNSLRGLNLSHNNLGGHIPSPLGNLKSLESLDLSSN 841

Query: 818 NVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKCG 877
            + G+IP+ LTSLT L VLNLS N L G IP G QF TF  DSY  N GLCGFPL+KKC 
Sbjct: 842 KLIGRIPQELTSLTFLEVLNLSQNNLTGFIPRGNQFETFGNDSYNENSGLCGFPLSKKCT 901

Query: 878 NDEAPTTFHEEDEEAESSSSWFDW 901
            DE      E + E +     FDW
Sbjct: 902 ADETLEPSKEANTEFDGG---FDW 922

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147793123|emb|CAN75335.1| hypothetical protein VITISV_032542 [Vitis vinifera]

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/925 (48%), Positives = 563/925 (60%), Gaps = 77/925 (8%)

Query: 24  AKHCPREQSSALIQFKQLFSFDEDSSFVCQR----SYPKMISWKKDTNCCSWDGVTCDMA 79
            K CP  Q+ AL+  KQ FS +  SS  C      SYPK  SWKK ++CCSWDGVTCD  
Sbjct: 30  TKLCPHHQTLALLHLKQSFSINNSSSLDCHAVGVTSYPKTESWKKGSDCCSWDGVTCDWV 89

Query: 80  TGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSL 139
           TG+VI LDLSCSWL G I +NT+LF L H+Q LNL+ N+F  S IS GF RF +LTH +L
Sbjct: 90  TGHVIELDLSCSWLFGTIHSNTTLFLLPHIQRLNLAFNNFSGSSISVGFGRFSSLTHLNL 149

Query: 140 SDSNINCKIPYEISFLKMSTVVLD------------SLKNLSSSLTSL--------SLSD 179
           SDS  +  I  EIS L  + V LD               +L  +LT L        S+S 
Sbjct: 150 SDSGFSGLISPEISHLS-NLVSLDLSWNSDTEFAPHGFNSLVQNLTKLQKLHLGGISISS 208

Query: 180 -------------------CILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPI 220
                              C L G FP +  HLP  +++ L +N  L+G FP  N  + +
Sbjct: 209 VFPNSLLNRSSLISLHLSSCGLHGRFPDHDIHLPKLEVLNLWRNDDLSGNFPRFNENNSL 268

Query: 221 EYLDVSETSFS-ELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSG 279
             L +   +FS ELP SIGNLK L  L L   +F G +PASL NLTQ+T L+L  N+FSG
Sbjct: 269 TELYLLSKNFSGELPASIGNLKSLQTLDLSNCEFSGSIPASLENLTQITSLNLNGNHFSG 328

Query: 280 HIPSSLSNLVQLTYLDLSSNSFFGEIP-DIFNLTQVSFFDLSNNQLAGPIPSHGSRL--Q 336
            IP+  +NL  L  + LS+N F G+ P  I NLT + + D S NQL G IPSH +     
Sbjct: 329 KIPNIFNNLRNLISIGLSNNHFSGQFPPSIGNLTNLYYLDFSYNQLEGVIPSHVNEFLFS 388

Query: 337 NLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQG 396
           +L  + L  N F+G IPSWL++L  L  + L  N+L+GHI EF   SL+ I LS N L G
Sbjct: 389 SLSYVYLGYNLFNGIIPSWLYTLLSLVVLHLGHNKLTGHIGEFQFDSLEMIDLSMNELHG 448

Query: 397 SIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFP 456
            IPSSIF+LVNL  L L SNN SG+ E   F KL  L  LYLS+N LSL  +   +   P
Sbjct: 449 PIPSSIFKLVNLRSLYLSSNNLSGVLETSNFGKLRNLINLYLSNNMLSLTTSSNSNCILP 508

Query: 457 KFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNF 516
           K                       +  +DLS NKI G    W   +GKD+L Y+NLS+N 
Sbjct: 509 K-----------------------IESIDLSNNKISGV---WSWNMGKDTLWYLNLSYNS 542

Query: 517 ITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVL 576
           I+  + +PWKN+G LDL SNLLQG LP PP+S     + +N+ +G I   IC + ++ VL
Sbjct: 543 ISGFEMLPWKNVGILDLHSNLLQGALPTPPNSTFFFSVFHNKLSGGISPLICKVSSIRVL 602

Query: 577 DLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAI 636
           DLS+N L+G +P C+GNFS  LSVL+LR NR +G+IP +F + N +R+L+ N+N L G +
Sbjct: 603 DLSSNNLSGMLPHCLGNFSKDLSVLNLRRNRFHGTIPQSFLKGNVIRNLDFNDNRLEGLV 662

Query: 637 PQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKL 696
           P+SL+ C K+EVL++GN KIND FP+WLG LPELQVLVLRSN FHG +   + K  F  L
Sbjct: 663 PRSLIICRKLEVLNLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGCSKLKSPFMSL 722

Query: 697 RILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQK 756
           RI+DL+ N+F G LPE +L +L    NV  D    +Y+G  YY+DSV+VT+KG EIE  K
Sbjct: 723 RIIDLAHNDFEGDLPEMYLRSLKVTMNVDEDNMTRKYMGGNYYEDSVMVTIKGLEIEFVK 782

Query: 757 ILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSS 816
           IL  F TID SSN F GEI Q IG L+SLR LNLSHN+ TG IPSS GNL  LESLDLSS
Sbjct: 783 ILNAFATIDLSSNKFQGEIPQSIGNLNSLRGLNLSHNNLTGHIPSSFGNLKLLESLDLSS 842

Query: 817 NNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKC 876
           N + G IP+ LTSL  L VLNLS N L G IP G QF+TF  DSY GN  LCGFPL+KKC
Sbjct: 843 NKLIGSIPQQLTSLIFLEVLNLSQNHLTGFIPKGNQFDTFGNDSYNGNSELCGFPLSKKC 902

Query: 877 GNDEAPTTFHEEDEEAESSSSWFDW 901
             DE P    EED E E+    FDW
Sbjct: 903 IADETPEPSKEEDAEFENK---FDW 924

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493546|ref|XP_002267585.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/929 (48%), Positives = 564/929 (60%), Gaps = 82/929 (8%)

Query: 24  AKHCPREQSSALIQFKQLFSFDEDSSFVCQRS----YPKMISWKKDTNCCSWDGVTCDMA 79
            K CP  Q+ AL+ FKQ FS D  SS+ C       YPK  SWKK ++CCSWDGVTCD  
Sbjct: 31  TKLCPHHQAIALLHFKQSFSIDNSSSWYCDYYDVTFYPKTESWKKGSDCCSWDGVTCDWV 90

Query: 80  TGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSL 139
           TG+VI LDLSCSWL G I +NT+LFHL HLQ LNL+ N+F  S IS+GF RF +LTH +L
Sbjct: 91  TGHVIELDLSCSWLFGTIHSNTTLFHLPHLQRLNLAFNNFRGSSISAGFGRFSSLTHLNL 150

Query: 140 SDSNINCKIPYEISFL--------------KMSTVVLDSL-KNLS--------------- 169
            DS  +  I  EIS L              + +    DSL +NL+               
Sbjct: 151 CDSEFSGPISPEISHLSNLVSLDLSWNIDTEFAPHGFDSLVQNLTKLQKLHLGGISISSI 210

Query: 170 --------SSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIE 221
                   +SL SL L D  L G FP +  HLP  +++ L  N  L+G FP  +  + + 
Sbjct: 211 FPKFLLNWASLVSLDLLDGALHGRFPDHDIHLPKLEVLDLRWNNGLSGTFPQFSENNSLT 270

Query: 222 YLDVSETSFS-ELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGH 280
            L +S  +FS ELP SIGNLK L  L+L    F G +P+S+GNL  L +L +    FSG 
Sbjct: 271 ELYLSSKNFSGELPASIGNLKSLKILVLHNCGFSGSIPSSIGNLKSLMVLAMPGCEFSGS 330

Query: 281 IPSSLSNLVQLTYLDLSSNSFFGEIPDIFNL----TQVSFFDLSNNQLAGPIPSHGSRLQ 336
           IP+SL NL Q+  L L  N F G+I  + N       +    L++N  +G +P     L 
Sbjct: 331 IPASLGNLTQIIALHLDRNHFSGKISKVINFFNNFRNLISLGLASNNFSGQLPPSIGNLT 390

Query: 337 NL--VLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRL 394
           NL  +    N N F+GTIPSWL+++P L  + LS N+L+GHI EF   SL+ I LS N L
Sbjct: 391 NLQDLYFSDNFNMFNGTIPSWLYTMPSLVQLDLSHNKLTGHIGEFQFDSLEYIDLSMNEL 450

Query: 395 QGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSP 454
            GSIP SIF+L+NL  L L SNNFSG+ E   F KL  L  L LS+N LSL  +    S 
Sbjct: 451 HGSIPGSIFKLINLRYLFLSSNNFSGVLETSNFGKLRNLTSLDLSNNMLSLTTSDDSKSM 510

Query: 455 FPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSH 514
            P                        +  LDLS N I G I SW   +GK++L Y+NLS+
Sbjct: 511 LPY-----------------------IESLDLSNNNISG-IWSW--NMGKNTLQYLNLSY 544

Query: 515 NFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALD 574
           N I+  + +PWKNL  LDL SNLLQGPLP PP+S     +S+N+ +GEI+   C   ++ 
Sbjct: 545 NLISGFEMLPWKNLYILDLHSNLLQGPLPTPPNSTFFFSVSHNKLSGEILSLFCKASSMR 604

Query: 575 VLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGG 634
           +LDLSNN L+G +P C+GNFS  LSVL+L  NR +G IP TF + N +R+L+ N N+L G
Sbjct: 605 ILDLSNNNLSGMLPLCLGNFSKYLSVLNLGRNRFHGIIPQTFLKGNAIRNLDFNGNQLEG 664

Query: 635 AIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFP 694
            +P+SL+ C K+EVLD+GN KIND FP+WLG LPELQVLVLRSN FHG +   + K  F 
Sbjct: 665 LLPRSLIICRKLEVLDLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGCSKIKSPFM 724

Query: 695 KLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKL--RYLGEEYYQDSVVVTLKGTEI 752
            LRI+DL+ N+F G LPE +L +L A  NV  DEG +  +Y+G+ YYQDSV+VT+KG EI
Sbjct: 725 SLRIIDLAYNDFEGDLPEMYLRSLKATMNV--DEGNMTRKYMGDSYYQDSVMVTIKGLEI 782

Query: 753 EMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESL 812
           E  KIL  FTTID SSN F GEI + IG L+SLR LNLSHN   G IPSS  NL  LESL
Sbjct: 783 EFVKILNTFTTIDLSSNKFQGEIPKSIGNLNSLRGLNLSHNSLAGHIPSSFKNLKLLESL 842

Query: 813 DLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPL 872
           DLSSN + G IP+ LTSLT L VLNLS N L G IP G QF+TF  DSY  N GLCGFPL
Sbjct: 843 DLSSNKLIGSIPQELTSLTFLEVLNLSENHLTGFIPRGNQFDTFGNDSYSENSGLCGFPL 902

Query: 873 TKKCGNDEAPTTFHEEDEEAESSSSWFDW 901
           +KKC  DEA  +  E DEE +     FDW
Sbjct: 903 SKKCITDEASESSKEADEEFDGG---FDW 928

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493544|ref|XP_002267509.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/925 (48%), Positives = 566/925 (61%), Gaps = 79/925 (8%)

Query: 24  AKHCPREQSSALIQFKQLFSFDEDSSFVCQ----RSYPKMISWKKDTNCCSWDGVTCDMA 79
            K CP +Q+ AL+  KQ FS D  SS+ C      SYPK  SWKK ++CCSWDGVTCD  
Sbjct: 29  TKLCPHQQALALLHLKQSFSIDNSSSWDCDSNGITSYPKTESWKKGSDCCSWDGVTCDWV 88

Query: 80  TGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSL 139
           TG++I LDLSCSWL G I +N++LF   HL+ LNL+ NDF  S +S GF RF +LTH +L
Sbjct: 89  TGHIIGLDLSCSWLFGIIHSNSTLFLFPHLRRLNLASNDFSGSSVSVGFGRFSSLTHLNL 148

Query: 140 SDSNINCKIPYEISFLK---------------------------------------MSTV 160
           SDS  +  I  EIS L                                        +S+V
Sbjct: 149 SDSGFSGLISSEISHLSNLVSLDLSWNSDAEFAPHGFNSLVQNLTKLQKLHLRGISISSV 208

Query: 161 VLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPI 220
             DSL N  SSL SL LS C L G FP +  H P  +++ L  N  L+G FP  +  + +
Sbjct: 209 FPDSLLN-RSSLISLDLSSCGLHGRFPDHDIHFPKLEVLDLQGNNDLSGNFPRFSENNSL 267

Query: 221 EYLDVSETSFS-ELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSG 279
             L +S  +FS ELP SIGNLK L  L +   +F G +PASL NLTQ+T L+L  N FSG
Sbjct: 268 MELYLSSKNFSGELPASIGNLKSLQTLYISNCEFSGSIPASLENLTQITSLNLDENLFSG 327

Query: 280 HIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNL 338
            IP+  SNL  L  L L  N+F G++P  I NLT +   +L +NQL G IPS  +   +L
Sbjct: 328 KIPNVFSNLRNLISLHLHGNNFSGQLPSSIGNLTNLQGLNLYDNQLEGVIPSFVNGFLSL 387

Query: 339 VLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSI 398
             + L  N F+G IPSWL++LP L  + L  N+L+GHI EF S SL+ I L  N+L G I
Sbjct: 388 SYVDLGYNLFNGIIPSWLYALPSLVVLYLDHNKLTGHIGEFQSDSLELICLKMNKLHGPI 447

Query: 399 PSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKF 458
           PSSIF+LVNL  L L SNN SG+ E   F KL  L  L LS+N LS   +   +S  P  
Sbjct: 448 PSSIFKLVNLRYLHLSSNNLSGVLETSNFGKLRNLTSLDLSNNMLSSITSSNSNSILP-- 505

Query: 459 SYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFIT 518
                                 +  LD S N I G    W   +GK++L Y+NLS+N I+
Sbjct: 506 ---------------------SIQRLDFSNNNISG---VWSWNMGKNTLQYLNLSYNSIS 541

Query: 519 KMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDL 578
             + +PW+NL  LDL SNLLQGPLP  P+S     +S+N+ +GEI   IC   ++ + DL
Sbjct: 542 GFEMLPWENLYTLDLHSNLLQGPLPTLPNSTFFFSVSHNKLSGEISSLICKASSMRIFDL 601

Query: 579 SNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQ 638
           SNN L+G +P C+GNFS  L VL+LR N+ +G IP TF + N +R+L+ N+N+L G +P+
Sbjct: 602 SNNNLSGVLPHCLGNFSKDLFVLNLRRNQFHGIIPQTFLKGNAIRNLDFNDNQLEGPVPR 661

Query: 639 SLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRI 698
           SL+ C K+EVLD+GN KIND FP+WLG LPELQVLVLRSN FHG +   + K  F  LRI
Sbjct: 662 SLIICRKLEVLDLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGRSKIKSPFMSLRI 721

Query: 699 LDLSINNFSGYLPERFLENLNAMRNVSADEGKL--RYLGEEYYQDSVVVTLKGTEIEMQK 756
           +DL+ N+F G LPE +L +L A+ N+  DEG +  +Y+GEEYYQDS+VVT+K  EIE  K
Sbjct: 722 IDLAHNDFEGDLPEMYLRSLKAIMNI--DEGNMTRKYMGEEYYQDSIVVTIKRLEIEFVK 779

Query: 757 ILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSS 816
           IL  FTTID SSN F GEI + IG L+SLR LNLSHN+  G IPSS GNL  LESLDLSS
Sbjct: 780 ILNTFTTIDLSSNKFQGEIPKSIGNLNSLRGLNLSHNNLAGHIPSSFGNLKLLESLDLSS 839

Query: 817 NNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKC 876
           N + G+IP+ LTSLT L VLNLS N L G IP G QF+TF  DSY  N GLCGFPL+KKC
Sbjct: 840 NKLIGRIPQELTSLTFLEVLNLSQNHLTGFIPQGNQFDTFGNDSYNENSGLCGFPLSKKC 899

Query: 877 GNDEAPTTFHEEDEEAESSSSWFDW 901
             DE P +  E D E +     FDW
Sbjct: 900 IIDETPESSKETDAEFDGG---FDW 921

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493539|ref|XP_002267388.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/949 (47%), Positives = 572/949 (60%), Gaps = 103/949 (10%)

Query: 24  AKHCPREQSSALIQFKQLFSFDEDSSFVCQ----RSYPKMISWKKDTNCCSWDGVTCDMA 79
            K CP +Q+ AL+  KQ FS D  SS+ C      SYPK  SWKK ++CCSWDGVTCD  
Sbjct: 28  TKLCPHQQALALLHLKQSFSIDNSSSWDCDSNGITSYPKTESWKKGSDCCSWDGVTCDWV 87

Query: 80  TGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSL 139
           TG++I LDLSCS L G I +NT+LF LLHLQ LNL+ N+F+ S IS+GF RF +LTHF+L
Sbjct: 88  TGHIIGLDLSCSRLFGTIHSNTTLFLLLHLQRLNLAFNNFNGSSISAGFGRFSSLTHFNL 147

Query: 140 SDSNINCKIPYEISFLK---------------------------------------MSTV 160
           S S  +  I  EIS L                                        +S+V
Sbjct: 148 SYSGFSGLIAPEISHLSTLVSLDLSENYGAEFAPHGFNSLVQNLTKLQKLHLRGISISSV 207

Query: 161 VLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPI 220
             +SL N  SSL S+ LS C L G FP +  HLP  +++ L +N  L+G FP  +  + +
Sbjct: 208 FPNSLLN-RSSLISIDLSGCGLHGRFPDHDIHLPKLEVLDLWRNDDLSGNFPRFSENNSL 266

Query: 221 EYLDVSETSFS-ELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSG 279
             LD+S T+ S ELP SIGNLK L  L L   +F G +  S+GNL  L  L L    FSG
Sbjct: 267 MELDLSFTNLSGELPASIGNLKSLQTLDLSGCEFSGFIHTSIGNLKSLQTLDLSGCEFSG 326

Query: 280 HIPSSLSNLVQLTYLDLSSNSFFGEIP-DIFNLTQVSFFDLSNNQLAGPIPSHGSRLQ-- 336
            IP+S+ NL  L  LDLS   F G IP  I NL  +   DLSN +  G IP+    L+  
Sbjct: 327 FIPTSIGNLKSLQTLDLSDCEFSGSIPTSIGNLKSLQTLDLSNCEFLGSIPTSIGNLKSL 386

Query: 337 ----------------------NLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSG 374
                                 NL  +R +NN F+GTIPS L++LP L  + LS  +L+G
Sbjct: 387 RSLYLFSNNFSGQLPPSIGNLTNLQNLRFSNNLFNGTIPSQLYTLPSLVNLDLSHKKLTG 446

Query: 375 HIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLK 434
           HI EF   SL+ I LS N L G IPSSIF+L NL  L L SNN SG+ E   F KL  L 
Sbjct: 447 HIGEFQFDSLEYIDLSMNELHGPIPSSIFKLANLEFLYLYSNNLSGVLETSNFGKLRNLT 506

Query: 435 YLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQ 494
            L LS+N LSL  +   +S  P                        +  LDLS NKI G 
Sbjct: 507 LLVLSNNMLSLITSGNSNSILPY-----------------------IERLDLSNNKISG- 542

Query: 495 IPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLI 554
           I SW   +GKD+L Y+NLS+N I+  + +PWKN+  LDL SNLLQGPLP+PP+S     +
Sbjct: 543 IWSW--NMGKDTLLYLNLSYNIISGFEMLPWKNMHILDLHSNLLQGPLPIPPNSTFFFSV 600

Query: 555 SNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPG 614
           S+N+ +GEI   IC + ++ VLDLS+N L+G +P C+GNFS  LSVL+LR NR +G+IP 
Sbjct: 601 SHNKLSGEISPLICKVSSMGVLDLSSNNLSGMLPHCLGNFSKDLSVLNLRRNRFHGTIPQ 660

Query: 615 TFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLV 674
           TF + N +R+L+ N+N+L G +P+SL+   K+EVLD+GN KIND FP+WL  LPELQVLV
Sbjct: 661 TFLKGNAIRNLDFNDNQLEGLVPRSLIIYRKLEVLDLGNNKINDTFPHWLRTLPELQVLV 720

Query: 675 LRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKL--R 732
           LRSN FHG +   + K  F  LRI+DL+ N+F G LPE +L +L A+ N+  DEG +  +
Sbjct: 721 LRSNSFHGHIGFSKIKSPFMSLRIIDLAHNDFEGDLPEMYLRSLKAIMNI--DEGNMARK 778

Query: 733 YLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSH 792
           Y+GE YYQDS+ VT KG ++E+ KIL  FTT+D SSN F GEI + IG L+SLR LNLSH
Sbjct: 779 YMGEYYYQDSITVTTKGLDVELVKILNTFTTVDLSSNKFQGEIPKSIGNLNSLRGLNLSH 838

Query: 793 NHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQ 852
           N+ TG IPSS GNL  LESLDLSSN + G IP+ LTSLT L VLNLS N L G IP G Q
Sbjct: 839 NNLTGLIPSSFGNLKSLESLDLSSNELIGSIPQQLTSLTFLEVLNLSQNHLTGFIPRGNQ 898

Query: 853 FNTFQEDSYIGNLGLCGFPLTKKCGNDEAPTTFHEEDEEAESSSSWFDW 901
           F+TF  DSY  N GLCGFPL+KKC  DE P    E D + +     FDW
Sbjct: 899 FDTFGNDSYNENSGLCGFPLSKKCIADETPEPSKEADAKFDGG---FDW 944

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493403|ref|XP_003616990.1| Receptor-like protein kinase [Medicago truncatula] gi|355518325|gb|AES99948.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/953 (43%), Positives = 555/953 (58%), Gaps = 101/953 (10%)

Query: 27  CPREQSSALIQFKQLFSFDEDSSF------VCQRSYPKMISWKKDTNCCSWDGVTCDMAT 80
           C +  +SAL+ FK  FSF+  S         C     K+ SWK +T+CC WDGVTCD  +
Sbjct: 26  CNQHDTSALLHFKNSFSFNTSSKSDIHFWPRCSTFSFKIESWKNNTDCCGWDGVTCDSMS 85

Query: 81  GNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLS 140
            +VI LDLSCS L+G +  N+++F L HLQ LNL+ N+F  S +        NLTH +LS
Sbjct: 86  DHVIGLDLSCSNLNGELHPNSTIFQLRHLQQLNLAFNNFSGSLLHVSIDDLVNLTHLNLS 145

Query: 141 DSNINCKIPYEISFL------------------KMSTVVLDSLKNLSSSLTSLSLSDCI- 181
             ++   IP  IS L                  K++ +    L + +++L  LSL  C+ 
Sbjct: 146 HCSLGGNIPSTISHLSKLVSLDLSSYYDWHMGLKLNPLTWKKLIHNATNLRELSLG-CVN 204

Query: 182 ----------------------------LQGNFPINIFHLPNPQMIRLSQNPSLAGKFPA 213
                                       LQGN   +I  LPN Q + LS N  L+ + P 
Sbjct: 205 MSSIRASSLSMLKNLSSSLVSLGLGETGLQGNLSSDILSLPNLQTLDLSSNKYLSSQLPK 264

Query: 214 NNWTSPIEYLDVSETSFS-ELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHL 272
           +NW++P+ YLD+S T FS E+P SIG LK L +L L    F G +P SLGNLTQLT L  
Sbjct: 265 SNWSTPLRYLDLSRTPFSGEIPYSIGQLKSLTQLDLEMCNFDGLIPPSLGNLTQLTSLFF 324

Query: 273 MHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF----------------------- 309
             NN  G IPSSLS L  LTY DL  N+F G IP++F                       
Sbjct: 325 QSNNLKGEIPSSLSKLTHLTYFDLQYNNFSGSIPNVFENLIKLEYLGFSGNNLSGLVPSS 384

Query: 310 --NLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRL 367
             NLT++S  DL+NN+L GPIP+  ++   L L+ L NN  +G IP W +SL  L  + L
Sbjct: 385 LFNLTELSHLDLTNNKLVGPIPTEITKHSKLYLLALANNMLNGAIPPWCYSLTSLVELDL 444

Query: 368 SDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMF 427
           +DNQL+G I EF + SL  ++LSNN ++G  P+SI++L NL DL L S N SG+ + + F
Sbjct: 445 NDNQLTGSIGEFSTYSLIYLFLSNNNIKGDFPNSIYKLQNLFDLGLSSTNLSGVVDFHQF 504

Query: 428 AKLIKLKYLYLSHNSL-SLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDL 486
           +   KL +L LSHNSL S+    ++DS  P    L LS+ NIS+FP+FL     L  LDL
Sbjct: 505 SNCKKLFFLDLSHNSLLSINIESRVDSILPNLGILYLSSSNISSFPKFLAQNQNLVELDL 564

Query: 487 SENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPP 546
           S+NKI G++P W  E          L H          W+++ ++DL  N LQG LP+P 
Sbjct: 565 SKNKIQGKVPKWFHE---------KLLHT---------WRDIQHVDLSFNKLQGDLPIPR 606

Query: 547 SSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNN 606
             +   L+SNN FTG I  S+C+  +L+VL+L++N L G IP+C+G F PSLSVLD++ N
Sbjct: 607 YGIYYFLLSNNNFTGNIDFSLCNASSLNVLNLAHNNLTGMIPQCLGTF-PSLSVLDMQMN 665

Query: 607 RLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGN 666
            L G IP TF++ N   ++ LN N L G +PQSL +CTK+EVLD+G+  + D FP WL  
Sbjct: 666 NLYGHIPRTFSKGNAFETIKLNGNRLEGPLPQSLAHCTKLEVLDLGDNNVEDTFPNWLET 725

Query: 667 LPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSA 726
           L ELQVL LRSNK HG++     K  FPKLRI D+S NNF G LP   ++N   M NV+ 
Sbjct: 726 LQELQVLSLRSNKLHGAITCSSTKHPFPKLRIFDVSNNNFIGPLPTSCIKNFQGMMNVND 785

Query: 727 DEGKLRYLGEE-YYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSL 785
           +   L+Y+G+  YY DSVVV +KG  +E+ KILT FTTID S+N F+GEI QV G+L SL
Sbjct: 786 NNTGLQYMGKSNYYNDSVVVVVKGLSMELTKILTTFTTIDLSNNMFEGEIPQVFGELISL 845

Query: 786 RLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDG 845
           + LNLS+N  TG IP SL +L  LE LDLS N + G+IP  LT+L  LS LNLS N L+G
Sbjct: 846 KGLNLSNNKITGTIPYSLSSLRNLEWLDLSRNQLKGEIPLALTNLNFLSFLNLSQNHLEG 905

Query: 846 PIPHGPQFNTFQEDSYIGNLGLCGFPLTKKCGNDEAPTTFHEEDEEAESSSSW 898
            IP G QF TF  DS+ GN  LCGFPL+K C  DE  + +   ++E ES   W
Sbjct: 906 IIPTGQQFGTFGNDSFEGNTMLCGFPLSKSCKTDEDWSPYSTSNDEEESGFGW 958

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493511|ref|XP_003617044.1| Receptor-like protein kinase [Medicago truncatula] gi|355518379|gb|AET00003.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/954 (44%), Positives = 564/954 (59%), Gaps = 101/954 (10%)

Query: 27  CPREQSSALIQFKQLFSFDEDSS----FV------CQRSYPKMISWKKDTNCCSWDGVTC 76
           C +  +SAL+QFK  FS +  S     F+      C     K  SW+  T+CC WDGVTC
Sbjct: 28  CNKHDNSALLQFKNSFSVNTSSKPDPFFISYFGPSCSSFSFKTESWENSTDCCEWDGVTC 87

Query: 77  DMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTH 136
           D  + +VI LDLSC+ L G +  N+++F L HLQ LNL+ NDF  S +  G      LTH
Sbjct: 88  DTMSDHVIGLDLSCNNLKGELHPNSTIFQLKHLQQLNLAFNDFSLSSMPIGVGDLVKLTH 147

Query: 137 FSLSDSNINCKIPYEISFL----------------KMSTVVLDSLKNLSSSLTSLSLS-- 178
            +LS   +N  IP  IS L                K+++ +   L + +++L  L L+  
Sbjct: 148 LNLSKCYLNGNIPSTISHLSKLVSLDLSRNWHVGLKLNSFIWKKLIHNATNLRDLHLNGV 207

Query: 179 --------------------------DCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFP 212
                                     + +LQGN   +I  LPN Q + LS N +L+G+ P
Sbjct: 208 NMSSIGESSLSMLKNLSSSLVSLSLRNTVLQGNISSDILSLPNLQRLDLSFNHNLSGQLP 267

Query: 213 ANNWTSPIEYLDVSETSFS-ELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLL- 270
            +NW++P+ YLD+S ++FS E+P SIG LK L +L L Y  F G VP SL NLTQLT L 
Sbjct: 268 KSNWSTPLRYLDLSSSAFSGEIPYSIGQLKSLTQLDLSYCNFDGIVPLSLWNLTQLTYLD 327

Query: 271 ------------------HLMH-----NNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD 307
                             HL+H     NNFSG IP+   NL++L YL LSSN+  G++P 
Sbjct: 328 LSQNKLNGEISPLLSNLKHLIHCDLAENNFSGSIPNVYGNLIKLEYLALSSNNLTGQVPS 387

Query: 308 -IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVR 366
            +F+L  +S+  LS+N+L GPIP   ++   L ++ L+ N  +GTIP W +SLP L  + 
Sbjct: 388 SLFHLPHLSYLYLSSNKLVGPIPIEITKRSKLSIVDLSFNMLNGTIPHWCYSLPSLLELG 447

Query: 367 LSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYM 426
           LSDN L+G I EF + SLQ + LSNN L+G  P+SIF+L NLT+L L S N SG+ + + 
Sbjct: 448 LSDNHLTGFIGEFSTYSLQYLDLSNNNLRGHFPNSIFQLQNLTELILSSTNLSGVVDFHQ 507

Query: 427 FAKLIKLKYLYLSHNS-LSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLD 485
           F+KL KL  L LSHN+ L++      DS  P    L LS+ NI++FP+FL     L  LD
Sbjct: 508 FSKLNKLNSLVLSHNTFLAINTDSSADSILPNLFSLDLSSANINSFPKFLAQLPNLQSLD 567

Query: 486 LSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVP 545
           LS N I G+IP W  +   +S                  WK++  +DL  N LQG LP+P
Sbjct: 568 LSNNNIHGKIPKWFHKKLLNS------------------WKDIWSVDLSFNKLQGDLPIP 609

Query: 546 PSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRN 605
           PS ++   +SNN FTG I  + C+  +L +LDL++N L G IP+C+G  + SL VLD++ 
Sbjct: 610 PSGIQYFSLSNNNFTGYISSTFCNASSLYMLDLAHNNLTGMIPQCLGTLN-SLHVLDMQM 668

Query: 606 NRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLG 665
           N L GSIP TF + N   ++ LN N+L G +PQSL NC+ +EVLD+G+  + D FP WL 
Sbjct: 669 NNLYGSIPRTFTKGNAFETIKLNGNQLEGPLPQSLANCSYLEVLDLGDNNVEDTFPDWLE 728

Query: 666 NLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVS 725
            LPELQV+ LRSN  HG++     K +FPKLRI D+S NNFSG LP   ++N   M NVS
Sbjct: 729 TLPELQVISLRSNNLHGAITCSSTKHTFPKLRIFDVSNNNFSGPLPTSCIKNFQGMMNVS 788

Query: 726 ADEGKLRYLGEEYY-QDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHS 784
            D+  L+Y+G+ YY  DSVVVT+KG  +E+ +ILT FTTID S+N F+GEI QVIG+L+S
Sbjct: 789 DDQIGLQYMGDSYYYNDSVVVTVKGFFMELTRILTAFTTIDLSNNMFEGEIPQVIGELNS 848

Query: 785 LRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLD 844
           L+ LNLS+N  TG IP SL +L  LE LDLS N + G+IP  LT+L  LSVLNLS N L+
Sbjct: 849 LKGLNLSNNGITGSIPQSLSHLRNLEWLDLSCNQLKGEIPVALTNLNFLSVLNLSQNHLE 908

Query: 845 GPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKCGNDEAPTTFHEEDEEAESSSSW 898
           G IP G QFNTF  DS+ GN  LCGFPL+K C N+E        ++E ES   W
Sbjct: 909 GIIPKGQQFNTFGNDSFEGNTMLCGFPLSKSCKNEEDRPPHSTSEDEEESGFGW 962

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	901
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.915	0.862	0.343	2.7e-116
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.892	0.899	0.345	6.8e-111
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.763	0.692	0.381	4.6e-105
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.745	0.659	0.376	1.2e-104
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.658	0.733	0.378	2.9e-99
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.684	0.832	0.375	4.5e-98
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.742	0.764	0.362	5.2e-97
TAIR|locus:2046600	800	RLP26 "receptor like protein 2	0.653	0.736	0.373	6.9e-96
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.821	0.784	0.337	1e-93
TAIR|locus:2087253	884	RLP39 "AT3G24900" [Arabidopsis	0.759	0.773	0.350	7e-93

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 1146 (408.5 bits), Expect = 2.7e-116, P = 2.7e-116
 Identities = 305/888 (34%), Positives = 451/888 (50%)

Query:    27 CPREQSSALIQFKQLFSFDEDSSFVCQ----RSYPKMISWKKDTNCCSWDGVTCDMATGN 82
             C  EQ  AL+ FK  F   + S   C+     S  K  SW  +++CC+W+GVTC+  +G 
Sbjct:    37 CRPEQRDALLAFKNEFEIGKPSPDHCKIYGIESPRKTDSWGNNSDCCNWEGVTCNAKSGE 96

Query:    83 VISLDLSCSWLHGNIPTNXXXXXXXXXXXXXXXXXDFDYSEISSGFSRFRNLTHFSLSDS 142
             VI LDLSCS LHG   +N                 DF   +I+S      +LT+  LS +
Sbjct:    97 VIELDLSCSSLHGRFHSNSSIRNLHFLTTLDLSFNDFK-GQITSSIENLSHLTYLDLSSN 155

Query:   143 NINCKIPYEISFLKMSTVVXXXXXXXXXXXXXXXXXDCILQGNFPINIFHLPNPQMIRLS 202
             + + +I   I  L   T +                 D    G  P +I +L +   + LS
Sbjct:   156 HFSGQILNSIGNLSRLTYLNLF--------------DNQFSGQAPSSICNLSHLTFLDLS 201

Query:   203 QNPSLAGKFPAN-NWTSPIEYLDVSETSFS-ELPDSIGNLKLLGRLMLGYSQFVGPVPAS 260
              N    G+FP++    S +  L +    FS ++P SIGNL  L  L L  + F G +P+ 
Sbjct:   202 YN-RFFGQFPSSIGGLSHLTTLSLFSNKFSGQIPSSIGNLSNLTTLDLSNNNFSGQIPSF 260

Query:   261 XXXXXXXXXXXXXXXXFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDL 319
                             F G IPSS  NL QLT L +  N   G  P++  NLT +S   L
Sbjct:   261 IGNLSQLTFLGLFSNNFVGEIPSSFGNLNQLTRLYVDDNKLSGNFPNVLLNLTGLSLLSL 320

Query:   320 SNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF 379
             SNN+  G +P + + L NL+    ++N+F+GT PS+LF++P L Y+RL+ NQL G ++  
Sbjct:   321 SNNKFTGTLPPNITSLSNLMDFDASDNAFTGTFPSFLFTIPSLTYIRLNGNQLKGTLEFG 380

Query:   380 PSKSLQNIY---LSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYL 436
                S  N+Y   + NN   G IPSSI +LV L  L +   N  G  +  +F+ L  L  L
Sbjct:   381 NISSPSNLYELDIGNNNFIGPIPSSISKLVKLFRLDISHLNTQGPVDFSIFSHLKSLLDL 440

Query:   437 YLSHNSLSLGNTFKID-----SPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKI 491
              +SH    L  T +ID     S F +   L LS  ++SA  +     D  S L +    +
Sbjct:   441 NISH----LNTTTRIDLNYFLSYFKRLLLLDLSGNHVSATNKS-SVSDPPSQL-IQSLYL 494

Query:   492 DG----QIPSWISEIGKDSLSYVNLSHNFITKMK-QIP---WKN--LGYLDLRSNLLQGX 541
              G    + P ++    +  L ++++S+N   K+K Q+P   W+   L Y++L +N L G 
Sbjct:   495 SGCGITEFPEFVRT--QHELGFLDISNN---KIKGQVPDWLWRLPILYYVNLSNNTLIGF 549

Query:   542 XXXXXXXXXXXXI--SNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLS 599
                         +  SNN F G+I   IC + +L+ LDLS+N  NG+IP C+G+   +LS
Sbjct:   550 QRPSKPEPSLLYLLGSNNNFIGKIPSFICGLRSLNTLDLSDNNFNGSIPRCMGHLKSTLS 609

Query:   600 VLDLRNNRLNGSIPGTFAXXXXXXXXXXXXXXXGGAIPQSLVNCTKVEVLDIGNIKINDA 659
             VL+LR N L+G +P                    G +P+SL   + +EVL++ + +IND 
Sbjct:   610 VLNLRQNHLSGGLPKQIFEILRSLDVGHNQLV--GKLPRSLSFFSTLEVLNVESNRINDT 667

Query:   660 FPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLN 719
             FP+WL +LP+LQVLVLRSN FHG + E     +FP+LRI+D+S N F+G LP  +    +
Sbjct:   668 FPFWLSSLPKLQVLVLRSNAFHGPIHE----ATFPELRIIDISHNRFNGTLPTEYFVKWS 723

Query:   720 AMRNV--SADEGKLRYLGEE-YYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEIS 776
             AM ++  + D+   +Y+G   YYQDS+V+  KG  +E+ +ILT++T +DFS N F+GEI 
Sbjct:   724 AMSSLGKNEDQSNEKYMGSGLYYQDSMVLMNKGVAMELVRILTIYTAVDFSGNRFEGEIP 783

Query:   777 QVIGKXXXXXXXXXXXXXFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPXXXXXXXXXX 836
             + IG              F+G +PSS+GNL  LESLD+S N + G+IP+           
Sbjct:   784 KSIGLLKELLVLSLSNNAFSGHMPSSMGNLTALESLDVSKNKLTGEIPQELGDLSFLAYM 843

Query:   837 XXXHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKCGNDEAPTT 884
                HN+L G +P G QF T    ++  NLGL G  L + C +   P +
Sbjct:   844 NFSHNQLAGLVPGGQQFLTQNCSAFEDNLGLFGSSLEEVCRDIHTPAS 891

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 1095 (390.5 bits), Expect = 6.8e-111, P = 6.8e-111
 Identities = 293/849 (34%), Positives = 430/849 (50%)

Query:    55 SYPKMISWKKDTNCCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNXXXXXXXXXXXXXX 114
             S+ K  SW  +++CC+W+GVTC+  +G VI L+LSCS LHG   +N              
Sbjct:     6 SHRKTESWGNNSDCCNWEGVTCNAKSGEVIELNLSCSSLHGRFHSNSSIRNLHFLTTLDR 65

Query:   115 XXXDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVXXXXXXXXXXXXX 174
                DF+  +I+S      +LT   LS +  + +I   I  L   T +             
Sbjct:    66 SHNDFE-GQITSSIENLSHLTSLDLSYNRFSGQILNSIGNLSRLTSLDLSFNQ------- 117

Query:   175 XXXXDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWT-SPIEYLDVSETSF-SE 232
                      G  P +I +L +   + LS N    G+ P++    S + +L +S   F  +
Sbjct:   118 -------FSGQIPSSIGNLSHLTFLGLSGN-RFFGQIPSSIGNLSHLTFLGLSGNRFFGQ 169

Query:   233 LPDSIGNLKLLGRLMLGYSQFVGPVPASXXXXXXXXXXXXXXXXFSGHIPSSLSNLVQLT 292
              P SIG L  L  L L Y+++ G +P+S                F G IPSS  NL QLT
Sbjct:   170 FPSSIGGLSNLTNLHLSYNKYSGQIPSSIGNLSQLIVLYLSVNNFYGEIPSSFGNLNQLT 229

Query:   293 YLDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGT 351
              LD+S N   G  P++  NLT +S   LSNN+  G +P + + L NL+    ++N+F+GT
Sbjct:   230 RLDVSFNKLGGNFPNVLLNLTGLSVVSLSNNKFTGTLPPNITSLSNLMAFYASDNAFTGT 289

Query:   352 IPSWLFSLPLLEYVRLSDNQLSGHID--EFPSKS-LQNIYLSNNRLQGSIPSSIFELVNL 408
              PS+LF +P L Y+ LS NQL G ++     S S LQ + + +N   G IPSSI +L+NL
Sbjct:   290 FPSFLFIIPSLTYLGLSGNQLKGTLEFGNISSPSNLQYLNIGSNNFIGPIPSSISKLINL 349

Query:   409 TDLQLDSNNFSGIAEPY-MFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACN 467
              +L +   N       + +F+ L  L  L LS+ + +  +   I   F     L LS   
Sbjct:   350 QELGISHLNTQCRPVDFSIFSHLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDLSGNL 409

Query:   468 ISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEI--GKDSLSYVNLSHNFITKMK-QIP 524
             +SA  +   + D  S   +    + G   +   EI   +  L ++++S+N   K+K Q+P
Sbjct:   410 VSATNKSSVSSDPPSQ-SIQSLYLSGCGITDFPEILRTQHELGFLDVSNN---KIKGQVP 465

Query:   525 -W----KNLGYLDLRSNLLQGXXXXXXXXXXXXXI--SNNQFTGEIIHSICDIIALDVLD 577
              W     NL YL+L +N   G             +  SNN FTG+I   IC++ +L  LD
Sbjct:   466 GWLWTLPNLFYLNLSNNTFIGFQRPTKPEPSMAYLLGSNNNFTGKIPSFICELRSLYTLD 525

Query:   578 LSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAXXXXXXXXXXXXXXXGGAIP 637
             LS+N  +G+IP C+ N   +LS L+LR N L+G  P                    G +P
Sbjct:   526 LSDNNFSGSIPRCMENLKSNLSELNLRQNNLSGGFPEHIFESLRSLDVGHNQLV--GKLP 583

Query:   638 QSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLR 697
             +SL   + +EVL++ + +IND FP+WL +L +LQVLVLRSN FHG + +      FPKLR
Sbjct:   584 RSLRFFSNLEVLNVESNRINDMFPFWLSSLQKLQVLVLRSNAFHGPINQ----ALFPKLR 639

Query:   698 ILDLSINNFSGYLPERFLENLNAMRNVSA--DEGKLRYLGEEYYQDSVVVTLKGTEIEMQ 755
             I+D+S N+F+G LP  +    + M ++    D   + YLG  YYQDS+V+  KG E E+ 
Sbjct:   640 IIDISHNHFNGSLPTEYFVEWSRMSSLGTYEDGSNVNYLGSGYYQDSMVLMNKGVESELV 699

Query:   756 KILTVFTTIDFSSNGFDGEISQVIGKXXXXXXXXXXXXXFTGQIPSSLGNLAKLESLDLS 815
             +ILT++T +DFS N F+GEI + IG              FTG IPSS+GNL  LESLD+S
Sbjct:   700 RILTIYTAVDFSGNKFEGEIPKSIGLLKELHVLNLSNNAFTGHIPSSIGNLTALESLDVS 759

Query:   816 SNNVAGKIPKPXXXXXXXXXXXXXHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKK 875
              N + G+IP+              HN+L G +P G QF T +  S+ GNLGL G  L + 
Sbjct:   760 QNKLYGEIPQEIGNLSLLSYMNFSHNQLTGLVPGGQQFLTQRCSSFEGNLGLFGSSLEEV 819

Query:   876 CGNDEAPTT 884
             C +   P +
Sbjct:   820 CRDIHTPAS 828

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 1040 (371.2 bits), Expect = 4.6e-105, P = 4.6e-105
 Identities = 272/713 (38%), Positives = 369/713 (51%)

Query:   187 PINIFHLPNPQMIRLSQNPSLAGKFPANNWTSP-IEYLDVSETSFSE--LPDSIGNLKLL 243
             PI   ++ + + + L +  +L G+FP +    P +E + +      E  LP+ + N  LL
Sbjct:   223 PIEFSYMWSLRSLTL-KGCNLLGRFPNSVLLIPNLESISLDHNLNLEGSLPNFLRNNSLL 281

Query:   244 GRLMLGYSQFVGPVPASXXXXXXXXXXXXXXXXFSGHIPSSLSNLVQLTYLDLSSNSFFG 303
              +L +  + F G +P S                FSG IPSSL +L  L+ L LS N+F G
Sbjct:   282 -KLSIYNTSFSGTIPNSISNLKHLTSLKLQQSAFSGRIPSSLRSLSHLSNLVLSENNFVG 340

Query:   304 EIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLL 362
             EIP  + NL Q++ FD+S+N L G  PS    L  L  I + +N F+G +P  +  L  L
Sbjct:   341 EIPSSVSNLKQLTLFDVSDNNLNGNFPSSLLNLNQLRYIDICSNHFTGFLPPTISQLSNL 400

Query:   363 EYVRLSDNQLSGHIDE--FPSKSLQNIYLSNNRLQGSIP-SSIFELVNLTDLQLDSNNFS 419
             E+    DN  +G I    F   SL  + LS N+L  +    +I  L NL  L LD+NNF 
Sbjct:   401 EFFSACDNSFTGSIPSSLFNISSLTTLGLSYNQLNDTTNIKNISLLHNLQRLLLDNNNFK 460

Query:   420 GI-AEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPK-FSYLSLSACNISAFPRFLRT 477
                 +  +F  L +L  L LS   LS  N    DS F     YL LS CNI  FP F+R 
Sbjct:   461 ASQVDLDVFLSLKRLVSLALSGIPLSTTNITS-DSEFSSHLEYLELSGCNIIEFPEFIRN 519

Query:   478 QDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHN----FITKMKQIPWKNLGYLDL 533
             Q  LS +DLS N I GQ+P+W+  + +  LS V+LS+N    F   +K +    +  LDL
Sbjct:   520 QRNLSSIDLSNNNIKGQVPNWLWRLPE--LSTVDLSNNSLIGFNGSLKALSGSKIVMLDL 577

Query:   534 RSNLLQGXXXXXXXXXXXXXISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGN 593
              SN  QG              S N FTG I  SIC +    +LDLSNN L+G IP C+  
Sbjct:   578 SSNAFQGPLFMPPRGIQYFLGSYNNFTGYIPPSICGLANPLILDLSNNNLHGLIPRCLEA 637

Query:   594 FSPSLSVLDLRNNRLNGSIPGTFAXXXXXXXXXXXXXXXGGAIPQSLVNCTKVEVLDIGN 653
                SLSVL+LRNN L+GS+P  F                 G +P SL  C+ +E+L++ +
Sbjct:   638 QMSSLSVLNLRNNSLDGSLPNIFMNAKVLSSLDVSHNTLEGKLPASLAGCSALEILNVES 697

Query:   654 IKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKE-SFPKLRILDLSINNFSGYLPE 712
               IND FP+WL +LP+LQVLVLRSN F G++   +     FP LRI D+S N+F G LP 
Sbjct:   698 NNINDTFPFWLNSLPKLQVLVLRSNNFRGTLHNVDGVWFGFPLLRITDVSHNDFVGTLPS 757

Query:   713 RFLENLNAMRNVSADEGKLRYLG--EEY-YQDSVVVTLKGTEIEMQKILTVFTTIDFSSN 769
              +  N  A   +S  E +L+Y+G  E+Y Y  S+V+  KG  +EMQ+ILT +T IDF+ N
Sbjct:   758 DYFMNWTA---ISKSETELQYIGDPEDYGYYTSLVLMNKGVSMEMQRILTKYTVIDFAGN 814

Query:   770 GFDGEISQVIGKXXXXXXXXXXXXXFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPXXX 829
                G+I + +G              FTG IPSSL NL  LESLD+S N + G+IP     
Sbjct:   815 KIQGKIPESVGILKELHVLNLSSNAFTGHIPSSLANLTNLESLDISQNKIGGEIPPELGT 874

Query:   830 XXXXXXXXXXHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKCGNDEAP 882
                       HN+L G IP G QF+     SY GN G+ G  L   CG+  AP
Sbjct:   875 LSSLEWINVSHNQLVGSIPQGTQFHRQNCSSYEGNPGIYGSSLKDVCGDIHAP 927

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 1036 (369.7 bits), Expect = 1.2e-104, P = 1.2e-104
 Identities = 264/702 (37%), Positives = 370/702 (52%)

Query:   206 SLAGKFPANNWTSP-IEYLDVSETSF--SELPDSIGNLKLLGRLMLGYSQFVGPVPASXX 262
             +L G+FP++    P ++ +D+         LP    N  LL +L + Y+ F G +P S  
Sbjct:   262 NLFGEFPSSILLIPNLQSIDLGNNPNLRGNLPVFHENNSLL-KLTILYTSFSGAIPDSIS 320

Query:   263 XXXXXXXXXXXXXXFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSN 321
                           FSG IP SL NL  L++L LSSN+  GEIP  I NL Q++ F +  
Sbjct:   321 SLKNLTSLTLSVSYFSGKIPFSLGNLSHLSHLSLSSNNLIGEIPSSIGNLNQLTNFYVGG 380

Query:   322 NQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS 381
             N+L+G +P+  S L  L  I L++N F+G++P  +  L  L++    DN   G I     
Sbjct:   381 NKLSGNLPATLSNLTKLNTISLSSNQFTGSLPPSISQLSKLKFFFADDNPFIGAILSPLL 440

Query:   382 K--SLQNIYLSNNRLQGSIP-SSIFELVNLTDLQLDSNNFSGIA--EPYMFAKLIKLKYL 436
             K  SL  I+LS N+L   +   +IF L NL    +   N++ +   +  +F+ L +L  L
Sbjct:   441 KIPSLTRIHLSYNQLNDLVGIENIFMLPNLETFYIYHYNYTKVRPLDLNVFSSLKQLGTL 500

Query:   437 YLSHNSLSLGNTFKIDSPFPK-FSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQI 495
             Y+S   +S  N   I S FP    YLSL +CNI+ FP F+R    L  LDLS NKI GQ+
Sbjct:   501 YISRIPISTTN---ITSDFPSNLEYLSLRSCNITDFPEFIRKGRNLQILDLSNNKIKGQV 557

Query:   496 PSWISEIGKDSLSYVNLSHN----FITKMKQIPWKNLGYLDLRSNLLQGXXXXXXXXXXX 551
             P W+  +   +L+ V+LS+N    F   +K  P   L  +DL SN  QG           
Sbjct:   558 PDWLWRM--PTLNSVDLSNNSLSGFHVSVKASPESQLTSVDLSSNAFQGPLFLPSKSLRY 615

Query:   552 XXISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGS 611
                SNN FTG+I  SIC + +L++LDLSNN LNG++P C+     SLS LDLRNN L+GS
Sbjct:   616 FSGSNNNFTGKIPRSICGLSSLEILDLSNNNLNGSLPWCLETLMSSLSDLDLRNNSLSGS 675

Query:   612 IPGTFAXXXXXXXXXXXXXXXGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQ 671
             +P  F                 G +P SL  C+ +EVL++G+ +IND FP+ L +L +LQ
Sbjct:   676 LPEIFMNATKLRSLDVSHNRMEGKLPGSLTGCSSLEVLNVGSNRINDMFPFELNSLQKLQ 735

Query:   672 VLVLRSNKFHGSVREFEPKE-SFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGK 730
             VLVL SNKFHG++   +     FP+L+I+D+S N+F G LP  +  N  AM +   +  +
Sbjct:   736 VLVLHSNKFHGTLHNVDGVWFGFPQLQIIDVSHNDFFGILPSDYFMNWTAMSSKKDNNIE 795

Query:   731 LRYL------GEEY-YQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKXX 783
               Y+      G    Y  S+V+  KG  +EM+++LT++T ID S N   G+I   IG   
Sbjct:   796 PEYIQNPSVYGSSLGYYTSLVLMSKGVSMEMERVLTIYTAIDLSGNQLHGKIPDSIGLLK 855

Query:   784 XXXXXXXXXXXFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPXXXXXXXXXXXXXHNRL 843
                        FTG IPSSL NL  LESLD+S NN++G+IP               HN+L
Sbjct:   856 ELRILNMSSNGFTGHIPSSLANLKNLESLDISQNNISGEIPPELGTLSSLAWINVSHNQL 915

Query:   844 DGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKCGN--DEAPT 883
              G IP G QF   +  SY GN GL G  L   CG+  +  PT
Sbjct:   916 VGSIPQGTQFQRQKCSSYEGNPGLNGPSLENVCGHIKESTPT 957

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 966 (345.1 bits), Expect = 2.9e-99, Sum P(2) = 2.9e-99
 Identities = 233/615 (37%), Positives = 324/615 (52%)

Query:   278 SGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQLAGPIPSHGSRLQ 336
             S  +PS   NL +L  L LSSN F G++P  F NL+Q++  DLS+N+L G  P     L 
Sbjct:   111 SASLPSGFGNLNRLEVLYLSSNGFLGQVPSSFSNLSQLNILDLSHNELTGSFP-FVQNLT 169

Query:   337 NLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKS----LQNIYLSNN 392
              L ++ L+ N FSGTIPS L +LP L  + L +N L+G I E P+ S    L+ +YL NN
Sbjct:   170 KLSILVLSYNHFSGTIPSSLLTLPFLSSLDLRENYLTGSI-EAPNSSTSSRLEFMYLGNN 228

Query:   393 RLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKID 452
               +G I   I +L+NL  L L     S   +  +F+    L  L LS NSL L  +   D
Sbjct:   229 HFEGQILEPISKLINLKHLDLSFLKTSYPIDLNLFSSFKSLVRLVLSGNSL-LATSITSD 287

Query:   453 SPFP-KFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVN 511
             S  P     L L +C +  FP  L+   +L ++DLS NKI G++P W   + +  L  VN
Sbjct:   288 SKIPLNLENLVLLSCGLIEFPTILKNLTKLEHIDLSNNKIKGKVPEWFWNLPR--LRRVN 345

Query:   512 LSHNFITKMKQ----IPWKNLGYLDLRSNLLQGXXXXXXXXXXXXXISNNQFTGEIIHSI 567
             L +N  T ++     +   ++  LDL  N  +G               NN FTG I    
Sbjct:   346 LFNNLFTDLEGSEEVLVNSSVRLLDLAYNHFRGPFPKPPLSINLLSAWNNSFTGNIPLET 405

Query:   568 CDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAXXXXXXXXXX 627
             C+  +L +LDLS N L G IP C+ +F  SL V++LR N L GS+P  F+          
Sbjct:   406 CNRSSLAILDLSYNNLTGPIPRCLSDFQESLIVVNLRKNNLEGSLPDIFSDGALLRTLDV 465

Query:   628 XXXXXGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREF 687
                   G +P+SL+NC+ +  + + + KI D FP+WL  LP+LQ L LRSNKFHG +   
Sbjct:   466 GYNQLTGKLPRSLLNCSMLRFVSVDHNKIKDTFPFWLKALPDLQALTLRSNKFHGPISPP 525

Query:   688 EPKE-SFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGE---EYY--QD 741
             +    +FPKLRIL++S NNF+G LP  +  N  A      ++G++ Y+G+    YY  +D
Sbjct:   526 DRGPLAFPKLRILEISDNNFTGSLPPNYFVNWEASSLQMNEDGRI-YMGDYNNPYYIYED 584

Query:   742 SVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKXXXXXXXXXXXXXFTGQIPS 801
             +V +  KG  +E  K+LT + TIDFS N  +G+I + IG              FTG IP 
Sbjct:   585 TVDLQYKGLFMEQGKVLTSYATIDFSGNKLEGQIPESIGLLKALIALNLSNNAFTGHIPL 644

Query:   802 SLGNLAKLESLDLSSNNVAGKIPKPXXXXXXXXXXXXXHNRLDGPIPHGPQFNTFQEDSY 861
             SL N+ +LESLDLS N ++G IP               HN+L G IP G Q     + S+
Sbjct:   645 SLANVTELESLDLSRNQLSGTIPNGLKTLSFLAYISVAHNQLIGEIPQGTQITGQSKSSF 704

Query:   862 IGNLGLCGFPLTKKC 876
              GN GLCG PL   C
Sbjct:   705 EGNAGLCGLPLQGSC 719

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
 Identities = 253/674 (37%), Positives = 353/674 (52%)

Query:   236 SIGNLKLLGRLMLGYSQFVGPVPASXXXXXXXXXXXXXXXXFSGHIPSSLSNLVQLTYLD 295
             S+  L+ L +L+LG +   G +P S                  G IPSSL NL  LT+LD
Sbjct:    45 SLFRLQHLQKLVLGSNHLSGILPDSIGNLKRLKVLVLVNCNLFGKIPSSLGNLSYLTHLD 104

Query:   296 LSSNSFFGEIPD-----------IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLN 344
             LS N F  E PD           +  L+ V++ DL +NQL G +PS+ S L  L    ++
Sbjct:   105 LSYNDFTSEGPDSMGNLNRLTDMLLKLSSVTWIDLGDNQLKGMLPSNMSSLSKLEAFDIS 164

Query:   345 NNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE 404
              NSFSGTIPS LF +P L  + L  N  SG  +      + NI         S PS++ +
Sbjct:   165 GNSFSGTIPSSLFMIPSLILLHLGRNDFSGPFE------IGNI---------SSPSNL-Q 208

Query:   405 LVNLTDLQLDSNNFS-GIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSL 463
             L+N+       NNF+  I +  +F+ L+ L YL +S  +L + +T  + SP     YL L
Sbjct:   209 LLNI-----GRNNFNPDIVDLSIFSPLLSLGYLDVSGINLKISSTVSLPSPI---EYLGL 260

Query:   464 SACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHN----FITK 519
              +CNIS FP+FLR Q  L YLD+S N+I+GQ+P W+  + +  L YVN+SHN    F   
Sbjct:   261 LSCNISEFPKFLRNQTSLEYLDISANQIEGQVPEWLWSLPE--LRYVNISHNSFNGFEGP 318

Query:   520 MKQIPW-KNLGYLDLRSNLLQGXXXXXXXXXXXXXIS-NNQFTGEIIHSICDIIALDVLD 577
                I   + L  LD+ SN+ Q               S NN+F+GEI  +IC++  L +L 
Sbjct:   319 ADVIQGGRELLVLDISSNIFQDPFPLLPVVSMNYLFSSNNRFSGEIPKTICELDNLRILV 378

Query:   578 LSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAXXXXXXXXXXXXXXXGGAIP 637
             LSNN  +G+IP C  N    L VL LRNN L+G  P   A                G +P
Sbjct:   379 LSNNNFSGSIPRCFENLH--LYVLHLRNNNLSGIFPEE-AISHHLQSFDVGHNLFSGELP 435

Query:   638 QSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKES--FPK 695
             +SL+NC+ +E L++ + +IND FP WL  LP LQ+LVLRSN+F+G +  F P +S  F +
Sbjct:   436 KSLINCSDIEFLNVEDNRINDTFPSWLELLPNLQILVLRSNEFYGPI--FSPGDSLSFSR 493

Query:   696 LRILDLSINNFSGYLPERFLENLNAMRNVSADEGKL-RY----LGEEYYQDSVVVTLKGT 750
             LRI D+S N F+G LP  +    + M +V   +G++ +Y    +  ++Y  SV +  KG 
Sbjct:   494 LRIFDISENRFTGVLPSDYFVGWSVMSSVVDIDGRIIQYTVTGIDRDFYHKSVALINKGL 553

Query:   751 EIEMQKI-LTVFTTIDFSSNGFDGEISQVIGKXXXXXXXXXXXXXFTGQIPSSLGNLAKL 809
             ++E+     T++ TID S N  +G+I + IG              FTG IP SL NL+ L
Sbjct:   554 KMELVGSGFTIYKTIDVSGNRLEGDIPESIGLLKEVIVLSMSNNAFTGHIPPSLSNLSNL 613

Query:   810 ESLDLSSNNVAGKIPKPXXXXXXXXXXXXXHNRLDGPIPHGPQFNTFQEDSYIGNLGLCG 869
             +SLDLS N ++G IP               HNRL+GPIP   Q  T    S+  N GLCG
Sbjct:   614 QSLDLSQNRLSGSIPGELGKLTFLEWMNFSHNRLEGPIPETTQIQTQDSSSFTENPGLCG 673

Query:   870 FPLTKKCGNDEAPT 883
              PL KKCG +E  T
Sbjct:   674 APLLKKCGGEEEAT 687

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
 Identities = 256/707 (36%), Positives = 374/707 (52%)

Query:   201 LSQNPSLAGKFPANNWT-SPIEYLDVSETSFSE-LPDSIGNLKLLGRLMLGYSQFVGPVP 258
             LS N  L+G+  ++    S +  LD+S  +FS  +P S+GNL  L  L L  + F G +P
Sbjct:   118 LSYN-HLSGQISSSIGNLSHLTTLDLSGNNFSGWIPSSLGNLFHLTSLHLYDNNFGGEIP 176

Query:   259 ASXXXXXXXXXXXXXXXXFSGHIPSSLSNLVQLTYLDLSSNSFFGEIP-DIFNLTQVSFF 317
             +S                F G IPSS  +L QL+ L L +N   G +P ++ NLT++S  
Sbjct:   177 SSLGNLSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDNNKLSGNLPLEVINLTKLSEI 236

Query:   318 DLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHID 377
              LS+NQ  G +P + + L  L     + N+F GTIPS LF++P +  + L +NQLSG ++
Sbjct:   237 SLSHNQFTGTLPPNITSLSILESFSASGNNFVGTIPSSLFTIPSITLIFLDNNQLSGTLE 296

Query:   378 --EFPSKS-LQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLK 434
                  S S L  + L  N L+G IP+SI  LVNL  L L   N  G  +  +F+ L  L 
Sbjct:   297 FGNISSPSNLLVLQLGGNNLRGPIPTSISRLVNLRTLDLSHFNIQGQVDFNIFSHLKLLG 356

Query:   435 YLYLSH-NSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSY---LDLSENK 490
              LYLSH N+ +  +   + S F     L LS  ++    +   +   L     L+LS   
Sbjct:   357 NLYLSHSNTTTTIDLNAVLSCFKMLISLDLSGNHVLVTNKSSVSDPPLGLIGSLNLSGCG 416

Query:   491 IDGQIPSWISEIGKDSLSYVNLSHNFITKMK-QIP-WK--NLGYLDLRSNLLQGXXXXXX 546
             I  + P  +    +  +  +++S+N   K+K Q+P W    L Y+ + +N   G      
Sbjct:   417 IT-EFPDILRT--QRQMRTLDISNN---KIKGQVPSWLLLQLEYMHISNNNFIGFERSTK 470

Query:   547 XXXXXXXI--------SNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSL 598
                             SNN F+G+I   IC + +L +LDLSNN  +G IP C+G F  +L
Sbjct:   471 LEKTVVPKPSMKHFFGSNNNFSGKIPSFICSLRSLIILDLSNNNFSGAIPPCVGKFKSTL 530

Query:   599 SVLDLRNNRLNGSIPGTFAXXXXXXXXXXXXXXXGGAIPQSLVNCTKVEVLDIGNIKIND 658
             S L+LR NRL+GS+P T                  G +P+SL++ + +EVL++ + +IND
Sbjct:   531 SDLNLRRNRLSGSLPKTIIKSLRSLDVSHNELE--GKLPRSLIHFSTLEVLNVESNRIND 588

Query:   659 AFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENL 718
              FP+WL +L +LQVLVLRSN FHG +     K  FPKLRI+D+S N+F+G LP       
Sbjct:   589 TFPFWLSSLKKLQVLVLRSNAFHGRIH----KTRFPKLRIIDISRNHFNGTLPSDCFVEW 644

Query:   719 NAMRNVSADEGKL--RYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEIS 776
               M ++  +E +   +Y+G  YY DS+V+  KG E+E+ +IL ++T +DFS N F+GEI 
Sbjct:   645 TGMHSLEKNEDRFNEKYMGSGYYHDSMVLMNKGLEMELVRILKIYTALDFSGNKFEGEIP 704

Query:   777 QVIGKXXXXXXXXXXXXXFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPXXXXXXXXXX 836
             + IG              FTG IPSS+GNL +LESLD+S N ++G+IP+           
Sbjct:   705 RSIGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSYLAYM 764

Query:   837 XXXHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKCGNDEAPT 883
                HN+L G +P G QF T    S+  NLGLCG PL ++C     PT
Sbjct:   765 NFSHNQLVGQVPGGTQFRTQSASSFEENLGLCGRPL-EECRVVHEPT 810

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2046600 RLP26 "receptor like protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 928 (331.7 bits), Expect = 6.9e-96, Sum P(2) = 6.9e-96
 Identities = 230/616 (37%), Positives = 324/616 (52%)

Query:   278 SGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQ 336
             S  +PS  SNL +L  L L+S+SF G++P  I NL  ++  +LS+N+L G  P   + L 
Sbjct:   104 SSSLPSEFSNLTRLEVLSLASSSFTGQVPSSISNLILLTHLNLSHNELTGSFPPVRN-LT 162

Query:   337 NLVLIRLNNNSFSGTIPSWLF-SLPLLEYVRLSDNQLSGHID---EFPSKSLQNIYLSNN 392
              L  + L+ N FSG IP  L  +LP L Y+ L  N L+G ID      S  L  + L  N
Sbjct:   163 KLSFLDLSYNQFSGAIPFDLLPTLPFLSYLDLKKNHLTGSIDVPNSSSSSKLVRLSLGFN 222

Query:   393 RLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKID 452
             + +G I   I +L+NL  L+L S N S   +  +FA L  L    +  N L L  +   D
Sbjct:   223 QFEGKIIEPISKLINLNHLELASLNISHPIDLRVFAPLKSLLVFDIRQNRL-LPASLSSD 281

Query:   453 SPFPKFSYLSLSA--CNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYV 510
             S FP  S +SL    C+I  FP   +T   L ++D+S N I G++P W  ++ +  LS  
Sbjct:   282 SEFP-LSLISLILIQCDIIEFPNIFKTLQNLEHIDISNNLIKGKVPEWFWKLPR--LSIA 338

Query:   511 NLSHNFIT----KMKQIPWKNLGYLDLRSNLLQGXXXXXXXXXXXXXISNNQFTGEIIHS 566
             NL +N +T      + +   ++  LD   N + G               NN FTG I  S
Sbjct:   339 NLVNNSLTGFEGSSEVLLNSSVQLLDFAYNSMTGAFPTPPLGSIYLSAWNNSFTGNIPLS 398

Query:   567 ICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAXXXXXXXXX 626
             IC+  +L VLDLS N+  G IP+C+ N    L V++LR N L GSIP  F          
Sbjct:   399 ICNRSSLIVLDLSYNKFTGPIPQCLSN----LKVVNLRKNSLEGSIPDEFHSGAKTQTLD 454

Query:   627 XXXXXXGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVRE 686
                    G +P+SL+NC+ +  L + N +I D FP+WL  LP L VL LRSN+F G +  
Sbjct:   455 VGYNRLTGKLPKSLLNCSSLRFLSVDNNRIEDTFPFWLKALPNLHVLTLRSNRFFGHLSP 514

Query:   687 FEPKE-SFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGE---EYY--Q 740
              +    +FP+LRIL+LS N+F+G LP  F  N  A      ++G++ Y+G+    YY  +
Sbjct:   515 PDRGPLAFPELRILELSDNSFTGSLPPNFFVNWKASSPKINEDGRI-YMGDYKNAYYIYE 573

Query:   741 DSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKXXXXXXXXXXXXXFTGQIP 800
             D++ +  KG  +E  K+LT ++TIDFS N  +G+I + IG              FTG IP
Sbjct:   574 DTMDLQYKGLFMEQGKVLTFYSTIDFSGNKLEGQIPESIGLLKELIALNLSNNAFTGHIP 633

Query:   801 SSLGNLAKLESLDLSSNNVAGKIPKPXXXXXXXXXXXXXHNRLDGPIPHGPQFNTFQEDS 860
              SL N+ +LESLDLS N ++G IP+              HN+L G IP GPQF+   E S
Sbjct:   634 MSLANVTELESLDLSRNQLSGNIPRELGSLSFLAYISVAHNQLKGEIPQGPQFSGQAESS 693

Query:   861 YIGNLGLCGFPLTKKC 876
             + GN+GLCG PL   C
Sbjct:   694 FEGNVGLCGLPLQGSC 709

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
 Identities = 267/792 (33%), Positives = 392/792 (49%)

Query:   121 YSEISSGFSRFR--NLTHFSLSDSNINCKIPYEISFLKMSTVVXXXXXXXXXXXXXXXXX 178
             Y    S  S FR  NL    L+ ++++ +IP  I  L   T +                 
Sbjct:   112 YGSFHSNSSLFRLQNLRVLDLTQNDLDGEIPSSIGNLSHLTSLHLSYNQFLGLIPSS--- 168

Query:   179 DCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFS-ELPDSI 237
                ++    +   HL + Q     Q PS  G    ++ TS    L++S   FS ++P SI
Sbjct:   169 ---IENLSRLTSLHLSSNQFS--GQIPSSIGNL--SHLTS----LELSSNQFSGQIPSSI 217

Query:   238 GNLKLLGRLMLGYSQFVGPVPASXXXXXXXXXXXXXXXXFSGHIPSSLSNLVQLTYLDLS 297
             GNL  L  L L  + F G +P+S                F G IPSS  NL QL  L + 
Sbjct:   218 GNLSNLTFLSLPSNDFFGQIPSSIGNLARLTYLYLSYNNFVGEIPSSFGNLNQLIVLQVD 277

Query:   298 SNSFFGEIP-DIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWL 356
             SN   G +P  + NLT++S   LS+NQ  G IP++ S L NL+    +NN+F+GT+PS L
Sbjct:   278 SNKLSGNVPISLLNLTRLSALLLSHNQFTGTIPNNISLLSNLMDFEASNNAFTGTLPSSL 337

Query:   357 FSLPLLEYVRLSDNQLSG--HIDEFPSKS-LQNIYLSNNRLQGSIPSSIFELVNLTDLQL 413
             F++P L  + LSDNQL+G  H     S S LQ + + +N   G+IP S+   VNLT   L
Sbjct:   338 FNIPPLIRLDLSDNQLNGTLHFGNISSPSNLQYLIIGSNNFIGTIPRSLSRFVNLTLFDL 397

Query:   414 DSNNFSGIAEPY-MFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFP 472
                N       + +F+ L  L  L LS+ + +  +   I   F     L +S   +SA  
Sbjct:   398 SHLNTQCRPVDFSIFSHLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDISGNLVSATN 457

Query:   473 RFLRTQDELSYLDLSENKIDGQIPSWISEI--GKDSLSYVNLSHNFITKMK-QIP-W--- 525
             +   + D  S   +    + G   +   EI   +  L ++++S+N   K+K Q+P W   
Sbjct:   458 KSSVSSDPPSQ-SIQSLYLSGCGITDFPEILRTQHELGFLDVSNN---KIKGQVPGWLWT 513

Query:   526 -KNLGYLDLRSNLL---------QGXXXXXXXXXXXXXISNNQFTGEIIHSICDIIALDV 575
               NL YL+L +N            G              SNN FTG+I   IC + +L+ 
Sbjct:   514 LPNLFYLNLSNNTFISFESSSKKHGLSSVRKPSMIHLFASNNNFTGKIPSFICGLRSLNT 573

Query:   576 LDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAXXXXXXXXXXXXXXXGGA 635
             LDLS N  NG+IP C+     +L VL+LR N L+G +P                    G 
Sbjct:   574 LDLSENNYNGSIPRCMEKLKSTLFVLNLRQNNLSGGLPKHIFESLRSLDVGHNLLV--GK 631

Query:   636 IPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPK 695
             +P+SL+  + +EVL++ + +IND FP+WL +L +LQVLVLRSN FHG + E     +FP+
Sbjct:   632 LPRSLIRFSNLEVLNVESNRINDTFPFWLSSLSKLQVLVLRSNAFHGPIHE----ATFPE 687

Query:   696 LRILDLSINNFSGYLPERFLENLNAMRNV--SADEGKLRYLGEE-YYQDSVVVTLKGTEI 752
             LRI+D+S N+F+G LP  +    +AM ++  + D+   +Y+G   YYQDS+V+  KG  +
Sbjct:   688 LRIIDISHNHFNGTLPTEYFVKWSAMSSLGKNEDQSNEKYMGSGLYYQDSMVLMNKGLAM 747

Query:   753 EMQKILTVFTTIDFSSNGFDGEISQVIGKXXXXXXXXXXXXXFTGQIPSSLGNLAKLESL 812
             E+ +ILT++T +DFS N F+GEI + IG              F G IPSS+GNL  LESL
Sbjct:   748 ELVRILTIYTALDFSGNKFEGEIPKSIGLLKELLVLNLSNNAFGGHIPSSMGNLTALESL 807

Query:   813 DLSSNNVAGKIPKPXXXXXXXXXXXXXHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPL 872
             D+S N + G+IP+              HN+L G +P G QF      ++  NLGL G  L
Sbjct:   808 DVSQNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGTQFRRQNCSAFENNLGLFGPSL 867

Query:   873 TKKCGNDEAPTT 884
              + C +   P +
Sbjct:   868 DEVCRDKHTPAS 879

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2087253 RLP39 "AT3G24900" [Arabidopsis thaliana (taxid:3702)]

 Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
 Identities = 253/722 (35%), Positives = 355/722 (49%)

Query:   191 FHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIG---NLKLLGRLM 247
             F + N   +         G+ P++   S +  L       +EL  S+    NL+ L  L 
Sbjct:   120 FGMLNKLEVLFMSTGGFLGQVPSS--FSNLSMLSALLLHHNELTGSLSFVRNLRKLTILD 177

Query:   248 LGYSQFVGPV-P-ASXXXXXXXXXXXXXXXXF-SGHIPSSLSNLVQLTYLDLSSNSFFGE 304
             + ++ F G + P +S                F S  +P    NL +L  LD+SSNSFFG+
Sbjct:   178 VSHNHFSGTLNPNSSLFELHNLAYLDLGSNNFTSSSLPYEFGNLNKLELLDVSSNSFFGQ 237

Query:   305 IPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLE 363
             +P  I NLTQ++   L  N   G +P     L  L ++ L++N FSGTIPS LF++P L 
Sbjct:   238 VPPTISNLTQLTELYLPLNDFTGSLPLV-QNLTKLSILHLSDNHFSGTIPSSLFTMPFLS 296

Query:   364 YVRLSDNQLSGHIDEFPSKSL----QNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFS 419
             Y+ L  N LSG I E P+ SL    +N+ L  N  +G I   I +L+NL +L L   N S
Sbjct:   297 YLDLGGNNLSGSI-EVPNSSLSSRLENLNLGENHFEGKIIEPISKLINLKELHLSFLNTS 355

Query:   420 GIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPK-FSYLSLSACNISAFPRFLRTQ 478
                   +F+ L  L  L LS   +S  +   +DS  P     L L  CNIS FP  L+T 
Sbjct:   356 YPINLKLFSSLKYLLLLDLSGGWISQAS-LSLDSYIPSTLEALLLKHCNISVFPNILKTL 414

Query:   479 DELSYLDLSENKIDGQIPSWISEIGKDSLSYV--NLSHNFITKMKQIPWKNLGYLDLRSN 536
               L ++ LS NKI G+IP W+  + + S  ++  NL   F    + +   ++  L+L SN
Sbjct:   415 PNLEFIALSTNKISGKIPEWLWSLPRLSSVFIEENLFTGFEGSSEILVNSSVRILNLLSN 474

Query:   537 LLQGXXXXXXXXXXXXXISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSP 596
              L+G               NN++ G+I  SIC   +L  LDLS N   G IP C  NF  
Sbjct:   475 NLEGALPHLPLSVNYFSARNNRYGGDIPLSICSRRSLVFLDLSYNNFTGPIPPCPSNFL- 533

Query:   597 SLSVLDLRNNRLNGSIPGTFAXXXXXXXXXXXXXXXGGAIPQSLVNCTKVEVLDIGNIKI 656
                +L+LR N L GSIP T+                 G +P+SL+NC+ ++ L + +  I
Sbjct:   534 ---ILNLRKNNLEGSIPDTYYADAPLRSLDVGYNRLTGKLPRSLLNCSALQFLSVDHNGI 590

Query:   657 NDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKES---FPKLRILDLSINNFSGYLPER 713
              D FP+ L  LP+LQVL+L SN F+G +    P +    FP+LRIL+++ N F+G LP  
Sbjct:   591 KDTFPFSLKALPKLQVLILHSNNFYGPLSP--PNQGSLGFPELRILEIAGNKFTGSLPPD 648

Query:   714 FLENLNAMR-NVSADEG------KLRYLGEEYYQDSVVVTL--KGTEIEMQKILTVFTTI 764
             F EN  A    ++ D+G      K+ Y G  Y+     + L  KG  +E  ++L+   TI
Sbjct:   649 FFENWKASSLTMNEDQGLYMVYNKVVY-GTYYFTSLEAIDLQYKGLSMEQNRVLSSSATI 707

Query:   765 DFSSNGFDGEISQVIGKXXXXXXXXXXXXXFTGQIPSSLGNLAKLESLDLSSNNVAGKIP 824
             DFS N  +GEI + IG              FTG IP SL NL K+ESLDLSSN ++G IP
Sbjct:   708 DFSGNRLEGEIPESIGLLKALIALNLSNNAFTGHIPLSLANLKKIESLDLSSNQLSGTIP 767

Query:   825 KPXXXXXXXXXXXXXHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKCGNDEAPTT 884
                            HN+L+G IP G Q     + S+ GN GLCG PL + C    AP  
Sbjct:   768 NGIGTLSFLAYMNVSHNQLNGEIPQGTQITGQPKSSFEGNAGLCGLPLQESCFGTNAPPA 827

Query:   885 FH 886
              H
Sbjct:   828 QH 829

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	901
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-64
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-56
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-19
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	7e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-05
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	5e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  233 bits (597), Expect = 2e-64
 Identities = 194/596 (32%), Positives = 285/596 (47%), Gaps = 64/596 (10%)

Query: 286 SNLVQLTYLDLSSNSFFGEI-PDIFNLTQVSFFDLSNNQLAGPIPSHGSRL-QNLVLIRL 343
           +N  ++  +DLS  +  G+I   IF L  +   +LSNNQL+GPIP        +L  + L
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 344 NNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHI--DEFPSKSLQNIYLSNNRLQGSIPSS 401
           +NN+F+G+IP    S+P LE + LS+N LSG I  D     SL+ + L  N L G IP+S
Sbjct: 126 SNNNFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183

Query: 402 IFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYL 461
           +  L +L  L L SN   G   P    ++  LK++YL +N+LS    ++I       ++L
Sbjct: 184 LTNLTSLEFLTLASNQLVG-QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHL 241

Query: 462 SLSACNISA-FPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKM 520
            L   N++   P  L     L YL L +NK+ G IP  I  +                  
Sbjct: 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL------------------ 283

Query: 521 KQIPWKNLGYLDLRSNLLQGPLP---VPPSSLRVLLISNNQFTGEIIHSICDIIALDVLD 577
                + L  LDL  N L G +P   +   +L +L + +N FTG+I  ++  +  L VL 
Sbjct: 284 -----QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQ 338

Query: 578 LSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIP 637
           L +N+ +G IP+ +G  + +L+VLDL  N L G IP     S  L  L L +N L G IP
Sbjct: 339 LWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397

Query: 638 QSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLR 697
           +SL  C  +  + + +   +   P     LP +  L + +N   G +     K   P L+
Sbjct: 398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS--RKWDMPSLQ 455

Query: 698 ILDLSINNFSGYLPERF----LENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIE 753
           +L L+ N F G LP+ F    LENL+  RN               +  +V   L      
Sbjct: 456 MLSLARNKFFGGLPDSFGSKRLENLDLSRN--------------QFSGAVPRKLGSLSEL 501

Query: 754 MQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLD 813
           MQ        +  S N   GEI   +     L  L+LSHN  +GQIP+S   +  L  LD
Sbjct: 502 MQ--------LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553

Query: 814 LSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCG 869
           LS N ++G+IPK L ++ SL  +N+SHN L G +P    F      +  GN+ LCG
Sbjct: 554 LSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  211 bits (538), Expect = 1e-56
 Identities = 184/578 (31%), Positives = 277/578 (47%), Gaps = 56/578 (9%)

Query: 61  SWKKDTNCCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFD 120
           +W    + C W G+TC+ ++  V+S+DLS   + G I  ++++F L ++QT+NLS+N   
Sbjct: 50  NWNSSADVCLWQGITCNNSS-RVVSIDLSGKNISGKI--SSAIFRLPYIQTINLSNNQLS 106

Query: 121 YSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFL--------KMSTVVLDSLKNLSSSL 172
                  F+   +L + +LS++N    IP               M +  + +     SSL
Sbjct: 107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166

Query: 173 TSLSLSDCILQGNFPINIFHLPNPQMIRLSQN------PSLAGKFPANNWTSPIEYLDVS 226
             L L   +L G  P ++ +L + + + L+ N      P   G+  +  W     YL  +
Sbjct: 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI----YLGYN 222

Query: 227 ETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLS 286
             S  E+P  IG L  L  L L Y+   GP+P+SLGNL  L  L L  N  SG IP S+ 
Sbjct: 223 NLS-GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF 281

Query: 287 NLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNN 345
           +L +L  LDLS NS  GEIP+ +  L  +    L +N   G IP   + L  L +++L +
Sbjct: 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341

Query: 346 NSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDE--FPSKSLQNIYLSNNRLQGSIPSSIF 403
           N FSG IP  L     L  + LS N L+G I E    S +L  + L +N L+G IP S+ 
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG 401

Query: 404 ELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSL 463
              +L  ++L  N+FSG   P  F KL  + +L +S+N+L  G         P    LSL
Sbjct: 402 ACRSLRRVRLQDNSFSG-ELPSEFTKLPLVYFLDISNNNLQ-GRINSRKWDMPSLQMLSL 459

Query: 464 SACNISA-FPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQ 522
           +        P    +   L  LDLS N+  G +P              +LS         
Sbjct: 460 ARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPR----------KLGSLSE-------- 500

Query: 523 IPWKNLGYLDLRSNLLQGPLPVPPSSLRVLL---ISNNQFTGEIIHSICDIIALDVLDLS 579
                L  L L  N L G +P   SS + L+   +S+NQ +G+I  S  ++  L  LDLS
Sbjct: 501 -----LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555

Query: 580 NNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFA 617
            N+L+G IP+ +GN   SL  +++ +N L+GS+P T A
Sbjct: 556 QNQLSGEIPKNLGNVE-SLVQVNISHNHLHGSLPSTGA 592

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 92.6 bits (230), Expect = 3e-19
 Identities = 50/122 (40%), Positives = 63/122 (51%), Gaps = 14/122 (11%)

Query: 764 IDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKI 823
           +   + G  G I   I KL  L+ +NLS N   G IP SLG++  LE LDLS N+  G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 824 PKPLTSLTSLSVLNLSHNRLDGPIP--------HGPQFNTFQEDSYIGNLGLCGFPLTKK 875
           P+ L  LTSL +LNL+ N L G +P        H   FN      +  N GLCG P  + 
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN------FTDNAGLCGIPGLRA 536

Query: 876 CG 877
           CG
Sbjct: 537 CG 538

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 70.2 bits (172), Expect = 2e-12
 Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 556 NNQ-FTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPG 614
           +NQ   G I + I  +  L  ++LS N + G IP  +G+ + SL VLDL  N  NGSIP 
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSIT-SLEVLDLSYNSFNGSIPE 484

Query: 615 TFAESNWLRSLNLNNNELGGAIPQSL 640
           +  +   LR LNLN N L G +P +L
Sbjct: 485 SLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.1 bits (156), Expect = 2e-10
 Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 4/87 (4%)

Query: 531 LDLRSNLLQGPLPVPPSSLRVLL---ISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTI 587
           L L +  L+G +P   S LR L    +S N   G I  S+  I +L+VLDLS N  NG+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 588 PECIGNFSPSLSVLDLRNNRLNGSIPG 614
           PE +G  + SL +L+L  N L+G +P 
Sbjct: 483 PESLGQLT-SLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 2e-09
 Identities = 29/74 (39%), Positives = 44/74 (59%)

Query: 233 LPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLT 292
           +P+ I  L+ L  + L  +   G +P SLG++T L +L L +N+F+G IP SL  L  L 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 293 YLDLSSNSFFGEIP 306
            L+L+ NS  G +P
Sbjct: 494 ILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 2e-09
 Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 270 LHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQLAGPI 328
           L L +    G IP+ +S L  L  ++LS NS  G IP    ++T +   DLS N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 329 PSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPL 361
           P    +L +L ++ LN NS SG +P+ L    L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLL 515

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 3e-09
 Identities = 33/84 (39%), Positives = 45/84 (53%)

Query: 601 LDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAF 660
           L L N  L G IP   ++   L+S+NL+ N + G IP SL + T +EVLD+     N + 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 661 PYWLGNLPELQVLVLRSNKFHGSV 684
           P  LG L  L++L L  N   G V
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 2e-08
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 2/91 (2%)

Query: 314 VSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLS 373
           +    L N  L G IP+  S+L++L  I L+ NS  G IP  L S+  LE + LS N  +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 374 GHIDEFPSK--SLQNIYLSNNRLQGSIPSSI 402
           G I E   +  SL+ + L+ N L G +P+++
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 56.2 bits (136), Expect = 3e-08
 Identities = 68/279 (24%), Positives = 101/279 (36%), Gaps = 42/279 (15%)

Query: 456 PKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIG----KDSLSYVN 511
            +    +L      A    LR Q  L  L LS N+         S +        L  ++
Sbjct: 28  LRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELD 87

Query: 512 LSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDII 571
           LS N +        ++L    LRS           SSL+ L ++NN      +  +   +
Sbjct: 88  LSDNALGPDGCGVLESL----LRS-----------SSLQELKLNNNGLGDRGLRLLAKGL 132

Query: 572 -----ALDVLDLSNNRLNGTIPECIGN---FSPSLSVLDLRNNRLNGS-IPGT---FAES 619
                AL+ L L  NRL G   E +      +  L  L+L NN +  + I         +
Sbjct: 133 KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN 192

Query: 620 NWLRSLNLNNNEL----GGAIPQSLVNCTKVEVLDIGNIKINDA-----FPYWLGNLPEL 670
             L  L+LNNN L      A+ ++L +   +EVL++G+  + DA         L     L
Sbjct: 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISL 252

Query: 671 QVLVLRSNKF--HGSVREFEPKESFPKLRILDLSINNFS 707
             L L  N     G+    E       L  LDL  N F 
Sbjct: 253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 4e-07
 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 255 GPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQ 313
           G +P  +  L  L  ++L  N+  G+IP SL ++  L  LDLS NSF G IP+ +  LT 
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 314 VSFFDLSNNQLAGPIPSH-GSRL 335
           +   +L+ N L+G +P+  G RL
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 5e-07
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 1/96 (1%)

Query: 573 LDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNEL 632
           +D L L N  L G IP  I      L  ++L  N + G+IP +      L  L+L+ N  
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 633 GGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLP 668
            G+IP+SL   T + +L++    ++   P  LG   
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.2 bits (113), Expect = 5e-07
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 784 SLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRL 843
           +L+ L+LS+N  T     +   L  L+ LDLS NN+    P+  + L SL  L+LS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 1e-06
 Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 23/111 (20%)

Query: 175 LSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELP 234
           L L +  L+G  P +I  L + Q I LS N S+ G                       +P
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGN-SIRG----------------------NIP 459

Query: 235 DSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSL 285
            S+G++  L  L L Y+ F G +P SLG LT L +L+L  N+ SG +P++L
Sbjct: 460 PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 3e-06
 Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 4/79 (5%)

Query: 369 DNQ-LSGHIDEFPSK--SLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPY 425
           DNQ L G I    SK   LQ+I LS N ++G+IP S+  + +L  L L  N+F+G   P 
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PE 484

Query: 426 MFAKLIKLKYLYLSHNSLS 444
              +L  L+ L L+ NSLS
Sbjct: 485 SLGQLTSLRILNLNGNSLS 503

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.8 bits (107), Expect = 3e-06
 Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 383 SLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHN 441
           +L+++ LSNNRL   IP   F+ L NL  L L  NN + I  P  F+ L  L+ L LS N
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSI-SPEAFSGLPSLRSLDLSGN 58

Query: 442 SL 443
           +L
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 49.6 bits (118), Expect = 5e-06
 Identities = 85/316 (26%), Positives = 128/316 (40%), Gaps = 20/316 (6%)

Query: 296 LSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSW 355
           LSSN+    +      T      ++ N     + S       L L          ++   
Sbjct: 12  LSSNTLREVLSSNTYHTTPQS--INLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSR- 68

Query: 356 LFSLPLLEYVRLSDNQLSGHIDEFPS-KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLD 414
              L  L+ +  S        +   +   L ++ L+ NRL+ +I S + EL NLT L LD
Sbjct: 69  ---LLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNI-SELLELTNLTSLDLD 124

Query: 415 SNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRF 474
           +NN + I       K   LK L LS N +   +        P    L LS  ++S  P+ 
Sbjct: 125 NNNITDIPPLIGLLK-SNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDLSDLPKL 181

Query: 475 LRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQI--PWKNLGYLD 532
           L     L+ LDLS NKI   +P  I      +L  ++LS+N I ++       KNL  L+
Sbjct: 182 LSNLSNLNNLDLSGNKI-SDLPPEIEL--LSALEELDLSNNSIIELLSSLSNLKNLSGLE 238

Query: 533 LRSNLLQGP--LPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPEC 590
           L +N L+         S+L  L +SNNQ     I S+  +  L  LDLS N L+  +P  
Sbjct: 239 LSNNKLEDLPESIGNLSNLETLDLSNNQ--ISSISSLGSLTNLRELDLSGNSLSNALPLI 296

Query: 591 IGNFSPSLSVLDLRNN 606
                    +L+L   
Sbjct: 297 ALLLLLLELLLNLLLT 312

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 48.5 bits (116), Expect = 7e-06
 Identities = 58/262 (22%), Positives = 99/262 (37%), Gaps = 47/262 (17%)

Query: 402 IFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYL 461
           + +L+ L  L+L+ N     A   + + L       L    LSL  T +I          
Sbjct: 19  LPKLLCLQVLRLEGNTLGEEAAKALASAL--RPQPSLKELCLSLNETGRIPR-------- 68

Query: 462 SLSACNISAFPRFLRTQDELSYLDLSENKI-DGQIPSWISEIGKDSLSYVNLSHNFITKM 520
                 + +  + L     L  LDLS+N +         S +   SL  + L++N +   
Sbjct: 69  -----GLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDR 123

Query: 521 K--------QIPWKNLGYLDLRSNLLQGP--------LPVPPSSLRVLLISNNQFTGEII 564
                    +     L  L L  N L+G         L      L+ L ++NN      I
Sbjct: 124 GLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRD-LKELNLANNGIGDAGI 182

Query: 565 HSICDIIA----LDVLDLSNNRLN----GTIPECIGNFSPSLSVLDLRNNRLNGSIPGTF 616
            ++ + +     L+VLDL+NN L       + E + +   SL VL+L +N L  +     
Sbjct: 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS-LKSLEVLNLGDNNLTDAGAAAL 241

Query: 617 AESNW-----LRSLNLNNNELG 633
           A +       L +L+L+ N++ 
Sbjct: 242 ASALLSPNISLLTLSLSCNDIT 263

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.8 bits (116), Expect = 7e-06
 Identities = 71/241 (29%), Positives = 103/241 (42%), Gaps = 8/241 (3%)

Query: 232 ELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQL 291
           +  +++ NL  L  L L  ++      + L  LT LT L L +NN +   P        L
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNL 142

Query: 292 TYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGT 351
             LDLS N        + NL  +   DLS N L+  +P   S L NL  + L+ N  S  
Sbjct: 143 KELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-D 200

Query: 352 IPSWLFSLPLLEYVRLSDNQLSGHIDEFPS-KSLQNIYLSNNRLQGSIPSSIFELVNLTD 410
           +P  +  L  LE + LS+N +   +    + K+L  + LSNN+L+  +P SI  L NL  
Sbjct: 201 LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLET 259

Query: 411 LQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISA 470
           L L +N    I+       L  L+ L LS NSLS                L+L     + 
Sbjct: 260 LDLSNNQ---ISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKAL 316

Query: 471 F 471
            
Sbjct: 317 E 317

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.0 bits (117), Expect = 8e-06
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 294 LDLSSNSFFGEIP-DIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTI 352
           L L +    G IP DI  L  +   +LS N + G IP     + +L ++ L+ NSF+G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 353 PSWLFSLPLLEYVRLSDNQLSGHI 376
           P  L  L  L  + L+ N LSG +
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 52/250 (20%), Positives = 84/250 (33%), Gaps = 39/250 (15%)

Query: 253 FVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLT 312
            +  +   L     L  L L  N         L +L++ + L                L 
Sbjct: 69  GLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSL------------QELKLN 116

Query: 313 QVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIP--SWLFSLPLLEYVRLSDN 370
                D     LA  +      L+ LVL R N    +        L +   L+ + L++N
Sbjct: 117 NNGLGDRGLRLLAKGLKDLPPALEKLVLGR-NRLEGASCEALAKALRANRDLKELNLANN 175

Query: 371 QLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKL 430
                I +   ++L     +N  L         E+++L +  L     S +AE    A L
Sbjct: 176 ----GIGDAGIRALAEGLKANCNL---------EVLDLNNNGLTDEGASALAE--TLASL 220

Query: 431 IKLKYLYLSHNSLSLGNTFKIDSPFPKFSY----LSLSACNISA-----FPRFLRTQDEL 481
             L+ L L  N+L+      + S     +     LSLS  +I+          L  ++ L
Sbjct: 221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESL 280

Query: 482 SYLDLSENKI 491
             LDL  NK 
Sbjct: 281 LELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 10/49 (20%)

Query: 30 EQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKK-DTNCCSWDGVTCD 77
          +   AL+ FK   S + D S         + SW    ++ CSW GVTCD
Sbjct: 3  DDRDALLAFKS--SLNGDPS-------GALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 17/59 (28%), Positives = 26/59 (44%)

Query: 622 LRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKF 680
           L+SL+L+NN L      +      ++VLD+    +    P     LP L+ L L  N  
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 28/60 (46%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 573 LDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNEL 632
           L  LDLSNNRL   IP+      P+L VLDL  N L    P  F+    LRSL+L+ N L
Sbjct: 2   LKSLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 61/272 (22%), Positives = 84/272 (30%), Gaps = 69/272 (25%)

Query: 353 PSWLFSLPLLEYVRLSDNQLSGH-----IDEFPSKSLQNIYLSNNRLQGSIPSSIFELVN 407
              L     L+ + LSDN L             S SLQ + L+NN L       + +   
Sbjct: 74  LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK--G 131

Query: 408 LTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYL------ 461
           L DL                     L+ L L  N L   +   +         L      
Sbjct: 132 LKDLPPA------------------LEKLVLGRNRLEGASCEALAKALRANRDLKELNLA 173

Query: 462 --SLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKD--SLSYVNLSHNFI 517
              +    I A    L+    L  LDL+ N +  +  S ++E      SL  +NL  N +
Sbjct: 174 NNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233

Query: 518 TKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLD 577
           T        + G   L S L       P  SL  L +S             DI      D
Sbjct: 234 T--------DAGAAALASAL-----LSPNISLLTLSLSC-----------NDITDDGAKD 269

Query: 578 LSNNRLNGTIPECIGNFSPSLSVLDLRNNRLN 609
           L+       + E       SL  LDLR N+  
Sbjct: 270 LA-----EVLAE-----KESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.4 bits (105), Expect = 3e-04
 Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 20/109 (18%)

Query: 484 LDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLP 543
           L L    + G IP+ IS++    L  +NLS N I     IP  +LG +            
Sbjct: 423 LGLDNQGLRGFIPNDISKLRH--LQSINLSGNSIRG--NIP-PSLGSI------------ 465

Query: 544 VPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIG 592
              +SL VL +S N F G I  S+  + +L +L+L+ N L+G +P  +G
Sbjct: 466 ---TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 20/57 (35%), Positives = 29/57 (50%)

Query: 762 TTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNN 818
            ++D S+N            L +L++L+LS N+ T   P +   L  L SLDLS NN
Sbjct: 3   KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.5 bits (100), Expect = 0.001
 Identities = 37/121 (30%), Positives = 47/121 (38%), Gaps = 21/121 (17%)

Query: 71  WDGVTC--DMATGN-VIS-LDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISS 126
           W G  C  D   G   I  L L    L G IP + S     HLQ++NLS N      I  
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLR--HLQSINLSGN-SIRGNIPP 460

Query: 127 GFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNF 186
                 +L    LS ++ N  IP             +SL  L +SL  L+L+   L G  
Sbjct: 461 SLGSITSLEVLDLSYNSFNGSIP-------------ESLGQL-TSLRILNLNGNSLSGRV 506

Query: 187 P 187
           P
Sbjct: 507 P 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 18/57 (31%), Positives = 26/57 (45%)

Query: 597 SLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGN 653
           +L  LDL NNRL     G F     L+ L+L+ N L    P++      +  LD+  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57

Length = 60

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 41.6 bits (97), Expect = 0.002
 Identities = 48/223 (21%), Positives = 104/223 (46%), Gaps = 23/223 (10%)

Query: 461 LSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKM 520
           L  ++  +++ P  L   D +  ++LS N+I  ++P  +      +L  ++L HN I+ +
Sbjct: 225 LYANSNQLTSIPATL--PDTIQEMELSINRIT-ELPERLPS----ALQSLDLFHNKISCL 277

Query: 521 KQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTG--EIIHSICDIIALDVLDL 578
            +   + L YL +  N ++      PS +  L + +N  T   E +        L  L+ 
Sbjct: 278 PENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLP-----PGLKTLEA 332

Query: 579 SNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQ 638
             N L  ++P    +  P L VLD+  N++   +P T   +  + +L+++ N L   +P+
Sbjct: 333 GENALT-SLPA---SLPPELQVLDVSKNQIT-VLPETLPPT--ITTLDVSRNALTN-LPE 384

Query: 639 SLVNCTKVEVLDIGNI-KINDAFPYWLGNLPELQVLVLRSNKF 680
           +L    ++      N+ ++ ++ P++ G  P+   +++  N F
Sbjct: 385 NLPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427

Length = 754

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 407 NLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSL--GNTFKIDSPFPKFSYLSLS 464
           NL  L L +N  + I     F  L  LK L LS N+L+      F   S  P    L LS
Sbjct: 1   NLKSLDLSNNRLTVI-PDGAFKGLPNLKVLDLSGNNLTSISPEAF---SGLPSLRSLDLS 56

Query: 465 ACNI 468
             N+
Sbjct: 57  GNNL 60

Length = 60

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 40.7 bits (95), Expect = 0.003
 Identities = 69/266 (25%), Positives = 98/266 (36%), Gaps = 45/266 (16%)

Query: 479 DELSYLDLSENKIDGQIPSWISEI--GKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSN 536
           DEL  +DLS N I  +    +  +     +L  VN S  F  + K   + NL        
Sbjct: 30  DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVM------ 83

Query: 537 LLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIA----LDVLDLSNNRLNGTIPECIG 592
           LL+  L  P   L+ + +S+N F  E    + D+I+    L  L L+NN L       IG
Sbjct: 84  LLKALLKCP--RLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG 141

Query: 593 NF------------SPSLSVLDLRNNRL-NGS---IPGTFAESNWLRSLNLNNN---ELG 633
                          P L V+    NRL NGS             L+ + +  N     G
Sbjct: 142 KALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEG 201

Query: 634 GA--IPQSLVNCTKVEVLDI--------GNIKINDAFPYWLGNLPELQVL-VLRSNKFHG 682
                   L     +EVLD+        G+  + DA   W   L EL++   L SN+   
Sbjct: 202 VTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW-NLLRELRLNDCLLSNEGVK 260

Query: 683 SVREFEPKESFPKLRILDLSINNFSG 708
           SV     ++  P L  L    N   G
Sbjct: 261 SVLRRFNEKFVPNLMPLPGDYNERRG 286

Length = 388

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	901
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
PLN03150	623	hypothetical protein; Provisional	99.54
PLN03150	623	hypothetical protein; Provisional	99.33
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.06
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.06
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.05
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.04
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.03
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.01
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.99
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.97
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.93
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.93
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.9
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.89
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.87
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.82
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.79
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.78
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.76
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.74
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.72
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.35
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.34
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.33
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.32
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.05
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.05
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.02
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.02
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.99
KOG4341	483	consensus F-box protein containing LRR [General fu	97.97
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.95
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.72
PRK15386	426	type III secretion protein GogB; Provisional	97.7
PRK15386	426	type III secretion protein GogB; Provisional	97.69
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.56
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.52
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.47
KOG4341	483	consensus F-box protein containing LRR [General fu	97.31
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.29
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.17
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.0
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.57
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.55
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.28
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.01
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.99
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.01
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.95
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.5
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.31
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.23
KOG4308	478	consensus LRR-containing protein [Function unknown	90.1
smart00370	26	LRR Leucine-rich repeats, outliers.	89.48
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.48
smart00370	26	LRR Leucine-rich repeats, outliers.	88.4
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.4
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.3
KOG4308	478	consensus LRR-containing protein [Function unknown	87.36
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.6
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.53
KOG0473	326	consensus Leucine-rich repeat protein [Function un	83.04
KOG3864	221	consensus Uncharacterized conserved protein [Funct	82.0

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.3e-69  Score=674.68  Aligned_cols=583  Identities=35%  Similarity=0.565  Sum_probs=393.4

Q ss_pred             CHHHHHHHHHhhhcCcCCCCCccccccCCCcCCCCCCCCCCcCccceeecCCCCeEEEEEcCCCCCCCCCCCCcccccCc
Q 041976           28 PREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKDTNCCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLL  107 (901)
Q Consensus        28 ~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~g~~~~~~~l~~l~  107 (901)
                      .++|++||++||+++.++.+          .+.+|..+++||.|.||+|+. .++|++|+|+++.+.|.+++  .+..++
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~----------~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~~~~l~   93 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLK----------YLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS--AIFRLP   93 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcc----------cCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCCh--HHhCCC
Confidence            56899999999999965433          678998888999999999985 57999999999999998877  788899


Q ss_pred             cCceEeCCCCCCCCCcCCcccc-CCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCC
Q 041976          108 HLQTLNLSHNDFDYSEISSGFS-RFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNF  186 (901)
Q Consensus       108 ~L~~L~Ls~n~~~~~~~~~~l~-~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~  186 (901)
                      +|++|+|++|.+.+. +|..+. ++++|++|+|++|++++.+|.  +.+              ++|++|++++|.+.+.+
T Consensus        94 ~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l--------------~~L~~L~Ls~n~~~~~~  156 (968)
T PLN00113         94 YIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI--------------PNLETLDLSNNMLSGEI  156 (968)
T ss_pred             CCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--ccc--------------CCCCEEECcCCcccccC
Confidence            999999999998876 776654 888999999998888887775  345              77888888888777777


Q ss_pred             ccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCC
Q 041976          187 PINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQ  266 (901)
Q Consensus       187 p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~  266 (901)
                      |..++.+++|++|++++| .+.+.+|                      ..++++++|++|++++|.+.+.+|..++++++
T Consensus       157 p~~~~~l~~L~~L~L~~n-~l~~~~p----------------------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  213 (968)
T PLN00113        157 PNDIGSFSSLKVLDLGGN-VLVGKIP----------------------NSLTNLTSLEFLTLASNQLVGQIPRELGQMKS  213 (968)
T ss_pred             ChHHhcCCCCCEEECccC-cccccCC----------------------hhhhhCcCCCeeeccCCCCcCcCChHHcCcCC
Confidence            777777777777777777 5555555                      56666666666666666666666666666666


Q ss_pred             CCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcC
Q 041976          267 LTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNN  345 (901)
Q Consensus       267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  345 (901)
                      |++|++++|.+++.+|..++++++|++|++++|.+.+.+|. +.++++|++|++++|.+.+.+|..+..+++|++|++++
T Consensus       214 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  293 (968)
T PLN00113        214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD  293 (968)
T ss_pred             ccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC
Confidence            66666666666666666666666666666666655544443 44444455555544444444444444444444444444


Q ss_pred             CcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchh
Q 041976          346 NSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPY  425 (901)
Q Consensus       346 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  425 (901)
                      |.+.+.+|.                                              .+.++++|+.|++++|.+.+..+ .
T Consensus       294 n~l~~~~p~----------------------------------------------~~~~l~~L~~L~l~~n~~~~~~~-~  326 (968)
T PLN00113        294 NSLSGEIPE----------------------------------------------LVIQLQNLEILHLFSNNFTGKIP-V  326 (968)
T ss_pred             CeeccCCCh----------------------------------------------hHcCCCCCcEEECCCCccCCcCC-h
Confidence            444433333                                              34444444444444444443322 1


Q ss_pred             hhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcCCC
Q 041976          426 MFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKD  505 (901)
Q Consensus       426 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~  505 (901)
                      .+..+                                                ++|+.|++++|.+.+.+|..+  ... 
T Consensus       327 ~~~~l------------------------------------------------~~L~~L~L~~n~l~~~~p~~l--~~~-  355 (968)
T PLN00113        327 ALTSL------------------------------------------------PRLQVLQLWSNKFSGEIPKNL--GKH-  355 (968)
T ss_pred             hHhcC------------------------------------------------CCCCEEECcCCCCcCcCChHH--hCC-
Confidence            22222                                                223333333333322222222  000 


Q ss_pred             CccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcc
Q 041976          506 SLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNG  585 (901)
Q Consensus       506 ~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  585 (901)
                                                               ++|+.|++++|++++.+|..++.+++|+.|++++|.+.+
T Consensus       356 -----------------------------------------~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~  394 (968)
T PLN00113        356 -----------------------------------------NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG  394 (968)
T ss_pred             -----------------------------------------CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecc
Confidence                                                     112222222222222333333344455555555555555


Q ss_pred             cCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCcccccc
Q 041976          586 TIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLG  665 (901)
Q Consensus       586 ~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~  665 (901)
                      .+|..+..+. +|+.|++++|++++..|                        ..|..+++|+.|++++|++.+.+|..+.
T Consensus       395 ~~p~~~~~~~-~L~~L~L~~n~l~~~~p------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  449 (968)
T PLN00113        395 EIPKSLGACR-SLRRVRLQDNSFSGELP------------------------SEFTKLPLVYFLDISNNNLQGRINSRKW  449 (968)
T ss_pred             cCCHHHhCCC-CCCEEECcCCEeeeECC------------------------hhHhcCCCCCEEECcCCcccCccChhhc
Confidence            5555444443 55555555555544444                        4444455555555555555555555555


Q ss_pred             CCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEE
Q 041976          666 NLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVV  745 (901)
Q Consensus       666 ~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~  745 (901)
                      .+++|++|++++|++.+.++...   ..++|+.|++++|++++.+|..+ .+                            
T Consensus       450 ~l~~L~~L~L~~n~~~~~~p~~~---~~~~L~~L~ls~n~l~~~~~~~~-~~----------------------------  497 (968)
T PLN00113        450 DMPSLQMLSLARNKFFGGLPDSF---GSKRLENLDLSRNQFSGAVPRKL-GS----------------------------  497 (968)
T ss_pred             cCCCCcEEECcCceeeeecCccc---ccccceEEECcCCccCCccChhh-hh----------------------------
Confidence            55555566666665555544432   34678888888888888777543 11                            


Q ss_pred             eecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCc
Q 041976          746 TLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPK  825 (901)
Q Consensus       746 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~  825 (901)
                                  ++.|++|+|++|++++.+|..++++++|++|+|++|.+++.+|..|+.+++|+.|||++|++++.+|.
T Consensus       498 ------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  565 (968)
T PLN00113        498 ------------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK  565 (968)
T ss_pred             ------------hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence                        46778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCeeeCCCCcCccCCCCCCCCCCcccccccCCcCCCCCC
Q 041976          826 PLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFP  871 (901)
Q Consensus       826 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~~~n~~lcg~~  871 (901)
                      .+..+++|+.|++++|++.|.+|..+++.++...++.||+++||.+
T Consensus       566 ~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        566 NLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             hHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            9999999999999999999999999999999999999999999865

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.8e-54  Score=537.19  Aligned_cols=512  Identities=34%  Similarity=0.538  Sum_probs=384.4

Q ss_pred             CcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCcccc-CCCCCCEEEccCCcCcccCCCCCCCCCCCEEECC
Q 041976          242 LLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLS-NLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLS  320 (901)
Q Consensus       242 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~  320 (901)
                      +++.|++++|.+.+.++..+..+++|++|++++|.+++.+|..+. .+++|++|++++|.+++.+|. ..+++|++|+++
T Consensus        70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls  148 (968)
T PLN00113         70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLS  148 (968)
T ss_pred             cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECc
Confidence            455555555555555555555555566666655555555554433 555666666666655554443 335556666666


Q ss_pred             CCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCC--CCCCCCEEEccCccCCCCC
Q 041976          321 NNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF--PSKSLQNIYLSNNRLQGSI  398 (901)
Q Consensus       321 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--~~~~L~~L~L~~n~l~~~~  398 (901)
                      +|.+.+.+|..++.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..  .+++|+.|++++|.+++.+
T Consensus       149 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  228 (968)
T PLN00113        149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI  228 (968)
T ss_pred             CCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcC
Confidence            66665556666666666666666666666566666666666666666665555444432  4455555555555566666


Q ss_pred             chhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccC
Q 041976          399 PSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQ  478 (901)
Q Consensus       399 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~  478 (901)
                      |..++++++|++|++++|.+.+..+ ..++++++|++|++++|.+.+                        .+|..+..+
T Consensus       229 p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~------------------------~~p~~l~~l  283 (968)
T PLN00113        229 PYEIGGLTSLNHLDLVYNNLTGPIP-SSLGNLKNLQYLFLYQNKLSG------------------------PIPPSIFSL  283 (968)
T ss_pred             ChhHhcCCCCCEEECcCceeccccC-hhHhCCCCCCEEECcCCeeec------------------------cCchhHhhc
Confidence            6667777777777777777666544 456666666666666555442                        234556666


Q ss_pred             CCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCc
Q 041976          479 DELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQ  558 (901)
Q Consensus       479 ~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~  558 (901)
                      ++|++|++++|.+.+.+|..+  ..+                                          ++|++|++++|.
T Consensus       284 ~~L~~L~Ls~n~l~~~~p~~~--~~l------------------------------------------~~L~~L~l~~n~  319 (968)
T PLN00113        284 QKLISLDLSDNSLSGEIPELV--IQL------------------------------------------QNLEILHLFSNN  319 (968)
T ss_pred             cCcCEEECcCCeeccCCChhH--cCC------------------------------------------CCCcEEECCCCc
Confidence            777777777777776666655  222                                          345566666677


Q ss_pred             cccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCc
Q 041976          559 FTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQ  638 (901)
Q Consensus       559 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  638 (901)
                      +.+..|..+..+++|+.|++++|.+++.+|..+..+. +|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|.
T Consensus       320 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~  398 (968)
T PLN00113        320 FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK  398 (968)
T ss_pred             cCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC-CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH
Confidence            7777788888899999999999999989998888876 999999999999999999999999999999999999999999


Q ss_pred             cccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhh
Q 041976          639 SLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENL  718 (901)
Q Consensus       639 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l  718 (901)
                      .+..+++|+.|++++|++++..|..+..++.|+.|++++|.+.+.++...  ..+++|+.|++++|++.+.+|..+ .  
T Consensus       399 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~p~~~-~--  473 (968)
T PLN00113        399 SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK--WDMPSLQMLSLARNKFFGGLPDSF-G--  473 (968)
T ss_pred             HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh--ccCCCCcEEECcCceeeeecCccc-c--
Confidence            99999999999999999999999999999999999999999998777654  578999999999999998777532 0  


Q ss_pred             HhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCC
Q 041976          719 NAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQ  798 (901)
Q Consensus       719 ~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  798 (901)
                                                             .++|+.||+++|++++.+|..+.++++|++|+|++|++++.
T Consensus       474 ---------------------------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  514 (968)
T PLN00113        474 ---------------------------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGE  514 (968)
T ss_pred             ---------------------------------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceee
Confidence                                                   35789999999999999999999999999999999999999


Q ss_pred             CCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCCCC-CCCCcccccccCCcCCC
Q 041976          799 IPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGP-QFNTFQEDSYIGNLGLC  868 (901)
Q Consensus       799 ~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~~-~~~~~~~~~~~~n~~lc  868 (901)
                      +|..++++++|++|+|++|++++.+|..+..+++|+.|+|++|+++|.+|... .+..+....+.+|...+
T Consensus       515 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        515 IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             CChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            99999999999999999999999999999999999999999999999999752 34445555566665443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=5.8e-40  Score=328.24  Aligned_cols=513  Identities=25%  Similarity=0.322  Sum_probs=248.4

Q ss_pred             CCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECC
Q 041976          194 PNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLM  273 (901)
Q Consensus       194 ~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~  273 (901)
                      ..|+.+++++| .+....++...+..+.+|++++|++..+|++++.+..++.++.++|++. .+|+.++.+.+|+.|+++
T Consensus        45 v~l~~lils~N-~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   45 VDLQKLILSHN-DLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS  122 (565)
T ss_pred             cchhhhhhccC-chhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence            45666666666 5555555555555666666666666666666666666666666665555 455555555555555555


Q ss_pred             CCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCC
Q 041976          274 HNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIP  353 (901)
Q Consensus       274 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  353 (901)
                      .|.+. .+|++++.+..|..++..+|++...+++++.+.+|..+++.+|++....|..+ +++.|+++|...|.++ .+|
T Consensus       123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP  199 (565)
T KOG0472|consen  123 SNELK-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLP  199 (565)
T ss_pred             cccee-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCC
Confidence            55555 44555555555555555555555444445555555555555555553322222 2555555555555444 444


Q ss_pred             hhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCC
Q 041976          354 SWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKL  433 (901)
Q Consensus       354 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L  433 (901)
                      ..++.+.+|+.|++..|++..                       .| .|.+|..|+++++..|++.-. |.+...+++++
T Consensus       200 ~~lg~l~~L~~LyL~~Nki~~-----------------------lP-ef~gcs~L~Elh~g~N~i~~l-pae~~~~L~~l  254 (565)
T KOG0472|consen  200 PELGGLESLELLYLRRNKIRF-----------------------LP-EFPGCSLLKELHVGENQIEML-PAEHLKHLNSL  254 (565)
T ss_pred             hhhcchhhhHHHHhhhccccc-----------------------CC-CCCccHHHHHHHhcccHHHhh-HHHHhcccccc
Confidence            455555555555555554432                       22 344444444444444444332 11233333444


Q ss_pred             cEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcC
Q 041976          434 KYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLS  513 (901)
Q Consensus       434 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls  513 (901)
                      ..||+.+|+++......  ..+.+|++|++++|.++.+|..++++ .|+.|-+.+|.+...-.+.+..+...-|++|.= 
T Consensus       255 ~vLDLRdNklke~Pde~--clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs-  330 (565)
T KOG0472|consen  255 LVLDLRDNKLKEVPDEI--CLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS-  330 (565)
T ss_pred             eeeeccccccccCchHH--HHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH-
Confidence            44444333333221111  12334444555555555555555555 555666666555432222221111111111100 


Q ss_pred             CCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhc
Q 041976          514 HNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGN  593 (901)
Q Consensus       514 ~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  593 (901)
                        .                +.+-.+...   .-.+-..-+     ...........+...+.|++++-+++ .+|+.++.
T Consensus       331 --~----------------~~~dglS~s---e~~~e~~~t-----~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfe  383 (565)
T KOG0472|consen  331 --K----------------IKDDGLSQS---EGGTETAMT-----LPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFE  383 (565)
T ss_pred             --h----------------hccCCCCCC---cccccccCC-----CCCCcccchhhhhhhhhhcccccccc-cCCHHHHH
Confidence              0                000000000   000000000     00001111122344555666666665 55555444


Q ss_pred             CC--CCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCc
Q 041976          594 FS--PSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQ  671 (901)
Q Consensus       594 ~~--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  671 (901)
                      ..  .-.+..+++.|++. .+|..+..+                        ..+.+.-+..|+..+.+|..+..+++|.
T Consensus       384 a~~~~~Vt~VnfskNqL~-elPk~L~~l------------------------kelvT~l~lsnn~isfv~~~l~~l~kLt  438 (565)
T KOG0472|consen  384 AAKSEIVTSVNFSKNQLC-ELPKRLVEL------------------------KELVTDLVLSNNKISFVPLELSQLQKLT  438 (565)
T ss_pred             HhhhcceEEEecccchHh-hhhhhhHHH------------------------HHHHHHHHhhcCccccchHHHHhhhcce
Confidence            32  01455555555554 344433333                        3333222222333344444455555555


Q ss_pred             EEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchh
Q 041976          672 VLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTE  751 (901)
Q Consensus       672 ~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~  751 (901)
                      .|++++|.+.                           .+|.++++                                   
T Consensus       439 ~L~L~NN~Ln---------------------------~LP~e~~~-----------------------------------  456 (565)
T KOG0472|consen  439 FLDLSNNLLN---------------------------DLPEEMGS-----------------------------------  456 (565)
T ss_pred             eeecccchhh---------------------------hcchhhhh-----------------------------------
Confidence            5555544432                           12222110                                   


Q ss_pred             HHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCC
Q 041976          752 IEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLT  831 (901)
Q Consensus       752 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~  831 (901)
                            +..|+.||+|.|+|. .+|..+..+..|+.+-.++|++....|+.+.+|.+|..|||.+|.+. .+|..+++++
T Consensus       457 ------lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmt  528 (565)
T KOG0472|consen  457 ------LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMT  528 (565)
T ss_pred             ------hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccc
Confidence                  122344444444443 44555555566666666778888777777888888888888888887 5677888888


Q ss_pred             CCCeeeCCCCcCccCCCCC--CCCCCcccccccCC
Q 041976          832 SLSVLNLSHNRLDGPIPHG--PQFNTFQEDSYIGN  864 (901)
Q Consensus       832 ~L~~L~Ls~N~l~g~iP~~--~~~~~~~~~~~~~n  864 (901)
                      +|+.|++++|++.  .|..  ....+....+|.++
T Consensus       529 nL~hLeL~gNpfr--~Pr~~iLmkgT~aiL~ylrd  561 (565)
T KOG0472|consen  529 NLRHLELDGNPFR--QPRHQILMKGTAAILSYLRD  561 (565)
T ss_pred             ceeEEEecCCccC--CCHHHHhccChHHHHHHhcc
Confidence            8888888888887  3422  22234444555554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=7.1e-36  Score=311.98  Aligned_cols=345  Identities=25%  Similarity=0.318  Sum_probs=268.4

Q ss_pred             CCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeecc
Q 041976          455 FPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLR  534 (901)
Q Consensus       455 ~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~  534 (901)
                      +|+|+++++..|.++.+|.+.+...+++.|++.+|.|...-.+.+  ...+.|+.||+|.|.|+.++...|+.       
T Consensus       101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L--~~l~alrslDLSrN~is~i~~~sfp~-------  171 (873)
T KOG4194|consen  101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEEL--SALPALRSLDLSRNLISEIPKPSFPA-------  171 (873)
T ss_pred             CCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHH--HhHhhhhhhhhhhchhhcccCCCCCC-------
Confidence            444444444444455556555555556677777776665544444  33355666666666665555444321       


Q ss_pred             CccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCc
Q 041976          535 SNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPG  614 (901)
Q Consensus       535 ~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~  614 (901)
                                 -.++++|++++|.|+..-...|..+.+|..|.|++|+++ .+|...+.-.++|+.|+|..|+|.-.--.
T Consensus       172 -----------~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~l  239 (873)
T KOG4194|consen  172 -----------KVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGL  239 (873)
T ss_pred             -----------CCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhh
Confidence                       246777888888888777788888888889999999988 66655555334899999999988744456


Q ss_pred             CccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCC
Q 041976          615 TFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFP  694 (901)
Q Consensus       615 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~  694 (901)
                      +|.++++|+.|.|..|.+.......|..|.++++|+|+.|++...-..|+.++++|+.|+++.|.|...-+..+  .-.+
T Consensus       240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W--sftq  317 (873)
T KOG4194|consen  240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW--SFTQ  317 (873)
T ss_pred             hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh--hhcc
Confidence            78899999999999999988888889999999999999999988888888999999999999998876555444  5568


Q ss_pred             CCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccc
Q 041976          695 KLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGE  774 (901)
Q Consensus       695 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  774 (901)
                      +|+.|||++|+++. +++..|..+..|+.+.++.|.+.++....|..                +.+|+.|||++|.+++.
T Consensus       318 kL~~LdLs~N~i~~-l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~----------------lssL~~LdLr~N~ls~~  380 (873)
T KOG4194|consen  318 KLKELDLSSNRITR-LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG----------------LSSLHKLDLRSNELSWC  380 (873)
T ss_pred             cceeEecccccccc-CChhHHHHHHHhhhhcccccchHHHHhhHHHH----------------hhhhhhhcCcCCeEEEE
Confidence            89999999999985 55566788999999999999998887665544                78999999999999887


Q ss_pred             cc---hhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCC
Q 041976          775 IS---QVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSH  840 (901)
Q Consensus       775 ~~---~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  840 (901)
                      |-   ..|.++++|+.|+|.+|++..+...+|..+.+||.|||.+|.|..+-|.+|..+ .|+.|-+..
T Consensus       381 IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  381 IEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             EecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            64   458889999999999999998888899999999999999999999999999998 888887653

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.4e-39  Score=323.81  Aligned_cols=475  Identities=28%  Similarity=0.388  Sum_probs=234.4

Q ss_pred             ccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCC
Q 041976          172 LTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYS  251 (901)
Q Consensus       172 L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n  251 (901)
                      |+.+.+++|.+. .+-..+.++..|.+|++.+| .++...|.+..+..++.++.++|++.++|+.++.+.+|+.|+.++|
T Consensus        47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n  124 (565)
T KOG0472|consen   47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN  124 (565)
T ss_pred             hhhhhhccCchh-hccHhhhcccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence            444444444443 12223344444444444444 4443334444444444444555555555555555555555555555


Q ss_pred             CCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCcc
Q 041976          252 QFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSH  331 (901)
Q Consensus       252 ~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  331 (901)
                      .+. .+|++++.+..|+.|+..+|+++ ..|.++..+.+|..+++.+|++....|..-+++.|+++|...|.+. .+|..
T Consensus       125 ~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~  201 (565)
T KOG0472|consen  125 ELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPE  201 (565)
T ss_pred             cee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChh
Confidence            544 34444555555555555555554 4444455555555555555555544444333555555555554443 45555


Q ss_pred             ccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCC--CCCCCCEEEccCccCCCCCchhhhcccccC
Q 041976          332 GSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF--PSKSLQNIYLSNNRLQGSIPSSIFELVNLT  409 (901)
Q Consensus       332 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  409 (901)
                      ++.+.+|..|++..|++. ..| .|.++..|++++++.|++.-...+.  .++++..||+++|+++ ..|..+.-+.+|+
T Consensus       202 lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~  278 (565)
T KOG0472|consen  202 LGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLE  278 (565)
T ss_pred             hcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhh
Confidence            555555555555555554 333 3455555555555555544222221  3445555555555554 4455555555555


Q ss_pred             ceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCC-CCccEEe-------cCCcCC---C--CCCh---
Q 041976          410 DLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPF-PKFSYLS-------LSACNI---S--AFPR---  473 (901)
Q Consensus       410 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~L~~L~-------l~~~~l---~--~lp~---  473 (901)
                      .||+++|.+++..  ..++++ +|+.|.+.+|++.......+..+- .-|++|.       ++...-   +  ..|.   
T Consensus       279 rLDlSNN~is~Lp--~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~  355 (565)
T KOG0472|consen  279 RLDLSNNDISSLP--YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESF  355 (565)
T ss_pred             hhcccCCccccCC--cccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcc
Confidence            5555555555552  345555 555555555544321100000000 0011110       010000   0  1111   


Q ss_pred             -hhccCCCCCEEeCCCCcccccCChhh-hhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcE
Q 041976          474 -FLRTQDELSYLDLSENKIDGQIPSWI-SEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRV  551 (901)
Q Consensus       474 -~l~~~~~L~~L~ls~n~l~~~~p~~~-~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~  551 (901)
                       ......+.+.|++++-+++. +|+.+ ......-...++++.|++..++...- .++                 .-++.
T Consensus       356 ~~~~~~i~tkiL~~s~~qlt~-VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~-~lk-----------------elvT~  416 (565)
T KOG0472|consen  356 PDIYAIITTKILDVSDKQLTL-VPDEVFEAAKSEIVTSVNFSKNQLCELPKRLV-ELK-----------------ELVTD  416 (565)
T ss_pred             cchhhhhhhhhhccccccccc-CCHHHHHHhhhcceEEEecccchHhhhhhhhH-HHH-----------------HHHHH
Confidence             22344567788888877774 44443 33333445666666666655543210 000                 00112


Q ss_pred             EEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCc
Q 041976          552 LLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNE  631 (901)
Q Consensus       552 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~  631 (901)
                      +.+++|.+ +.+|..++.+++|..|++++|.+. .+|..++.+. .|+.|+++.|++. ..|..+-.+..++.+-.++|+
T Consensus       417 l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv-~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nq  492 (565)
T KOG0472|consen  417 LVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLV-RLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQ  492 (565)
T ss_pred             HHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhh-hhheecccccccc-cchHHHhhHHHHHHHHhcccc
Confidence            23333333 355666666666777777766665 5666666665 5666666666665 455555555555555556666


Q ss_pred             ccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCc
Q 041976          632 LGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFH  681 (901)
Q Consensus       632 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~  681 (901)
                      +....|..+.++.+|++||+.+|.+.. +|..++++++|++|++.+|+|.
T Consensus       493 i~~vd~~~l~nm~nL~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  493 IGSVDPSGLKNMRNLTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccccChHHhhhhhhcceeccCCCchhh-CChhhccccceeEEEecCCccC
Confidence            665555556666666666666666533 3444566666666666555553

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-35  Score=308.12  Aligned_cols=390  Identities=24%  Similarity=0.291  Sum_probs=236.0

Q ss_pred             CEEECCCCCCccCCCccccCC--CCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCC-CCCCCCEEECC
Q 041976          244 GRLMLGYSQFVGPVPASLGNL--TQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLS  320 (901)
Q Consensus       244 ~~L~L~~n~~~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~l~  320 (901)
                      +.|+.+++.+...-...+...  ..-++||+++|.+....+..|.++++|+.+++.+|.++ .+|.++ ...+|+.|+|.
T Consensus        55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~  133 (873)
T KOG4194|consen   55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLR  133 (873)
T ss_pred             eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeee
Confidence            456666665543222222221  23456888888887777777778888888888777776 344433 34457777777


Q ss_pred             CCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCch
Q 041976          321 NNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPS  400 (901)
Q Consensus       321 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~  400 (901)
                      +|.|+..-.+.+..++.|+.|||+.|.|+...-..|..-.++++|+|++|.++                      .....
T Consensus       134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It----------------------~l~~~  191 (873)
T KOG4194|consen  134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT----------------------TLETG  191 (873)
T ss_pred             ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc----------------------ccccc
Confidence            77776655666666666777777776666444444444455555555555554                      34444


Q ss_pred             hhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCCh-hhccCC
Q 041976          401 SIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPR-FLRTQD  479 (901)
Q Consensus       401 ~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~-~l~~~~  479 (901)
                      .|..+.+|..|.|+.|+++...+ ..|.++++|+.|+|..|++.......+ ..+++|+.|.+..|++..+.+ .|..+.
T Consensus       192 ~F~~lnsL~tlkLsrNrittLp~-r~Fk~L~~L~~LdLnrN~irive~ltF-qgL~Sl~nlklqrN~I~kL~DG~Fy~l~  269 (873)
T KOG4194|consen  192 HFDSLNSLLTLKLSRNRITTLPQ-RSFKRLPKLESLDLNRNRIRIVEGLTF-QGLPSLQNLKLQRNDISKLDDGAFYGLE  269 (873)
T ss_pred             cccccchheeeecccCcccccCH-HHhhhcchhhhhhccccceeeehhhhh-cCchhhhhhhhhhcCcccccCcceeeec
Confidence            44445555555555555554422 445555555555555555443322222 245555555555555555544 455666


Q ss_pred             CCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCcc
Q 041976          480 ELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQF  559 (901)
Q Consensus       480 ~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l  559 (901)
                      ++++|+++.|+++..-..|+  .++++|+.|++|+|.|..+....|.                  ..++|++|++++|++
T Consensus       270 kme~l~L~~N~l~~vn~g~l--fgLt~L~~L~lS~NaI~rih~d~Ws------------------ftqkL~~LdLs~N~i  329 (873)
T KOG4194|consen  270 KMEHLNLETNRLQAVNEGWL--FGLTSLEQLDLSYNAIQRIHIDSWS------------------FTQKLKELDLSSNRI  329 (873)
T ss_pred             ccceeecccchhhhhhcccc--cccchhhhhccchhhhheeecchhh------------------hcccceeEecccccc
Confidence            77777777777766666666  5666777777777766666554442                  134566666666666


Q ss_pred             ccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCC---cCccCCCccCEEEccCCcccccC
Q 041976          560 TGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIP---GTFAESNWLRSLNLNNNELGGAI  636 (901)
Q Consensus       560 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~  636 (901)
                      +...+..|..+..|++|.|++|++...--..+..+. +|++|||++|.++..+.   ..|.++++|+.|++.+|++..+.
T Consensus       330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls-sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~  408 (873)
T KOG4194|consen  330 TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS-SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP  408 (873)
T ss_pred             ccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh-hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc
Confidence            666666666677777777777777633333333333 77777777777765442   34667777777777777777666


Q ss_pred             CccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcC
Q 041976          637 PQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKF  680 (901)
Q Consensus       637 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~  680 (901)
                      -.+|.++.+|+.|||.+|.|..+-|++|..+ .|+.|.+..-.|
T Consensus       409 krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  409 KRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             hhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence            6677777777777777777777777777776 677766654433

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-35  Score=323.80  Aligned_cols=512  Identities=27%  Similarity=0.333  Sum_probs=351.7

Q ss_pred             eecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCc
Q 041976          223 LDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFF  302 (901)
Q Consensus       223 L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  302 (901)
                      +|.+.+.++-+|..+-.-..++.|+++.|.+...--+.+.+.-+|+.|++++|++. ..|..+..+.+|+.|+++.|.+.
T Consensus         3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~   81 (1081)
T KOG0618|consen    3 VDASDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR   81 (1081)
T ss_pred             cccccccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh
Confidence            56777777788877766666888888888765322233445556899999988887 77888888888999999998888


Q ss_pred             ccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCC
Q 041976          303 GEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSK  382 (901)
Q Consensus       303 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  382 (901)
                      .....+.++.+|+++.|.+|.+. ..|..+..+++|+.|+++.|.+. .+|..+..++.++.+..++|......+.   .
T Consensus        82 ~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~---~  156 (1081)
T KOG0618|consen   82 SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ---T  156 (1081)
T ss_pred             hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc---c
Confidence            65545788888999999888877 78888889999999999999887 7788888888888888888832222222   2


Q ss_pred             CCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEe
Q 041976          383 SLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLS  462 (901)
Q Consensus       383 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  462 (901)
                      .++.+++..|.+.+.++..+..+..  .|+|.+|.+. .   ..+..+.+|+.+....|++....               
T Consensus       157 ~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~---~dls~~~~l~~l~c~rn~ls~l~---------------  215 (1081)
T KOG0618|consen  157 SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V---LDLSNLANLEVLHCERNQLSELE---------------  215 (1081)
T ss_pred             cchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h---hhhhhccchhhhhhhhcccceEE---------------
Confidence            3777777777777777766666655  6777777776 2   23455555555555555443111               


Q ss_pred             cCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCC
Q 041976          463 LSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPL  542 (901)
Q Consensus       463 l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~  542 (901)
                                   ..-++++.|+.++|.++...+.                                             
T Consensus       216 -------------~~g~~l~~L~a~~n~l~~~~~~---------------------------------------------  237 (1081)
T KOG0618|consen  216 -------------ISGPSLTALYADHNPLTTLDVH---------------------------------------------  237 (1081)
T ss_pred             -------------ecCcchheeeeccCcceeeccc---------------------------------------------
Confidence                         0112344444444433311110                                             


Q ss_pred             CCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCcc
Q 041976          543 PVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWL  622 (901)
Q Consensus       543 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  622 (901)
                       ..+.+++++++++|++++ +|..++.+.+|+.+++.+|++. .+|..+.... +|+.|.+..|.+. -+|.......+|
T Consensus       238 -p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~-~L~~l~~~~nel~-yip~~le~~~sL  312 (1081)
T KOG0618|consen  238 -PVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRIT-SLVSLSAAYNELE-YIPPFLEGLKSL  312 (1081)
T ss_pred             -cccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhh-hHHHHHhhhhhhh-hCCCccccccee
Confidence             124567777777777774 4478888888888888888886 7777777776 8888888888887 455566778888


Q ss_pred             CEEEccCCcccccCCccccCCCc-ccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEc
Q 041976          623 RSLNLNNNELGGAIPQSLVNCTK-VEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDL  701 (901)
Q Consensus       623 ~~L~Ls~N~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~L  701 (901)
                      ++|+|..|++....+..|.-... |..|..+.|++.......=...+.|+.|.+.+|.++.......  .++++|+.|+|
T Consensus       313 ~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l--~~~~hLKVLhL  390 (1081)
T KOG0618|consen  313 RTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL--VNFKHLKVLHL  390 (1081)
T ss_pred             eeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh--ccccceeeeee
Confidence            88888888887443333443333 7777778887765543333356778889999998876654443  77889999999


Q ss_pred             CCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhc
Q 041976          702 SINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGK  781 (901)
Q Consensus       702 s~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  781 (901)
                      ++|++. .+|...+.++..|+.+++++|.++.++..                 ...+..|++|...+|++. ..| .+.+
T Consensus       391 syNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~t-----------------va~~~~L~tL~ahsN~l~-~fP-e~~~  450 (1081)
T KOG0618|consen  391 SYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDT-----------------VANLGRLHTLRAHSNQLL-SFP-ELAQ  450 (1081)
T ss_pred             cccccc-cCCHHHHhchHHhHHHhcccchhhhhhHH-----------------HHhhhhhHHHhhcCCcee-ech-hhhh
Confidence            999886 68888888888777777777776655421                 011455666777777776 445 6777


Q ss_pred             cCCCCeEeCCCCcCCCC-CCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCCCC
Q 041976          782 LHSLRLLNLSHNHFTGQ-IPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGP  851 (901)
Q Consensus       782 l~~L~~L~Ls~N~l~~~-~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~~  851 (901)
                      +++|+.+|+|.|.++.. +|..... ++|++|||++|.-....-+.|..+.++...++.-|    .+|++.
T Consensus       451 l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~----~~~d~~  516 (1081)
T KOG0618|consen  451 LPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN----NTPDGN  516 (1081)
T ss_pred             cCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC----CCCccc
Confidence            77888888888877753 3433332 67788888887754455556666666666666655    455553

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=2.2e-34  Score=317.28  Aligned_cols=500  Identities=25%  Similarity=0.308  Sum_probs=314.5

Q ss_pred             EeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCccc-ccccccccchhhcccCCCCccEEEcCCCcCCCCCcccc
Q 041976          112 LNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEI-SFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINI  190 (901)
Q Consensus       112 L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l-~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l  190 (901)
                      +|++..++.-  ||..+-.-..++.|+++.|.+. ..|-++ .+.              -+|+.||+++|.+. .+|..+
T Consensus         3 vd~s~~~l~~--ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~--------------v~L~~l~lsnn~~~-~fp~~i   64 (1081)
T KOG0618|consen    3 VDASDEQLEL--IPEQILNNEALQILNLRRNSLL-SRPLEFVEKR--------------VKLKSLDLSNNQIS-SFPIQI   64 (1081)
T ss_pred             cccccccCcc--cchhhccHHHHHhhhccccccc-cCchHHhhhe--------------eeeEEeeccccccc-cCCchh
Confidence            4555555544  6666666666778888777654 223111 111              34777888777764 667777


Q ss_pred             CCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEE
Q 041976          191 FHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLL  270 (901)
Q Consensus       191 ~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L  270 (901)
                      ..+.+|+.|+++.| .+...-.....+.+|+++.|.+|.++.+|.++..+++|++|++++|.+. .+|..+..++.++.+
T Consensus        65 t~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~  142 (1081)
T KOG0618|consen   65 TLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEEL  142 (1081)
T ss_pred             hhHHHHhhcccchh-hHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHH
Confidence            77777777777777 4432222345667777777777777777777777777777777777765 566666667777777


Q ss_pred             ECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCc
Q 041976          271 HLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFS  349 (901)
Q Consensus       271 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  349 (901)
                      ..++|.....    ++... ++++++..|.+.+.++. +..++.  .|++++|.+.   ...+..+.+|+.+....|++.
T Consensus       143 ~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls  212 (1081)
T KOG0618|consen  143 AASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS  212 (1081)
T ss_pred             hhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccc
Confidence            7776622212    22222 66666666666555444 444444  5666666654   233455566666666666654


Q ss_pred             ccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhh
Q 041976          350 GTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAK  429 (901)
Q Consensus       350 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~  429 (901)
                      ...    -.-++|+.|+.+.|.++.........+|+.++++.|+++ .+|+|+..+.+|+.++..+|.++..  +..+..
T Consensus       213 ~l~----~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~l--p~ri~~  285 (1081)
T KOG0618|consen  213 ELE----ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVAL--PLRISR  285 (1081)
T ss_pred             eEE----ecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHHhh--HHHHhh
Confidence            321    133556666666666664333334455666666666665 3446666666666666666666443  233333


Q ss_pred             cCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccE
Q 041976          430 LIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSY  509 (901)
Q Consensus       430 l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~  509 (901)
                      .                         .+|+.|.+..|.+..+|......+.|++|++..|++. ..|+.+...-..++..
T Consensus       286 ~-------------------------~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~  339 (1081)
T KOG0618|consen  286 I-------------------------TSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNT  339 (1081)
T ss_pred             h-------------------------hhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHH
Confidence            3                         4555555556666666666666777777777777765 3444443333344666


Q ss_pred             EEcCCCccCCccc---CCCCCCceeeccCccccCCCCC---CCCCCcEEEccCCccccccccccccCCCCCEEECCCCcC
Q 041976          510 VNLSHNFITKMKQ---IPWKNLGYLDLRSNLLQGPLPV---PPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRL  583 (901)
Q Consensus       510 L~ls~n~l~~~~~---~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  583 (901)
                      ++.+.|++...+.   ..++.|+.|.+.+|.++.....   ....||.|++++|++.......+.++..|++|++|+|++
T Consensus       340 ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL  419 (1081)
T KOG0618|consen  340 LNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL  419 (1081)
T ss_pred             HhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchh
Confidence            7777777766653   2356678888888888764433   267888888888888877777778888888888888888


Q ss_pred             cccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCcccc
Q 041976          584 NGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYW  663 (901)
Q Consensus       584 ~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  663 (901)
                      + .+|..+..+. .|++|...+|++. ..| .+..++.|+.+|++.|+++...-..-...++|++||+++|.-....-..
T Consensus       420 ~-~Lp~tva~~~-~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~  495 (1081)
T KOG0618|consen  420 T-TLPDTVANLG-RLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKT  495 (1081)
T ss_pred             h-hhhHHHHhhh-hhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhh
Confidence            7 7788887776 8888888888887 566 6788888888888888887443222222378888888888754444444


Q ss_pred             ccCCCCCcEEEccCC
Q 041976          664 LGNLPELQVLVLRSN  678 (901)
Q Consensus       664 l~~l~~L~~L~L~~n  678 (901)
                      |..+..+...++.-+
T Consensus       496 l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  496 LKVLKSLSQMDITLN  510 (1081)
T ss_pred             hHHhhhhhheecccC
Confidence            555555555555544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.5e-32  Score=288.65  Aligned_cols=366  Identities=25%  Similarity=0.330  Sum_probs=306.5

Q ss_pred             ccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCC
Q 041976          104 FHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQ  183 (901)
Q Consensus       104 ~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~  183 (901)
                      +-++..|-.|+++|+|+|..+|+....++.++.|.|....+. .+|.+++.+              .+|++|.+++|++.
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~l--------------qkLEHLs~~HN~L~   68 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRL--------------QKLEHLSMAHNQLI   68 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHH--------------hhhhhhhhhhhhhH
Confidence            456677888888888888778888889999999998888875 788888888              88999999998876


Q ss_pred             CCCccccCCCCCCCEEeCCCCCCCC--ccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCc-c
Q 041976          184 GNFPINIFHLPNPQMIRLSQNPSLA--GKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPA-S  260 (901)
Q Consensus       184 ~~~p~~l~~l~~L~~L~L~~n~~l~--~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~-~  260 (901)
                       .+-..++.++.||.+++..| ++.  |..+++-.+..|..||||+|++.+.|..+..-+++-+|+|++|+|.. +|. -
T Consensus        69 -~vhGELs~Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet-IPn~l  145 (1255)
T KOG0444|consen   69 -SVHGELSDLPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET-IPNSL  145 (1255)
T ss_pred             -hhhhhhccchhhHHHhhhcc-ccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcccc-CCchH
Confidence             33456778889999999888 443  44445788899999999999999999999999999999999999984 554 4


Q ss_pred             ccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccC-CCCCCCCCCCEEECCCCCCC-CCCCccccCCcCC
Q 041976          261 LGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEI-PDIFNLTQVSFFDLSNNQLA-GPIPSHGSRLQNL  338 (901)
Q Consensus       261 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L  338 (901)
                      +.+++.|-.|||++|++. .+|.-+..+.+|++|+|++|.+.-.. ..+-.+++|+.|.+++.+-+ ..+|.++..+.+|
T Consensus       146 finLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL  224 (1255)
T KOG0444|consen  146 FINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNL  224 (1255)
T ss_pred             HHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhh
Confidence            578999999999999998 67778899999999999999765321 12556778888888887533 3688999999999


Q ss_pred             cEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCC-CCCCCCEEEccCccCCCCCchhhhcccccCceecccCc
Q 041976          339 VLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF-PSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNN  417 (901)
Q Consensus       339 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  417 (901)
                      ..+|++.|.+. ..|+.+.++++|+.|+|++|+++...... ...+|+.|+++.|+++ .+|..+..+++|+.|.+.+|+
T Consensus       225 ~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~Nk  302 (1255)
T KOG0444|consen  225 RDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNK  302 (1255)
T ss_pred             hhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCc
Confidence            99999999998 88999999999999999999998654333 5578999999999998 889999999999999999998


Q ss_pred             CCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCccc
Q 041976          418 FSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKID  492 (901)
Q Consensus       418 l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~  492 (901)
                      ++-..-|..++.+.+|+++..++|.+....  +..+.+++|+.|.++.|++..+|+.+.-++.|+.||+..|.-.
T Consensus       303 L~FeGiPSGIGKL~~Levf~aanN~LElVP--EglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  303 LTFEGIPSGIGKLIQLEVFHAANNKLELVP--EGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             ccccCCccchhhhhhhHHHHhhccccccCc--hhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCc
Confidence            765544688999999999999999886433  3344789999999999999999999999999999999999755

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=1.1e-30  Score=274.66  Aligned_cols=371  Identities=23%  Similarity=0.260  Sum_probs=304.3

Q ss_pred             cCCCCCceeeCCCCcCC-CCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCC
Q 041976          129 SRFRNLTHFSLSDSNIN-CKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSL  207 (901)
Q Consensus       129 ~~l~~L~~L~Ls~~~~~-~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l  207 (901)
                      +-++..|-.|+++|.|+ +.+|.++..+              ++++.|.|....+. .+|..+++|.+|++|.+++| .+
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qM--------------t~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN-~L   67 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQM--------------TQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHN-QL   67 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHh--------------hheeEEEechhhhh-hChHHHHHHhhhhhhhhhhh-hh
Confidence            44666788899999999 4699999988              99999999998876 78999999999999999999 77


Q ss_pred             CccCCCCCCCCCcceeecCCCCCc--cCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccc
Q 041976          208 AGKFPANNWTSPIEYLDVSETSFS--ELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSL  285 (901)
Q Consensus       208 ~~~~~~~~~~~~L~~L~Ls~~~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l  285 (901)
                      ......++.++.||.+++..|++.  .+|+.|..+..|+.|||++|++. +.|..+..-+++-+|+|++|+|..+...-|
T Consensus        68 ~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lf  146 (1255)
T KOG0444|consen   68 ISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLF  146 (1255)
T ss_pred             HhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHH
Confidence            766666778899999999999987  78999999999999999999987 689999999999999999999985544567


Q ss_pred             cCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCc-ccCChhhcCCCCCcE
Q 041976          286 SNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFS-GTIPSWLFSLPLLEY  364 (901)
Q Consensus       286 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~  364 (901)
                      -+++.|-+||||+|++...+|.+..+..|++|+|++|.+.-.--..+..+++|++|.+++.+-+ ..+|..+..+.+|..
T Consensus       147 inLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~d  226 (1255)
T KOG0444|consen  147 INLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRD  226 (1255)
T ss_pred             HhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhh
Confidence            7899999999999999988777999999999999999876444445567788889999887643 357888889999999


Q ss_pred             EEccCCccccccCCC-CCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCcc
Q 041976          365 VRLSDNQLSGHIDEF-PSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSL  443 (901)
Q Consensus       365 L~L~~n~l~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l  443 (901)
                      ++++.|.+...+... .+++|+.|+|++|+|+. +....+.-.+|++|+++.|+++..  |+.+-.+++|+.|.+.+|++
T Consensus       227 vDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~L--P~avcKL~kL~kLy~n~NkL  303 (1255)
T KOG0444|consen  227 VDLSENNLPIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVL--PDAVCKLTKLTKLYANNNKL  303 (1255)
T ss_pred             ccccccCCCcchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccc--hHHHhhhHHHHHHHhccCcc
Confidence            999999887554433 77889999999998873 344556667889999999998877  46788888999999999888


Q ss_pred             ccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCccc
Q 041976          444 SLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQ  522 (901)
Q Consensus       444 ~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~  522 (901)
                      +..........+.+|+.+...+|.+.-+|+.+..|..|+.|.++.|++. .+|+.+  .-++.|+.||+..|.--.+++
T Consensus       304 ~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaI--HlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  304 TFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAI--HLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             cccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee-echhhh--hhcCCcceeeccCCcCccCCC
Confidence            8766655555677788888888888888888888888888888888876 567666  445677777777776555544

>PLN03210 Resistant to P

Probab=99.89  E-value=3e-21  Score=240.59  Aligned_cols=314  Identities=19%  Similarity=0.231  Sum_probs=221.6

Q ss_pred             CCeEEEEEcCCCCCCC-CCCCCcccccCccCceEeCCCCCCCC-----CcCCccccCCC-CCceeeCCCCcCCCCCCccc
Q 041976           80 TGNVISLDLSCSWLHG-NIPTNTSLFHLLHLQTLNLSHNDFDY-----SEISSGFSRFR-NLTHFSLSDSNINCKIPYEI  152 (901)
Q Consensus        80 ~~~v~~l~L~~~~~~g-~~~~~~~l~~l~~L~~L~Ls~n~~~~-----~~~~~~l~~l~-~L~~L~Ls~~~~~~~~p~~l  152 (901)
                      +.+|.++.+.-..+.. .+.. .++..+++|+.|.+..+....     ..+|..+..++ +|+.|++.++.+. .+|..+
T Consensus       531 ~~~v~~i~l~~~~~~~~~i~~-~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f  608 (1153)
T PLN03210        531 TKKVLGITLDIDEIDELHIHE-NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF  608 (1153)
T ss_pred             cceeeEEEeccCccceeeecH-HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC
Confidence            3567777665444332 1222 267889999999997664321     13677777764 6999999998775 778766


Q ss_pred             ccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCC-Cc
Q 041976          153 SFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETS-FS  231 (901)
Q Consensus       153 ~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~-l~  231 (901)
                       ..              .+|++|+++++.+. .++..+..+++|+.|+|+++ .....+|.+..+++|++|++++|. +.
T Consensus       609 -~~--------------~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~-~~l~~ip~ls~l~~Le~L~L~~c~~L~  671 (1153)
T PLN03210        609 -RP--------------ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGS-KNLKEIPDLSMATNLETLKLSDCSSLV  671 (1153)
T ss_pred             -Cc--------------cCCcEEECcCcccc-ccccccccCCCCCEEECCCC-CCcCcCCccccCCcccEEEecCCCCcc
Confidence             34              78999999999876 56777888999999999998 555778888889999999999875 66


Q ss_pred             cCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCC
Q 041976          232 ELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNL  311 (901)
Q Consensus       232 ~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l  311 (901)
                      .+|..++++++|++|++++|...+.+|..+ ++++|+.|++++|.....+|..   ..+|++|++++|.+.. +|....+
T Consensus       672 ~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~~l  746 (1153)
T PLN03210        672 ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNLRL  746 (1153)
T ss_pred             ccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccccc
Confidence            889999999999999999987777788766 7899999999998766566643   4578899999998764 4554467


Q ss_pred             CCCCEEECCCCCCC-------CCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCC-CCCC
Q 041976          312 TQVSFFDLSNNQLA-------GPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF-PSKS  383 (901)
Q Consensus       312 ~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~  383 (901)
                      ++|++|.+.++...       ...+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|.. .+++
T Consensus       747 ~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~s  826 (1153)
T PLN03210        747 ENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLES  826 (1153)
T ss_pred             cccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccc
Confidence            88888888765421       111222233467888888888777778888888888888888887544334332 4556


Q ss_pred             CCEEEccCccCCCCCchhhhcccccCceecccCcCCC
Q 041976          384 LQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSG  420 (901)
Q Consensus       384 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  420 (901)
                      |+.|++++|.....+|..   ..+|+.|+|++|.++.
T Consensus       827 L~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~  860 (1153)
T PLN03210        827 LESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE  860 (1153)
T ss_pred             cCEEECCCCCcccccccc---ccccCEeECCCCCCcc
Confidence            666666655433333321   2344555555555443

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.88  E-value=2.8e-21  Score=240.74  Aligned_cols=285  Identities=24%  Similarity=0.233  Sum_probs=198.0

Q ss_pred             CCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEc
Q 041976          217 TSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDL  296 (901)
Q Consensus       217 ~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  296 (901)
                      ..+|++|+++++.+..+|..+..+++|++|+++++...+.+| .+..+++|++|++++|.....+|..++.+++|++|++
T Consensus       610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L  688 (1153)
T PLN03210        610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM  688 (1153)
T ss_pred             ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence            455666666666666666777777777777777766555555 3666777777777777666667777777777777777


Q ss_pred             cCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccc-
Q 041976          297 SSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGH-  375 (901)
Q Consensus       297 s~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-  375 (901)
                      ++|...+.+|...++++|+.|++++|...+.+|..   ..+|++|++++|.+. .+|..+ .+++|++|.+.++..... 
T Consensus       689 ~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~  763 (1153)
T PLN03210        689 SRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLW  763 (1153)
T ss_pred             CCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhcc
Confidence            77655555555336777777777777655455532   356777778777765 455443 567777777766432111 


Q ss_pred             ------cC--CCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCcccccc
Q 041976          376 ------ID--EFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGN  447 (901)
Q Consensus       376 ------~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~  447 (901)
                            .+  ...+++|+.|++++|...+.+|..++++++|+.|++++|...+..|. .. .+++|+.|++++|......
T Consensus       764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~-~~-~L~sL~~L~Ls~c~~L~~~  841 (1153)
T PLN03210        764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT-GI-NLESLESLDLSGCSRLRTF  841 (1153)
T ss_pred             ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC-CC-CccccCEEECCCCCccccc
Confidence                  11  11346899999999988778999999999999999999864444442 22 7899999999988543221


Q ss_pred             ccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCC
Q 041976          448 TFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHN  515 (901)
Q Consensus       448 ~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n  515 (901)
                          ....++++.|++++|.++.+|.++..+++|+.|++++|+-...+|..+  ..++.|+.+++++|
T Consensus       842 ----p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~--~~L~~L~~L~l~~C  903 (1153)
T PLN03210        842 ----PDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNI--SKLKHLETVDFSDC  903 (1153)
T ss_pred             ----cccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccc--ccccCCCeeecCCC
Confidence                123468999999999999999999999999999999976555566554  45566666666655

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=1.9e-24  Score=217.36  Aligned_cols=85  Identities=26%  Similarity=0.297  Sum_probs=60.4

Q ss_pred             CccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEcc
Q 041976          597 SLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLR  676 (901)
Q Consensus       597 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~  676 (901)
                      +|++|+|++|+|+++-+.+|.+...+++|.|..|++.......|.++..|++|+|.+|+|+...|.+|..+.+|.+|++-
T Consensus       275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~  354 (498)
T KOG4237|consen  275 NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL  354 (498)
T ss_pred             cceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence            67777777777776667777777777777777777766666667777777777777777777777777777777777777


Q ss_pred             CCcCc
Q 041976          677 SNKFH  681 (901)
Q Consensus       677 ~n~~~  681 (901)
                      .|++.
T Consensus       355 ~Np~~  359 (498)
T KOG4237|consen  355 SNPFN  359 (498)
T ss_pred             cCccc
Confidence            76663

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=5.7e-21  Score=219.85  Aligned_cols=262  Identities=23%  Similarity=0.294  Sum_probs=158.2

Q ss_pred             CCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCcc
Q 041976          480 ELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQF  559 (901)
Q Consensus       480 ~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l  559 (901)
                      .-..|+++++.++ .+|..+.    ..++.|++++|+++.++.                      .+++|++|++++|++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~----~~L~~L~L~~N~Lt~LP~----------------------lp~~Lk~LdLs~N~L  254 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP----AHITTLVIPDNNLTSLPA----------------------LPPELRTLEVSGNQL  254 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh----cCCCEEEccCCcCCCCCC----------------------CCCCCcEEEecCCcc
Confidence            3456677777666 4555441    245666666665555442                      345555666666655


Q ss_pred             ccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCcc
Q 041976          560 TGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQS  639 (901)
Q Consensus       560 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  639 (901)
                      +.. |..   .++|+.|++++|.++ .+|.    .+++|+.|++++|+++. +|.   .+++|+.|++++|++++. |..
T Consensus       255 tsL-P~l---p~sL~~L~Ls~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~l  320 (788)
T PRK15387        255 TSL-PVL---PPGLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PAL  320 (788)
T ss_pred             Ccc-cCc---ccccceeeccCCchh-hhhh----chhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CCC
Confidence            532 221   245666666666665 3332    12356666666666653 332   234566666666666642 322


Q ss_pred             ccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhH
Q 041976          640 LVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLN  719 (901)
Q Consensus       640 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~  719 (901)
                         ..+|+.|++++|++++ +|..   ..+|++|++++|++++ +|..     .++|+.|++++|.+.+ +|..      
T Consensus       321 ---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l-----p~~L~~L~Ls~N~L~~-LP~l------  380 (788)
T PRK15387        321 ---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL-----PSELYKLWAYNNRLTS-LPAL------  380 (788)
T ss_pred             ---cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC-----Ccccceehhhcccccc-Cccc------
Confidence               1345566666666654 2321   1356677777777653 2221     2456667777776653 3320      


Q ss_pred             hhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCC
Q 041976          720 AMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQI  799 (901)
Q Consensus       720 ~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~  799 (901)
                                                            +..|+.|++++|+|++ +|..   .++|+.|++++|++++ +
T Consensus       381 --------------------------------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-I  417 (788)
T PRK15387        381 --------------------------------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-L  417 (788)
T ss_pred             --------------------------------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-C
Confidence                                                  2456778888888875 4433   3578888999998885 5


Q ss_pred             CccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCC
Q 041976          800 PSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPH  849 (901)
Q Consensus       800 p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~  849 (901)
                      |..+   .+|+.|++++|+|+ .+|..+..+++|+.|+|++|+|+|.+|.
T Consensus       418 P~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        418 PMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             Ccch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            5433   46778899999987 5788888888999999999999887765

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.84  E-value=5.4e-23  Score=206.92  Aligned_cols=291  Identities=22%  Similarity=0.239  Sum_probs=222.5

Q ss_pred             eeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCC-Cccc
Q 041976          531 LDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRN-NRLN  609 (901)
Q Consensus       531 L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~-n~l~  609 (901)
                      ++.++-.++......|+....+++..|+|+.+.+..|..+++|+.|||++|.|+..-|++|.++. +|.+|-+.+ |+|+
T Consensus        51 VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~-~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   51 VDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA-SLLSLVLYGNNKIT  129 (498)
T ss_pred             EEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhH-hhhHHHhhcCCchh
Confidence            34444444544455578889999999999999999999999999999999999988899998887 666666555 9999


Q ss_pred             ccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCC
Q 041976          610 GSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEP  689 (901)
Q Consensus       610 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~  689 (901)
                      ......|+++.+++.|.+.-|++..+..+.|..+++|..|.+.+|.+..+.-..|..+.+++++.+..|++...      
T Consensus       130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd------  203 (498)
T KOG4237|consen  130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD------  203 (498)
T ss_pred             hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc------
Confidence            88889999999999999999999999999999999999999999999877777899999999999999996421      


Q ss_pred             CCCCCCCc-----------------EEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhH
Q 041976          690 KESFPKLR-----------------ILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEI  752 (901)
Q Consensus       690 ~~~l~~L~-----------------~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~  752 (901)
                       ++++.+.                 -..+.++++...-+..+...+.++..--.+.+.         .+.      ....
T Consensus       204 -CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~---------~d~------~cP~  267 (498)
T KOG4237|consen  204 -CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDF---------PDS------ICPA  267 (498)
T ss_pred             -cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccC---------cCC------cChH
Confidence             2333322                 222233333322223332222222111111110         000      0011


Q ss_pred             HHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCC
Q 041976          753 EMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTS  832 (901)
Q Consensus       753 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~  832 (901)
                      .-++.+++|+.|+|++|.+++.-+.+|.++..+++|.|..|+|.......|.++..|+.|+|.+|+|+...|.+|..+.+
T Consensus       268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~  347 (498)
T KOG4237|consen  268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS  347 (498)
T ss_pred             HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence            22456889999999999999988999999999999999999998888888999999999999999999999999999999


Q ss_pred             CCeeeCCCCcCc
Q 041976          833 LSVLNLSHNRLD  844 (901)
Q Consensus       833 L~~L~Ls~N~l~  844 (901)
                      |..|+|-.|++.
T Consensus       348 l~~l~l~~Np~~  359 (498)
T KOG4237|consen  348 LSTLNLLSNPFN  359 (498)
T ss_pred             eeeeehccCccc
Confidence            999999988863

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=2.2e-20  Score=215.08  Aligned_cols=264  Identities=23%  Similarity=0.320  Sum_probs=133.9

Q ss_pred             cEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccc
Q 041976          459 SYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLL  538 (901)
Q Consensus       459 ~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l  538 (901)
                      ..|++++++++.+|..+.  ++|+.|++.+|+++. +|..     .++|++|++++|+++.++.. .++|+.|++++|.+
T Consensus       204 ~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~-LP~l-----p~~Lk~LdLs~N~LtsLP~l-p~sL~~L~Ls~N~L  274 (788)
T PRK15387        204 AVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPAL-----PPELRTLEVSGNQLTSLPVL-PPGLLELSIFSNPL  274 (788)
T ss_pred             cEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCC-CCCC-----CCCCcEEEecCCccCcccCc-ccccceeeccCCch
Confidence            345555555555555443  256666666666653 3321     25566666666666655432 23444444444444


Q ss_pred             cCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccC
Q 041976          539 QGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAE  618 (901)
Q Consensus       539 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  618 (901)
                      .. +|..+.+|+.|++++|+++.. |.   ..++|+.|++++|.++ .+|.    .+..|+.|++++|.+++ +      
T Consensus       275 ~~-Lp~lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~-~Lp~----lp~~L~~L~Ls~N~L~~-L------  337 (788)
T PRK15387        275 TH-LPALPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTS-L------  337 (788)
T ss_pred             hh-hhhchhhcCEEECcCCccccc-cc---cccccceeECCCCccc-cCCC----CcccccccccccCcccc-c------
Confidence            32 222234444455555544422 21   1234444455554444 2222    11234444444444442 2      


Q ss_pred             CCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcE
Q 041976          619 SNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRI  698 (901)
Q Consensus       619 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~  698 (901)
                                        |..   ..+|++|++++|+++.. |..   .++|+.|++++|.+.+ +|..     ..+|+.
T Consensus       338 ------------------P~l---p~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~-LP~l-----~~~L~~  386 (788)
T PRK15387        338 ------------------PTL---PSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTS-LPAL-----PSGLKE  386 (788)
T ss_pred             ------------------ccc---ccccceEecCCCccCCC-CCC---Ccccceehhhcccccc-Cccc-----ccccce
Confidence                              211   12444555555544432 211   1344555555555542 2221     235666


Q ss_pred             EEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchh
Q 041976          699 LDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQV  778 (901)
Q Consensus       699 L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  778 (901)
                      |++++|++++ +|..                                            ++.|+.|++++|++++ +|..
T Consensus       387 LdLs~N~Lt~-LP~l--------------------------------------------~s~L~~LdLS~N~Lss-IP~l  420 (788)
T PRK15387        387 LIVSGNRLTS-LPVL--------------------------------------------PSELKELMVSGNRLTS-LPML  420 (788)
T ss_pred             EEecCCcccC-CCCc--------------------------------------------ccCCCEEEccCCcCCC-CCcc
Confidence            6666666653 3310                                            2345667777777764 4443


Q ss_pred             hhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcC
Q 041976          779 IGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTS  829 (901)
Q Consensus       779 l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~  829 (901)
                      .   .+|+.|++++|+|+ .+|..+.++++|+.|+|++|++++..|..+..
T Consensus       421 ~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        421 P---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             h---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            2   35667788888877 56777777888888888888888777666543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=6.7e-19  Score=204.49  Aligned_cols=341  Identities=19%  Similarity=0.245  Sum_probs=217.2

Q ss_pred             CCCCCHHHHHHHHHhhhcCcCCCCCccccccCCCcCCC----CCCCCCCcCccc----------------eeecCCCCeE
Q 041976           24 AKHCPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMIS----WKKDTNCCSWDG----------------VTCDMATGNV   83 (901)
Q Consensus        24 ~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~l~~----w~~~~~~c~w~g----------------v~c~~~~~~v   83 (901)
                      +.+-.++|...+++..+.+..|.           ...+    |..++++|.-+.                |.|.  .+.|
T Consensus        57 ~~~~~~~~~~~~~~~~~~l~~p~-----------~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~v  123 (754)
T PRK15370         57 PETASPEEIKSKFECLRMLAFPA-----------YADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGG--GKSV  123 (754)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCc-----------hhhccccccCCCCcccccCCcchhhheeeecCCceEEecC--CCcc
Confidence            34567889999999999997654           4455    998889997655                5564  3567


Q ss_pred             EEEEcCCCCCCCCCCCCcccccCccCceEeCCCCCCCCC--cCCccc-----cCCCCCceeeCCCCcCCCCCCccccccc
Q 041976           84 ISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYS--EISSGF-----SRFRNLTHFSLSDSNINCKIPYEISFLK  156 (901)
Q Consensus        84 ~~l~L~~~~~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~--~~~~~l-----~~l~~L~~L~Ls~~~~~~~~p~~l~~l~  156 (901)
                      +.+...+..............+....- =+=..+.-.+.  .--..+     +-..+...|+++++.++ .+|..+.   
T Consensus       124 t~l~~~g~~~~~~~~~~~~~~~~~~~w-~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip---  198 (754)
T PRK15370        124 TYTRVTESEQASSASGSKDAVNYELIW-SEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP---  198 (754)
T ss_pred             cccccccccccccCCCCCChhhHHHHH-HHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc---
Confidence            777665533222111000000000000 00000000000  000001     11245667777777766 4564432   


Q ss_pred             ccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCcc
Q 041976          157 MSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDS  236 (901)
Q Consensus       157 ~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~  236 (901)
                                   +.|+.|++++|.++ .+|..+.  .+|++|++++| .++ .+|. ....+|+.|++++|.+..+|..
T Consensus       199 -------------~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N-~Lt-sLP~-~l~~~L~~L~Ls~N~L~~LP~~  259 (754)
T PRK15370        199 -------------EQITTLILDNNELK-SLPENLQ--GNIKTLYANSN-QLT-SIPA-TLPDTIQEMELSINRITELPER  259 (754)
T ss_pred             -------------cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCC-ccc-cCCh-hhhccccEEECcCCccCcCChh
Confidence                         66778888888777 4555443  47888888887 665 3442 1234688888888888888876


Q ss_pred             ccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCE
Q 041976          237 IGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSF  316 (901)
Q Consensus       237 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~  316 (901)
                      +.  ++|++|++++|++. .+|..+.  ++|+.|++++|+++. +|..+.  .+|++|++++|.++...+.+.  ++|+.
T Consensus       260 l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~  329 (754)
T PRK15370        260 LP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTALPETLP--PGLKT  329 (754)
T ss_pred             Hh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccCCcccc--cccee
Confidence            64  47888888888887 4676554  478888888888873 554443  468888888888875433232  57888


Q ss_pred             EECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCC
Q 041976          317 FDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQG  396 (901)
Q Consensus       317 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~  396 (901)
                      |++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+  .++|+.|++++|.++..++ .....|+.|++++|+++ 
T Consensus       330 L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~-~l~~sL~~LdLs~N~L~-  401 (754)
T PRK15370        330 LEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPE-NLPAALQIMQASRNNLV-  401 (754)
T ss_pred             ccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCH-hHHHHHHHHhhccCCcc-
Confidence            8888888874 665553  68889999998887 456554  3678899999988875433 33346888999999887 


Q ss_pred             CCchhhh----cccccCceecccCcCC
Q 041976          397 SIPSSIF----ELVNLTDLQLDSNNFS  419 (901)
Q Consensus       397 ~~~~~~~----~l~~L~~L~L~~n~l~  419 (901)
                      .+|..+.    .++.+..+++.+|.+.
T Consensus       402 ~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        402 RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            4555443    4577889999999886

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=1e-18  Score=203.05  Aligned_cols=57  Identities=21%  Similarity=0.364  Sum_probs=27.7

Q ss_pred             ceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCcc----ccCCCCCCEEeCCCCccC
Q 041976          760 VFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSS----LGNLAKLESLDLSSNNVA  820 (901)
Q Consensus       760 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~L~~L~~L~Ls~N~l~  820 (901)
                      .|+.|++++|.++. +|..+.  .+|+.|++++|++++ +|..    ++.++.+..|++.+|.++
T Consensus       368 ~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        368 TITTLDVSRNALTN-LPENLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence            44555555555552 333332  245555566665552 2322    223355556666666554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.68  E-value=2.1e-18  Score=187.28  Aligned_cols=84  Identities=20%  Similarity=0.280  Sum_probs=39.2

Q ss_pred             cceeEEEccccccccccchhhh-c----cCCCCeEeCCCCcCCC----CCCccccCCCCCCEEeCCCCccCCC----CCc
Q 041976          759 TVFTTIDFSSNGFDGEISQVIG-K----LHSLRLLNLSHNHFTG----QIPSSLGNLAKLESLDLSSNNVAGK----IPK  825 (901)
Q Consensus       759 ~~L~~L~Ls~N~l~~~~~~~l~-~----l~~L~~L~Ls~N~l~~----~~p~~l~~L~~L~~L~Ls~N~l~~~----~p~  825 (901)
                      ++|++|++++|.+++.....+. .    .+.|++|++++|.++.    .+...+..+++|+.+|+++|.++..    ...
T Consensus       221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~  300 (319)
T cd00116         221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE  300 (319)
T ss_pred             CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence            4455555555555542222221 1    2455555555555541    1223344445555555555555533    222


Q ss_pred             CCcCC-CCCCeeeCCCCc
Q 041976          826 PLTSL-TSLSVLNLSHNR  842 (901)
Q Consensus       826 ~l~~l-~~L~~L~Ls~N~  842 (901)
                      .+... +.|+++++.+|+
T Consensus       301 ~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         301 SLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHhhcCCchhhcccCCCC
Confidence            33333 455555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.66  E-value=6.9e-18  Score=183.25  Aligned_cols=61  Identities=23%  Similarity=0.296  Sum_probs=28.6

Q ss_pred             CCCCEEEccCccCCC----CCchhhhcccccCceecccCcCCCccch---hhhhhc-CCCcEEEccCCc
Q 041976          382 KSLQNIYLSNNRLQG----SIPSSIFELVNLTDLQLDSNNFSGIAEP---YMFAKL-IKLKYLYLSHNS  442 (901)
Q Consensus       382 ~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~l-~~L~~L~L~~n~  442 (901)
                      +.|++|++++|.+++    .+...+..+++|+.+++++|.+......   ..+... +.|+++++.+|+
T Consensus       250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            344444444444431    1223344445666666666666543210   122223 466666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=3e-18  Score=152.98  Aligned_cols=165  Identities=27%  Similarity=0.494  Sum_probs=131.8

Q ss_pred             ccccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCc
Q 041976          102 SLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCI  181 (901)
Q Consensus       102 ~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~  181 (901)
                      .+..+.+++.|.||+|.++.  +|+.+..+.+|+.|++++|++. ++|.+++.+              ++|++|+++-|+
T Consensus        28 gLf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie-~lp~~issl--------------~klr~lnvgmnr   90 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSISSL--------------PKLRILNVGMNR   90 (264)
T ss_pred             cccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhh-hcChhhhhc--------------hhhhheecchhh
Confidence            57788889999999999887  7888999999999999999987 789999998              999999999888


Q ss_pred             CCCCCccccCCCCCCCEEeCCCCCCCC-ccCCC-CCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCc
Q 041976          182 LQGNFPINIFHLPNPQMIRLSQNPSLA-GKFPA-NNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPA  259 (901)
Q Consensus       182 ~~~~~p~~l~~l~~L~~L~L~~n~~l~-~~~~~-~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~  259 (901)
                      +. ..|..|+.++.|+.|||.+| ++. ..+|. +-.++.|+.|.++.|.++-+|..++++++|+.|.+..|.+. .+|.
T Consensus        91 l~-~lprgfgs~p~levldltyn-nl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpk  167 (264)
T KOG0617|consen   91 LN-ILPRGFGSFPALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPK  167 (264)
T ss_pred             hh-cCccccCCCchhhhhhcccc-ccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcH
Confidence            76 78899999999999999998 555 44553 45677778888888888888877888888887777777766 4677


Q ss_pred             cccCCCCCCEEECCCCcCCCCCCccccC
Q 041976          260 SLGNLTQLTLLHLMHNNFSGHIPSSLSN  287 (901)
Q Consensus       260 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~  287 (901)
                      .++.+++|++|.+.+|+++ .+|..+++
T Consensus       168 eig~lt~lrelhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  168 EIGDLTRLRELHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             HHHHHHHHHHHhcccceee-ecChhhhh
Confidence            7777777777777777766 44444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=1.6e-17  Score=148.34  Aligned_cols=157  Identities=25%  Similarity=0.407  Sum_probs=98.8

Q ss_pred             CCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEE
Q 041976          215 NWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYL  294 (901)
Q Consensus       215 ~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  294 (901)
                      -.+.+++.|.||+|+++.+|..+..+++|+.|++++|++. .+|.+++.+++|+.|+++-|++. ..|..|+.++.|+.|
T Consensus        30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            3344555566666666666666666666666666666665 45666666666666666666665 566666666666666


Q ss_pred             EccCCcCcc-cCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCcc
Q 041976          295 DLSSNSFFG-EIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQL  372 (901)
Q Consensus       295 ~Ls~n~l~~-~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  372 (901)
                      |+.+|++.. ..|+ ++.++.|+.|++++|.+. .+|..++++++|+.|.+..|.+- ..|..++.+++|++|.+.+|++
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence            666666543 3344 556666666666666665 56666666666666666666665 4566666666666666666666


Q ss_pred             ccc
Q 041976          373 SGH  375 (901)
Q Consensus       373 ~~~  375 (901)
                      +..
T Consensus       186 ~vl  188 (264)
T KOG0617|consen  186 TVL  188 (264)
T ss_pred             eec
Confidence            533

>PLN03150 hypothetical protein; Provisional

Probab=99.54  E-value=4.1e-14  Score=164.60  Aligned_cols=154  Identities=27%  Similarity=0.408  Sum_probs=130.3

Q ss_pred             CCCCHHHHHHHHHhhhcCcCCCCCccccccCCCcCCCCCCCCCCc----CccceeecC--CC--CeEEEEEcCCCCCCCC
Q 041976           25 KHCPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKDTNCC----SWDGVTCDM--AT--GNVISLDLSCSWLHGN   96 (901)
Q Consensus        25 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c----~w~gv~c~~--~~--~~v~~l~L~~~~~~g~   96 (901)
                      ..+.++|.+||+++|+.+..+.            ..+|.. +.||    .|.||.|..  ..  .+|+.|+|+++.+.|.
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~------------~~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~  433 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPL------------RFGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGF  433 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCcc------------cCCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCCCcccc
Confidence            4567789999999999986432            237963 4443    799999953  22  2699999999999999


Q ss_pred             CCCCcccccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEE
Q 041976           97 IPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLS  176 (901)
Q Consensus        97 ~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~  176 (901)
                      +++  .+..+++|++|+|++|.+.+. +|..++.+++|++|+|++|.++|.+|..++.+              ++|++|+
T Consensus       434 ip~--~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L--------------~~L~~L~  496 (623)
T PLN03150        434 IPN--DISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQL--------------TSLRILN  496 (623)
T ss_pred             CCH--HHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcC--------------CCCCEEE
Confidence            998  899999999999999999987 99999999999999999999999999999999              9999999


Q ss_pred             cCCCcCCCCCccccCCC-CCCCEEeCCCCCCCC
Q 041976          177 LSDCILQGNFPINIFHL-PNPQMIRLSQNPSLA  208 (901)
Q Consensus       177 Ls~~~~~~~~p~~l~~l-~~L~~L~L~~n~~l~  208 (901)
                      |++|.++|.+|..++.. .++..+++.+|+.+.
T Consensus       497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             CcCCcccccCChHHhhccccCceEEecCCcccc
Confidence            99999999999988764 577888998884333

>PLN03150 hypothetical protein; Provisional

Probab=99.33  E-value=2.5e-12  Score=149.84  Aligned_cols=118  Identities=40%  Similarity=0.668  Sum_probs=107.1

Q ss_pred             ceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCC
Q 041976          760 VFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLS  839 (901)
Q Consensus       760 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  839 (901)
                      .++.|+|++|.++|.+|..++.+++|+.|+|++|.+++.+|..++.+++|+.|||++|++++.+|+.+..+++|++|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCccCCCCCC--CCCCcccccccCCcCCCCCCCCCCCC
Q 041976          840 HNRLDGPIPHGP--QFNTFQEDSYIGNLGLCGFPLTKKCG  877 (901)
Q Consensus       840 ~N~l~g~iP~~~--~~~~~~~~~~~~n~~lcg~~l~~~c~  877 (901)
                      +|+++|.+|...  .+.......+.+|+++||.|-...|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999752  22334566789999999988667774

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.06  E-value=2.3e-10  Score=127.91  Aligned_cols=200  Identities=33%  Similarity=0.426  Sum_probs=135.7

Q ss_pred             eEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCC-CccEEEcCCCcCCCCCccc
Q 041976          111 TLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSS-SLTSLSLSDCILQGNFPIN  189 (901)
Q Consensus       111 ~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~-~L~~L~Ls~~~~~~~~p~~  189 (901)
                      .++++.+.+..  -+..+..++.++.|++.++.++ .+|...+.+              . +|+.|++++|.+. .+|..
T Consensus        97 ~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~--------------~~nL~~L~l~~N~i~-~l~~~  158 (394)
T COG4886          97 SLDLNLNRLRS--NISELLELTNLTSLDLDNNNIT-DIPPLIGLL--------------KSNLKELDLSDNKIE-SLPSP  158 (394)
T ss_pred             eeecccccccc--CchhhhcccceeEEecCCcccc-cCccccccc--------------hhhcccccccccchh-hhhhh
Confidence            45666665533  1233445566777777777665 555555544              4 6777777777665 34456


Q ss_pred             cCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCE
Q 041976          190 IFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTL  269 (901)
Q Consensus       190 l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~  269 (901)
                      ++.+++|+.|++++| .+....+.....+.|+.|++++|.+..+|..+.....|++|.+++|.+. ..+..+.++.++..
T Consensus       159 ~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~  236 (394)
T COG4886         159 LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSG  236 (394)
T ss_pred             hhccccccccccCCc-hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccc
Confidence            677777777777777 5543333233677788888888888888877777777888888888533 35566777788888


Q ss_pred             EECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccc
Q 041976          270 LHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHG  332 (901)
Q Consensus       270 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  332 (901)
                      +.+.+|++. .++..++.+.++++|++++|.++.... ++.+.+++.|+++++.+....+...
T Consensus       237 l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         237 LELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             cccCCceee-eccchhccccccceecccccccccccc-ccccCccCEEeccCccccccchhhh
Confidence            888877776 336677788888888888888875444 7778888888888888776555443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.06  E-value=7.2e-12  Score=133.16  Aligned_cols=175  Identities=27%  Similarity=0.363  Sum_probs=103.3

Q ss_pred             cCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCC
Q 041976          105 HLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQG  184 (901)
Q Consensus       105 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~  184 (901)
                      .+.--...||+.|.+..  +|..+..|-.|+.+.|..|.+- .+|..++++              ..|.+|||+.|+++ 
T Consensus        73 ~ltdt~~aDlsrNR~~e--lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L--------------~~lt~l~ls~NqlS-  134 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFSE--LPEEACAFVSLESLILYHNCIR-TIPEAICNL--------------EALTFLDLSSNQLS-  134 (722)
T ss_pred             cccchhhhhcccccccc--CchHHHHHHHHHHHHHHhccce-ecchhhhhh--------------hHHHHhhhccchhh-
Confidence            34455566777777765  6666777777777777666654 566666666              66777777777665 


Q ss_pred             CCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCC
Q 041976          185 NFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNL  264 (901)
Q Consensus       185 ~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l  264 (901)
                      .+|..+..|+ |+.|-+++| +++..-+.++....|..||.+.|.+..+|..++.+.+|+.|.+..|++. .+|..+..|
T Consensus       135 ~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L  211 (722)
T KOG0532|consen  135 HLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL  211 (722)
T ss_pred             cCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC
Confidence            4455554443 555555555 4443333344555555556666666666666666666666666655554 344445433


Q ss_pred             CCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCc
Q 041976          265 TQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFF  302 (901)
Q Consensus       265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  302 (901)
                       .|..||++.|+++ .+|-.|.+|+.|++|-|.+|.+.
T Consensus       212 -pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  212 -PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             -ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence             2555666666555 55555666666666666655555

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.05  E-value=5.4e-12  Score=134.10  Aligned_cols=175  Identities=29%  Similarity=0.402  Sum_probs=101.5

Q ss_pred             CCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEcc
Q 041976          218 SPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLS  297 (901)
Q Consensus       218 ~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  297 (901)
                      .--...|++.|++.++|..+..+..|+.+.+..|.+. .+|.+++++..|+.||++.|+++ .+|..+..|+ |+.|-++
T Consensus        75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s  151 (722)
T KOG0532|consen   75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS  151 (722)
T ss_pred             cchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence            3345566666777766666666666666666666655 45666666666666666666665 4455555443 5555555


Q ss_pred             CCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccC
Q 041976          298 SNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHID  377 (901)
Q Consensus       298 ~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  377 (901)
                      +|+++...++++.+..|.+||.+.|.+. .+|..                        ++.+.+|+.|.+..|++....+
T Consensus       152 NNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsq------------------------l~~l~slr~l~vrRn~l~~lp~  206 (722)
T KOG0532|consen  152 NNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQ------------------------LGYLTSLRDLNVRRNHLEDLPE  206 (722)
T ss_pred             cCccccCCcccccchhHHHhhhhhhhhh-hchHH------------------------hhhHHHHHHHHHhhhhhhhCCH
Confidence            5555543333444445555555555444 34444                        4444444444444444443333


Q ss_pred             CCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCc
Q 041976          378 EFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGI  421 (901)
Q Consensus       378 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  421 (901)
                      +...-.|..||++.|++. .+|-.|.+|..|++|.|.+|.+...
T Consensus       207 El~~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  207 ELCSLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             HHhCCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence            333334556666666665 6777788888888888888877754

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.04  E-value=2.2e-10  Score=127.92  Aligned_cols=174  Identities=34%  Similarity=0.439  Sum_probs=89.0

Q ss_pred             CCcceeecCCCCCccCCccccCCC-CcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEc
Q 041976          218 SPIEYLDVSETSFSELPDSIGNLK-LLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDL  296 (901)
Q Consensus       218 ~~L~~L~Ls~~~l~~lp~~l~~l~-~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  296 (901)
                      +.++.|++.++.+.++|......+ +|+.|++++|.+. .+|..++.+++|+.|++++|+++ .+|...+..++|+.|++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence            455555555555555555555553 5666666666554 33344555566666666666555 33433335555666666


Q ss_pred             cCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCcccccc
Q 041976          297 SSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHI  376 (901)
Q Consensus       297 s~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  376 (901)
                      ++|++....+.+.....|+++.+++|++. ..+..+..+.++..+.+.+|++.. .+..++.++.+++|++++|.++...
T Consensus       194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~  271 (394)
T COG4886         194 SGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSIS  271 (394)
T ss_pred             cCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceeccccccccccc
Confidence            66655533332334444555555555322 244445555555555555555442 2444555555555555555554433


Q ss_pred             CCCCCCCCCEEEccCccCC
Q 041976          377 DEFPSKSLQNIYLSNNRLQ  395 (901)
Q Consensus       377 ~~~~~~~L~~L~L~~n~l~  395 (901)
                      ......+++.+++++|.+.
T Consensus       272 ~~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         272 SLGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             cccccCccCEEeccCcccc
Confidence            3223444444444444444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=3e-11  Score=124.72  Aligned_cols=208  Identities=27%  Similarity=0.315  Sum_probs=115.2

Q ss_pred             cCCCCCCEEECCCCcCCCCCC--ccccCCCCCCEEEccCCcCcccCCC---CCCCCCCCEEECCCCCCCCCCCccc-cCC
Q 041976          262 GNLTQLTLLHLMHNNFSGHIP--SSLSNLVQLTYLDLSSNSFFGEIPD---IFNLTQVSFFDLSNNQLAGPIPSHG-SRL  335 (901)
Q Consensus       262 ~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~-~~l  335 (901)
                      .++.+|+...|.++.+. ..+  .....|++++.|||+.|-+....+.   +..+++|+.|+++.|++........ ..+
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            46778888888887765 323  3456678888888888766543332   4467777777777777653222111 133


Q ss_pred             cCCcEEECcCCcCcccC-ChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecc
Q 041976          336 QNLVLIRLNNNSFSGTI-PSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLD  414 (901)
Q Consensus       336 ~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  414 (901)
                      ++|+.|.++.|.++... ......+|+|+.|++..|                      ............+..|+.|+|+
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N----------------------~~~~~~~~~~~i~~~L~~LdLs  254 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN----------------------EIILIKATSTKILQTLQELDLS  254 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc----------------------cccceecchhhhhhHHhhcccc
Confidence            45555555555554221 112223444444444444                      2211222233445566667777


Q ss_pred             cCcCCCccchhhhhhcCCCcEEEccCCcccccccccc-----CCCCCCccEEecCCcCCCCCCh--hhccCCCCCEEeCC
Q 041976          415 SNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKI-----DSPFPKFSYLSLSACNISAFPR--FLRTQDELSYLDLS  487 (901)
Q Consensus       415 ~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-----~~~~~~L~~L~l~~~~l~~lp~--~l~~~~~L~~L~ls  487 (901)
                      +|++.........+.++.|+.|+++.+.+........     ...+++|++|++..|++..++.  .+..+++|+.|.+.
T Consensus       255 ~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~  334 (505)
T KOG3207|consen  255 NNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT  334 (505)
T ss_pred             CCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence            7666655444456666677777776666654433332     3356667777777766655543  34445555555555


Q ss_pred             CCccc
Q 041976          488 ENKID  492 (901)
Q Consensus       488 ~n~l~  492 (901)
                      .|.+.
T Consensus       335 ~n~ln  339 (505)
T KOG3207|consen  335 LNYLN  339 (505)
T ss_pred             ccccc
Confidence            55554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.01  E-value=6.5e-11  Score=115.91  Aligned_cols=135  Identities=29%  Similarity=0.280  Sum_probs=75.0

Q ss_pred             CCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEE
Q 041976          263 NLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIR  342 (901)
Q Consensus       263 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  342 (901)
                      ....|+++|+++|.++ .+.+++.-.+.++.|++++|.+... ..+..+++|+.||+++|.++ .+..|-.++.++++|.
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence            3445666666666665 4445555556666666666666532 22555566666666666555 3344444555555555


Q ss_pred             CcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCcc
Q 041976          343 LNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIA  422 (901)
Q Consensus       343 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  422 (901)
                      |+.|.+..  -+.++.+-+|..||+++|++...                     ..-..+++++.|+.+.|.+|.+.+..
T Consensus       359 La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~l---------------------deV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  359 LAQNKIET--LSGLRKLYSLVNLDLSSNQIEEL---------------------DEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhhhhHhh--hhhhHhhhhheeccccccchhhH---------------------HHhcccccccHHHHHhhcCCCccccc
Confidence            55555432  12344444455555555444311                     11235677888888888888887764


Q ss_pred             c
Q 041976          423 E  423 (901)
Q Consensus       423 ~  423 (901)
                      .
T Consensus       416 d  416 (490)
T KOG1259|consen  416 D  416 (490)
T ss_pred             h
Confidence            3

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.99  E-value=1.4e-11  Score=123.86  Aligned_cols=132  Identities=16%  Similarity=0.214  Sum_probs=62.7

Q ss_pred             CCcceeecCCCCCccCC-----ccccCCCCcCEEECCCCCCccC----CCccccCCCCCCEEECCCCcCCCC----CCcc
Q 041976          218 SPIEYLDVSETSFSELP-----DSIGNLKLLGRLMLGYSQFVGP----VPASLGNLTQLTLLHLMHNNFSGH----IPSS  284 (901)
Q Consensus       218 ~~L~~L~Ls~~~l~~lp-----~~l~~l~~L~~L~L~~n~~~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~  284 (901)
                      +.||++....|.+..-+     ..+...+.|+.+.+..|.|...    +..++..+++|++||+..|.++..    +...
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            45566666666555332     2344455566666655554321    112334455555555555544422    1122


Q ss_pred             ccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccc-----cCCcCCcEEECcCCcCccc----CChh
Q 041976          285 LSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHG-----SRLQNLVLIRLNNNSFSGT----IPSW  355 (901)
Q Consensus       285 l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~  355 (901)
                      +.                       .+++|+++++++|.+.......+     ...++|++|.+.+|.++..    +...
T Consensus       237 L~-----------------------s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~  293 (382)
T KOG1909|consen  237 LS-----------------------SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC  293 (382)
T ss_pred             hc-----------------------ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH
Confidence            33                       34445555555554443222211     2245566666666655422    1223


Q ss_pred             hcCCCCCcEEEccCCcc
Q 041976          356 LFSLPLLEYVRLSDNQL  372 (901)
Q Consensus       356 l~~l~~L~~L~L~~n~l  372 (901)
                      +...+.|+.|++++|.+
T Consensus       294 ~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  294 MAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhcchhhHHhcCCcccc
Confidence            34466667777777766

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.97  E-value=3.6e-10  Score=134.35  Aligned_cols=81  Identities=26%  Similarity=0.261  Sum_probs=49.7

Q ss_pred             cCceEeCCCCC--CCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCC
Q 041976          108 HLQTLNLSHND--FDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGN  185 (901)
Q Consensus       108 ~L~~L~Ls~n~--~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~  185 (901)
                      .|++|=+..|.  +... -..+|..++.|++|||++|.-.+++|++|+.|              -+|++|+++++.+. .
T Consensus       546 ~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L--------------i~LryL~L~~t~I~-~  609 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL--------------VHLRYLDLSDTGIS-H  609 (889)
T ss_pred             ccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhh--------------hhhhcccccCCCcc-c
Confidence            56666666654  2221 22346666666666666666556666666666              66666666666665 5


Q ss_pred             CccccCCCCCCCEEeCCCC
Q 041976          186 FPINIFHLPNPQMIRLSQN  204 (901)
Q Consensus       186 ~p~~l~~l~~L~~L~L~~n  204 (901)
                      +|..++++.+|.+|++..+
T Consensus       610 LP~~l~~Lk~L~~Lnl~~~  628 (889)
T KOG4658|consen  610 LPSGLGNLKKLIYLNLEVT  628 (889)
T ss_pred             cchHHHHHHhhheeccccc
Confidence            6666666666666666655

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=2.9e-10  Score=117.61  Aligned_cols=184  Identities=27%  Similarity=0.246  Sum_probs=110.5

Q ss_pred             cCCCCCCEEEccCCcCcccCC--CCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCc
Q 041976          286 SNLVQLTYLDLSSNSFFGEIP--DIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLE  363 (901)
Q Consensus       286 ~~l~~L~~L~Ls~n~l~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  363 (901)
                      +++.+|+...|.++.......  ....+++++.|||+.|-+..-.                      .+-.....+|+|+
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~----------------------~v~~i~eqLp~Le  175 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF----------------------PVLKIAEQLPSLE  175 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH----------------------HHHHHHHhcccch
Confidence            355666666666665442211  1334555555555555433210                      1112334556666


Q ss_pred             EEEccCCccccccCCC---CCCCCCEEEccCccCCCC-CchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEcc
Q 041976          364 YVRLSDNQLSGHIDEF---PSKSLQNIYLSNNRLQGS-IPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLS  439 (901)
Q Consensus       364 ~L~L~~n~l~~~~~~~---~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~  439 (901)
                      .|+++.|++.......   .+++|+.|.++.|.++.. +......+++|+.|+|+.|...... ......+..|++|+|+
T Consensus       176 ~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~-~~~~~i~~~L~~LdLs  254 (505)
T KOG3207|consen  176 NLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK-ATSTKILQTLQELDLS  254 (505)
T ss_pred             hcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee-cchhhhhhHHhhcccc
Confidence            6666666554333222   456778888888877632 2333457899999999999533322 2456667888999999


Q ss_pred             CCccccccccccCCCCCCccEEecCCcCCCCC--Chh-----hccCCCCCEEeCCCCccc
Q 041976          440 HNSLSLGNTFKIDSPFPKFSYLSLSACNISAF--PRF-----LRTQDELSYLDLSENKID  492 (901)
Q Consensus       440 ~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~l--p~~-----l~~~~~L~~L~ls~n~l~  492 (901)
                      +|++...........+|.|+.|.++.|++.++  |+.     ...+++|++|+++.|++.
T Consensus       255 ~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  255 NNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             CCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            99887666555556788888888888888744  332     345566777777776664

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.93  E-value=1.1e-10  Score=117.49  Aligned_cols=131  Identities=19%  Similarity=0.205  Sum_probs=67.5

Q ss_pred             CCCCCEEEccCCcCcccCCC-----CCCCCCCCEEECCCCCCCCC----CCccccCCcCCcEEECcCCcCccc----CCh
Q 041976          288 LVQLTYLDLSSNSFFGEIPD-----IFNLTQVSFFDLSNNQLAGP----IPSHGSRLQNLVLIRLNNNSFSGT----IPS  354 (901)
Q Consensus       288 l~~L~~L~Ls~n~l~~~~~~-----~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~  354 (901)
                      -+.|+++...+|++......     +...+.|+.+.++.|.|...    +...+..+++|++|||.+|.++..    +..
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            34566666666665432221     33456666666666665421    223456667777777777766532    223


Q ss_pred             hhcCCCCCcEEEccCCccccccCCC-------CCCCCCEEEccCccCCCC----CchhhhcccccCceecccCcC
Q 041976          355 WLFSLPLLEYVRLSDNQLSGHIDEF-------PSKSLQNIYLSNNRLQGS----IPSSIFELVNLTDLQLDSNNF  418 (901)
Q Consensus       355 ~l~~l~~L~~L~L~~n~l~~~~~~~-------~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l  418 (901)
                      .+..+++|++|++++|.+...-...       ..++|+.|.+.+|.++..    +...+...+.|..|+|++|.+
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            4555666777777776655322111       234555555555555422    112223344455555555544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.90  E-value=3.8e-10  Score=110.67  Aligned_cols=132  Identities=25%  Similarity=0.232  Sum_probs=71.3

Q ss_pred             CCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceec
Q 041976          334 RLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQL  413 (901)
Q Consensus       334 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  413 (901)
                      ..+.|+++||++|.|+ .+.+...-.|.++.|+++.|.+...-....+++|+.||+++|.++ .+..|-..+-+++.|.|
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            3455666666666665 344445556666666666666554333335555666666666554 23334445555666666


Q ss_pred             ccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccc
Q 041976          414 DSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDG  493 (901)
Q Consensus       414 ~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~  493 (901)
                      +.|.+...   ..++.+-+|..|++++|++......                       ..++++|.|+.+.+.+|.+.+
T Consensus       360 a~N~iE~L---SGL~KLYSLvnLDl~~N~Ie~ldeV-----------------------~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  360 AQNKIETL---SGLRKLYSLVNLDLSSNQIEELDEV-----------------------NHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhHhhh---hhhHhhhhheeccccccchhhHHHh-----------------------cccccccHHHHHhhcCCCccc
Confidence            66655544   3455555555555555554422211                       245556666666666666653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.89  E-value=2.1e-09  Score=102.15  Aligned_cols=86  Identities=33%  Similarity=0.364  Sum_probs=31.6

Q ss_pred             CCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhh-hcccccCceecccCcCCCccchhhhhhcCCCcEEE
Q 041976          359 LPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSI-FELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLY  437 (901)
Q Consensus       359 l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~  437 (901)
                      +.+|+.|++++|.+........++.|+.|++++|+++. +...+ ..+++|++|++++|++........+..+++|++|+
T Consensus        41 l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~  119 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS  119 (175)
T ss_dssp             -TT--EEE-TTS--S--TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred             hcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence            34444444444444433222234555555555555553 33334 35677777777777777665556677777777777


Q ss_pred             ccCCcccc
Q 041976          438 LSHNSLSL  445 (901)
Q Consensus       438 L~~n~l~~  445 (901)
                      +.+|++..
T Consensus       120 L~~NPv~~  127 (175)
T PF14580_consen  120 LEGNPVCE  127 (175)
T ss_dssp             -TT-GGGG
T ss_pred             ccCCcccc
Confidence            77777653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.87  E-value=9.7e-10  Score=104.40  Aligned_cols=81  Identities=28%  Similarity=0.345  Sum_probs=16.1

Q ss_pred             CCcceeecCCCCCccCCcccc-CCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccc-cCCCCCCEEE
Q 041976          218 SPIEYLDVSETSFSELPDSIG-NLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSL-SNLVQLTYLD  295 (901)
Q Consensus       218 ~~L~~L~Ls~~~l~~lp~~l~-~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~  295 (901)
                      ..+++|+|++|.|+.+ +.++ .+.+|+.|++++|.+...  +.+..+++|++|++++|.++.. ...+ ..+++|++|+
T Consensus        19 ~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   19 VKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred             cccccccccccccccc-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence            3445555555555444 2333 345555555555555432  2344455555555555555522 2222 2345555555


Q ss_pred             ccCCcCc
Q 041976          296 LSSNSFF  302 (901)
Q Consensus       296 Ls~n~l~  302 (901)
                      +++|++.
T Consensus        95 L~~N~I~  101 (175)
T PF14580_consen   95 LSNNKIS  101 (175)
T ss_dssp             -TTS---
T ss_pred             CcCCcCC
Confidence            5555544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.82  E-value=1.4e-09  Score=84.82  Aligned_cols=60  Identities=43%  Similarity=0.638  Sum_probs=37.0

Q ss_pred             CCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcC
Q 041976          784 SLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRL  843 (901)
Q Consensus       784 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  843 (901)
                      +|++|++++|+++.+.+..|.++++|++|++++|+++.+.|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455666666666655555666666666666666666665566666666666666666654

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.79  E-value=3.5e-09  Score=126.05  Aligned_cols=262  Identities=21%  Similarity=0.235  Sum_probs=150.1

Q ss_pred             CCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCC--CccCCCccccCCCCCCEEECCCCcCCCCCCccccCC
Q 041976          211 FPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQ--FVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNL  288 (901)
Q Consensus       211 ~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~--~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  288 (901)
                      +|........|...+-++.+..++..... +.|++|-+..|.  +.......|..++.|++||+++|.--+.+|+.++.+
T Consensus       516 ~~~~~~~~~~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L  594 (889)
T KOG4658|consen  516 IPQVKSWNSVRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL  594 (889)
T ss_pred             cccccchhheeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh
Confidence            44445556778888888888777655443 368888887775  333333346678888888888877767788888888


Q ss_pred             CCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCc--ccCChhhcCCCCCcEEE
Q 041976          289 VQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFS--GTIPSWLFSLPLLEYVR  366 (901)
Q Consensus       289 ~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~  366 (901)
                      .+||+|+++++.+...++.+.++..|.+|++..+.....+|.....+++|++|.+......  ...-..+..+.+|+.+.
T Consensus       595 i~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls  674 (889)
T KOG4658|consen  595 VHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLS  674 (889)
T ss_pred             hhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhe
Confidence            8888888888887755555777888888888777655455555666777777777655421  11222233334444333


Q ss_pred             ccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccC----ceecccCcCCCccchhhhhhcCCCcEEEccCCc
Q 041976          367 LSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLT----DLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNS  442 (901)
Q Consensus       367 L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~  442 (901)
                      .......                        +...+..++.|.    .+.+..+.....  ...+..+.+|+.|.+.++.
T Consensus       675 ~~~~s~~------------------------~~e~l~~~~~L~~~~~~l~~~~~~~~~~--~~~~~~l~~L~~L~i~~~~  728 (889)
T KOG4658|consen  675 ITISSVL------------------------LLEDLLGMTRLRSLLQSLSIEGCSKRTL--ISSLGSLGNLEELSILDCG  728 (889)
T ss_pred             eecchhH------------------------hHhhhhhhHHHHHHhHhhhhccccccee--ecccccccCcceEEEEcCC
Confidence            3221110                        000111111111    112111221111  1245555666666666655


Q ss_pred             cccccccc----cCC-CCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhh
Q 041976          443 LSLGNTFK----IDS-PFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWI  499 (901)
Q Consensus       443 l~~~~~~~----~~~-~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~  499 (901)
                      +.......    ... .++++..+.+.+|.....+.|....++|+.|.+..|.....+.+..
T Consensus       729 ~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~  790 (889)
T KOG4658|consen  729 ISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKL  790 (889)
T ss_pred             CchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHH
Confidence            54222110    000 1445666666666666666677777888888888887655544443

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.78  E-value=6.8e-09  Score=73.70  Aligned_cols=40  Identities=38%  Similarity=0.837  Sum_probs=30.2

Q ss_pred             HHHHHHHHHhhhcCcCCCCCccccccCCCcCCCCCCC--CCCcCccceeec
Q 041976           29 REQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKD--TNCCSWDGVTCD   77 (901)
Q Consensus        29 ~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~l~~w~~~--~~~c~w~gv~c~   77 (901)
                      ++|++||++||+++..++.+         .+.+|...  .+||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~---------~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSG---------VLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-C---------CCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCc---------ccccCCCcCCCCCeeeccEEeC
Confidence            68999999999999865432         89999976  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.76  E-value=3.9e-09  Score=82.27  Aligned_cols=61  Identities=33%  Similarity=0.488  Sum_probs=57.4

Q ss_pred             cceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCcc
Q 041976          759 TVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNV  819 (901)
Q Consensus       759 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l  819 (901)
                      ++|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4689999999999988888999999999999999999999999999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.74  E-value=1.3e-09  Score=121.66  Aligned_cols=196  Identities=31%  Similarity=0.323  Sum_probs=84.0

Q ss_pred             ccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCE
Q 041976          237 IGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSF  316 (901)
Q Consensus       237 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~  316 (901)
                      +..+++|+.|++.+|.+.+. ...+..+++|++|++++|.|+...  .+..++.|+.|++++|.++ .+..+..++.|+.
T Consensus        91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~~~~~~l~~L~~  166 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DISGLESLKSLKL  166 (414)
T ss_pred             cccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hccCCccchhhhc
Confidence            34444444444444444321 111333444444444444444321  1333444444555554444 2222333444555


Q ss_pred             EECCCCCCCCCCC-ccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCC--CCEEEccCcc
Q 041976          317 FDLSNNQLAGPIP-SHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKS--LQNIYLSNNR  393 (901)
Q Consensus       317 L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~--L~~L~L~~n~  393 (901)
                      +++++|.+...-+ . ...+.+++.+++.+|.+...  ..+..+..+..+++..|.++...+......  |+.+++++|+
T Consensus       167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~  243 (414)
T KOG0531|consen  167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNR  243 (414)
T ss_pred             ccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCc
Confidence            5555554442221 1 34445555555555554322  112222333333445554443333222222  5555555555


Q ss_pred             CCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCcc
Q 041976          394 LQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSL  443 (901)
Q Consensus       394 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l  443 (901)
                      +. ..+..+..+..+..+++..|++...   ..+.....+..+....+.+
T Consensus       244 i~-~~~~~~~~~~~l~~l~~~~n~~~~~---~~~~~~~~~~~~~~~~~~~  289 (414)
T KOG0531|consen  244 IS-RSPEGLENLKNLPVLDLSSNRISNL---EGLERLPKLSELWLNDNKL  289 (414)
T ss_pred             cc-cccccccccccccccchhhcccccc---ccccccchHHHhccCcchh
Confidence            54 2223444555666666666665544   2233444444444444443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.72  E-value=1.1e-09  Score=122.36  Aligned_cols=241  Identities=27%  Similarity=0.277  Sum_probs=139.4

Q ss_pred             CCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEEC
Q 041976          193 LPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHL  272 (901)
Q Consensus       193 l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L  272 (901)
                      +..++.+.+..| .+.-.......+++|+.|++..|.++.+...+..+++|++|++++|.|+..  ..+..++.|+.|++
T Consensus        71 l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   71 LTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNL  147 (414)
T ss_pred             hHhHHhhccchh-hhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc--cchhhccchhhhee
Confidence            344444455555 333222234556667777777777776654467777777777777777644  23556666777777


Q ss_pred             CCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCccc
Q 041976          273 MHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGT  351 (901)
Q Consensus       273 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  351 (901)
                      ++|.++..  ..+..+++|+.+++++|.+....+. ...+.+++.+++.+|.+.  ....+..+..+..+++..|.++..
T Consensus       148 ~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~--~i~~~~~~~~l~~~~l~~n~i~~~  223 (414)
T KOG0531|consen  148 SGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR--EIEGLDLLKKLVLLSLLDNKISKL  223 (414)
T ss_pred             ccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh--cccchHHHHHHHHhhcccccceec
Confidence            77777633  3455577777777777777654432 466677777777777765  333444455555556777766533


Q ss_pred             CChhhcCCCC--CcEEEccCCccccc-cCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCcc---chh
Q 041976          352 IPSWLFSLPL--LEYVRLSDNQLSGH-IDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIA---EPY  425 (901)
Q Consensus       352 ~~~~l~~l~~--L~~L~L~~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~  425 (901)
                      -+  +..+..  |+.+++++|.+... .....+..+..+++.+|++...  ..+.....+..+....+.+....   ...
T Consensus       224 ~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (414)
T KOG0531|consen  224 EG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEY  299 (414)
T ss_pred             cC--cccchhHHHHHHhcccCccccccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccc
Confidence            22  222232  67777777777654 2233566777777777776533  23344455566666666554221   111


Q ss_pred             hhhhcCCCcEEEccCCccc
Q 041976          426 MFAKLIKLKYLYLSHNSLS  444 (901)
Q Consensus       426 ~l~~l~~L~~L~L~~n~l~  444 (901)
                      .....+.++.+.+..|.+.
T Consensus       300 ~~~~~~~~~~~~~~~~~~~  318 (414)
T KOG0531|consen  300 ITSAAPTLVTLTLELNPIR  318 (414)
T ss_pred             cccccccccccccccCccc
Confidence            1334445555555555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=5e-09  Score=103.06  Aligned_cols=151  Identities=17%  Similarity=0.113  Sum_probs=77.2

Q ss_pred             CCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCC--CCCCCCCcceeecCCCCCcc--CCccccC-CCCcC
Q 041976          170 SSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFP--ANNWTSPIEYLDVSETSFSE--LPDSIGN-LKLLG  244 (901)
Q Consensus       170 ~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~--~~~~~~~L~~L~Ls~~~l~~--lp~~l~~-l~~L~  244 (901)
                      .+|+.|.+.++.+.+.+...+++-.+|+.|+|+.+..++...-  .+..++.|..|+++.|.+..  +...+.. -.+|+
T Consensus       210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~  289 (419)
T KOG2120|consen  210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT  289 (419)
T ss_pred             HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh
Confidence            4555555555555555555555555555555555533332111  12345555555555555441  1111111 13566


Q ss_pred             EEECCCCCCc---cCCCccccCCCCCCEEECCCCc-CCCCCCccccCCCCCCEEEccCCcCcccCCC----CCCCCCCCE
Q 041976          245 RLMLGYSQFV---GPVPASLGNLTQLTLLHLMHNN-FSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD----IFNLTQVSF  316 (901)
Q Consensus       245 ~L~L~~n~~~---~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~----~~~l~~L~~  316 (901)
                      .|+++++.-.   ..+..-..++++|.+|||++|. ++...-..|-+++.|++|.++.|..  .+|.    +...+.|.+
T Consensus       290 ~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~y  367 (419)
T KOG2120|consen  290 QLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVY  367 (419)
T ss_pred             hhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEE
Confidence            6666655311   1111223466777777777653 3332333456677777777777753  3333    456777888


Q ss_pred             EECCCC
Q 041976          317 FDLSNN  322 (901)
Q Consensus       317 L~l~~n  322 (901)
                      |++.++
T Consensus       368 Ldv~g~  373 (419)
T KOG2120|consen  368 LDVFGC  373 (419)
T ss_pred             EEeccc
Confidence            877665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.34  E-value=3.8e-08  Score=108.02  Aligned_cols=175  Identities=24%  Similarity=0.212  Sum_probs=126.2

Q ss_pred             CCCCcEEEccCCcccccccccccc-CCCCCEEECCCCcCc----------ccCCcchhcCCCCccEEECCCCcccccCCc
Q 041976          546 PSSLRVLLISNNQFTGEIIHSICD-IIALDVLDLSNNRLN----------GTIPECIGNFSPSLSVLDLRNNRLNGSIPG  614 (901)
Q Consensus       546 ~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~----------~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~  614 (901)
                      +.+|+.|.+.++.+..  ...+.. -.+|++|.- .|.+.          |.+...+ .+. .|...+.++|.+. ....
T Consensus       108 F~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~-~Wn-~L~~a~fsyN~L~-~mD~  181 (1096)
T KOG1859|consen  108 FRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSP-VWN-KLATASFSYNRLV-LMDE  181 (1096)
T ss_pred             ccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccch-hhh-hHhhhhcchhhHH-hHHH
Confidence            6788888888888763  111111 123444422 22211          1111111 112 6788889999987 5667


Q ss_pred             CccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCC
Q 041976          615 TFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFP  694 (901)
Q Consensus       615 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~  694 (901)
                      ++.-++.|+.|+|++|+++...  .+..|+.|++|||++|.+....--...++. |+.|.+++|.++..    ....++.
T Consensus       182 SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL----~gie~Lk  254 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL----RGIENLK  254 (1096)
T ss_pred             HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh----hhHHhhh
Confidence            8888999999999999998654  789999999999999999765544444555 99999999987632    3347899


Q ss_pred             CCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccc
Q 041976          695 KLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRY  733 (901)
Q Consensus       695 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~  733 (901)
                      +|+.||+++|-+.+.---.++..+..|+.+.+.+|.+-.
T Consensus       255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            999999999999887666777888999999999998744

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.33  E-value=1.6e-08  Score=110.86  Aligned_cols=129  Identities=28%  Similarity=0.212  Sum_probs=94.6

Q ss_pred             CCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCC-CCCCCCEEEc
Q 041976          311 LTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF-PSKSLQNIYL  389 (901)
Q Consensus       311 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~L~~L~L  389 (901)
                      ...|...+.+.|.+. .+..++.-++.|+.|+|++|+++...  .+..++.|++|||++|.+....... .-..|+.|.+
T Consensus       163 Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~l  239 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNL  239 (1096)
T ss_pred             hhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeee
Confidence            345667777777776 55666777788888888888887443  6778888888888888876433222 1123888888


Q ss_pred             cCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccc
Q 041976          390 SNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS  444 (901)
Q Consensus       390 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~  444 (901)
                      ++|.++..  ..+.++.+|+.||+++|-+.+......++.+..|+.|.|.+|++-
T Consensus       240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            88887643  467788888888888888877666566778888888888888765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=1.3e-08  Score=100.17  Aligned_cols=153  Identities=24%  Similarity=0.179  Sum_probs=88.0

Q ss_pred             CCCEEEccCCcCcccCCC--CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCc-Cccc-CChhhcCCCCCcEE
Q 041976          290 QLTYLDLSSNSFFGEIPD--IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNS-FSGT-IPSWLFSLPLLEYV  365 (901)
Q Consensus       290 ~L~~L~Ls~n~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L  365 (901)
                      .|++|||++..++...-.  +..+.+|+.|.+.++++.+.+...+++-.+|+.++++.+. ++.. ..-.+..++.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            466677766655532111  4566777777777777777777777777777777777654 3211 11245677888888


Q ss_pred             EccCCccccccCCC----CCCCCCEEEccCccCC--C-CCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEc
Q 041976          366 RLSDNQLSGHIDEF----PSKSLQNIYLSNNRLQ--G-SIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYL  438 (901)
Q Consensus       366 ~L~~n~l~~~~~~~----~~~~L~~L~L~~n~l~--~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L  438 (901)
                      ++++|.+....-..    -.++|+.|+++++.-.  . .+..-...+++|.+|||++|..-...-...|.+++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            88888766543221    3456777777765421  0 111122356667777776654332222244555566666666


Q ss_pred             cCCc
Q 041976          439 SHNS  442 (901)
Q Consensus       439 ~~n~  442 (901)
                      +.|.
T Consensus       346 sRCY  349 (419)
T KOG2120|consen  346 SRCY  349 (419)
T ss_pred             hhhc
Confidence            5554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.05  E-value=2e-07  Score=90.76  Aligned_cols=246  Identities=17%  Similarity=0.112  Sum_probs=122.9

Q ss_pred             eEEEEEcCCCCCCCC----CCCCcccccCccCceEeCCCCCCCC--CcCC-------ccccCCCCCceeeCCCCcCCCCC
Q 041976           82 NVISLDLSCSWLHGN----IPTNTSLFHLLHLQTLNLSHNDFDY--SEIS-------SGFSRFRNLTHFSLSDSNINCKI  148 (901)
Q Consensus        82 ~v~~l~L~~~~~~g~----~~~~~~l~~l~~L~~L~Ls~n~~~~--~~~~-------~~l~~l~~L~~L~Ls~~~~~~~~  148 (901)
                      .++.++|+||.+...    +..  .+.+-++|++.++|.-....  ..++       ..+-+|++|+..+||+|.|....
T Consensus        31 ~~~evdLSGNtigtEA~e~l~~--~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          31 ELVEVDLSGNTIGTEAMEELCN--VIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             ceeEEeccCCcccHHHHHHHHH--HHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            467777777776432    222  34456666666666532111  0122       34556777777777777776666


Q ss_pred             CcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCC
Q 041976          149 PYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSET  228 (901)
Q Consensus       149 p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~  228 (901)
                      |..++.+         ++.- +.|.+|.+++|.+...--..+++  .|++  |..|       .....-+.|++..+..|
T Consensus       109 ~e~L~d~---------is~~-t~l~HL~l~NnGlGp~aG~rigk--al~~--la~n-------KKaa~kp~Le~vicgrN  167 (388)
T COG5238         109 PEELGDL---------ISSS-TDLVHLKLNNNGLGPIAGGRIGK--ALFH--LAYN-------KKAADKPKLEVVICGRN  167 (388)
T ss_pred             chHHHHH---------HhcC-CCceeEEeecCCCCccchhHHHH--HHHH--HHHH-------hhhccCCCceEEEeccc
Confidence            6555443         1111 56666666666543111111110  0000  0000       00112344555555555


Q ss_pred             CCccCCcc-----ccCCCCcCEEECCCCCCccCC-----CccccCCCCCCEEECCCCcCCCCCC----ccccCCCCCCEE
Q 041976          229 SFSELPDS-----IGNLKLLGRLMLGYSQFVGPV-----PASLGNLTQLTLLHLMHNNFSGHIP----SSLSNLVQLTYL  294 (901)
Q Consensus       229 ~l~~lp~~-----l~~l~~L~~L~L~~n~~~~~~-----p~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L  294 (901)
                      ++...|..     +..-..|+++.+..|.|...-     -..+..+.+|+.||+..|.++..-.    ..+...+.|+.|
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            55544321     222346666666666554210     0123455677777777776653321    223344557777


Q ss_pred             EccCCcCcccCCC-----C--CCCCCCCEEECCCCCCCCCCCcc-------ccCCcCCcEEECcCCcCcc
Q 041976          295 DLSSNSFFGEIPD-----I--FNLTQVSFFDLSNNQLAGPIPSH-------GSRLQNLVLIRLNNNSFSG  350 (901)
Q Consensus       295 ~Ls~n~l~~~~~~-----~--~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~~L~L~~n~l~~  350 (901)
                      .+..|-++..-..     +  ...++|..|...+|...+.+...       -.+++-|..+.+.+|++..
T Consensus       248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            7777755432111     1  13466677777777655432221       1356777777788888763

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.05  E-value=6.2e-07  Score=78.33  Aligned_cols=112  Identities=25%  Similarity=0.359  Sum_probs=86.9

Q ss_pred             cceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeC
Q 041976          759 TVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNL  838 (901)
Q Consensus       759 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  838 (901)
                      ..|+.++|++|.+....+..-...+..+.|+|++|.|+ .+|..+..++.|+.|+++.|.+. ..|+.+..|.+|.+|+.
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence            56888999999998655554455668999999999999 56777999999999999999998 56788888999999999


Q ss_pred             CCCcCccCCCCCCCCCCcccccccCCcCCCCCCCCCCCCC
Q 041976          839 SHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKCGN  878 (901)
Q Consensus       839 s~N~l~g~iP~~~~~~~~~~~~~~~n~~lcg~~l~~~c~~  878 (901)
                      -+|.+. +||....+.+.++.--.||     +||...|..
T Consensus       131 ~~na~~-eid~dl~~s~~~al~~lgn-----epl~~~~~~  164 (177)
T KOG4579|consen  131 PENARA-EIDVDLFYSSLPALIKLGN-----EPLGDETKK  164 (177)
T ss_pred             CCCccc-cCcHHHhccccHHHHHhcC-----CcccccCcc
Confidence            999887 6776544444443333344     566666643

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=1.5e-06  Score=85.90  Aligned_cols=213  Identities=25%  Similarity=0.262  Sum_probs=131.4

Q ss_pred             CCCCCCEEECCCCcCCCCCC-ccc-cCCCCCCEEEccCCcCccc--CCC-CCCCCCCCEEECCCCCCCCCCCccccCCcC
Q 041976          263 NLTQLTLLHLMHNNFSGHIP-SSL-SNLVQLTYLDLSSNSFFGE--IPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQN  337 (901)
Q Consensus       263 ~l~~L~~L~L~~n~l~~~~p-~~l-~~l~~L~~L~Ls~n~l~~~--~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  337 (901)
                      ...-++.|.+.++.+...-. ..| ..++.++.+||.+|.++.-  +.. +.++|.|++|+++.|.+...+...-....+
T Consensus        43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n  122 (418)
T KOG2982|consen   43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN  122 (418)
T ss_pred             cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence            33445566666666543211 122 2467888999999988742  122 568889999999999887544332245678


Q ss_pred             CcEEECcCCcCccc-CChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccC
Q 041976          338 LVLIRLNNNSFSGT-IPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSN  416 (901)
Q Consensus       338 L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  416 (901)
                      |++|-|.+..+.-. ....+..+|.+++|.++.|.+.            .+.+..+.+...-       +.+.++.+..|
T Consensus       123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r------------q~n~Dd~c~e~~s-------~~v~tlh~~~c  183 (418)
T KOG2982|consen  123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR------------QLNLDDNCIEDWS-------TEVLTLHQLPC  183 (418)
T ss_pred             eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh------------hhccccccccccc-------hhhhhhhcCCc
Confidence            88888888776422 2345667788888888887443            2333333322111       12223333333


Q ss_pred             cCCCccch-hhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCC--hhhccCCCCCEEeCCCCcccc
Q 041976          417 NFSGIAEP-YMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFP--RFLRTQDELSYLDLSENKIDG  493 (901)
Q Consensus       417 ~l~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp--~~l~~~~~L~~L~ls~n~l~~  493 (901)
                      ........ ..-.-++++..+.+..|++...........+|.+..|.+..+++....  +.+..++.|..|.++++.+.+
T Consensus       184 ~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  184 LEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             HHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            21111000 112335777888888888777666666677888888888888887655  367888999999999998764


Q ss_pred             c
Q 041976          494 Q  494 (901)
Q Consensus       494 ~  494 (901)
                      .
T Consensus       264 ~  264 (418)
T KOG2982|consen  264 P  264 (418)
T ss_pred             c
Confidence            3

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=3.2e-06  Score=83.72  Aligned_cols=195  Identities=22%  Similarity=0.283  Sum_probs=119.2

Q ss_pred             CCcccEEeCCCCcCccC--ccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHh
Q 041976          643 CTKVEVLDIGNIKINDA--FPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNA  720 (901)
Q Consensus       643 l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~  720 (901)
                      ++.++++|+.+|.|++.  +...+.++|.|++|+|+.|++...|....  ....+|+.|-|.+..+.-.....++..++.
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--ccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            55666777777766542  22234577777777777777765555443  345677777777777766666666777777


Q ss_pred             hhcccccCCccccc--Cccceec----eeEEeecch-------hHHHhhhccceeEEEcccccccccc-chhhhccCCCC
Q 041976          721 MRNVSADEGKLRYL--GEEYYQD----SVVVTLKGT-------EIEMQKILTVFTTIDFSSNGFDGEI-SQVIGKLHSLR  786 (901)
Q Consensus       721 L~~l~l~~~~~~~l--~~~~~~~----~~~~~~~~~-------~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~  786 (901)
                      ++.++++.|.+..+  +.+....    ...+...+.       .....++++++..+-+-.|.+...- -+.+..++.+.
T Consensus       148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~  227 (418)
T KOG2982|consen  148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS  227 (418)
T ss_pred             hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence            77777777654332  2111111    111111121       1223466788888888888775432 23345567777


Q ss_pred             eEeCCCCcCCCC-CCccccCCCCCCEEeCCCCccCCCCCc------CCcCCCCCCeeeCC
Q 041976          787 LLNLSHNHFTGQ-IPSSLGNLAKLESLDLSSNNVAGKIPK------PLTSLTSLSVLNLS  839 (901)
Q Consensus       787 ~L~Ls~N~l~~~-~p~~l~~L~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~Ls  839 (901)
                      .|+|+.|+|..- .-+++..+++|..|.+++|.+....-.      -++.|+++++|+=+
T Consensus       228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             hhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            888888888752 235677888888888888887643322      13567778877633

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.99  E-value=3.5e-07  Score=79.87  Aligned_cols=92  Identities=24%  Similarity=0.333  Sum_probs=72.0

Q ss_pred             ccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeee
Q 041976          758 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLN  837 (901)
Q Consensus       758 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  837 (901)
                      ++.+++++|++|.++ .+|.++..++.|+.|+++.|.+. ..|..+..|.++-.||.-+|.+.. +|..+---+.....+
T Consensus        76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e-id~dl~~s~~~al~~  152 (177)
T KOG4579|consen   76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAE-IDVDLFYSSLPALIK  152 (177)
T ss_pred             cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcccc-CcHHHhccccHHHHH
Confidence            456788889999998 67888999999999999999999 567777779999999999999874 444333334445566


Q ss_pred             CCCCcCccCCCCCCC
Q 041976          838 LSHNRLDGPIPHGPQ  852 (901)
Q Consensus       838 Ls~N~l~g~iP~~~~  852 (901)
                      +.++++.+.-|.++|
T Consensus       153 lgnepl~~~~~~klq  167 (177)
T KOG4579|consen  153 LGNEPLGDETKKKLQ  167 (177)
T ss_pred             hcCCcccccCccccc
Confidence            788899888776644

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.97  E-value=3.1e-07  Score=95.12  Aligned_cols=63  Identities=27%  Similarity=0.336  Sum_probs=33.2

Q ss_pred             cccccCceecccC-cCCCccchhhhhhcCCCcEEEccCCc-cccccccccCCCCCCccEEecCCc
Q 041976          404 ELVNLTDLQLDSN-NFSGIAEPYMFAKLIKLKYLYLSHNS-LSLGNTFKIDSPFPKFSYLSLSAC  466 (901)
Q Consensus       404 ~l~~L~~L~L~~n-~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~~  466 (901)
                      .+++|++|++..| .++...-...-..+++|++++++++. +++..+.....++..++.+...+|
T Consensus       188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC  252 (483)
T KOG4341|consen  188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC  252 (483)
T ss_pred             hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence            4666777777663 34433222334566777777777763 334333334444444555544444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.95  E-value=1.1e-06  Score=85.83  Aligned_cols=41  Identities=27%  Similarity=0.418  Sum_probs=20.8

Q ss_pred             ccCCCCCCEEECCCCcCCCCCCcc----ccCCCCCCEEEccCCcC
Q 041976          261 LGNLTQLTLLHLMHNNFSGHIPSS----LSNLVQLTYLDLSSNSF  301 (901)
Q Consensus       261 l~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l  301 (901)
                      +.+|++|+..+++.|.+....|..    ++.-+.|++|.+++|.+
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            345556666666665555444432    23344555555555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.72  E-value=1.9e-05  Score=56.09  Aligned_cols=36  Identities=44%  Similarity=0.727  Sum_probs=15.9

Q ss_pred             CCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccC
Q 041976          784 SLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVA  820 (901)
Q Consensus       784 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~  820 (901)
                      +|++|++++|+|+. +|..+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            34445555554442 2333444555555555555444

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.70  E-value=0.00016  Score=77.67  Aligned_cols=32  Identities=28%  Similarity=0.386  Sum_probs=14.1

Q ss_pred             CCccEEECCCCcccccCCcCccCCCccCEEEccCC
Q 041976          596 PSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNN  630 (901)
Q Consensus       596 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N  630 (901)
                      ++|++|++++|... ..|..+.  .+|+.|+++.|
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            35555555555433 2222222  34555555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.69  E-value=0.00015  Score=77.72  Aligned_cols=111  Identities=17%  Similarity=0.221  Sum_probs=58.6

Q ss_pred             CCceeeccCccccCCCCC-CCCCCcEEEccCC-ccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECC
Q 041976          527 NLGYLDLRSNLLQGPLPV-PPSSLRVLLISNN-QFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLR  604 (901)
Q Consensus       527 ~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~  604 (901)
                      +|+.|.+++|.-...+|. .+.+|++|++++| .+. .+|      ..|+.|+++.+...     .+..++++|+.|.+.
T Consensus        73 sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~-sLP------~sLe~L~L~~n~~~-----~L~~LPssLk~L~I~  140 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS-GLP------ESVRSLEIKGSATD-----SIKNVPNGLTSLSIN  140 (426)
T ss_pred             CCcEEEccCCCCcccCCchhhhhhhheEccCccccc-ccc------cccceEEeCCCCCc-----ccccCcchHhheecc
Confidence            344445544333333332 2456777777776 333 233      24666777655543     233455577777775


Q ss_pred             CCc-ccc-cCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCC
Q 041976          605 NNR-LNG-SIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNI  654 (901)
Q Consensus       605 ~n~-l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n  654 (901)
                      +++ ... .+|..  -.++|++|++++|... ..|..+.  .+|+.|+++.+
T Consensus       141 ~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        141 SYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             ccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            433 110 11111  1257888888887765 2343333  47777777765

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.56  E-value=0.00011  Score=69.35  Aligned_cols=84  Identities=27%  Similarity=0.284  Sum_probs=41.8

Q ss_pred             CCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccC
Q 041976          361 LLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSH  440 (901)
Q Consensus       361 ~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~  440 (901)
                      +...++|++|.+........++.|..|.+.+|+|+..-|.--.-+++|+.|.|.+|.+....+...+..+|+|++|.+-+
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence            34555666665543333334455555555555555444433333445555555555555444333444445555555444


Q ss_pred             Cccc
Q 041976          441 NSLS  444 (901)
Q Consensus       441 n~l~  444 (901)
                      |+++
T Consensus       123 Npv~  126 (233)
T KOG1644|consen  123 NPVE  126 (233)
T ss_pred             Cchh
Confidence            4443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.52  E-value=8.7e-05  Score=52.70  Aligned_cols=36  Identities=31%  Similarity=0.457  Sum_probs=22.2

Q ss_pred             CcceeecCCCCCccCCccccCCCCcCEEECCCCCCc
Q 041976          219 PIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFV  254 (901)
Q Consensus       219 ~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~  254 (901)
                      +|++|++++|+++++|..++++++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            566666666666666665666666666666666655

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.47  E-value=0.00019  Score=67.67  Aligned_cols=107  Identities=24%  Similarity=0.273  Sum_probs=63.6

Q ss_pred             CCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEE
Q 041976          382 KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYL  461 (901)
Q Consensus       382 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  461 (901)
                      .....+|+++|.+...  ..|..++.|..|.+..|+|+.+.+ ..-.-+++|+.|.+.+|.+.......-...+|+|++|
T Consensus        42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhhc--ccCCCccccceEEecCCcceeecc-chhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            3455666666666422  345566666677777777666654 3444456677777777666544433334456677777


Q ss_pred             ecCCcCCCCCCh----hhccCCCCCEEeCCCCcc
Q 041976          462 SLSACNISAFPR----FLRTQDELSYLDLSENKI  491 (901)
Q Consensus       462 ~l~~~~l~~lp~----~l~~~~~L~~L~ls~n~l  491 (901)
                      .+-+|.++..+.    .+..+|+|+.||..+-..
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            776666654432    355667777777766543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.31  E-value=1.3e-05  Score=83.47  Aligned_cols=88  Identities=18%  Similarity=0.012  Sum_probs=39.6

Q ss_pred             cccccCceecccCc-CCCccchhhhhhcCCCcEEEccCCcccc-ccccccCCCCCCccEEecCCcCC-CCCCh--hhccC
Q 041976          404 ELVNLTDLQLDSNN-FSGIAEPYMFAKLIKLKYLYLSHNSLSL-GNTFKIDSPFPKFSYLSLSACNI-SAFPR--FLRTQ  478 (901)
Q Consensus       404 ~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~L~~L~l~~~~l-~~lp~--~l~~~  478 (901)
                      .+++|++++++.+. +++..-.....++..++.+.+.+|.-.. ..........+.+.++++..|.. +...-  .-..+
T Consensus       214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c  293 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC  293 (483)
T ss_pred             hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence            46666666666653 3332222344555556666555542111 11111222344455555555532 22111  12335


Q ss_pred             CCCCEEeCCCCcc
Q 041976          479 DELSYLDLSENKI  491 (901)
Q Consensus       479 ~~L~~L~ls~n~l  491 (901)
                      ..|+.++.+++..
T Consensus       294 ~~lq~l~~s~~t~  306 (483)
T KOG4341|consen  294 HALQVLCYSSCTD  306 (483)
T ss_pred             hHhhhhcccCCCC
Confidence            5566666666644

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.29  E-value=8.2e-05  Score=86.95  Aligned_cols=83  Identities=28%  Similarity=0.409  Sum_probs=40.6

Q ss_pred             CccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCC-
Q 041976          106 LLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQG-  184 (901)
Q Consensus       106 l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~-  184 (901)
                      ||+||+|.+++-.+....+-....++++|+.||+|+++++.-  ..+++|              ++|++|.+.+-.+.. 
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~L--------------knLq~L~mrnLe~e~~  210 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRL--------------KNLQVLSMRNLEFESY  210 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhcc--------------ccHHHHhccCCCCCch
Confidence            555666666555554433333344555556666655555421  333444              555555555444432 


Q ss_pred             CCccccCCCCCCCEEeCCCC
Q 041976          185 NFPINIFHLPNPQMIRLSQN  204 (901)
Q Consensus       185 ~~p~~l~~l~~L~~L~L~~n  204 (901)
                      ..-..+.+|++|++||+|..
T Consensus       211 ~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  211 QDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             hhHHHHhcccCCCeeecccc
Confidence            22233445555555555544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.17  E-value=0.00017  Score=84.41  Aligned_cols=108  Identities=19%  Similarity=0.257  Sum_probs=67.6

Q ss_pred             cccCceecccCcCCCccchhh-hhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEE
Q 041976          406 VNLTDLQLDSNNFSGIAEPYM-FAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYL  484 (901)
Q Consensus       406 ~~L~~L~L~~n~l~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L  484 (901)
                      .+|++|++++...-....+.. -..+|+|+.|.+.+-.+...........||+|..||+++++++.+ ..++.+++|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            467777777654332222222 334688888888887776665556666788888888888888777 667778888887


Q ss_pred             eCCCCcccccCChhhhhcCCCCccEEEcCCC
Q 041976          485 DLSENKIDGQIPSWISEIGKDSLSYVNLSHN  515 (901)
Q Consensus       485 ~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n  515 (901)
                      .+.+-.+.. ......-..++.|+.||+|..
T Consensus       201 ~mrnLe~e~-~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  201 SMRNLEFES-YQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             hccCCCCCc-hhhHHHHhcccCCCeeecccc
Confidence            777665542 111222244555555555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.00  E-value=0.00029  Score=69.53  Aligned_cols=82  Identities=26%  Similarity=0.303  Sum_probs=39.3

Q ss_pred             CCcceeecCCCCCccCCccccCCCCcCEEECCCC--CCccCCCccccCCCCCCEEECCCCcCCCCCCcc---ccCCCCCC
Q 041976          218 SPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYS--QFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSS---LSNLVQLT  292 (901)
Q Consensus       218 ~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n--~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~  292 (901)
                      ..|+.|++.+..++.+ ..+..+++|++|.++.|  .+.+.++.....+++|++|++++|++..  ++.   +..+.+|.
T Consensus        43 ~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   43 VELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLK  119 (260)
T ss_pred             cchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchh
Confidence            3344444444444433 33445556666666666  4444444444445666666666665542  121   23344444


Q ss_pred             EEEccCCcCc
Q 041976          293 YLDLSSNSFF  302 (901)
Q Consensus       293 ~L~Ls~n~l~  302 (901)
                      .|++.+|..+
T Consensus       120 ~Ldl~n~~~~  129 (260)
T KOG2739|consen  120 SLDLFNCSVT  129 (260)
T ss_pred             hhhcccCCcc
Confidence            5555554443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.57  E-value=0.0083  Score=54.83  Aligned_cols=76  Identities=24%  Similarity=0.334  Sum_probs=26.5

Q ss_pred             CccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEcc
Q 041976          597 SLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLR  676 (901)
Q Consensus       597 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~  676 (901)
                      +|+.+.+..+ +..+....|.++.+++.+.+.+ .+.......|..+++|+.+++..+ +.......|.++ .|+.+.+.
T Consensus        36 ~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   36 SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             cccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            4444444432 3333334444444444444433 222233334444444444444433 333333334443 44444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.55  E-value=0.0027  Score=62.90  Aligned_cols=65  Identities=22%  Similarity=0.387  Sum_probs=32.5

Q ss_pred             CCcccEEeCCCC--cCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCcccc
Q 041976          643 CTKVEVLDIGNI--KINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSG  708 (901)
Q Consensus       643 l~~L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  708 (901)
                      +++|++|.++.|  ++.+.++.....+|+|+++++++|++.. +....+...+.+|..||+.+|.-++
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhhcchhhhhcccCCccc
Confidence            344444444444  3333333333344555556666555542 2223333455666677777666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.28  E-value=0.013  Score=53.60  Aligned_cols=121  Identities=16%  Similarity=0.097  Sum_probs=45.6

Q ss_pred             cccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 041976          236 SIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQV  314 (901)
Q Consensus       236 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L  314 (901)
                      .+.++++|+.+.+.. .+...-..+|.++++|+.+.+..+ +.......|..+++++.+.+.. .+...... +..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            344555555555553 233333344555556666666553 4433334455665666666644 22222222 4446666


Q ss_pred             CEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCC
Q 041976          315 SFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLL  362 (901)
Q Consensus       315 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  362 (901)
                      +.+++..+ +.......+.++ +|+.+.+.. .+.......|.++++|
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            66666543 333334445555 666666554 3333334445554444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.01  E-value=0.00044  Score=68.32  Aligned_cols=85  Identities=19%  Similarity=0.142  Sum_probs=50.7

Q ss_pred             CCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEc
Q 041976          359 LPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYL  438 (901)
Q Consensus       359 l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L  438 (901)
                      +.+.+.|++-+|.+.+..-...++.|+.|.|+-|+|+..  ..+..|++|++|+|..|.|..+.....+.++++|+.|.|
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            445566666666665433333556666666666666533  235566666666666666666655555666666666666


Q ss_pred             cCCcccc
Q 041976          439 SHNSLSL  445 (901)
Q Consensus       439 ~~n~l~~  445 (901)
                      ..|+..+
T Consensus        96 ~ENPCc~  102 (388)
T KOG2123|consen   96 DENPCCG  102 (388)
T ss_pred             ccCCccc
Confidence            6665443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.99  E-value=0.00053  Score=67.77  Aligned_cols=101  Identities=27%  Similarity=0.267  Sum_probs=65.1

Q ss_pred             CcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCC-CchhhhcccccCceec
Q 041976          335 LQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGS-IPSSIFELVNLTDLQL  413 (901)
Q Consensus       335 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L  413 (901)
                      +.+.+.|+..++.++.+  .....++.|+.|.|+-|+++...+...|+.|++|+|..|.|... --..+.++++|+.|.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            44566777777777643  34556777788888888777776666777788888877777632 1123456777777777


Q ss_pred             ccCcCCCccch----hhhhhcCCCcEEE
Q 041976          414 DSNNFSGIAEP----YMFAKLIKLKYLY  437 (901)
Q Consensus       414 ~~n~l~~~~~~----~~l~~l~~L~~L~  437 (901)
                      ..|.-.+....    ..+..+|+|+.||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            77776655432    2344556666553

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.01  E-value=0.0077  Score=35.42  Aligned_cols=12  Identities=67%  Similarity=0.861  Sum_probs=5.1

Q ss_pred             CCEEeCCCCccC
Q 041976          809 LESLDLSSNNVA  820 (901)
Q Consensus       809 L~~L~Ls~N~l~  820 (901)
                      |++|||++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.95  E-value=0.0081  Score=35.32  Aligned_cols=20  Identities=55%  Similarity=0.788  Sum_probs=10.2

Q ss_pred             CCeEeCCCCcCCCCCCccccC
Q 041976          785 LRLLNLSHNHFTGQIPSSLGN  805 (901)
Q Consensus       785 L~~L~Ls~N~l~~~~p~~l~~  805 (901)
                      |++|||++|+++ .+|..|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            455555555555 44444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.50  E-value=0.0065  Score=70.01  Aligned_cols=35  Identities=26%  Similarity=0.130  Sum_probs=18.1

Q ss_pred             CCCcCEEECCCCCCccC--CCccccCCCCCCEEECCC
Q 041976          240 LKLLGRLMLGYSQFVGP--VPASLGNLTQLTLLHLMH  274 (901)
Q Consensus       240 l~~L~~L~L~~n~~~~~--~p~~l~~l~~L~~L~L~~  274 (901)
                      ++.|+.|.+..+.-...  +-.....+++|+.|++++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            55666666665533222  223334556666666665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.31  E-value=0.0091  Score=68.80  Aligned_cols=60  Identities=20%  Similarity=0.143  Sum_probs=24.7

Q ss_pred             CCCCEEEccCcc-CCCCCchhhhc-ccccCceecccCc-CCCccchhhhhhcCCCcEEEccCC
Q 041976          382 KSLQNIYLSNNR-LQGSIPSSIFE-LVNLTDLQLDSNN-FSGIAEPYMFAKLIKLKYLYLSHN  441 (901)
Q Consensus       382 ~~L~~L~L~~n~-l~~~~~~~~~~-l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~L~~n  441 (901)
                      ++|+.++++.+. +++..-..++. +++|+.|.+..+. +++..-......++.|++|+++++
T Consensus       243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c  305 (482)
T KOG1947|consen  243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC  305 (482)
T ss_pred             CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence            444444444444 33222222222 4455555544444 333222233334445555555544

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.23  E-value=0.13  Score=27.95  Aligned_cols=16  Identities=31%  Similarity=0.617  Sum_probs=6.6

Q ss_pred             CcceeecCCCCCccCC
Q 041976          219 PIEYLDVSETSFSELP  234 (901)
Q Consensus       219 ~L~~L~Ls~~~l~~lp  234 (901)
                      +|+.|++++|+++.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555555555555443

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.10  E-value=0.0031  Score=70.66  Aligned_cols=36  Identities=42%  Similarity=0.540  Sum_probs=18.3

Q ss_pred             CCEEECCCCcCcccCCcch----hcCCCCccEEECCCCccc
Q 041976          573 LDVLDLSNNRLNGTIPECI----GNFSPSLSVLDLRNNRLN  609 (901)
Q Consensus       573 L~~L~Ls~n~l~~~~p~~~----~~~~~~L~~L~L~~n~l~  609 (901)
                      +..|.+.+|.+.......+    ... +.|+.|++++|.+.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~-~~L~~L~l~~n~l~  128 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTL-PTLGQLDLSGNNLG  128 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhccc-ccHhHhhcccCCCc
Confidence            5666677777653322111    122 25555666666554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.48  E-value=0.28  Score=30.13  Aligned_cols=16  Identities=38%  Similarity=0.567  Sum_probs=7.8

Q ss_pred             CCCCEEeCCCCccCCC
Q 041976          807 AKLESLDLSSNNVAGK  822 (901)
Q Consensus       807 ~~L~~L~Ls~N~l~~~  822 (901)
                      ++|+.|+|++|+|+.+
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            3445555555555433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.48  E-value=0.28  Score=30.13  Aligned_cols=16  Identities=38%  Similarity=0.567  Sum_probs=7.8

Q ss_pred             CCCCEEeCCCCccCCC
Q 041976          807 AKLESLDLSSNNVAGK  822 (901)
Q Consensus       807 ~~L~~L~Ls~N~l~~~  822 (901)
                      ++|+.|+|++|+|+.+
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            3445555555555433

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.40  E-value=0.36  Score=29.61  Aligned_cols=23  Identities=35%  Similarity=0.553  Sum_probs=16.6

Q ss_pred             cCCCCeEeCCCCcCCCCCCcccc
Q 041976          782 LHSLRLLNLSHNHFTGQIPSSLG  804 (901)
Q Consensus       782 l~~L~~L~Ls~N~l~~~~p~~l~  804 (901)
                      +++|++|+|++|+|+.+.+..|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46788888888888866555554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.40  E-value=0.36  Score=29.61  Aligned_cols=23  Identities=35%  Similarity=0.553  Sum_probs=16.6

Q ss_pred             cCCCCeEeCCCCcCCCCCCcccc
Q 041976          782 LHSLRLLNLSHNHFTGQIPSSLG  804 (901)
Q Consensus       782 l~~L~~L~Ls~N~l~~~~p~~l~  804 (901)
                      +++|++|+|++|+|+.+.+..|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46788888888888866555554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.30  E-value=0.3  Score=26.56  Aligned_cols=13  Identities=23%  Similarity=0.365  Sum_probs=4.1

Q ss_pred             ccEEecCCcCCCC
Q 041976          458 FSYLSLSACNISA  470 (901)
Q Consensus       458 L~~L~l~~~~l~~  470 (901)
                      |+.|++++|+++.
T Consensus         3 L~~L~l~~n~L~~   15 (17)
T PF13504_consen    3 LRTLDLSNNRLTS   15 (17)
T ss_dssp             -SEEEETSS--SS
T ss_pred             cCEEECCCCCCCC
Confidence            3444444444433

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=87.36  E-value=0.0045  Score=69.45  Aligned_cols=36  Identities=33%  Similarity=0.355  Sum_probs=21.3

Q ss_pred             CCEEECCCCcCCCCCCc----cccCCCCCCEEEccCCcCc
Q 041976          267 LTLLHLMHNNFSGHIPS----SLSNLVQLTYLDLSSNSFF  302 (901)
Q Consensus       267 L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~  302 (901)
                      +..|.+.+|.+......    .+.....|..|++++|.+.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~  128 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG  128 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence            66677777776644222    3445566666666666655

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.60  E-value=0.033  Score=54.05  Aligned_cols=84  Identities=19%  Similarity=0.191  Sum_probs=70.5

Q ss_pred             ccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeee
Q 041976          758 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLN  837 (901)
Q Consensus       758 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  837 (901)
                      ....+.||++.|++.. .-..|+-++.|..||++.|++. ..|..++++..+..+++..|..+ ..|.++..++.+++++
T Consensus        41 ~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            3556889999998863 3345667888899999999998 56888999999999999999887 6789999999999999


Q ss_pred             CCCCcCc
Q 041976          838 LSHNRLD  844 (901)
Q Consensus       838 Ls~N~l~  844 (901)
                      +-+|++.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9999975

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.53  E-value=0.075  Score=50.74  Aligned_cols=82  Identities=23%  Similarity=0.294  Sum_probs=48.0

Q ss_pred             CCCcEEEccCCccccccccccccCCCCCEEECCCCcCccc-CCcchhcCCCCccEEECCCC-cccccCCcCccCCCccCE
Q 041976          547 SSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGT-IPECIGNFSPSLSVLDLRNN-RLNGSIPGTFAESNWLRS  624 (901)
Q Consensus       547 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~  624 (901)
                      ..++.++.++..|..+-...+.+++.++.|.+.+|.--+. --..+++..++|+.|+|++| +|+...-..+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            3567788888888877777788888888888888763211 11122333456777777766 444322233334444444


Q ss_pred             EEcc
Q 041976          625 LNLN  628 (901)
Q Consensus       625 L~Ls  628 (901)
                      |.+.
T Consensus       181 L~l~  184 (221)
T KOG3864|consen  181 LHLY  184 (221)
T ss_pred             HHhc
Confidence            4443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=83.04  E-value=0.034  Score=53.91  Aligned_cols=85  Identities=14%  Similarity=0.053  Sum_probs=40.5

Q ss_pred             cCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCE
Q 041976          190 IFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTL  269 (901)
Q Consensus       190 l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~  269 (901)
                      +........||++.| .+...-..++.++.+..||++.|.+..+|..++....++.+++..|... ..|.+++..++++.
T Consensus        38 i~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK  115 (326)
T ss_pred             hhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence            344445555555555 3332222233444455555555555555555555555555554444433 34444444555555


Q ss_pred             EECCCCc
Q 041976          270 LHLMHNN  276 (901)
Q Consensus       270 L~L~~n~  276 (901)
                      +++.++.
T Consensus       116 ~e~k~~~  122 (326)
T KOG0473|consen  116 NEQKKTE  122 (326)
T ss_pred             hhhccCc
Confidence            5444444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.00  E-value=0.6  Score=44.85  Aligned_cols=35  Identities=11%  Similarity=0.168  Sum_probs=19.6

Q ss_pred             ccCEEEccCCcccccCCccccCCCcccEEeCCCCc
Q 041976          621 WLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIK  655 (901)
Q Consensus       621 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~  655 (901)
                      .++.+|-++..|..+.-+.+.++++++.|.+.+|.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence            35566666666655555555555555555555553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	901
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-38
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-38
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		6e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-06
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		4e-06
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		7e-05
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		1e-04
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		2e-04
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		2e-04
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		4e-04
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		7e-04
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		8e-04
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		8e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  156 bits (395), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 178/629 (28%), Positives = 252/629 (40%), Gaps = 116/629 (18%)
Query: 285 LSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLN 344
           +S  V L +LD+SSN+F   IP + + + +   D+S N+L+G      S    L L+ ++
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255
Query: 345 NNSFSGTIPSWLFSLPL--LEYVRLSDNQLSGHIDEFPS---KSLQNIYLSNNRLQGSIP 399
           +N F G IP     LPL  L+Y+ L++N+ +G I +F S    +L  + LS N   G++P
Sbjct: 256 SNQFVGPIPP----LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Query: 400 SSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFS 459
                   L  L L SNNFSG        K+  LK L LS N  S               
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS--------------G 357
Query: 460 YLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITK 519
            L  S  N+SA          L  LDLS N   G I                     +  
Sbjct: 358 ELPESLTNLSA---------SLLTLDLSSNNFSGPI---------------------LPN 387
Query: 520 MKQIPWKNLGYLDLRSNLLQGXXXXXXXXXXXXXISNNQFTGEIIHSICDIIALDVLDLS 579
           + Q P   L  L L+                     NN FTG+I  ++ +   L  L LS
Sbjct: 388 LCQNPKNTLQELYLQ---------------------NNGFTGKIPPTLSNCSELVSLHLS 426
Query: 580 NNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAXXXXXXXXXXXXXXXGGAIPQS 639
            N L+GTIP  +G+ S  L  L L  N L G IP                    G IP  
Sbjct: 427 FNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Query: 640 LVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKE--SFPKLR 697
           L NCT +  + + N ++    P W+G L  L +L L +N F G++    P E      L 
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI----PAELGDCRSLI 541
Query: 698 ILDLSINNFSGYLPER-FLENLNAMRNVSADEGKLRY-------LGEEYYQDSVVVTLKG 749
            LDL+ N F+G +P   F ++     N  A +   RY       + +E +    ++  +G
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK---RYVYIKNDGMKKECHGAGNLLEFQG 598
Query: 750 TEIEMQKILTV------------------------FTTIDFSSNGFDGEISQVIGKXXXX 785
              E    L+                            +D S N   G I + IG     
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658
Query: 786 XXXXXXXXXFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPXXXXXXXXXXXXXHNRLDG 845
                     +G IP  +G+L  L  LDLSSN + G+IP+              +N L G
Sbjct: 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718
Query: 846 PIPHGPQFNTFQEDSYIGNLGLCGFPLTK 874
           PIP   QF TF    ++ N GLCG+PL +
Sbjct: 719 PIPEMGQFETFPPAKFLNNPGLCGYPLPR 747

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  156 bits (394), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 178/629 (28%), Positives = 252/629 (40%), Gaps = 116/629 (18%)
Query: 285 LSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLN 344
           +S  V L +LD+SSN+F   IP + + + +   D+S N+L+G      S    L L+ ++
Sbjct: 193 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 252
Query: 345 NNSFSGTIPSWLFSLPL--LEYVRLSDNQLSGHIDEFPS---KSLQNIYLSNNRLQGSIP 399
           +N F G IP     LPL  L+Y+ L++N+ +G I +F S    +L  + LS N   G++P
Sbjct: 253 SNQFVGPIPP----LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Query: 400 SSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFS 459
                   L  L L SNNFSG        K+  LK L LS N  S               
Sbjct: 309 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS--------------G 354
Query: 460 YLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITK 519
            L  S  N+SA          L  LDLS N   G I                     +  
Sbjct: 355 ELPESLTNLSA---------SLLTLDLSSNNFSGPI---------------------LPN 384
Query: 520 MKQIPWKNLGYLDLRSNLLQGXXXXXXXXXXXXXISNNQFTGEIIHSICDIIALDVLDLS 579
           + Q P   L  L L+                     NN FTG+I  ++ +   L  L LS
Sbjct: 385 LCQNPKNTLQELYLQ---------------------NNGFTGKIPPTLSNCSELVSLHLS 423
Query: 580 NNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAXXXXXXXXXXXXXXXGGAIPQS 639
            N L+GTIP  +G+ S  L  L L  N L G IP                    G IP  
Sbjct: 424 FNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 482
Query: 640 LVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKE--SFPKLR 697
           L NCT +  + + N ++    P W+G L  L +L L +N F G++    P E      L 
Sbjct: 483 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI----PAELGDCRSLI 538
Query: 698 ILDLSINNFSGYLPER-FLENLNAMRNVSADEGKLRY-------LGEEYYQDSVVVTLKG 749
            LDL+ N F+G +P   F ++     N  A +   RY       + +E +    ++  +G
Sbjct: 539 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK---RYVYIKNDGMKKECHGAGNLLEFQG 595
Query: 750 TEIEMQKILTV------------------------FTTIDFSSNGFDGEISQVIGKXXXX 785
              E    L+                            +D S N   G I + IG     
Sbjct: 596 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 655
Query: 786 XXXXXXXXXFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPXXXXXXXXXXXXXHNRLDG 845
                     +G IP  +G+L  L  LDLSSN + G+IP+              +N L G
Sbjct: 656 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 715
Query: 846 PIPHGPQFNTFQEDSYIGNLGLCGFPLTK 874
           PIP   QF TF    ++ N GLCG+PL +
Sbjct: 716 PIPEMGQFETFPPAKFLNNPGLCGYPLPR 744

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 111/227 (48%), Gaps = 32/227 (14%)
Query: 281 IPSSLSNLVQLTYLDLSS-NSFFGEIP-DIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNL 338
           IPSSL+NL  L +L +   N+  G IP  I  LTQ+ +  +++  ++G IP   S+++ L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 339 VLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHI-DEFP--SKSLQNIYLSNNRLQ 395
           V +  + N+ SGT+P  + SLP L  +    N++SG I D +   SK   ++ +S NRL 
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 396 GSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPF 455
           G IP + F  +NL  + L  N   G A   +F      + ++L+ NSL+           
Sbjct: 188 GKIPPT-FANLNLAFVDLSRNMLEGDAS-VLFGSDKNTQKIHLAKNSLAF---------- 235
Query: 456 PKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEI 502
                + LS                L+ LDL  N+I G +P  ++++
Sbjct: 236 -DLGKVGLS--------------KNLNGLDLRNNRIYGTLPQGLTQL 267

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 90/246 (36%), Gaps = 13/246 (5%)
Query: 636 IPQSLVNCTKVEVLDIGNIK-INDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFP 694
           IP SL N   +  L IG I  +    P  +  L +L  L +      G++ +F       
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIK 125
Query: 695 KLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQD--SVVVTLKGTEI 752
            L  LD S N  SG LP   + +L  +  ++ D  ++     + Y     +  ++  +  
Sbjct: 126 TLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 753 EMQ-KILTVFTT-----IDFSSNGFDGEISQVIGKXXXXXXXXXXXXXFTGQIPSSLGNL 806
            +  KI   F       +D S N  +G+ S + G                  +   +G  
Sbjct: 185 RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLS 243
Query: 807 AKLESLDLSSNNVAGKIPKPXXXXXXXXXXXXXHNRLDGPIPHGPQFNTFQEDSYIGNLG 866
             L  LDL +N + G +P+               N L G IP G     F   +Y  N  
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
Query: 867 LCGFPL 872
           LCG PL
Sbjct: 304 LCGSPL 309

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 27/129 (20%)
Query: 317 FDLSNNQLAGPIPSHG-SRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGH 375
            DL +N+L+  +PS    RL  L L+ LN+N    T+P+ +F                  
Sbjct: 42  LDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFK----------------- 82
Query: 376 IDEFPSKSLQNIYLSNNRLQGSIPSSIF-ELVNLTDLQLDSNNFSGIAEPYMFAKLIKLK 434
                 K+L+ +++++N+LQ ++P  +F +LVNL +L+LD N    +  P +F  L KL 
Sbjct: 83  ----ELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLP-PRVFDSLTKLT 136
Query: 435 YLYLSHNSL 443
           YL L +N L
Sbjct: 137 YLSLGYNEL 145

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 77/152 (50%), Gaps = 9/152 (5%)
Query: 296 LSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSW 355
           +++NS    +  I  L  V +  L  N+L     S    L NL  + L  N    ++P+ 
Sbjct: 47  IANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNG 103
Query: 356 LF-SLPLLEYVRLSDNQLSGHIDEFPSK--SLQNIYLSNNRLQGSIPSSIFE-LVNLTDL 411
           +F  L  L+ + L +NQL    D    K  +L  +YL +N+LQ S+P  +F+ L NLT L
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRL 162
Query: 412 QLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSL 443
            LD+N    + E  +F KL +LK L L+ N L
Sbjct: 163 DLDNNQLQSLPEG-VFDKLTQLKQLSLNDNQL 193

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 58/202 (28%), Positives = 83/202 (41%), Gaps = 11/202 (5%)
Query: 280 HIPS-SLSNLVQLTYLDLSSNSFFGEIPDIFN-LTQVSFFDLSNN-QLAGPIPSHGSRLQ 336
           H+P+ S      LT L L SN         F  L  +   DLS+N QL    P+    L 
Sbjct: 45  HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 104
Query: 337 NLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSK--SLQNIYLSNNRL 394
            L  + L+        P     L  L+Y+ L DN L    D+      +L +++L  NR+
Sbjct: 105 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 164
Query: 395 QGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSP 454
             S+P   F  ++  D  L   N      P+ F  L +L  LYL  N+LS   T  + +P
Sbjct: 165 S-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL-AP 222
Query: 455 FPKFSYLSLS----ACNISAFP 472
                YL L+     C+  A P
Sbjct: 223 LRALQYLRLNDNPWVCDCRARP 244

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 58/202 (28%), Positives = 83/202 (41%), Gaps = 11/202 (5%)
Query: 280 HIPS-SLSNLVQLTYLDLSSNSFFGEIPDIFN-LTQVSFFDLSNN-QLAGPIPSHGSRLQ 336
           H+P+ S      LT L L SN         F  L  +   DLS+N QL    P+    L 
Sbjct: 46  HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105
Query: 337 NLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSK--SLQNIYLSNNRL 394
            L  + L+        P     L  L+Y+ L DN L    D+      +L +++L  NR+
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165
Query: 395 QGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSP 454
             S+P   F  ++  D  L   N      P+ F  L +L  LYL  N+LS   T  + +P
Sbjct: 166 S-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL-AP 223
Query: 455 FPKFSYLSLS----ACNISAFP 472
                YL L+     C+  A P
Sbjct: 224 LRALQYLRLNDNPWVCDCRARP 245

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 20/176 (11%)
Query: 293 YLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTI 352
           YL L  N    +I  +  LT +++  L+ NQL         +L NL  + L  N    ++
Sbjct: 67  YLALGGNKLH-DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SL 124
Query: 353 PSWLF-SLPLLEYVRLSDNQL----SGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE-LV 406
           P  +F  L  L Y+ L+ NQL     G  D+    +L  + LS N+LQ S+P  +F+ L 
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL--TNLTELDLSYNQLQ-SLPEGVFDKLT 181
Query: 407 NLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLS 462
            L DL+L  N    + +  +F +L  L+Y++L  N          D   P   YLS
Sbjct: 182 QLKDLRLYQNQLKSVPDG-VFDRLTSLQYIWLHDNPW--------DCTCPGIRYLS 228

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 19/156 (12%)
Query: 313 QVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFS-LPLLEYVRLSDNQ 371
           Q ++ DL  N L          L +L  + L  N    ++P+ +F+ L  L Y+ LS NQ
Sbjct: 29  QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQ 87
Query: 372 L----SGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYM 426
           L    +G  D+     L+ + L+ N+LQ S+P  +F+ L  L DL+L  N    + +  +
Sbjct: 88  LQSLPNGVFDKL--TQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDG-V 143
Query: 427 FAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLS 462
           F +L  L+Y++L  N          D   P   YLS
Sbjct: 144 FDRLTSLQYIWLHDNPW--------DCTCPGIRYLS 171

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 90/223 (40%), Gaps = 44/223 (19%)
Query: 331 HGSRL-----------QNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF 379
           HG+R+           +NL ++ L++N+ +G   +    L LLE + LSDN     +D  
Sbjct: 39  HGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVD-- 96
Query: 380 PSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLS 439
                              P++   L +L  L LD      +  P +F  L  L+YLYL 
Sbjct: 97  -------------------PTTFRGLGHLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQ 136
Query: 440 HNSLSL--GNTFKIDSPFPKFSYLSLSACNISAFPRF-LRTQDELSYLDLSENKIDGQIP 496
            N+L     NTF+        ++L L    I + P    R    L  L L +N +    P
Sbjct: 137 DNNLQALPDNTFR---DLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHP 193
Query: 497 SWISEIGKDSLSYV---NLSHNFITKMKQIPWKNLGYLDLRSN 536
               ++G+    Y+   NLS   +     +P ++L YL L  N
Sbjct: 194 HAFRDLGRLMTLYLFANNLS--MLPAEVLVPLRSLQYLRLNDN 234

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 11/143 (7%)
Query: 283 SSLSNLVQLTYLDLSSNSFFGEIPDIFN-LTQVSFFDLSNNQLAGPIPSHGSRLQNLVLI 341
           ++   L +LT+L+L  N        +F+ LT++    L+NNQLA         L  L  +
Sbjct: 53  ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112
Query: 342 RLNNNSFSGTIPSWLFS-LPLLEYVRLSDNQL----SGHIDEFPSKSLQNIYLSNNRLQG 396
            L  N    ++PS +F  L  L+ +RL+ NQL    +G  D+  +  LQ + LS N+LQ 
Sbjct: 113 YLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN--LQTLSLSTNQLQ- 168
Query: 397 SIPSSIFE-LVNLTDLQLDSNNF 418
           S+P   F+ L  L  + L  N F
Sbjct: 169 SVPHGAFDRLGKLQTITLFGNQF 191

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 11/143 (7%)
Query: 283 SSLSNLVQLTYLDLSSNSFFGEIPDIFN-LTQVSFFDLSNNQLAGPIPSHGSRLQNLVLI 341
           ++   L +LT+L+L  N        +F+ LT++    L+NNQLA         L  L  +
Sbjct: 53  ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112
Query: 342 RLNNNSFSGTIPSWLFS-LPLLEYVRLSDNQL----SGHIDEFPSKSLQNIYLSNNRLQG 396
            L  N    ++PS +F  L  L+ +RL+ NQL    +G  D+  +  LQ + LS N+LQ 
Sbjct: 113 YLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN--LQTLSLSTNQLQ- 168
Query: 397 SIPSSIFE-LVNLTDLQLDSNNF 418
           S+P   F+ L  L  + L  N F
Sbjct: 169 SVPHGAFDRLGKLQTITLFGNQF 191

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	901
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-108
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-58
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-77
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-72
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-62
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-76
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-70
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-67
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-66
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-54
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-49
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-42
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-67
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-63
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-53
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-66
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-61
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-57
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-65
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-61
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-58
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-43
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-33
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-21
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-62
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-54
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-54
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-40
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-31
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-52
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-44
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-46
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-46
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-45
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-42
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-40
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-38
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-41
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-30
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-30
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-30
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-24
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-24
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-28
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-25
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-23
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-22
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-21
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-19
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-15
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	7e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	8e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  556 bits (1436), Expect = 0.0
 Identities = 232/879 (26%), Positives = 345/879 (39%), Gaps = 141/879 (16%)

Query: 26  HCPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKDTNCCSWDGVTCDMATGNVIS 85
                +   LI FK +                    W  + N C++DGVTC      V S
Sbjct: 8   QSLYREIHQLISFKDVLPDKNLLP-----------DWSSNKNPCTFDGVTCR--DDKVTS 54

Query: 86  LDLSCSWLHGNIPT-NTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNI 144
           +DLS   L+      ++SL  L  L++L LS++  + S   SGF    +LT   LS +++
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS--VSGFKCSASLTSLDLSRNSL 112

Query: 145 NCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQN 204
           +  +             L SL + S  L  L++S   L     ++               
Sbjct: 113 SGPVT-----------TLTSLGSCSG-LKFLNVSSNTLDFPGKVSGG------------- 147

Query: 205 PSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASL--- 261
                                              L  L  L L  +   G         
Sbjct: 148 ---------------------------------LKLNSLEVLDLSANSISGANVVGWVLS 174

Query: 262 GNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSN 321
               +L  L +  N  SG +   +S  V L +LD+SSN+F   IP + + + +   D+S 
Sbjct: 175 DGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISG 232

Query: 322 NQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS 381
           N+L+G      S    L L+ +++N F G IP     L  L+Y+ L++N+ +G I +F S
Sbjct: 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLS 290

Query: 382 ---KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYL 438
               +L  + LS N   G++P        L  L L SNNFSG        K+  LK L L
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350

Query: 439 SHNSLSLGNTFKIDSPFPK-FSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPS 497
           S N  S           P+  + LS S                L  LDLS N   G I  
Sbjct: 351 SFNEFS--------GELPESLTNLSAS----------------LLTLDLSSNNFSGPILP 386

Query: 498 WISEIGKDSLSYVNLSHNFITKMKQIP-----WKNLGYLDLRSNLLQGPLPVPP---SSL 549
            + +  K++L  + L +N  T   +IP        L  L L  N L G +P      S L
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTG--KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444

Query: 550 RVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLN 609
           R L +  N   GEI   +  +  L+ L L  N L G IP  + N + +L+ + L NNRL 
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT-NLNWISLSNNRLT 503

Query: 610 GSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPE 669
           G IP        L  L L+NN   G IP  L +C  +  LD+     N   P  +     
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563

Query: 670 LQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEG 729
                + +N   G    +   +   K      ++  F G   E+                
Sbjct: 564 K----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL--------------N 605

Query: 730 KLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLN 789
           +L         +       G              +D S N   G I + IG +  L +LN
Sbjct: 606 RLSTR---NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662

Query: 790 LSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPH 849
           L HN  +G IP  +G+L  L  LDLSSN + G+IP+ +++LT L+ ++LS+N L GPIP 
Sbjct: 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722

Query: 850 GPQFNTFQEDSYIGNLGLCGFPLTKKCGNDEAPTTFHEE 888
             QF TF    ++ N GLCG+PL +   ++      H+ 
Sbjct: 723 MGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQR 761

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  347 bits (893), Expect = e-108
 Identities = 144/682 (21%), Positives = 245/682 (35%), Gaps = 47/682 (6%)

Query: 216 WTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHN 275
            T   E  D S    +++PD +     +  L L ++Q      A+    +QLT L +  N
Sbjct: 2   CTVSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 276 NFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQLAGPIPSHGSR 334
             S   P     L  L  L+L  N         F   T ++   L +N +     +   +
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 335 LQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDE----FPSKSLQNIYLS 390
            +NL+ + L++N  S T       L  L+ + LS+N++     E    F + SL+ + LS
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 391 NNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFA--KLIKLKYLYLSHNSLS-LGN 447
           +N+++   P     +  L  L L++          +        ++ L LS++ LS   N
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

Query: 448 TFKIDSPFPKFSYLSLSACNISAF-PRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDS 506
           T  +   +   + L LS  N++           +L Y  L  N I       +   G  +
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH--GLFN 297

Query: 507 LSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVP---PSSLRVLLISNNQFTGEI 563
           + Y+NL  +F                +    L             L  L + +N   G  
Sbjct: 298 VRYLNLKRSFTK------------QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK 345

Query: 564 IHSICDIIALDVLDLSNNRLNGTIPE---CIGNFSPSLSVLDLRNNRLNGSIPGTFAESN 620
            +    +I L  L LSN+  +         +      L +L+L  N+++      F+   
Sbjct: 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405

Query: 621 WLRSLNLNNNELGGAIP-QSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNK 679
            L  L+L  NE+G  +  Q       +  + +   K           +P LQ L+LR   
Sbjct: 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465

Query: 680 FHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYY 739
                    P +    L ILDLS NN +  + +  LE L  +  +      L  L +   
Sbjct: 466 LKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKH-- 522

Query: 740 QDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQI 799
                    G  I   K L+    ++  SNGFD    +V   L  L++++L  N+     
Sbjct: 523 ------ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576

Query: 800 PSSLGNLAKLESLDLSSNNVAGKIPKPL-TSLTSLSVLNLSHNRLDGPIPHGPQF----- 853
            S   N   L+SL+L  N +     K    +  +L+ L++  N  D        F     
Sbjct: 577 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 636

Query: 854 NTFQEDSYIGNLGLCGFPLTKK 875
            T      + +  LC  P    
Sbjct: 637 ETHTNIPELSSHYLCNTPPHYH 658

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  210 bits (536), Expect = 6e-58
 Identities = 103/563 (18%), Positives = 176/563 (31%), Gaps = 99/563 (17%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSD 141
           N+  L LS + +         +F    L+ L LS N          F     L    L++
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI-KEFSPGCFHAIGRLFGLFLNN 204

Query: 142 SNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRL 201
             +   +  ++            L+  ++S+ +LSLS+  L          L        
Sbjct: 205 VQLGPSLTEKL-----------CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN---- 249

Query: 202 SQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASL 261
                             +  LD+S  + + +                          S 
Sbjct: 250 ------------------LTMLDLSYNNLNVVG-----------------------NDSF 268

Query: 262 GNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSN 321
             L QL    L +NN       SL  L  + YL+L  +                   +S 
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ--------------SISL 314

Query: 322 NQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDE--- 378
             L          L+ L  + + +N   G   +    L  L+Y+ LS++  S        
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNET 374

Query: 379 ---FPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKY 435
                   L  + L+ N++      +   L +L  L L  N          +  L  +  
Sbjct: 375 FVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFE 434

Query: 436 LYLSHNSLSL--GNTFKIDSPFPKFSYLSLSACNISAF---PRFLRTQDELSYLDLSENK 490
           +YLS+N       N+F   +  P    L L    +      P   +    L+ LDLS N 
Sbjct: 435 IYLSYNKYLQLTRNSF---ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491

Query: 491 IDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLR 550
           I       +   G + L  ++L HN + ++ +          L+            S L 
Sbjct: 492 IANINDDMLE--GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL----------SHLH 539

Query: 551 VLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNG 610
           +L + +N F    +    D+  L ++DL  N LN        N   SL  L+L+ N +  
Sbjct: 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ-VSLKSLNLQKNLITS 598

Query: 611 SIPGTFAES-NWLRSLNLNNNEL 632
                F  +   L  L++  N  
Sbjct: 599 VEKKVFGPAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  100 bits (252), Expect = 4e-22
 Identities = 51/306 (16%), Positives = 94/306 (30%), Gaps = 52/306 (16%)

Query: 85  SLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNI 144
            L+L+ + +        +   L HL+ L+L  N+         +    N+    LS +  
Sbjct: 385 ILNLTKNKISKIESD--AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442

Query: 145 NCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQN 204
                   + +               SL  L L    L+      +   P+P        
Sbjct: 443 LQLTRNSFALV--------------PSLQRLMLRRVALKN-----VDSSPSP----FQPL 479

Query: 205 PSLAGKFPANNWTSPIEYLDVSETSFSELPDS-IGNLKLLGRL--------MLGYSQFVG 255
            +L               LD+S  + + + D  +  L+ L  L         L      G
Sbjct: 480 RNL-------------TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG 526

Query: 256 PVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQV 314
                L  L+ L +L+L  N F         +L +L  +DL  N+       +F N   +
Sbjct: 527 GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586

Query: 315 SFFDLSNNQLAGPIPSH-GSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLS 373
              +L  N +        G   +NL  + +  N F  T  S       + ++  +   + 
Sbjct: 587 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES---IAWFVNWINETHTNIP 643

Query: 374 GHIDEF 379
                +
Sbjct: 644 ELSSHY 649

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  264 bits (676), Expect = 1e-77
 Identities = 89/633 (14%), Positives = 182/633 (28%), Gaps = 105/633 (16%)

Query: 55  SYPKMISWKKDTNCCSW---DGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQT 111
                 +W  +     W    GV+ + + G V  L L      G +P   ++  L  L+ 
Sbjct: 53  GTQPGANWNFNKELDMWGAQPGVSLN-SNGRVTGLSLEGFGASGRVPD--AIGQLTELEV 109

Query: 112 LNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSS 171
           L L  +    +E   G                        + +           +   S 
Sbjct: 110 LALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDP---------REDFSD 160

Query: 172 LTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFS 231
           L    ++    Q +   +                                 +     + +
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLK------------------------DTQIGQLSNNIT 196

Query: 232 ELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQL 291
            +  ++  L  L +  +G S FV                                NL  L
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWDNLKDL 251

Query: 292 TYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQL--------AGPIPSHGSRLQNLVLIR 342
           T +++ +     ++P  +  L ++   +++ N+              +     + + +I 
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 343 LNNNSF-SGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS-KSLQNIYLSNNRLQGSIPS 400
           +  N+  +  + + L  +  L  +    NQL G +  F S   L ++ L+ N++     +
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPAN 371

Query: 401 SIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSY 460
                  + +L    N    I   +    +  +  +  S+N +                 
Sbjct: 372 FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG---------------- 415

Query: 461 LSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFIT-- 518
            S+   N             +S ++LS N+I        S      LS +NL  N +T  
Sbjct: 416 -SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG--SPLSSINLMGNMLTEI 472

Query: 519 ---KMKQIP-----WKNLGYLDLRSNLLQGPLPVPPS-------SLRVLLISNNQFTGEI 563
               +K           L  +DLR N L     +           L  + +S N F+   
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTK---LSDDFRATTLPYLVGIDLSYNSFSK-F 528

Query: 564 IHSICDIIALDVLDLSN------NRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFA 617
                +   L    + N      NR     PE I    PSL+ L + +N +   +     
Sbjct: 529 PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC-PSLTQLQIGSNDIR-KVNEKIT 586

Query: 618 ESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLD 650
            +  +  L++ +N         +    +  +  
Sbjct: 587 PN--ISVLDIKDNPNISIDLSYVCPYIEAGMYM 617

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  248 bits (636), Expect = 6e-72
 Identities = 90/633 (14%), Positives = 189/633 (29%), Gaps = 110/633 (17%)

Query: 236 SIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSG----HIPSSLSNLVQL 291
           S+ +   +  L L      G VP ++G LT+L +L L  +          P  +S  +  
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 292 TYLDLSSNSFFGEIPDIF---NLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSF 348
                    +     D     + + +    ++++     I            I   +N+ 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 349 SGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNL 408
           +  +   +  L  L    + ++           ++ +N      +   +       L +L
Sbjct: 196 TF-VSKAVMRLTKLRQFYMGNSPFVAEN---ICEAWENENSEYAQQYKTEDLKWDNLKDL 251

Query: 409 TDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNI 468
           TD+++ +        P     L +++ + ++ N    G   K D                
Sbjct: 252 TDVEVYNCPNLTKL-PTFLKALPEMQLINVACNRGISGEQLKDDWQAL----ADAPVGE- 305

Query: 469 SAFPRFLRTQDELSYLDLSENKI-DGQIPSWISEIGKDSLSYVNLSHNFITKMKQIP--- 524
                      ++  + +  N +    + + + ++    L  +   +N +    ++P   
Sbjct: 306 -----------KIQIIYIGYNNLKTFPVETSLQKM--KKLGMLECLYNQLEG--KLPAFG 350

Query: 525 -WKNLGYLDLRSNLLQGPLPVPPS------SLRVLLISNNQFTG-EIIHSICDIIALDVL 576
               L  L+L  N +     +P +       +  L  ++N+      I     +  +  +
Sbjct: 351 SEIKLASLNLAYNQITE---IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAI 407

Query: 577 DLSNNRLNGTIPECIGNFSP------SLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNN 630
           D S N +     +      P      ++S ++L NN+++      F+  + L S+NL  N
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467

Query: 631 ELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPK 690
            L      SL +                       N   L  + LR NK      +F   
Sbjct: 468 MLTEIPKNSLKD-----------------ENENFKNTYLLTSIDLRFNKLTKLSDDFR-A 509

Query: 691 ESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGT 750
            + P L  +DLS N+FS   P +                    L                
Sbjct: 510 TTLPYLVGIDLSYNSFSK-FPTQP--------------LNSSTL---------------- 538

Query: 751 EIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLE 810
                K   +    D   N    E  + I    SL  L +  N     +   +     + 
Sbjct: 539 -----KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNIS 590

Query: 811 SLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRL 843
            LD+  N         +       +  L +++ 
Sbjct: 591 VLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  222 bits (568), Expect = 1e-62
 Identities = 88/674 (13%), Positives = 183/674 (27%), Gaps = 155/674 (22%)

Query: 169 SSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTS-----PIEYL 223
           +  +T LSL      G  P  I  L   +++ L  +                     E  
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSH-GEKVNERLFGPKGISANMSDEQK 138

Query: 224 DVSETSFSEL-PDSIGNLKL--LGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGH 280
                 + +   D         L +  +        +  S     + T +  + NN +  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF- 197

Query: 281 IPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVL 340
           +  ++  L +L    + ++ F  E        +    +    Q           L++L  
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE----NSEYAQQYKTEDLKWDNLKDLTD 253

Query: 341 IRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPS 400
           + + N      +P++L +LP ++ + ++ N+                     +      +
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS--------------GEQLKDDWQALA 299

Query: 401 SIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSY 460
                  +  + +  NN           K+ KL  L   +N L            P F  
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE--------GKLPAFGS 351

Query: 461 LSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKM 520
                              +L+ L+L+ N+I     ++        +  ++ +HN +   
Sbjct: 352 EI-----------------KLASLNLAYNQITEIPANFCGFTE--QVENLSFAHNKLK-- 390

Query: 521 KQIP-------WKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIAL 573
             IP          +  +D   N +               +    F   +  +    I +
Sbjct: 391 -YIPNIFDAKSVSVMSAIDFSYNEIGS-------------VDGKNFDP-LDPTPFKGINV 435

Query: 574 DVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNG-------SIPGTFAESNWLRSLN 626
             ++LSNN+++    E     S  LS ++L  N L              F  +  L S++
Sbjct: 436 SSINLSNNQISKFPKELFSTGS-PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494

Query: 627 LNNNELGGAIPQSLV--NCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSV 684
           L  N+L   +           +  +D+     +  FP    N   L+   +R+       
Sbjct: 495 LRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ------ 546

Query: 685 REFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVV 744
                          D   N      PE                     L          
Sbjct: 547 --------------RDAQGNRTLREWPEGI--------------TLCPSL---------- 568

Query: 745 VTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLG 804
                            T +   SN     +++ I    ++ +L++  N       S + 
Sbjct: 569 -----------------TQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVC 608

Query: 805 NLAKLESLDLSSNN 818
              +     L  + 
Sbjct: 609 PYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  193 bits (493), Expect = 2e-52
 Identities = 79/588 (13%), Positives = 173/588 (29%), Gaps = 142/588 (24%)

Query: 274 HNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGP----I 328
            + +      SL++  ++T L L      G +PD I  LT++    L ++          
Sbjct: 66  LDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFG 125

Query: 329 PSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIY 388
           P   S   +    +     +  T   +                            L    
Sbjct: 126 PKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS--------------------DLIKDC 165

Query: 389 LSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNT 448
           ++++  Q SI  S    +  T +   SNN + +       +L KL+  Y+ +      + 
Sbjct: 166 INSDPQQKSIKKSSRITLKDTQIGQLSNNITFV--SKAVMRLTKLRQFYMGN------SP 217

Query: 449 FKIDSPFPKFSYLSLSACNISA-FPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSL 507
           F  ++    +   +                  +L+ +++       ++P+++  +    +
Sbjct: 218 FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP--EM 275

Query: 508 SYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFT-GEIIHS 566
             +N++ N     +Q+            +            ++++ I  N      +  S
Sbjct: 276 QLINVACNRGISGEQLK----------DDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325

Query: 567 ICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLN 626
           +  +  L +L+   N+L G +P   G+    L+ L+L  N++          +  + +L+
Sbjct: 326 LQKMKKLGMLECLYNQLEGKLPA-FGSEI-KLASLNLAYNQITEIPANFCGFTEQVENLS 383

Query: 627 LNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVRE 686
             +N+L   IP            D  ++                                
Sbjct: 384 FAHNKLKY-IPNIF---------DAKSVS------------------------------- 402

Query: 687 FEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVT 746
                    +  +D S N       + F         +     K   +            
Sbjct: 403 --------VMSAIDFSYNEIGSVDGKNF-------DPLDPTPFKGINV------------ 435

Query: 747 LKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTG-------QI 799
                          ++I+ S+N       ++      L  +NL  N  T          
Sbjct: 436 ---------------SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480

Query: 800 PSSLGNLAKLESLDLSSNNVAGKIPKPL--TSLTSLSVLNLSHNRLDG 845
             +  N   L S+DL  N +   +      T+L  L  ++LS+N    
Sbjct: 481 NENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK 527

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.7 bits (236), Expect = 3e-20
 Identities = 29/248 (11%), Positives = 76/248 (30%), Gaps = 27/248 (10%)

Query: 622 LRSLNLNNNELGGAIPQSLVNCTKVEVLDIGN----IKINDAFPYWLGNLPELQVLVLRS 677
           +  L+L      G +P ++   T++EVL +G+    +      P  +      +      
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 678 NKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEE 737
             +  +  +++P+E F  L    ++ +     + +     L     +      + ++ + 
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK-DTQIGQLSNNITFVSKA 201

Query: 738 YYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTG 797
             +                 LT        ++ F  E      +  +             
Sbjct: 202 VMR-----------------LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT---- 240

Query: 798 QIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQ 857
                  NL  L  +++ +     K+P  L +L  + ++N++ NR          +    
Sbjct: 241 -EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299

Query: 858 EDSYIGNL 865
           +      +
Sbjct: 300 DAPVGEKI 307

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.1 bits (154), Expect = 3e-10
 Identities = 14/116 (12%), Positives = 29/116 (25%), Gaps = 7/116 (6%)

Query: 762 TTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQ----IPSSLGNLAKLESLDLSSN 817
           T +     G  G +   IG+L  L +L L  +          P  +      E       
Sbjct: 84  TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRM 143

Query: 818 NVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLT 873
           +                  +L  + ++          + +       +G     +T
Sbjct: 144 HYQKTFV---DYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  259 bits (665), Expect = 3e-76
 Identities = 118/642 (18%), Positives = 199/642 (30%), Gaps = 118/642 (18%)

Query: 220 IEYLDVSETSFSEL-PDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFS 278
            + LD+S      L   S  +   L  L L   +       +  +L+ L+ L L  N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 279 GHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQLAG-PIPSHGSRLQ 336
                + S L  L  L     +          +L  +   ++++N +    +P + S L 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 337 NLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQG 396
           NL  + L++N       + L  L  +  + LS                  + LS N +  
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS------------------LDLSLNPMNF 191

Query: 397 SIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFP 456
            I    F+ + L  L L +N  S          L  L+   L                F 
Sbjct: 192 -IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL---EKFD 247

Query: 457 KFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNF 516
           K +   L    I  F         L+YLD   + I        +      +S  +L    
Sbjct: 248 KSALEGLCNLTIEEF--------RLAYLDYYLDDIIDLFNCLTN------VSSFSLVSVT 293

Query: 517 ITKMKQIPW-KNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDV 575
           I ++K   +     +L+L +        +   SL+ L  ++N+       S  D+ +L+ 
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN--AFSEVDLPSLEF 351

Query: 576 LDLSNNRLN--GTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELG 633
           LDLS N L+  G   +     + SL  LDL  N +   +   F     L  L+  ++ L 
Sbjct: 352 LDLSRNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK 409

Query: 634 GAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESF 693
                S+                         +L  L  L +       +         F
Sbjct: 410 QMSEFSV-----------------------FLSLRNLIYLDISHTHTRVA-----FNGIF 441

Query: 694 ---PKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGT 750
                L +L ++ N+F           L  +                             
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLT---------------------------- 473

Query: 751 EIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLE 810
                        +D S    +         L SL++LN+SHN+F          L  L+
Sbjct: 474 ------------FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521

Query: 811 SLDLSSNNVAGKIPKPLTSL-TSLSVLNLSHNRLDGPIPHGP 851
            LD S N++     + L    +SL+ LNL+ N       H  
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS 563

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  244 bits (625), Expect = 1e-70
 Identities = 119/577 (20%), Positives = 199/577 (34%), Gaps = 39/577 (6%)

Query: 166 KNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPA--NNWTSPIEYL 223
            NL  S  +L LS   L+     + F  P  Q++ LS+   +         + +  +  L
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSH-LSTL 81

Query: 224 DVSETSFSEL-PDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNF-SGHI 281
            ++      L   +   L  L +L+   +         +G+L  L  L++ HN   S  +
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 282 PSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFF----DLSNNQLAGPIPSHGSRLQ 336
           P   SNL  L +LDLSSN            L Q+       DLS N +    P     + 
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI- 200

Query: 337 NLVLIRLNNNSFSGTIPSWLF-SLPLLEYVRLSDNQLSGH-----IDEFPSKSLQNIYLS 390
            L  + L NN  S  +       L  LE  RL   +          D+   + L N+ + 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 391 NNRLQ------GSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS 444
             RL         I      L N++   L S     + +   F+     ++L L +    
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFG 317

Query: 445 LGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGK 504
                           L+ ++         +     L +LDLS N +  +     S+ G 
Sbjct: 318 Q----FPTLKLKSLKRLTFTSNKGGNAFSEVDLP-SLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 505 DSLSYVNLSHNFITKM--KQIPWKNLGYLDLRSNLLQGPLPVPP----SSLRVLLISNNQ 558
            SL Y++LS N +  M    +  + L +LD + + L+            +L  L IS+  
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 559 FTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAE 618
                      + +L+VL ++ N         I     +L+ LDL   +L    P  F  
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 619 SNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPE-LQVLVLRS 677
            + L+ LN+++N               ++VLD     I  +    L + P  L  L L  
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

Query: 678 NKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERF 714
           N F  +       +     R L + +       P   
Sbjct: 553 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  234 bits (599), Expect = 5e-67
 Identities = 108/608 (17%), Positives = 191/608 (31%), Gaps = 110/608 (18%)

Query: 257 VPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVS 315
           +P +L        L L  N        S  +  +L  LDLS           + +L+ +S
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 316 FFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQL-SG 374
              L+ N +        S L +L  +     + +      +  L  L+ + ++ N + S 
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 375 HIDEF--PSKSLQNIYLSNNRLQGSIPSSIFELVNLT----DLQLDSNNFSGIAEPYMFA 428
            + E+     +L+++ LS+N++Q    + +  L  +      L L  N  + I +P  F 
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAF- 197

Query: 429 KLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQ----DELSYL 484
           K I+L  L L +N  SL                 L            +      + L  L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 485 DLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPV 544
            + E                  L+Y++   + I  +      N+    L S  ++     
Sbjct: 258 TIEEF----------------RLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIERVKDF 300

Query: 545 PP-SSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDL 603
                 + L + N +F          + +L  L  ++N+      E      PSL  LDL
Sbjct: 301 SYNFGWQHLELVNCKFGQ---FPTLKLKSLKRLTFTSNKGGNAFSEV---DLPSLEFLDL 354

Query: 604 RNNRLN--GSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFP 661
             N L+  G    +   +  L+ L+L+ N +                             
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-------------------------MS 389

Query: 662 YWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAM 721
                L +L+ L  + +       EF    S   L  LD+S  +        F       
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHTHTRVAFNGIF------- 441

Query: 722 RNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEI-SQVIG 780
                    L  L                             +  + N F       +  
Sbjct: 442 -------NGLSSL---------------------------EVLKMAGNSFQENFLPDIFT 467

Query: 781 KLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSH 840
           +L +L  L+LS        P++  +L+ L+ L++S NN       P   L SL VL+ S 
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 527

Query: 841 NRLDGPIP 848
           N +     
Sbjct: 528 NHIMTSKK 535

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  231 bits (590), Expect = 7e-66
 Identities = 104/585 (17%), Positives = 166/585 (28%), Gaps = 93/585 (15%)

Query: 272 LMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQLAGPIPS 330
            M  NF   IP +L        LDLS N         F +  ++   DLS  ++      
Sbjct: 14  CMELNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 331 HGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF--PSKSLQNIY 388
               L +L  + L  N            L  L+ +   +  L+   +      K+L+ + 
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 389 LSNNRLQG-SIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGN 447
           +++N +Q   +P     L NL  L L SN    I        L ++  L LS        
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLS-------- 181

Query: 448 TFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSL 507
                        L LS   ++        +  L  L L  N     +     + G   L
Sbjct: 182 -------------LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ-GLAGL 227

Query: 508 SYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSI 567
               L          +   +   L+   NL         +     L   + +  +II   
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNL---------TIEEFRLAYLDYYLDDIIDLF 278

Query: 568 CDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNL 627
             +  +    L +  +         +++     L+L N +              L   + 
Sbjct: 279 NCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN 335

Query: 628 NNNELGGAIPQSLVNCTKVEVLDIGNIKIN--DAFPYWLGNLPELQVLVLRSNKFHGSVR 685
                      S V+   +E LD+    ++              L+ L L  N       
Sbjct: 336 KGG-----NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390

Query: 686 EFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVV 745
            F       +L  LD   +N           +L            L YL           
Sbjct: 391 NFL---GLEQLEHLDFQHSNLKQMSEFSVFLSLR----------NLIYL----------- 426

Query: 746 TLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQI-PSSLG 804
                              D S        + +   L SL +L ++ N F     P    
Sbjct: 427 -------------------DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 805 NLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPH 849
            L  L  LDLS   +    P    SL+SL VLN+SHN        
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  199 bits (508), Expect = 1e-54
 Identities = 108/571 (18%), Positives = 181/571 (31%), Gaps = 90/571 (15%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSD 141
           ++  L    + L         + HL  L+ LN++HN     ++   FS   NL H  LS 
Sbjct: 101 SLQKLVAVETNLASLENF--PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 142 SNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRL 201
           + I      +          L  L  +     SL LS   +        F       + L
Sbjct: 159 NKIQSIYCTD----------LRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTL 207

Query: 202 SQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASL 261
             N                  L+V +T    L   +   +L+               ++L
Sbjct: 208 RNNFDS---------------LNVMKTCIQGLA-GLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 262 GNLTQLTLLHLMHNN---FSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFD 318
             L  LT+          +   I    + L  ++   L S +    + D          +
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNFGWQHLE 310

Query: 319 LSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLS----G 374
           L N +           L+ L        S  G        LP LE++ LS N LS     
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTF-----TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 365

Query: 375 HIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLK 434
              +F + SL+ + LS N +   + S+   L  L  L    +N   ++E  +F  L  L 
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 435 YLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQ 494
           YL +SH                             AF         L  L ++ N     
Sbjct: 425 YLDISHTHTR------------------------VAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 495 IPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLI 554
               I    + +L++++LS   +    Q+       L               SSL+VL +
Sbjct: 461 FLPDIFTELR-NLTFLDLSQCQLE---QLSPTAFNSL---------------SSLQVLNM 501

Query: 555 SNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPG 614
           S+N F          + +L VLD S N +  +  + + +F  SL+ L+L  N    +   
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE- 560

Query: 615 TFAESNWLRSLN---LNNNELGGAIPQSLVN 642
             +   W++      +    +  A P     
Sbjct: 561 HQSFLQWIKDQRQLLVEVERMECATPSDKQG 591

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  183 bits (466), Expect = 4e-49
 Identities = 97/550 (17%), Positives = 166/550 (30%), Gaps = 113/550 (20%)

Query: 317 FDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHI 376
           +            +     +NL    L+ N          FS P L+ + LS  ++    
Sbjct: 12  YQCMELNFYKIPDNLPFSTKNL---DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 377 DEF--PSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLK 434
           D        L  + L+ N +Q     +   L +L  L     N + + E +    L  LK
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLK 127

Query: 435 YLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQ 494
            L ++HN +    +FK+   F   +                     L +LDLS NKI   
Sbjct: 128 ELNVAHNLIQ---SFKLPEYFSNLT--------------------NLEHLDLSSNKIQSI 164

Query: 495 IPSWISEIGKDSLSYV--NLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVL 552
             + +  + +  L  +  +LS N +  ++   +K +                    L  L
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-------------------RLHKL 205

Query: 553 LISNNQFTGEIIHSIC-DIIALDVLDLSNNRLNGT--IPECIGNFSPSLSVLDLRNNRLN 609
            + NN  +  ++ +    +  L+V  L          + +   +    L  L +   RL 
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 610 ------GSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYW 663
                   I   F     + S +L +  +      S       + L++ N K        
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQFPTLK 323

Query: 664 LGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSIN--NFSGYLPERFLENLNAM 721
           L +L  L     +             +   P L  LDLS N  +F G   +      +  
Sbjct: 324 LKSLKRLTFTSNKGGNAF-------SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS-- 374

Query: 722 RNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGK 781
                    L+YL                              D S NG    +S     
Sbjct: 375 ---------LKYL------------------------------DLSFNGVIT-MSSNFLG 394

Query: 782 LHSLRLLNLSHNHFTGQIPSS-LGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSH 840
           L  L  L+  H++       S   +L  L  LD+S  +           L+SL VL ++ 
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 841 NRLDGPIPHG 850
           N         
Sbjct: 455 NSFQENFLPD 464

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  161 bits (409), Expect = 9e-42
 Identities = 89/495 (17%), Positives = 132/495 (26%), Gaps = 98/495 (19%)

Query: 365 VRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEP 424
            +  +       D  P  S +N+ LS N L+     S F    L  L L       I E 
Sbjct: 12  YQCMELNFYKIPDNLPF-STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-ED 69

Query: 425 YMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYL 484
             +  L  L  L L+ N +              FS LS                  L  L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQ-------SLALGAFSGLS-----------------SLQKL 105

Query: 485 DLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPV 544
              E  +       I  +   +L  +N++HN I   K    +    L             
Sbjct: 106 VAVETNLASLENFPIGHLK--TLKELNVAHNLIQSFK--LPEYFSNL------------- 148

Query: 545 PPSSLRVLLISNNQFTGEIIHSICDIIALDV----LDLSNNRLNGTIPECIGNFSPSLSV 600
             ++L  L +S+N+        +  +  + +    LDLS N +N   P         L  
Sbjct: 149 --TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR--LHK 204

Query: 601 LDLRNNRLNGSIP-GTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDA 659
           L LRNN  + ++          L    L   E                        +   
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN------------------EGNLEKF 246

Query: 660 FPYWLGNLPELQVLVLRSNKFHGSVREFEPK-ESFPKLRILDLSINNFSGYLPERFLENL 718
               L  L  L +   R       + +          +    L            +    
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 306

Query: 719 NAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQV 778
                       L  +             K  +      L     + F+SN      S  
Sbjct: 307 Q----------HLELVN-----------CKFGQFP-TLKLKSLKRLTFTSNKGGNAFS-- 342

Query: 779 IGKLHSLRLLNLSHNH--FTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVL 836
              L SL  L+LS N   F G    S      L+ LDLS N V   +      L  L  L
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 401

Query: 837 NLSHNRLDGPIPHGP 851
           +  H+ L        
Sbjct: 402 DFQHSNLKQMSEFSV 416

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  121 bits (305), Expect = 1e-28
 Identities = 66/359 (18%), Positives = 110/359 (30%), Gaps = 59/359 (16%)

Query: 526 KNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNG 585
            N+ Y  +  N  + P  +P S  + L +S N       +S      L VLDLS   +  
Sbjct: 8   PNITYQCMELNFYKIPDNLPFS-TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 586 TIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTK 645
                  + S  LS L L  N +     G F+  + L+ L      L       + +   
Sbjct: 67  IEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 646 VEVLDIGNIKINDA-FPYWLGNLPELQVLVLRSNKFHGSVRE-FEPKESFPKLRI-LDLS 702
           ++ L++ +  I     P +  NL  L+ L L SNK               P L + LDLS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 703 INNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFT 762
           +N  +   P  F + +                                            
Sbjct: 186 LNPMNFIQPGAF-KEIR-----------------------------------------LH 203

Query: 763 TIDFSSNGFDGEISQ-VIGKLHSLRLLNLSHNHFTGQ------IPSSLGNLAKLESLDLS 815
            +   +N     + +  I  L  L +  L    F  +        S+L  L  L   +  
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 816 SNNV---AGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFP 871
              +      I      LT++S  +L    ++        +N   +   + N     FP
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF--SYNFGWQHLELVNCKFGQFP 320

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  120 bits (302), Expect = 3e-28
 Identities = 57/303 (18%), Positives = 99/303 (32%), Gaps = 41/303 (13%)

Query: 65  DTNCCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEI 124
                       ++   ++  LDLS + L      + S F    L+ L+LS N      +
Sbjct: 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITM 388

Query: 125 SSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQG 184
           SS F     L H     SN+     + +              +L  +L  L +S    + 
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSV------------FLSL-RNLIYLDISHTHTRV 435

Query: 185 NFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLG 244
            F      L + ++++++ N S    F                      PD    L+ L 
Sbjct: 436 AFNGIFNGLSSLEVLKMAGN-SFQENFL---------------------PDIFTELRNLT 473

Query: 245 RLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGE 304
            L L   Q     P +  +L+ L +L++ HNNF          L  L  LD S N     
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533

Query: 305 IPDIF--NLTQVSFFDLSNNQLAGPIPSHGSR--LQNLVLIRLNNNSFSGTIPSWLFSLP 360
                    + ++F +L+ N  A           +++   + +         PS    +P
Sbjct: 534 KKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 593

Query: 361 LLE 363
           +L 
Sbjct: 594 VLS 596

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  236 bits (603), Expect = 1e-67
 Identities = 111/592 (18%), Positives = 198/592 (33%), Gaps = 63/592 (10%)

Query: 270 LHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQLAGPI 328
            +  +   +  IP +L N      L+ S N         F  L  ++F DL+  Q+    
Sbjct: 17  YNCENLGLN-EIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 329 PSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF--PSKSLQN 386
                    L  + L  N       + L     L+++      +S          K+L++
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133

Query: 387 IYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLG 446
           +YL +N +        F    L  L   +N    +      + L +   L L+ N   + 
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL-SKEDMSSLQQATNLSLNLNGNDIA 192

Query: 447 NTFKIDSPFPKFSYLSLSACNISAFP---RFLRTQDELSYLDLSENKIDGQIPSWISEIG 503
                      F  L+                 T   L      +   +   P+    + 
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252

Query: 504 KDSLSYVNLSHNFITKMKQ---IPWKNLGYLDLRSNLLQGPLP--VPPSSLRVLLISNNQ 558
           + S+  +NL  ++   +       +  L  LDL +  L       V  S+L+ L++S N+
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK 312

Query: 559 FTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGS--IPGTF 616
           F      S  +  +L  L +  N     +         +L  LDL ++ +  S       
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372

Query: 617 AESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPY-WLGNLPELQVLVL 675
              + L+SLNL+ NE      ++   C ++E+LD+   ++          NL  L+VL L
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432

Query: 676 RSNKFHGSVREFEPKESFPKLRILDLSINNFSG--YLPERFLENLNAMRNVSADEGKLRY 733
             +    S  +    +  P L+ L+L  N+F          L+ L          G+L  
Sbjct: 433 SHSLLDISSEQL--FDGLPALQHLNLQGNHFPKGNIQKTNSLQTL----------GRLEI 480

Query: 734 LGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHN 793
           L                                S              L  +  ++LSHN
Sbjct: 481 L------------------------------VLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510

Query: 794 HFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDG 845
             T     +L +L  +  L+L+SN+++  +P  L  L+    +NL  N LD 
Sbjct: 511 RLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  224 bits (573), Expect = 2e-63
 Identities = 97/540 (17%), Positives = 175/540 (32%), Gaps = 30/540 (5%)

Query: 167 NLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVS 226
            L +S   L  S  +L          L N   + L++                ++ L ++
Sbjct: 30  TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89

Query: 227 ETSFSELPDSI-GNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSL 285
                 + ++     K L  L    +         L N   L  L+L  N+ S       
Sbjct: 90  ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG 149

Query: 286 SNLVQLTYLDLSSNSFFGEIPDIF-NLT--QVSFFDLSNNQLAGPIPSHGSRLQNLVLIR 342
               +L  LD  +N+      +   +L        +L+ N +AG I            + 
Sbjct: 150 FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLN 208

Query: 343 LNNNSFSGTIPSWLFSLPL--LEYVRLSDNQLS----GHIDEFPSKSLQNIYLSNNRLQG 396
                    I   L +  +  L      D           +     S+++I L  +    
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268

Query: 397 SIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSL--GNTFKIDSP 454
              ++      L +L L + + S +  P     L  LK L LS N        +    S 
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLSEL--PSGLVGLSTLKKLVLSANKFENLCQISA---SN 323

Query: 455 FPKFSYLSLSACNISAF--PRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNL 512
           FP  ++LS+             L   + L  LDLS + I+      +       L  +NL
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 513 SHNFITKMKQIPWKNLG---YLDLRSNLLQGPLP----VPPSSLRVLLISNNQFTGEIIH 565
           S+N    +K   +K       LDL    L+             L+VL +S++        
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443

Query: 566 SICDIIALDVLDLSNNRLNGTIPECIGNFS--PSLSVLDLRNNRLNGSIPGTFAESNWLR 623
               + AL  L+L  N       +   +      L +L L    L+      F     + 
Sbjct: 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503

Query: 624 SLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGS 683
            ++L++N L  +  ++L +   +  L++ +  I+   P  L  L + + + LR N    +
Sbjct: 504 HVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  219 bits (560), Expect = 1e-61
 Identities = 102/530 (19%), Positives = 186/530 (35%), Gaps = 37/530 (6%)

Query: 220 IEYLDVSETSFSEL-PDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFS 278
            E L+ S      +   +   L  L  L L   Q       +  +  +L  L L  N   
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 279 GHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQLAGPIPSHGSRLQN 337
               ++LS    L +L                N   +    L +N ++      G   + 
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154

Query: 338 LVLIRLNNNSFSGTIPSWLFSLPLLE--YVRLSDNQLSGHIDE-FPSKSLQNIYLSNNRL 394
           L ++   NN+        + SL       + L+ N ++G     F S   Q++     + 
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214

Query: 395 QGSIPSSIF--ELVNLTDLQLDSNNFSGIAEPYMFAKL--IKLKYLYLSHNSLS--LGNT 448
              I   +    + +L     +  +   I  P +F  L  + ++ + L  +       NT
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDI-SPAVFEGLCEMSVESINLQKHYFFNISSNT 273

Query: 449 FKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLS 508
           F     F     L L+A ++S  P  L     L  L LS NK +       S     SL+
Sbjct: 274 F---HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFP--SLT 328

Query: 509 YVNLSHN-FITKMKQIPWKNLG---YLDLRSNLLQGPLPVPPS-----SLRVLLISNNQF 559
           ++++  N    ++     +NL     LDL  + ++              L+ L +S N+ 
Sbjct: 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388

Query: 560 TGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAES 619
                 +  +   L++LDL+  RL     +        L VL+L ++ L+ S    F   
Sbjct: 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448

Query: 620 NWLRSLNLNNNELGGAIPQ---SLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLR 676
             L+ LNL  N       Q   SL    ++E+L +    ++    +   +L  +  + L 
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508

Query: 677 SNKFHGSVREFEPKESFPKLR--ILDLSINNFSGYLPERFLENLNAMRNV 724
            N+           E+   L+   L+L+ N+ S  +    L  L+  R +
Sbjct: 509 HNRLTS-----SSIEALSHLKGIYLNLASNHISI-ILPSLLPILSQQRTI 552

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  205 bits (523), Expect = 1e-56
 Identities = 92/572 (16%), Positives = 177/572 (30%), Gaps = 67/572 (11%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSD 141
           +   L+ S + L     T  +   L++L  L+L+            F     L    L+ 
Sbjct: 34  STECLEFSFNVLPTIQNT--TFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTA 90

Query: 142 SNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRL 201
           + +               +   +L    + L  L      +     I + +    + + L
Sbjct: 91  NPL-------------IFMAETALSGPKA-LKHLFFIQTGISSIDFIPLHNQKTLESLYL 136

Query: 202 SQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASL 261
             N   + K P    T  ++ LD    +   L                           +
Sbjct: 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS-----------------------KEDM 173

Query: 262 GNLTQLTLLHL-MHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF---NLTQVSFF 317
            +L Q T L L ++ N    I     +      L+         I        +  +   
Sbjct: 174 SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG 233

Query: 318 DLSNNQLAGPIPS--HGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGH 375
              +       P+   G    ++  I L  + F     +       L+ + L+   LS  
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL 293

Query: 376 IDEFPS-KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLK 434
                   +L+ + LS N+ +     S     +LT L +  N             L  L+
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353

Query: 435 YLYLSHNSLS-LGNTFKIDSPFPKFSYLSLSACNISAFPR-FLRTQDELSYLDLSENKID 492
            L LSH+ +                  L+LS     +      +   +L  LDL+  ++ 
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413

Query: 493 GQIPSWISEIGKDSLSYVNLSHNFITKMKQIPW------KNLGYLDLRSNLLQGPLPVPP 546
               +         L  +NLSH+ +                L +L+L+ N          
Sbjct: 414 V-KDAQSPFQNLHLLKVLNLSHSLLD---ISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469

Query: 547 ------SSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSV 600
                   L +L++S    +    H+   +  ++ +DLS+NRL  +  E + +       
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK--GIY 527

Query: 601 LDLRNNRLNGSIPGTFAESNWLRSLNLNNNEL 632
           L+L +N ++  +P      +  R++NL  N L
Sbjct: 528 LNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  194 bits (496), Expect = 5e-53
 Identities = 89/570 (15%), Positives = 188/570 (32%), Gaps = 49/570 (8%)

Query: 85  SLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNI 144
            LDL+   ++       +      L TL L+ N        +  S  + L H     + I
Sbjct: 61  FLDLTRCQIYWIHED--TFQSQHRLDTLVLTANPL-IFMAETALSGPKALKHLFFIQTGI 117

Query: 145 NCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQN 204
           +      +   K              +L SL L    +        F     +++    N
Sbjct: 118 SSIDFIPLHNQK--------------TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163

Query: 205 P--SLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLG 262
               L+ +  ++   +    L+++    + +     +  +   L  G +Q +  +   L 
Sbjct: 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLK 223

Query: 263 N--LTQLTLLHLMHNNFSGHIPSSLSNL--VQLTYLDLSSNSFFGEIPDIF-NLTQVSFF 317
           N  +  L L      +     P+    L  + +  ++L  + FF    + F   + +   
Sbjct: 224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL 283

Query: 318 DLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHID 377
           DL+   L+  +PS    L  L  + L+ N F         + P L ++ +  N     + 
Sbjct: 284 DLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342

Query: 378 EF---PSKSLQNIYLSNNRLQGS--IPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIK 432
                  ++L+ + LS++ ++ S      +  L +L  L L  N    + +   F +  +
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL-KTEAFKECPQ 401

Query: 433 LKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFP-RFLRTQDELSYLDLSENKI 491
           L+ L L+   L + +             L+LS   +     +       L +L+L  N  
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461

Query: 492 DGQIPSWISEIGK-DSLSYVNLSHNFITKMKQIPW------KNLGYLDLRSNLLQG--PL 542
                   + +     L  + LS   ++    I        K + ++DL  N L      
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLS---SIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518

Query: 543 PVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLD 602
            +       L +++N  +  +   +  +     ++L  N L+     C  +    L    
Sbjct: 519 ALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLD-----CTCSNIYFLEWYK 573

Query: 603 LRNNRLNGSIPGTFAESNWLRSLNLNNNEL 632
               +L  +          LR + L++  L
Sbjct: 574 ENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  191 bits (488), Expect = 5e-52
 Identities = 94/502 (18%), Positives = 155/502 (30%), Gaps = 64/502 (12%)

Query: 365 VRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEP 424
               +  L+      P+ S + +  S N L     ++   L+NLT L L       I   
Sbjct: 17  YNCENLGLNEIPGTLPN-STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HE 74

Query: 425 YMFAKLIKLKYLYLSHNSLS--LGNTFKIDSPFPKFSYLSLSACNISAF-PRFLRTQDEL 481
             F    +L  L L+ N L           S      +L      IS+     L  Q  L
Sbjct: 75  DTFQSQHRLDTLVLTANPLIFMAETAL---SGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 482 SYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLG-----YLDLRSN 536
             L L  N I               L  ++  +N I  + +    +L       L+L  N
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTE--KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189

Query: 537 LLQG--PLPVPPSSLRVLLISNNQFTGEIIHSI--CDIIALDVLDLSNNRLNGTIPECIG 592
            + G  P     +  + L     Q    I   +    I +L +    +       P    
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 593 NFSP-SLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDI 651
                S+  ++L+ +        TF   + L+ L+L    L   +P  LV  + ++ L +
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVL 308

Query: 652 GNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSG-YL 710
              K  +       N P L  L ++ N     +      E+   LR LDLS ++      
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGT-GCLENLENLRELDLSHDDIETSDC 367

Query: 711 PERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNG 770
               L NL+           L+ L                              + S N 
Sbjct: 368 CNLQLRNLS----------HLQSL------------------------------NLSYNE 387

Query: 771 FDGEISQVIGKLHSLRLLNLSHNHFTGQIP-SSLGNLAKLESLDLSSNNVAGKIPKPLTS 829
                ++   +   L LL+L+      +   S   NL  L+ L+LS + +     +    
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447

Query: 830 LTSLSVLNLSHNRLDGPIPHGP 851
           L +L  LNL  N          
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKT 469

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  138 bits (349), Expect = 4e-34
 Identities = 65/404 (16%), Positives = 123/404 (30%), Gaps = 59/404 (14%)

Query: 461 LSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKM 520
            +     ++  P  L        L+ S N +     +  S +    L++++L+   I  +
Sbjct: 17  YNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLIN--LTFLDLTRCQIYWI 72

Query: 521 KQ---IPWKNLGYLDLRSNLLQGPLP---VPPSSLRVLLISNNQFTGEIIHSICDIIALD 574
            +        L  L L +N L          P +L+ L       +      + +   L+
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 575 VLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLR--SLNLNNNEL 632
            L L +N ++          +  L VLD +NN ++       +        SLNLN N++
Sbjct: 133 SLYLGSNHISSIKLPKGFP-TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191

Query: 633 GGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGN--LPELQVLVLRSNKFHGSVREFEPK 690
            G I     +    + L+ G  +        L N  +  L +                  
Sbjct: 192 AG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 691 ESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGT 750
                +  ++L  + F       F                                    
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHC---------------------------------- 276

Query: 751 EIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLE 810
                   +    +D ++     E+   +  L +L+ L LS N F      S  N   L 
Sbjct: 277 -------FSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328

Query: 811 SLDLSSNNVAGKI-PKPLTSLTSLSVLNLSHNRLDGPIPHGPQF 853
            L +  N    ++    L +L +L  L+LSH+ ++       Q 
Sbjct: 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  132 bits (333), Expect = 4e-32
 Identities = 69/392 (17%), Positives = 127/392 (32%), Gaps = 45/392 (11%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSD 141
           ++              P        + ++++NL  + F     ++ F  F  L    L+ 
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT-FHCFSGLQELDLTA 287

Query: 142 SNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRL 201
           ++++ ++P  +  L              S+L  L LS    +    I+  + P+   + +
Sbjct: 288 THLS-ELPSGLVGL--------------STLKKLVLSANKFENLCQISASNFPSLTHLSI 332

Query: 202 SQNPSLAGKFPANNWTSP-IEYLDVSE---TSFSELPDSIGNLKLLGRLMLGYSQFVGPV 257
             N                +  LD+S     +       + NL  L  L L Y++ +   
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392

Query: 258 PASLGNLTQLTLLHLMHNNFSGHIP-SSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVS 315
             +     QL LL L           S   NL  L  L+LS +        +F  L  + 
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452

Query: 316 FFDLSNNQLAGPIPSHGSRLQNLVLIR---LNNNSFSGTIPSWLFSLPLLEYVRLSDNQL 372
             +L  N          + LQ L  +    L+    S        SL ++ +V LS N+L
Sbjct: 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512

Query: 373 SG-HIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGI---------- 421
           +   I+         + L++N +   +PS +  L     + L  N               
Sbjct: 513 TSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWY 572

Query: 422 ---------AEPYMFAKLIKLKYLYLSHNSLS 444
                     E  +      L+ + LS  +LS
Sbjct: 573 KENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 88.5 bits (220), Expect = 3e-18
 Identities = 42/263 (15%), Positives = 67/263 (25%), Gaps = 53/263 (20%)

Query: 600 VLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDA 659
             +  N  LN  IPGT    N    L  + N L      +      +  LD+   +I   
Sbjct: 16  TYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 660 FPYWLGNLPELQVLVLRSNKFHGSVREFEPKESF---PKLRILDLSINNFSGYLPERFLE 716
                 +   L  LVL +N           + +      L+ L       S  +    L 
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFM-----AETALSGPKALKHLFFIQTGISS-IDFIPLH 126

Query: 717 NLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEIS 776
           N             L  L                                 SN       
Sbjct: 127 NQK----------TLESL------------------------------YLGSNHISSIKL 146

Query: 777 QVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLS-SNNVAGKIPKPLTSLTSLSV 835
                   L++L+  +N         + +L +  +L L+ + N    I            
Sbjct: 147 PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS 206

Query: 836 LNLSHNRLDGPIPHGPQFNTFQE 858
           LN    +    I  G + +T Q 
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQS 229

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  231 bits (592), Expect = 4e-66
 Identities = 107/633 (16%), Positives = 183/633 (28%), Gaps = 116/633 (18%)

Query: 220 IEYLDVSETSFSELP-DSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFS 278
            + +D+S      L   S  N   L  L L   +       +   L  L+ L L  N   
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 279 GHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQLAG-PIPSHGSRLQ 336
              P S S L  L  L                 L  +   ++++N +    +P++ S L 
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153

Query: 337 NLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQG 396
           NLV + L+ N       + L  L                      +   ++ +S N +  
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLREN------------------PQVNLSLDMSLNPID- 194

Query: 397 SIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFP 456
            I    F+ + L +L L  N  S          L  L    L           +I  P  
Sbjct: 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254

Query: 457 KFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNF 516
                 ++                +    L+              +   ++S ++L+   
Sbjct: 255 MEGLCDVT----------------IDEFRLTYTNDFSDDIVKFHCLA--NVSAMSLAGVS 296

Query: 517 ITKMKQIPWK-NLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDV 575
           I  ++ +P       L +    L+    +    L+ L ++ N+ +  I      + +L  
Sbjct: 297 IKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSY 354

Query: 576 LDLSNNRLNGTIPECIGNFS-PSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGG 634
           LDLS N L+ +      +    SL  LDL  N     +   F     L+ L+  ++ L  
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKR 413

Query: 635 AIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESF- 693
               S                          +L +L  L +                 F 
Sbjct: 414 VTEFSA-----------------------FLSLEKLLYLDISYTNTKID-----FDGIFL 445

Query: 694 --PKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTE 751
               L  L ++ N+F          N   +                              
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLT----------------------------- 476

Query: 752 IEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLES 811
                       +D S    +     V   LH L+LLN+SHN+      S    L  L +
Sbjct: 477 -----------FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525

Query: 812 LDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLD 844
           LD S N +            SL+  NL++N + 
Sbjct: 526 LDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  218 bits (558), Expect = 2e-61
 Identities = 105/558 (18%), Positives = 191/558 (34%), Gaps = 69/558 (12%)

Query: 166 KNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDV 225
            ++ SS  ++ LS   L+     +  +    Q + LS+                IE ++ 
Sbjct: 28  DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE--------------IETIE- 72

Query: 226 SETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSL 285
                     +   L  L  L+L  +      P S   LT L  L  +    +      +
Sbjct: 73  --------DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPI 124

Query: 286 SNLVQLTYLDLSSNSFFG-EIPDIF-NLTQVSFFDLSNNQLAGPIPSHGSRLQNL----V 339
             L+ L  L+++ N     ++P  F NLT +   DLS N +     +    L+      +
Sbjct: 125 GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184

Query: 340 LIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQ---------NIYLS 390
            + ++ N     I    F    L  + L  N  S +I +   ++L            +  
Sbjct: 185 SLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243

Query: 391 NNRLQGSIPSSIFELVNLTDLQLD-SNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTF 449
              L+   PS +  L ++T  +   +       +   F  L  +  + L+  S+      
Sbjct: 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI---KYL 300

Query: 450 KIDSPFPKFSYLSLSACNISAFP----RFLRTQD----------------ELSYLDLSEN 489
           +      K+  LS+  C +  FP     FL++                   LSYLDLS N
Sbjct: 301 EDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN 360

Query: 490 KIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPW--KNLGYLDLRSNLLQGPLPVPP- 546
            +        S++G +SL +++LS N    M       + L +LD + + L+        
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420

Query: 547 ---SSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDL 603
                L  L IS      +       + +L+ L ++ N         +   + +L+ LDL
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480

Query: 604 RNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYW 663
              +L     G F   + L+ LN+++N L             +  LD    +I  +    
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540

Query: 664 LGNLPELQVLVLRSNKFH 681
                 L    L +N   
Sbjct: 541 QHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  207 bits (528), Expect = 3e-57
 Identities = 95/579 (16%), Positives = 174/579 (30%), Gaps = 51/579 (8%)

Query: 279 GHIPSSLSNLVQLTYLDLSSNSFFGEIP-DIFNLTQVSFFDLSNNQLAGPIPSHGSRLQN 337
           G +   +  +  +T           ++P DI + T+    DLS N L        S    
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDIPSSTKN--IDLSFNPLKILKSYSFSNFSE 57

Query: 338 LVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS--KSLQNIYLSNNRLQ 395
           L  + L+              L  L  + L+ N +        S   SL+N+     +L 
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 396 GSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS--LGNTFKIDS 453
                 I +L+ L  L +  N       P  F+ L  L ++ LS+N +     N  +   
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177

Query: 454 PFPK-FSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNL 512
             P+    L +S   I           +L  L L  N     I     +     L    L
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ-NLAGLHVHRL 236

Query: 513 SHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIA 572
                   + +       ++   ++          ++    ++      + I     +  
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDV----------TIDEFRLTYTNDFSDDIVKFHCLAN 286

Query: 573 LDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNEL 632
           +  + L+   +   + +           L +   +L            +L+SL L  N+ 
Sbjct: 287 VSAMSLAGVSIK-YLED--VPKHFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLTMNKG 340

Query: 633 GGAIPQSLVNCTKVEVLDIGNIKIN--DAFPYWLGNLPELQVLVLRSNKFHGSVREFEPK 690
             +I    V    +  LD+    ++      Y       L+ L L  N        F   
Sbjct: 341 --SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFM-- 396

Query: 691 ESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGT 750
               +L+ LD   +            +L  +  +       +   +  +           
Sbjct: 397 -GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG--------- 446

Query: 751 EIEMQKILTVFTTIDFSSNGFDGEI-SQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKL 809
                  LT   T+  + N F     S V     +L  L+LS              L +L
Sbjct: 447 -------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499

Query: 810 ESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIP 848
           + L++S NN+          L SLS L+ S NR++    
Sbjct: 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  167 bits (426), Expect = 6e-44
 Identities = 100/547 (18%), Positives = 174/547 (31%), Gaps = 108/547 (19%)

Query: 317 FDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSG-H 375
           +   + +L+  +P       +   I L+ N           +   L+++ LS  ++    
Sbjct: 16  YQCMDQKLSK-VPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 376 IDEFPS-KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLK 434
              +     L N+ L+ N +Q   P S   L +L +L       + + E +   +LI LK
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL-ESFPIGQLITLK 131

Query: 435 YLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQ 494
            L ++HN +    + K+ + F   +                     L ++DLS N I   
Sbjct: 132 KLNVAHNFIH---SCKLPAYFSNLT--------------------NLVHVDLSYNYIQTI 168

Query: 495 IPSWISEIG--KDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVL 552
             + +  +         +++S N I               ++    QG        L  L
Sbjct: 169 TVNDLQFLRENPQVNLSLDMSLNPIDF-------------IQDQAFQGI------KLHEL 209

Query: 553 LISNNQFTGEIIHSIC-DIIALDVLDLSNNRLNGTIPECI-------GNFSPSLSVLDLR 604
            +  N  +  I+ +   ++  L V  L            I       G    ++    L 
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

Query: 605 NNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWL 664
                      F     + +++L    +     + +    K + L I   ++   FP   
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQ-FP--T 324

Query: 665 GNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNV 724
            +LP L+ L L  NK   S      K + P L  LDLS N  S +       +L      
Sbjct: 325 LDLPFLKSLTLTMNKGSIS----FKKVALPSLSYLDLSRNALS-FSGCCSYSDLGTN--- 376

Query: 725 SADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHS 784
                 LR+L                              D S NG    +S     L  
Sbjct: 377 -----SLRHL------------------------------DLSFNGA-IIMSANFMGLEE 400

Query: 785 LRLLNLSHNHFTGQIP-SSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRL 843
           L+ L+  H+        S+  +L KL  LD+S  N           LTSL+ L ++ N  
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 844 DGPIPHG 850
                  
Sbjct: 461 KDNTLSN 467

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  145 bits (367), Expect = 2e-36
 Identities = 94/500 (18%), Positives = 134/500 (26%), Gaps = 109/500 (21%)

Query: 365 VRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEP 424
            +  D +LS   D+ PS S +NI LS N L+     S      L  L L       I E 
Sbjct: 16  YQCMDQKLSKVPDDIPS-STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI-ED 73

Query: 425 YMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYL 484
             +  L  L  L L+ N +                  S S       P        L  L
Sbjct: 74  KAWHGLHHLSNLILTGNPIQ-----------------SFS-------PGSFSGLTSLENL 109

Query: 485 DLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIP----WKNLGYLDLRSNLLQG 540
              E K+       I ++   +L  +N++HNFI   K         NL ++DL  N +Q 
Sbjct: 110 VAVETKLASLESFPIGQLI--TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167

Query: 541 -------PLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGN 593
                   L   P     L +S N     I       I L  L L  N  +  I +    
Sbjct: 168 ITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ 226

Query: 594 FSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGN 653
               L V  L              E + +  L                    ++   +  
Sbjct: 227 NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT----------------IDEFRLTY 270

Query: 654 IKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPER 713
                        L  +  + L         +  E      K + L +         P  
Sbjct: 271 TNDFSDDIVKFHCLANVSAMSLAGVSI----KYLEDVPKHFKWQSLSIIRCQLKQ-FPTL 325

Query: 714 FLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDG 773
            L  L                                            ++  + N   G
Sbjct: 326 DLPFL-------------------------------------------KSLTLTMN--KG 340

Query: 774 EISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLA--KLESLDLSSNNVAGKIPKPLTSLT 831
            IS     L SL  L+LS N  +     S  +L    L  LDLS N     +      L 
Sbjct: 341 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLE 399

Query: 832 SLSVLNLSHNRLDGPIPHGP 851
            L  L+  H+ L        
Sbjct: 400 ELQHLDFQHSTLKRVTEFSA 419

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  112 bits (281), Expect = 9e-26
 Identities = 52/336 (15%), Positives = 100/336 (29%), Gaps = 55/336 (16%)

Query: 531 LDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPEC 590
                  L       PSS + + +S N       +S  +   L  LDLS   +     + 
Sbjct: 16  YQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA 75

Query: 591 IGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLD 650
                  LS L L  N +    PG+F+    L +L     +L       +     ++ L+
Sbjct: 76  WHGL-HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134

Query: 651 IGNIKINDA-FPYWLGNLPELQVLVLRSNKFHG-SVREFEP-KESFPKLRILDLSINNFS 707
           + +  I+    P +  NL  L  + L  N     +V + +  +E+      LD+S+N   
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194

Query: 708 GYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFS 767
            ++ ++  + +                                             +   
Sbjct: 195 -FIQDQAFQGIK-----------------------------------------LHELTLR 212

Query: 768 SNGFDGEI-SQVIGKLHSLRLLNLSHNHFTGQI------PSSLGNLAKL--ESLDLSSNN 818
            N     I    +  L  L +  L    F  +       PS +  L  +  +   L+  N
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272

Query: 819 VAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFN 854
                      L ++S ++L+   +         F 
Sbjct: 273 DFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK 308

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 762 TTIDFSSNGFDGEISQVIGKL-HSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVA 820
            T           +S+V   +  S + ++LS N        S  N ++L+ LDLS   + 
Sbjct: 14  ITYQCMDQK----LSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE 69

Query: 821 GKIPKPLTSLTSLSVLNLSHNRLDGPIPH 849
               K    L  LS L L+ N +    P 
Sbjct: 70  TIEDKAWHGLHHLSNLILTGNPIQSFSPG 98

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  235 bits (601), Expect = 2e-65
 Identities = 84/628 (13%), Positives = 177/628 (28%), Gaps = 90/628 (14%)

Query: 34  ALIQFKQLFSFDEDS-SFVCQRSYPKMISWKKDTNCCSWDGVTCDM--ATGNVISLDLSC 90
           AL    +               +    ++W  +     W           G V  L L+ 
Sbjct: 273 ALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAG 332

Query: 91  SWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPY 150
               G +P   ++  L  L+ L+   +    S    G                I      
Sbjct: 333 FGAKGRVPD--AIGQLTELKVLSFGTHSETVSGRLFGDEEL-TPDMSEERKHRIRMHYKK 389

Query: 151 EISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGK 210
                     + D L++  +    +       + +           +   ++       +
Sbjct: 390 MFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR---ITFISKAIQR 446

Query: 211 FPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLL 270
                    ++ +  + + F+    ++            Y++       S  NL  LT +
Sbjct: 447 LTK------LQIIYFANSPFTYDNIAVDWEDAN----SDYAKQYENEELSWSNLKDLTDV 496

Query: 271 HLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPS 330
            L +      +P  L +L +L  L+++ N          + T+              +  
Sbjct: 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR--------------LAD 542

Query: 331 HGSRLQNLVLIRLNNNSFSGTIPSWLFS-LPLLEYVRLSDNQLSGHIDEFPS-KSLQNIY 388
                  + +  +  N+      S     +  L  +    N++  H++ F +   L ++ 
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLK 601

Query: 389 LSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGN 447
           L  N+++  IP         +  L    N    I   +    +  +  +  S+N +    
Sbjct: 602 LDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG-SE 659

Query: 448 TFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSL 507
              I      +  ++                   S + LS N+I        +      +
Sbjct: 660 GRNISCSMDDYKGIN------------------ASTVTLSYNEIQKFPTELFATGS--PI 699

Query: 508 SYVNLSHNFIT-----KMKQIP-----WKNLGYLDLRSNLLQGPLPVPPS-------SLR 550
           S + LS+N +T      +K           L  +DLR N L     +           L 
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS---LSDDFRATTLPYLS 756

Query: 551 VLLISNNQFTGEIIHSICDIIALDVLDL------SNNRLNGTIPECIGNFSPSLSVLDLR 604
            + +S N F+        +   L    +        NR+    P  I    PSL  L + 
Sbjct: 757 NMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC-PSLIQLQIG 814

Query: 605 NNRLNGSIPGTFAESNWLRSLNLNNNEL 632
           +N +   +         L  L++ +N  
Sbjct: 815 SNDIR-KVDEKLTPQ--LYILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  221 bits (565), Expect = 9e-61
 Identities = 89/624 (14%), Positives = 183/624 (29%), Gaps = 103/624 (16%)

Query: 274 HNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHG 332
            + +       L N  ++T L L+     G +PD I  LT++       +         G
Sbjct: 308 LDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFG 367

Query: 333 SRLQNLVLIRLNNNSFSGTIPS-WLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSN 391
                  +     +         +L     L    L  + ++ + +  P K    I L +
Sbjct: 368 DEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKD 427

Query: 392 NRLQG------SIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSL 445
            ++         I  +I  L  L  +   ++ F+       +            +  LS 
Sbjct: 428 TQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487

Query: 446 GNTFKIDSPFPKFSYLSLSACN-ISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGK 504
            N           + + L  C  ++  P FL    EL  L+++ N+         ++  +
Sbjct: 488 SN-------LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS-AAQLKADWTR 539

Query: 505 DSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPP-----SSLRVLLISNNQF 559
            +                     +    +  N L+   P          L +L   +N+ 
Sbjct: 540 LADDEDTGP-------------KIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKV 585

Query: 560 TGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAES 619
               + +    + L  L L  N++   IPE    F+  +  L   +N+L   IP  F   
Sbjct: 586 R--HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAK 641

Query: 620 N--WLRSLNLNNNELGGAIPQ-----SLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQV 672
           +   + S++ + N++G                    + +   +I             +  
Sbjct: 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701

Query: 673 LVLRSNKF---HGSVREFEPKE--SFPKLRILDLSINNFSGYLPERFLENLNAMRNVSAD 727
           ++L +N       +  + +     +   L  +DL  N  +  L + F             
Sbjct: 702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRA----------- 749

Query: 728 EGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRL 787
              L YL                           + +D S N F             L+ 
Sbjct: 750 -TTLPYL---------------------------SNMDVSYNCFS-SFPTQPLNSSQLKA 780

Query: 788 LNLSH------NHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHN 841
             + H      N    Q P+ +     L  L + SN++  K+ + L     L +L+++ N
Sbjct: 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADN 837

Query: 842 RL-DGPIPHGPQFNTFQEDSYIGN 864
                 +     +        + +
Sbjct: 838 PNISIDVTSVCPYIEAGMYVLLYD 861

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  212 bits (542), Expect = 9e-58
 Identities = 90/670 (13%), Positives = 184/670 (27%), Gaps = 145/670 (21%)

Query: 167 NLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVS 226
           + +  +T LSL+    +G  P  I  L   +++    +          +     +  +  
Sbjct: 320 DNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 227 ETS--------FSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFS 278
           +          F +    +    LL   +    +       S  +L    + +L   N  
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL--TNRI 437

Query: 279 GHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNL 338
             I  ++  L +L  +  +++ F  +   +         +    +         S L++L
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA----NSDYAKQYENEELSWSNLKDL 493

Query: 339 VLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSI 398
             + L N      +P +L+ LP L+ + ++ N+           +              +
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT-------------RL 540

Query: 399 PSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKF 458
                    +    +  NN           K++KL  L   HN +     F       K 
Sbjct: 541 ADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAF---GTNVKL 597

Query: 459 SYLSLSACNISAFPR-FLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFI 517
           + L L    I   P  F    D++  L  S NK+   IP+  +      +  V+ S+N I
Sbjct: 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKI 656

Query: 518 TKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLD 577
                             N+          +   + +S N+              +  + 
Sbjct: 657 GS-------------EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703

Query: 578 LSNNRL-------NGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNW--LRSLNLN 628
           LSNN +                N +  L+ +DLR N+L  S+   F  +    L +++++
Sbjct: 704 LSNNLMTSIPENSLKPKDGNYKN-TYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVS 761

Query: 629 NNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFE 688
            N                            +FP    N  +L+   +R            
Sbjct: 762 YNCF-------------------------SSFPTQPLNSSQLKAFGIRHQ---------- 786

Query: 689 PKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLK 748
                      D   N      P                      L              
Sbjct: 787 ----------RDAEGNRILRQWPTGI--------------TTCPSL-------------- 808

Query: 749 GTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAK 808
                          +   SN    ++ + +     L +L+++ N       +S+    +
Sbjct: 809 -------------IQLQIGSNDI-RKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIE 852

Query: 809 LESLDLSSNN 818
                L  + 
Sbjct: 853 AGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  167 bits (425), Expect = 6e-43
 Identities = 81/500 (16%), Positives = 156/500 (31%), Gaps = 78/500 (15%)

Query: 373 SGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIK 432
           SG I+        N     +         +     +T L L      G   P    +L +
Sbjct: 290 SGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGR-VPDAIGQLTE 348

Query: 433 LKYLYLSHNSLS-LGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKI 491
           LK L    +S +  G  F  +   P  S        +     FL     L+  DL ++ I
Sbjct: 349 LKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI 408

Query: 492 DGQIPSWISEIGK-DSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPS--- 547
                +   E+      S ++L                  +   +N +     +  +   
Sbjct: 409 -----NRNPEMKPIKKDSRISLKDT--------------QIGNLTNRITF---ISKAIQR 446

Query: 548 --SLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRN 605
              L+++  +N+ FT + I      +  +  +    +          N    L+ ++L N
Sbjct: 447 LTKLQIIYFANSPFTYDNIA-----VDWEDANSDYAKQYENEELSWSNLK-DLTDVELYN 500

Query: 606 NRLNGSIPGTFAESNWLRSLNLNNNELGG---------AIPQSLVNCTKVEVLDIGNIKI 656
                 +P    +   L+SLN+  N              +        K+++  +G   +
Sbjct: 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560

Query: 657 ND-AFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFL 715
            +      L  + +L +L    NK    +  F    +  KL  L L  N     +PE F 
Sbjct: 561 EEFPASASLQKMVKLGLLDCVHNKVR-HLEAFG---TNVKLTDLKLDYNQIEE-IPEDFC 615

Query: 716 ENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEI 775
              + +  +     KL+Y+   +   S               + V  ++DFS N    E 
Sbjct: 616 AFTDQVEGLGFSHNKLKYIPNIFNAKS---------------VYVMGSVDFSYNKIGSEG 660

Query: 776 SQV-----IGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSN-------NVAGKI 823
             +       K  +   + LS+N             + + ++ LS+N       N     
Sbjct: 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720

Query: 824 PKPLTSLTSLSVLNLSHNRL 843
                +   L+ ++L  N+L
Sbjct: 721 DGNYKNTYLLTTIDLRFNKL 740

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  135 bits (342), Expect = 8e-33
 Identities = 59/383 (15%), Positives = 122/383 (31%), Gaps = 51/383 (13%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDF--------DYSEISSGFSRFRN 133
           ++  ++L        +P    L+ L  LQ+LN++ N          D++ ++        
Sbjct: 492 DLTDVELYNCPNMTQLPD--FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 134 LTHFSLSDSNINCKIPYEISFLKMST-----------VVLDSLKNLSSSLTSLSLSDCIL 182
           +  F +  +N+  + P   S  KM               L++       LT L L    +
Sbjct: 550 IQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVK-LTDLKLDYNQI 607

Query: 183 QGNFPINIF-HLPNPQMIRLSQNP--SLAGKFPANNWTSPIEYLDVSETSFSELPDSIG- 238
           +   P +        + +  S N    +   F A +    +  +D S         +I  
Sbjct: 608 E-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV-MGSVDFSYNKIGSEGRNISC 665

Query: 239 -----NLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFS-------GHIPSSLS 286
                       + L Y++            + ++ + L +N  +            +  
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725

Query: 287 NLVQLTYLDLSSNSFFGEIPDIF--NLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRL- 343
           N   LT +DL  N       D     L  +S  D+S N  +   P+       L    + 
Sbjct: 726 NTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIR 784

Query: 344 -----NNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSI 398
                  N      P+ + + P L  +++  N +   +DE  +  L  + +++N      
Sbjct: 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTPQLYILDIADNPNISID 843

Query: 399 PSSIFELVNLTDLQLDSNNFSGI 421
            +S+   +      L  +    I
Sbjct: 844 VTSVCPYIEAGMYVLLYDKTQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 99.2 bits (247), Expect = 2e-21
 Identities = 53/287 (18%), Positives = 92/287 (32%), Gaps = 38/287 (13%)

Query: 599 SVLDLRNNRLNGSIP-GTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKIN 657
             LD +N R        T    NW  + N   +  G      L N  +V  L +      
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLNW--NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAK 336

Query: 658 DAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLEN 717
              P  +G L EL+VL   ++    S R F  +E  P +   +   +    +  + FL+ 
Sbjct: 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDM--SEERKHRIRMHYKKMFLDY 394

Query: 718 LNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQ 777
              +      +  +    E                +  +I    T I   +N     IS+
Sbjct: 395 DQRLNLSDLLQDAINRNPE-----------MKPIKKDSRISLKDTQIGNLTNRI-TFISK 442

Query: 778 VIGKLHSLRLLNLSHNHFTG-------------------QIPSSLGNLAKLESLDLSSNN 818
            I +L  L+++  +++ FT                        S  NL  L  ++L +  
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP 502

Query: 819 VAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNL 865
              ++P  L  L  L  LN++ NR          +    +D      
Sbjct: 503 NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD--EDTG 547

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  211 bits (540), Expect = 5e-62
 Identities = 82/324 (25%), Positives = 124/324 (38%), Gaps = 54/324 (16%)

Query: 555 SNNQFTGEIIHSICDIIALDVLDLSNNRLNGT--IPECIGNFSPSLSVLDLRN-NRLNGS 611
            N  + G +  +      ++ LDLS   L     IP  + N    L+ L +   N L G 
Sbjct: 34  CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGP 92

Query: 612 IPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQ 671
           IP   A+   L  L + +  + GAIP  L     +  LD     ++   P  + +LP L 
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152

Query: 672 VLVLRSNKFHGSVREFEPKE--SFPKL-RILDLSINNFSGYLPERFLENLNAMRNVSADE 728
            +    N+  G++    P    SF KL   + +S N  +G +P     NLN         
Sbjct: 153 GITFDGNRISGAI----PDSYGSFSKLFTSMTISRNRLTGKIPP-TFANLN--------- 198

Query: 729 GKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLL 788
                                              +D S N  +G+ S + G   + + +
Sbjct: 199 --------------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 789 NLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIP 848
           +L+ N     +   +G    L  LDL +N + G +P+ LT L  L  LN+S N L G IP
Sbjct: 227 HLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 849 HGPQFNTFQEDSYIGNLGLCGFPL 872
            G     F   +Y  N  LCG PL
Sbjct: 286 QGGNLQRFDVSAYANNKCLCGSPL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  190 bits (485), Expect = 2e-54
 Identities = 82/305 (26%), Positives = 135/305 (44%), Gaps = 44/305 (14%)

Query: 252 QFVGPVPASLGNLTQLTLLHLMHNNFSG--HIPSSLSNLVQLTYLDLSS-NSFFGEIPD- 307
            ++G +  +     ++  L L   N      IPSSL+NL  L +L +   N+  G IP  
Sbjct: 37  TWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA 96

Query: 308 IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRL 367
           I  LTQ+ +  +++  ++G IP   S+++ LV +  + N+ SGT+P  + SLP L  +  
Sbjct: 97  IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156

Query: 368 SDNQLSGHI-DEF--PSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEP 424
             N++SG I D +   SK   ++ +S NRL G IP +   L NL  + L  N   G A  
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDA-S 214

Query: 425 YMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYL 484
            +F      + ++L+ NSL+            K                       L+ L
Sbjct: 215 VLFGSDKNTQKIHLAKNSLA--------FDLGKVGLSK-----------------NLNGL 249

Query: 485 DLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIP----WKNLGYLDLRSN--LL 538
           DL  N+I G +P  ++++    L  +N+S N +    +IP     +        +N  L 
Sbjct: 250 DLRNNRIYGTLPQGLTQL--KFLHSLNVSFNNLC--GEIPQGGNLQRFDVSAYANNKCLC 305

Query: 539 QGPLP 543
             PLP
Sbjct: 306 GSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  188 bits (481), Expect = 8e-54
 Identities = 78/349 (22%), Positives = 137/349 (39%), Gaps = 55/349 (15%)

Query: 27  CPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKDTNCC--SWDGVTCDMAT--GN 82
           C  +   AL+Q K+       ++           SW   T+CC  +W GV CD  T    
Sbjct: 3   CNPQDKQALLQIKK--DLGNPTTLS---------SWLPTTDCCNRTWLGVLCDTDTQTYR 51

Query: 83  VISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDS 142
           V +LDLS   L    P  +SL +L +L  L +   +     I    ++   L +  ++ +
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 143 NINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLS 202
           N++  IP  +S +               +L +L  S   L G  P +I  LPN   I   
Sbjct: 112 NVSGAIPDFLSQI--------------KTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157

Query: 203 QNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNL-KLLGRLMLGYSQFVGPVPASL 261
            N  ++G                       +PDS G+  KL   + +  ++  G +P + 
Sbjct: 158 GN-RISG----------------------AIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194

Query: 262 GNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSN 321
            NL  L  + L  N   G       +      + L+ NS   ++  +     ++  DL N
Sbjct: 195 ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN 253

Query: 322 NQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDN 370
           N++ G +P   ++L+ L  + ++ N+  G IP    +L   +    ++N
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  160 bits (406), Expect = 1e-43
 Identities = 66/303 (21%), Positives = 111/303 (36%), Gaps = 60/303 (19%)

Query: 526 KNLGYLDLRSNLLQGPLPVPPS-----SLRVLLISN-NQFTGEIIHSICDIIALDVLDLS 579
             +  LDL    L  P P+P S      L  L I   N   G I  +I  +  L  L ++
Sbjct: 50  YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109

Query: 580 NNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQS 639
           +  ++G IP+ +     +L  LD   N L+G++P + +    L  +  + N + GAIP S
Sbjct: 110 HTNVSGAIPDFLSQIK-TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 640 LVNCTK-VEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKE--SFPKL 696
             + +K    + I   ++    P    NL  L  + L  N   G           S    
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDA----SVLFGSDKNT 223

Query: 697 RILDLSINNFSGYLPE-RFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQ 755
           + + L+ N+ +  L +    +NL                                     
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNL------------------------------------- 246

Query: 756 KILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLS 815
                   +D  +N   G + Q + +L  L  LN+S N+  G+IP   GNL + +    +
Sbjct: 247 ------NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYA 299

Query: 816 SNN 818
           +N 
Sbjct: 300 NNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  150 bits (382), Expect = 2e-40
 Identities = 72/340 (21%), Positives = 122/340 (35%), Gaps = 79/340 (23%)

Query: 386 NIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAE-PYMFAKLIKLKYLYLSH-NSL 443
                N    G +  +  +   + +L L   N       P   A L  L +LY+   N+L
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 444 SLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIG 503
                     P P     +++               +L YL ++   + G IP ++S+I 
Sbjct: 90  V--------GPIPP----AIAKLT------------QLHYLYITHTNVSGAIPDFLSQI- 124

Query: 504 KDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEI 563
                                 K L  LD                      S N  +G +
Sbjct: 125 ----------------------KTLVTLDF---------------------SYNALSGTL 141

Query: 564 IHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLR 623
             SI  +  L  +    NR++G IP+  G+FS   + + +  NRL G IP TFA  N L 
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA 200

Query: 624 SLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGS 683
            ++L+ N L G       +    + + +    +       +G    L  L LR+N+ +G+
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGT 259

Query: 684 VREFEPKE--SFPKLRILDLSINNFSGYLPER-FLENLNA 720
           +    P+       L  L++S NN  G +P+   L+  + 
Sbjct: 260 L----PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDV 295

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  122 bits (309), Expect = 9e-31
 Identities = 56/236 (23%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 619 SNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKIN--DAFPYWLGNLPELQVLVLR 676
           S+WL + +  N    G +  +     +V  LD+  + +      P  L NLP L  L + 
Sbjct: 25  SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG 84

Query: 677 S-NKFHGSVREFEPKE--SFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRY 733
             N   G +    P       +L  L ++  N SG +P+                 +++ 
Sbjct: 85  GINNLVGPI----PPAIAKLTQLHYLYITHTNVSGAIPDFL--------------SQIKT 126

Query: 734 LGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHN 793
           L                            T+DFS N   G +   I  L +L  +    N
Sbjct: 127 L---------------------------VTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Query: 794 HFTGQIPSSLGNLAKL-ESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIP 848
             +G IP S G+ +KL  S+ +S N + GKIP    +L +L+ ++LS N L+G   
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDAS 214

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 78.0 bits (193), Expect = 1e-15
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 3/91 (3%)

Query: 762 TTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQ--IPSSLGNLAKLESLDLSS-NN 818
            T D  +  + G +     + + +  L+LS  +      IPSSL NL  L  L +   NN
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 819 VAGKIPKPLTSLTSLSVLNLSHNRLDGPIPH 849
           + G IP  +  LT L  L ++H  + G IP 
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 43.7 bits (104), Expect = 2e-04
 Identities = 17/90 (18%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSD 141
           N   + L+ + L  ++     +    +L  L+L +N   Y  +  G ++ + L   ++S 
Sbjct: 222 NTQKIHLAKNSLAFDLG---KVGLSKNLNGLDLRNNRI-YGTLPQGLTQLKFLHSLNVSF 277

Query: 142 SNINCKIPYEISFLKMSTVVLDSLKNLSSS 171
           +N+  +IP   +  +       + K L  S
Sbjct: 278 NNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  191 bits (487), Expect = 4e-52
 Identities = 94/511 (18%), Positives = 171/511 (33%), Gaps = 32/511 (6%)

Query: 220 IEYLDVSETSFSELP-DSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFS 278
            + LD+S      L   S  +   L  L L   +       +  +L+ L+ L L  N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 279 GHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQLA-GPIPSHGSRLQ 336
                + S L  L  L     +          +L  +   ++++N +    +P + S L 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 337 NLVLIRLNNNSFSGTIPSWLFSLPLLEYVR----LSDNQLSG-HIDEFPSKSLQNIYLSN 391
           NL  + L++N       + L  L  +  +     LS N ++      F    L  + L N
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209

Query: 392 NRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIA-----EPYMFAKLIKL--KYLYLSHNSL 443
           N    ++  +  + L  L   +L    F         +      L  L  +   L++   
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 444 SLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIG 503
            L +   + +     S  SL +  I     F        +L+L   K           + 
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-----QFPTLK 323

Query: 504 KDSLSYVNLSHNFITKM-KQIPWKNLGYLDLRSNLLQGPLPVPPS-----SLRVLLISNN 557
             SL  +  + N       ++   +L +LDL  N L        S     SL+ L +S N
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 558 QFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFA 617
                +  +   +  L+ LD  ++ L       +     +L  LD+ +     +  G F 
Sbjct: 384 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442

Query: 618 ESNWLRSLNLNNNELGGAIPQ-SLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLR 676
             + L  L +  N                +  LD+   ++    P    +L  LQVL + 
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502

Query: 677 SNKFHGSVREFEPKESFPKLRILDLSINNFS 707
           SN+   SV +    +    L+ + L  N + 
Sbjct: 503 SNQLK-SVPD-GIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  166 bits (423), Expect = 8e-44
 Identities = 100/557 (17%), Positives = 163/557 (29%), Gaps = 71/557 (12%)

Query: 295 DLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPS 354
                +F+    ++   T+    DLS N L             L ++ L+          
Sbjct: 13  QCMELNFYKIPDNLPFSTKN--LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 355 WLFSLPLLEYVRLSDNQLSGHIDEF--PSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQ 412
              SL  L  + L+ N +            SLQ +      L       I  L  L +L 
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 413 LDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPF---PKFSYLSLSACNIS 469
           +  N       P  F+ L  L++L LS N +       +            L LS   ++
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 470 AFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLG 529
                   +  L  L L  N     +     + G   L    L          +   +  
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ-GLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 530 YLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPE 589
            L+   NL         +     L   + +  +II     +  +    L +  +      
Sbjct: 250 ALEGLCNL---------TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD- 299

Query: 590 CIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVL 649
              +++     L+L N +     P    +S  L+ L   +N+ G A   S V+   +E L
Sbjct: 300 --FSYNFGWQHLELVNCKFG-QFPTLKLKS--LKRLTFTSNKGGNAF--SEVDLPSLEFL 352

Query: 650 DIGNIKIN--DAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFS 707
           D+    ++              L+ L L  N        F       +L  LD   +N  
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL---GLEQLEHLDFQHSNLK 409

Query: 708 GYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFS 767
                    +L            L YL                              D S
Sbjct: 410 QMSEFSVFLSLR----------NLIYL------------------------------DIS 429

Query: 768 SNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPS-SLGNLAKLESLDLSSNNVAGKIPKP 826
                   + +   L SL +L ++ N F           L  L  LDLS   +    P  
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

Query: 827 LTSLTSLSVLNLSHNRL 843
             SL+SL VLN++ N+L
Sbjct: 490 FNSLSSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  160 bits (406), Expect = 1e-41
 Identities = 108/543 (19%), Positives = 186/543 (34%), Gaps = 51/543 (9%)

Query: 108 HLQTLNLSHNDFDYSEISSG-FSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLK 166
             + L+LS N      + S  F  F  L    LS   I   I               SL 
Sbjct: 29  STKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDG---------AYQSLS 76

Query: 167 NLSSSLTSLSLSDCILQGNFPINIF-HLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDV 225
           +L    ++L L+   +Q +  +  F  L + Q +   +    + +         ++ L+V
Sbjct: 77  HL----STLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 226 SETSFSEL--PDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHL---MHNNFSGH 280
           +         P+   NL  L  L L  ++        L  L Q+ LL+L   +  N    
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 281 IPSSLSNLVQLTYLDLSSNSFFGEIPD--IFNLTQVSFFDL------SNNQLAGPIPSHG 332
           I       ++L  L L +N     +    I  L  +    L      +   L     S  
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 333 SRLQNLVLIRLN---NNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYL 389
             L NL +        + +   I      L  +    L    +    D   +   Q++ L
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL 311

Query: 390 SNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS-LGNT 448
            N +     P+   +L +L  L   SN        +    L  L++L LS N LS  G  
Sbjct: 312 VNCKFG-QFPT--LKLKSLKRLTFTSNKGGNA---FSEVDLPSLEFLDLSRNGLSFKGCC 365

Query: 449 FKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLS 508
            + D       YL LS   +          ++L +LD   + +  Q+  +   +   +L 
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLI 424

Query: 509 YVNLSHNFITKMKQIPWKNLG---YLDLRSNLLQGPLP----VPPSSLRVLLISNNQFTG 561
           Y+++SH          +  L     L +  N  Q            +L  L +S  Q   
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

Query: 562 EIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNW 621
               +   + +L VL++++N+L  ++P+ I +   SL  + L  N  + S P     S W
Sbjct: 485 LSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 543

Query: 622 LRS 624
           L  
Sbjct: 544 LNK 546

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  136 bits (345), Expect = 9e-34
 Identities = 85/442 (19%), Positives = 145/442 (32%), Gaps = 48/442 (10%)

Query: 85  SLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNI 144
            L    + L  ++     + HL  L+ LN++HN     ++   FS   NL H  LS + I
Sbjct: 104 KLVAVETNLA-SLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 145 NCKIPYEISFLKMSTVVLDSLKNLSS--------------SLTSLSLSDCILQGNFPINI 190
                 ++  L    ++  SL +LS                L  L+L +     N     
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSL-DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC 220

Query: 191 FH-LPNPQMIRLSQN--------PSLAGKFPANNWTSPIEYLDVS--ETSFSELPDSIGN 239
              L   ++ RL                          IE   ++  +    ++ D    
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280

Query: 240 LKLLGRLMLGYSQFVGPVPAS-LGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSS 298
           L  +    L           S       L L++     F          L  L  L  +S
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL------KLKSLKRLTFTS 334

Query: 299 NSFFGEIPDIFNLTQVSFFDLSNNQLA--GPIPSHGSRLQNLVLIRLNNNSFSGTIPSWL 356
           N   G      +L  + F DLS N L+  G          +L  + L+ N    T+ S  
Sbjct: 335 NK-GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNF 392

Query: 357 FSLPLLEYVRLSDNQLSGHIDEFPSKSLQNI---YLSNNRLQGSIPSSIFELVNLTDLQL 413
             L  LE++    + L    +     SL+N+    +S+   + +       L +L  L++
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 414 DSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS--LGNTFKIDSPFPKFSYLSLSACNISAF 471
             N+F     P +F +L  L +L LS   L       F   +       L++++  + + 
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF---NSLSSLQVLNMASNQLKSV 509

Query: 472 PR-FLRTQDELSYLDLSENKID 492
           P         L  + L  N  D
Sbjct: 510 PDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  135 bits (343), Expect = 1e-33
 Identities = 91/501 (18%), Positives = 149/501 (29%), Gaps = 63/501 (12%)

Query: 365 VRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEP 424
            +  +       D  P  S +N+ LS N L+     S F    L  L L       I E 
Sbjct: 12  YQCMELNFYKIPDNLPF-STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-ED 69

Query: 425 YMFAKLIKLKYLYLSHNSLSL--GNTFKIDSPFPKFSYLSLSACNISAFP-RFLRTQDEL 481
             +  L  L  L L+ N +       F   S       L     N+++     +     L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAF---SGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 482 SYLDLSENKI-DGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQG 540
             L+++ N I   ++P + S +   +L +++LS N I  +     + L  +         
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLT--NLEHLDLSSNKIQSIYCTDLRVLHQM--------- 175

Query: 541 PLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSV 600
                P     L +S N     I       I L  L L NN  +  + +        L V
Sbjct: 176 -----PLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 601 LDL------RNNRLNGSIPGTFAESNWLRSLNLNNNEL---GGAIPQSLVNCTKVEVLDI 651
             L          L             L         L      I       T V    +
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 652 GNIKINDAFPY-WLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYL 710
            ++ I     + +      L+++  +  +F        P      L+ L  + N      
Sbjct: 290 VSVTIERVKDFSYNFGWQHLELVNCKFGQF--------PTLKLKSLKRLTFTSNKGGNAF 341

Query: 711 PERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNG 770
            E  L +L              +L          ++ KG   +     T    +D S NG
Sbjct: 342 SEVDLPSL-------------EFLDLSRNG----LSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 771 FDGEISQVIGKLHSLRLLNLSHNHFTGQIPSS-LGNLAKLESLDLSSNNVAGKIPKPLTS 829
               +S     L  L  L+  H++       S   +L  L  LD+S  +           
Sbjct: 385 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 830 LTSLSVLNLSHNRLDGPIPHG 850
           L+SL VL ++ N         
Sbjct: 444 LSSLEVLKMAGNSFQENFLPD 464

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 87.1 bits (216), Expect = 8e-18
 Identities = 56/309 (18%), Positives = 98/309 (31%), Gaps = 28/309 (9%)

Query: 573 LDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNEL 632
              LDLS N L         +F P L VLDL    +     G +   + L +L L  N +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 633 GGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKES 692
                 +    + ++ L      +     + +G+L  L+ L +  N    S +  E   +
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSN 147

Query: 693 FPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEI 752
              L  LDLS N     +    L  L+ M  +      L      + Q      ++    
Sbjct: 148 LTNLEHLDLSSNKIQ-SIYCTDLRVLHQMP-LLNLSLDLSLNPMNFIQPGAFKEIR---- 201

Query: 753 EMQKILTVFTTIDFSSNGFDGEISQ-VIGKLHSLRLLNLSHNHFTGQ---IPSSLGNLAK 808
                      +   +N     + +  I  L  L +  L    F  +          L  
Sbjct: 202 --------LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

Query: 809 LESLDLSSNNVAG------KIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYI 862
           L +L +    +A        I      LT++S  +L    ++  +     +N   +   +
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFS-YNFGWQHLEL 311

Query: 863 GNLGLCGFP 871
            N     FP
Sbjct: 312 VNCKFGQFP 320

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  178 bits (454), Expect = 2e-46
 Identities = 109/611 (17%), Positives = 203/611 (33%), Gaps = 98/611 (16%)

Query: 269 LLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQLAGP 327
           +      N +  +P  L+       L LS N         F  L Q+   +L +      
Sbjct: 8   IAFYRFCNLT-QVPQVLNTT---ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 328 IPSHG-SRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF----PSK 382
           I       L NL ++ L ++      P     L  L  +RL    LS  + +       K
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123

Query: 383 SLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAKL--IKLKYLYLS 439
           +L  + LS N+++       F  L +L  +   SN    +   +    L    L +  L+
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV-CEHELEPLQGKTLSFFSLA 182

Query: 440 HNSLSLGNTFKIDSPFPKFSYLSLSACNISAF------------------PRFLRTQDEL 481
            NSL    +         F  + L   ++S                       L     +
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242

Query: 482 SYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGP 541
                  + I     +  + + + S+ +++LSH F+  +    ++ L             
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL------------- 289

Query: 542 LPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVL 601
                  L+VL ++ N+       +   +  L VL+LS N L   +        P ++ +
Sbjct: 290 -----KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYI 343

Query: 602 DLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFP 661
           DL+ N +      TF     L++L+L +N L      ++     +  + +   K+     
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPK 398

Query: 662 YWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAM 721
             L       ++ L  N+   ++         P L+IL L+ N FS    ++        
Sbjct: 399 INL----TANLIHLSENRLE-NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP-- 451

Query: 722 RNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGK 781
                    L  L            L    ++      +    +   + F+G        
Sbjct: 452 --------SLEQL-----------FLGENMLQ------LAWETELCWDVFEG-------- 478

Query: 782 LHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHN 841
           L  L++L L+HN+     P    +L  L  L L+SN +   +        +L +L++S N
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLS-HNDLPANLEILDISRN 536

Query: 842 RLDGPIPHGPQ 852
           +L  P P    
Sbjct: 537 QLLAPNPDVFV 547

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  177 bits (450), Expect = 4e-46
 Identities = 116/545 (21%), Positives = 194/545 (35%), Gaps = 61/545 (11%)

Query: 220 IEYLDVSETSFSELP-DSIGNLKLLGRLMLGYSQFVGPV-PASLGNLTQLTLLHLMHNNF 277
            E L +S      +   S   L+ L  L LG       +   +  NL  L +L L  +  
Sbjct: 26  TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85

Query: 278 SGHIPSSLSNLVQLTYLDLSSNSFFGEI--PDIF-NLTQVSFFDLSNNQLAG-PIPSHGS 333
               P +   L  L  L L        +     F NL  ++  DLS NQ+    +     
Sbjct: 86  YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145

Query: 334 RLQNLVLIRLNNNSFSGTIPSWLF---SLPLLEYVRLSDNQLSGHIDE--------FPSK 382
           +L +L  I  ++N     +            L +  L+ N L   +          F + 
Sbjct: 146 KLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204

Query: 383 SLQNIYLSNNR------------LQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKL 430
            L+ + +S N             +  S   S+    ++       +N     +   FA L
Sbjct: 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP-DQNTFAGL 263

Query: 431 IK--LKYLYLSHNSLS--LGNTFKIDSPFPKFSYLSLSACNISAFPR-FLRTQDELSYLD 485
            +  +++L LSH  +       F           L+L+   I+          D L  L+
Sbjct: 264 ARSSVRHLDLSHGFVFSLNSRVF---ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320

Query: 486 LSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLG---YLDLRSNLLQGPL 542
           LS N +  ++ S     G   ++Y++L  N I  ++   +K L     LDLR N L    
Sbjct: 321 LSYNLLG-ELYSSNFY-GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378

Query: 543 PVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLD 602
            +P  S+  + +S N+     +  I   +  +++ LS NRL            P L +L 
Sbjct: 379 FIP--SIPDIFLSGNKLV--TLPKIN--LTANLIHLSENRLENLDILYFLLRVPHLQILI 432

Query: 603 LRNNRLNG-SIPGTFAESNWLRSLNLNNNELGGAIPQSL-----VNCTKVEVLDIGNIKI 656
           L  NR +  S   T +E+  L  L L  N L  A    L        + ++VL + +  +
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492

Query: 657 NDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLE 716
           N   P    +L  L+ L L SN+           +    L ILD+S N            
Sbjct: 493 NSLPPGVFSHLTALRGLSLNSNRL----TVLSHNDLPANLEILDISRNQLL-APNPDVFV 547

Query: 717 NLNAM 721
           +L+ +
Sbjct: 548 SLSVL 552

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  174 bits (444), Expect = 3e-45
 Identities = 123/668 (18%), Positives = 213/668 (31%), Gaps = 140/668 (20%)

Query: 82  NVISLDLSCSWLHGNIPT--NTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSL 139
               L LS       I T   +S   L  LQ L L       +     F    NL    L
Sbjct: 25  TTERLLLS----FNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 140 SDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMI 199
             S I               +  D+ + L   L  L L  C L      + +        
Sbjct: 81  GSSKI-------------YFLHPDAFQGL-FHLFELRLYFCGLSDAVLKDGY-------- 118

Query: 200 RLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPA 259
                 +L               LD+S+     L                          
Sbjct: 119 -FRNLKAL-------------TRLDLSKNQIRSLYL----------------------HP 142

Query: 260 SLGNLTQLTLLHLMHNNFSGHIPSSLSNL--VQLTYLDLSSNSF-------FGEIPDIFN 310
           S G L  L  +    N         L  L    L++  L++NS        +G+  + F 
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 311 LTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDN 370
              +   D+S N               + +    +N+ S +    L     +       +
Sbjct: 203 NMVLEILDVSGNGW------------TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250

Query: 371 QLS----GHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPY 425
            +              S++++ LS+  +  S+ S +FE L +L  L L  N  + I    
Sbjct: 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKI-ADE 308

Query: 426 MFAKLIKLKYLYLSHNSLSL--GNTFKIDSPFPKFSYLSLSACNISAFPR-FLRTQDELS 482
            F  L  L+ L LS+N L     + F      PK +Y+ L   +I+       +  ++L 
Sbjct: 309 AFYGLDNLQVLNLSYNLLGELYSSNF---YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365

Query: 483 YLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPL 542
            LDL +N +        +     S+  + LS N +  + +I                   
Sbjct: 366 TLDLRDNAL-------TTIHFIPSIPDIFLSGNKLVTLPKINL----------------- 401

Query: 543 PVPPSSLRVLLISNNQFTG-EIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVL 601
                +  ++ +S N+    +I++ +  +  L +L L+ NR +    +   + +PSL  L
Sbjct: 402 -----TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL 456

Query: 602 DLRNNRLNGSI-----PGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKI 656
            L  N L  +         F   + L+ L LN+N L    P    + T +  L + + ++
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516

Query: 657 NDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLE 716
                  L     L++L +  N+           + F  L +LD++ N F          
Sbjct: 517 TVLSHNDL--PANLEILDISRNQLLAP-----NPDVFVSLSVLDITHNKFICECELSTFI 569

Query: 717 NLNAMRNV 724
           N     NV
Sbjct: 570 NWLNHTNV 577

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  159 bits (403), Expect = 3e-40
 Identities = 108/536 (20%), Positives = 188/536 (35%), Gaps = 44/536 (8%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSD 141
           ++  L L    L   +  +    +L  L  L+LS N      +   F +  +L     S 
Sbjct: 98  HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157

Query: 142 SNINCKIPYEISFLKMSTVVLDSLKNLSS-SLTSLSLSDCILQGNFPINIFHLPNPQMIR 200
           + I               V    L+ L   +L+  SL+   L     ++     NP    
Sbjct: 158 NQI-------------FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204

Query: 201 LSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPAS 260
           + +   ++G    N WT  I     +  S S+   S+     +     G+     P   +
Sbjct: 205 VLEILDVSG----NGWTVDITGNFSNAISKSQ-AFSLILAHHIMGAGFGFHNIKDPDQNT 259

Query: 261 LGNLTQLTL--LHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFF 317
              L + ++  L L H             L  L  L+L+ N       + F  L  +   
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319

Query: 318 DLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHID 377
           +LS N L     S+   L  +  I L  N  +         L  L+ + L DN L+    
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT---T 376

Query: 378 EFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLY 437
                S+ +I+LS N+L  ++P           + L  N    +   Y   ++  L+ L 
Sbjct: 377 IHFIPSIPDIFLSGNKLV-TLPKINL---TANLIHLSENRLENLDILYFLLRVPHLQILI 432

Query: 438 LSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAF------PRFLRTQDELSYLDLSENKI 491
           L+ N  S  +  +  S  P    L L    +                  L  L L+ N +
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492

Query: 492 DGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWK-NLGYLDLRSNLLQGPLPVPPSSLR 550
           +  +P  +      +L  ++L+ N +T +       NL  LD+  N L  P P    SL 
Sbjct: 493 N-SLPPGVFS-HLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLS 550

Query: 551 VLLISNNQFTGEIIHSICDIIAL-DVLDLSNNRLNGTIPECIGNFSPSLSVLDLRN 605
           VL I++N+F        C++    + L+ +N  + G   +    +  S S + L +
Sbjct: 551 VLDITHNKF-----ICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFS 601

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  167 bits (426), Expect = 8e-45
 Identities = 100/476 (21%), Positives = 176/476 (36%), Gaps = 39/476 (8%)

Query: 236 SIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLD 295
           +   L    + +LG +     V     +L Q+T L              +  L  LT ++
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQIN 74

Query: 296 LSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSW 355
            S+N    +I  + NLT++    ++NNQ+A   P   + L NL  + L NN  +   P  
Sbjct: 75  FSNNQ-LTDITPLKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQITDIDP-- 129

Query: 356 LFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDS 415
           L +L  L  + LS N +S         SLQ +   N          +  L  L  L + S
Sbjct: 130 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISS 186

Query: 416 NNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFL 475
           N  S I+     AKL  L+ L  ++N +S                LSL+   +      L
Sbjct: 187 NKVSDISV---LAKLTNLESLIATNNQIS---DITPLGILTNLDELSLNGNQLKDIG-TL 239

Query: 476 RTQDELSYLDLSENKIDGQIPSWISEIGK-DSLSYVNLSHNFITKMKQI-PWKNLGYLDL 533
            +   L+ LDL+ N+I       ++ +     L+ + L  N I+ +  +     L  L+L
Sbjct: 240 ASLTNLTDLDLANNQISN-----LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLEL 294

Query: 534 RSNLLQGPLPVP-PSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIG 592
             N L+   P+    +L  L +  N  +   I  +  +  L  L   NN++  +    + 
Sbjct: 295 NENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKV--SDVSSLA 350

Query: 593 NFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIG 652
           N   +++ L   +N+++   P   A    +  L LN+     A      N +      + 
Sbjct: 351 NL-TNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNT--VK 405

Query: 653 NIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSG 708
           N+      P  + +        +  N    +    E   +F +   +      FSG
Sbjct: 406 NVTGALIAPATISDGGSYTEPDITWNLPSYTN---EVSYTFSQPVTIGKGTTTFSG 458

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  158 bits (401), Expect = 1e-41
 Identities = 101/483 (20%), Positives = 173/483 (35%), Gaps = 52/483 (10%)

Query: 291 LTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSG 350
           L    ++ ++   +I     L +     L    +   +    + L  +  ++ +      
Sbjct: 3   LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGI-- 58

Query: 351 TIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTD 410
                +  L  L  +  S+NQL+          L +I ++NN++    P  +  L NLT 
Sbjct: 59  KSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTG 116

Query: 411 LQLDSNNFSGIAEPYMFAKLIKLKYLYLSHN---------------SLSLGNTFKIDSPF 455
           L L +N  + I        L  L  L LS N                LS GN      P 
Sbjct: 117 LTLFNNQITDIDP---LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPL 173

Query: 456 PKFS---YLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGK-DSLSYVN 511
              +    L +S+  +S     L     L  L  + N+I       I+ +G   +L  ++
Sbjct: 174 ANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISD-----ITPLGILTNLDELS 227

Query: 512 LSHNFITKMKQI-PWKNLGYLDLRSNLLQGPLPVPP-SSLRVLLISNNQFTGEIIHSICD 569
           L+ N +  +  +    NL  LDL +N +    P+   + L  L +  NQ +   I  +  
Sbjct: 228 LNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN--ISPLAG 285

Query: 570 IIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNN 629
           + AL  L+L+ N+L    P  I N   +L+ L L  N ++   P   +    L+ L   N
Sbjct: 286 LTALTNLELNENQLEDISP--ISNL-KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 340

Query: 630 NELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEP 689
           N++      SL N T +  L  G+ +I+D  P  L NL  +  L L    +        P
Sbjct: 341 NKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-----AP 391

Query: 690 KESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKG 749
                 + I +   N     +    + +  +            Y  E  Y  S  VT+  
Sbjct: 392 VNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGK 451

Query: 750 TEI 752
              
Sbjct: 452 GTT 454

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  148 bits (377), Expect = 2e-38
 Identities = 103/522 (19%), Positives = 188/522 (36%), Gaps = 77/522 (14%)

Query: 96  NIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFL 155
            I    +   L       L   +      +   +    +T        I           
Sbjct: 13  PINQIFTDTALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIK---------- 59

Query: 156 KMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANN 215
                 +D ++ L ++LT ++ S+  L       + +L                      
Sbjct: 60  -----SIDGVEYL-NNLTQINFSNNQLTD--ITPLKNLTK-------------------- 91

Query: 216 WTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHN 275
               +  + ++    +++   + NL  L  L L  +Q     P  L NLT L  L L  N
Sbjct: 92  ----LVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 144

Query: 276 NFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRL 335
             S    S+LS L  L  L   +     ++  + NLT +   D+S+N+++         L
Sbjct: 145 TISD--ISALSGLTSLQQLSFGNQ--VTDLKPLANLTTLERLDISSNKVSDISVLAK--L 198

Query: 336 QNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS-KSLQNIYLSNNRL 394
            NL  +   NN  S   P  L  L  L+ + L+ NQL   I    S  +L ++ L+NN++
Sbjct: 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQI 255

Query: 395 QGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSP 454
               P  +  L  LT+L+L +N  S I+     A L  L  L L+ N L         S 
Sbjct: 256 SNLAP--LSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLE---DISPISN 307

Query: 455 FPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGK-DSLSYVNLS 513
               +YL+L   NIS     + +  +L  L    NK+     S +S +    ++++++  
Sbjct: 308 LKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFYNNKV-----SDVSSLANLTNINWLSAG 361

Query: 514 HNFITKMKQIPW-KNLGYLDLRSNLLQGPLPVPPSSLRVL-LISNNQFTGEIIHSICDII 571
           HN I+ +  +     +  L L             +++ +   + N         +I D  
Sbjct: 362 HNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGG 421

Query: 572 ALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIP 613
           +    D++ N  +    E    FS  ++ +       +G++ 
Sbjct: 422 SYTEPDITWNLPSY-TNEVSYTFSQPVT-IGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  145 bits (367), Expect = 4e-37
 Identities = 86/506 (16%), Positives = 174/506 (34%), Gaps = 80/506 (15%)

Query: 343 LNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSI 402
             +   +        +L       L    ++  + +     +  +      +       +
Sbjct: 9   TQDTPINQIFT--DTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGI--KSIDGV 64

Query: 403 FELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLS 462
             L NLT +   +N  + I        L KL  + +++N ++                  
Sbjct: 65  EYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIA------------------ 103

Query: 463 LSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGK-DSLSYVNLSHNFITKMK 521
               +I+           L+ L L  N+I       I  +    +L+ + LS N I+ + 
Sbjct: 104 ----DITPLANL----TNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDIS 150

Query: 522 QIPW-KNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSN 580
            +    +L  L   + +         ++L  L IS+N+ +   I  +  +  L+ L  +N
Sbjct: 151 ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATN 208

Query: 581 NRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSL 640
           N+++   P  +G    +L  L L  N+L     GT A    L  L+L NN++    P  L
Sbjct: 209 NQISDITP--LGIL-TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--L 261

Query: 641 VNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILD 700
              TK+  L +G  +I++  P  L  L  L  L L  N+    + +  P  +   L  L 
Sbjct: 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ----LEDISPISNLKNLTYLT 315

Query: 701 LSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTV 760
           L  NN S   P   + +L  ++ +     K+                  +++     LT 
Sbjct: 316 LYFNNISDISP---VSSLTKLQRLFFYNNKV------------------SDVSSLANLTN 354

Query: 761 FTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVA 820
              +    N         +  L  +  L L+   +T    +   N++   ++   +  + 
Sbjct: 355 INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412

Query: 821 GKIPKPLTSLTSLSVLNLSHNRLDGP 846
              P  ++   S +  +++ N     
Sbjct: 413 --APATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  116 bits (292), Expect = 2e-27
 Identities = 75/370 (20%), Positives = 138/370 (37%), Gaps = 33/370 (8%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSD 141
            ++ + ++    +  I   T L +L +L  L L +N    ++I        NL    LS 
Sbjct: 91  KLVDILMN----NNQIADITPLANLTNLTGLTLFNNQI--TDIDP-LKNLTNLNRLELSS 143

Query: 142 SNINCKIPYEISFLKMSTVVLD-------SLKNLSSSLTSLSLSDCILQGNFPINIFHLP 194
           + I+  I        +  +           L NL++ L  L +S   +       +  L 
Sbjct: 144 NTIS-DISALSGLTSLQQLSFGNQVTDLKPLANLTT-LERLDISSNKVSD--ISVLAKLT 199

Query: 195 NPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFV 254
           N + +  + N  ++   P    T+ ++ L ++     ++  ++ +L  L  L L  +Q  
Sbjct: 200 NLESLIATNN-QISDITPLGILTN-LDELSLNGNQLKDIG-TLASLTNLTDLDLANNQIS 256

Query: 255 GPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQV 314
              P  L  LT+LT L L  N  S    S L+ L  LT L+L+ N     I  I NL  +
Sbjct: 257 NLAP--LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED-ISPISNLKNL 311

Query: 315 SFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSG 374
           ++  L  N ++   P   S L  L  +   NN  S    S L +L  + ++    NQ+S 
Sbjct: 312 TYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD 367

Query: 375 HIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLK 434
                    +  + L++     +  +      N++      N    +  P   +      
Sbjct: 368 LTPLANLTRITQLGLNDQAWTNAPVNY---KANVSIPNTVKNVTGALIAPATISDGGSYT 424

Query: 435 YLYLSHNSLS 444
              ++ N  S
Sbjct: 425 EPDITWNLPS 434

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  160 bits (407), Expect = 2e-42
 Identities = 98/520 (18%), Positives = 181/520 (34%), Gaps = 95/520 (18%)

Query: 163 DSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEY 222
              +N+ S  T    +    + N P          + RL                     
Sbjct: 28  VEAENVKS-KTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQ-----------AHE 75

Query: 223 LDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIP 282
           L+++    S LP+   +L+    L+   +     +P    +L  L + +      S   P
Sbjct: 76  LELNNLGLSSLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP 131

Query: 283 SSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIR 342
                   L YL +S+N    ++P++ N + +   D+ NN L                  
Sbjct: 132 L-------LEYLGVSNNQL-EKLPELQNSSFLKIIDVDNNSLK----------------- 166

Query: 343 LNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS-KSLQNIYLSNNRLQGSIPSS 401
                    +P    SL   E++   +NQL   + E  +   L  IY  NN L+  +P  
Sbjct: 167 --------KLPDLPPSL---EFIAAGNNQLE-ELPELQNLPFLTAIYADNNSLK-KLPD- 212

Query: 402 IFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYL 461
               ++L  +   +N    + E      L  L  +Y  +N L       +    P    L
Sbjct: 213 --LPLSLESIVAGNNILEELPE---LQNLPFLTTIYADNNLLK-----TLPDLPPSLEAL 262

Query: 462 SLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMK 521
           ++    ++  P   ++   L++LD+SEN     +          +L Y+N S N I  + 
Sbjct: 263 NVRDNYLTDLPELPQS---LTFLDVSENIFS-GLSELPP-----NLYYLNASSNEIRSLC 313

Query: 522 QIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNN 581
            +   +L  L++ +N L   LP  P  L  L+ S N    E+     +   L  L +  N
Sbjct: 314 DL-PPSLEELNVSNNKLIE-LPALPPRLERLIASFNHLA-EVPELPQN---LKQLHVEYN 367

Query: 582 RLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLV 641
            L    P+   +    +  L + ++     +P        L+ L++  N L    P    
Sbjct: 368 PLR-EFPDIPES----VEDLRMNSHL--AEVPELPQN---LKQLHVETNPLR-EFPDIP- 415

Query: 642 NCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFH 681
               VE L + + ++ D + +      +L+  V   +  H
Sbjct: 416 --ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  154 bits (392), Expect = 2e-40
 Identities = 100/515 (19%), Positives = 187/515 (36%), Gaps = 78/515 (15%)

Query: 212 PANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLH 271
           P N   + ++      ++ +E+P    N+K        +S++    P   G   ++ +  
Sbjct: 5   PRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 272 LMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPS 330
           L                 Q   L+L++      +P+   +L        S N L   +P 
Sbjct: 65  LRDCLDR-----------QAHELELNNLG-LSSLPELPPHLES---LVASCNSLT-ELPE 108

Query: 331 HGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS-KSLQNIYL 389
               L++L++   N  + S   P        LEY+ +S+NQL   + E  +   L+ I +
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLE-KLPELQNSSFLKIIDV 160

Query: 390 SNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTF 449
            NN L+  +P       +L  +   +N    + E      L  L  +Y  +NSL      
Sbjct: 161 DNNSLK-KLPD---LPPSLEFIAAGNNQLEELPE---LQNLPFLTAIYADNNSLK----- 208

Query: 450 KIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSY 509
           K+         +      +   P        L+ +    N +   +P         SL  
Sbjct: 209 KLPDLPLSLESIVAGNNILEELPELQNLP-FLTTIYADNNLL-KTLPDLPP-----SLEA 261

Query: 510 VNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICD 569
           +N+  N++T + ++P ++L +LD+  N+  G L   P +L  L  S+N+     I S+CD
Sbjct: 262 LNVRDNYLTDLPELP-QSLTFLDVSENIFSG-LSELPPNLYYLNASSNE-----IRSLCD 314

Query: 570 IIA-LDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLN 628
           +   L+ L++SNN+L   +P         L  L    N L   +P        L+ L++ 
Sbjct: 315 LPPSLEELNVSNNKLI-ELPALPPR----LERLIASFNHLA-EVPELPQN---LKQLHVE 365

Query: 629 NNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFE 688
            N L    P    +      L + +       P    N   L+ L + +N         E
Sbjct: 366 YNPL-REFPDIPESVED---LRMNSHLAE--VPELPQN---LKQLHVETNPLR------E 410

Query: 689 PKESFPKLRILDLSINNFSGYLPERFLENLNAMRN 723
             +    +  L ++         E   E  + + +
Sbjct: 411 FPDIPESVEDLRMNSERVV-DPYEFAHETTDKLED 444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  147 bits (373), Expect = 5e-38
 Identities = 93/514 (18%), Positives = 171/514 (33%), Gaps = 101/514 (19%)

Query: 104 FHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLD 163
                LQ      ++   +E+       ++ T +  + S      P      +    V  
Sbjct: 8   VSNTFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQR-EMAVSR 64

Query: 164 SLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYL 223
               L      L L++  L  + P    HL                           E L
Sbjct: 65  LRDCLDRQAHELELNNLGLS-SLPELPPHL---------------------------ESL 96

Query: 224 DVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPA---------------SLGNLTQLT 268
             S  S +ELP+   +LK L              P                 L N + L 
Sbjct: 97  VASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLK 156

Query: 269 LLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPI 328
           ++ + +N+    +P    +L    ++   +N    E+P++ NL  ++     NN L   +
Sbjct: 157 IIDVDNNSLK-KLPDLPPSL---EFIAAGNNQL-EELPELQNLPFLTAIYADNNSLKK-L 210

Query: 329 PSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIY 388
           P     L+++V     NN     +P  L +LP L  +   +N L   + + P  SL+ + 
Sbjct: 211 PDLPLSLESIVA---GNNILE-ELPE-LQNLPFLTTIYADNNLLK-TLPDLPP-SLEALN 263

Query: 389 LSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNT 448
           + +N L   +P       +LT L +  N FSG++E         L YL  S N +     
Sbjct: 264 VRDNYLT-DLPELPQ---SLTFLDVSENIFSGLSE-----LPPNLYYLNASSNEIR---- 310

Query: 449 FKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLS 508
             +    P    L++S   +   P        L  L  S N +  ++P         +L 
Sbjct: 311 -SLCDLPPSLEELNVSNNKLIELPALPPR---LERLIASFNHL-AEVPELPQ-----NLK 360

Query: 509 YVNLSHNFITKMKQIPWK------------------NLGYLDLRSNLLQGPLPVPPSSLR 550
            +++ +N + +   IP                    NL  L + +N L+   P  P S+ 
Sbjct: 361 QLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE-FPDIPESVE 419

Query: 551 VLLISNNQFTGEIIHSICDIIALDVLDLSNNRLN 584
            L +++ +       +      L+     ++  +
Sbjct: 420 DLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  138 bits (350), Expect = 5e-35
 Identities = 93/541 (17%), Positives = 184/541 (34%), Gaps = 96/541 (17%)

Query: 306 PDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYV 365
           P   + T +      ++ L   +P     +++        + +    P        +   
Sbjct: 5   PRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVS 63

Query: 366 RLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPY 425
           RL D            +    + L+N  L  S+P       +L  L    N+ + +  P 
Sbjct: 64  RLRDC---------LDRQAHELELNNLGLS-SLPELPP---HLESLVASCNSLTEL--PE 108

Query: 426 MFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLD 485
           +   L  L     +  +LS           P   YL +S   +   P    +   L  +D
Sbjct: 109 LPQSLKSLLVDNNNLKALS--------DLPPLLEYLGVSNNQLEKLPELQNSS-FLKIID 159

Query: 486 LSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPW-KNLGYLDLRSNLLQGPLPV 544
           +  N +  ++P         SL ++   +N + ++ ++     L  +   +N L+  LP 
Sbjct: 160 VDNNSLK-KLPDLPP-----SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK-LPD 212

Query: 545 PPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLR 604
            P SL  ++  NN      +  + ++  L  +   NN L  T+P+   +    L  L++R
Sbjct: 213 LPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPS----LEALNVR 265

Query: 605 NNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWL 664
           +N L   +P        L  L+++ N   G + +   N   +  L+  + +I        
Sbjct: 266 DNYLT-DLPELPQS---LTFLDVSENIFSG-LSELPPN---LYYLNASSNEIRS----LC 313

Query: 665 GNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERF--LENLNAMR 722
              P L+ L + +NK        E     P+L  L  S N+ +  +PE    L+ L+   
Sbjct: 314 DLPPSLEELNVSNNKLI------ELPALPPRLERLIASFNHLA-EVPELPQNLKQLHVEY 366

Query: 723 NVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKL 782
           N       LR   +                E  + L +           +  +++V    
Sbjct: 367 N------PLREFPDI--------------PESVEDLRM-----------NSHLAEVPELP 395

Query: 783 HSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNR 842
            +L+ L++  N    + P    ++   E L ++S  V         +   L      H+ 
Sbjct: 396 QNLKQLHVETNPLR-EFPDIPESV---EDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

Query: 843 L 843
            
Sbjct: 452 H 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 82.7 bits (205), Expect = 1e-16
 Identities = 62/354 (17%), Positives = 110/354 (31%), Gaps = 65/354 (18%)

Query: 500 SEIGKDSLSYVNLSHNFITKMKQIPW--KNLGYLDLRSNLLQGPLPVPPSSLRVLLISNN 557
             +    L       + +T+M       K+        +  +   P      R + +S  
Sbjct: 6   RNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 558 QFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFA 617
                     C       L+L+N  L+ ++PE   +    L  L    N L   +P    
Sbjct: 66  --------RDCLDRQAHELELNNLGLS-SLPELPPH----LESLVASCNSLT-ELPELPQ 111

Query: 618 ESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRS 677
               L   N N   L   +P  L      E L + N ++       L N   L+++ + +
Sbjct: 112 SLKSLLVDNNNLKALSD-LPPLL------EYLGVSNNQLEKLPE--LQNSSFLKIIDVDN 162

Query: 678 NKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEE 737
           N         +  +  P L  +    N     LPE  L+NL  +  + AD   L+ L + 
Sbjct: 163 NSLK------KLPDLPPSLEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLKKLPDL 213

Query: 738 YYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQV--IGKLHSLRLLNLSHNHF 795
                                    +I   +N     + ++  +  L  L  +   +N  
Sbjct: 214 --------------------PLSLESIVAGNN----ILEELPELQNLPFLTTIYADNNLL 249

Query: 796 TGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPH 849
              +P    +L  L   D    +    +P+   SLT L V     + L    P+
Sbjct: 250 K-TLPDLPPSLEALNVRDNYLTD----LPELPQSLTFLDVSENIFSGLSELPPN 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 81.6 bits (202), Expect = 3e-16
 Identities = 62/365 (16%), Positives = 123/365 (33%), Gaps = 70/365 (19%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSD 141
            +  L +S + L   +P    L +   L+ +++ +N      +        +L   +  +
Sbjct: 132 LLEYLGVSNNQLE-KLP---ELQNSSFLKIIDVDNN-----SLKKLPDLPPSLEFIAAGN 182

Query: 142 SNINCKIPYEISFLK------MSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPN 195
           + +  ++P E+  L            L  L +L  SL S+   + IL+      + +LP 
Sbjct: 183 NQLE-ELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE--ELPELQNLPF 238

Query: 196 PQMIRLSQN-----PSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGY 250
              I    N     P L            +E L+V +   ++LP+   +L  L      +
Sbjct: 239 LTTIYADNNLLKTLPDLPPS---------LEALNVRDNYLTDLPELPQSLTFLDVSENIF 289

Query: 251 SQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFN 310
           S           NL  L        N    +     +L     L++S+N    E+P    
Sbjct: 290 SGL----SELPPNLYYLNASS----NEIRSLCDLPPSL---EELNVSNNKL-IELPA--L 335

Query: 311 LTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPL--------- 361
             ++     S N LA  +P      QNL  + +  N      P    S+           
Sbjct: 336 PPRLERLIASFNHLAE-VPEL---PQNLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAE 390

Query: 362 -------LEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLD 414
                  L+ + +  N L     + P  S++++ +++ R+      +      L D   +
Sbjct: 391 VPELPQNLKQLHVETNPLR-EFPDIPE-SVEDLRMNSERVVDPYEFAHETTDKLEDDVFE 448

Query: 415 SNNFS 419
            ++  
Sbjct: 449 HHHHH 453

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  161 bits (410), Expect = 3e-42
 Identities = 91/521 (17%), Positives = 190/521 (36%), Gaps = 56/521 (10%)

Query: 220 IEYLDVSETSFSELP-DSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFS 278
           ++ LD+S    + +    +     L  L+L  S+       +  +L  L  L L  N+ S
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87

Query: 279 GHIPSSLSNLVQLTYLDLSSNSF--FGEIPDIFNLTQVSFFDLSNNQLAGPIPSHG-SRL 335
               S    L  L YL+L  N +   G      NLT +    + N +    I     + L
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147

Query: 336 QNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS--KSLQNIYLSNNR 393
            +L  + +   S        L S+  + ++ L  ++ +  ++ F     S++ + L +  
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207

Query: 394 LQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDS 453
           L     S +      + ++  +   S + +   F +L+KL    L  + +        D 
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDES-FNELLKLLRYILELSEVEF-----DDC 261

Query: 454 PFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLS 513
                   + S  ++ +    + T   +  L + +  +   + +  S + K  +  + + 
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVT-IRRLHIPQFYLFYDLSTVYSLLEK--VKRITVE 318

Query: 514 HNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHS---ICDI 570
           ++ +  +     ++L                   SL  L +S N    E + +       
Sbjct: 319 NSKVFLVPCSFSQHL------------------KSLEFLDLSENLMVEEYLKNSACKGAW 360

Query: 571 IALDVLDLSNNRLNGTIPECIGNFS--PSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLN 628
            +L  L LS N L  ++ +         +L+ LD+  N  +  +P +      +R LNL+
Sbjct: 361 PSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLS 418

Query: 629 NNELGGAIPQSLVNC--TKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVRE 686
           +  +     + +  C    +EVLD+ N  ++         LP LQ L +  NK       
Sbjct: 419 STGI-----RVVKTCIPQTLEVLDVSNNNLDSFSL----FLPRLQELYISRNKLK----T 465

Query: 687 FEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSAD 727
                 FP L ++ +S N     +P+   + L +++ +   
Sbjct: 466 LPDASLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLH 505

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  152 bits (385), Expect = 6e-39
 Identities = 101/528 (19%), Positives = 192/528 (36%), Gaps = 40/528 (7%)

Query: 108 HLQTLNLSHNDFDYSEISSG-FSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLK 166
            +++L+LS N    + I  G      NL    L  S I             +T+  D+  
Sbjct: 27  AMKSLDLSFNKI--TYIGHGDLRACANLQVLILKSSRI-------------NTIEGDAFY 71

Query: 167 NLSSSLTSLSLSDCILQGNFPINIF-HLPNPQMIRLSQNP--SLAGKFPANNWTSPIEYL 223
           +L S L  L LSD  L  +   + F  L + + + L  NP  +L       N T+ ++ L
Sbjct: 72  SLGS-LEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN-LQTL 128

Query: 224 DVSET-SFSELP-DSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHI 281
            +    +FSE+       L  L  L +           SL ++  +  L L  +  +  +
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188

Query: 282 PSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLI 341
                 L  + YL+L   +          + +     +      G + +  S  + L L+
Sbjct: 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDE-VSSPMKKLAFRGSVLTDESFNELLKLL 247

Query: 342 RLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSS 401
           R               +L  L     S++ +   + +  + +++ +++    L   + + 
Sbjct: 248 RYILELSEVEFDD--CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305

Query: 402 IFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS--LGNTFKIDSPFPKFS 459
              L  +  + ++++    +        L  L++L LS N +             +P   
Sbjct: 306 YSLLEKVKRITVENSKVFLV-PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364

Query: 460 YLSLSACNISAFPRFLRTQDELS---YLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNF 516
            L LS  ++ +  +       L     LD+S N     +P        + + ++NLS   
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQ--WPEKMRFLNLSSTG 421

Query: 517 ITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVL 576
           I  +K    + L  LD+ +N L     +    L+ L IS N+     +        L V+
Sbjct: 422 IRVVKTCIPQTLEVLDVSNNNLDS-FSLFLPRLQELYISRNKLK--TLPDASLFPVLLVM 478

Query: 577 DLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRS 624
            +S N+L  ++P+ I +   SL  + L  N  + S P     S WL  
Sbjct: 479 KISRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 525

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  147 bits (374), Expect = 1e-37
 Identities = 95/545 (17%), Positives = 188/545 (34%), Gaps = 45/545 (8%)

Query: 309 FNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLS 368
            +       D  +      IPS  +    +  + L+ N  +      L +   L+ + L 
Sbjct: 2   LSCDASGVCDGRSRSFTS-IPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILK 58

Query: 369 DNQLSG-HIDEFPS-KSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPY 425
            ++++    D F S  SL+++ LS+N L  S+ SS F  L +L  L L  N +  +    
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117

Query: 426 MFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAF-PRFLRTQDELSYL 484
           +F  L  L+ L + +            +     + L + A ++  +  + L++  ++ +L
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177

Query: 485 DLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPV 544
            L  ++    +  +   +   S+ Y+ L    + + +  P            L      +
Sbjct: 178 TLHLSESAFLLEIFADILS--SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235

Query: 545 PPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLR 604
              S   LL               D     + D + +  +  + E     + ++  L + 
Sbjct: 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS-ESDVVSELGKVETVTIRRLHIP 294

Query: 605 NNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYW- 663
              L   +   ++    ++ + + N+++         +   +E LD+    + + +    
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 664 --LGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAM 721
              G  P LQ LVL  N      +  E   +   L  LD+S N F   +P+         
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP---- 409

Query: 722 RNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEM--QKILTVFTTIDFSSNGFDGEISQVI 779
                   K+R+L            L  T I +    I      +D S+N     +    
Sbjct: 410 -------EKMRFLN-----------LSSTGIRVVKTCIPQTLEVLDVSNNN----LDSFS 447

Query: 780 GKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLS 839
             L  L+ L +S N     +P +      L  + +S N +          LTSL  + L 
Sbjct: 448 LFLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505

Query: 840 HNRLD 844
            N  D
Sbjct: 506 TNPWD 510

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  156 bits (396), Expect = 6e-41
 Identities = 76/509 (14%), Positives = 158/509 (31%), Gaps = 64/509 (12%)

Query: 233 LPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLT 292
           + +   N        +  S     + +   +   +  L L  N  S    + L+   +L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 293 YLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTI 352
            L+LSSN  + E  D+ +L+ +   DL+NN +                            
Sbjct: 62  LLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQE-------------------------- 94

Query: 353 PSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQ 412
              L   P +E +  ++N +S  +     +  +NIYL+NN++             +  L 
Sbjct: 95  ---LLVGPSIETLHAANNNIS-RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 413 LDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFP 472
           L  N    +    + A    L++L L +N +      K    F K   L LS+  ++   
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKLAFMG 207

Query: 473 RFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLD 532
              ++   ++++ L  NK+   I   +      +L + +L  N         +      D
Sbjct: 208 PEFQSAAGVTWISLRNNKLV-LIEKALRFS--QNLEHFDLRGN--------GFHCGTLRD 256

Query: 533 LRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRL----NGTIP 588
             S              RV  ++          +  +     +                 
Sbjct: 257 FFSKN-----------QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFAD 305

Query: 589 ECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEV 648
             I       ++L  + +           ++   R ++    +    I Q  +       
Sbjct: 306 RLIALKRKEHALLSGQGSETERLECERENQAR-QREIDALKEQYRTVIDQVTLRKQAKIT 364

Query: 649 LDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSG 708
           L+     +++          EL   + ++    G +      E    L++L   +  +  
Sbjct: 365 LEQKKKALDEQVSNGRRAHAELDGTLQQAV---GQIELQHATEEQSPLQLLRAIVKRYEE 421

Query: 709 YLPERFLENLNAMRNVSADEGKLRYLGEE 737
              E+     NA+R+    + K   L EE
Sbjct: 422 MYVEQQSVQNNAIRDWDMYQHKETQLAEE 450

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  125 bits (316), Expect = 1e-30
 Identities = 62/464 (13%), Positives = 126/464 (27%), Gaps = 79/464 (17%)

Query: 383 SLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNS 442
             +   ++++ L+ ++ S      N+ +L L  N  S I      A   KL+ L LS N 
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNV 69

Query: 443 LSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEI 502
           L                 L L+   +            +  L  + N I     S +S  
Sbjct: 70  LYETLDL---ESLSTLRTLDLNNNYVQELLVGPS----IETLHAANNNI-----SRVSCS 117

Query: 503 GKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTG- 561
                  + L++N IT    +   + G                 S ++ L +  N+    
Sbjct: 118 RGQGKKNIYLANNKIT---MLRDLDEGCR---------------SRVQYLDLKLNEIDTV 159

Query: 562 EIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNW 621
                      L+ L+L  N +   +   +      L  LDL +N+L   +   F  +  
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 622 LRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKIN-DAFPYWLGNLPELQVLVLRSNKF 680
           +  ++L NN+L   I ++L     +E  D+     +      +      +Q +  ++ K 
Sbjct: 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274

Query: 681 HGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQ 740
                  + +E      +           LP  F + L A++                  
Sbjct: 275 ----LTGQNEEECTVPTLGHYGAYCCE-DLPAPFADRLIALKRKEHALLSG--------- 320

Query: 741 DSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIP 800
                                             +          R ++     +   I 
Sbjct: 321 ---------------------------QGSETERLECERENQARQREIDALKEQYRTVID 353

Query: 801 SSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLD 844
                     +L+     +  ++     +   L           
Sbjct: 354 QVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI 397

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  123 bits (310), Expect = 9e-30
 Identities = 76/464 (16%), Positives = 150/464 (32%), Gaps = 36/464 (7%)

Query: 162 LDSLKNLSSSLTSLSLSDCILQGNFPINIFH-LPNPQMIRLSQNP--SLAGKFPANNWTS 218
           +  +K   +      ++D  L+     ++     N + + LS NP   ++    A    +
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAP--FT 58

Query: 219 PIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFS 278
            +E L++S     E  D + +L  L  L L  +         L     +  LH  +NN S
Sbjct: 59  KLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS 112

Query: 279 GHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQLAG-PIPSHGSRLQ 336
             +    S       + L++N             ++V + DL  N++         +   
Sbjct: 113 -RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 337 NLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS-KSLQNIYLSNNRLQ 395
            L  + L  N     +   +     L+ + LS N+L+    EF S   +  I L NN+L 
Sbjct: 170 TLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV 227

Query: 396 GSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPF 455
             I  ++    NL    L  N F        F+K  +++ +         G   + +   
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE-ECTV 285

Query: 456 PKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKD-----SLSYV 510
           P   +     C     P      D L  L   E+ +     S    +  +         +
Sbjct: 286 PTLGHYGAYCCEDLPAPFA----DRLIALKRKEHALLSGQGSETERLECERENQARQREI 341

Query: 511 NLSHNFITKMKQ---IPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTG--EIIH 565
           +        +     +  +    L+ +   L   +     +   L  +  Q  G  E+ H
Sbjct: 342 DALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQH 401

Query: 566 SICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLN 609
           +  +   L +L     R      E     + ++   D+  ++  
Sbjct: 402 ATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  108 bits (272), Expect = 5e-25
 Identities = 73/478 (15%), Positives = 149/478 (31%), Gaps = 82/478 (17%)

Query: 86  LDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSG-FSRFRNLTHFSLSDSNI 144
             ++ S L   + +        +++ L+LS N    S+IS+   + F  L   +LS + +
Sbjct: 15  EKVTDSSLKQALAS--LRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVL 70

Query: 145 NCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQN 204
                               L++L S+L +L L++  +Q                 L   
Sbjct: 71  Y---------------ETLDLESL-STLRTLDLNNNYVQ----------------ELLVG 98

Query: 205 PSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNL 264
           PS+             E L  +  + S +  S    +    + L  ++         G  
Sbjct: 99  PSI-------------ETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCR 143

Query: 265 TQLTLLHLMHNNFSG-HIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQ 323
           +++  L L  N     +     ++   L +L+L  N  + ++       ++   DLS+N+
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNK 202

Query: 324 LAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLS-GHIDEFPSK 382
           LA  +         +  I L NN     I   L     LE+  L  N    G + +F SK
Sbjct: 203 LAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 383 SLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNS 442
           + +   ++   ++     +  E    T     +     +  P+      +L  L    ++
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF----ADRLIALKRKEHA 316

Query: 443 LSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEI 502
           L                 LS               Q     +D  + +    +   ++  
Sbjct: 317 L-----------------LSGQGSETERLECERENQARQREIDALKEQYR-TVIDQVTL- 357

Query: 503 GKDSLSYVNLSHNFITKMKQIPWKNLGYLD--LRSNLLQGPLPVPPSSLRVLLISNNQ 558
            K +   +      + +      +    LD  L+  + Q  L         L +    
Sbjct: 358 RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAI 415

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 93.4 bits (232), Expect = 6e-20
 Identities = 44/417 (10%), Positives = 113/417 (27%), Gaps = 42/417 (10%)

Query: 85  SLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNI 144
            L+LS       +     L  L  L+TL+L++N     E+  G     ++     +++NI
Sbjct: 62  LLNLS----SNVLYETLDLESLSTLRTLDLNNNYV--QELLVG----PSIETLHAANNNI 111

Query: 145 NCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQN 204
           + ++                  +      ++ L++  +     ++       Q + L  N
Sbjct: 112 S-RVS----------------CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

Query: 205 P--SLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLG 262
              ++     A +  + +E+L++      ++   +     L  L L  ++    +     
Sbjct: 155 EIDTVNFAELAASSDT-LEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQ 211

Query: 263 NLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNN 322
           +   +T + L +N     I  +L     L + DL  N F       F         ++  
Sbjct: 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 323 QLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSG------HI 376
            +      +        L              +   L  L+    +     G        
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLEC 330

Query: 377 DEFPSKSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAKLIKLKY 435
           +       + I     + + ++   +         L+                   +L  
Sbjct: 331 ERENQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQ-VSNGRRAHAELDG 388

Query: 436 LYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKID 492
                           +    +     +         +     + +   D+ ++K  
Sbjct: 389 TLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 87.6 bits (217), Expect = 4e-18
 Identities = 51/236 (21%), Positives = 95/236 (40%), Gaps = 13/236 (5%)

Query: 611 SIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPEL 670
           +I       N  +   + ++ L  A+     +   V+ LD+    ++      L    +L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 671 QVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRN--VSADE 728
           ++L L SN  +    E    ES   LR LDL+ N     L    +E L+A  N       
Sbjct: 61  ELLNLSSNVLY----ETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC 116

Query: 729 GKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDG-EISQVIGKLHSLRL 787
            + +     Y  ++ +  L+  +       +    +D   N  D    +++     +L  
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDE---GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 788 LNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRL 843
           LNL +N     +   +   AKL++LDLSSN +A  +     S   ++ ++L +N+L
Sbjct: 174 LNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.9 bits (158), Expect = 5e-11
 Identities = 35/371 (9%), Positives = 80/371 (21%), Gaps = 77/371 (20%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSD 141
              ++ L+ + +   +           +Q L+L  N+ D    +   +    L H +L  
Sbjct: 121 GKKNIYLANNKIT-MLRDLD-EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 142 SNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRL 201
           + I   +  ++ F               + L +L LS   L                   
Sbjct: 179 NFIY-DVKGQVVF---------------AKLKTLDLSSNKLA-FMGPEFQSAAG------ 215

Query: 202 SQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASL 261
                             + ++ +       +  ++                        
Sbjct: 216 ------------------VTWISLRNNKLVLIEKAL------------------------ 233

Query: 262 GNLTQLTLLHLMHNNFS-GHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLS 320
                L    L  N F  G +    S   ++  +   +        +    T  +     
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE-ECTVPTLGHYG 292

Query: 321 NNQLAGPIPSHGSRLQNLVLIRLNNNSFSG----TIPSWLFSLPLLEYVRLSDNQLSGHI 376
                        RL  L        S  G     +     +      +     Q    I
Sbjct: 293 AYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVI 352

Query: 377 DEF--PSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLK 434
           D+     ++   +      L   + +       L      +     +       +   L+
Sbjct: 353 DQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHA--TEEQSPLQ 410

Query: 435 YLYLSHNSLSL 445
            L         
Sbjct: 411 LLRAIVKRYEE 421

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.5 bits (144), Expect = 3e-09
 Identities = 16/74 (21%), Positives = 32/74 (43%)

Query: 775 ISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLS 834
           I ++    +  ++  ++ +     + S   +   ++ LDLS N ++      L   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 835 VLNLSHNRLDGPIP 848
           +LNLS N L   + 
Sbjct: 62  LLNLSSNVLYETLD 75

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  139 bits (353), Expect = 2e-36
 Identities = 75/362 (20%), Positives = 147/362 (40%), Gaps = 33/362 (9%)

Query: 162 LDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNP--SLAGKFPANNWTSP 219
           +    +L+       L    +     +    L +   + ++     S+ G     N    
Sbjct: 15  IFPDADLAE-GIRAVLQKASVTD--VVTQEELESITKLVVAGEKVASIQGIEYLTN---- 67

Query: 220 IEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSG 279
           +EYL+++    +++   + NL  L  L +G ++      ++L NLT L  L+L  +N S 
Sbjct: 68  LEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISD 124

Query: 280 HIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLV 339
              S L+NL ++  L+L +N    ++  + N+T +++  ++ +++    P   + L +L 
Sbjct: 125 --ISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPI--ANLTDLY 180

Query: 340 LIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIP 399
            + LN N      P  L SL  L Y     NQ++          L ++ + NN++    P
Sbjct: 181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP 238

Query: 400 SSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFS 459
             +  L  LT L++ +N  S I        L KLK L +  N +S      + +   + +
Sbjct: 239 --LANLSQLTWLEIGTNQISDINA---VKDLTKLKMLNVGSNQIS---DISVLNNLSQLN 290

Query: 460 YLSLSACNISAF-PRFLRTQDELSYLDLSENKIDGQIPSWISEIGK-DSLSYVNLSHNFI 517
            L L+   +       +     L+ L LS+N I       I  +     +   + ++  I
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-----IRPLASLSKMDSADFANQVI 345

Query: 518 TK 519
            K
Sbjct: 346 KK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  134 bits (339), Expect = 2e-34
 Identities = 74/441 (16%), Positives = 151/441 (34%), Gaps = 102/441 (23%)

Query: 408 LTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACN 467
              L       + I      A L +     L   S++                      +
Sbjct: 2   AATLATLPAPINQIFP---DADLAEGIRAVLQKASVT----------------------D 36

Query: 468 ISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGK-DSLSYVNLSHNFITKMKQIPW- 525
           +          + ++ L ++  K+       I  I    +L Y+NL+ N IT +  +   
Sbjct: 37  VVTQEEL----ESITKLVVAGEKVAS-----IQGIEYLTNLEYLNLNGNQITDISPLSNL 87

Query: 526 KNLGYLDLRSNLLQGPLPVPP-SSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLN 584
             L  L + +N +     +   ++LR L ++ +  +   I  + ++  +  L+L  N   
Sbjct: 88  VKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHN- 144

Query: 585 GTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCT 644
            +    + N    L+ L +  +++    P   A    L SL+LN N++    P  L + T
Sbjct: 145 LSDLSPLSNM-TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLT 199

Query: 645 KVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSIN 704
            +        +I D  P  + N+  L  L + +NK    + +  P  +  +L  L++  N
Sbjct: 200 SLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK----ITDLSPLANLSQLTWLEIGTN 253

Query: 705 NFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTI 764
             S       +  +  +  +                                       +
Sbjct: 254 QISD------INAVKDLTKL-------------------------------------KML 270

Query: 765 DFSSNGFDGEISQV--IGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGK 822
           +  SN    +IS +  +  L  L  L L++N    +    +G L  L +L LS N++   
Sbjct: 271 NVGSN----QISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326

Query: 823 IPKPLTSLTSLSVLNLSHNRL 843
            P  L SL+ +   + ++  +
Sbjct: 327 RP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  128 bits (323), Expect = 2e-32
 Identities = 70/371 (18%), Positives = 136/371 (36%), Gaps = 67/371 (18%)

Query: 480 ELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQI-PWKNLGYLDLRSNLL 538
           E     L +  +   +     E+  +S++ + ++   +  ++ I    NL YL+L  N +
Sbjct: 23  EGIRAVLQKASVTDVVT--QEEL--ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQI 78

Query: 539 QGPLPVPP-SSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPS 597
               P+     L  L I  N+ T   I ++ ++  L  L L+ + ++   P  + N    
Sbjct: 79  TDISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP--LANL-TK 133

Query: 598 LSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKIN 657
           +  L+L  N     +    +    L  L +  +++    P  + N T +  L +   +I 
Sbjct: 134 MYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190

Query: 658 DAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLEN 717
           D  P  L +L  L       N+    + +  P  +  +L  L +  N  +   P   L  
Sbjct: 191 DISP--LASLTSLHYFTAYVNQ----ITDITPVANMTRLNSLKIGNNKITDLSPLANLSQ 244

Query: 718 LNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQ 777
           L                                           T ++  +N      + 
Sbjct: 245 L-------------------------------------------TWLEIGTNQISDINA- 260

Query: 778 VIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLN 837
            +  L  L++LN+  N  +    S L NL++L SL L++N +  +  + +  LT+L+ L 
Sbjct: 261 -VKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 838 LSHNRLDGPIP 848
           LS N +    P
Sbjct: 318 LSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  128 bits (323), Expect = 3e-32
 Identities = 72/364 (19%), Positives = 139/364 (38%), Gaps = 63/364 (17%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSD 141
           ++  L ++       + +   + +L +L+ LNL+ N    ++IS   S    LT+  +  
Sbjct: 45  SITKLVVA----GEKVASIQGIEYLTNLEYLNLNGNQI--TDISP-LSNLVKLTNLYIGT 97

Query: 142 SNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRL 201
           + I                 + +L+NL ++L  L L++  +       + +L        
Sbjct: 98  NKIT---------------DISALQNL-TNLRELYLNEDNISD--ISPLANLTK------ 133

Query: 202 SQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASL 261
                             +  L++           + N+  L  L +  S+     P  +
Sbjct: 134 ------------------MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--I 173

Query: 262 GNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSN 321
            NLT L  L L +N      P  L++L  L Y     N    +I  + N+T+++   + N
Sbjct: 174 ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQ-ITDITPVANMTRLNSLKIGN 230

Query: 322 NQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS 381
           N++    P   + L  L  + +  N  S    + +  L  L+ + +  NQ+S  I    +
Sbjct: 231 NKITDLSPL--ANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD-ISVLNN 285

Query: 382 -KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSH 440
              L +++L+NN+L       I  L NLT L L  N+ + I      A L K+     ++
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFAN 342

Query: 441 NSLS 444
             + 
Sbjct: 343 QVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.9 bits (154), Expect = 1e-10
 Identities = 37/201 (18%), Positives = 59/201 (29%), Gaps = 55/201 (27%)

Query: 649 LDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSG 708
           L      IN  FP    +L E    VL+       V +   +E    +  L ++    + 
Sbjct: 5   LATLPAPINQIFP--DADLAEGIRAVLQKAS----VTDVVTQEELESITKLVVAGEKVAS 58

Query: 709 YLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSS 768
                +L NL                                             ++ + 
Sbjct: 59  IQGIEYLTNL-------------------------------------------EYLNLNG 75

Query: 769 NGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLT 828
           N         +  L  L  L +  N  T    S+L NL  L  L L+ +N++     PL 
Sbjct: 76  NQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISD--ISPLA 129

Query: 829 SLTSLSVLNLSHNRLDGPIPH 849
           +LT +  LNL  N     +  
Sbjct: 130 NLTKMYSLNLGANHNLSDLSP 150

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  128 bits (323), Expect = 1e-32
 Identities = 53/326 (16%), Positives = 113/326 (34%), Gaps = 23/326 (7%)

Query: 263 NLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSN 321
           N  +  +  +  ++    + S   +   +  LDLS N             T++   +LS+
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 322 NQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS 381
           N L   +      L  L  + LNNN         L   P +E +  ++N +S  +     
Sbjct: 68  NVLYETLDLES--LSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVSCSRG 119

Query: 382 KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHN 441
           +  +NIYL+NN++             +  L L  N    +    + A    L++L L +N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 442 SLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISE 501
            +      K    F K   L LS+  ++      ++   ++++ L  NK+   I   +  
Sbjct: 180 FIY---DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235

Query: 502 IGKDSLSYVNLSHNFIT----KMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNN 557
               +L + +L  N       +      + +  +  ++            ++  L     
Sbjct: 236 S--QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

Query: 558 QFTGEIIHSICDIIALDVLDLSNNRL 583
               ++     D     ++ L ++  
Sbjct: 294 YCCEDLPAPFAD----RLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  119 bits (300), Expect = 1e-29
 Identities = 69/357 (19%), Positives = 125/357 (35%), Gaps = 63/357 (17%)

Query: 305 IPDIF-NLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLE 363
           I +I  N  +     ++++ L   + S      N+  + L+ N  S    + L     LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 364 YVRLSDNQLSGHIDEFPS-KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIA 422
            + LS N L     +  S  +L+ + L+NN +       +    ++  L   +NN S ++
Sbjct: 62  LLNLSSNVLY-ETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVS 115

Query: 423 EPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELS 482
                ++    K +YL++N ++                  L   +     R       + 
Sbjct: 116 ----CSRGQGKKNIYLANNKIT-----------------MLRDLDEGCRSR-------VQ 147

Query: 483 YLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKM-KQIPWKNLGYLDLRSNLLQGP 541
           YLDL  N+ID  +         D+L ++NL +NFI  +  Q+ +  L  LDL        
Sbjct: 148 YLDLKLNEID-TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDL-------- 198

Query: 542 LPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVL 601
                        S+N+    +         +  + L NN+L   I + +     +L   
Sbjct: 199 -------------SSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS-QNLEHF 242

Query: 602 DLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKIND 658
           DLR N  +         S   R   +    +     Q+   CT   +   G     D
Sbjct: 243 DLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  117 bits (294), Expect = 8e-29
 Identities = 55/330 (16%), Positives = 119/330 (36%), Gaps = 27/330 (8%)

Query: 281 IPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQLAGPIPSHGSRLQNLV 339
           I     N  +     ++ +S    +  +  +   V   DLS N L+    +  +    L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 340 LIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIP 399
           L+ L++N         L SL  L  + L++N +    +     S++ ++ +NN +   + 
Sbjct: 62  LLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQ---ELLVGPSIETLHAANNNIS-RVS 115

Query: 400 SSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFS 459
            S  +     ++ L +N  + +          +++YL L  N +   N  ++ +      
Sbjct: 116 CSRGQ--GKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 460 YLSLSACNISAFP--RFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFI 517
           +L+L    I              L  LDLS NK+   +           +++++L +N +
Sbjct: 173 HLNLQYNFIYDVKGQVVFAK---LKTLDLSSNKLA-FMGPEFQSA--AGVTWISLRNNKL 226

Query: 518 TKMKQI--PWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDV 575
             +++     +NL + DLR N           +LR     N +       ++  +   + 
Sbjct: 227 VLIEKALRFSQNLEHFDLRGNGFHC------GTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

Query: 576 LDLSNNRLNGTIPECIGNFSPSLSVLDLRN 605
            + +   L      C  +  P+     L  
Sbjct: 281 EECTVPTLGHYGAYCCEDL-PAPFADRLIA 309

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  109 bits (275), Expect = 3e-26
 Identities = 60/329 (18%), Positives = 109/329 (33%), Gaps = 32/329 (9%)

Query: 162 LDSLKNLSSSLTSLSLSDCILQGNFPINIFH-LPNPQMIRLSQN------PSLAGKFPAN 214
           +  +K   +      ++D  L+     ++     N + + LS N       +    F   
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK- 59

Query: 215 NWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMH 274
                +E L++S     E  D + +L  L  L L  +         L     +  LH  +
Sbjct: 60  -----LELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAAN 108

Query: 275 NNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD--IFNLTQVSFFDLSNNQLAG-PIPSH 331
           NN S  +    S       + L++N     + D      ++V + DL  N++        
Sbjct: 109 NNIS-RVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 332 GSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS-KSLQNIYLS 390
            +    L  + L  N     +   +     L+ + LS N+L+    EF S   +  I L 
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222

Query: 391 NNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFK 450
           NN+L   I  ++    NL    L  N F        F+K  +++ +        L    +
Sbjct: 223 NNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-KLTGQNE 280

Query: 451 IDSPFPKFSYLSLSACNISAFPRFLRTQD 479
            +   P   +     C     P   R   
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIA 309

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  107 bits (269), Expect = 2e-25
 Identities = 49/294 (16%), Positives = 102/294 (34%), Gaps = 32/294 (10%)

Query: 397 SIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS--LGNTFKIDSP 454
           +I             ++  ++        +      +K L LS N LS           P
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLA---P 56

Query: 455 FPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGK-DSLSYVNLS 513
           F K   L+LS+  +            L  LDL+ N         + E+    S+  ++ +
Sbjct: 57  FTKLELLNLSSNVLYETLDLESLS-TLRTLDLNNNY--------VQELLVGPSIETLHAA 107

Query: 514 HNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPP------SSLRVLLISNNQFTG-EIIHS 566
           +N I+++     +    + L +N +     +        S ++ L +  N+         
Sbjct: 108 NNNISRVSCSRGQGKKNIYLANNKITM---LRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 567 ICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLN 626
                 L+ L+L  N +   +   +      L  LDL +N+L   +   F  +  +  ++
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220

Query: 627 LNNNELGGAIPQSLVNCTKVEVLDIGNIKIN-DAFPYWLGNLPELQVLVLRSNK 679
           L NN+L   I ++L     +E  D+     +      +      +Q +  ++ K
Sbjct: 221 LRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  105 bits (264), Expect = 6e-25
 Identities = 40/272 (14%), Positives = 89/272 (32%), Gaps = 33/272 (12%)

Query: 573 LDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNEL 632
             +  ++++ L       +   + ++  LDL  N L+       A    L  LNL++N L
Sbjct: 12  YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 633 GGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKES 692
                  L + + +  LD+ N  + +     L   P ++ L   +N              
Sbjct: 71  YE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRV-----SCSR 118

Query: 693 FPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEI 752
               + + L+ N  +  L +      + ++ +     ++  +                  
Sbjct: 119 GQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFA--------------- 162

Query: 753 EMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESL 812
           E+         ++   N    ++   +     L+ L+LS N     +     + A +  +
Sbjct: 163 ELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWI 219

Query: 813 DLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLD 844
            L +N +   I K L    +L   +L  N   
Sbjct: 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 99.3 bits (248), Expect = 7e-23
 Identities = 62/358 (17%), Positives = 121/358 (33%), Gaps = 58/358 (16%)

Query: 86  LDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSG-FSRFRNLTHFSLSDSNI 144
             ++ S L      +       +++ L+LS N    S+IS+   + F  L   +LS + +
Sbjct: 15  EKVTDSSLK-QALAS-LRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVL 70

Query: 145 NCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQN 204
                               L++L S+L +L L++  +Q                 L   
Sbjct: 71  Y---------------ETLDLESL-STLRTLDLNNNYVQ----------------ELLVG 98

Query: 205 PSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNL 264
           PS+             E L  +  + S +  S    +    + L  ++         G  
Sbjct: 99  PSI-------------ETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCR 143

Query: 265 TQLTLLHLMHNNFSG-HIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQ 323
           +++  L L  N     +     ++   L +L+L  N  + ++       ++   DLS+N+
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNK 202

Query: 324 LAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLS-GHIDEFPSK 382
           LA  +         +  I L NN     I   L     LE+  L  N    G + +F SK
Sbjct: 203 LAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 383 SLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSH 440
           + +   ++   ++  +     E   +  L                 +LI L + +  H
Sbjct: 261 NQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 88.1 bits (219), Expect = 5e-19
 Identities = 51/236 (21%), Positives = 95/236 (40%), Gaps = 13/236 (5%)

Query: 611 SIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPEL 670
           +I       N  +   + ++ L  A+     +   V+ LD+    ++      L    +L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 671 QVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRN--VSADE 728
           ++L L SN  +    E    ES   LR LDL+ N     L    +E L+A  N       
Sbjct: 61  ELLNLSSNVLY----ETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC 116

Query: 729 GKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDG-EISQVIGKLHSLRL 787
            + +     Y  ++ +  L+  +       +    +D   N  D    +++     +L  
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDE---GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 788 LNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRL 843
           LNL +N     +   +   AKL++LDLSSN +A  +     S   ++ ++L +N+L
Sbjct: 174 LNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 71.6 bits (176), Expect = 2e-13
 Identities = 38/291 (13%), Positives = 89/291 (30%), Gaps = 38/291 (13%)

Query: 85  SLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNI 144
            L+LS       +     L  L  L+TL+L++N     E+  G     ++     +++NI
Sbjct: 62  LLNLS----SNVLYETLDLESLSTLRTLDLNNNYV--QELLVG----PSIETLHAANNNI 111

Query: 145 NCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQN 204
           + ++                  +      ++ L++  +     ++       Q + L  N
Sbjct: 112 S-RVS----------------CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

Query: 205 P--SLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLG 262
              ++     A +  + +E+L++      ++   +     L  L L  ++    +     
Sbjct: 155 EIDTVNFAELAASSDT-LEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQ 211

Query: 263 NLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNN 322
           +   +T + L +N     I  +L     L + DL  N F       F         ++  
Sbjct: 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 323 QLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLS 373
            +      +        L               L +      + L  +   
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCED-----LPAPFADRLIALGHHHHH 316

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  128 bits (324), Expect = 3e-32
 Identities = 69/377 (18%), Positives = 130/377 (34%), Gaps = 23/377 (6%)

Query: 187 PINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSI-GNLKLLGR 245
             N+ +      + +            +   +  + +    ++  +LP ++  + + +  
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 246 LMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEI 305
           L L   Q       +      +  L++  N      P    N+  LT L L  N      
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133

Query: 306 PDIF-NLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEY 364
             IF N  +++   +SNN L            +L  ++L++N  +  +   L   P L +
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI--PSLFH 190

Query: 365 VRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEP 424
             +S N LS         +++ +  S+N +   +   +   V LT L+L  NN +  A  
Sbjct: 191 ANVSYNLLS---TLAIPIAVEELDASHNSIN-VVRGPVN--VELTILKLQHNNLTDTAW- 243

Query: 425 YMFAKLIKLKYLYLSHNSLSL--GNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELS 482
                   L  + LS+N L     + F       +   L +S   + A   + +    L 
Sbjct: 244 --LLNYPGLVEVDLSYNELEKIMYHPF---VKMQRLERLYISNNRLVALNLYGQPIPTLK 298

Query: 483 YLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQG-P 541
            LDLS N +   +     +   D L  + L HN I  +K      L  L L  N      
Sbjct: 299 VLDLSHNHLL-HVERNQPQF--DRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNS 355

Query: 542 LPVPPSSLRVLLISNNQ 558
           L     ++    + +  
Sbjct: 356 LRALFRNVARPAVDDAD 372

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  125 bits (316), Expect = 4e-31
 Identities = 72/413 (17%), Positives = 143/413 (34%), Gaps = 54/413 (13%)

Query: 226 SETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSL 285
            +  +  +  ++    +   + +               L    ++   ++       + L
Sbjct: 6   RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 65

Query: 286 SNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLN 344
            +  Q+  L+L+           F     +    +  N +    P     +  L ++ L 
Sbjct: 66  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125

Query: 345 NNSFSGTIPSWLFS-LPLLEYVRLSDNQLSGHIDEF---PSKSLQNIYLSNNRLQGSIPS 400
            N  S ++P  +F   P L  + +S+N L   I++     + SLQN+ LS+NRL   +  
Sbjct: 126 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDL 182

Query: 401 SIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSP-FPKFS 459
           S+    +L    +  N  S        A  I ++ L  SHNS++      +  P   + +
Sbjct: 183 SLIP--SLFHANVSYNLLS------TLAIPIAVEELDASHNSIN-----VVRGPVNVELT 229

Query: 460 YLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITK 519
            L L   N++     L     L  +DLS N+        + +I       +         
Sbjct: 230 ILKLQHNNLTDTAWLLNYP-GLVEVDLSYNE--------LEKIMYHPFVKM--------- 271

Query: 520 MKQIPWKNLGYLDLRSNLLQG--PLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLD 577
                 + L  L + +N L        P  +L+VL +S+N     +  +      L+ L 
Sbjct: 272 ------QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324

Query: 578 LSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNN 630
           L +N +  T+   +     +L  L L +N  +          N  R    + +
Sbjct: 325 LDHNSIV-TLK--LSTH-HTLKNLTLSHNDWD-CNSLRALFRNVARPAVDDAD 372

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  112 bits (283), Expect = 6e-27
 Identities = 62/377 (16%), Positives = 137/377 (36%), Gaps = 39/377 (10%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSG-FSRFRNLTHFSLS 140
           + +  D+       ++        L + + +   ++     ++ +     FR +   +L+
Sbjct: 20  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLN 77

Query: 141 DSNINCKIPYEI------------SFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPI 188
           D  I  +I                 F  +  +     +N+   LT L L    L  + P 
Sbjct: 78  DLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV-PLLTVLVLERNDLS-SLPR 134

Query: 189 NIF-HLPNPQMIRLSQNP--SLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGR 245
            IF + P    + +S N    +          + ++ L +S    + +      +  L  
Sbjct: 135 GIFHNTPKLTTLSMSNNNLERIEDDTFQAT--TSLQNLQLSSNRLTHVDL--SLIPSLFH 190

Query: 246 LMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEI 305
             + Y+       ++L     +  L   HN+ +  +   +   V+LT L L  N+   + 
Sbjct: 191 ANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNN-LTDT 241

Query: 306 PDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYV 365
             + N   +   DLS N+L   +     ++Q L  + ++NN     +  +   +P L+ +
Sbjct: 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVL 300

Query: 366 RLSDNQLSG-HIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEP 424
            LS N L     ++     L+N+YL +N +  ++  S      L +L L  N++   +  
Sbjct: 301 DLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TLKLSTHH--TLKNLTLSHNDWDCNSLR 357

Query: 425 YMFAKLIKLKYLYLSHN 441
            +F  + +        +
Sbjct: 358 ALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  112 bits (283), Expect = 7e-27
 Identities = 54/322 (16%), Positives = 111/322 (34%), Gaps = 17/322 (5%)

Query: 525 WKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLN 584
           + ++       ++  G   +  ++ +++   N+         +     +++L+L++ ++ 
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82

Query: 585 GTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCT 644
             I      ++ ++  L +  N +    P  F     L  L L  N+L         N  
Sbjct: 83  -EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 141

Query: 645 KVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSIN 704
           K+  L + N  +             LQ L L SN+              P L   ++S N
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-----DLSLIPSLFHANVSYN 196

Query: 705 NFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKG---TEIEMQKILTVF 761
             S       +E L+A  N       +  +      +  ++ L+    T+          
Sbjct: 197 LLSTLAIPIAVEELDASHN------SINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGL 250

Query: 762 TTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAG 821
             +D S N  +  +     K+  L  L +S+N     +      +  L+ LDLS N++  
Sbjct: 251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL- 308

Query: 822 KIPKPLTSLTSLSVLNLSHNRL 843
            + +       L  L L HN +
Sbjct: 309 HVERNQPQFDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 93.2 bits (232), Expect = 3e-20
 Identities = 72/422 (17%), Positives = 134/422 (31%), Gaps = 83/422 (19%)

Query: 397 SIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFP 456
            I S++       D+ +D      +   +    L   K +   ++++             
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQD-VYFGFEDITLNNQKIVTFKNSTMR------------ 58

Query: 457 KFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNF 516
                 L A  + +F +       +  L+L++ +I+ +I ++       ++  + +  N 
Sbjct: 59  -----KLPAALLDSFRQ-------VELLNLNDLQIE-EIDTYAFA-YAHTIQKLYMGFNA 104

Query: 517 ITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVL 576
           I  +    ++N+                    L VL++  N  +        +   L  L
Sbjct: 105 IRYLPPHVFQNV------------------PLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146

Query: 577 DLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAI 636
            +SNN L   I +     + SL  L L +NRL             L   N++ N L    
Sbjct: 147 SMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS---LFHANVSYNLL---- 198

Query: 637 PQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKL 696
             +L     VE LD  +  IN           EL +L L+ N             ++P L
Sbjct: 199 -STLAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLT-DTAWLL---NYPGL 250

Query: 697 RILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQK 756
             +DLS N     +       +  +  +     +L  L                      
Sbjct: 251 VEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQP---------------- 293

Query: 757 ILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSS 816
            +     +D S N     + +   +   L  L L HN     +   L     L++L LS 
Sbjct: 294 -IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSH 348

Query: 817 NN 818
           N+
Sbjct: 349 ND 350

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  125 bits (315), Expect = 2e-31
 Identities = 54/280 (19%), Positives = 91/280 (32%), Gaps = 37/280 (13%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSD 141
             ++L+L    L    P     F L HLQ + +        E+     +F  L   +L+ 
Sbjct: 82  GRVALELRSVPLP-QFPD--QAFRLSHLQHMTIDAAGL--MELPDTMQQFAGLETLTLAR 136

Query: 142 SNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRL 201
           + +   +P  I+ L                L  LS+  C      P  +         + 
Sbjct: 137 NPLRA-LPASIASLN--------------RLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 202 SQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASL 261
             N               ++ L +  T    LP SI NL+ L  L +  S     +  ++
Sbjct: 182 LVN---------------LQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAI 225

Query: 262 GNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLS 320
            +L +L  L L       + P        L  L L   S    +P  I  LTQ+   DL 
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285

Query: 321 NNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLP 360
                  +PS  ++L    +I +  +  +        + P
Sbjct: 286 GCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  122 bits (308), Expect = 1e-30
 Identities = 46/328 (14%), Positives = 105/328 (32%), Gaps = 40/328 (12%)

Query: 132 RNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIF 191
               +     S         +S  +       +  + +    + +      +    +   
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKAT 71

Query: 192 HLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYS 251
                 ++  +  P                 L++      + PD    L  L  + +  +
Sbjct: 72  ----ADLLEDATQPGR-------------VALELRSVPLPQFPDQAFRLSHLQHMTIDAA 114

Query: 252 QFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD---- 307
             +  +P ++     L  L L  N     +P+S+++L +L  L + +     E+P+    
Sbjct: 115 GLME-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS 172

Query: 308 ------IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPL 361
                    L  +    L    +   +P+  + LQNL  +++ N+  S  +   +  LP 
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPK 230

Query: 362 LEYVRLSDNQLSGHIDEFPS-----KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSN 416
           LE + L        +  +P        L+ + L +     ++P  I  L  L  L L   
Sbjct: 231 LEELDLRGCT---ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL-RG 286

Query: 417 NFSGIAEPYMFAKLIKLKYLYLSHNSLS 444
             +    P + A+L     + +  +  +
Sbjct: 287 CVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  106 bits (268), Expect = 2e-25
 Identities = 54/380 (14%), Positives = 97/380 (25%), Gaps = 78/380 (20%)

Query: 260 SLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDL 319
              + +    L+   +         LS   +    D +            N         
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA---NSNNPQIETR 63

Query: 320 SNNQL-AGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDE 378
           +   L A       +     V + L +       P   F L                   
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRL------------------- 103

Query: 379 FPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYL 438
                LQ++ +    L   +P ++ +   L  L L  N    +  P   A L +L+ L +
Sbjct: 104 ---SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRAL--PASIASLNRLRELSI 157

Query: 439 SHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSW 498
                             + + L     +  A     +    L  L L    I   +P+ 
Sbjct: 158 RACP--------------ELTELPEPLASTDA-SGEHQGLVNLQSLRLEWTGIR-SLPAS 201

Query: 499 ISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPS-----SLRVLL 553
           I+                         +NL  L +R++ L     + P+      L  L 
Sbjct: 202 IAN-----------------------LQNLKSLKIRNSPLSA---LGPAIHHLPKLEELD 235

Query: 554 ISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIP 613
           +                  L  L L +     T+P  I   +  L  LDLR       +P
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT-QLEKLDLRGCVNLSRLP 294

Query: 614 GTFAESNWLRSLNLNNNELG 633
              A+      + +  +   
Sbjct: 295 SLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (265), Expect = 7e-25
 Identities = 49/334 (14%), Positives = 100/334 (29%), Gaps = 32/334 (9%)

Query: 526 KNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNG 585
                L  + +    P     S  +    ++            +     +   +   L  
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW-HSAWRQANSNNPQIETRTGRALK- 69

Query: 586 TIPECIGNF-SPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCT 644
              + + +   P    L+LR+  L    P      + L+ + ++   L   +P ++    
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA 127

Query: 645 KVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSN-------KFHGSVREFEPKESFPKLR 697
            +E L +    +  A P  + +L  L+ L +R+        +   S       +    L+
Sbjct: 128 GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186

Query: 698 ILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKI 757
            L L        LP     NL  ++++      L  LG   +                  
Sbjct: 187 SLRLEWTGIR-SLPASI-ANLQNLKSLKIRNSPLSALGPAIHH----------------- 227

Query: 758 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSN 817
           L     +D            + G    L+ L L        +P  +  L +LE LDL   
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

Query: 818 NVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGP 851
               ++P  +  L +  ++ +  +       H P
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRP 321

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (253), Expect = 2e-23
 Identities = 49/364 (13%), Positives = 103/364 (28%), Gaps = 53/364 (14%)

Query: 310 NLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSD 369
           + +         +    P     S+ Q       N    +    +   +  +      + 
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN-SNNPQIETRTGRAL 68

Query: 370 NQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAK 429
              +  +++        + L +  L    P   F L +L  + +D+     +  P    +
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMEL--PDTMQQ 125

Query: 430 LIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSEN 489
              L+ L L+ N L                          A P  + + + L  L +   
Sbjct: 126 FAGLETLTLARNPLR-------------------------ALPASIASLNRLRELSIRAC 160

Query: 490 KIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPS-- 547
               ++P     +     S  +               NL  L L    ++    +P S  
Sbjct: 161 PELTELPE---PLASTDASGEHQG-----------LVNLQSLRLEWTGIRS---LPASIA 203

Query: 548 ---SLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLR 604
              +L+ L I N+  +  +  +I  +  L+ LDL         P   G  +  L  L L+
Sbjct: 204 NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA-PLKRLILK 261

Query: 605 NNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWL 664
           +     ++P        L  L+L        +P  +       ++ +          +  
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRP 321

Query: 665 GNLP 668
              P
Sbjct: 322 VARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (251), Expect = 5e-23
 Identities = 56/336 (16%), Positives = 100/336 (29%), Gaps = 52/336 (15%)

Query: 102 SLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKI--PYEISFLKMST 159
              H    + L    +    + +               +D N           +  ++ T
Sbjct: 7   HHHHSSGRENLYFQGS----TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIET 62

Query: 160 VVLDSLKNL--------SSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKF 211
               +LK               +L L    L   FP   F L + Q + +     L  + 
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA-GLM-EL 119

Query: 212 PAN--NWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGN------ 263
           P     +   +E L ++      LP SI +L  L  L +     +  +P  L +      
Sbjct: 120 PDTMQQFAG-LETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 264 ---LTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLS 320
              L  L  L L        +P+S++NL  L  L + ++      P I +L ++   DL 
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237

Query: 321 NNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFP 380
                   P        L  + L + S   T+P  +  L                     
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL--------------------- 276

Query: 381 SKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSN 416
              L+ + L        +PS I +L     + +  +
Sbjct: 277 -TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 95.8 bits (239), Expect = 2e-21
 Identities = 52/330 (15%), Positives = 100/330 (30%), Gaps = 55/330 (16%)

Query: 233 LPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTL-------------------LHLM 273
                 +      L    S  + P    L    +                      +   
Sbjct: 4   SHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETR 63

Query: 274 HNNFSGHIPSSLSNLVQ--LTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPS 330
                      L +  Q     L+L S     + PD  F L+ +    +    L   +P 
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLME-LPD 121

Query: 331 HGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDN-----------QLSGHIDEF 379
              +   L  + L  N     +P+ + SL  L  + +                    +  
Sbjct: 122 TMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 380 PSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLS 439
              +LQ++ L    ++ S+P+SI  L NL  L++ ++  S +        L KL+ L L 
Sbjct: 181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL--GPAIHHLPKLEELDLR 237

Query: 440 HNSL------SLGNTFKIDSPFPKFSYLSLSACN-ISAFPRFLRTQDELSYLDLSENKID 492
             +         G              L L  C+ +   P  +    +L  LDL      
Sbjct: 238 GCTALRNYPPIFGG-------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

Query: 493 GQIPSWISEIGKDSLSYVNLSHNFITKMKQ 522
            ++PS I+++   +   + +  +   ++ Q
Sbjct: 291 SRLPSLIAQL--PANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.5 bits (233), Expect = 9e-21
 Identities = 51/368 (13%), Positives = 100/368 (27%), Gaps = 69/368 (18%)

Query: 481 LSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQ- 539
              L    +     +  +   + +    Y    + + +  +Q    N          L+ 
Sbjct: 14  RENLYFQGST---ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA 70

Query: 540 -----GPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNF 594
                     P      L + +     +       +  L  + +    L   +P+ +  F
Sbjct: 71  TADLLEDATQP--GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF 126

Query: 595 SPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNC---------TK 645
           +  L  L L  N L  ++P + A  N LR L++        +P+ L +            
Sbjct: 127 A-GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 646 VEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINN 705
           ++ L +    I  + P  + NL  L+ L +R++               PKL  LDL    
Sbjct: 185 LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIH---HLPKLEELDLRGCT 240

Query: 706 FSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTID 765
                P  F              G    L                             + 
Sbjct: 241 ALRNYPPIF--------------GGRAPL---------------------------KRLI 259

Query: 766 FSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPK 825
                    +   I +L  L  L+L       ++PS +  L     + +  +  A     
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

Query: 826 PLTSLTSL 833
              +  + 
Sbjct: 320 RPVARPAE 327

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  127 bits (321), Expect = 3e-31
 Identities = 72/371 (19%), Positives = 126/371 (33%), Gaps = 61/371 (16%)

Query: 318 DLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHID 377
                +    +P          L+ L  N           S P LE + L++N +S  ++
Sbjct: 17  LCHRKRFVA-VPEGIPT--ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVE 72

Query: 378 E--FPS-KSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAKLIKL 433
              F +  +L+ + L +NRL+  IP  +F  L NLT L +  N    +   YMF  L  L
Sbjct: 73  PGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNL 130

Query: 434 KYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDG 493
           K L +  N L                   +S        R     + L  L L +  +  
Sbjct: 131 KSLEVGDNDLV-----------------YIS-------HRAFSGLNSLEQLTLEKCNL-- 164

Query: 494 QIPSWISE---IGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLR 550
              + I          L  + L H  I  ++   +K L                    L+
Sbjct: 165 ---TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL------------------YRLK 203

Query: 551 VLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNG 610
           VL IS+  +   +  +    + L  L +++  L   +P         L  L+L  N ++ 
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIST 262

Query: 611 SIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPEL 670
                  E   L+ + L   +L    P +      + VL++   ++         ++  L
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322

Query: 671 QVLVLRSNKFH 681
           + L+L SN   
Sbjct: 323 ETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  126 bits (318), Expect = 9e-31
 Identities = 60/304 (19%), Positives = 112/304 (36%), Gaps = 15/304 (4%)

Query: 220 IEYLDVSETSFSELP-DSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFS 278
              LD+ +     L  D   +   L  L L  +      P +  NL  L  L L  N   
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 279 GHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQLAGPIPSHG-SRLQ 336
                  + L  LT LD+S N     +  +F +L  +   ++ +N L   I     S L 
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGLN 152

Query: 337 NLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS--KSLQNIYLSNNRL 394
           +L  + L   + +      L  L  L  +RL    ++   D        L+ + +S+   
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212

Query: 395 QGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSL--GNTFKID 452
             ++  +    +NLT L +   N + +        L+ L++L LS+N +S   G+     
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAV-PYLAVRHLVYLRFLNLSYNPISTIEGSML--- 268

Query: 453 SPFPKFSYLSLSACNISAFPRF-LRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVN 511
               +   + L    ++    +  R  + L  L++S N++   +   +      +L  + 
Sbjct: 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFH-SVGNLETLI 326

Query: 512 LSHN 515
           L  N
Sbjct: 327 LDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  123 bits (311), Expect = 7e-30
 Identities = 76/322 (23%), Positives = 129/322 (40%), Gaps = 34/322 (10%)

Query: 257 VPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVS 315
           VP  +   T+  LL L  N          ++   L  L+L+ N      P  F NL  + 
Sbjct: 26  VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83

Query: 316 FFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFS-LPLLEYVRLSDNQLSG 374
              L +N+L        + L NL  + ++ N     +  ++F  L  L+ + + DN L  
Sbjct: 84  TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV- 141

Query: 375 HIDE--FPS-KSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAKL 430
           +I    F    SL+ + L    L  SIP+     L  L  L+L   N + I   Y F +L
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAI-RDYSFKRL 199

Query: 431 IKLKYLYLSHNSLSLGNTFKIDSPFPKF------SYLSLSACNISAFPRF-LRTQDELSY 483
            +LK L +SH          +D+  P        + LS++ CN++A P   +R    L +
Sbjct: 200 YRLKVLEISHWPY-------LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252

Query: 484 LDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLG---YLDLRSNLL-- 538
           L+LS N I   I   +       L  + L    +  ++   ++ L     L++  N L  
Sbjct: 253 LNLSYNPIS-TIEGSMLH-ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310

Query: 539 -QGPLPVPPSSLRVLLISNNQF 559
            +  +     +L  L++ +N  
Sbjct: 311 LEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  117 bits (294), Expect = 8e-28
 Identities = 69/364 (18%), Positives = 128/364 (35%), Gaps = 56/364 (15%)

Query: 365 VRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAE 423
           V     +     +  P+   + + L  NR++ ++    F    +L +L+L+ N  S + E
Sbjct: 16  VLCHRKRFVAVPEGIPT-ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAV-E 72

Query: 424 PYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSY 483
           P  F  L  L+ L L  N L       I      F+ LS                  L+ 
Sbjct: 73  PGAFNNLFNLRTLGLRSNRLK-----LIPLGV--FTGLS-----------------NLTK 108

Query: 484 LDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLP 543
           LD+SENKI   +     ++   +L  + +  N +               +      G L 
Sbjct: 109 LDISENKIVILLDYMFQDLY--NLKSLEVGDNDLVY-------------ISHRAFSG-LN 152

Query: 544 VPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDL 603
               SL  L +     T     ++  +  L VL L +  +N  I +        L VL++
Sbjct: 153 ----SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEI 207

Query: 604 RNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYW 663
            +     ++         L SL++ +  L      ++ +   +  L++    I+      
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267

Query: 664 LGNLPELQVLVLRSNKFHGSVREFEPK--ESFPKLRILDLSINNFSGYLPERFLENLNAM 721
           L  L  LQ + L   +    +   EP        LR+L++S N  +  L E    ++  +
Sbjct: 268 LHELLRLQEIQLVGGQ----LAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNL 322

Query: 722 RNVS 725
             + 
Sbjct: 323 ETLI 326

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  115 bits (291), Expect = 2e-27
 Identities = 69/369 (18%), Positives = 121/369 (32%), Gaps = 73/369 (19%)

Query: 478 QDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNL 537
             +   +     +    +P  I          ++L  N I  + Q  + +          
Sbjct: 10  SAQDRAVLCHRKRFV-AVPEGIPT----ETRLLDLGKNRIKTLNQDEFASF--------- 55

Query: 538 LQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPS 597
                      L  L ++ N  +     +  ++  L  L L +NRL   IP  +     +
Sbjct: 56  ---------PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSN 105

Query: 598 LSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKIN 657
           L+ LD+  N++   +   F +   L+SL + +N+L     ++      +E L +    + 
Sbjct: 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165

Query: 658 DAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESF---PKLRILDLSINNFSGYLPERF 714
                 L +L  L VL LR    +          SF    +L++L++S   +   +    
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINAI-----RDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 715 LENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGE 774
           L  LN           L  L                                +       
Sbjct: 221 LYGLN-----------LTSL------------------------------SITHCNLTAV 239

Query: 775 ISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLS 834
               +  L  LR LNLS+N  +    S L  L +L+ + L    +A   P     L  L 
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299

Query: 835 VLNLSHNRL 843
           VLN+S N+L
Sbjct: 300 VLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  101 bits (253), Expect = 1e-22
 Identities = 72/348 (20%), Positives = 131/348 (37%), Gaps = 57/348 (16%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSG-FSRFRNLTHFSLS 140
               LDL  + +   +  +       HL+ L L+ N    S +  G F+   NL    L 
Sbjct: 33  ETRLLDLGKNRIK-TLNQD-EFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLR 88

Query: 141 DSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIF-HLPNPQMI 199
            + +               + L     LS+ LT L +S+  +       +F  L N + +
Sbjct: 89  SNRL-------------KLIPLGVFTGLSN-LTKLDISENKIV-ILLDYMFQDLYNLKSL 133

Query: 200 RLSQNP--SL-AGKFPANNWTSPIEYLDVSETSFSELPD-SIGNLKLLGRLMLGYSQFVG 255
            +  N    +    F  +   S +E L + + + + +P  ++ +L  L  L L +     
Sbjct: 134 EVGDNDLVYISHRAF--SGLNS-LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190

Query: 256 PVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVS 315
               S   L +L +L + H  +   +  +    + LT L ++            NLT V 
Sbjct: 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC----------NLTAVP 240

Query: 316 FFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFS-LPLLEYVRLSDNQLSG 374
           +  + +             L  L  + L+ N  S TI   +   L  L+ ++L   QL+ 
Sbjct: 241 YLAVRH-------------LVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAV 286

Query: 375 -HIDEFPS-KSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFS 419
                F     L+ + +S N+L  ++  S+F  + NL  L LDSN  +
Sbjct: 287 VEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 87.9 bits (218), Expect = 3e-18
 Identities = 49/285 (17%), Positives = 88/285 (30%), Gaps = 53/285 (18%)

Query: 568 CDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNL 627
           C      V      R    +PE          +LDL  NR+       FA    L  L L
Sbjct: 9   CSAQDRAV-LCHRKRFV-AVPE---GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELEL 63

Query: 628 NNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREF 687
           N N +    P +  N   +  L + + ++          L  L  L +  NK        
Sbjct: 64  NENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI----VIL 119

Query: 688 EPK--ESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVV 745
                +    L+ L++  N+   Y+  R    LN++  ++ ++  L  +           
Sbjct: 120 LDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSI----------- 167

Query: 746 TLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGN 805
                                 +             LH L +L L H +       S   
Sbjct: 168 ---------------------PTEALSH--------LHGLIVLRLRHLNINAIRDYSFKR 198

Query: 806 LAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHG 850
           L +L+ L++S       +        +L+ L+++H  L   +P+ 
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYL 242

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  126 bits (317), Expect = 2e-30
 Identities = 86/500 (17%), Positives = 174/500 (34%), Gaps = 40/500 (8%)

Query: 223 LDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIP 282
           +D S+     +P  +   +    L +  +       + + +L++L +L + HN       
Sbjct: 5   VDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI 62

Query: 283 SSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAG-PIPSHGSRLQNLVLI 341
           S      +L YLDLS N    +I        +   DLS N     PI      +  L  +
Sbjct: 63  SVFKFNQELEYLDLSHNK-LVKIS-CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120

Query: 342 RLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSS 401
            L+      +       +  L   ++       + ++   + LQ+    +  +       
Sbjct: 121 GLSTTHLEKSSVL---PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177

Query: 402 IFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYL 461
              +++++   + +   S I       K +          S+               + +
Sbjct: 178 FHFILDVSVKTVANLELSNI-------KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI 230

Query: 462 SLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMK 521
             +  +     + +     + Y  +S  K+ GQ+     +    SL  +++         
Sbjct: 231 ETTWNSFIRILQLVW-HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289

Query: 522 QIPW------KNLGYLDLRSNLLQG-PLPVP--PSSLRVLLISNNQFTGEIIHSICDIIA 572
                      N+   +   +  +   +  P   S    L  SNN  T  +  +   +  
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349

Query: 573 LDVLDLSNNRLNGTIPECIGNFS--PSLSVLDLRNNRLNGSIP-GTFAESNWLRSLNLNN 629
           L+ L L  N+L   + +     +   SL  LD+  N ++     G  + +  L SLN+++
Sbjct: 350 LETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408

Query: 630 NELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEP 689
           N L   I + L    +++VLD+ + KI  + P  +  L  LQ L + SN+   SV    P
Sbjct: 409 NILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SV----P 460

Query: 690 KESF---PKLRILDLSINNF 706
              F     L+ + L  N +
Sbjct: 461 DGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  114 bits (287), Expect = 9e-27
 Identities = 85/528 (16%), Positives = 172/528 (32%), Gaps = 52/528 (9%)

Query: 292 TYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGT 351
             +D S N       D+   T +   ++S N ++    S    L  L ++ +++N     
Sbjct: 3   FLVDRSKNGLIHVPKDLSQKTTI--LNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60

Query: 352 IPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE-LVNLTD 410
             S       LEY+ LS N+L   I   P+ +L+++ LS N          F  +  L  
Sbjct: 61  DISVFKFNQELEYLDLSHNKLV-KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119

Query: 411 LQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISA 470
           L L + +    +       ++ + +L +S   L LG T+            +  + +I  
Sbjct: 120 LGLSTTHLEKSS-------VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172

Query: 471 FPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGY 530
                        +    N     I   + +        +        K+  +   N+  
Sbjct: 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232

Query: 531 LDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPEC 590
                + ++    V  +++    ISN +  G++             D S   L       
Sbjct: 233 TWN--SFIRILQLVWHTTVWYFSISNVKLQGQLDFRD--------FDYSGTSLK------ 276

Query: 591 IGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLD 650
                 +LS+  + ++         +   + +   N   +             +    LD
Sbjct: 277 ------ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330

Query: 651 IGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYL 710
             N  + D      G+L EL+ L+L+ N+     +  E       L+ LD+S N+ S   
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390

Query: 711 PERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNG 770
            +       ++ +++     L                  T+   + +      +D  SN 
Sbjct: 391 KKGDCSWTKSLLSLNMSSNIL------------------TDTIFRCLPPRIKVLDLHSNK 432

Query: 771 FDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNN 818
               I + + KL +L+ LN++ N            L  L+ + L +N 
Sbjct: 433 IK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  109 bits (273), Expect = 6e-25
 Identities = 92/493 (18%), Positives = 168/493 (34%), Gaps = 65/493 (13%)

Query: 220 IEYLDVSETSFSELPDS-IGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFS 278
              L++S+   SEL  S I +L  L  L++ +++      +      +L  L L HN   
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 279 GHIPSSLSNLVQLTYLDLSSNSF--FGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQ 336
             I       V L +LDLS N+F       +  N++Q+ F  LS   L        + L 
Sbjct: 83  -KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 337 NL-VLIRLNNNSFSGTIPSWLFSLPL--LEYVRLSDNQLSGHIDEFPSKSLQNIYL---- 389
              VL+ L         P  L       L  V  ++ +    +D                
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199

Query: 390 ----SNNRLQGSIPSSIFELVNLTDLQLDSNNFSG--IAEPYMFAKLIKLKYLYLSHNSL 443
               +      SI + +     L++L L++   +               + Y  +S+  L
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259

Query: 444 ----SLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQ-DELSYLDLSENKIDGQIPSW 498
                  +     +     S   + +        ++      ++  + + +    ++   
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT--RMVHM 317

Query: 499 ISEIGKDSLSYVNLSHNFITKMKQ---IPWKNLGYLDLRSNLLQGPLPVPP------SSL 549
           +         +++ S+N +T            L  L L+ N L+  L           SL
Sbjct: 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE-LSKIAEMTTQMKSL 376

Query: 550 RVLLISNNQFTGEIIHSICD-IIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRL 608
           + L IS N  + +     C    +L  L++S+N L  TI  C     P + VLDL +N++
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC---LPPRIKVLDLHSNKI 433

Query: 609 NGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLP 668
             SIP    +   L+ LN+ +N+L  ++P                             L 
Sbjct: 434 K-SIPKQVVKLEALQELNVASNQLK-SVPDG-----------------------IFDRLT 468

Query: 669 ELQVLVLRSNKFH 681
            LQ + L +N + 
Sbjct: 469 SLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  107 bits (269), Expect = 1e-24
 Identities = 68/411 (16%), Positives = 143/411 (34%), Gaps = 45/411 (10%)

Query: 105 HLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDS 164
               L+ L+LSHN     +IS       NL H  LS +  +  +P    F  M       
Sbjct: 67  FNQELEYLDLSHNKL--VKIS--CHPTVNLKHLDLSFNAFDA-LPICKEFGNM------- 114

Query: 165 LKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSL---AGKFPANNWTSPIE 221
                S L  L LS   L+ +  + I HL   +++ +           +   +  T  + 
Sbjct: 115 -----SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLH 169

Query: 222 YLDVSETSFSELPDSIGN-------LKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMH 274
            +  +   F  + D             +   L      +   + A L    +L+ L L +
Sbjct: 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229

Query: 275 NNFSGHIPSSLSNLV---QLTYLDLSSNSFFGEIPDIF------NLTQVSFFDLSNNQLA 325
              + +    +  LV    + Y  +S+    G++          +L  +S   + ++   
Sbjct: 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289

Query: 326 GPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSK--S 383
            P         N+ +     +            +    ++  S+N L+  + E       
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349

Query: 384 LQNIYLSNNRLQGSIP--SSIF-ELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSH 440
           L+ + L  N+L+  +   + +  ++ +L  L +  N+ S   +    +    L  L +S 
Sbjct: 350 LETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408

Query: 441 NSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKI 491
           N L+      +    P+   L L +  I + P+ +   + L  L+++ N++
Sbjct: 409 NILTDTIFRCLP---PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQL 456

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  104 bits (262), Expect = 1e-23
 Identities = 95/554 (17%), Positives = 175/554 (31%), Gaps = 112/554 (20%)

Query: 96  NIPTNTSLFHLLHLQTLNLSHNDFDYSEISSG-FSRFRNLTHFSLSDSNINCKIPYEISF 154
           ++   T          LN+S N    SE+ +        L    +S + I   +      
Sbjct: 18  DLSQKT--------TILNISQNYI--SELWTSDILSLSKLRILIISHNRIQ-YLDIS--- 63

Query: 155 LKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPAN 214
                 V    +     L  L LS   L     I+     N + + LS N          
Sbjct: 64  ------VFKFNQE----LEYLDLSHNKLVK---ISCHPTVNLKHLDLSFNA--------- 101

Query: 215 NWTSPIEYLDVSETSFSELPDS--IGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTL-LH 271
                          F  LP     GN+  L  L L  +         + +L    + L 
Sbjct: 102 ---------------FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLV 146

Query: 272 LMHNNFSGHIPSSLSNLVQLT-YLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPS 330
           L         P  L +    + ++   +N  F  I D+   T     +L  + +   +  
Sbjct: 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT---VANLELSNIKCVLED 203

Query: 331 HGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLS 390
           +       +L +L  N           S   L  +  + N     +      ++    +S
Sbjct: 204 NKCSYFLSILAKLQTNPK--------LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255

Query: 391 NNRLQGSIPSSIFELVN-----LTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSL 445
           N +LQG +    F+        L+  Q+ S+ F    + Y++     +     + +   +
Sbjct: 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRM 314

Query: 446 GNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKD 505
                        S +S                    +LD S N +   +      +   
Sbjct: 315 -------VHMLCPSKIS-----------------PFLHLDFSNNLLTDTVFENCGHLT-- 348

Query: 506 SLSYVNLSHNFITKMKQIP-----WKNLGYLDLRSNLLQGPLPVP----PSSLRVLLISN 556
            L  + L  N + ++ +I       K+L  LD+  N +             SL  L +S+
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408

Query: 557 NQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTF 616
           N  T  I   +     + VLDL +N++  +IP+ +     +L  L++ +N+L     G F
Sbjct: 409 NILTDTIFRCLPP--RIKVLDLHSNKIK-SIPKQVVKL-EALQELNVASNQLKSVPDGIF 464

Query: 617 AESNWLRSLNLNNN 630
                L+ + L+ N
Sbjct: 465 DRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =   99 bits (249), Expect = 5e-22
 Identities = 78/466 (16%), Positives = 145/466 (31%), Gaps = 32/466 (6%)

Query: 381 SKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSH 440
           S+    + +S N +     S I  L  L  L +  N    + +  +F    +L+YL LSH
Sbjct: 20  SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSH 78

Query: 441 NSLSLGNTFKIDSPFPKFSYLSLSACNISAFPR--FLRTQDELSYLDLSENKIDGQIPSW 498
           N L          P     +L LS     A P         +L +L LS   ++      
Sbjct: 79  NKLV---KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134

Query: 499 ISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQ 558
           I+ +    +    L   +  K      ++     L               + V  ++N +
Sbjct: 135 IAHLNISKVLL-VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 559 FTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAE 618
            +        +  +  +  L+  + N  +     N   ++        R+   +  T   
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLN---NIETTWNSFIRILQLVWHTTVW 250

Query: 619 SNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSN 678
              + ++ L           S  +   + +  + +        Y       + +     +
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310

Query: 679 KFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEY 738
                +              LD S N  +         +L  +  +     +L+ L +  
Sbjct: 311 GT--RMVHMLCPSKISPFLHLDFSNNLLTD-TVFENCGHLTELETLILQMNQLKELSKI- 366

Query: 739 YQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGF-DGEISQVIGKLHSLRLLNLSHNHFTG 797
                         EM   +     +D S N     E         SL  LN+S N  T 
Sbjct: 367 -------------AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413

Query: 798 QIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRL 843
            I   L    +++ LDL SN +   IPK +  L +L  LN++ N+L
Sbjct: 414 TIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL 456

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 86.1 bits (213), Expect = 1e-17
 Identities = 56/324 (17%), Positives = 113/324 (34%), Gaps = 19/324 (5%)

Query: 87  DLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINC 146
           D +   LH   PTN     +L +    +++ +    +     ++                
Sbjct: 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPK 221

Query: 147 KIPYEISFLKMSTVVLDSLKNL--SSSLTSLSLSDCILQGNFPINIFHLPNPQM--IRLS 202
                ++ ++ +      +  L   +++   S+S+  LQG      F      +  + + 
Sbjct: 222 LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH 281

Query: 203 QNPSLAGKFPAN---NWTSPIEYLDVSETSFSELPD-SIGNLKLLGRLMLGYSQFVGPVP 258
           Q  S    FP +      S +   + + +    +       +     L    +     V 
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF 341

Query: 259 ASLGNLTQLTLLHLMHNNFS--GHIPSSLSNLVQLTYLDLSSNSF-FGEIPDIF-NLTQV 314
            + G+LT+L  L L  N       I    + +  L  LD+S NS  + E          +
Sbjct: 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401

Query: 315 SFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSG 374
              ++S+N L   I         + ++ L++N    +IP  +  L  L+ + ++ NQL  
Sbjct: 402 LSLNMSSNILTDTIF--RCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK- 457

Query: 375 HIDE--FPS-KSLQNIYLSNNRLQ 395
            + +  F    SLQ I+L  N   
Sbjct: 458 SVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 83.4 bits (206), Expect = 1e-16
 Identities = 67/378 (17%), Positives = 129/378 (34%), Gaps = 40/378 (10%)

Query: 484 LDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQ---IPWKNLGYLDLRSNLLQG 540
           +D S+N +   +P  +S       + +N+S N+I+++     +    L  L +  N +Q 
Sbjct: 5   VDRSKNGLI-HVPKDLS----QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY 59

Query: 541 PLPVPPS------SLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNF 594
              +  S       L  L +S+N+      H     + L  LDLS N  +  +P C   F
Sbjct: 60  ---LDISVFKFNQELEYLDLSHNKLVKISCHPT---VNLKHLDLSFNAFD-ALPIC-KEF 111

Query: 595 S--PSLSVLDLRNNRLNGSIPGTFAESNWLR-SLNLNNNELGGAIPQSLVNC--TKVEVL 649
                L  L L    L  S     A  N  +  L L         P+ L +     + ++
Sbjct: 112 GNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171

Query: 650 DIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPK----ESFPKLRILDLSINN 705
              N + +      +  +  L++  ++          F       ++ PKL  L L+   
Sbjct: 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE 231

Query: 706 FSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTID 765
            +     R L+ +            ++  G+  ++D                L   +   
Sbjct: 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS---------LKALSIHQ 282

Query: 766 FSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPK 825
             S+ F    S +     ++ + N + +            ++    LD S+N +   + +
Sbjct: 283 VVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE 342

Query: 826 PLTSLTSLSVLNLSHNRL 843
               LT L  L L  N+L
Sbjct: 343 NCGHLTELETLILQMNQL 360

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  125 bits (316), Expect = 4e-30
 Identities = 69/377 (18%), Positives = 130/377 (34%), Gaps = 23/377 (6%)

Query: 187 PINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSI-GNLKLLGR 245
             N+ +      + +            +   +  + +    ++  +LP ++  + + +  
Sbjct: 20  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79

Query: 246 LMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEI 305
           L L   Q       +      +  L++  N      P    N+  LT L L  N      
Sbjct: 80  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139

Query: 306 PDIF-NLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEY 364
             IF N  +++   +SNN L            +L  ++L++N  +  +   L   P L +
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI--PSLFH 196

Query: 365 VRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEP 424
             +S N LS         +++ +  S+N +   +   +   V LT L+L  NN +  A  
Sbjct: 197 ANVSYNLLS---TLAIPIAVEELDASHNSIN-VVRGPVN--VELTILKLQHNNLTDTA-- 248

Query: 425 YMFAKLIKLKYLYLSHNSLSL--GNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELS 482
                   L  + LS+N L     + F       +   L +S   + A   + +    L 
Sbjct: 249 -WLLNYPGLVEVDLSYNELEKIMYHPF---VKMQRLERLYISNNRLVALNLYGQPIPTLK 304

Query: 483 YLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQG-P 541
            LDLS N +   +     +   D L  + L HN I  +K      L  L L  N      
Sbjct: 305 VLDLSHNHLL-HVERNQPQF--DRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNS 361

Query: 542 LPVPPSSLRVLLISNNQ 558
           L     ++    + +  
Sbjct: 362 LRALFRNVARPAVDDAD 378

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  124 bits (312), Expect = 1e-29
 Identities = 70/420 (16%), Positives = 150/420 (35%), Gaps = 51/420 (12%)

Query: 229 SFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNL 288
            +  +  ++    +   + +               L    ++   ++       + L + 
Sbjct: 15  EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 74

Query: 289 VQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNS 347
            Q+  L+L+           F     +    +  N +    P     +  L ++ L  N 
Sbjct: 75  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 134

Query: 348 FSGTIPSWLFS-LPLLEYVRLSDNQLSGHIDE---FPSKSLQNIYLSNNRLQGSIPSSIF 403
            S ++P  +F   P L  + +S+N L   I++     + SLQN+ LS+NRL   +  S+ 
Sbjct: 135 LS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI 191

Query: 404 ELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSP-FPKFSYLS 462
              +L    +  N  S        A  I ++ L  SHNS++      +  P   + + L 
Sbjct: 192 P--SLFHANVSYNLLS------TLAIPIAVEELDASHNSIN-----VVRGPVNVELTILK 238

Query: 463 LSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQ 522
           L   N++     L     L  +DLS N+++ +I           L  + +S+N +  +  
Sbjct: 239 LQHNNLTDTAWLLNYP-GLVEVDLSYNELE-KIMYHPFV-KMQRLERLYISNNRLVAL-N 294

Query: 523 IPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNR 582
           +  + +                   +L+VL +S+N     +  +      L+ L L +N 
Sbjct: 295 LYGQPI------------------PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335

Query: 583 LNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVN 642
           +  T+   +     +L  L L +N  + +          +    +++ +    I   L +
Sbjct: 336 IV-TLK--LSTH-HTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEH 389

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 96.9 bits (241), Expect = 7e-21
 Identities = 53/318 (16%), Positives = 99/318 (31%), Gaps = 57/318 (17%)

Query: 526 KNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNG 585
            ++       ++  G   +  ++ +++   N+         +     +++L+L++ ++  
Sbjct: 30  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE- 88

Query: 586 TIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTK 645
            I      ++ ++  L +  N +    P  F     L  L L  N+L         N  K
Sbjct: 89  EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148

Query: 646 VEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINN 705
           +  L + N  +             LQ L L SN+              P L   ++S N 
Sbjct: 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-----DLSLIPSLFHANVSYNL 203

Query: 706 FSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTID 765
            S       +E L+A  N       +  +                               
Sbjct: 204 LSTLAIPIAVEELDASHN------SINVVRG----------------------------- 228

Query: 766 FSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPK 825
                              L +L L HN+ T    + L N   L  +DLS N +   +  
Sbjct: 229 --------------PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH 272

Query: 826 PLTSLTSLSVLNLSHNRL 843
           P   +  L  L +S+NRL
Sbjct: 273 PFVKMQRLERLYISNNRL 290

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.3 bits (172), Expect = 1e-12
 Identities = 50/272 (18%), Positives = 97/272 (35%), Gaps = 41/272 (15%)

Query: 580 NNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNW-----LRSLNLNNNELGG 634
              +    PE     S         +  ++      +           + +   N+ +  
Sbjct: 6   RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK 65

Query: 635 AIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPK--ES 692
                L +  +VE+L++ +++I +   Y       +Q L +  N     +R   P   ++
Sbjct: 66  LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA----IRYLPPHVFQN 121

Query: 693 FPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEI 752
            P L +L L  N+ S  LP     N   +  +S     L  + ++ +Q            
Sbjct: 122 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA----------- 169

Query: 753 EMQKILTVFTTIDFSSNGFDGEISQV-IGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLES 811
                 T    +  SSN     ++ V +  + SL   N+S+N  +     +L     +E 
Sbjct: 170 -----TTSLQNLQLSSN----RLTHVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEE 215

Query: 812 LDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRL 843
           LD S N++   +  P+     L++L L HN L
Sbjct: 216 LDASHNSIN-VVRGPV--NVELTILKLQHNNL 244

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  120 bits (303), Expect = 7e-30
 Identities = 62/289 (21%), Positives = 102/289 (35%), Gaps = 29/289 (10%)

Query: 265 TQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQ 323
              TLL L +N+ S         L  L  L L +N         F  L ++    +S N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 324 LAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFS-LPLLEYVRLSDNQLSGHIDE---F 379
           L   IP +     +LV +R+++N     +P  +FS L  +  + +  N L     E   F
Sbjct: 114 LVE-IPPNL--PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 380 PSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLS 439
               L  + +S  +L   IP  + E   L +L LD N    I E     +  KL  L L 
Sbjct: 170 DGLKLNYLRISEAKLT-GIPKDLPE--TLNELHLDHNKIQAI-ELEDLLRYSKLYRLGLG 225

Query: 440 HNSLSL--GNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKI----DG 493
           HN + +    +    S  P    L L    +S  P  L     L  + L  N I      
Sbjct: 226 HNQIRMIENGSL---SFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVN 282

Query: 494 QIPSWISEIGKDSLSYVNLSHNFITKMKQIPW------KNLGYLDLRSN 536
                   + +   + ++L +N +    ++         +   +   + 
Sbjct: 283 DFCPVGFGVKRAYYNGISLFNNPVP-YWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  103 bits (258), Expect = 5e-24
 Identities = 64/330 (19%), Positives = 116/330 (35%), Gaps = 45/330 (13%)

Query: 362 LEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSG 420
           L  V+ SD  L   + +  S     + L NN +   +    F+ L +L  L L +N  S 
Sbjct: 35  LRVVQCSDLGLK-AVPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISK 92

Query: 421 IAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSP-FPKFSYLSLSACNISAFPRF-LRTQ 478
           I     F+ L KL+ LY+S N L      +I          L +    I   P+      
Sbjct: 93  I-HEKAFSPLRKLQKLYISKNHLV-----EIPPNLPSSLVELRIHDNRIRKVPKGVFSGL 146

Query: 479 DELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLL 538
             ++ +++  N ++    S       D L                    L YL +    L
Sbjct: 147 RNMNCIEMGGNPLE---NSGFEPGAFDGL-------------------KLNYLRISEAKL 184

Query: 539 QGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSL 598
            G     P +L  L + +N+     +  +     L  L L +N++   I     +F P+L
Sbjct: 185 TGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTL 243

Query: 599 SVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQS-------LVNCTKVEVLDI 651
             L L NN+L+  +P    +   L+ + L+ N +   +  +        V       + +
Sbjct: 244 RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI-TKVGVNDFCPVGFGVKRAYYNGISL 301

Query: 652 GN--IKINDAFPYWLGNLPELQVLVLRSNK 679
            N  +   +  P     + +   +   + K
Sbjct: 302 FNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 82.8 bits (205), Expect = 3e-17
 Identities = 73/364 (20%), Positives = 114/364 (31%), Gaps = 92/364 (25%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSG-FSRFRNLTHFSLS 140
           +   LDL  + +   +  +     L HL  L L +N    S+I    FS  R L    +S
Sbjct: 55  DTTLLDLQNNDIS-ELRKD-DFKGLQHLYALVLVNNKI--SKIHEKAFSPLRKLQKLYIS 110

Query: 141 DSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIF-HLPNPQMI 199
            +++  +IP                 NL SSL  L + D  ++   P  +F  L N   I
Sbjct: 111 KNHLV-EIP----------------PNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCI 152

Query: 200 RLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPA 259
            +  N              P+E       +F         LKL   L +  ++  G +P 
Sbjct: 153 EMGGN--------------PLENSGFEPGAFD-------GLKLN-YLRISEAKLTG-IPK 189

Query: 260 SLGNLTQLTLLHLMHNNFSGHIPS-SLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFD 318
            L     L  LHL HN     I    L    +L  L L  N           +  +    
Sbjct: 190 DL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHN----------QIRMIENGS 236

Query: 319 LSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDE 378
           LS              L  L  + L+NN  S  +P+ L  L LL+ V L  N ++    +
Sbjct: 237 LSF-------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT----K 278

Query: 379 FPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIA-EPYMFAKLIKLKYLY 437
                   +                       + L +N       +P  F  +     + 
Sbjct: 279 VGVNDFCPVGFGVK------------RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326

Query: 438 LSHN 441
             + 
Sbjct: 327 FGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.8 bits (200), Expect = 2e-16
 Identities = 55/307 (17%), Positives = 102/307 (33%), Gaps = 62/307 (20%)

Query: 546 PSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRN 605
                +L + NN  +         +  L  L L NN+++  I E   +    L  L +  
Sbjct: 53  SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISK 111

Query: 606 NRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAF--PYW 663
           N L    P   +    L  L +++N +             +  +++G   + ++   P  
Sbjct: 112 NHLVEIPPNLPSS---LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168

Query: 664 LGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRN 723
              L +L  L +   K  G      PK+    L  L L  N     +    L   +    
Sbjct: 169 FDGL-KLNYLRISEAKLTGI-----PKDLPETLNELHLDHNKIQ-AIELEDLLRYS---- 217

Query: 724 VSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLH 783
                 KL  LG           L   +I           I+  +             L 
Sbjct: 218 ------KLYRLG-----------LGHNQI---------RMIE--NGSLSF--------LP 241

Query: 784 SLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIP-------KPLTSLTSLSVL 836
           +LR L+L +N  + ++P+ L +L  L+ + L +NN+  K+                 + +
Sbjct: 242 TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGI 299

Query: 837 NLSHNRL 843
           +L +N +
Sbjct: 300 SLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 79.7 bits (197), Expect = 4e-16
 Identities = 55/281 (19%), Positives = 98/281 (34%), Gaps = 49/281 (17%)

Query: 573 LDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNEL 632
           L V+  S+  L   +P+     SP  ++LDL+NN ++      F     L +L L NN++
Sbjct: 35  LRVVQCSDLGLK-AVPK---EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 633 GGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKES 692
                ++     K++ L I    + +  P        L  L +  N+    V    PK  
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLVEIPP---NLPSSLVELRIHDNRIR-KV----PKGV 142

Query: 693 F---PKLRILDLSINNF-SGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLK 748
           F     +  +++  N   +        + L            L YL            + 
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-----------LNYL-----------RIS 180

Query: 749 GTEIEM--QKILTVFTTIDFSSNGFDGEISQV----IGKLHSLRLLNLSHNHFTGQIPSS 802
             ++    + +      +    N    +I  +    + +   L  L L HN        S
Sbjct: 181 EAKLTGIPKDLPETLNELHLDHN----KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236

Query: 803 LGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRL 843
           L  L  L  L L +N ++ ++P  L  L  L V+ L  N +
Sbjct: 237 LSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.0 bits (172), Expect = 6e-13
 Identities = 68/357 (19%), Positives = 125/357 (35%), Gaps = 79/357 (22%)

Query: 480 ELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLG---YLDLRSN 536
            L  +  S+  +   +P  IS       + ++L +N I+++++  +K L     L L +N
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISP----DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN 88

Query: 537 LLQGPLPVPP------SSLRVLLISNNQFTGEIIHSICDII--ALDVLDLSNNRLNGTIP 588
            +     +          L+ L IS N      +  I   +  +L  L + +NR+   +P
Sbjct: 89  KISK---IHEKAFSPLRKLQKLYISKNH-----LVEIPPNLPSSLVELRIHDNRIR-KVP 139

Query: 589 ECIGNFS--PSLSVLDLRNNRLNGSI--PGTFAESNWLRSLNLNNNELGGAIPQSLVNCT 644
           +  G FS   +++ +++  N L  S   PG F     L  L ++  +L   IP+ L    
Sbjct: 140 K--GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLT-GIPKDLP--E 193

Query: 645 KVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPK--ESFPKLRILDLS 702
            +  L + + KI       L    +L  L L  N+    +R  E       P LR L L 
Sbjct: 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ----IRMIENGSLSFLPTLRELHLD 249

Query: 703 INNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFT 762
            N  S  +P     +L  ++ V      +  +G                           
Sbjct: 250 NNKLS-RVPAGL-PDLKLLQVVYLHTNNITKVGVN------------------------- 282

Query: 763 TIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQI--PSSLGNLAKLESLDLSSN 817
             DF   GF         K      ++L +N        P++   +    ++   + 
Sbjct: 283 --DFCPVGFGV-------KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  124 bits (313), Expect = 8e-30
 Identities = 98/476 (20%), Positives = 167/476 (35%), Gaps = 38/476 (7%)

Query: 257 VPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVS 315
           VP       +   L L  N+ S      +S L +L  L LS N        +F     + 
Sbjct: 46  VPK--DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLE 103

Query: 316 FFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFS-LPLLEYVRLSDNQL-S 373
           + D+S+N+L   I      + +L  + L+ N F        F  L  L ++ LS  +   
Sbjct: 104 YLDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160

Query: 374 GHIDEFPSKSLQNIYLSNNRLQGS-IPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIK 432
             +       L  I L           +   ++ N T L L  +  S  +   +   +  
Sbjct: 161 LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ-VNMSVNA 219

Query: 433 LKYLYLSHNSLSLGNTFKIDSPF------PKFSYLSLSACNISAFPRFLRTQ----DELS 482
           L +L LS+  L+  N  ++ +        P    ++L     +        Q      + 
Sbjct: 220 LGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279

Query: 483 YLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPW------KNLGYLDLRSN 536
           YL++    I  +I        + +L  + + H                   +    L  +
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339

Query: 537 LLQGPLPVP---PSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGN 593
                  V    PSS   L  + N FT  +      +  L  L L  N L     +    
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALM 398

Query: 594 FS--PSLSVLDLRNNRLN-GSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLD 650
                SL  LD+  N LN  +   T A +  +  LNL++N L G++ + L    KV+VLD
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLD 456

Query: 651 IGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNF 706
           + N +I  + P  + +L  LQ L + SN+           +    L+ + L  N +
Sbjct: 457 LHNNRI-MSIPKDVTHLQALQELNVASNQLKSVPDGVF--DRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  108 bits (271), Expect = 1e-24
 Identities = 93/551 (16%), Positives = 181/551 (32%), Gaps = 96/551 (17%)

Query: 290 QLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFS 349
             + +D S+ +      D+   T+     LS N ++       S L  L ++RL++N   
Sbjct: 32  LESMVDYSNRNLTHVPKDLPPRTKA--LSLSQNSISELRMPDISFLSELRVLRLSHNRIR 89

Query: 350 GTIPSWLF-SLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE-LVN 407
            ++   +F     LEY+ +S N+L  +I   P  SL+++ LS N          F  L  
Sbjct: 90  -SLDFHVFLFNQDLEYLDVSHNRLQ-NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTK 147

Query: 408 LTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACN 467
           LT L L +  F  +    +    + L  + L   S  +          P  + L L    
Sbjct: 148 LTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205

Query: 468 ISAFPRFLRT-QDELSYLDLSENKID----GQIPSWISEIGKDS------LSYVNLSHNF 516
            S F   +    + L +L LS  K++     ++ +++SE+ +        L ++  +   
Sbjct: 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265

Query: 517 ITKMKQIPW-KNLGYLDLRSNLLQGPLP--------VPPSSLRVLLISNNQFTGEIIHSI 567
             K+ Q  W + + YL++ +  +   +             SL +  + N  F        
Sbjct: 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325

Query: 568 CDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNL 627
                +++  LS +        C  + S S + L+   N    S+    +    L++L L
Sbjct: 326 SVFAEMNIKMLSISDTPFIHMVCPPSPS-SFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384

Query: 628 NNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREF 687
             N L     ++                          N+  L+ L +  N  +    + 
Sbjct: 385 QRNGL-----KNF-----------------FKVALMTKNMSSLETLDVSLNSLNSHAYDR 422

Query: 688 EPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTL 747
                   + +L+LS N  +G +       +                             
Sbjct: 423 -TCAWAESILVLNLSSNMLTGSVFRCLPPKV----------------------------- 452

Query: 748 KGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLA 807
                           +D  +N     I + +  L +L+ LN++ N            L 
Sbjct: 453 --------------KVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLT 497

Query: 808 KLESLDLSSNN 818
            L+ + L  N 
Sbjct: 498 SLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  106 bits (265), Expect = 7e-24
 Identities = 75/404 (18%), Positives = 143/404 (35%), Gaps = 56/404 (13%)

Query: 92  WLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYE 151
            +  N   N S   +  L+ L+LS NDFD   +   F     LT   LS +         
Sbjct: 106 DVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP 165

Query: 152 ISFLKMSTVVLD------------SLKNLSSSLTSLSLSDCILQGN-FPINIFHLPNPQM 198
           ++ L +S ++LD            SL+  ++++  L      L      +++  L + Q+
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225

Query: 199 IRLSQNPSLAGKFP-------------------------------ANNWTSPIEYLDVSE 227
             +  N     +                                    W  P+EYL++  
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285

Query: 228 TSFSELPD------SIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHI 281
            + +E  D      S   LK L    +    F+    A      ++ +  L  ++     
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345

Query: 282 PSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQLA--GPIPSHGSRLQNL 338
                +    T+L+ + N F   +      L ++    L  N L     +      + +L
Sbjct: 346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL 405

Query: 339 VLIRLNNNSFSGTIPSWLFSLPL-LEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGS 397
             + ++ NS +        +    +  + LS N L+G +       ++ + L NNR+  S
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-S 464

Query: 398 IPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHN 441
           IP  +  L  L +L + SN    + +  +F +L  L+Y++L  N
Sbjct: 465 IPKDVTHLQALQELNVASNQLKSVPDG-VFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 94.6 bits (235), Expect = 4e-20
 Identities = 61/411 (14%), Positives = 120/411 (29%), Gaps = 47/411 (11%)

Query: 105 HLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDS 164
               L+ L++SHN      IS       +L H  LS ++ +  +P    F  +       
Sbjct: 98  FNQDLEYLDVSHNRL--QNIS--CCPMASLRHLDLSFNDFDV-LPVCKEFGNL------- 145

Query: 165 LKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLD 224
                + LT L LS    +    + + HL    ++    +  + G    +        L 
Sbjct: 146 -----TKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH 200

Query: 225 VSETSFSELPDSI-GNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPS 283
           +     S     +  ++  LG L L   +        L              N +     
Sbjct: 201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260

Query: 284 SLSN----------LVQLTYLDLSSNSFFGEIPDIF------NLTQVSFFDLSNNQLAGP 327
           +                + YL++ + +    I           L  +    + N      
Sbjct: 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFS 320

Query: 328 IPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLS----GHIDEFPSKS 383
             +  S    + +  L+ +           S     ++  + N  +              
Sbjct: 321 KEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLK--R 378

Query: 384 LQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSN---NFSGIAEPYMFAKLIKLKYLYLSH 440
           LQ + L  N L+ +         N++ L+       + +  A     A    +  L LS 
Sbjct: 379 LQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437

Query: 441 NSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKI 491
           N L+           PK   L L    I + P+ +     L  L+++ N++
Sbjct: 438 NMLTGSVF---RCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 82.6 bits (204), Expect = 2e-16
 Identities = 88/479 (18%), Positives = 157/479 (32%), Gaps = 109/479 (22%)

Query: 383 SLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHN 441
             + + LS N +   +       L  L  L+L  N    + + ++F     L+YL +SHN
Sbjct: 53  RTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHN 110

Query: 442 SLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISE 501
            L                  ++S C +++          L +LDLS N  D  +P    E
Sbjct: 111 RLQ-----------------NISCCPMAS----------LRHLDLSFNDFD-VLPV-CKE 141

Query: 502 IGK-DSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLP-VPPSSLRVLLISNNQF 559
            G    L+++ LS     ++  +P  +L    +  +L+   +      SL++   +    
Sbjct: 142 FGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH- 200

Query: 560 TGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNG----SIPGT 615
                           L    N L         N    L + +++ N  N     +    
Sbjct: 201 ----------------LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE 244

Query: 616 FAESNWLRSLNLNNNELGGAIP---QSLVNCTKVEVLDIGNIKIN-----DAFPYWLGNL 667
                 L ++ L + E                 VE L+I N+ I      + F Y    L
Sbjct: 245 LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL 304

Query: 668 PELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSAD 727
             L +  +++  F     +      F ++ I  LSI++                      
Sbjct: 305 KSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISD---------------------- 340

Query: 728 EGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRL 787
                                   +      + FT ++F+ N F   + Q    L  L+ 
Sbjct: 341 -------------------TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQT 381

Query: 788 LNLSHNHFT--GQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSL-TSLSVLNLSHNRL 843
           L L  N      ++     N++ LE+LD+S N++         +   S+ VLNLS N L
Sbjct: 382 LILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.8 bits (163), Expect = 2e-11
 Identities = 62/349 (17%), Positives = 112/349 (32%), Gaps = 24/349 (6%)

Query: 505 DSLSYVNLSHNFITKM-KQIPWKNLGYLDLRSNLLQGPLPVPP------SSLRVLLISNN 557
           +  S V+ S+  +T + K +P      L L  N +     +        S LRVL +S+N
Sbjct: 31  ELESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSISE---LRMPDISFLSELRVLRLSHN 86

Query: 558 QFTGEIIHSICD-IIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIP--G 614
           +    +   +      L+ LD+S+NRL   I       + SL  LDL  N  +  +P   
Sbjct: 87  RIR-SLDFHVFLFNQDLEYLDVSHNRL-QNIS--CCPMA-SLRHLDLSFNDFD-VLPVCK 140

Query: 615 TFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLV 674
            F     L  L L+  +        + +     +L   ++           +L      V
Sbjct: 141 EFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCIL--LDLVSYHIKGGETESLQIPNTTV 198

Query: 675 LRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYL 734
           L       S+   +   S   L  L LS    +     + L    +          +   
Sbjct: 199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN-DENCQRLMTFLSELTRGPTLLNVTLQ 257

Query: 735 GEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNH 794
             E      V   +       + L     +  +      E +     L SL + ++ +  
Sbjct: 258 HIETTWKCSVKLFQFFWPRPVEYLN-IYNLTITERIDREEFTYSETALKSLMIEHVKNQV 316

Query: 795 FTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRL 843
           F     +     A++    LS ++          S +S + LN + N  
Sbjct: 317 FLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 65.7 bits (160), Expect = 4e-11
 Identities = 59/367 (16%), Positives = 119/367 (32%), Gaps = 39/367 (10%)

Query: 494 QIPSWISEIGKDSLSYVNLSHNFITKMKQ---IPWKNLGYLDLRSNLLQGPLPVPPS--- 547
            +P  +          ++LS N I++++         L  L L  N ++    +      
Sbjct: 45  HVPKDLP----PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS---LDFHVFL 97

Query: 548 ---SLRVLLISNNQFTGEIIHSI-CDIIA-LDVLDLSNNRLNGTIPECIGNFS--PSLSV 600
               L  L +S+N+     + +I C  +A L  LDLS N  +  +P C   F     L+ 
Sbjct: 98  FNQDLEYLDVSHNR-----LQNISCCPMASLRHLDLSFNDFD-VLPVC-KEFGNLTKLTF 150

Query: 601 LDLRNNRLNGSIPGTFAESNWLRS--LNLNNNELGGAIPQSL--VNCTKVEVLDIGNIKI 656
           L L   +    +         L    L+L +  + G   +SL   N T + ++   N   
Sbjct: 151 LGLSAAKFR-QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLF 209

Query: 657 NDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLE 716
           +      +  L  LQ+  ++ N  +         E      +L++++ +         ++
Sbjct: 210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK-CSVK 268

Query: 717 NLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEIS 776
                     +   +  L      D    T   T ++   I          +  F     
Sbjct: 269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIE------HVKNQVFLFSKE 322

Query: 777 QVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVL 836
            +      + +  LS +           + +    L+ + N     + +  ++L  L  L
Sbjct: 323 ALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL 382

Query: 837 NLSHNRL 843
            L  N L
Sbjct: 383 ILQRNGL 389

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 14/169 (8%)

Query: 109 LQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNL 168
              LN + N F    +  G S  + L    L  + +               ++  ++ +L
Sbjct: 355 FTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGL--------KNFFKVALMTKNMSSL 405

Query: 169 SSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSET 228
                 +SL+  +    +        +  ++ LS N      F        ++ LD+   
Sbjct: 406 E--TLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR--CLPPKVKVLDLHNN 460

Query: 229 SFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNF 277
               +P  + +L+ L  L +  +Q           LT L  + L  N +
Sbjct: 461 RIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  122 bits (308), Expect = 1e-29
 Identities = 77/402 (19%), Positives = 148/402 (36%), Gaps = 41/402 (10%)

Query: 304 EIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLF-SLPLL 362
           ++P++         DLS N +A    +  SRLQ+L  +++   +    I +  F  L  L
Sbjct: 24  QVPELPAHVNY--VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81

Query: 363 EYVRLSDNQLS----GHIDEFPSKSLQNIYLSNNRLQGS-IPSSIFE-LVNLTDLQLDSN 416
             ++L  NQ      G  +   +  L+ + L+   L G+ +  + F+ L +L  L L  N
Sbjct: 82  IILKLDYNQFLQLETGAFNGLAN--LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 417 NFSGIAEPYMFAKLIKLKYLYLSHNSL---------SLGNTFKIDSPFPKFSYLSLSACN 467
           N   I     F  + +   L L+ N +         +              +   ++   
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 468 ISAFPRF-LRTQDELSYLDLSENKIDGQIPSWI-SEIGKDSLSYVNLSHNFITKMKQIPW 525
           +             ++ LDLS N     +       I    +  + LS+++         
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN-MGSSFGH 258

Query: 526 KNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICD-IIALDVLDLSNNRLN 584
            N    D  +   +G   +  S ++   +S ++    ++ S+      L+ L L+ N +N
Sbjct: 259 TNF--KDPDNFTFKG---LEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN 312

Query: 585 GTIPECIGNFSPSLSVLDLRNNRLNGSIP-GTFAESNWLRSLNLNNNELGGAIPQSLVNC 643
             I +        L  L+L  N L GSI    F   + L  L+L+ N +     QS +  
Sbjct: 313 -KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370

Query: 644 TKVEVLDIGNIKI----NDAFPYWLGNLPELQVLVLRSNKFH 681
             ++ L +   ++    +  F      L  LQ + L +N + 
Sbjct: 371 PNLKELALDTNQLKSVPDGIF----DRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  118 bits (298), Expect = 2e-28
 Identities = 82/415 (19%), Positives = 138/415 (33%), Gaps = 72/415 (17%)

Query: 245 RLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPS-SLSNLVQLTYLDLSSNSFFG 303
            + L  +        S   L  L  L +        I + +   L  L  L L  N F  
Sbjct: 34  YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93

Query: 304 EIPDIF-NLTQVSFFDLSNNQLAGPIPSHGS--RLQNLVLIRLNNNSFSGTIPSWLF-SL 359
                F  L  +    L+   L G + S      L +L ++ L +N+     P+  F ++
Sbjct: 94  LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153

Query: 360 PLLEYVRLSDNQLS----GHIDEFPSKSLQNIYLSNNRLQ--------GSIPSSIFELVN 407
                + L+ N++       +  F  K    + LS+  LQ             + F+  +
Sbjct: 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213

Query: 408 LTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACN 467
           +T L L  N F        F  +   K   L  ++               F + +    +
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN--------MGSSFGHTNFKDPD 265

Query: 468 ISAFPRFLRTQDELSYLDLSENKI---DGQIPSWISEIGKDSLSYVNLSHNFITKMKQIP 524
              F     +   +   DLS++KI      + S  ++     L  + L+ N I K   I 
Sbjct: 266 NFTFKGLEASG--VKTCDLSKSKIFALLKSVFSHFTD-----LEQLTLAQNEINK---ID 315

Query: 525 W------KNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDL 578
                   +L  L+L  N L     +       L                    L+VLDL
Sbjct: 316 DNAFWGLTHLLKLNLSQNFLGS---IDSRMFENL------------------DKLEVLDL 354

Query: 579 SNNRLNGTIPECIGNFS--PSLSVLDLRNNRLNGSIP-GTFAESNWLRSLNLNNN 630
           S N +   + +   +F   P+L  L L  N+L  S+P G F     L+ + L+ N
Sbjct: 355 SYNHI-RALGD--QSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  105 bits (265), Expect = 3e-24
 Identities = 78/382 (20%), Positives = 123/382 (32%), Gaps = 62/382 (16%)

Query: 92  WLHGN----IPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCK 147
            L  N    +   TS   L  LQ L +          ++ F    +L    L  +    +
Sbjct: 36  DLSLNSIAELN-ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-Q 93

Query: 148 IPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNF-PINIF-HLPNPQMIRLSQN- 204
           +              + L    ++L  L+L+ C L G     N F  L + +M+ L  N 
Sbjct: 94  LETG---------AFNGL----ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140

Query: 205 -PSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGN 263
              +       N       LD++      + +    L                       
Sbjct: 141 IKKIQPASFFLNMRR-FHVLDLTFNKVKSICEED--LLNFQGKHFTLL-----------R 186

Query: 264 LTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF----NLTQVSFFDL 319
           L+ +TL  +           +      +T LDLS N F   +   F      T++    L
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246

Query: 320 SNNQLAG------------PIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFS-LPLLEYVR 366
           SN+   G                 G     +    L+ +     +   +FS    LE + 
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLT 305

Query: 367 LSDNQLSGHIDE--FPS-KSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIA 422
           L+ N+++  ID+  F     L  + LS N L  SI S +FE L  L  L L  N+   + 
Sbjct: 306 LAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRAL- 362

Query: 423 EPYMFAKLIKLKYLYLSHNSLS 444
               F  L  LK L L  N L 
Sbjct: 363 GDQSFLGLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 97.9 bits (244), Expect = 2e-21
 Identities = 71/375 (18%), Positives = 124/375 (33%), Gaps = 50/375 (13%)

Query: 383 SLQNIYLSNNRLQGSIPSSIF-ELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHN 441
            +  + LS N +   +  + F  L +L  L+++      +     F  L  L  L L +N
Sbjct: 31  HVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 442 SLSL--GNTFKIDSPFPKFSYLSLSACNISAF---PRFLRTQDELSYLDLSENKIDGQIP 496
                    F   +       L+L+ CN+        F +    L  L L +N I    P
Sbjct: 90  QFLQLETGAF---NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146

Query: 497 SWISEIGKDSLSYVNLSHNFITKM-----KQIPWKNLGYLDLRSNLLQG----------- 540
           +            ++L+ N +  +          K+   L L S  LQ            
Sbjct: 147 ASFFL-NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 541 PLPVPPSSLRVLLISNNQFTG---EIIHSICDIIALDVLDLSNNRLNGT---------IP 588
             P   +S+  L +S N F     +          +  L LSN+   G+           
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 589 EC--IGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKV 646
                G  +  +   DL  +++   +   F+    L  L L  NE+      +    T +
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325

Query: 647 EVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESF---PKLRILDLSI 703
             L++    +         NL +L+VL L  N    ++      +SF   P L+ L L  
Sbjct: 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-AL----GDQSFLGLPNLKELALDT 380

Query: 704 NNFSGYLPERFLENL 718
           N     +P+   + L
Sbjct: 381 NQLKS-VPDGIFDRL 394

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 94.8 bits (236), Expect = 1e-20
 Identities = 80/492 (16%), Positives = 145/492 (29%), Gaps = 126/492 (25%)

Query: 337 NLVLIRLNNNSFSGTIPSWLFS-LPLLEYVRLSDNQLSGHIDE--FPS-KSLQNIYLSNN 392
           ++  + L+ NS +  +    FS L  L+++++        I    F    SL  + L  N
Sbjct: 31  HVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 393 RLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPY-MFAKLIKLKYLYLSHNSL-SLGNTF 449
           +    + +  F  L NL  L L   N  G       F  L  L+ L L  N++  +    
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI---- 144

Query: 450 KIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSY 509
               P   F  +                      LDL+ NK+       +        + 
Sbjct: 145 ---QPASFFLNMR-----------------RFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184

Query: 510 VNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICD 569
           + LS   +  M           +      +   P   +S+  L +S N F   +     D
Sbjct: 185 LRLSSITLQDMN----------EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234

Query: 570 IIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNN 629
            IA   +       +  +           +  D  N    G       E++ +++ +L+ 
Sbjct: 235 AIAGTKIQSLILSNSYNMGSSF----GHTNFKDPDNFTFKG------LEASGVKTCDLSK 284

Query: 630 NELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEP 689
           +++  A+                       F     +  +L+ L L  N+          
Sbjct: 285 SKIF-ALL-------------------KSVF----SHFTDLEQLTLAQNEI-----NKID 315

Query: 690 KESF---PKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVT 746
             +F     L  L+LS N     +  R  ENL+ +  +      +R LG++         
Sbjct: 316 DNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQ--------- 365

Query: 747 LKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNL 806
                         F                    L +L+ L L  N            L
Sbjct: 366 -------------SFL------------------GLPNLKELALDTNQLKSVPDGIFDRL 394

Query: 807 AKLESLDLSSNN 818
             L+ + L +N 
Sbjct: 395 TSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 94.0 bits (234), Expect = 2e-20
 Identities = 67/340 (19%), Positives = 119/340 (35%), Gaps = 47/340 (13%)

Query: 86  LDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNIN 145
           L L+   L G + +      L  L+ L L  N+    + +S F   R      L+ + + 
Sbjct: 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167

Query: 146 CKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNP 205
             I  E   L         L+  S +L    +++  L      N F   +   + LS   
Sbjct: 168 S-ICEED-LLNFQGKHFTLLRLSSITL--QDMNEYWLGWEKCGNPFKNTSITTLDLSG-- 221

Query: 206 SLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNL- 264
                   N +   +        + +++   I +         G++ F  P   +   L 
Sbjct: 222 --------NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273

Query: 265 -TQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNN 322
            + +    L  +     + S  S+   L  L L+ N       + F  LT +   +LS N
Sbjct: 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333

Query: 323 QLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLF-SLPLLEYVRLSDNQLSG-HIDEFP 380
            L                         G+I S +F +L  LE + LS N +       F 
Sbjct: 334 FL-------------------------GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL 368

Query: 381 S-KSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNF 418
              +L+ + L  N+L+ S+P  IF+ L +L  + L +N +
Sbjct: 369 GLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 87.1 bits (216), Expect = 4e-18
 Identities = 68/388 (17%), Positives = 122/388 (31%), Gaps = 61/388 (15%)

Query: 481 LSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPW------KNLGYLDLR 534
           ++Y+DLS N I  ++           L ++ +       +  I         +L  L L 
Sbjct: 32  VNYVDLSLNSI-AELNETSFS-RLQDLQFLKVEQQTPGLV--IRNNTFRGLSSLIILKLD 87

Query: 535 SNLLQGPLPVPP------SSLRVLLISNNQFTGEIIHSIC--DIIALDVLDLSNNRLNGT 586
            N       +        ++L VL ++     G ++       + +L++L L +N +   
Sbjct: 88  YNQFLQ---LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144

Query: 587 IPECIGNFSPSLSVLDLRNNRLNGSIPGTFA--ESNWLRSLNLNNNELGGAIPQSLVNCT 644
            P           VLDL  N++           +      L L++  L            
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL------------ 192

Query: 645 KVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVRE-FEPKESFPKLRILDLSI 703
                D+    +             +  L L  N F  S+ + F    +  K++ L LS 
Sbjct: 193 ----QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248

Query: 704 N-NFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKI----- 757
           + N          ++ +       +   ++              L  ++I    +     
Sbjct: 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTC-----------DLSKSKI--FALLKSVF 295

Query: 758 --LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLS 815
              T    +  + N  +         L  L  LNLS N           NL KLE LDLS
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355

Query: 816 SNNVAGKIPKPLTSLTSLSVLNLSHNRL 843
            N++     +    L +L  L L  N+L
Sbjct: 356 YNHIRALGDQSFLGLPNLKELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 42/279 (15%), Positives = 83/279 (29%), Gaps = 31/279 (11%)

Query: 596 PSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQ-SLVNCTKVEVLDIGNI 654
             ++ +DL  N +      +F+    L+ L +     G  I   +    + + +L +   
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 655 KINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERF 714
           +           L  L+VL L      G+V      +    L +L L  NN     P  F
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 715 LENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGE 774
             N+     +     K++ + EE                    L  F    F+       
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEE-------------------DLLNFQGKHFTLL----- 185

Query: 775 ISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLS 834
                 +L S+ L +++      +   +      + +LDLS N     + K      + +
Sbjct: 186 ------RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239

Query: 835 VLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLT 873
            +          +        F++       GL    + 
Sbjct: 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK 278

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  114 bits (287), Expect = 5e-28
 Identities = 60/247 (24%), Positives = 92/247 (37%), Gaps = 18/247 (7%)

Query: 257 VPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSN--SFFGEIPDIF-NLTQ 313
           VP  +   +  T L L  N            L QLT L LSSN  SF G         T 
Sbjct: 22  VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79

Query: 314 VSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFS-LPLLEYVRLSDNQL 372
           + + DLS N +   + S+   L+ L  +   +++        +F  L  L Y+ +S    
Sbjct: 80  LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138

Query: 373 SG-HIDEFPS-KSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAK 429
                  F    SL+ + ++ N  Q +    IF  L NLT L L       +  P  F  
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-SPTAFNS 197

Query: 430 LIKLKYLYLSHNSLSL--GNTFKIDSPFPKFSYLSLSACNISAFPR--FLRTQDELSYLD 485
           L  L+ L +SHN+        +K          L  S  +I    +         L++L+
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYK---CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254

Query: 486 LSENKID 492
           L++N   
Sbjct: 255 LTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 98.5 bits (246), Expect = 1e-22
 Identities = 61/261 (23%), Positives = 105/261 (40%), Gaps = 26/261 (9%)

Query: 315 SFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFS-LPLLEYVRLSDNQLS 373
           +    ++  L   +P+      +   + L +N    ++P  +F  L  L  + LS N LS
Sbjct: 10  TEIRCNSKGLTS-VPTGIPS--SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 374 ----GHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAK 429
                   +F + SL+ + LS N +  ++ S+   L  L  L    +N   ++E  +F  
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 430 LIKLKYLYLSHNSLSL--GNTFKIDSPFPKFSYLSLSACNISAF--PRFLRTQDELSYLD 485
           L  L YL +SH    +     F   +       L ++  +      P        L++LD
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIF---NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181

Query: 486 LSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLG---YLDLRSNLLQ--- 539
           LS+ +++ Q+          SL  +N+SHN    +   P+K L     LD   N +    
Sbjct: 182 LSQCQLE-QLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239

Query: 540 -GPLPVPPSSLRVLLISNNQF 559
              L   PSSL  L ++ N F
Sbjct: 240 KQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 95.1 bits (237), Expect = 2e-21
 Identities = 67/262 (25%), Positives = 107/262 (40%), Gaps = 29/262 (11%)

Query: 365 VRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGI-A 422
           +R +   L+      PS S   + L +N+LQ S+P  +F+ L  LT L L SN  S    
Sbjct: 12  IRCNSKGLTSVPTGIPS-SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGC 69

Query: 423 EPYMFAKLIKLKYLYLSHNSL-SLGNTFKIDSPFPKFSYLSLSACNISAFPR--FLRTQD 479
                     LKYL LS N + ++ + F       +  +L     N+          +  
Sbjct: 70  CSQSDFGTTSLKYLDLSFNGVITMSSNF---LGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126

Query: 480 ELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPW------KNLGYLDL 533
            L YLD+S         + I   G  SL  + ++ N  +  +          +NL +LDL
Sbjct: 127 NLIYLDISHTHTR-VAFNGIFN-GLSSLEVLKMAGN--SFQENFLPDIFTELRNLTFLDL 182

Query: 534 RSNLLQGPLPVPP------SSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTI 587
               L+    + P      SSL+VL +S+N F          + +L VLD S N +  + 
Sbjct: 183 SQCQLEQ---LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239

Query: 588 PECIGNFSPSLSVLDLRNNRLN 609
            + + +F  SL+ L+L  N   
Sbjct: 240 KQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 89.7 bits (223), Expect = 1e-19
 Identities = 58/305 (19%), Positives = 92/305 (30%), Gaps = 76/305 (24%)

Query: 546 PSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFS--PSLSVLDL 603
           PSS   L + +N+           +  L  L LS+N L+     C  +     SL  LDL
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDFGTTSLKYLDL 85

Query: 604 RNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYW 663
             N +  ++   F     L  L+  ++ L      S+                       
Sbjct: 86  SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV----------------------- 121

Query: 664 LGNLPELQVLVLRSNKFHGSVREFEPKESF---PKLRILDLSINNFSGYLPERFLENLNA 720
             +L  L  L +       +         F     L +L ++ N+F           L  
Sbjct: 122 FLSLRNLIYLDISHTHTRVA-----FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL-- 174

Query: 721 MRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIG 780
                     L +L                              D S    +        
Sbjct: 175 --------RNLTFL------------------------------DLSQCQLEQLSPTAFN 196

Query: 781 KLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSL-TSLSVLNLS 839
            L SL++LN+SHN+F          L  L+ LD S N++     + L    +SL+ LNL+
Sbjct: 197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256

Query: 840 HNRLD 844
            N   
Sbjct: 257 QNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 76.2 bits (188), Expect = 4e-15
 Identities = 51/269 (18%), Positives = 81/269 (30%), Gaps = 52/269 (19%)

Query: 92  WLHGN----IPTNTSLFHLLHLQTLNLSHNDFDYSEISSG-FSRFRNLTHFSLSDSNINC 146
            L  N    +P       L  L  L+LS N   +    S       +L +  LS + +  
Sbjct: 34  ELESNKLQSLPHGV-FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-- 90

Query: 147 KIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIF-HLPNPQMIRLSQNP 205
                         +  +   L   L  L      L+     ++F  L N          
Sbjct: 91  ------------ITMSSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRN---------- 127

Query: 206 SLAGKFPANNWTSPIEYLDVSETSFSELPDSI-GNLKLLGRLMLGYSQFVGPVPA-SLGN 263
                         + YLD+S T      + I   L  L  L +  + F           
Sbjct: 128 --------------LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173

Query: 264 LTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNN 322
           L  LT L L         P++ ++L  L  L++S N+FF      +  L  +   D S N
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233

Query: 323 QLAGPIPSH--GSRLQNLVLIRLNNNSFS 349
            +              +L  + L  N F+
Sbjct: 234 HIMT-SKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 33/163 (20%), Positives = 55/163 (33%), Gaps = 17/163 (10%)

Query: 689 PKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLK 748
           P         L+L  N     LP    + L  +  +S     L + G     D    +LK
Sbjct: 23  PTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK 81

Query: 749 GTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSL-GNLA 807
             ++    ++T+       S+ F G        L  L  L+  H++       S+  +L 
Sbjct: 82  YLDLSFNGVITM-------SSNFLG--------LEQLEHLDFQHSNLKQMSEFSVFLSLR 126

Query: 808 KLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHG 850
            L  LD+S  +           L+SL VL ++ N         
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  114 bits (287), Expect = 8e-28
 Identities = 64/296 (21%), Positives = 104/296 (35%), Gaps = 52/296 (17%)

Query: 258 PASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFF 317
                NL  L  L L++N  S   P + + LV+L  L LS N           L +    
Sbjct: 69  DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN----------QLKE---- 114

Query: 318 DLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFS-LPLLEYVRLSDNQL-SGH 375
                     +P      + L  +R++ N  +  +   +F+ L  +  V L  N L S  
Sbjct: 115 ----------LPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSG 161

Query: 376 IDE--F-PSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIK 432
           I+   F   K L  I +++  +  +IP  +    +LT+L LD N  + + +      L  
Sbjct: 162 IENGAFQGMKKLSYIRIADTNIT-TIPQGLPP--SLTELHLDGNKITKV-DAASLKGLNN 217

Query: 433 LKYLYLSHNSLSL--GNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENK 490
           L  L LS NS+S     +    +  P    L L+   +   P  L     +  + L  N 
Sbjct: 218 LAKLGLSFNSISAVDNGSL---ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 274

Query: 491 I----DGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPW------KNLGYLDLRSN 536
           I                K S S V+L  N +    +I             + L + 
Sbjct: 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ-YWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 92.0 bits (229), Expect = 3e-20
 Identities = 44/307 (14%), Positives = 98/307 (31%), Gaps = 37/307 (12%)

Query: 546 PSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRN 605
           P    +L + NN+ T        ++  L  L L NN+++  I          L  L L  
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSK 109

Query: 606 NRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAF--PYW 663
           N+L             L+ L ++ NE+            ++ V+++G   +  +      
Sbjct: 110 NQLKELPEKMPKT---LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166

Query: 664 LGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRN 723
              + +L  + +       ++    P+   P L  L L  N  +  +    L+ LN +  
Sbjct: 167 FQGMKKLSYIRIADTNIT-TI----PQGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAK 220

Query: 724 VSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLH 783
           +      +  +           +L                +  ++N    ++   +    
Sbjct: 221 LGLSFNSISAVDNG--------SLAN--------TPHLRELHLNNNKLV-KVPGGLADHK 263

Query: 784 SLRLLNLSHNHFTG------QIPSSLGNLAKLESLDLSSNNVAGKI--PKPLTSLTSLSV 835
            ++++ L +N+ +         P      A    + L SN V      P     +   + 
Sbjct: 264 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323

Query: 836 LNLSHNR 842
           + L + +
Sbjct: 324 VQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.7 bits (218), Expect = 8e-19
 Identities = 67/351 (19%), Positives = 119/351 (33%), Gaps = 90/351 (25%)

Query: 82  NVISLDLSCSWLHGNIPT--NTSLFHLLHLQTLNLSHNDFDYSEISSG-FSRFRNLTHFS 138
           +   LDL     +  I    +    +L +L TL L +N    S+IS G F+    L    
Sbjct: 53  DTALLDLQ----NNKITEIKDGDFKNLKNLHTLILINNKI--SKISPGAFAPLVKLERLY 106

Query: 139 LSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIF-HLPNPQ 197
           LS + +  ++P                + +  +L  L + +  +      ++F  L    
Sbjct: 107 LSKNQLK-ELP----------------EKMPKTLQELRVHENEIT-KVRKSVFNGLNQMI 148

Query: 198 MIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPV 257
           ++ L  N              P++   +   +F         +K L  + +  +     +
Sbjct: 149 VVELGTN--------------PLKSSGIENGAFQ-------GMKKLSYIRIADTNITT-I 186

Query: 258 PASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD--IFNLTQVS 315
           P  L     LT LHL  N  +    +SL  L  L  L LS NS    + +  + N   + 
Sbjct: 187 PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLR 243

Query: 316 FFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSG- 374
              L+NN+L                           +P  L     ++ V L +N +S  
Sbjct: 244 ELHLNNNKLV-------------------------KVPGGLADHKYIQVVYLHNNNISAI 278

Query: 375 HIDEFPS-------KSLQNIYLSNNRLQ-GSIPSSIFE-LVNLTDLQLDSN 416
             ++F          S   + L +N +Q   I  S F  +     +QL + 
Sbjct: 279 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 84.3 bits (209), Expect = 1e-17
 Identities = 60/277 (21%), Positives = 105/277 (37%), Gaps = 40/277 (14%)

Query: 573 LDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNEL 632
           L V+  S+  L   +P+   +  P  ++LDL+NN++     G F     L +L L NN++
Sbjct: 33  LRVVQCSDLGLE-KVPK---DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 633 GGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKES 692
               P +     K+E L +   ++    P        LQ L +  N+    V     K  
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQL-KELP--EKMPKTLQELRVHENEIT-KV----RKSV 140

Query: 693 F---PKLRILDLSINNF-SGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLK 748
           F    ++ +++L  N   S  +     + +           KL Y+            + 
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMK----------KLSYI-----------RIA 179

Query: 749 GTEIEM--QKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNL 806
            T I    Q +    T +    N      +  +  L++L  L LS N  +     SL N 
Sbjct: 180 DTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239

Query: 807 AKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRL 843
             L  L L++N +  K+P  L     + V+ L +N +
Sbjct: 240 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  116 bits (293), Expect = 3e-27
 Identities = 63/330 (19%), Positives = 122/330 (36%), Gaps = 43/330 (13%)

Query: 221 EYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGH 280
             L+V E+  + LPD +     +  L++  +     +PA    L  L +      N    
Sbjct: 43  AVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPALPPELRTLEV----SGNQLTS 95

Query: 281 IPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVL 340
           +P     L++L+               +  L       +  NQL   +P     LQ L  
Sbjct: 96  LPVLPPGLLELSIFSNPLTHLPALPSGLCKL------WIFGNQLTS-LPVLPPGLQEL-- 146

Query: 341 IRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPS 400
             +++N  + ++P+    L  L      +NQL+  +   PS  LQ + +S+N+L  S+P+
Sbjct: 147 -SVSDNQLA-SLPALPSELCKL---WAYNNQLT-SLPMLPS-GLQELSVSDNQLA-SLPT 198

Query: 401 SIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSY 460
                  L  L   +N  + +           LK L +S N L+      +     +   
Sbjct: 199 LPS---ELYKLWAYNNRLTSLPA-----LPSGLKELIVSGNRLT-----SLPVLPSELKE 245

Query: 461 LSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKM 520
           L +S   +++ P        L  L +  N++  ++P  +  +   S + VNL  N +++ 
Sbjct: 246 LMVSGNRLTSLPMLP---SGLLSLSVYRNQLT-RLPESLIHL--SSETTVNLEGNPLSER 299

Query: 521 KQIPWKNLGYLDLRSNLLQGPLPVPPSSLR 550
                + +      S  +        S+ R
Sbjct: 300 TLQALREITSAPGYSGPIIRFDMAGASAPR 329

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  108 bits (271), Expect = 2e-24
 Identities = 64/339 (18%), Positives = 120/339 (35%), Gaps = 39/339 (11%)

Query: 220 IEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSG 279
           I  L + + + + LP     L+    L +  +Q    +P     L +L++          
Sbjct: 63  ITTLVIPDNNLTSLPALPPELR---TLEVSGNQLTS-LPVLPPGLLELSIFSNPLT---- 114

Query: 280 HIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLV 339
           H+P+  S    L  L +  N           L +     +S+NQLA  +P+  S L  L 
Sbjct: 115 HLPALPSG---LCKLWIFGNQLTSLPVLPPGLQE---LSVSDNQLAS-LPALPSELCKL- 166

Query: 340 LIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIP 399
                NN  + ++P        L+ + +SDNQL+  +   PS  L  ++  NNRL  S+P
Sbjct: 167 --WAYNNQLT-SLPM---LPSGLQELSVSDNQLA-SLPTLPS-ELYKLWAYNNRLT-SLP 217

Query: 400 SSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFS 459
           +       L +L +  N  + +          +LK L +S N L+      +        
Sbjct: 218 ALP---SGLKELIVSGNRLTSL-----PVLPSELKELMVSGNRLT-----SLPMLPSGLL 264

Query: 460 YLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITK 519
            LS+    ++  P  L      + ++L  N +  +    + EI         +    +  
Sbjct: 265 SLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAG 324

Query: 520 MKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQ 558
               P +        ++ L       P+      +   +
Sbjct: 325 A-SAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  106 bits (265), Expect = 9e-24
 Identities = 62/352 (17%), Positives = 113/352 (32%), Gaps = 65/352 (18%)

Query: 511 NLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDI 570
                 + KM+         L++  + L       P+ +  L+I +N  T  +     + 
Sbjct: 25  RGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLT-SLPALPPE- 82

Query: 571 IALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNN 630
             L  L++S N+L  ++P         LS+       L     G       L  L +  N
Sbjct: 83  --LRTLEVSGNQLT-SLPVLPPGL-LELSIFSNPLTHLPALPSG-------LCKLWIFGN 131

Query: 631 ELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPK 690
           +L  ++P       +   L + + ++  + P     L +L      +N+           
Sbjct: 132 QLT-SLPVLPPGLQE---LSVSDNQLA-SLPALPSELCKLW---AYNNQLT------SLP 177

Query: 691 ESFPKLRILDLSINNFSGYLPERF--LENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLK 748
                L+ L +S N  +  LP     L  L A  N      +L  L              
Sbjct: 178 MLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNN------RLTSLPAL----------- 219

Query: 749 GTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAK 808
                     +    +  S N     ++ +      L+ L +S N  T  +P     L  
Sbjct: 220 ---------PSGLKELIVSGN----RLTSLPVLPSELKELMVSGNRLT-SLPMLPSGL-- 263

Query: 809 LESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDS 860
             SL +  N +  ++P+ L  L+S + +NL  N L        +  T     
Sbjct: 264 -LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGY 313

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  104 bits (260), Expect = 4e-23
 Identities = 65/351 (18%), Positives = 120/351 (34%), Gaps = 62/351 (17%)

Query: 504 KDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEI 563
            +  + +N+  + +T +      ++  L +  N L   LP  P  LR L +S NQ T  +
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLT-SL 96

Query: 564 IHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLR 623
                 ++ L +       L              L  L +  N+L  S+P        L+
Sbjct: 97  PVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGNQLT-SLP---VLPPGLQ 144

Query: 624 SLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGS 683
            L++++N+L  ++P       K   L   N ++  + P     L   Q L +  N+    
Sbjct: 145 ELSVSDNQLA-SLPALPSELCK---LWAYNNQLT-SLPMLPSGL---QELSVSDNQLA-- 194

Query: 684 VREFEPKESFPKLRILDLSINNFSGYLPERF--LENLNAMRNVSADEGKLRYLGEEYYQD 741
                      +L  L    N  +  LP     L+ L    N      +L  L       
Sbjct: 195 ----SLPTLPSELYKLWAYNNRLT-SLPALPSGLKELIVSGN------RLTSLPVL---- 239

Query: 742 SVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPS 801
                            +    +  S N     +  +   L SL   ++  N  T ++P 
Sbjct: 240 ----------------PSELKELMVSGNRLT-SLPMLPSGLLSL---SVYRNQLT-RLPE 278

Query: 802 SLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQ 852
           SL +L+   +++L  N ++ +  + L  +TS    +    R D      P+
Sbjct: 279 SLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPR 329

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =   99 bits (249), Expect = 7e-22
 Identities = 70/401 (17%), Positives = 125/401 (31%), Gaps = 51/401 (12%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSD 141
               L++  S L   +P         H+ TL +  N+   + + +       L    +S 
Sbjct: 41  GNAVLNVGESGLT-TLPDCL----PAHITTLVIPDNNL--TSLPALPP---ELRTLEVSG 90

Query: 142 SNINCKIPYEISFLK---MSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQM 198
           + +   +P     L    + +  L  L  L S L  L +    L  + P+    L   Q 
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPVLPPGL---QE 145

Query: 199 IRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVP 258
           + +S N       PA    S +  L       + LP     L+    L +  +Q    +P
Sbjct: 146 LSVSDNQL--ASLPA--LPSELCKLWAYNNQLTSLPMLPSGLQ---ELSVSDNQLAS-LP 197

Query: 259 ASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFD 318
                L +L   +         +P+  S    L  L +S N     +P     +++    
Sbjct: 198 TLPSELYKLWAYNNRLT----SLPALPSG---LKELIVSGNR-LTSLPV--LPSELKELM 247

Query: 319 LSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDE 378
           +S N+L   +P        L+ + +  N  +  +P  L  L     V L  N LS    +
Sbjct: 248 VSGNRLTS-LP---MLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302

Query: 379 FPSKSLQNIYLSNNRL------QGSIPSSIFELVNLTDLQLDSNNF---SGIAEPYMFAK 429
              + + +    +  +        S P     L       L        +     +MF +
Sbjct: 303 AL-REITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQ 361

Query: 430 LIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISA 470
                   L  + LS    F  D+ F       L+      
Sbjct: 362 EDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDE 402

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 92.6 bits (230), Expect = 2e-19
 Identities = 66/374 (17%), Positives = 124/374 (33%), Gaps = 69/374 (18%)

Query: 481 LSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQG 540
            + L++ E+ +   +P     +    ++ + +  N +T +  +P   L  L++  N L  
Sbjct: 42  NAVLNVGESGL-TTLPD---CLPA-HITTLVIPDNNLTSLPALP-PELRTLEVSGNQLTS 95

Query: 541 PLPVPPSSLRVLLISNNQFTGEIIHSICDII-ALDVLDLSNNRLNGTIPECIGNFSPSLS 599
            LPV P  L  L I +N  T      +  +   L  L +  N+L  ++P         L 
Sbjct: 96  -LPVLPPGLLELSIFSNPLT-----HLPALPSGLCKLWIFGNQLT-SLPVLPPG----LQ 144

Query: 600 VLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDA 659
            L + +N+L  S+P   +E   L  L   NN+L  ++P       +   L + + ++  +
Sbjct: 145 ELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPMLPSGLQE---LSVSDNQLA-S 195

Query: 660 FPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERF--LEN 717
            P     L +L     R                   L+ L +S  N    LP     L+ 
Sbjct: 196 LPTLPSELYKLWAYNNRLTSL---------PALPSGLKELIVS-GNRLTSLPVLPSELKE 245

Query: 718 LNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQ 777
           L    N      +L  L                        +   ++    N     + +
Sbjct: 246 LMVSGN------RLTSLPML--------------------PSGLLSLSVYRNQLT-RLPE 278

Query: 778 VIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLD---LSSNNVAGKIPKPLTSLTSLS 834
            +  L S   +NL  N  + +   +L  +          +  +      P+   +L   +
Sbjct: 279 SLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAA 338

Query: 835 VLNLSHNRLDGPIP 848
              L   R   P P
Sbjct: 339 ADWLVPAREGEPAP 352

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 90.0 bits (223), Expect = 1e-18
 Identities = 52/340 (15%), Positives = 92/340 (27%), Gaps = 58/340 (17%)

Query: 81  GNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLS 140
             + +L++S + L  ++P       LL L   +                    L    + 
Sbjct: 81  PELRTLEVSGNQLT-SLPV--LPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIF 129

Query: 141 DSNINCKIPYEISFLK---MSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQ 197
            + +   +P     L+   +S   L SL  L S L  L   +  L  + P+    L    
Sbjct: 130 GNQLT-SLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLT-SLPMLPSGL---- 183

Query: 198 MIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPV 257
                                  + L VS+   + LP     L  L       +      
Sbjct: 184 -----------------------QELSVSDNQLASLPTLPSELYKLWAYNNRLTSL---- 216

Query: 258 PASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFF 317
           PA    L +L +      N    +P   S    L  L +S N     +P     + +   
Sbjct: 217 PALPSGLKELIVS----GNRLTSLPVLPSE---LKELMVSGN-RLTSLPM--LPSGLLSL 266

Query: 318 DLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHID 377
            +  NQL   +P     L +   + L  N  S      L  +           +      
Sbjct: 267 SVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGA 325

Query: 378 EFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNN 417
             P ++      + + L  +                + N 
Sbjct: 326 SAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 55.3 bits (133), Expect = 6e-08
 Identities = 62/345 (17%), Positives = 106/345 (30%), Gaps = 46/345 (13%)

Query: 81  GNVISLDLSCSWLHGNIPTNTSLFHLL-HLQTLNLSHNDFDYSEISSGFSRFRNLTHFSL 139
             +  L +S + L        SL  L   L  L   +N    + +    S    L   S+
Sbjct: 141 PGLQELSVSDNQL-------ASLPALPSELCKLWAYNNQL--TSLPMLPS---GLQELSV 188

Query: 140 SDSNINCKIPYEIS---FLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNP 196
           SD+ +   +P   S    L      L SL  L S L  L +S   L  + P+    L   
Sbjct: 189 SDNQL-ASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVLPSEL--- 243

Query: 197 QMIRLSQN-----PSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYS 251
           + + +S N     P L            +  L V     + LP+S+ +L     + L  +
Sbjct: 244 KELMVSGNRLTSLPMLPSG---------LLSLSVYRNQLTRLPESLIHLSSETTVNLEGN 294

Query: 252 QFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNL 311
                       L ++T              +  S   +   L L++  +     +    
Sbjct: 295 PLSERTLQ---ALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPA 351

Query: 312 TQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQ 371
               +        A        RL         +  F   I SWL  L   E +R +   
Sbjct: 352 PADRWHMFGQEDNADAFSLFLDRLSETENFI-KDAGFKAQISSWLAQLAEDEALRANTFA 410

Query: 372 LSGHIDE-------FPSKSLQNIYLSNNRLQGSIPSSIFELVNLT 409
           ++            F    ++N+ L +N  +G   + +  LV   
Sbjct: 411 MATEATSSCEDRVTFFLHQMKNVQLVHNAEKGQYDNDLAALVATG 455

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  110 bits (278), Expect = 7e-26
 Identities = 72/396 (18%), Positives = 132/396 (33%), Gaps = 43/396 (10%)

Query: 263 NLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNN 322
           N                    S   L  LT LD  ++S   ++  I  LT ++    ++N
Sbjct: 19  NFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSS-ITDMTGIEKLTGLTKLICTSN 74

Query: 323 QLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSK 382
            +     S      NL  +  ++N  +  +   +  L  L Y+    N+L+  +D   + 
Sbjct: 75  NITTLDLSQ---NTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLDVSQNP 127

Query: 383 SLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNS 442
            L  +  + N L   I  S      LT+L    N               +L  L  S N 
Sbjct: 128 LLTYLNCARNTLT-EIDVS--HNTQLTELDCHLNK---KITKLDVTPQTQLTTLDCSFNK 181

Query: 443 LSLGNTFKID-SPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISE 501
           ++     ++D S     + L+    NI+     L    +L++LD S NK+     + I  
Sbjct: 182 IT-----ELDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKL-----TEIDV 229

Query: 502 IGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPP-SSLRVLLISNNQFT 560
                L+Y + S N +T++       L  L      L   + +   + L        +  
Sbjct: 230 TPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLE-IDLTHNTQLIYFQAEGCRKI 288

Query: 561 GEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESN 620
            E+   +     L +LD     +   +   +    P L  L L N  L   +    + + 
Sbjct: 289 KEL--DVTHNTQLYLLDCQAAGIT-ELD--LSQN-PKLVYLYLNNTELT-ELD--VSHNT 339

Query: 621 WLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKI 656
            L+SL+  N  +      S+     +        + 
Sbjct: 340 KLKSLSCVNAHI-QDFS-SVGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  105 bits (264), Expect = 5e-24
 Identities = 69/377 (18%), Positives = 131/377 (34%), Gaps = 40/377 (10%)

Query: 261 LGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLS 320
           +  LT LT L    NN +  +   LS    LTYL   SN       D+  LT++++ +  
Sbjct: 60  IEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKL--TNLDVTPLTKLTYLNCD 114

Query: 321 NNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFP 380
            N+L        S+   L  +    N+ +  I   +     L  +    N+    +D  P
Sbjct: 115 TNKLT---KLDVSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLDVTP 168

Query: 381 SKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSH 440
              L  +  S N++       + +   L  L  D+NN + +       + I+L +L  S 
Sbjct: 169 QTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSS 221

Query: 441 NSLSLGNTFKID-SPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWI 499
           N L+     +ID +P  + +Y   S   ++       ++  L+ L   +  +       I
Sbjct: 222 NKLT-----EIDVTPLTQLTYFDCSVNPLTELDVSTLSK--LTTLHCIQTDLLE-----I 269

Query: 500 SEIGKDSLSYVNLSHNFITKMKQIP-WKNLGYLDLRSNLLQGPLPV-PPSSLRVLLISNN 557
                  L Y         K   +     L  LD ++  +   L +     L  L ++N 
Sbjct: 270 DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELDLSQNPKLVYLYLNNT 328

Query: 558 QFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFA 617
           + T E+   +     L  L   N  +            P+L+       +       T  
Sbjct: 329 ELT-EL--DVSHNTKLKSLSCVNAHIQ-DFSSVGKI--PALNNNFEAEGQTITMPKETLT 382

Query: 618 ESNWLRSLNLNNNELGG 634
            ++   +++ +  +  G
Sbjct: 383 NNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 99.0 bits (247), Expect = 6e-22
 Identities = 75/471 (15%), Positives = 139/471 (29%), Gaps = 87/471 (18%)

Query: 96  NIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFL 155
                 S   L  L +L+  ++        +G  +   LT    + +NI       +   
Sbjct: 31  QATDTISEEQLATLTSLDCHNSSI---TDMTGIEKLTGLTKLICTSNNIT-----TLDLS 82

Query: 156 KMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANN 215
           +             ++LT L+     L                + ++    L        
Sbjct: 83  QN------------TNLTYLACDSNKLTN--------------LDVTPLTKL-------- 108

Query: 216 WTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHN 275
                 YL+      ++L   +    LL  L    +         + + TQLT L    N
Sbjct: 109 -----TYLNCDTNKLTKLD--VSQNPLLTYLNCARNTL---TEIDVSHNTQLTELDCHLN 158

Query: 276 NFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRL 335
                    ++   QLT LD S N       D+     ++  +   N +     +     
Sbjct: 159 KKIT--KLDVTPQTQLTTLDCSFNKI--TELDVSQNKLLNRLNCDTNNITKLDLNQ---N 211

Query: 336 QNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQ 395
             L  +  ++N  +  I   +  L  L Y   S N L+  +D      L  ++     L 
Sbjct: 212 IQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELDVSTLSKLTTLHCIQTDLL 267

Query: 396 GSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKID-SP 454
             I  +      L   Q +        +        +L  L      ++     ++D S 
Sbjct: 268 -EIDLT--HNTQLIYFQAEGCRKIKELD---VTHNTQLYLLDCQAAGIT-----ELDLSQ 316

Query: 455 FPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGK-DSLSYVNLS 513
            PK  YL L+   ++     +    +L  L      I        S +GK  +L+    +
Sbjct: 317 NPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHI-----QDFSSVGKIPALNNNFEA 369

Query: 514 HNFITKMKQIPWKNLG-YLDLRSNLLQG---PLPVPPSSLRVLLISNNQFT 560
                 M +    N    + +  +LL     P+ + P    V   + N  T
Sbjct: 370 EGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTIT 420

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 95.9 bits (239), Expect = 6e-21
 Identities = 74/514 (14%), Positives = 156/514 (30%), Gaps = 110/514 (21%)

Query: 367 LSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYM 426
           L   Q     D FP  +  +   +   +Q +   S  +L  LT L   +++ + +     
Sbjct: 3   LKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--- 59

Query: 427 FAKLIKLKYLYLSHNSLSLGNTFKID-SPFPKFSYLSLSACNISAFPRFLRTQDELSYLD 485
             KL  L  L  + N+++      +D S     +YL+  +  ++     +    +L+YL+
Sbjct: 60  IEKLTGLTKLICTSNNIT-----TLDLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112

Query: 486 LSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVP 545
              NK+       +       L+Y+N + N +T++       L  LD   N     L V 
Sbjct: 113 CDTNKLTK-----LDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVT 167

Query: 546 P-SSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLR 604
           P + L  L  S N+ T      +     L+ L+   N +   +   +      L+ LD  
Sbjct: 168 PQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT-KLD--LNQN-IQLTFLDCS 220

Query: 605 NNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWL 664
           +N+L                +++                T++   D     + +     +
Sbjct: 221 SNKLT--------------EIDVTP-------------LTQLTYFDCSVNPLTE---LDV 250

Query: 665 GNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNV 724
             L +L  L                     +L             + E  + +   +  +
Sbjct: 251 STLSKLTTLHCIQTDLLEI-----DLTHNTQLIYFQAEGCR---KIKELDVTHNTQLYLL 302

Query: 725 SADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHS 784
                 +                              T +D S             +   
Sbjct: 303 DCQAAGI------------------------------TELDLS-------------QNPK 319

Query: 785 LRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLD 844
           L  L L++   T ++   + +  KL+SL   + ++       +  + +L+    +  +  
Sbjct: 320 LVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI 374

Query: 845 GPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKCGN 878
                    N+         L   G P+  + G+
Sbjct: 375 TMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGD 408

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 95.5 bits (238), Expect = 9e-21
 Identities = 70/408 (17%), Positives = 135/408 (33%), Gaps = 42/408 (10%)

Query: 336 QNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS-KSLQNIYLSNNRL 394
            N             T       L  L  +   ++ ++  +        L  +  ++N +
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGIEKLTGLTKLICTSNNI 76

Query: 395 QGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSP 454
             ++   + +  NLT L  DSN  + +        L KL YL    N L+  +     S 
Sbjct: 77  T-TLD--LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTNKLTKLD----VSQ 125

Query: 455 FPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSH 514
            P  +YL+ +   ++     +    +L+ LD   NK      + +    +  L+ ++ S 
Sbjct: 126 NPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKI----TKLDVTPQTQLTTLDCSF 179

Query: 515 NFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALD 574
           N IT++     K L  L+  +N +          L  L  S+N+ T      +  +  L 
Sbjct: 180 NKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE---IDVTPLTQLT 236

Query: 575 VLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGG 634
             D S N L   +          L+ L      L   I      +  L            
Sbjct: 237 YFDCSVNPLT-ELDVST---LSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIK 289

Query: 635 AIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFP 694
            +   + + T++ +LD     I +     L   P+L  L L + +    +          
Sbjct: 290 ELD--VTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELT-EL----DVSHNT 339

Query: 695 KLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDS 742
           KL+ L     +         +  + A+ N    EG+   + +E   ++
Sbjct: 340 KLKSLSCVNAHIQ-DFSS--VGKIPALNNNFEAEGQTITMPKETLTNN 384

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  110 bits (276), Expect = 1e-25
 Identities = 64/267 (23%), Positives = 102/267 (38%), Gaps = 26/267 (9%)

Query: 226 SETSFSELPDSI-GNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSS 284
           +    SE+P  I  N +    L L  +        +  +L  L +L L  N+       +
Sbjct: 62  TRRGLSEVPQGIPSNTR---YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA 118

Query: 285 LSNLVQLTYLDLSSNSFFGEIP-DIF-NLTQVSFFDLSNNQLAGPIPSHG-SRLQNLVLI 341
            + L  L  L+L  N     IP   F  L+++    L NN +   IPS+  +R+ +L+ +
Sbjct: 119 FNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRL 176

Query: 342 RLNNNSFSGTIPSWLFS-LPLLEYVRLSDNQLSGHIDEFPS-KSLQNIYLSNNRLQGSIP 399
            L        I    F  L  L+Y+ L    +   +        L+ + +S N     I 
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFP-EIR 234

Query: 400 SSIFE-LVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSL--GNTFKIDSPFP 456
              F  L +L  L + ++  S I E   F  L  L  L L+HN+LS    + F   +P  
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVSLI-ERNAFDGLASLVELNLAHNNLSSLPHDLF---TPLR 290

Query: 457 KFSYLSLSA------CNISAFPRFLRT 477
               L L        C+I     +LR 
Sbjct: 291 YLVELHLHHNPWNCDCDILWLAWWLRE 317

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 98.3 bits (245), Expect = 1e-21
 Identities = 65/236 (27%), Positives = 104/236 (44%), Gaps = 21/236 (8%)

Query: 265 TQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IF-NLTQVSFFDLSNN 322
           +    L+LM NN       +  +L  L  L L  NS   +I    F  L  ++  +L +N
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN 133

Query: 323 QLAGPIPSHG-SRLQNLVLIRLNNNSFSGTIPSWLFS-LPLLEYVRLSD-NQLSGHIDE- 378
            L   IPS     L  L  + L NN    +IPS+ F+ +P L  + L +  +L  +I E 
Sbjct: 134 WLTV-IPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLE-YISEG 190

Query: 379 -FPS-KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYL 436
            F    +L+ + L    ++  +P ++  LV L +L++  N+F  I  P  F  L  LK L
Sbjct: 191 AFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEI-RPGSFHGLSSLKKL 247

Query: 437 YLSHNSLSL--GNTFKIDSPFPKFSYLSLSACNISAFPR-FLRTQDELSYLDLSEN 489
           ++ ++ +SL   N F           L+L+  N+S+ P         L  L L  N
Sbjct: 248 WVMNSQVSLIERNAF---DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 95.2 bits (237), Expect = 9e-21
 Identities = 56/273 (20%), Positives = 90/273 (32%), Gaps = 58/273 (21%)

Query: 576 LDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGA 635
           +  +   L+  +P+       +   L+L  N +      TF   + L  L L  N +   
Sbjct: 59  VVCTRRGLS-EVPQ---GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI 114

Query: 636 IPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESF-- 693
              +      +  L++ +  +          L +L+ L LR+N    S+    P  +F  
Sbjct: 115 EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SI----PSYAFNR 169

Query: 694 -PKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEI 752
            P L  LDL       Y+ E   E L            L+YL                  
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGL----------FNLKYL------------------ 201

Query: 753 EMQKILTVFTTIDFSSNGFDGEISQV--IGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLE 810
                       +         I  +  +  L  L  L +S NHF    P S   L+ L+
Sbjct: 202 ------------NLGMC----NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245

Query: 811 SLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRL 843
            L + ++ V+         L SL  LNL+HN L
Sbjct: 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 90.2 bits (224), Expect = 4e-19
 Identities = 66/334 (19%), Positives = 103/334 (30%), Gaps = 96/334 (28%)

Query: 360 PLLEYVRLSDNQLSGHIDEFPS---KSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDS 415
                V  +   LS    E P     + + + L  N +Q  I +  F  L +L  LQL  
Sbjct: 54  NQFSKVVCTRRGLS----EVPQGIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGR 108

Query: 416 NNFSGIAEPYMFAKLIKLKYLYLSHNSLSL--GNTFKIDSPFPKFSYLSLSACNISAFP- 472
           N+   I E   F  L  L  L L  N L++     F       K   L L    I + P 
Sbjct: 109 NSIRQI-EVGAFNGLASLNTLELFDNWLTVIPSGAF---EYLSKLRELWLRNNPIESIPS 164

Query: 473 ---RFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLG 529
                +     L  LDL E K        +  I + +                       
Sbjct: 165 YAFNRVP---SLMRLDLGELK-------KLEYISEGAFE--------------------- 193

Query: 530 YLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPE 589
                  L          +L+ L +         + ++  ++ L+ L++S N     I  
Sbjct: 194 ------GL---------FNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFP-EIRP 235

Query: 590 CIGNFS--PSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVE 647
             G+F    SL  L + N++++      F     L  LNL +N L  ++P  L       
Sbjct: 236 --GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDL------- 285

Query: 648 VLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFH 681
                              L  L  L L  N ++
Sbjct: 286 ----------------FTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.4 bits (183), Expect = 5e-14
 Identities = 57/280 (20%), Positives = 93/280 (33%), Gaps = 64/280 (22%)

Query: 478 QDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNL 537
            ++ S +  +   +  ++P  I      +  Y+NL  N I               ++++ 
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQGIPS----NTRYLNLMENNIQM-------------IQADT 94

Query: 538 LQGPLPVPPSSLRVLLISNNQFTGEIIHSI-----CDIIALDVLDLSNNRLNGTIPECIG 592
            +  L      L VL +  N      I  I       + +L+ L+L +N L   IP   G
Sbjct: 95  FRH-LH----HLEVLQLGRNS-----IRQIEVGAFNGLASLNTLELFDNWLT-VIPS--G 141

Query: 593 NFS--PSLSVLDLRNNRLNGSIPGTFAESNWLRSLNL-NNNELGGAIPQSLVNCTKVEVL 649
            F     L  L LRNN +       F     L  L+L    +L      +      ++ L
Sbjct: 142 AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201

Query: 650 DIGNIKINDAFPYWLGNLPELQVLVLRSNKF--------------------HGSVREFEP 689
           ++G   I D  P  L  L  L+ L +  N F                    +  V   E 
Sbjct: 202 NLGMCNIKD-MPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259

Query: 690 K--ESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSAD 727
              +    L  L+L+ NN S  LP      L  +  +   
Sbjct: 260 NAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.5 bits (178), Expect = 2e-13
 Identities = 51/242 (21%), Positives = 95/242 (39%), Gaps = 29/242 (11%)

Query: 92  WLHGN----IPTNTSLFHLLHLQTLNLSHNDFDYSEISSG-FSRFRNLTHFSLSDSNINC 146
            L  N    I  +T   HL HL+ L L  N     +I  G F+   +L    L D+ +  
Sbjct: 81  NLMENNIQMIQADT-FRHLHHLEVLQLGRNSI--RQIEVGAFNGLASLNTLELFDNWL-- 135

Query: 147 KIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFH-LPNPQMIRLSQNP 205
                      + +   + + LS  L  L L +  ++ + P   F+ +P+   + L +  
Sbjct: 136 -----------TVIPSGAFEYLSK-LRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELK 182

Query: 206 SLAGKFPANNWT--SPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGN 263
            L        +     ++YL++   +  ++P+ +  L  L  L +  + F    P S   
Sbjct: 183 KLE-YISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHG 240

Query: 264 LTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNN 322
           L+ L  L +M++  S    ++   L  L  L+L+ N+      D+F  L  +    L +N
Sbjct: 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

Query: 323 QL 324
             
Sbjct: 301 PW 302

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  104 bits (261), Expect = 9e-25
 Identities = 54/226 (23%), Positives = 85/226 (37%), Gaps = 15/226 (6%)

Query: 226 SETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSL 285
            +     +P  I       R+ L  ++      AS      LT+L L  N  +    ++ 
Sbjct: 19  PQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76

Query: 286 SNLVQLTYLDLSSNSFFGEIP-DIF-NLTQVSFFDLSNNQLAGPIPSHG-SRLQNLVLIR 342
           + L  L  LDLS N+    +    F  L ++    L    L   +       L  L  + 
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLY 135

Query: 343 LNNNSFSGTIPSWLFS-LPLLEYVRLSDNQLSGHIDEF---PSKSLQNIYLSNNRLQGSI 398
           L +N+    +P   F  L  L ++ L  N++S  + E       SL  + L  NR+   +
Sbjct: 136 LQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA-HV 192

Query: 399 PSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSL 443
               F  L  L  L L +NN S +      A L  L+YL L+ N  
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALP-TEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.7 bits (205), Expect = 2e-17
 Identities = 51/278 (18%), Positives = 84/278 (30%), Gaps = 54/278 (19%)

Query: 568 CDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNL 627
           C              L   +P        +   + L  NR++     +F     L  L L
Sbjct: 8   CYNEPKVTTSCPQQGLQ-AVPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWL 63

Query: 628 NNNELGGAIPQSLVNCTKVEVLDI-GNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVRE 686
           ++N L      +      +E LD+  N ++    P     L  L  L L        +  
Sbjct: 64  HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-EL-- 120

Query: 687 FEPKESF---PKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSV 743
                 F     L+ L L  N     LP+    +L  + ++     ++  +         
Sbjct: 121 --GPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSV--------- 168

Query: 744 VVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSL 803
                                      F G        LHSL  L L  N      P + 
Sbjct: 169 -----------------------PERAFRG--------LHSLDRLLLHQNRVAHVHPHAF 197

Query: 804 GNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHN 841
            +L +L +L L +NN++    + L  L +L  L L+ N
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 53/250 (21%), Positives = 80/250 (32%), Gaps = 55/250 (22%)

Query: 480 ELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQ 539
               + L  N+        IS +   S                   +NL  L L SN+L 
Sbjct: 33  ASQRIFLHGNR--------ISHVPAASFRAC---------------RNLTILWLHSNVLA 69

Query: 540 GPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLS 599
                         I    FTG        +  L+ LDLS+N    ++     +    L 
Sbjct: 70  -------------RIDAAAFTG--------LALLEQLDLSDNAQLRSVDPATFHGLGRLH 108

Query: 600 VLDLRNNRLNGSIP-GTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKIND 658
            L L    L   +  G F     L+ L L +N L      +  +   +  L +   +I+ 
Sbjct: 109 TLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167

Query: 659 AFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESF---PKLRILDLSINNFSGYLPERFL 715
                   L  L  L+L  N+    V       +F    +L  L L  NN S  LP   L
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRVA-HV----HPHAFRDLGRLMTLYLFANNLS-ALPTEAL 221

Query: 716 ENLNAMRNVS 725
             L A++ + 
Sbjct: 222 APLRALQYLR 231

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 51/249 (20%), Positives = 83/249 (33%), Gaps = 49/249 (19%)

Query: 84  ISLDLSCSWLHGN----IPTNTSLFHLLHLQTLNLSHNDFDYSEISSG-FSRFRNLTHFS 138
           I       +LHGN    +P   S     +L  L L  N    + I +  F+    L    
Sbjct: 30  IPAASQRIFLHGNRISHVPAA-SFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLD 86

Query: 139 LSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIF-HLPNPQ 197
           LSD   N ++          +V   +   L   L +L L  C LQ      +F  L    
Sbjct: 87  LSD---NAQL---------RSVDPATFHGL-GRLHTLHLDRCGLQ-ELGPGLFRGLAA-- 130

Query: 198 MIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSI-GNLKLLGRLMLGYSQFVGP 256
                                 ++YL + + +   LPD    +L  L  L L  ++    
Sbjct: 131 ----------------------LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168

Query: 257 VPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVS 315
              +   L  L  L L  N  +   P +  +L +L  L L +N+      +    L  + 
Sbjct: 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228

Query: 316 FFDLSNNQL 324
           +  L++N  
Sbjct: 229 YLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.9 bits (164), Expect = 4e-12
 Identities = 55/278 (19%), Positives = 84/278 (30%), Gaps = 79/278 (28%)

Query: 546 PSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFS--PSLSVLDL 603
           P++ + + +  N+ +     S      L +L L +N L   I      F+    L  LDL
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDA--AAFTGLALLEQLDL 87

Query: 604 RNNRLNGSIP-GTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPY 662
            +N    S+   TF     L +L+L+   L   +                        P 
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELG-----------------------PG 123

Query: 663 WLGNLPELQVLVLRSNKFHGSVREFEPKESF---PKLRILDLSINNFSGYLPERFLENLN 719
               L  LQ L L+ N    ++    P ++F     L  L L  N  S  +PER    L 
Sbjct: 124 LFRGLAALQYLYLQDNALQ-AL----PDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGL- 176

Query: 720 AMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVI 779
                      L  L            L    +                + F        
Sbjct: 177 ---------HSLDRL-----------LLHQNRVAH-----------VHPHAFRD------ 199

Query: 780 GKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSN 817
             L  L  L L  N+ +     +L  L  L+ L L+ N
Sbjct: 200 --LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 48/217 (22%), Positives = 81/217 (37%), Gaps = 41/217 (18%)

Query: 460 YLSLSACNISAFP-RFLRTQDELSYLDLSENKIDGQIPSWISE---IGKDSLSYVNLSHN 515
            + L    IS  P    R    L+ L L  N +     + I      G   L  ++LS N
Sbjct: 36  RIFLHGNRISHVPAASFRACRNLTILWLHSNVL-----ARIDAAAFTGLALLEQLDLSDN 90

Query: 516 FITKMKQIPW------KNLGYLDLRSNLLQGPLPVPP------SSLRVLLISNNQFTGEI 563
              +++ +          L  L L    LQ    + P      ++L+ L + +N      
Sbjct: 91  --AQLRSVDPATFHGLGRLHTLHLDRCGLQE---LGPGLFRGLAALQYLYLQDNA----- 140

Query: 564 IHSI-----CDIIALDVLDLSNNRLNGTIPECIGNFS--PSLSVLDLRNNRLNGSIPGTF 616
           + ++      D+  L  L L  NR++ ++PE    F    SL  L L  NR+    P  F
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRIS-SVPE--RAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 617 AESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGN 653
            +   L +L L  N L     ++L     ++ L + +
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.5 bits (124), Expect = 5e-07
 Identities = 30/164 (18%), Positives = 48/164 (29%), Gaps = 21/164 (12%)

Query: 689 PKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLK 748
           P       + + L  N  S ++P         +  +      L  +              
Sbjct: 27  PVGIPAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAA--------AFT 77

Query: 749 GTEIEMQKILTVFTTIDFSSNGFDGEIS-QVIGKLHSLRLLNLSHNHFTGQIPSSLGNLA 807
           G        L +   +D S N     +       L  L  L+L         P     LA
Sbjct: 78  G--------LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 808 KLESLDLSSNNVAGKIPK-PLTSLTSLSVLNLSHNRLDGPIPHG 850
            L+ L L  N +   +P      L +L+ L L  NR+   +P  
Sbjct: 130 ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISS-VPER 171

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  104 bits (261), Expect = 3e-24
 Identities = 56/273 (20%), Positives = 101/273 (36%), Gaps = 21/273 (7%)

Query: 257 VPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVS 315
           +P+ L     +  L L +N  +    S L   V L  L L+SN       D F +L  + 
Sbjct: 46  IPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103

Query: 316 FFDLSNNQLAGPIPSHG-SRLQNLVLIRLNNNSFSGTIPSWLFS-LPLLEYVRLSDNQLS 373
             DLS N L+  + S     L +L  + L  N +     + LFS L  L+ +R+ +    
Sbjct: 104 HLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162

Query: 374 GHIDE--FPS-KSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAK 429
             I    F     L+ + +  + LQ S      + + N++ L L       +        
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILL-LEIFVDV 220

Query: 430 LIKLKYLYLSHNSLSLGNTFKIDS-------PFPKFSYLSLSACNISAFPRFLRTQDELS 482
              ++ L L    L   +  ++ +           F  + ++  ++    + L     L 
Sbjct: 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL 280

Query: 483 YLDLSENKIDGQIPSWISEIGKDSLSYVNLSHN 515
            L+ S N++   +P  I +    SL  + L  N
Sbjct: 281 ELEFSRNQLKS-VPDGIFD-RLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 95.2 bits (237), Expect = 4e-21
 Identities = 70/328 (21%), Positives = 129/328 (39%), Gaps = 44/328 (13%)

Query: 318 DLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHID 377
             S+  L   IPS  +  + +  + L+NN  +    S L     L+ + L+ N ++  I+
Sbjct: 37  KGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIE 92

Query: 378 E--FPS-KSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAKLIKL 433
           E  F S  SL+++ LS N L  ++ SS F+ L +LT L L  N +  + E  +F+ L KL
Sbjct: 93  EDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151

Query: 434 KYLYLSHN----SLSLGNTFKIDSPFPKFSYLSLSACNISAFPRF-LRTQDELSYLDLSE 488
           + L + +      +     F   +       L + A ++ ++    L++   +S+L L  
Sbjct: 152 QILRVGNMDTFTKIQRK-DF---AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207

Query: 489 NKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSS 548
            +                     L   F+     +    L   DL +           +S
Sbjct: 208 KQHI------------------LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249

Query: 549 ------LRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLD 602
                  R + I++     +++  +  I  L  L+ S N+L  ++P+ I +   SL  + 
Sbjct: 250 LIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIW 307

Query: 603 LRNNRLNGSIPGTFAESNWLRSLNLNNN 630
           L  N  + S P     S WL   +    
Sbjct: 308 LHTNPWDCSCPRIDYLSRWLNKNSQKEQ 335

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 49/284 (17%), Positives = 100/284 (35%), Gaps = 31/284 (10%)

Query: 575 VLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGG 634
           +   S+  LN +IP      + ++  LDL NNR+             L++L L +N +  
Sbjct: 35  ICKGSSGSLN-SIPS---GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT 90

Query: 635 AIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFP 694
               S  +   +E LD+    +++    W   L  L  L L  N +  ++ E        
Sbjct: 91  IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLT 149

Query: 695 KLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEM 754
           KL+IL +   +    +  +    L  +  +  D   L+    +        +LK      
Sbjct: 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK--------SLKS----- 196

Query: 755 QKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTG----QIPS----SLGNL 806
              +   + +          +   +    S+  L L           ++ +    SL   
Sbjct: 197 ---IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKK 253

Query: 807 AKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHG 850
               ++ ++  ++  ++ K L  ++ L  L  S N+L   +P G
Sbjct: 254 FTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDG 295

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.8 bits (197), Expect = 5e-16
 Identities = 51/275 (18%), Positives = 100/275 (36%), Gaps = 37/275 (13%)

Query: 92  WLHGN----IPTNTSLFHLLHLQTLNLSHNDFDYSEISSG-FSRFRNLTHFSLSDSNINC 146
            L  N    I  +  L   ++LQ L L+ N    + I    FS   +L H  LS + ++ 
Sbjct: 58  DLSNNRITYISNSD-LQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNYLS- 113

Query: 147 KIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIF-HLPNPQMIRLSQNP 205
            +                L +L    T L+L     +     ++F HL   Q++R+    
Sbjct: 114 NLSSS---------WFKPLSSL----TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160

Query: 206 SLAGKFPANNWTSPI--EYLDVSETSFSELPD-SIGNLKLLGRLMLGYSQFVGPVPASLG 262
           +   K    ++      E L++  +        S+ +++ +  L+L   Q +  +   + 
Sbjct: 161 TFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD 219

Query: 263 NLTQLTLLHLMHNNFSGHIPSSLS--------NLVQLTYLDLSSNSFFGEIPDIFNLTQV 314
             + +  L L   +      S LS               + ++  S F  +  +  ++ +
Sbjct: 220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL 279

Query: 315 SFFDLSNNQLAGPIPSHG-SRLQNLVLIRLNNNSF 348
              + S NQL   +P     RL +L  I L+ N +
Sbjct: 280 LELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 78.2 bits (193), Expect = 1e-15
 Identities = 61/306 (19%), Positives = 111/306 (36%), Gaps = 49/306 (16%)

Query: 546 PSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRN 605
             +++ L +SNN+ T      +   + L  L L++N +N TI E   +   SL  LDL  
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY 109

Query: 606 NRLNGSIPGTFAESNWLRSLNLNNNEL----GGAIPQSLVNCTKVEVLDIGNIKINDAFP 661
           N L+      F   + L  LNL  N        ++   L     + V +           
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN--MDTFTKIQR 167

Query: 662 YWLGNLPELQVLVLRSNKFHGSVREFEPK--ESFPKLRILDLSINNFSGYLPERFLENLN 719
                L  L+ L + ++      + +EPK  +S   +  L L +      L E F++  +
Sbjct: 168 KDFAGLTFLEELEIDASDL----QSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTS 222

Query: 720 AMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVI 779
                      +  L            L+ T+++     +  +T + +S          +
Sbjct: 223 ----------SVECL-----------ELRDTDLDTFH-FSELSTGETNS----------L 250

Query: 780 GKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKP-LTSLTSLSVLNL 838
            K  + R + ++      Q+   L  ++ L  L+ S N +   +P      LTSL  + L
Sbjct: 251 IKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWL 308

Query: 839 SHNRLD 844
             N  D
Sbjct: 309 HTNPWD 314

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  102 bits (256), Expect = 5e-23
 Identities = 91/522 (17%), Positives = 164/522 (31%), Gaps = 127/522 (24%)

Query: 381 SKSLQNIYLSNNRLQGSIPSSIFELV-NLTDLQLDSNNFS-----GIAEPYMFAKLIKLK 434
           S  +Q++ +    L  +  + +  L+     ++LD    +      I+          L 
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS--ALRVNPALA 59

Query: 435 YLYLSHNSLS------LGNTFKIDSPFPKFSYLSLSACNIS-----AFPRFLRTQDELSY 483
            L L  N L       +    +  +P  K   LSL  C ++          LRT   L  
Sbjct: 60  ELNLRSNELGDVGVHCVLQGLQ--TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117

Query: 484 LDLSENKIDGQIPSWISEIGKD---SLSYVNLSHNFITK--MKQI-----PWKNLGYLDL 533
           L LS+N +       + E   D    L  + L +  ++    + +        +   L +
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177

Query: 534 RSN--------LLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIA----LDVLDLSNN 581
            +N        +L   L   P  L  L + +   T +    +C I+A    L  L L +N
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237

Query: 582 RLNGT----IPECIGNFSPSLSVLDLRNNRLN----GSIPGTFAESNWLRSLNLNNNELG 633
           +L       +   + + S  L  L +    +     G +         L+ L+L  NELG
Sbjct: 238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297

Query: 634 G----AIPQSLVNC-TKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFE 688
                 + ++L+    ++E L + +     A      +       VL  N          
Sbjct: 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS-------VLAQN---------- 340

Query: 689 PKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLK 748
                  L  L +S N                      D G +R L +            
Sbjct: 341 -----RFLLELQISNNRLE-------------------DAG-VRELCQG----------- 364

Query: 749 GTEIEMQKILTVFTTIDFSSNGFDGE----ISQVIGKLHSLRLLNLSHNHFTGQIPSSLG 804
                + +  +V   +  +           ++  +   HSLR L+LS+N         L 
Sbjct: 365 -----LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 419

Query: 805 -----NLAKLESLDLSSNNVAGKIPKPLTSL----TSLSVLN 837
                    LE L L     + ++   L +L     SL V++
Sbjct: 420 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  100 bits (252), Expect = 2e-22
 Identities = 77/457 (16%), Positives = 145/457 (31%), Gaps = 95/457 (20%)

Query: 433 LKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNIS-----AFPRFLRTQDELSYLDLS 487
           ++ L +    LS     ++     +   + L  C ++          LR    L+ L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 488 ENKIDGQIPSWISEIGKD---SLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPV 544
            N++       + +  +     +  ++L +  +T          G   L S L   P   
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT--------GAGCGVLSSTLRTLP--- 113

Query: 545 PPSSLRVLLISNNQFTGEIIHSICDII-----ALDVLDLSNNRLNGTIPECIGN---FSP 596
              +L+ L +S+N      +  +C+ +      L+ L L    L+    E + +     P
Sbjct: 114 ---TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP 170

Query: 597 SLSVLDLRNNRLNGS----IPGTFAESNW-LRSLNLNNNELG----GAIPQSLVNCTKVE 647
               L + NN +N +    +     +S   L +L L +  +       +   + +   + 
Sbjct: 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230

Query: 648 VLDIGNIKINDA-----FPYWLGNLPELQVLVLRSNKFH--GSVREFEPKESFPKLRILD 700
            L +G+ K+ D       P  L     L+ L +        G         +   L+ L 
Sbjct: 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 290

Query: 701 LSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTV 760
           L+ N                      DEG  R L E                 + +    
Sbjct: 291 LAGNELG-------------------DEG-ARLLCET----------------LLEPGCQ 314

Query: 761 FTTIDFSSNGFDGE----ISQVIGKLHSLRLLNLSHNHFTGQIPSSLG-----NLAKLES 811
             ++   S  F        S V+ +   L  L +S+N         L        + L  
Sbjct: 315 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 374

Query: 812 LDLSSNNV----AGKIPKPLTSLTSLSVLNLSHNRLD 844
           L L+  +V       +   L +  SL  L+LS+N L 
Sbjct: 375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 81.2 bits (201), Expect = 4e-16
 Identities = 87/540 (16%), Positives = 158/540 (29%), Gaps = 140/540 (25%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHN---DFDYSEISSGFSRFRNLTHFS 138
           ++ SLD+ C  L  +      L  L   Q + L      +    +ISS       L   +
Sbjct: 4   DIQSLDIQCEEL-SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 139 LSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQM 198
           L  + +                VL  L+  S  +  LSL +C L G     +        
Sbjct: 63  LRSNELGD---------VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST----- 108

Query: 199 IRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVP 258
             L   P+L             + L +S+    +       L+LL   +           
Sbjct: 109 --LRTLPTL-------------QELHLSDNLLGD-----AGLQLLCEGL----------- 137

Query: 259 ASLGNLTQLTLLHLMHNNFS----GHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQV 314
             L    +L  L L + + S      + S L        L +S+N               
Sbjct: 138 --LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-IN----------- 183

Query: 315 SFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFS----GTIPSWLFSLPLLEYVRLSDN 370
              +     L   +     +L+ L   +L +   +      +   + S   L  + L  N
Sbjct: 184 ---EAGVRVLCQGLKDSPCQLEAL---KLESCGVTSDNCRDLCGIVASKASLRELALGSN 237

Query: 371 QLS-------GHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAE 423
           +L              PS  L+ +++                       + +     +  
Sbjct: 238 KLGDVGMAELCPGLLHPSSRLRTLWIWEC-------------------GITAKGCGDLCR 278

Query: 424 PYMFAKLIKLKYLYLSHNSLS------LGNTFKIDSPFPKFSYLSLSACNIS-----AFP 472
             +      LK L L+ N L       L  T     P  +   L + +C+ +      F 
Sbjct: 279 --VLRAKESLKELSLAGNELGDEGARLLCETLL--EPGCQLESLWVKSCSFTAACCSHFS 334

Query: 473 RFLRTQDELSYLDLSENKIDGQIPSWISEIGKD---SLSYVNLSHNFITKMKQIPWKNLG 529
             L     L  L +S N+++      + +        L  + L+   ++        +  
Sbjct: 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS--------DSS 386

Query: 530 YLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIA-----LDVLDLSNNRLN 584
              L + LL         SLR L +SNN      I  + + +      L+ L L +   +
Sbjct: 387 CSSLAATLLANH------SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 76.2 bits (188), Expect = 1e-14
 Identities = 95/567 (16%), Positives = 164/567 (28%), Gaps = 166/567 (29%)

Query: 132 RNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIF 191
            ++    +    ++     +  + ++  ++             + L DC L      +I 
Sbjct: 3   LDIQSLDIQCEELS-----DARWAELLPLL--------QQCQVVRLDDCGLTEARCKDIS 49

Query: 192 HLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYS 251
                    L  NP+L               L++      +       +  + +  L   
Sbjct: 50  SA-------LRVNPAL-------------AELNLRSNELGD-----VGVHCVLQ-GLQTP 83

Query: 252 QFVGPVPASLGNLTQLTLLHLMHNNFS----GHIPSSLSNLVQLTYLDLSSNSFFGEIPD 307
                         ++  L L +   +    G + S+L  L  L  L LS N        
Sbjct: 84  S------------CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-------- 123

Query: 308 IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRL 367
              L       L    L         RL+ L   +L   S S      L S+       L
Sbjct: 124 --LLGDAGLQLLCEGLL-----DPQCRLEKL---QLEYCSLSAASCEPLASV-------L 166

Query: 368 SDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFEL-----VNLTDLQLDSNNFS--- 419
                            + + +SNN +  +    + +        L  L+L+S   +   
Sbjct: 167 RAK-----------PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215

Query: 420 --GIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRT 477
              +    + A    L+ L L  N L                   +    +      L  
Sbjct: 216 CRDLCG--IVASKASLRELALGSNKLG-----------------DVGMAELCP--GLLHP 254

Query: 478 QDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNL 537
              L  L + E          I+  G   L  V L             ++L  L L  N 
Sbjct: 255 SSRLRTLWIWECG--------ITAKGCGDLCRV-LRAK----------ESLKELSLAGNE 295

Query: 538 LQGP--------LPVPPSSLRVLLISNNQFTGEIIHSICDIIA----LDVLDLSNNRLNG 585
           L           L  P   L  L + +  FT         ++A    L  L +SNNRL  
Sbjct: 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355

Query: 586 T----IPECIGNFSPSLSVLDLRNNRLN----GSIPGTFAESNWLRSLNLNNNELGGAIP 637
                + + +G     L VL L +  ++     S+  T   ++ LR L+L+NN LG A  
Sbjct: 356 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 415

Query: 638 QSL-----VNCTKVEVLDIGNIKINDA 659
             L          +E L + +I  ++ 
Sbjct: 416 LQLVESVRQPGCLLEQLVLYDIYWSEE 442

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  100 bits (250), Expect = 5e-22
 Identities = 54/308 (17%), Positives = 95/308 (30%), Gaps = 56/308 (18%)

Query: 335 LQNLVLIRLNNNSFSGTIP-------SWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNI 387
           L       L+ NSF  TI        S             + N+    + E        +
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSEL 64

Query: 388 YLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGN 447
            L+   L  S+P ++     +T L++  N    +  P + A    L+YL    N LS   
Sbjct: 65  QLNRLNLS-SLPDNLPP--QITVLEITQNALISL--PELPA---SLEYLDACDNRLS--- 113

Query: 448 TFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSL 507
              +        +L +    ++  P        L Y++   N++   +P   +       
Sbjct: 114 --TLPELPASLKHLDVDNNQLTMLPELPAL---LEYINADNNQL-TMLPELPT------- 160

Query: 508 SYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTG---EII 564
                              +L  L +R+N L   LP  P SL  L +S N         +
Sbjct: 161 -------------------SLEVLSVRNNQLTF-LPELPESLEALDVSTNLLESLPAVPV 200

Query: 565 HSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRS 624
            +              NR+   IPE I +       + L +N L+  I  + ++      
Sbjct: 201 RNHHSEETEIFFRCRENRIT-HIPENILSL-DPTCTIILEDNPLSSRIRESLSQQTAQPD 258

Query: 625 LNLNNNEL 632
            +      
Sbjct: 259 YHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 88.9 bits (220), Expect = 2e-18
 Identities = 51/283 (18%), Positives = 103/283 (36%), Gaps = 25/283 (8%)

Query: 257 VPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSF 316
             ++     +  L     N     +   L  + Q + L L+  +    +PD     Q++ 
Sbjct: 29  YFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNL-SSLPDNL-PPQITV 84

Query: 317 FDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHI 376
            +++ N L   +P   + L+ L      +N  S T+P    SL  L    + +NQL+  +
Sbjct: 85  LEITQNAL-ISLPELPASLEYL---DACDNRLS-TLPELPASLKHL---DVDNNQLT-ML 135

Query: 377 DEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYL 436
            E P+  L+ I   NN+L   +P       +L  L + +N  + + E         L+ L
Sbjct: 136 PELPA-LLEYINADNNQLT-MLPELP---TSLEVLSVRNNQLTFLPE-----LPESLEAL 185

Query: 437 YLSHNSL-SLGNT-FKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQ 494
            +S N L SL     +         +       I+  P  + + D    + L +N +  +
Sbjct: 186 DVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSR 245

Query: 495 IPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNL 537
           I   +S+       +    +  ++  +Q          + +  
Sbjct: 246 IRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWF 288

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 85.8 bits (212), Expect = 2e-17
 Identities = 51/322 (15%), Positives = 102/322 (31%), Gaps = 75/322 (23%)

Query: 548 SLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNR 607
              +   + N+    +    C I     L L+   L+ ++P+ +    P ++VL++  N 
Sbjct: 38  KQALPGENRNEAVSLL--KECLINQFSELQLNRLNLS-SLPDNLP---PQITVLEITQNA 91

Query: 608 LNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNL 667
           L  S+P   A    L  L+  +N L   +P+   +      LD+ N ++    P     L
Sbjct: 92  L-ISLPELPAS---LEYLDACDNRLS-TLPELPASLKH---LDVDNNQLT-MLPELPALL 142

Query: 668 PELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSAD 727
              + +   +N+           E    L +L +  N  + +LPE   E+L         
Sbjct: 143 ---EYINADNNQLT------MLPELPTSLEVLSVRNNQLT-FLPE-LPESL--------- 182

Query: 728 EGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLR- 786
                                               +D S+N  +  +  V  + H    
Sbjct: 183 ----------------------------------EALDVSTNLLE-SLPAVPVRNHHSEE 207

Query: 787 ---LLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRL 843
                    N  T  IP ++ +L    ++ L  N ++ +I + L+  T+    +      
Sbjct: 208 TEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

Query: 844 DGPIPHGPQFNTFQEDSYIGNL 865
                     +    D+     
Sbjct: 267 SMSDGQQNTLHRPLADAVTAWF 288

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 85.0 bits (210), Expect = 3e-17
 Identities = 57/349 (16%), Positives = 105/349 (30%), Gaps = 53/349 (15%)

Query: 86  LDLSCSWLHGNIP-TNTSLFHLL-HLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSN 143
             LS +  +  I  T    F      +   L   + + +            +   L+  N
Sbjct: 11  FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLN 70

Query: 144 INCKIPYEI----SFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMI 199
           ++  +P  +    + L+++   L SL  L +SL  L   D  L    P     L      
Sbjct: 71  LS-SLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLS-TLPELPASL------ 122

Query: 200 RLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPA 259
                                ++LDV     + LP+    L+    +    +Q    +P 
Sbjct: 123 ---------------------KHLDVDNNQLTMLPELPALLE---YINADNNQLTM-LPE 157

Query: 260 SLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQ----V 314
              +L  L++     NN    +P    +L     LD+S+N     +P             
Sbjct: 158 LPTSLEVLSV----RNNQLTFLPELPESL---EALDVSTN-LLESLPAVPVRNHHSEETE 209

Query: 315 SFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSG 374
            FF    N++   IP +   L     I L +N  S  I   L                S 
Sbjct: 210 IFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSM 268

Query: 375 HIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAE 423
              +  +               +  S + ++ +  + +  +N FS   +
Sbjct: 269 SDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLD 317

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 79.6 bits (196), Expect = 2e-15
 Identities = 60/362 (16%), Positives = 108/362 (29%), Gaps = 80/362 (22%)

Query: 546 PSSLRVLLISNN--QFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDL 603
             SL      N       +   +        +   + N     + EC+ N     S L L
Sbjct: 10  NFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN---QFSELQL 66

Query: 604 RNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYW 663
               L+ S+P        +  L +  N L  ++P+   +   +E LD  + +++   P  
Sbjct: 67  NRLNLS-SLPDNLPPQ--ITVLEITQNALI-SLPELPAS---LEYLDACDNRLS-TLPEL 118

Query: 664 LGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRN 723
             +L  L    + +N+         P E    L  ++   N  +  LPE           
Sbjct: 119 PASLKHLD---VDNNQL-----TMLP-ELPALLEYINADNNQLT-MLPELP--------- 159

Query: 724 VSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLH 783
                  L  L                                 +N    +++ +     
Sbjct: 160 -----TSLEVL------------------------------SVRNN----QLTFLPELPE 180

Query: 784 SLRLLNLSHNHFTGQIPSSLGNLAKLES----LDLSSNNVAGKIPKPLTSLTSLSVLNLS 839
           SL  L++S N     +P+        E          N +   IP+ + SL     + L 
Sbjct: 181 SLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238

Query: 840 HNRLDGPIPHGPQFNTFQEDSYIGNLGL---CGFPLTKKCGNDEAPTTFHEEDEEAESSS 896
            N L   I       T Q D +   +      G   T      +A T +  E+++++ S 
Sbjct: 239 DNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQ 298

Query: 897 SW 898
            W
Sbjct: 299 IW 300

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.1 bits (135), Expect = 3e-08
 Identities = 47/317 (14%), Positives = 99/317 (31%), Gaps = 33/317 (10%)

Query: 108 HLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLK---MSTVVLDS 164
            L+ L+   N      +S+      +L H  + ++ +   +P   + L+        L  
Sbjct: 101 SLEYLDACDN-----RLSTLPELPASLKHLDVDNNQLT-MLPELPALLEYINADNNQLTM 154

Query: 165 LKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQN-----PSLAGKFPANNWTSP 219
           L  L +SL  LS+ +  L    P     L   + + +S N     P++  +    +    
Sbjct: 155 LPELPTSLEVLSVRNNQLTF-LPELPESL---EALDVSTNLLESLPAVPVRNH--HSEET 208

Query: 220 IEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSG 279
             +    E   + +P++I +L     ++L  +     +  SL   T     H        
Sbjct: 209 EIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG--PRIYF 266

Query: 280 HIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLV 339
            +     N +     D  +  F        +    +F    +           S   +  
Sbjct: 267 SMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSA- 325

Query: 340 LIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDE-------FPSKSLQNIYLSNN 392
               N + F   + +WL  L     +R     ++    E           +L+   L + 
Sbjct: 326 ---RNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQ 382

Query: 393 RLQGSIPSSIFELVNLT 409
             +G   +    L++L 
Sbjct: 383 ASEGLFDNDTGALLSLG 399

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 99.1 bits (247), Expect = 5e-22
 Identities = 61/235 (25%), Positives = 102/235 (43%), Gaps = 19/235 (8%)

Query: 265 TQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQ 323
           T   LL+L  N       +S  +L  L  L LS N         F  L  ++  +L +N+
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 324 LAGPIPSHG-SRLQNLVLIRLNNNSFSGTIPSWLFS-LPLLEYVRLSD-NQLSGHIDE-- 378
           L   IP+     L  L  + L NN    +IPS+ F+ +P L  + L +  +LS +I E  
Sbjct: 124 LTT-IPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLS-YISEGA 180

Query: 379 FPS-KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLY 437
           F    +L+ + L+   L+  IP ++  L+ L +L L  N+ S I  P  F  L+ L+ L+
Sbjct: 181 FEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAI-RPGSFQGLMHLQKLW 237

Query: 438 LSHNSLSL--GNTFKIDSPFPKFSYLSLSACNISAFPR-FLRTQDELSYLDLSEN 489
           +  + + +   N F           ++L+  N++  P         L  + L  N
Sbjct: 238 MIQSQIQVIERNAF---DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.8 bits (236), Expect = 1e-20
 Identities = 55/273 (20%), Positives = 94/273 (34%), Gaps = 58/273 (21%)

Query: 576 LDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGA 635
           +      L   +P+     S +  +L+L  N++      +F     L  L L+ N +   
Sbjct: 48  VICVRKNLR-EVPD---GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI 103

Query: 636 IPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESF-- 693
              +      +  L++ + ++          L +L+ L LR+N    S+    P  +F  
Sbjct: 104 EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SI----PSYAFNR 158

Query: 694 -PKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEI 752
            P LR LDL       Y+ E   E L            LRYL                  
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGL----------SNLRYL------------------ 190

Query: 753 EMQKILTVFTTIDFSSNGFDGEISQV--IGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLE 810
                       + +       + ++  +  L  L  L+LS NH +   P S   L  L+
Sbjct: 191 ------------NLAMC----NLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 811 SLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRL 843
            L +  + +         +L SL  +NL+HN L
Sbjct: 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.4 bits (222), Expect = 8e-19
 Identities = 56/283 (19%), Positives = 90/283 (31%), Gaps = 50/283 (17%)

Query: 383 SLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNS 442
               +      L+  +P  I    N   L L  N    I +   F  L  L+ L LS N 
Sbjct: 44  QFSKVICVRKNLR-EVPDGIST--NTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRNH 99

Query: 443 LSL--GNTFKIDSPFPKFSYLSLSACNISAFPR-FLRTQDELSYLDLSENKIDGQIPSWI 499
           +       F   +     + L L    ++  P        +L  L L  N I        
Sbjct: 100 IRTIEIGAF---NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI-------- 148

Query: 500 SEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDL-RSNLLQGPLPVPP------SSLRVL 552
             I   + + +                +L  LDL     L     +        S+LR L
Sbjct: 149 ESIPSYAFNRI---------------PSLRRLDLGELKRLSY---ISEGAFEGLSNLRYL 190

Query: 553 LISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFS--PSLSVLDLRNNRLNG 610
            ++        I ++  +I LD LDLS N L+  I    G+F     L  L +  +++  
Sbjct: 191 NLAMCNLRE--IPNLTPLIKLDELDLSGNHLS-AIRP--GSFQGLMHLQKLWMIQSQIQV 245

Query: 611 SIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGN 653
                F     L  +NL +N L             +E + + +
Sbjct: 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.7 bits (215), Expect = 6e-18
 Identities = 53/239 (22%), Positives = 99/239 (41%), Gaps = 15/239 (6%)

Query: 166 KNLSSSLTSLSLSDCILQGNFPINIF-HLPNPQMIRLSQNP--SL-AGKFPANNWTSPIE 221
             +S++   L+L +  +Q    +N F HL + ++++LS+N   ++  G F      + + 
Sbjct: 60  DGISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG---LANLN 115

Query: 222 YLDVSETSFSELPDSI-GNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGH 280
            L++ +   + +P+     L  L  L L  +        +   +  L  L L       +
Sbjct: 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY 175

Query: 281 IPS-SLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLV 339
           I   +   L  L YL+L+  +   EIP++  L ++   DLS N L+   P     L +L 
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNL-REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 340 LIRLNNNSFSGTIPSWLFS-LPLLEYVRLSDNQLSG-HIDEFPS-KSLQNIYLSNNRLQ 395
            + +  +     I    F  L  L  + L+ N L+    D F     L+ I+L +N   
Sbjct: 235 KLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.4 bits (170), Expect = 2e-12
 Identities = 54/243 (22%), Positives = 96/243 (39%), Gaps = 31/243 (12%)

Query: 92  WLHGN----IPTNTSLFHLLHLQTLNLSHNDFDYSEISSG-FSRFRNLTHFSLSDSNINC 146
            LH N    I  N+   HL HL+ L LS N      I  G F+   NL    L D+ +  
Sbjct: 70  NLHENQIQIIKVNS-FKHLRHLEILQLSRNHI--RTIEIGAFNGLANLNTLELFDNRL-- 124

Query: 147 KIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFH-LPNPQMIRLSQNP 205
                      +T+   +   LS  L  L L +  ++ + P   F+ +P+ + + L +  
Sbjct: 125 -----------TTIPNGAFVYLSK-LKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELK 171

Query: 206 SLAGKFPAN---NWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLG 262
            L+           ++ + YL+++  +  E+P+ +  L  L  L L  +      P S  
Sbjct: 172 RLS-YISEGAFEGLSN-LRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQ 228

Query: 263 NLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSN 321
            L  L  L ++ +       ++  NL  L  ++L+ N+      D+F  L  +    L +
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

Query: 322 NQL 324
           N  
Sbjct: 289 NPW 291

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 92.9 bits (231), Expect = 8e-21
 Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 14/190 (7%)

Query: 257 VPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSF 316
           +P  L      T+LHL  N       ++L    +LT L+L       ++     L  +  
Sbjct: 25  LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVDGTLPVLGT 81

Query: 317 FDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLF-SLPLLEYVRLSDNQLSGH 375
            DLS+NQL   +P  G  L  L ++ ++ N  + ++P      L  L+ + L  N+L   
Sbjct: 82  LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-T 138

Query: 376 IDE--FPS-KSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAKLI 431
           +          L+ + L+NN L   +P+ +   L NL  L L  N+   I  P  F    
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTI--PKGFFGSH 195

Query: 432 KLKYLYLSHN 441
            L + +L  N
Sbjct: 196 LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 72.8 bits (179), Expect = 4e-14
 Identities = 52/213 (24%), Positives = 80/213 (37%), Gaps = 25/213 (11%)

Query: 310 NLTQVSFFDLSNNQLAG-P--IPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVR 366
           +  +V   +     L   P  +P        L    L+ N       + L     L  + 
Sbjct: 11  SHLEV---NCDKRNLTALPPDLPKD---TTIL---HLSENLLYTFSLATLMPYTRLTQLN 61

Query: 367 LSDNQLSGHIDEFPS-KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPY 425
           L   +L+  +    +   L  + LS+N+LQ S+P     L  LT L +  N  + +    
Sbjct: 62  LDRAELT-KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL-PLG 118

Query: 426 MFAKLIKLKYLYLSHNSL-SL-GNTFKIDSPFPKFSYLSLSACNISAFPRFL-RTQDELS 482
               L +L+ LYL  N L +L        +P PK   LSL+  N++  P  L    + L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLL---TPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

Query: 483 YLDLSENKIDGQIPSWISEIGKDSLSYVNLSHN 515
            L L EN +   IP      G   L +  L  N
Sbjct: 176 TLLLQENSLYT-IPKGF--FGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 56/252 (22%), Positives = 75/252 (29%), Gaps = 65/252 (25%)

Query: 362 LEYVRLSDNQLSGHIDEFPS---KSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNN 417
              V      L+      P    K    ++LS N L  +   +       LT L LD   
Sbjct: 12  HLEVNCDKRNLT----ALPPDLPKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAE 66

Query: 418 FSGIAEPYMFAKLIKLKYLYLSHNSL-SLGNTFKIDSPFPKFSYLSLSACNISAFPRFLR 476
            + +        L  L  L LSHN L SL          P  + L +S   +++ P    
Sbjct: 67  LTKLQV---DGTLPVLGTLDLSHNQLQSLPLLG---QTLPALTVLDVSFNRLTSLPLGAL 120

Query: 477 TQ-DELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRS 535
               EL  L L  N++   +P  +                            L  L L +
Sbjct: 121 RGLGELQELYLKGNELK-TLPPGLL----TPTP------------------KLEKLSLAN 157

Query: 536 NLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNF- 594
           N L     +P   L  L                    LD L L  N L  TIP+  G F 
Sbjct: 158 NNLTE---LPAGLLNGL------------------ENLDTLLLQENSLY-TIPK--GFFG 193

Query: 595 SPSLSVLDLRNN 606
           S  L    L  N
Sbjct: 194 SHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 48/257 (18%), Positives = 83/257 (32%), Gaps = 56/257 (21%)

Query: 588 PECIGNFSPSLSVLDLRNNRLNGSIP-GTFAESNWLRSLNLNNNELGGAIPQSLVNCTKV 646
           P C  +   S   ++     L  ++P     +      L+L+ N L      +L+  T++
Sbjct: 2   PICEVSKVASHLEVNCDKRNL-TALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRL 57

Query: 647 EVLDIGNIKIN--DAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSIN 704
             L++   ++          G LP L  L L  N+           ++ P L +LD+S N
Sbjct: 58  TQLNLDRAELTKLQVD----GTLPVLGTLDLSHNQLQSLPLLG---QTLPALTVLDVSFN 110

Query: 705 NFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTI 764
             +  LP   L  L  ++ +     +L+ L                              
Sbjct: 111 RLT-SLPLGALRGLGELQELYLKGNELKTL------------------------------ 139

Query: 765 DFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIP 824
                               L  L+L++N+ T      L  L  L++L L  N++   IP
Sbjct: 140 --PPGLLT--------PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IP 188

Query: 825 KPLTSLTSLSVLNLSHN 841
           K       L    L  N
Sbjct: 189 KGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.6 bits (129), Expect = 9e-08
 Identities = 48/229 (20%), Positives = 77/229 (33%), Gaps = 53/229 (23%)

Query: 96  NIPTNTSLFHLLHLQTLNLSHNDFDYSEISSG-FSRFRNLTHFSLSDSNINCKIPYEISF 154
           ++P +T          L+LS N       S      +  LT  +L  + +  K+      
Sbjct: 28  DLPKDT--------TILHLSENLL--YTFSLATLMPYTRLTQLNLDRAELT-KLQ----- 71

Query: 155 LKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPAN 214
                 V  +L  L     +L LS   LQ + P+    LP   ++ +S N          
Sbjct: 72  ------VDGTLPVL----GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR--------- 111

Query: 215 NWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMH 274
                +  L     +   L +       L  L L  ++     P  L    +L  L L +
Sbjct: 112 -----LTSL--PLGALRGLGE-------LQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157

Query: 275 NNFSGHIPSSL-SNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNN 322
           NN +  +P+ L + L  L  L L  NS +      F    + F  L  N
Sbjct: 158 NNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 52/209 (24%), Positives = 78/209 (37%), Gaps = 45/209 (21%)

Query: 506 SLSYVNLSHNFITKMKQ---IPWKNLGYLDLRSNLLQGPLPV--PPSSLRVLLISNNQFT 560
             + ++LS N +        +P+  L  L+L    L   L V      L  L +S+NQ  
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVDGTLPVLGTLDLSHNQLQ 90

Query: 561 GEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFS--PSLSVLDLRNNRLNGSIP-GTFA 617
             +      + AL VLD+S NRL  ++P   G       L  L L+ N L  ++P G   
Sbjct: 91  -SLPLLGQTLPALTVLDVSFNRLT-SLPL--GALRGLGELQELYLKGNELK-TLPPGLLT 145

Query: 618 ESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRS 677
            +  L  L+L NN L       L       +L+                L  L  L+L+ 
Sbjct: 146 PTPKLEKLSLANNNL-----TEL----PAGLLN---------------GLENLDTLLLQE 181

Query: 678 NKFHGSVREFEPKESF--PKLRILDLSIN 704
           N  + ++    PK  F    L    L  N
Sbjct: 182 NSLY-TI----PKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 48/238 (20%), Positives = 73/238 (30%), Gaps = 52/238 (21%)

Query: 614 GTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVL 673
              ++      +N +   L  A+P  L       +L +    +       L     L  L
Sbjct: 4   CEVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 674 VLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRY 733
            L   +    + + +   + P L  LDLS N     LP    + L            L  
Sbjct: 61  NLDRAE----LTKLQVDGTLPVLGTLDLSHNQLQS-LPLLG-QTL----------PALTV 104

Query: 734 LGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHN 793
           L   + +             +  +               G        L  L+ L L  N
Sbjct: 105 LDVSFNR-------------LTSL---------PLGALRG--------LGELQELYLKGN 134

Query: 794 HFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPL-TSLTSLSVLNLSHNRLDGPIPHG 850
                 P  L    KLE L L++NN+  ++P  L   L +L  L L  N L   IP G
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKG 190

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 90.3 bits (224), Expect = 8e-20
 Identities = 52/296 (17%), Positives = 85/296 (28%), Gaps = 23/296 (7%)

Query: 212 PANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLH 271
           P  +W+S    L  ++        S+  L           QF   + +   +L +LT+  
Sbjct: 20  PKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSL--SLKRLTVRA 77

Query: 272 LMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD---IFNLTQVSFFDLSNNQLAGPI 328
               +        +  +  L  L L +    G  P          ++  +L N   A   
Sbjct: 78  ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD 137

Query: 329 PSHGS----RLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS--- 381
                        L ++ +            +   P L  + LSDN   G      +   
Sbjct: 138 AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197

Query: 382 ---KSLQNIYLSNNRLQ---GSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKY 435
               +LQ + L N  ++   G   +     V L  L L  N+    A         +L  
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 436 LYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKI 491
           L LS   L             K S L LS   +   P       ++  L L  N  
Sbjct: 258 LNLSFTGL----KQVPKGLPAKLSVLDLSYNRLDRNPSPDELP-QVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 84.2 bits (208), Expect = 1e-17
 Identities = 59/348 (16%), Positives = 105/348 (30%), Gaps = 85/348 (24%)

Query: 100 NTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMST 159
             SL +LL  + ++   +   +++I    S    L   ++  + I             S 
Sbjct: 42  GRSLEYLL--KRVDTEADLGQFTDIIKSLS----LKRLTVRAARIP------------SR 83

Query: 160 VVLDSLKNLS-SSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTS 218
           ++  +L+ L  S L  L+L +  + G  P  +     P                      
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD--------------------- 122

Query: 219 PIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFS 278
            +  L++   S++     +  L+                         L +L +   +  
Sbjct: 123 -LNILNLRNVSWATRDAWLAELQQW-------------------LKPGLKVLSIAQAHSL 162

Query: 279 GHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNL 338
                 +     L+ LDLS N   GE   I  L  + F                  LQ L
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF----------------PTLQVL 206

Query: 339 VLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFP---SKSLQNIYLSNNRLQ 395
            L      + SG   +   +   L+ + LS N L              L ++ LS   L+
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

Query: 396 GSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSL 443
             +P  +     L+ L L  N       P    +L ++  L L  N  
Sbjct: 267 -QVPKGLPA--KLSVLDLSYNRLDRNPSP---DELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.9 bits (197), Expect = 3e-16
 Identities = 60/259 (23%), Positives = 84/259 (32%), Gaps = 25/259 (9%)

Query: 597 SLSVLDLRNNRLNGSIPGTFAESNW---LRSLNLNNNELGGAIPQSLVNCT--KVEVLDI 651
           SL  L +R  R+   I            L+ L L N E+ G  P  L+  T   + +L++
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 652 GNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKES---FPKLRILDLSINNFSG 708
            N+        WL  L +     L+      +       E    FP L  LDLS N   G
Sbjct: 129 RNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187

Query: 709 YLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSS 768
                           +    K   L     +++ + T  G    +         +D S 
Sbjct: 188 ERGLIS----------ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH 237

Query: 769 NGFDGEISQVI-GKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPL 827
           N                L  LNLS      Q+P  L   AKL  LDLS N +    P P 
Sbjct: 238 NSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR-NPSPD 293

Query: 828 TSLTSLSVLNLSHNRLDGP 846
             L  +  L+L  N     
Sbjct: 294 E-LPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.4 bits (193), Expect = 9e-16
 Identities = 55/298 (18%), Positives = 94/298 (31%), Gaps = 51/298 (17%)

Query: 407 NLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDS--PFPKFSYLSLS 464
           +L  L    +  + + +     K + LK L +    +     F             L+L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 465 ACNISA---FPRFLRTQDELSYLDLSENKIDGQIPSWISEIG---KDSLSYVNLSHNFIT 518
              ++     P    T  +L+ L+L          +W++E+    K  L  ++++     
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 519 KMKQIPW---KNLGYLDLRSNLLQGPLPVPPS-------SLRVLLISNNQFT---GEIIH 565
                       L  LDL  N   G   +  +       +L+VL + N       G    
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

Query: 566 SICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSL 625
                + L  LDLS+N L         ++   L+ L+L    L     G  A+   L  L
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVL 279

Query: 626 NLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGS 683
           +L+ N L    P                             LP++  L L+ N F  S
Sbjct: 280 DLSYNRLDR-NPSPD-------------------------ELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.0 bits (179), Expect = 5e-14
 Identities = 61/297 (20%), Positives = 89/297 (29%), Gaps = 54/297 (18%)

Query: 433 LKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISA--FPRFLRTQD--ELSYLDLSE 488
           L+YL    ++ +    F           L++ A  I +      LR      L  L L  
Sbjct: 45  LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104

Query: 489 NKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSS 548
            ++ G  P  + E     L+ +NL +           +   +L                 
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP--------------G 150

Query: 549 LRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPE----CIGNFSPSLSVLDLR 604
           L+VL I+           +    AL  LDLS+N   G        C   F P+L VL LR
Sbjct: 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF-PTLQVLALR 209

Query: 605 NNRLN---GSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFP 661
           N  +    G      A    L+ L+L++N L  A                          
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS--------------------- 248

Query: 662 YWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENL 718
                  +L  L L             PK    KL +LDLS N          L  +
Sbjct: 249 --CDWPSQLNSLNLSFTGLKQ-----VPKGLPAKLSVLDLSYNRLDRNPSPDELPQV 298

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.0 bits (166), Expect = 2e-12
 Identities = 45/231 (19%), Positives = 80/231 (34%), Gaps = 24/231 (10%)

Query: 625 LNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYW---LGNLPELQVLVLRSNKFH 681
           L   + E        ++    ++ L +   +I     +    +  +  LQ L L + +  
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 682 GSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQD 741
           G+      + + P L IL+L   N S    + +L  L            L+ L       
Sbjct: 109 GTAPPPLLEATGPDLNILNLR--NVSWATRDAWLAELQQWLKPG-----LKVLSIAQ--- 158

Query: 742 SVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEI----SQVIGKLHSLRLLNLSHNHFT- 796
                      E  ++    +T+D S N   GE     +    K  +L++L L +     
Sbjct: 159 ---AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 797 --GQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTS-LTSLSVLNLSHNRLD 844
             G   +      +L+ LDLS N++      P     + L+ LNLS   L 
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 41/266 (15%), Positives = 74/266 (27%), Gaps = 39/266 (14%)

Query: 93  LHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISS--GFSRFRNLTHFSLSDSNINCKIPY 150
              ++   T +   L L+ L +         +           L   +L +  +    P 
Sbjct: 54  TEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113

Query: 151 EISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGK 210
            +       + + +L+N+S +     L++        +  +  P  +++ ++Q  SL   
Sbjct: 114 PLLEATGPDLNILNLRNVSWATRDAWLAE--------LQQWLKPGLKVLSIAQAHSLNFS 165

Query: 211 FPANNWTSPIEYLDVSETSFSE--------LPDSIGNLKLLGRLMLGYSQFVGPVPASLG 262
                    +  LD+S+              P     L++L     G     G   A   
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225

Query: 263 NLTQLTLLHLMHNNFSGHIPSSL-SNLVQLTYLDLSSNSF-------------------- 301
              QL  L L HN+      +       QL  L+LS                        
Sbjct: 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNR 285

Query: 302 FGEIPDIFNLTQVSFFDLSNNQLAGP 327
               P    L QV    L  N     
Sbjct: 286 LDRNPSPDELPQVGNLSLKGNPFLDS 311

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 86.2 bits (214), Expect = 6e-19
 Identities = 33/191 (17%), Positives = 69/191 (36%), Gaps = 12/191 (6%)

Query: 264 LTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIP-DIF-NLTQVSFFDLSN 321
                 L L+  +       + SNL  ++ + +S +    ++    F NL++V+  ++ N
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 322 NQLAGPIPSHG-SRLQNLVLIRLNNNSFSGTIP--SWLFSLPLLEYVRLSDNQLSGHIDE 378
            +    I       L  L  + + N       P  + ++S  +   + ++DN     I  
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 379 --FP--SKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLI-KL 433
             F         + L NN    S+    F    L  + L+ N +  + +   F  +    
Sbjct: 149 NAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207

Query: 434 KYLYLSHNSLS 444
             L +S  S++
Sbjct: 208 SLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 48/268 (17%), Positives = 88/268 (32%), Gaps = 52/268 (19%)

Query: 365 VRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAE 423
            R++   +   I   P  S Q + L    L+ +IPS  F  L N++ + +  +      E
Sbjct: 16  FRVTCKDIQ-RIPSLPP-STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLE 72

Query: 424 PYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSY 483
            + F  L K+ ++ + +                  +Y+          P  L+    L +
Sbjct: 73  SHSFYNLSKVTHIEIRNT--------------RNLTYID---------PDALKELPLLKF 109

Query: 484 LDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLP 543
           L +    +    P        D    + ++ N    M  IP           N  QG   
Sbjct: 110 LGIFNTGL-KMFPDLTKVYSTDIFFILEITDN--PYMTSIP----------VNAFQG--- 153

Query: 544 VPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSP---SLSV 600
              +    L + NN FT  +     +   LD + L+ N+    I +    F       S+
Sbjct: 154 -LCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDK--DAFGGVYSGPSL 209

Query: 601 LDLRNNRLNGSIP-GTFAESNWLRSLNL 627
           LD+    +  ++P         L + N 
Sbjct: 210 LDVSQTSVT-ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 46/247 (18%), Positives = 83/247 (33%), Gaps = 52/247 (21%)

Query: 109 LQTLNLSHNDFDYSEISSG-FSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKN 167
            QTL L         I S  FS   N++   +S                +  +   S  N
Sbjct: 33  TQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDV------------TLQQLESHSFYN 78

Query: 168 LSSSLTSLSLSDCILQGNFPINIF-HLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVS 226
           LS  +T + + +         +    LP                         +++L + 
Sbjct: 79  LSK-VTHIEIRNTRNLTYIDPDALKELPL------------------------LKFLGIF 113

Query: 227 ETSFSELPD--SIGNLKLLGRLMLGYSQFVGPVPA-SLGNLTQLTL-LHLMHNNFSGHIP 282
            T     PD   + +  +   L +  + ++  +P  +   L   TL L L +N F+  + 
Sbjct: 114 NTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQ 172

Query: 283 SSLSNLVQLTYLDLSSNSFFGEIP-DIFN--LTQVSFFDLSNNQLAGPIPSHGSRLQNLV 339
               N  +L  + L+ N +   I  D F    +  S  D+S   +   +PS G  L++L 
Sbjct: 173 GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSKG--LEHLK 229

Query: 340 LIRLNNN 346
            +   N 
Sbjct: 230 ELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 35/189 (18%), Positives = 68/189 (35%), Gaps = 23/189 (12%)

Query: 542 LPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFS--PSLS 599
           +P  P S + L +          H+  ++  +  + +S +     +     +F     ++
Sbjct: 26  IPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES--HSFYNLSKVT 83

Query: 600 VLDLRNNRLNGSIP-GTFAESNWLRSLNLNNNELGGAIPQ--SLVNCTKVEVLDI-GNIK 655
            +++RN R    I      E   L+ L + N  L    P    + +     +L+I  N  
Sbjct: 84  HIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPY 142

Query: 656 I----NDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESF--PKLRILDLSINNFSGY 709
           +     +AF    G   E   L L +N F  SV       +F   KL  + L+ N +   
Sbjct: 143 MTSIPVNAFQ---GLCNETLTLKLYNNGFT-SV----QGYAFNGTKLDAVYLNKNKYLTV 194

Query: 710 LPERFLENL 718
           + +     +
Sbjct: 195 IDKDAFGGV 203

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.0 bits (120), Expect = 9e-07
 Identities = 39/284 (13%), Positives = 83/284 (29%), Gaps = 76/284 (26%)

Query: 565 HSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRS 624
              C+    +   ++   +   IP    +  PS   L L    L       F+    +  
Sbjct: 5   SPPCECHQEEDFRVTCKDIQ-RIP----SLPPSTQTLKLIETHLRTIPSHAFSNLPNISR 59

Query: 625 LNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSV 684
           + ++ +     +                    + +F     NL ++  + +R+ +    +
Sbjct: 60  IYVSIDVTLQQLE-------------------SHSF----YNLSKVTHIEIRNTRNLTYI 96

Query: 685 REFEPKESF---PKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQD 741
                 ++    P L+ L +       +     + + +              L       
Sbjct: 97  ----DPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTD----------IFFIL------- 135

Query: 742 SVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPS 801
                    EI     +T         N F G  ++          L L +N FT  +  
Sbjct: 136 ---------EITDNPYMTSI-----PVNAFQGLCNE-------TLTLKLYNNGFT-SVQG 173

Query: 802 SLGNLAKLESLDLSSNNVAGKIPKP-LTSLTS-LSVLNLSHNRL 843
              N  KL+++ L+ N     I K     + S  S+L++S   +
Sbjct: 174 YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 85.8 bits (213), Expect = 1e-18
 Identities = 40/194 (20%), Positives = 72/194 (37%), Gaps = 14/194 (7%)

Query: 258 PASLGNLTQLTLLHLMHNNFSGHIPSSL-SNLVQLTYLDLSSNSFFGEIPDIF-NLTQVS 315
             S  +  +L +L L        I      +L  L+ L L+ N         F  L+ + 
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 316 FFDLSNNQLAGPIPSHG-SRLQNLVLIRLNNNSFSGTIPSWLFS-LPLLEYVRLSDNQLS 373
                   LA  + +     L+ L  + + +N          FS L  LE++ LS N++ 
Sbjct: 104 KLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 374 ----GHIDEFPS--KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMF 427
                 +           ++ LS N +   I    F+ + L +L LD+N    +    +F
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSV-PDGIF 220

Query: 428 AKLIKLKYLYLSHN 441
            +L  L+ ++L  N
Sbjct: 221 DRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 84.3 bits (209), Expect = 6e-18
 Identities = 45/205 (21%), Positives = 72/205 (35%), Gaps = 11/205 (5%)

Query: 318 DLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFS-LPLLEYVRLSDNQLSGHI 376
           DLS N L             L ++ L+      TI    +  L  L  + L+ N +    
Sbjct: 34  DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 377 DEFPSK--SLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAKLIKL 433
               S   SLQ +      L  S+ +     L  L +L +  N       P  F+ L  L
Sbjct: 93  LGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 434 KYLYLSHNSLSL--GNTFKIDSPFPKFSY-LSLSACNISAFPRFLRTQDELSYLDLSENK 490
           ++L LS N +        ++    P  +  L LS   ++        +  L  L L  N+
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ 211

Query: 491 IDGQIPSWISEIGKDSLSYVNLSHN 515
           +   +P  I +    SL  + L  N
Sbjct: 212 L-KSVPDGIFDRLT-SLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 71.5 bits (176), Expect = 8e-14
 Identities = 62/257 (24%), Positives = 86/257 (33%), Gaps = 60/257 (23%)

Query: 383 SLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHN 441
           S +N+ LS N L+  + S  F     L  L L       I E   +  L  L  L L+ N
Sbjct: 29  STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGN 86

Query: 442 SLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISE 501
            +              FS LS                  L  L   E  +   + ++   
Sbjct: 87  PIQ-------SLALGAFSGLS-----------------SLQKLVAVETNLA-SLENFPIG 121

Query: 502 IGKDSLSYVNLSHNFITKMKQIPWK-------NLGYLDLRSNLLQGPLPVPPSSLRVLLI 554
             K +L  +N++HN I                NL +LDL SN +Q    +  + LRVL  
Sbjct: 122 HLK-TLKELNVAHNLIQS---FKLPEYFSNLTNLEHLDLSSNKIQS---IYCTDLRVL-- 172

Query: 555 SNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSP-SLSVLDLRNNRLNGSIP 613
                                LDLS N +N  I    G F    L  L L  N+L     
Sbjct: 173 HQMPLL------------NLSLDLSLNPMN-FIQP--GAFKEIRLKELALDTNQLKSVPD 217

Query: 614 GTFAESNWLRSLNLNNN 630
           G F     L+ + L+ N
Sbjct: 218 GIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.3 bits (139), Expect = 6e-09
 Identities = 47/251 (18%), Positives = 74/251 (29%), Gaps = 52/251 (20%)

Query: 573 LDVLDLSNNRLNGTIPECIGNFS--PSLSVLDLRNNRLNGSIP-GTFAESNWLRSLNLNN 629
              LDLS N L   +     +F   P L VLDL    +  +I  G +   + L +L L  
Sbjct: 30  TKNLDLSFNPL-RHLGS--YSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85

Query: 630 NELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEP 689
           N +      +    + ++ L      +     + +G+L  L+ L +  N        F+ 
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ----SFKL 141

Query: 690 KESF---PKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVT 746
            E F     L  LDLS N     +    L  L           ++  L            
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVL----------HQMPLLNLSLD------- 183

Query: 747 LKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNL 806
           L    +                  F             L+ L L  N            L
Sbjct: 184 LSLNPMNF-----------IQPGAFKEI---------RLKELALDTNQLKSVPDGIFDRL 223

Query: 807 AKLESLDLSSN 817
             L+ + L +N
Sbjct: 224 TSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.7 bits (122), Expect = 7e-07
 Identities = 53/265 (20%), Positives = 79/265 (29%), Gaps = 74/265 (27%)

Query: 92  WLHGN----IPTNTSLFHLLHLQTLNLSHNDFDYSEISSG-FSRFRNLTHFSLSDSNINC 146
            L  N    +  + S F    LQ L+LS  +     I  G +    +L+   L+  N   
Sbjct: 34  DLSFNPLRHLG-SYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTG-N--- 86

Query: 147 KIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIF-HLPNPQMIRLSQNP 205
                     + ++ L +   L SSL  L   +  L  +       HL   + + ++ N 
Sbjct: 87  ---------PIQSLALGAFSGL-SSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN- 134

Query: 206 SLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLT 265
                                          I +                 +P    NLT
Sbjct: 135 ------------------------------LIQSF---------------KLPEYFSNLT 149

Query: 266 QLTLLHLMHNNFSGHIPSSLSNLVQLTY----LDLSSNSFFGEIPDIFNLTQVSFFDLSN 321
            L  L L  N       + L  L Q+      LDLS N      P  F   ++    L  
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDT 209

Query: 322 NQLAGPIPSHGSRLQNLVLIRLNNN 346
           NQL         RL +L  I L+ N
Sbjct: 210 NQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 39/221 (17%), Positives = 78/221 (35%), Gaps = 37/221 (16%)

Query: 506 SLSYVNLSHNFITKMKQIPWK------NLGYLDLRSNLLQGPLPVPP------SSLRVLL 553
           S   ++LS N +     +          L  LDL    +Q    +        S L  L+
Sbjct: 29  STKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQT---IEDGAYQSLSHLSTLI 82

Query: 554 ISNNQFTGEIIHSICD-IIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRL-NGS 611
           ++ N     +       + +L  L      L  ++         +L  L++ +N + +  
Sbjct: 83  LTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 612 IPGTFAESNWLRSLNLNNNELGGAIP----QSLVNCTKVEV-LDIGNIKINDAFPYWLGN 666
           +P  F+    L  L+L++N++  +I     + L     + + LD+    +N         
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK 198

Query: 667 LPELQVLVLRSNKFHGSVREFEPKESF---PKLRILDLSIN 704
              L+ L L +N+      +  P   F     L+ + L  N
Sbjct: 199 EIRLKELALDTNQL-----KSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 30/193 (15%)

Query: 666 NLP-ELQVLVLRSNKFHGSVREFEPK--ESFPKLRILDLSINNFSGYLPERFLENLNAMR 722
           NLP   + L L  N      R        SFP+L++LDLS       + +   ++L+ + 
Sbjct: 25  NLPFSTKNLDLSFNPL----RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS 79

Query: 723 NVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKL 782
            +      ++ L    +                  L+    +           +  IG L
Sbjct: 80  TLILTGNPIQSLALGAFSG----------------LSSLQKLVAVETNLASLENFPIGHL 123

Query: 783 HSLRLLNLSHNHFTG-QIPSSLGNLAKLESLDLSSNN---VAGKIPKPLTSLTSLSV-LN 837
            +L+ LN++HN     ++P    NL  LE LDLSSN    +     + L  +  L++ L+
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 838 LSHNRLDGPIPHG 850
           LS N ++  I  G
Sbjct: 184 LSLNPMNF-IQPG 195

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 53/265 (20%), Positives = 81/265 (30%), Gaps = 78/265 (29%)

Query: 593 NFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIG 652
           N   S   LDL  N L      +F     L+ L+L+  E+   I                
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIE--------------- 68

Query: 653 NIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESF---PKLRILDLSINNFSGY 709
               + A+     +L  L  L+L  N    S+       +F     L+ L     N +  
Sbjct: 69  ----DGAY----QSLSHLSTLILTGNPIQ-SL----ALGAFSGLSSLQKLVAVETNLA-S 114

Query: 710 LPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSN 769
           L    + +L            L+ L            +    I+  K+   F+       
Sbjct: 115 LENFPIGHLK----------TLKEL-----------NVAHNLIQSFKLPEYFS------- 146

Query: 770 GFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLE----SLDLSSNNVAGKIPK 825
                       L +L  L+LS N       + L  L ++     SLDLS N +   I  
Sbjct: 147 -----------NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQP 194

Query: 826 PLTSLTSLSVLNLSHNRLDGPIPHG 850
                  L  L L  N+L   +P G
Sbjct: 195 GAFKEIRLKELALDTNQLKS-VPDG 218

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 85.6 bits (212), Expect = 5e-18
 Identities = 48/274 (17%), Positives = 88/274 (32%), Gaps = 18/274 (6%)

Query: 223 LDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIP 282
               E+  +E+P  +   +    L    ++       +      L  + +  N+    I 
Sbjct: 14  FLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 71

Query: 283 SS-LSNLVQLTYLDLSSNSFFGEIP-DIF-NLTQVSFFDLSNNQLAGPIPSHGSRLQNLV 339
           +   SNL +L  + +   +    I  + F NL  + +  +SN  +      H       V
Sbjct: 72  ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV 131

Query: 340 LIRLNNNSFSGTIPSWLFS--LPLLEYVRLSDNQLSG-HIDEFPSKSLQNIYLS-NNRLQ 395
           L+ + +N    TI    F         + L+ N +   H   F    L  + LS NN L+
Sbjct: 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE 191

Query: 396 GSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSP 454
             +P+ +F        L +       +   Y    L KL+     +              
Sbjct: 192 -ELPNDVFHGASGPVILDISRTRIHSL-PSYGLENLKKLRARSTYNLK-----KLPTLEK 244

Query: 455 FPKFSYLSLS-ACNISAFPRFLRTQDELSYLDLS 487
                  SL+   +  AF  + R   EL  +   
Sbjct: 245 LVALMEASLTYPSHCCAFANWRRQISELHPICNK 278

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 76.4 bits (188), Expect = 6e-15
 Identities = 56/319 (17%), Positives = 103/319 (32%), Gaps = 67/319 (21%)

Query: 365 VRLSDNQLSGHIDEFPS---KSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSG 420
               +++++    E PS   ++   +     +L+  I    F    +L  +++  N+   
Sbjct: 14  FLCQESKVT----EIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 421 IAEPYMFAKLIKLKYLYLSH-NSLSL--GNTFKIDSPFPKFSYLSLSACNISAFPRFLRT 477
           + E  +F+ L KL  + +   N+L       F+     P   YL +S   I   P   + 
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ---NLPNLQYLLISNTGIKHLPDVHKI 125

Query: 478 Q-DELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSN 536
              +   LD+ +N         I  I ++S     LS                 L L  N
Sbjct: 126 HSLQKVLLDIQDN-------INIHTIERNSFV--GLSF------------ESVILWLNKN 164

Query: 537 LLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFS- 595
            +Q              I N+ F G            ++    NN L   +P     F  
Sbjct: 165 GIQE-------------IHNSAFNG--------TQLDELNLSDNNNLE-ELPN--DVFHG 200

Query: 596 -PSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNI 654
                +LD+   R++            LR+ +  N +    +P +L     +    +   
Sbjct: 201 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYP 256

Query: 655 KINDAFPYWLGNLPELQVL 673
               AF  W   + EL  +
Sbjct: 257 SHCCAFANWRRQISELHPI 275

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.1 bits (169), Expect = 1e-12
 Identities = 41/275 (14%), Positives = 86/275 (31%), Gaps = 35/275 (12%)

Query: 574 DVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELG 633
            V     +++   IP    +   +   L     +L     G F+    L  + ++ N++ 
Sbjct: 12  RVFLCQESKVT-EIPS---DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 634 GAIP----QSLVNCTKVEVLDIGNIKI--NDAFPYWLGNLPELQVLVLRSNKFHGSVREF 687
             I      +L    ++ +    N+     +AF     NLP LQ L++ +      + + 
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAF----QNLPNLQYLLISNTGIK-HLPDV 122

Query: 688 EPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTL 747
               S  +  +LD+  N     +       L+          +   L            +
Sbjct: 123 HKIHS-LQKVLLDIQDNINIHTIERNSFVGLSF---------ESVILWLNKNG------I 166

Query: 748 KGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLA 807
           +           +       +N  +   + V        +L++S           L NL 
Sbjct: 167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK 226

Query: 808 KLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNR 842
           KL +    +     K+P  L  L +L   +L++  
Sbjct: 227 KLRARSTYNLK---KLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.1 bits (156), Expect = 6e-11
 Identities = 31/241 (12%), Positives = 72/241 (29%), Gaps = 30/241 (12%)

Query: 92  WLHGN----IPTNTSLFHLLHLQTLNLSHNDFDYSEISSG-FSRFRNLTHFSLSDSNINC 146
                    I           L+ + +S ND     I +  FS    L    +  +N   
Sbjct: 36  RFVLTKLRVIQKGA-FSGFGDLEKIEISQNDV-LEVIEADVFSNLPKLHEIRIEKAN--- 90

Query: 147 KIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIF-HLPNPQMIRLSQNP 205
                     +  +  ++ +NL  +L  L +S+  ++ + P     H     ++ +  N 
Sbjct: 91  ---------NLLYINPEAFQNL-PNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNI 139

Query: 206 SLAGKFPAN---NWTSPIEYLDVSETSFSELPDSI-GNLKLLGRLMLGYSQFVGPVPASL 261
           ++      N     +     L +++    E+ +S     +L    +   +          
Sbjct: 140 NIH-TIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVF 198

Query: 262 GNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSN 321
              +   +L +            L NL +L      +     ++P +  L  +    L+ 
Sbjct: 199 HGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPTLEKLVALMEASLTY 255

Query: 322 N 322
            
Sbjct: 256 P 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 38/249 (15%), Positives = 75/249 (30%), Gaps = 52/249 (20%)

Query: 573 LDVLDLSNNRLNGTIPECIGNFS--PSLSVLDLRNNRLNGSIP-GTFAESNWLRSLNL-N 628
              L     +L   I +  G FS    L  +++  N +   I    F+    L  + +  
Sbjct: 32  AIELRFVLTKLR-VIQK--GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 629 NNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFE 688
            N L    P++  N   ++ L I N  I         +  +  +L ++ N    ++    
Sbjct: 89  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI---- 144

Query: 689 PKESF----PKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVV 744
            + SF     +  IL L+ N     +               +D   L  L  +       
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPND------- 196

Query: 745 VTLKGTEIEMQKILTVFTTIDFSSN--------GFDG----------EISQV--IGKLHS 784
               G         +    +D S          G +            + ++  + KL +
Sbjct: 197 -VFHG--------ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVA 247

Query: 785 LRLLNLSHN 793
           L   +L++ 
Sbjct: 248 LMEASLTYP 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.5 bits (216), Expect = 6e-18
 Identities = 51/259 (19%), Positives = 88/259 (33%), Gaps = 48/259 (18%)

Query: 283 SSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIR 342
                  +    +L   S   +      L  +     +N+ +          +Q +    
Sbjct: 15  FPDDAFAETIKDNLKKKS-VTDAVTQNELNSIDQIIANNSDI--------KSVQGIQ--- 62

Query: 343 LNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS-KSLQNIYLSNNRLQGSIPSS 401
                           LP +  + L+ N+L+  I    + K+L  ++L  N+++  + SS
Sbjct: 63  ---------------YLPNVTKLFLNGNKLT-DIKPLTNLKNLGWLFLDENKIK-DL-SS 104

Query: 402 IFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKID--SPFPKFS 459
           + +L  L  L L+ N  S I        L +L+ LYL +N ++      I   S   K  
Sbjct: 105 LKDLKKLKSLSLEHNGISDING---LVHLPQLESLYLGNNKIT-----DITVLSRLTKLD 156

Query: 460 YLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGK-DSLSYVNLSHNFIT 518
            LSL    IS     L    +L  L LS+N I     S +  +    +L  + L      
Sbjct: 157 TLSLEDNQISDIV-PLAGLTKLQNLYLSKNHI-----SDLRALAGLKNLDVLELFSQECL 210

Query: 519 KMKQIPWKNLGYLDLRSNL 537
                   NL   +   N 
Sbjct: 211 NKPINHQSNLVVPNTVKNT 229

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 82.1 bits (202), Expect = 3e-16
 Identities = 41/285 (14%), Positives = 92/285 (32%), Gaps = 26/285 (9%)

Query: 384 LQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSL 443
           +      +  +       IF      +   D+     + +     +L  +  +  +++ +
Sbjct: 1   MGETITVSTPI-----KQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI 55

Query: 444 SLGNTFKID--SPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISE 501
                  +      P  + L L+   ++     L     L +L L ENKI       +S 
Sbjct: 56  K-----SVQGIQYLPNVTKLFLNGNKLTDIK-PLTNLKNLGWLFLDENKI-----KDLSS 104

Query: 502 IGK-DSLSYVNLSHNFITKMKQIP-WKNLGYLDLRSNLLQGPLPVPP-SSLRVLLISNNQ 558
           +     L  ++L HN I+ +  +     L  L L +N +     +   + L  L + +NQ
Sbjct: 105 LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ 164

Query: 559 FTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAE 618
            +   I  +  +  L  L LS N +  +    +     +L VL+L +           + 
Sbjct: 165 ISD--IVPLAGLTKLQNLYLSKNHI--SDLRALAGL-KNLDVLELFSQECLNKPINHQSN 219

Query: 619 SNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYW 663
                ++   +  L      S     +   +     +  +   + 
Sbjct: 220 LVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFI 264

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 76.7 bits (188), Expect = 1e-14
 Identities = 54/275 (19%), Positives = 93/275 (33%), Gaps = 42/275 (15%)

Query: 576 LDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGA 635
               +  +    P     F       +L+   +  ++     E N +  +  NN+++   
Sbjct: 4   TITVSTPIKQIFP--DDAF-AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI--K 56

Query: 636 IPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPK 695
             Q +     V  L +   K+ D  P  L NL  L  L L  NK    +++    +   K
Sbjct: 57  SVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK----IKDLSSLKDLKK 110

Query: 696 LRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQ 755
           L+ L L  N  S       +  L  +         L  L     + + +  L        
Sbjct: 111 LKSLSLEHNGISD------INGLVHLPQ-------LESLYLGNNKITDITVLSR------ 151

Query: 756 KILTVFTTIDFSSNGFDGEISQV--IGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLD 813
             LT   T+    N    +IS +  +  L  L+ L LS NH +     +L  L  L+ L+
Sbjct: 152 --LTKLDTLSLEDN----QISDIVPLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLE 203

Query: 814 LSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIP 848
           L S     K     ++L   + +  +   L  P  
Sbjct: 204 LFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.5 bits (185), Expect = 3e-14
 Identities = 55/351 (15%), Positives = 111/351 (31%), Gaps = 54/351 (15%)

Query: 106 LLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSL 165
                  NL       ++  +  +   ++     ++S+I       +  +         L
Sbjct: 20  FAETIKDNLKKKSV--TDAVT-QNELNSIDQIIANNSDIK-----SVQGI-------QYL 64

Query: 166 KNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDV 225
            N+    T L L+           +  +       L+   +L              +L +
Sbjct: 65  PNV----TKLFLNGN--------KLTDIKP-----LTNLKNL-------------GWLFL 94

Query: 226 SETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSL 285
            E    +L  S+ +LK L  L L ++         L +L QL  L+L +N  +    + L
Sbjct: 95  DENKIKDL-SSLKDLKKLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKIT--DITVL 149

Query: 286 SNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNN 345
           S L +L  L L  N    +I  +  LT++    LS N ++       + L+NL ++ L +
Sbjct: 150 SRLTKLDTLSLEDNQI-SDIVPLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFS 206

Query: 346 NSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFEL 405
                   +   +L +   V+ +D  L            +   +  + L        F  
Sbjct: 207 QECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWH-LPEFTNEVSFIF 265

Query: 406 VNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFP 456
                +      F G     +         +  +     +    +I +P P
Sbjct: 266 YQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKP 316

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.4 bits (138), Expect = 1e-08
 Identities = 55/353 (15%), Positives = 105/353 (29%), Gaps = 84/353 (23%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSD 141
           ++  +  +    + +I +   + +L ++  L L+ N    ++I    +  +NL    L +
Sbjct: 44  SIDQIIAN----NSDIKSVQGIQYLPNVTKLFLNGNKL--TDI-KPLTNLKNLGWLFLDE 96

Query: 142 SNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRL 201
           + I                 L SLK+L   L SLSL            I  +       L
Sbjct: 97  NKIKD---------------LSSLKDL-KKLKSLSLEHN--------GISDING-----L 127

Query: 202 SQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASL 261
              P L             E L +     +++                           L
Sbjct: 128 VHLPQL-------------ESLYLGNNKITDIT-------------------------VL 149

Query: 262 GNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSN 321
             LT+L  L L  N  S  I   L+ L +L  L LS N    ++  +  L  +   +L +
Sbjct: 150 SRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFS 206

Query: 322 NQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS 381
            +      +H S L     ++  + S             + +        +  H+ EF +
Sbjct: 207 QECLNKPINHQSNLVVPNTVKNTDGSLVTPE-------IISDDGDYEKPNVKWHLPEFTN 259

Query: 382 KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLK 434
           +     Y      +            L ++   S +  G           ++ 
Sbjct: 260 EVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRIT 312

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.4 bits (125), Expect = 5e-07
 Identities = 50/295 (16%), Positives = 92/295 (31%), Gaps = 34/295 (11%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSD 141
             I  +L       ++    +   L  +  +  +++D     +  G     N+T   L+ 
Sbjct: 22  ETIKDNLK----KKSVTDAVTQNELNSIDQIIANNSDI--KSVQ-GIQYLPNVTKLFLNG 74

Query: 142 SNINCKIPYEISFLKMST------------VVLDSLKNLSSSLTSLSLSDCILQGNFPIN 189
           + +      +I  L                  L SLK+L   L SLSL    +     + 
Sbjct: 75  NKLT-----DIKPLTNLKNLGWLFLDENKIKDLSSLKDLKK-LKSLSLEHNGISDINGLV 128

Query: 190 IFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLG 249
             HLP  + + L  N  +      +  T  ++ L + +   S++   +  L  L  L L 
Sbjct: 129 --HLPQLESLYLGNN-KITDITVLSRLTK-LDTLSLEDNQISDIV-PLAGLTKLQNLYLS 183

Query: 250 YSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF 309
            +        +L  L  L +L L          +  SNLV    +  +  S       I 
Sbjct: 184 KNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV-TPEIIS 240

Query: 310 NLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEY 364
           +       ++  + L              V I      F G +   L  +  + Y
Sbjct: 241 DDGDYEKPNVKWH-LPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSY 294

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 83.2 bits (206), Expect = 2e-17
 Identities = 58/289 (20%), Positives = 105/289 (36%), Gaps = 26/289 (8%)

Query: 305 IPDIF---NLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPL 361
           I  IF    L          + +   +    + L  +  +       + TI   +  L  
Sbjct: 9   INVIFPDPALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVT-TIEG-VQYLNN 64

Query: 362 LEYVRLSDNQLSGHIDEFPS-KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSG 420
           L  + L DNQ++  +    +   +  + LS N L     S+I  L ++  L L S   + 
Sbjct: 65  LIGLELKDNQIT-DLAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITD 121

Query: 421 IAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDE 480
           +      A L  L+ LYL  N ++  +     +      YLS+    +S     L    +
Sbjct: 122 VTP---LAGLSNLQVLYLDLNQITNISPL---AGLTNLQYLSIGNAQVSDLT-PLANLSK 174

Query: 481 LSYLDLSENKIDGQIPSWISEIGK-DSLSYVNLSHNFITKMKQIPW-KNLGYLDLRSNLL 538
           L+ L   +NKI     S IS +    +L  V+L +N I+ +  +    NL  + L +  +
Sbjct: 175 LTTLKADDNKI-----SDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI 229

Query: 539 QGPLPVPPSSLRVLLISNNQFTGEI-IHSICDIIALDVLDLSNNRLNGT 586
                   ++L V  +        I   +I D       +L+ N  +  
Sbjct: 230 TNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 75.1 bits (185), Expect = 8e-15
 Identities = 62/344 (18%), Positives = 120/344 (34%), Gaps = 56/344 (16%)

Query: 95  GNIPTNTSLFHLLHLQTL-NLSHNDFDYSEIS--SGFSRFRNLTHFSLSDSNINCKIPYE 151
           G+I   T++  +     L N        S ++     +    +T  S   + +       
Sbjct: 1   GSITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTT----- 55

Query: 152 ISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKF 211
                     ++ ++ L++ L  L L D          I  L       L     +    
Sbjct: 56  ----------IEGVQYLNN-LIGLELKDN--------QITDLAP-----LKNLTKI---- 87

Query: 212 PANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLH 271
                      L++S      +  +I  L+ +  L L  +Q     P  L  L+ L +L+
Sbjct: 88  ---------TELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLY 135

Query: 272 LMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSH 331
           L  N  +    S L+ L  L YL + +     ++  + NL++++     +N+++  I   
Sbjct: 136 LDLNQITN--ISPLAGLTNLQYLSIGNAQV-SDLTPLANLSKLTTLKADDNKISD-ISPL 191

Query: 332 GSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSN 391
            S L NL+ + L NN  S   P  L +   L  V L++  ++     + +  +    +  
Sbjct: 192 AS-LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKG 248

Query: 392 NRLQGSIPSSIFELVNLTDLQLDSNNFSGIAE-PYMFAKLIKLK 434
                  P++I +        L  N  S I    Y F + +  K
Sbjct: 249 PSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTFK 292

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 66.6 bits (163), Expect = 7e-12
 Identities = 46/277 (16%), Positives = 101/277 (36%), Gaps = 42/277 (15%)

Query: 573 LDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNEL 632
              +    + +  T+     +    ++ L      +  +I G    +N L  L L +N++
Sbjct: 21  AIKIAAGKSNVTDTVT--QADL-DGITTLSAFGTGVT-TIEGVQYLNN-LIGLELKDNQI 75

Query: 633 GGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKES 692
               P  L N TK+  L++    + +     +  L  ++ L L S +    + +  P   
Sbjct: 76  TDLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQ----ITDVTPLAG 127

Query: 693 FPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEI 752
              L++L L +N  +   P   L  L  ++ +S    ++                  +++
Sbjct: 128 LSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQV------------------SDL 166

Query: 753 EMQKILTVFTTIDFSSNGFDGEISQV--IGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLE 810
                L+  TT+    N    +IS +  +  L +L  ++L +N  +    S L N + L 
Sbjct: 167 TPLANLSKLTTLKADDN----KISDISPLASLPNLIEVHLKNNQISDV--SPLANTSNLF 220

Query: 811 SLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPI 847
            + L++  +  +      +L   +V+         P 
Sbjct: 221 IVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPA 257

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 80.0 bits (198), Expect = 3e-17
 Identities = 31/191 (16%), Positives = 72/191 (37%), Gaps = 11/191 (5%)

Query: 232 ELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQL 291
            +PDS    K     +LG S     +  +   +  LT + L + N +  + + +     +
Sbjct: 16  NIPDS--TFKAYLNGLLGQSS-TANI--TEAQMNSLTYITLANINVT-DL-TGIEYAHNI 68

Query: 292 TYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGT 351
             L +++         I  L+ +    +    +      + S L +L L+ +++++   +
Sbjct: 69  KDLTINNIHA-TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127

Query: 352 IPSWLFSLPLLEYVRLSDNQLSGHIDEFPS-KSLQNIYLSNNRLQGSIPSSIFELVNLTD 410
           I + + +LP +  + LS N     I    +   L+++ +  + +       I +   L  
Sbjct: 128 ILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQ 185

Query: 411 LQLDSNNFSGI 421
           L   S    G 
Sbjct: 186 LYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 3/130 (2%)

Query: 221 EYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGH 280
           + L ++    +   + I  L  L RL +           +L  LT LTLL + H+     
Sbjct: 69  KDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127

Query: 281 IPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVL 340
           I + ++ L ++  +DLS N    +I  +  L ++   ++  + +             L  
Sbjct: 128 ILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGI--EDFPKLNQ 185

Query: 341 IRLNNNSFSG 350
           +   + +  G
Sbjct: 186 LYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.3 bits (165), Expect = 7e-13
 Identities = 33/156 (21%), Positives = 68/156 (43%), Gaps = 6/156 (3%)

Query: 505 DSLSYVNLSHNFITKMKQIPW-KNLGYLDLRSNLLQGPLPVPP-SSLRVLLISNNQFTGE 562
           +SL+Y+ L++  +T +  I +  N+  L + +       P+   S+L  L I     T +
Sbjct: 44  NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSD 103

Query: 563 IIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWL 622
            I ++  + +L +LD+S++  + +I   I    P ++ +DL  N     I         L
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTL-PKVNSIDLSYNGAITDIMP-LKTLPEL 161

Query: 623 RSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKIND 658
           +SLN+  + +       + +  K+  L   +  I  
Sbjct: 162 KSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 30/220 (13%), Positives = 67/220 (30%), Gaps = 40/220 (18%)

Query: 304 EIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLE 363
            IPD           L  +  A    +    + +L  I L N + +      +     ++
Sbjct: 16  NIPDS-TFKAYLNGLLGQSSTANITEAQ---MNSLTYITLANINVTDLTG--IEYAHNIK 69

Query: 364 YVRLSDNQLSGHIDEFPS-KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIA 422
            + +++   + + +      +L+ + +    +      ++  L +LT L +  +     +
Sbjct: 70  DLTINNIHAT-NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD-DS 127

Query: 423 EPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELS 482
                  L K+  + LS+N         I    P                  L+T  EL 
Sbjct: 128 ILTKINTLPKVNSIDLSYNG-------AITDIMP------------------LKTLPELK 162

Query: 483 YLDLSENKIDGQIPSWISEIGK-DSLSYVNLSHNFITKMK 521
            L++  + +          I     L+ +      I   K
Sbjct: 163 SLNIQFDGVHD-----YRGIEDFPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 1/95 (1%)

Query: 750 TEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKL 809
           T       L+    +         +    +  L SL LL++SH+     I + +  L K+
Sbjct: 79  TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138

Query: 810 ESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLD 844
            S+DLS N     I  PL +L  L  LN+  + + 
Sbjct: 139 NSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 5e-11
 Identities = 30/222 (13%), Positives = 60/222 (27%), Gaps = 53/222 (23%)

Query: 622 LRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFH 681
             +  L  +         +     +  + + NI + D     +     ++ L + +    
Sbjct: 25  YLNGLLGQSSTANITEAQM---NSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH-- 77

Query: 682 GSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQD 741
                + P      L  L +   + +       L  L            L  L       
Sbjct: 78  --ATNYNPISGLSNLERLRIMGKDVTSDKIP-NLSGLT----------SLTLL------- 117

Query: 742 SVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPS 801
                                  D S +  D  I   I  L  +  ++LS+N     I  
Sbjct: 118 -----------------------DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M 153

Query: 802 SLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRL 843
            L  L +L+SL++  + V     + +     L+ L      +
Sbjct: 154 PLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 29/199 (14%), Positives = 73/199 (36%), Gaps = 12/199 (6%)

Query: 368 SDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMF 427
           +  + S      P  + +           +   +  ++ +LT + L + N + +      
Sbjct: 6   TGLKASQDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG---I 62

Query: 428 AKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNIS-AFPRFLRTQDELSYLDL 486
                +K L +++   +    +   S       L +   +++      L     L+ LD+
Sbjct: 63  EYAHNIKDLTINNIHAT---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 487 SENKIDGQIPSWISEIGKDSLSYVNLSHN-FITKMKQI-PWKNLGYLDLRSNLLQGPLPV 544
           S +  D  I + I+ + K  ++ ++LS+N  IT +  +     L  L+++ + +     +
Sbjct: 120 SHSAHDDSILTKINTLPK--VNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGI 177

Query: 545 PP-SSLRVLLISNNQFTGE 562
                L  L   +    G+
Sbjct: 178 EDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 26/154 (16%), Positives = 60/154 (38%), Gaps = 8/154 (5%)

Query: 566 SICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSL 625
           +   + +L  + L+N  +       I     ++  L + N       P   +  + L  L
Sbjct: 39  TEAQMNSLTYITLANINVTDLTG--IEYA-HNIKDLTINNIHATNYNP--ISGLSNLERL 93

Query: 626 NLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVR 685
            +   ++      +L   T + +LDI +   +D+    +  LP++  + L  N    ++ 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG---AIT 150

Query: 686 EFEPKESFPKLRILDLSINNFSGYLPERFLENLN 719
           +  P ++ P+L+ L++  +    Y        LN
Sbjct: 151 DIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLN 184

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 23/222 (10%), Positives = 65/222 (29%), Gaps = 68/222 (30%)

Query: 105 HLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDS 164
            +  L  + L++ +   ++++ G     N+   ++++ +                   + 
Sbjct: 42  QMNSLTYITLANINV--TDLT-GIEYAHNIKDLTINNIHAT---------------NYNP 83

Query: 165 LKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLD 224
           +  L S+L  L +    +                                          
Sbjct: 84  ISGL-SNLERLRIMGKDVT----------------------------------------- 101

Query: 225 VSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSS 284
                 S+   ++  L  L  L + +S     +   +  L ++  + L +N     I   
Sbjct: 102 ------SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MP 154

Query: 285 LSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAG 326
           L  L +L  L++  +    +   I +  +++     +  + G
Sbjct: 155 LKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 6e-09
 Identities = 34/226 (15%), Positives = 64/226 (28%), Gaps = 50/226 (22%)

Query: 596 PSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIK 655
            +           + +   T A+ N L  + L N  +       +     ++ L I NI 
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH 77

Query: 656 INDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFL 715
             +  P  +  L  L+ L +       +  +         L +LD+S +     +    +
Sbjct: 78  ATNYNP--ISGLSNLERLRIMGKDV--TSDKIPNLSGLTSLTLLDISHSAHDDSILT-KI 132

Query: 716 ENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEI 775
             L           K+  +                              D S NG   +I
Sbjct: 133 NTLP----------KVNSI------------------------------DLSYNGAITDI 152

Query: 776 SQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAG 821
              +  L  L+ LN+  +         + +  KL  L   S  + G
Sbjct: 153 M-PLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 8/93 (8%)

Query: 758 LTVFTTIDFSSNGFDGEISQV--IGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLS 815
           +   T I  ++      ++ +  I   H+++ L +++ H T    + +  L+ LE L + 
Sbjct: 43  MNSLTYITLANIN----VTDLTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIM 96

Query: 816 SNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIP 848
             +V       L+ LTSL++L++SH+  D  I 
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 71/218 (32%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSD 141
           ++  + L+      N+   T + +  +++ L +++     +   +  S   NL    +  
Sbjct: 45  SLTYITLANI----NVTDLTGIEYAHNIKDLTINNIHA--TNY-NPISGLSNLERLRIMG 97

Query: 142 SNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRL 201
            ++             ++  + +L  L +SLT L +S      +    I  LP    I L
Sbjct: 98  KDV-------------TSDKIPNLSGL-TSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143

Query: 202 SQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASL 261
           S N                               +I ++                    L
Sbjct: 144 SYNG------------------------------AITDIM------------------PL 155

Query: 262 GNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSN 299
             L +L  L++  +         + +  +L  L   S 
Sbjct: 156 KTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQ 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 50/236 (21%), Positives = 91/236 (38%), Gaps = 21/236 (8%)

Query: 304 EIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLE 363
           +I       +    +L    +   +    + L ++  I  NN+    ++   +  LP + 
Sbjct: 16  QIFSDDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SVQG-IQYLPNVT 71

Query: 364 YVRLSDNQLSGHIDEFPS-KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIA 422
            + L+ N+L+  I    + K+L  ++L  N+++  + SS+ +L  L  L L+ N  S I 
Sbjct: 72  KLFLNGNKLT-DIKPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGISDIN 128

Query: 423 EPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELS 482
                  L +L+ LYL +N ++      + S   K   LSL    IS     L    +L 
Sbjct: 129 G---LVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQ 181

Query: 483 YLDLSENKIDGQIPSWISEIGK-DSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNL 537
            L LS+N I       +  +    +L  + L              NL   +   N 
Sbjct: 182 NLYLSKNHISD-----LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.3 bits (170), Expect = 7e-13
 Identities = 55/301 (18%), Positives = 104/301 (34%), Gaps = 43/301 (14%)

Query: 358 SLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNN 417
           +        L    ++  + +    S+  I  +N+ ++ S+   I  L N+T L L+ N 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNK 79

Query: 418 FSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRT 477
            + I      A L  L +L+L  N +             K   LSL    IS     L  
Sbjct: 80  LTDIKP---LANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGISDIN-GLVH 132

Query: 478 QDELSYLDLSENKIDGQIPSWISEIGK-DSLSYVNLSHNFITKMKQIPWKNLGYLDLRSN 536
             +L  L L  NKI       I+ + +   L  ++L  N I+ +  +           + 
Sbjct: 133 LPQLESLYLGNNKITD-----ITVLSRLTKLDTLSLEDNQISDIVPL-----------AG 176

Query: 537 LLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSP 596
           L         + L+ L +S N  +   + ++  +  LDVL+L +            N   
Sbjct: 177 L---------TKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVV 225

Query: 597 SLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKI 656
             +V +   + +    P   ++       N+  +        + V+    + + IG  K 
Sbjct: 226 PNTVKNTDGSLVT---PEIISDDGDYEKPNVKWHLPE---FTNEVSFIFYQPVTIGKAKA 279

Query: 657 N 657
            
Sbjct: 280 R 280

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 39/238 (16%), Positives = 83/238 (34%), Gaps = 21/238 (8%)

Query: 400 SSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKID--SPFPK 457
             IF      +   D+     + +     +L  +  +  +++ +       +      P 
Sbjct: 15  KQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-----SVQGIQYLPN 69

Query: 458 FSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGK-DSLSYVNLSHNF 516
            + L L+   ++     L     L +L L ENK+       +S +     L  ++L HN 
Sbjct: 70  VTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKV-----KDLSSLKDLKKLKSLSLEHNG 123

Query: 517 ITKMKQI-PWKNLGYLDLRSNLLQGPLPVPP-SSLRVLLISNNQFTGEIIHSICDIIALD 574
           I+ +  +     L  L L +N +     +   + L  L + +NQ +   I  +  +  L 
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQ 181

Query: 575 VLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNEL 632
            L LS N +  +    +     +L VL+L +           +      ++   +  L
Sbjct: 182 NLYLSKNHI--SDLRALAGL-KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.9 bits (156), Expect = 5e-11
 Identities = 53/250 (21%), Positives = 91/250 (36%), Gaps = 39/250 (15%)

Query: 596 PSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIK 655
                 +L+   +  ++     E N +  +  NN+++     Q +     V  L +   K
Sbjct: 24  AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNK 79

Query: 656 INDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFL 715
           + D  P  L NL  L  L L  NK    V++    +   KL+ L L  N  S       L
Sbjct: 80  LTDIKP--LANLKNLGWLFLDENK----VKDLSSLKDLKKLKSLSLEHNGISDING---L 130

Query: 716 ENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEI 775
            +L  + ++     K+                  T+I +   LT   T+    N    +I
Sbjct: 131 VHLPQLESLYLGNNKI------------------TDITVLSRLTKLDTLSLEDN----QI 168

Query: 776 SQV--IGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSL 833
           S +  +  L  L+ L LS NH +     +L  L  L+ L+L S     K     ++L   
Sbjct: 169 SDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVP 226

Query: 834 SVLNLSHNRL 843
           + +  +   L
Sbjct: 227 NTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 52/316 (16%), Positives = 101/316 (31%), Gaps = 54/316 (17%)

Query: 105 HLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDS 164
                   NL       ++     +   ++     ++S+I       +         +  
Sbjct: 22  AFAETIKDNLKKKSV--TDA-VTQNELNSIDQIIANNSDIK-----SVQG-------IQY 66

Query: 165 LKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLD 224
           L N    +T L L+           +  +       L+   +L              +L 
Sbjct: 67  LPN----VTKLFLNGN--------KLTDIKP-----LANLKNL-------------GWLF 96

Query: 225 VSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSS 284
           + E    +L  S+ +LK L  L L ++         L +L QL  L+L +N  +    + 
Sbjct: 97  LDENKVKDL-SSLKDLKKLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKIT--DITV 151

Query: 285 LSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLN 344
           LS L +L  L L  N    +I  +  LT++    LS N ++       + L+NL ++ L 
Sbjct: 152 LSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKNHISDLRAL--AGLKNLDVLELF 208

Query: 345 NNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE 404
           +        +   +L +   V+ +D  L            +   +  + L        F 
Sbjct: 209 SQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWH-LPEFTNEVSFI 267

Query: 405 LVNLTDLQLDSNNFSG 420
                 +      F G
Sbjct: 268 FYQPVTIGKAKARFHG 283

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.7 bits (145), Expect = 9e-10
 Identities = 51/309 (16%), Positives = 103/309 (33%), Gaps = 53/309 (17%)

Query: 126 SGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGN 185
                F      +L   ++               V  + L ++      +  ++      
Sbjct: 18  FSDDAFAETIKDNLKKKSVT------------DAVTQNELNSI----DQIIANNS----- 56

Query: 186 FPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGR 245
              +I  +       +   P++               L ++    +++   + NLK LG 
Sbjct: 57  ---DIKSVQG-----IQYLPNV-------------TKLFLNGNKLTDIKP-LANLKNLGW 94

Query: 246 LMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEI 305
           L L  ++        L +L +L  L L HN  S    + L +L QL  L L +N    +I
Sbjct: 95  LFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKIT-DI 149

Query: 306 PDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYV 365
             +  LT++    L +NQ++  +P   + L  L  + L+ N  S      L  L  L+ +
Sbjct: 150 TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKNHISDLRA--LAGLKNLDVL 205

Query: 366 RLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEP- 424
            L   +         S  +    + N       P  I +  +     +  +      E  
Sbjct: 206 ELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVS 265

Query: 425 YMFAKLIKL 433
           ++F + + +
Sbjct: 266 FIFYQPVTI 274

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 34/182 (18%), Positives = 74/182 (40%), Gaps = 21/182 (11%)

Query: 668 PELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSAD 727
           P     +         +++    ++F +    +L   + +  +       LN++  + A+
Sbjct: 2   PLGSETITVPTP----IKQIFSDDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIAN 54

Query: 728 EGKLRYLGE-EYYQDSVVVTLKG---TEIEMQKILTVFTTIDFSSNGFDGEISQV--IGK 781
              ++ +   +Y  +   + L G   T+I+    L     +    N    ++  +  +  
Sbjct: 55  NSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN----KVKDLSSLKD 110

Query: 782 LHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHN 841
           L  L+ L+L HN  +    + L +L +LESL L +N +       L+ LT L  L+L  N
Sbjct: 111 LKKLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDN 166

Query: 842 RL 843
           ++
Sbjct: 167 QI 168

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 47/267 (17%), Positives = 86/267 (32%), Gaps = 77/267 (28%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSD 141
           ++  +  +    + +I +   + +L ++  L L+ N    ++I    +  +NL    L +
Sbjct: 47  SIDQIIAN----NSDIKSVQGIQYLPNVTKLFLNGNKL--TDI-KPLANLKNLGWLFLDE 99

Query: 142 SNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRL 201
           + +                 L SLK+L   L SLSL            I  +       L
Sbjct: 100 NKVKD---------------LSSLKDL-KKLKSLSLEHN--------GISDING-----L 130

Query: 202 SQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASL 261
              P L             E L +     +++                           L
Sbjct: 131 VHLPQL-------------ESLYLGNNKITDIT-------------------------VL 152

Query: 262 GNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSN 321
             LT+L  L L  N  S  I   L+ L +L  L LS N    ++  +  L  +   +L +
Sbjct: 153 SRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFS 209

Query: 322 NQLAGPIPSHGSRLQNLVLIRLNNNSF 348
            +      +H S L     ++  + S 
Sbjct: 210 QECLNKPINHQSNLVVPNTVKNTDGSL 236

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 20/187 (10%)

Query: 265 TQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQL 324
            +    +L   + +    +  + L  +  +  +++     +  I  L  V +  L  N+L
Sbjct: 19  AETIKANLKKKSVT-DAVTQ-NELNSIDQIIANNSDI-KSVQGIQYLPNVRYLALGGNKL 75

Query: 325 AGPIPSHGS--RLQNLVLIRLNNNSFSGTIPSWLF-SLPLLEYVRLSDNQL----SGHID 377
                   +   L NL  + L  N    ++P+ +F  L  L+ + L +NQL     G  D
Sbjct: 76  H----DISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFD 130

Query: 378 EFPSKSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYL 436
           +    +L  + L++N+LQ S+P  +F+ L NLT+L L  N    + E  +F KL +LK L
Sbjct: 131 KL--TNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEG-VFDKLTQLKDL 186

Query: 437 YLSHNSL 443
            L  N L
Sbjct: 187 RLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 68.9 bits (169), Expect = 6e-13
 Identities = 43/173 (24%), Positives = 66/173 (38%), Gaps = 26/173 (15%)

Query: 281 IPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLA--GPIPSHGSRLQNL 338
            P       +    +L   S   +      L  +     +N+ +     I      L N+
Sbjct: 13  FPDDAF--AETIKANLKKKSV-TDAVTQNELNSIDQIIANNSDIKSVQGIQY----LPNV 65

Query: 339 VLIRLNNNSFSGTIPSWLF-SLPLLEYVRLSDNQLSGHIDEFPSK------SLQNIYLSN 391
             + L  N     I +     L  L Y+ L+ NQL       P+       +L+ + L  
Sbjct: 66  RYLALGGNKLH-DISA--LKELTNLTYLILTGNQLQ----SLPNGVFDKLTNLKELVLVE 118

Query: 392 NRLQGSIPSSIF-ELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSL 443
           N+LQ S+P  +F +L NLT L L  N    +    +F KL  L  L LS+N L
Sbjct: 119 NQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSL-PKGVFDKLTNLTELDLSYNQL 169

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 54/259 (20%), Positives = 91/259 (35%), Gaps = 70/259 (27%)

Query: 381 SKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSH 440
                   L    +     +   EL ++  +  ++++   +        L  ++YL L  
Sbjct: 18  FAETIKANLKKKSVT-DAVTQN-ELNSIDQIIANNSDIKSVQG---IQYLPNVRYLALGG 72

Query: 441 NSL-SLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWI 499
           N L  +                        A            YL L+ N++   +P+ +
Sbjct: 73  NKLHDIS-----------------------ALKELTNLT----YLILTGNQL-QSLPNGV 104

Query: 500 SEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPV----PPSSLRVLLIS 555
                D L+                  NL  L L  N LQ  LP       ++L  L ++
Sbjct: 105 F----DKLT------------------NLKELVLVENQLQS-LPDGVFDKLTNLTYLNLA 141

Query: 556 NNQFTGEIIHSICD-IIALDVLDLSNNRLNGTIPECIGNFS--PSLSVLDLRNNRLNGSI 612
           +NQ    +   + D +  L  LDLS N+L  ++PE  G F     L  L L  N+L  S+
Sbjct: 142 HNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPE--GVFDKLTQLKDLRLYQNQLK-SV 196

Query: 613 P-GTFAESNWLRSLNLNNN 630
           P G F     L+ + L++N
Sbjct: 197 PDGVFDRLTSLQYIWLHDN 215

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.9 bits (184), Expect = 2e-14
 Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 16/148 (10%)

Query: 260 SLGNLTQLTLLHLMHNNFSGHIPS-SLSNLVQLTYLDLSSNSFFGEIP-DIF-NLTQVSF 316
           +   LT L  L L HN+ +  I S +   +  L YLDLSSN     +   +F +L  +  
Sbjct: 59  TPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQALEV 116

Query: 317 FDLSNNQLAGPIPSHG-SRLQNLVLIRLNNNSFSGTIPSWLF----SLPLLEYVRLSDNQ 371
             L NN +   +  +    +  L  + L+ N  S   P  L      LP L  + LS N+
Sbjct: 117 LLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNK 174

Query: 372 LS----GHIDEFPSKSLQNIYLSNNRLQ 395
           L       + + P+     +YL NN L+
Sbjct: 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.4 bits (175), Expect = 3e-13
 Identities = 50/176 (28%), Positives = 77/176 (43%), Gaps = 21/176 (11%)

Query: 257 VPASLGNLTQLTLLHLMHNNFSGHIPS--SLSNLVQLTYLDLSSNSFFGEIP-DIF-NLT 312
           VP SL + T L  L L HNN S  + +  + + L  L  L LS N     I  + F  + 
Sbjct: 33  VPQSLPSYTAL--LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVP 88

Query: 313 QVSFFDLSNNQLAGPIPSHG-SRLQNLVLIRLNNNSFSGTIPSWLFS-LPLLEYVRLSDN 370
            + + DLS+N L   +     S LQ L ++ L NN     +    F  +  L+ + LS N
Sbjct: 89  NLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQN 146

Query: 371 QLS----GHIDEFPS-KSLQNIYLSNNRLQGSIPSSIFE-LVNLT--DLQLDSNNF 418
           Q+S      I +      L  + LS+N+L+  +P +  + L       L L +N  
Sbjct: 147 QISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.1 bits (156), Expect = 6e-11
 Identities = 55/257 (21%), Positives = 82/257 (31%), Gaps = 85/257 (33%)

Query: 383 SLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNS 442
           +   +  S  +L  ++P S+        L L  NN S +   +   +L  L  L LSHN 
Sbjct: 19  ASNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH 75

Query: 443 LSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEI 502
           L+      I S                AF   +     L YLDLS N +           
Sbjct: 76  LN-----FISS---------------EAF-VPVP---NLRYLDLSSNHL----------- 100

Query: 503 GKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGE 562
                               +       L                +L VLL+ NN     
Sbjct: 101 ------------------HTLDEFLFSDL---------------QALEVLLLYNNH---- 123

Query: 563 IIHSI-----CDIIALDVLDLSNNRLNGTIPECIGNFS--PSLSVLDLRNNRLNGSIPGT 615
            I  +      D+  L  L LS N+++    E I + +  P L +LDL +N+L       
Sbjct: 124 -IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182

Query: 616 FA--ESNWLRSLNLNNN 630
                +     L L+NN
Sbjct: 183 LQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 46/160 (28%), Positives = 65/160 (40%), Gaps = 14/160 (8%)

Query: 573 LDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIP-GTFAESNWLRSLNLNNNE 631
             +LDLS+N L+    E       +L  L L +N LN  I    F     LR L+L++N 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH 99

Query: 632 LGGAIPQSLVNCTKVEVLDIGNIKI----NDAFPYWLGNLPELQVLVLRSNKFHGSVRE- 686
           L         +   +EVL + N  I     +AF     ++ +LQ L L  N+        
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE----DMAQLQKLYLSQNQIS-RFPVE 154

Query: 687 -FEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVS 725
             +     PKL +LDLS N     LP   L+ L A     
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNG 193

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.5 bits (139), Expect = 8e-09
 Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 26/163 (15%)

Query: 530 YLDLRSNLLQ----GPLPVPPSSLRVLLISNNQFTGEIIHSI-----CDIIALDVLDLSN 580
            LDL  N L        P   ++L  LL+S+N      ++ I       +  L  LDLS+
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-----LNFISSEAFVPVPNLRYLDLSS 97

Query: 581 NRLNGTIPECIGNFS--PSLSVLDLRNNRLNGSIP-GTFAESNWLRSLNLNNNELGGAIP 637
           N L+ T+ E    FS   +L VL L NN +   +    F +   L+ L L+ N++    P
Sbjct: 98  NHLH-TLDE--FLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQI-SRFP 152

Query: 638 ----QSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLR 676
               +      K+ +LD+ + K+       L  LP      L 
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 38/189 (20%), Positives = 60/189 (31%), Gaps = 32/189 (16%)

Query: 666 NLP-ELQVLVLRSNKFHGSVREFEPKESF---PKLRILDLSINNFSGYLPERFLENLNAM 721
           +LP    +L L  N           + +      L  L LS N+ + ++       +  +
Sbjct: 36  SLPSYTALLDLSHNNL----SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNL 90

Query: 722 RNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGK 781
           R +      L  L E  + D                L     +   +N            
Sbjct: 91  RYLDLSSNHLHTLDEFLFSD----------------LQALEVLLLYNNHIVVVDRNAFED 134

Query: 782 LHSLRLLNLSHNHFTGQIP----SSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSV-- 835
           +  L+ L LS N  + + P         L KL  LDLSSN +       L  L +     
Sbjct: 135 MAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193

Query: 836 LNLSHNRLD 844
           L L +N L+
Sbjct: 194 LYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 45/215 (20%), Positives = 70/215 (32%), Gaps = 58/215 (26%)

Query: 96  NIPTNTSLFHLLHLQTLNLSHNDFDYSEISSG--FSRFRNLTHFSLSDSNINCKIPYEIS 153
           ++P+ T          L+LSHN+   S + +    +R  NL    LS +++N  I  E  
Sbjct: 36  SLPSYT--------ALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSE-- 82

Query: 154 FLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIF-HLPNPQMIRLSQNPSLAGKFP 212
                      + NL      L LS   L       +F  L   +++ L  N        
Sbjct: 83  -------AFVPVPNL----RYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNH------- 123

Query: 213 ANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPA----SLGNLTQLT 268
                  I  +D    +F ++         L +L L  +Q     P         L +L 
Sbjct: 124 -------IVVVD--RNAFEDMAQ-------LQKLYLSQNQISR-FPVELIKDGNKLPKLM 166

Query: 269 LLHLMHNNFSGHIPSSLSNLVQLT--YLDLSSNSF 301
           LL L  N       + L  L       L L +N  
Sbjct: 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 781 KLHSLRLLNLSHNHFTGQIPS-SLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLS 839
           +L +L  L LSHNH    I S +   +  L  LDLSSN++        + L +L VL L 
Sbjct: 62  RLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120

Query: 840 HNRLDGPIPHG 850
           +N +   +   
Sbjct: 121 NNHIVV-VDRN 130

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 72.8 bits (179), Expect = 1e-13
 Identities = 50/335 (14%), Positives = 100/335 (29%), Gaps = 59/335 (17%)

Query: 382 KSLQNIYLSNNRLQG----SIPSSIFELVNLTDLQLDSNNFS-----GIAEPYMFAKLIK 432
            S++   L  + +      S+ + + E  ++ ++ L  N         ++E    A    
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSE--NIASKKD 61

Query: 433 LKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKID 492
           L+    S                            +    + L    +L  + LS+N   
Sbjct: 62  LEIAEFSDIFTGRVK--------------DEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107

Query: 493 GQIPSWISEIGKD--SLSYVNLSHNFITK--MKQIPWKNLGYLDLRSNLLQGPLPVPPSS 548
                 + +       L ++ L +N +      +I  + L  L +       P       
Sbjct: 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA-RALQELAVNKKAKNAP------P 160

Query: 549 LRVLLISNNQFTGEIIHSICDIIA----LDVLDLSNNRLNGT-IPECIGNF---SPSLSV 600
           LR ++   N+     +            L  + +  N +    I   +         L V
Sbjct: 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV 220

Query: 601 LDLRNNRLNG----SIPGTFAESNWLRSLNLNNNELGG----AIPQSLVNC--TKVEVLD 650
           LDL++N        ++         LR L LN+  L      A+  +        ++ L 
Sbjct: 221 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLR 280

Query: 651 IGNIKINDAFPYWLG-----NLPELQVLVLRSNKF 680
           +   +I       L       +P+L  L L  N+F
Sbjct: 281 LQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 70.9 bits (174), Expect = 5e-13
 Identities = 42/283 (14%), Positives = 86/283 (30%), Gaps = 57/283 (20%)

Query: 591 IGNFSPSLSVLDLRNNRLNG----SIPGTFAESNWLRSLNLNNNELGG----AIPQSLVN 642
           +  FS  +    L+ + +      S+     E + ++ + L+ N +G      + +++ +
Sbjct: 1   MARFS--IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIAS 58

Query: 643 CTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLS 702
              +E+ +  +I            L  L +  L                  PKL  + LS
Sbjct: 59  KKDLEIAEFSDIFTGRVKDEIPEALRLL-LQALLKC---------------PKLHTVRLS 102

Query: 703 INNF--------SGYLPE-RFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIE 753
            N F          +L +   LE+L    N    +     +             +    +
Sbjct: 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA-GAKIAR--------ALQELAVNK 153

Query: 754 MQKILTVFTTIDFSSNGFDGE----ISQVIGKLHSLRLLNLSHNHFTGQ-----IPSSLG 804
             K      +I    N  +       ++       L  + +  N    +     +   L 
Sbjct: 154 KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA 213

Query: 805 NLAKLESLDLSSNNV----AGKIPKPLTSLTSLSVLNLSHNRL 843
              +L+ LDL  N      +  +   L S  +L  L L+   L
Sbjct: 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 67.0 bits (164), Expect = 9e-12
 Identities = 48/348 (13%), Positives = 100/348 (28%), Gaps = 87/348 (25%)

Query: 548 SLRVLLISNNQFTGEIIHSICDIIA----LDVLDLSNNRLNGTIPECIGNF---SPSLSV 600
           S+    +  +  T E   S+  ++     +  + LS N +       +         L +
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 601 LDLRNNRLN----------GSIPGTFAESNWLRSLNLNNNELGG----AIPQSLVNCTKV 646
            +  +                +     +   L ++ L++N  G      +   L   T +
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 647 EVLDIGNIKINDA-------------FPYWLGNLPELQVLVLRSNKF-HGSVREF-EPKE 691
           E L + N  +                      N P L+ ++   N+  +GS++E+ +  +
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184

Query: 692 SFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTE 751
           S   L  + +  N                       EG    L E               
Sbjct: 185 SHRLLHTVKMVQNGIR-------------------PEGIEHLLLE--------------- 210

Query: 752 IEMQKILTVFTTIDFSSNGFDGE----ISQVIGKLHSLRLLNLSHNHFTGQ----IPSSL 803
                       +D   N F       ++  +    +LR L L+    + +    +  + 
Sbjct: 211 --GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268

Query: 804 GNLA--KLESLDLSSNNV----AGKIPKPL-TSLTSLSVLNLSHNRLD 844
             L    L++L L  N +       +   +   +  L  L L+ NR  
Sbjct: 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 55/334 (16%), Positives = 102/334 (30%), Gaps = 71/334 (21%)

Query: 318 DLSNNQL----AGPIPSHGSRLQNLVLIRLNNNSFSGT----IPSWLFSLPLLEYVRLSD 369
            L  + +       + +      ++  I L+ N+        +   + S   LE    SD
Sbjct: 10  SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 69

Query: 370 NQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNF-----SGIAEP 424
                  DE P                 +  ++ +   L  ++L  N F       + + 
Sbjct: 70  IFTGRVKDEIPEAL------------RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID- 116

Query: 425 YMFAKLIKLKYLYLSHNS------------LSLGNTFKIDSPFPKFSYLSLSACNI---- 468
              +K   L++LYL +N             L      K     P    +      +    
Sbjct: 117 -FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175

Query: 469 -SAFPRFLRTQDELSYLDLSENKIDGQ-IPSWISEIGKD--SLSYVNLSHNFITKMKQIP 524
              + +  ++   L  + + +N I  + I   + E       L  ++L  N  T      
Sbjct: 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT------ 229

Query: 525 WKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIA------LDVLDL 578
             +LG   L   L   P      +LR L +++   +     ++ D  +      L  L L
Sbjct: 230 --HLGSSALAIALKSWP------NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL 281

Query: 579 SNNRLNG----TIPECIGNFSPSLSVLDLRNNRL 608
             N +      T+   I    P L  L+L  NR 
Sbjct: 282 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 58.2 bits (141), Expect = 5e-09
 Identities = 43/277 (15%), Positives = 76/277 (27%), Gaps = 61/277 (22%)

Query: 261 LGNLTQLTLLHLMHNNFS----------GHIPSSLSNLVQLTYLDLSSNSF-------FG 303
           + +   L +                     +  +L    +L  + LS N+F         
Sbjct: 56  IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI 115

Query: 304 EIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLE 363
           +   +   T +    L NN L GP            L  L  N  +   P        L 
Sbjct: 116 DF--LSKHTPLEHLYLHNNGL-GP---QAGAKIARALQELAVNKKAKNAPP-------LR 162

Query: 364 YVRLSDNQLSG----HIDEF--PSKSLQNIYLSNNRL-----QGSIPSSIFELVNLTDLQ 412
            +    N+L         +     + L  + +  N +     +  +   +     L  L 
Sbjct: 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD 222

Query: 413 LDSNNF-----SGIAEPYMFAKLIKLKYLYLSHNSLS------LGNTFKIDSPFPKFSYL 461
           L  N F     S +A          L+ L L+   LS      + + F           L
Sbjct: 223 LQDNTFTHLGSSALAI--ALKSWPNLRELGLNDCLLSARGAAAVVDAFS-KLENIGLQTL 279

Query: 462 SLSACNIS-----AFPRFLRT-QDELSYLDLSENKID 492
            L    I           +     +L +L+L+ N+  
Sbjct: 280 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.1 bits (107), Expect = 8e-05
 Identities = 49/344 (14%), Positives = 97/344 (28%), Gaps = 80/344 (23%)

Query: 102 SLFHLLHLQTLNLSHNDFDY---SEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMS 158
            L     ++ + LS N         +S   +  ++L     SD             L+  
Sbjct: 27  VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR-- 84

Query: 159 TVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTS 218
            ++L +L      L ++ LSD          +          LS++  L           
Sbjct: 85  -LLLQALLKC-PKLHTVRLSDNAFGPTAQEPLIDF-------LSKHTPL----------- 124

Query: 219 PIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFS 278
             E+L +                      +  +     V     N   L  +    N   
Sbjct: 125 --EHLYLHNNGLGP----------QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172

Query: 279 G----HIPSSLSNLVQLTYLDLSSNSF--FGEIPDIFNLTQVSFFDLSNNQLAGPIPSHG 332
                    +  +   L  + +  N     G    +          L+            
Sbjct: 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG-------LAYC---------- 215

Query: 333 SRLQNLVLIRLNNNSFSGT----IPSWLFSLPLLEYVRLSDNQ--------LSGHIDEFP 380
              Q L ++ L +N+F+      +   L S P L  + L+D          +     +  
Sbjct: 216 ---QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272

Query: 381 SKSLQNIYLSNNRLQGSIPSSIFELV-----NLTDLQLDSNNFS 419
           +  LQ + L  N ++     ++  ++     +L  L+L+ N FS
Sbjct: 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 40/183 (21%)

Query: 268 TLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFN-LTQVSFFDLSNNQLAG 326
             L L     +    ++   L +LT+L+L  N        +F+ LT++    L+NNQLA 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 327 PIPSHGSRLQNLVLIRLNNNSFSGTIPSWLF-SLPLLEYVRLSDNQLSGHIDEFPSK--- 382
                                   ++P  +F  L  L+ + L  NQL       PS    
Sbjct: 97  ------------------------SLPLGVFDHLTQLDKLYLGGNQLK----SLPSGVFD 128

Query: 383 ---SLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYL 438
               L+ + L+ N+LQ SIP+  F+ L NL  L L +N    +     F +L KL+ + L
Sbjct: 129 RLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHG-AFDRLGKLQTITL 186

Query: 439 SHN 441
             N
Sbjct: 187 FGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 11/132 (8%)

Query: 318 DLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLF-SLPLLEYVRLSDNQL---- 372
           DL +  LA    +    L  L  + L+ N    T+ + +F  L  L  + L++NQL    
Sbjct: 41  DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 373 SGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAKLI 431
            G  D      L  +YL  N+L+ S+PS +F+ L  L +L+L++N    I     F KL 
Sbjct: 100 LGVFDHLTQ--LDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAG-AFDKLT 155

Query: 432 KLKYLYLSHNSL 443
            L+ L LS N L
Sbjct: 156 NLQTLSLSTNQL 167

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 65.5 bits (160), Expect = 7e-12
 Identities = 49/154 (31%), Positives = 68/154 (44%), Gaps = 9/154 (5%)

Query: 245 RLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGE 304
           +L L  +       A+   LT+LT L+L +N           +L +L  L L++N     
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98

Query: 305 IPDIF-NLTQVSFFDLSNNQLAGPIPSHG--SRLQNLVLIRLNNNSFSGTIPSWLF-SLP 360
              +F +LTQ+    L  NQL   +P  G   RL  L  +RLN N    +IP+  F  L 
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLKS-LP-SGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLT 155

Query: 361 LLEYVRLSDNQL-SGHIDEFPS-KSLQNIYLSNN 392
            L+ + LS NQL S     F     LQ I L  N
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 15/122 (12%)

Query: 328 IPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLS----GHIDEFPSKS 383
           IP+   +L       L +   +    +    L  L ++ L  NQL     G  D+     
Sbjct: 33  IPADTEKL------DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL--TE 84

Query: 384 LQNIYLSNNRLQGSIPSSIF-ELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNS 442
           L  + L+NN+L  S+P  +F  L  L  L L  N    +    +F +L KLK L L+ N 
Sbjct: 85  LGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNTNQ 142

Query: 443 LS 444
           L 
Sbjct: 143 LQ 144

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 52/247 (21%), Positives = 84/247 (34%), Gaps = 57/247 (23%)

Query: 381 SKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSH 440
           ++  + +      L  S+PS I    +   L L S   + +     F  L KL +L L +
Sbjct: 13  NEGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDY 68

Query: 441 NSLSL--GNTFKIDSPFPKFSYLSLSACNISAFPR--FLRTQDELSYLDLSENKIDGQIP 496
           N L       F  D    +   L L+   +++ P   F     +L  L L  N++   +P
Sbjct: 69  NQLQTLSAGVF--DDL-TELGTLGLANNQLASLPLGVFDHLT-QLDKLYLGGNQLKS-LP 123

Query: 497 SWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISN 556
           S +     D L+                   L  L L +N LQ    +P  +   L    
Sbjct: 124 SGVF----DRLT------------------KLKELRLNTNQLQS---IPAGAFDKL---- 154

Query: 557 NQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTF 616
                           L  L LS N+L  ++P    +    L  + L  N+ + S     
Sbjct: 155 --------------TNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDCSRCEIL 199

Query: 617 AESNWLR 623
             S W+R
Sbjct: 200 YLSQWIR 206

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 21/159 (13%)

Query: 484 LDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPW------KNLGYLDLRSNL 537
           LDL    +     +    + K  L+++NL +N +     +          LG L L +N 
Sbjct: 40  LDLQSTGLATLSDATFRGLTK--LTWLNLDYNQLQT---LSAGVFDDLTELGTLGLANNQ 94

Query: 538 LQGPLPV----PPSSLRVLLISNNQFTGEIIHSICD-IIALDVLDLSNNRLNGTIPECIG 592
           L   LP+      + L  L +  NQ    +   + D +  L  L L+ N+L  +IP    
Sbjct: 95  LAS-LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAF 151

Query: 593 NFSPSLSVLDLRNNRLNGSIP-GTFAESNWLRSLNLNNN 630
           +   +L  L L  N+L  S+P G F     L+++ L  N
Sbjct: 152 DKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 45/279 (16%), Positives = 98/279 (35%), Gaps = 53/279 (18%)

Query: 432 KLKYLYLSHNSLS------LGNTFKIDSPFPKFSYLSLSACNIS-----AFPRFLRTQDE 480
            +  L LS N+L       L   F   +     + L+LS  ++         + L     
Sbjct: 23  GVTSLDLSLNNLYSISTVELIQAFA--NTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80

Query: 481 -LSYLDLSENKIDGQIPSWISEIGKD---SLSYVNLSHNFIT--------KMKQIPWKNL 528
            ++ L+LS N +  +    + +       +++ ++L  N  +        +       ++
Sbjct: 81  NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI 140

Query: 529 GYLDLRSNLLQGP--------LPVPPSSLRVLLISNNQFTGEIIHSICDIIA-----LDV 575
             L+LR N L           L   P+++  L +  N    +    +   +A     +  
Sbjct: 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTS 200

Query: 576 LDLSNNRLNGT----IPECIGNFSPSLSVLDLRNNRLNGS----IPGTFAESNWLRSLNL 627
           LDLS N L       +     +    +  L+L  N L+G     +         L+++ L
Sbjct: 201 LDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260

Query: 628 NNNELGG-------AIPQSLVNCTKVEVLDIGNIKINDA 659
           + + +         A+  +  N  K+ ++D    +I+ +
Sbjct: 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 61.6 bits (150), Expect = 4e-10
 Identities = 53/262 (20%), Positives = 87/262 (33%), Gaps = 42/262 (16%)

Query: 474 FLRTQDELSYLDLSENKIDGQIPSWISEIGKD---SLSYVNLSHNFITKMKQIPWKNLGY 530
           F      ++ LDLS N +       + +   +   S++ +NLS N +             
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG------------ 64

Query: 531 LDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIA-----LDVLDLSNNRLNG 585
               S+ L   L   P+++  L +S N  + +    +   +A     + VLDL  N  + 
Sbjct: 65  -FKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123

Query: 586 T----IPECIGNFSPSLSVLDLRNNRLNG----SIPGTFAESNW-LRSLNLNNNELGGAI 636
                  +   N   S++ L+LR N L       +    A     + SLNL  N L    
Sbjct: 124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183

Query: 637 PQSLV-----NCTKVEVLDIGNIKINDAFPYWLG-----NLPELQVLVLRSNKFHGSVRE 686
              L          V  LD+    +       L          +  L L  N  HG   E
Sbjct: 184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243

Query: 687 F--EPKESFPKLRILDLSINNF 706
                K+S   L+ + L  +  
Sbjct: 244 NLKLLKDSLKHLQTVYLDYDIV 265

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.4 bits (139), Expect = 9e-09
 Identities = 60/404 (14%), Positives = 122/404 (30%), Gaps = 112/404 (27%)

Query: 273 MHNNFSGH-----IPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGP 327
           M+   + H     +    S    +T LDLS N          NL       +S  +L   
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLN----------NLY-----SISTVELIQA 45

Query: 328 IPSHGSRLQNLVLIRLNNNSFSGT----IPSWLFSLPL-LEYVRLSDNQLS-------GH 375
             +  + + +L    L+ NS        +   L ++P  +  + LS N LS         
Sbjct: 46  FANTPASVTSL---NLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102

Query: 376 IDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKY 435
                  ++  + L  N       S   +          +   S             +  
Sbjct: 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQA-------FSNLPAS-------------ITS 142

Query: 436 LYLSHNSLSLGNTFKIDSPFPKFSYLS--LSACNISAFPRFLRTQDELSYLDLSENKIDG 493
           L L  N L + ++            L   L+A   +           ++ L+L  N +  
Sbjct: 143 LNLRGNDLGIKSS----------DELIQILAAIPAN-----------VNSLNLRGNNLAS 181

Query: 494 QIPSWISEIGKD---SLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLR 550
           +  + +++       S++ ++LS N +            Y +L            P+ + 
Sbjct: 182 KNCAELAKFLASIPASVTSLDLSANLLG--------LKSYAELAYIFSS-----IPNHVV 228

Query: 551 VLLISNNQFTGEIIHSICDIIA----LDVLDLSNNRLNGTIPECIGNFS------PSLSV 600
            L +  N   G  + ++  +      L  + L  + +     E              + +
Sbjct: 229 SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL 288

Query: 601 LDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCT 644
           +D     ++ S   +   SN +R L+   +        SL+N  
Sbjct: 289 VDKNGKEIHPS--HSIPISNLIRELSGKADVP------SLLNQC 324

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 43/334 (12%), Positives = 100/334 (29%), Gaps = 92/334 (27%)

Query: 546 PSSLRVLLISNNQFTGEIIHSICDIIA-----LDVLDLSNNRLNGT----IPECIGNFSP 596
           P  +  L +S N         +    A     +  L+LS N L       + + +     
Sbjct: 21  PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80

Query: 597 SLSVLDLRNNRLNG----SIPGTFAESNW-LRSLNLNNNELGG----AIPQSLVNC-TKV 646
           +++ L+L  N L+      +  T A   + +  L+L  N+          Q+  N    +
Sbjct: 81  NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI 140

Query: 647 EVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNF 706
             L++    +       L         +L +   +              +  L+L  NN 
Sbjct: 141 TSLNLRGNDLGIKSSDELIQ-------ILAAIPAN--------------VNSLNLRGNNL 179

Query: 707 SGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDF 766
           +                    +     L +                 +  I    T++D 
Sbjct: 180 A-------------------SKN-CAELAKF----------------LASIPASVTSLDL 203

Query: 767 SSNGFDGE----ISQVIGKLHS-LRLLNLSHNHFTGQ----IPSSLGNLAKLESLDLSSN 817
           S+N    +    ++ +   + + +  LNL  N   G     +     +L  L+++ L  +
Sbjct: 204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263

Query: 818 NV-------AGKIPKPLTSLTSLSVLNLSHNRLD 844
            V          +     ++  + +++ +   + 
Sbjct: 264 IVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 56/360 (15%), Positives = 102/360 (28%), Gaps = 103/360 (28%)

Query: 526 KNLGYLDLRSNLLQGP--------LPVPPSSLRVLLISNNQFTGEIIHSICDIIA----- 572
             +  LDL  N L               P+S+  L +S N    +    +  I+A     
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 573 LDVLDLSNNRLNGT----IPECIGNFSPSLSVLDLRNNRLNGS----IPGTFAESNW-LR 623
           +  L+LS N L+      + + +     +++VLDL  N  +          F+     + 
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141

Query: 624 SLNLNNNELGG----AIPQSLVNC-TKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSN 678
           SLNL  N+LG      + Q L      V  L++    +       L          L S 
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAK-------FLASI 194

Query: 679 KFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEY 738
                            +  LDLS N                       +     L    
Sbjct: 195 PAS--------------VTSLDLSANLLG-------------------LKS-YAELAY-- 218

Query: 739 YQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGE----ISQVIGKLHSLRLLNLSHNH 794
                             I     +++   N   G     +  +   L  L+ + L ++ 
Sbjct: 219 --------------IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264

Query: 795 FTGQ-------IPSSLGNLAKLESLDLSSNNV--------AGKIPKPLTSLTSLSVLNLS 839
                      + ++  N+ K+  +D +   +        +  I +        S+LN  
Sbjct: 265 VKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQC 324

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 72.5 bits (177), Expect = 3e-13
 Identities = 58/351 (16%), Positives = 105/351 (29%), Gaps = 42/351 (11%)

Query: 372 LSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLI 431
           L G  +        ++      L       +     +  L L  +      E        
Sbjct: 235 LLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRN 294

Query: 432 KLKYLYLSHN-------SLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYL 484
           +  +++L           L       I +         L       + R   T ++L   
Sbjct: 295 RPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRC 354

Query: 485 DLSENKIDG--QIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPL 542
           +LS  K            E+ +            I  M+ +    L Y            
Sbjct: 355 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRAL--DPLLYEKETLQYFSTLK 412

Query: 543 PVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLD 602
            V P     L    ++F  E      +   + VL L++  L  T+   +      ++ LD
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQL-LLVTHLD 469

Query: 603 LRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPY 662
           L +NRL  ++P   A    L  L  ++N L     +++                      
Sbjct: 470 LSHNRLR-ALPPALAALRCLEVLQASDNAL-----ENVDG-------------------- 503

Query: 663 WLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPER 713
            + NLP LQ L+L +N+        +P  S P+L +L+L  N+       +
Sbjct: 504 -VANLPRLQELLLCNNRL-QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.6 bits (172), Expect = 1e-12
 Identities = 51/315 (16%), Positives = 99/315 (31%), Gaps = 13/315 (4%)

Query: 131 FRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINI 190
                H S  ++ ++      ++       +L  +     S+   +        N P ++
Sbjct: 244 VLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGR----NRPSHV 299

Query: 191 FHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGY 250
           +    P      Q P    +       S  E   + +             + L R  L  
Sbjct: 300 WLCDLPAASLNDQLPQHTFRVIWTGSDSQKE-CVLLKDRPECWCRDSATDEQLFRCELSV 358

Query: 251 SQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFN 310
            +    + + L +  +L  L   +      I   +  L  L Y   +   F   +  +  
Sbjct: 359 EKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF-STLKAVDP 416

Query: 311 LTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDN 370
           +      DL +  L              VL  L +   +  +   L  L L+ ++ LS N
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVL-HLAHKDLT-VLCH-LEQLLLVTHLDLSHN 473

Query: 371 QLSGHIDEFPS-KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAK 429
           +L        + + L+ +  S+N L+ ++   +  L  L +L L +N     A       
Sbjct: 474 RLRALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVS 531

Query: 430 LIKLKYLYLSHNSLS 444
             +L  L L  NSL 
Sbjct: 532 CPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.5 bits (151), Expect = 3e-10
 Identities = 41/260 (15%), Positives = 80/260 (30%), Gaps = 16/260 (6%)

Query: 593 NFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIG 652
                L ++D     +    P      + +   +L    L   +PQ              
Sbjct: 270 RMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQK 329

Query: 653 NIKI----NDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSG 708
              +     + +        +L    L   K      E E  +   +L   +      + 
Sbjct: 330 ECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELE-PENKWCLLTI 388

Query: 709 YLPERFLENLNAMRNVSADEGKLRYLG--EEYYQDSVVVTLKGTEIEMQKILTVFTTIDF 766
            L  R L+ L   +        L+ +      Y D +          ++        +  
Sbjct: 389 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHL 448

Query: 767 SSNGFDGEISQV--IGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIP 824
           +      +++ +  + +L  +  L+LSHN     +P +L  L  LE L  S N +  +  
Sbjct: 449 AHK----DLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL--ENV 501

Query: 825 KPLTSLTSLSVLNLSHNRLD 844
             + +L  L  L L +NRL 
Sbjct: 502 DGVANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.7 bits (149), Expect = 6e-10
 Identities = 41/280 (14%), Positives = 78/280 (27%), Gaps = 40/280 (14%)

Query: 265 TQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQL 324
             L    L             +         L  +       D     Q+   +LS  + 
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKS 361

Query: 325 AGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSL 384
              + S     + L  +   N     TI   + +L  L Y + +    S  +        
Sbjct: 362 T-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST-LKAVDPMRA 419

Query: 385 QNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS 444
             +    ++          E  ++  L L   + + +       +L+ + +L LSHN   
Sbjct: 420 AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH---LEQLLLVTHLDLSHN--- 473

Query: 445 LGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGK 504
                                  + A P  L     L  L  S+N ++      +  +  
Sbjct: 474 ----------------------RLRALPPALAALRCLEVLQASDNALEN-----VDGVAN 506

Query: 505 -DSLSYVNLSHNFITKMKQIPW----KNLGYLDLRSNLLQ 539
              L  + L +N + +   I        L  L+L+ N L 
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.5 bits (138), Expect = 1e-08
 Identities = 50/290 (17%), Positives = 90/290 (31%), Gaps = 56/290 (19%)

Query: 344 NNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIF 403
           +          W  S    E V L D       D    + L    LS  +    + S + 
Sbjct: 311 DQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELE 369

Query: 404 ELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSL 463
               L +L+ ++          M      L  L     +L   +T               
Sbjct: 370 SCKELQELEPENKWCLLTIILLM----RALDPLLYEKETLQYFST--------------- 410

Query: 464 SACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQI 523
                      L+  D +    L + +    + + + ++    +  ++L+H  +T +   
Sbjct: 411 -----------LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC-- 457

Query: 524 PWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRL 583
              +L  L                 +  L +S+N+    +  ++  +  L+VL  S+N L
Sbjct: 458 ---HLEQL---------------LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL 498

Query: 584 NGTIPECIGNFSPSLSVLDLRNNRLNG-SIPGTFAESNWLRSLNLNNNEL 632
              +   + N  P L  L L NNRL   +          L  LNL  N L
Sbjct: 499 E-NVDG-VANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 32/212 (15%)

Query: 318 DLSNNQLA---GPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLF-SLPLLEYVRLSDNQLS 373
           D S+ +L      IP+   +L       L +N  S ++PS  F  L  L  + L+DN+L 
Sbjct: 22  DCSSKKLTAIPSNIPADTKKL------DLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ 74

Query: 374 GHIDEFPS------KSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYM 426
                 P+      K+L+ +++++N+LQ ++P  +F+ LVNL +L+LD N    +  P +
Sbjct: 75  ----TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSL-PPRV 128

Query: 427 FAKLIKLKYLYLSHNSL-SL-GNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQ-DELSY 483
           F  L KL YL L +N L SL    F  D        L L    +   P     +  EL  
Sbjct: 129 FDSLTKLTYLSLGYNELQSLPKGVF--DK-LTSLKELRLYNNQLKRVPEGAFDKLTELKT 185

Query: 484 LDLSENKIDGQIPSWISEIGKDSLSYVNLSHN 515
           L L  N++  ++P    +   + L  + L  N
Sbjct: 186 LKLDNNQLK-RVPEGAFD-SLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.5 bits (168), Expect = 9e-13
 Identities = 60/256 (23%), Positives = 95/256 (37%), Gaps = 61/256 (23%)

Query: 381 SKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSH 440
           + +  ++  S+ +L  +IPS+I    +   L L SN  S +     F +L KL+ LYL+ 
Sbjct: 15  NNNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLND 70

Query: 441 NSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWIS 500
           N L                  +L A     F         L  L +++NK+   +P  + 
Sbjct: 71  NKLQ-----------------TLPA---GIFKEL----KNLETLWVTDNKLQ-ALPIGVF 105

Query: 501 EIGKDSLSYVNLSHNFITKMKQIPWK------NLGYLDLRSNLLQGPLPVPPSSLRVLLI 554
           +    +L+ + L  N +     +P +       L YL L  N LQ              +
Sbjct: 106 D-QLVNLAELRLDRNQLKS---LPPRVFDSLTKLTYLSLGYNELQS-------------L 148

Query: 555 SNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPG 614
               F          + +L  L L NN+L   +PE   +    L  L L NN+L     G
Sbjct: 149 PKGVFDK--------LTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEG 199

Query: 615 TFAESNWLRSLNLNNN 630
            F     L+ L L  N
Sbjct: 200 AFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.9 bits (138), Expect = 6e-09
 Identities = 58/255 (22%), Positives = 85/255 (33%), Gaps = 77/255 (30%)

Query: 96  NIPTNTSLFHLLHLQTLNLSHNDFDYSEISSG-FSRFRNLTHFSLSDSNINCKIPYEISF 154
           NIP +T        + L+L  N    S + S  F R   L    L+D+ +          
Sbjct: 34  NIPADT--------KKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQ--------- 74

Query: 155 LKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIF-HLPNPQMIRLSQNPSLAGKFPA 213
             +   +   LKNL     +L ++D  LQ   PI +F  L N   +RL +N         
Sbjct: 75  -TLPAGIFKELKNL----ETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQ-------- 120

Query: 214 NNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLM 273
                              LP  +               F          LT+LT L L 
Sbjct: 121 ----------------LKSLPPRV---------------FDS--------LTKLTYLSLG 141

Query: 274 HNNFSGHIPSSL-SNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQLAGPIPSH 331
           +N     +P  +   L  L  L L +N         F  LT++    L NNQL       
Sbjct: 142 YNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200

Query: 332 GSRLQNLVLIRLNNN 346
              L+ L +++L  N
Sbjct: 201 FDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 48/163 (29%), Positives = 70/163 (42%), Gaps = 23/163 (14%)

Query: 483 YLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIP------WKNLGYLDLRSN 536
            LDL  NK+   +PS         L  + L+ N +     +P       KNL  L +  N
Sbjct: 41  KLDLQSNKLS-SLPSKAFH-RLTKLRLLYLNDNKLQ---TLPAGIFKELKNLETLWVTDN 95

Query: 537 LLQGPLPV----PPSSLRVLLISNNQFTGEIIHSICD-IIALDVLDLSNNRLNGTIPECI 591
            LQ  LP+       +L  L +  NQ    +   + D +  L  L L  N L  ++P+  
Sbjct: 96  KLQA-LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPK-- 150

Query: 592 GNFS--PSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNEL 632
           G F    SL  L L NN+L     G F +   L++L L+NN+L
Sbjct: 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 50/213 (23%), Positives = 89/213 (41%), Gaps = 48/213 (22%)

Query: 523 IPWKNLGYLDLRSNLLQGPLPVPP------SSLRVLLISNNQFTGEIIHSICD-IIALDV 575
           IP  +   LDL+SN L     +P       + LR+L +++N+    +   I   +  L+ 
Sbjct: 35  IPA-DTKKLDLQSNKLSS---LPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLET 89

Query: 576 LDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIP-GTFAESNWLRSLNLNNNELGG 634
           L +++N+L   +P  + +   +L+ L L  N+L  S+P   F     L  L+L  NEL  
Sbjct: 90  LWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ- 146

Query: 635 AIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESF- 693
           ++P                      F      L  L+ L L +N+    V    P+ +F 
Sbjct: 147 SLP-------------------KGVF----DKLTSLKELRLYNNQLK-RV----PEGAFD 178

Query: 694 --PKLRILDLSINNFSGYLPERFLENLNAMRNV 724
              +L+ L L  N     +PE   ++L  ++ +
Sbjct: 179 KLTELKTLKLDNNQLKR-VPEGAFDSLEKLKML 210

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 60/271 (22%), Positives = 88/271 (32%), Gaps = 77/271 (28%)

Query: 577 DLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAI 636
           D S+ +L   IP  I         LDL++N+L+      F     LR L LN+N+L   +
Sbjct: 22  DCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTL 76

Query: 637 PQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESF--- 693
           P                      F      L  L+ L +  NK   ++    P   F   
Sbjct: 77  P-------------------AGIF----KELKNLETLWVTDNKLQ-AL----PIGVFDQL 108

Query: 694 PKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIE 753
             L  L L  N     LP R  ++L  +  +S    +L+ L                   
Sbjct: 109 VNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSL------------------- 148

Query: 754 MQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLD 813
                            FD        KL SL+ L L +N        +   L +L++L 
Sbjct: 149 -------------PKGVFD--------KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187

Query: 814 LSSNNVAGKIPKPLTSLTSLSVLNLSHNRLD 844
           L +N +         SL  L +L L  N  D
Sbjct: 188 LDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 36/159 (22%), Positives = 61/159 (38%), Gaps = 31/159 (19%)

Query: 265 TQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFN-LTQVSFFDLSNNQ 323
             +T + L  N      P + S   +L  +DLS+N      PD F  L  ++   L  N+
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 324 LAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLF-SLPLLEYVRLSDNQLSG-HIDEFPS 381
           +                           +P  LF  L  L+ + L+ N+++   +D F  
Sbjct: 92  IT-------------------------ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD 126

Query: 382 -KSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNF 418
             +L  + L +N+LQ +I    F  L  +  + L  N F
Sbjct: 127 LHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.9 bits (143), Expect = 7e-10
 Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 3/128 (2%)

Query: 245 RLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGE 304
            + L  +      P +     +L  + L +N  S   P +   L  L  L L  N     
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 305 IPDIF-NLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLF-SLPLL 362
              +F  L  +    L+ N++          L NL L+ L +N    TI    F  L  +
Sbjct: 96  PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAI 154

Query: 363 EYVRLSDN 370
           + + L+ N
Sbjct: 155 QTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 13/89 (14%)

Query: 363 EYVRLSDNQLSGHIDEFPSKS------LQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDS 415
             +RL  N +       P  +      L+ I LSNN++   +    F+ L +L  L L  
Sbjct: 35  TEIRLEQNTIK----VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG 89

Query: 416 NNFSGIAEPYMFAKLIKLKYLYLSHNSLS 444
           N  + +    +F  L  L+ L L+ N ++
Sbjct: 90  NKITEL-PKSLFEGLFSLQLLLLNANKIN 117

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 9/113 (7%)

Query: 383 SLQNIYLSNNRLQGSIPSSIF-ELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHN 441
           ++  I L  N ++  IP   F     L  + L +N  S +  P  F  L  L  L L  N
Sbjct: 33  TITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGN 90

Query: 442 SL-SL-GNTFKIDSPFPKFSYLSLSACNISAFPRFL-RTQDELSYLDLSENKI 491
            +  L  + F+          L L+A  I+       +    L+ L L +NK+
Sbjct: 91  KITELPKSLFE---GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 19/132 (14%)

Query: 511 NLSHNFITKMKQ---IPWKNLGYLDLRSNLLQGPLPVPP------SSLRVLLISNNQFTG 561
            L  N I  +      P+K L  +DL +N +     + P       SL  L++  N+ T 
Sbjct: 38  RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE---LAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 562 EIIHSICD-IIALDVLDLSNNRLNGTIPECIGNFS--PSLSVLDLRNNRLNGSIPGTFAE 618
           E+  S+ + + +L +L L+ N++N  +      F    +L++L L +N+L     GTF+ 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKIN-CLRV--DAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 619 SNWLRSLNLNNN 630
              +++++L  N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 17/139 (12%)

Query: 593 NFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIP----QSLVNCTKVEV 648
           N   +++ + L  N +    PG F+    LR ++L+NN++   +     Q L +      
Sbjct: 29  NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNS--- 84

Query: 649 LDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESF---PKLRILDLSINN 705
           L +   KI +        L  LQ+L+L +NK +  +      ++F     L +L L  N 
Sbjct: 85  LVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CL----RVDAFQDLHNLNLLSLYDNK 139

Query: 706 FSGYLPERFLENLNAMRNV 724
               + +     L A++ +
Sbjct: 140 LQT-IAKGTFSPLRAIQTM 157

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 32/207 (15%), Positives = 73/207 (35%), Gaps = 20/207 (9%)

Query: 333 SRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS-KSLQNIYLSN 391
             L N V   L   S +  +      L  ++     ++ +   +       +L+ ++LS+
Sbjct: 16  PGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSH 72

Query: 392 NRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKI 451
           N++  S  S + +L  L +L ++ N    +           L  L+L +N L   ++   
Sbjct: 73  NQI--SDLSPLKDLTKLEELSVNRNRLKNLN----GIPSACLSRLFLDNNELRDTDSL-- 124

Query: 452 DSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGK-DSLSYV 510
                    LS+    + +    L    +L  LDL  N+I     +    + +   ++++
Sbjct: 125 -IHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEI-----TNTGGLTRLKKVNWI 177

Query: 511 NLSHNFITKMKQIPWKNLGYLDLRSNL 537
           +L+              L   +   + 
Sbjct: 178 DLTGQKCVNEPVKYQPELYITNTVKDP 204

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 36/183 (19%), Positives = 65/183 (35%), Gaps = 16/183 (8%)

Query: 428 AKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLS 487
             L       L   S++                 +    NI +    ++    L  L LS
Sbjct: 16  PGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLS 71

Query: 488 ENKIDGQIPSWISEIGK-DSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPP 546
            N+I     S +S +     L  ++++ N +  +  IP   L  L L +N L+    +  
Sbjct: 72  HNQI-----SDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIH 126

Query: 547 -SSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRN 605
             +L +L I NN+     I  +  +  L+VLDL  N +              ++ +DL  
Sbjct: 127 LKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEIT-NTGGLTRL--KKVNWIDLTG 181

Query: 606 NRL 608
            + 
Sbjct: 182 QKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 38/226 (16%), Positives = 72/226 (31%), Gaps = 42/226 (18%)

Query: 622 LRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFH 681
               NL    +   + Q     + V+  +  N  I       +     L+ L L  N+  
Sbjct: 21  AVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQ-- 74

Query: 682 GSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQD 741
             + +  P +   KL  L ++ N          L  + +          L  L  +  + 
Sbjct: 75  --ISDLSPLKDLTKLEELSVNRNRLKN------LNGIPSA--------CLSRLFLDNNEL 118

Query: 742 SVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQV--IGKLHSLRLLNLSHNHFTGQI 799
               +L          L     +   +N    ++  +  +G L  L +L+L  N  T   
Sbjct: 119 RDTDSLIH--------LKNLEILSIRNN----KLKSIVMLGFLSKLEVLDLHGNEITN-- 164

Query: 800 PSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDG 845
              L  L K+  +DL+       + +P+     L + N   +  DG
Sbjct: 165 TGGLTRLKKVNWIDLTGQKC---VNEPVKYQPELYITNTVKD-PDG 206

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 43/247 (17%), Positives = 75/247 (30%), Gaps = 52/247 (21%)

Query: 101 TSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTV 160
                L +    NL       +++         + +F+  +SNI                
Sbjct: 13  FPDPGLANAVKQNLGKQSV--TDL-VSQKELSGVQNFNGDNSNIQ--------------- 54

Query: 161 VLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPI 220
            L  ++   ++L  L LS           I  L       L     L             
Sbjct: 55  SLAGMQFF-TNLKELHLSHN--------QISDLSP-----LKDLTKL------------- 87

Query: 221 EYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGH 280
           E L V+      L + I +  L  RL L  ++        L +L  L +L + +N     
Sbjct: 88  EELSVNRNRLKNL-NGIPSACLS-RLFLDNNELRDTDS--LIHLKNLEILSIRNNKLK-S 142

Query: 281 IPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVL 340
           I   L  L +L  LDL  N        +  L +V++ DL+  +       +   L     
Sbjct: 143 I-VMLGFLSKLEVLDLHGNE-ITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNT 200

Query: 341 IRLNNNS 347
           ++  +  
Sbjct: 201 VKDPDGR 207

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 8e-10
 Identities = 88/534 (16%), Positives = 163/534 (30%), Gaps = 161/534 (30%)

Query: 69  CSWDGVTCDMATGNVISLDLSCSWLH-GNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSG 127
           C    V C M    +        WL+  N  +  ++  L  LQ L          +I   
Sbjct: 171 CLSYKVQCKMD-FKIF-------WLNLKNCNSPETV--LEMLQKL--------LYQIDPN 212

Query: 128 FSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFP 187
           ++        S SD + N  I   I  ++     L   K   + L  L L +  +Q    
Sbjct: 213 WT--------SRSDHSSN--IKLRIHSIQAELRRLLKSKPYENCL--LVLLN--VQNAKA 258

Query: 188 INIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLM 247
            N F+L + +++  ++   +     A   T     LD    + +   +      LL +  
Sbjct: 259 WNAFNL-SCKILLTTRFKQVTDFLSAATTTHIS--LDHHSMTLTP-DEV---KSLLLKY- 310

Query: 248 LGYSQFVGPVPASLGNLTQLTLL------HLMHNNFSGHIPSS-LSNLVQLTYLDLSSNS 300
           L       P      N  +L+++       L   +   H+    L+ +++ +   L    
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA- 369

Query: 301 FFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLP 360
              E   +F+  ++S F  S +     IP+        +L  +           W   + 
Sbjct: 370 ---EYRKMFD--RLSVFPPSAH-----IPTI-------LLSLI-----------WFDVIK 401

Query: 361 LLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSG 420
                  SD  +   +++    SL       + +  SIP           + L+      
Sbjct: 402 -------SDVMVV--VNKLHKYSLVEKQPKESTI--SIP----------SIYLEL----- 435

Query: 421 IAEPYMFAKLIKLKYLYLSHNSL----SLGNTFKIDSPFPK------FSYLS--LSACN- 467
                     +KL+  Y  H S+    ++  TF  D   P       +S++   L     
Sbjct: 436 ---------KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486

Query: 468 ---ISAFPRFLRTQDELSYLDLS--ENKIDGQIPSWISEIG-KDSLSYVNLSHNFITKMK 521
              ++ F           +LD    E KI     +W +     ++L  +     +I    
Sbjct: 487 PERMTLFRMV--------FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC--- 535

Query: 522 QIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDI--IAL 573
                N    +   N +   LP    +L             I     D+  IAL
Sbjct: 536 ----DNDPKYERLVNAILDFLPKIEENL-------------ICSKYTDLLRIAL 572

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 2e-09
 Identities = 93/580 (16%), Positives = 170/580 (29%), Gaps = 192/580 (33%)

Query: 375 HIDEFP-----SKSLQNIYLSNNRLQGSI---------PSSIFELVNLTDLQLDSNNF-- 418
            + + P      + + +I +S + + G++            + +      L+++   F  
Sbjct: 37  DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-FLM 95

Query: 419 SGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQ 478
           S I        ++   Y+    + L   N       F K+        N+S    +L+ +
Sbjct: 96  SPIKTEQRQPSMMTRMYIE-QRDRLYNDN-----QVFAKY--------NVSRLQPYLKLR 141

Query: 479 DELSYLDLSEN-KIDGQIPSWISEIGKDSL-SYVNLSHNFITKMK-QIPWKNLG------ 529
             L  L  ++N  IDG + S     GK  +   V LS+    KM  +I W NL       
Sbjct: 142 QALLELRPAKNVLIDGVLGS-----GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 530 ---------YLDLRSNLLQGP-----LPVPPSS----LRVLLISNNQFTGEIIHSICDII 571
                       +  N          + +   S    LR LL S         +  C ++
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-------YENCLLV 249

Query: 572 ALDVLDLSNNRLNGTIPECIGNFSPSLSVLDL-RN----NRLNGSIPGTFAESNWLRSLN 626
            L   ++ N        +    F+ S  +L   R     + L+ +     +  +   +L 
Sbjct: 250 -LL--NVQN-------AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL- 298

Query: 627 LNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGN----LPE--LQVLVLRSNKF 680
                            T  EV  +           +L      LP   L     R +  
Sbjct: 299 -----------------TPDEVKSL--------LLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 681 HGSVREFE------PKESFPKL-RILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRY 733
             S+R+           +  KL  I++ S+N                      +  + R 
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVL--------------------EPAEYR- 372

Query: 734 LGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHN 793
              + +   + V      I    +  ++  +  S      ++  V+ KLH   L+     
Sbjct: 373 ---KMFDR-LSVFPPSAHIPTILLSLIWFDVIKS------DVMVVVNKLHKYSLVEKQPK 422

Query: 794 HFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDG--PIPHGP 851
             T  IPS          L+L            L +  +L      H  +     IP   
Sbjct: 423 ESTISIPSIY--------LELK---------VKLENEYAL------HRSIVDHYNIPKTF 459

Query: 852 QFNTF---QEDSYIGN-LG--LCGFPLTKKCGNDEAPTTF 885
             +       D Y  + +G  L      K   + E  T F
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHL------KNIEHPERMTLF 493

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 17/122 (13%)

Query: 328 IPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQL----SGHIDEFPSKS 383
           IP+  + L       L  NS           L  L  + L  N+L    +G  ++    S
Sbjct: 26  IPAQTTYL------DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL--TS 77

Query: 384 LQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPY-MFAKLIKLKYLYLSHN 441
           L  + LS N+LQ S+P+ +F+ L  L +L L++N    +  P  +F KL +LK L L  N
Sbjct: 78  LTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSL--PDGVFDKLTQLKDLRLYQN 134

Query: 442 SL 443
            L
Sbjct: 135 QL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 15/132 (11%)

Query: 318 DLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLF-SLPLLEYVRLSDNQLSGHI 376
           DL  N L          L +L  + L  N    ++P+ +F  L  L Y+ LS NQL    
Sbjct: 34  DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ--- 89

Query: 377 DEFPSK------SLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAK 429
              P+        L+ + L+ N+LQ S+P  +F+ L  L DL+L  N    + +  +F +
Sbjct: 90  -SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDG-VFDR 146

Query: 430 LIKLKYLYLSHN 441
           L  L+Y++L  N
Sbjct: 147 LTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 45/142 (31%), Positives = 60/142 (42%), Gaps = 11/142 (7%)

Query: 257 VPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFN-LTQVS 315
           VP   G   Q T L L  N+           L  LT L L  N        +FN LT ++
Sbjct: 22  VPT--GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79

Query: 316 FFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLF-SLPLLEYVRLSDNQL-- 372
           + +LS NQL         +L  L  + LN N    ++P  +F  L  L+ +RL  NQL  
Sbjct: 80  YLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS 138

Query: 373 --SGHIDEFPSKSLQNIYLSNN 392
              G  D     SLQ I+L +N
Sbjct: 139 VPDGVFDRL--TSLQYIWLHDN 158

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 333 SRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS-KSLQNIYLSN 391
           S ++ LVL   N+ S  G +         LE++   +  L+  I   P    L+ + LS+
Sbjct: 17  SDVKELVL--DNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIANLPKLNKLKKLELSD 73

Query: 392 NRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHN 441
           NR+ G +     +  NLT L L  N    ++      KL  LK L L + 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 54.3 bits (131), Expect = 8e-09
 Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 12/135 (8%)

Query: 546 PSSLRVLLISNNQFT-GEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFS--PSLSVLD 602
           PS ++ L++ N++   G++     +   L+ L   N  L       I N      L  L+
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-----TSIANLPKLNKLKKLE 70

Query: 603 LRNNRLNGSIPGTFAESNWLRSLNLNNNELGG-AIPQSLVNCTKVEVLDI-GN--IKIND 658
           L +NR++G +     +   L  LNL+ N++   +  + L     ++ LD+       +ND
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

Query: 659 AFPYWLGNLPELQVL 673
                   LP+L  L
Sbjct: 131 YRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 4/117 (3%)

Query: 589 ECIGNFSPSLSVLDLRNNRLN-GSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVE 647
           E        +  L L N+R N G + G   E   L  L+  N  L      +L    K++
Sbjct: 10  ELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLK 67

Query: 648 VLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSIN 704
            L++ + +++          P L  L L  NK    +   EP +    L+ LDL   
Sbjct: 68  KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK-DLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 7/97 (7%)

Query: 748 KGTEIEMQKILTVFTTIDFSSNGFDGEISQV--IGKLHSLRLLNLSHNHFTGQIPSSLGN 805
           +G    +         +   + G    ++ +  + KL+ L+ L LS N  +G +      
Sbjct: 31  EGKLEGLTDEFEELEFLSTINVG----LTSIANLPKLNKLKKLELSDNRVSGGLEVLAEK 86

Query: 806 LAKLESLDLSSNNVAG-KIPKPLTSLTSLSVLNLSHN 841
              L  L+LS N +      +PL  L +L  L+L + 
Sbjct: 87  CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 19/112 (16%), Positives = 46/112 (41%), Gaps = 4/112 (3%)

Query: 260 SLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDL 319
           +  ++ +L L +    +  G +        +L +L   +      I ++  L ++   +L
Sbjct: 15  TPSDVKELVLDN--SRSNEGKLEGLTDEFEELEFLSTINVGL-TSIANLPKLNKLKKLEL 71

Query: 320 SNNQLAGPIPSHGSRLQNLVLIRLNNNSFSG-TIPSWLFSLPLLEYVRLSDN 370
           S+N+++G +     +  NL  + L+ N     +    L  L  L+ + L + 
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 772 DGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLT 831
           +G++  +  +   L  L+  +   T  I ++L  L KL+ L+LS N V+G +        
Sbjct: 31  EGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88

Query: 832 SLSVLNLSHNRLD 844
           +L+ LNLS N++ 
Sbjct: 89  NLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 27/134 (20%), Positives = 57/134 (42%), Gaps = 32/134 (23%)

Query: 407 NLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSAC 466
           ++ +L LD++  +      +  +  +L++L   +  L+                      
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT---------------------- 55

Query: 467 NISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQI--- 523
           +I+  P+  +    L  L+LS+N++ G     ++E    +L+++NLS N I  +  I   
Sbjct: 56  SIANLPKLNK----LKKLELSDNRVSG-GLEVLAE-KCPNLTHLNLSGNKIKDLSTIEPL 109

Query: 524 -PWKNLGYLDLRSN 536
              +NL  LDL + 
Sbjct: 110 KKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 8/112 (7%)

Query: 476 RTQDELSYLDLSENKID-GQIPSWISEIGKDSLSYVNLSHNFITKMKQIPW-KNLGYLDL 533
           RT  ++  L L  ++ + G++     E   + L +++  +  +T +  +P    L  L+L
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEF--EELEFLSTINVGLTSIANLPKLNKLKKLEL 71

Query: 534 RSNLLQGPLPVPPS---SLRVLLISNNQFTG-EIIHSICDIIALDVLDLSNN 581
             N + G L V      +L  L +S N+      I  +  +  L  LDL N 
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 6/132 (4%)

Query: 245 RLMLGYSQFVG-PVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFG 303
            L L  ++F           L QL  ++  +N  +     +      +  + L+SN    
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 304 EIPDIF-NLTQVSFFDLSNNQLAGPIPSHG-SRLQNLVLIRLNNNSFSGTIPSWLF-SLP 360
               +F  L  +    L +N++   + +     L ++ L+ L +N  + T+    F +L 
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLH 153

Query: 361 LLEYVRLSDNQL 372
            L  + L  N  
Sbjct: 154 SLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 35/182 (19%), Positives = 69/182 (37%), Gaps = 47/182 (25%)

Query: 390 SNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTF 449
           SN +L   IP  I       +L+L++N F+ +    +F KL +L+ +  S+N ++     
Sbjct: 19  SNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT----- 70

Query: 450 KIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSY 509
                        +      AF         ++ + L+ N+++  +   + + G +SL  
Sbjct: 71  ------------DIEE---GAFEG----ASGVNEILLTSNRLEN-VQHKMFK-GLESLKT 109

Query: 510 VNLSHNFITKMKQIP------WKNLGYLDLRSNLLQGPLPVPP------SSLRVLLISNN 557
           + L  N   ++  +         ++  L L  N +     V P       SL  L +  N
Sbjct: 110 LMLRSN---RITCVGNDSFIGLSSVRLLSLYDNQIT---TVAPGAFDTLHSLSTLNLLAN 163

Query: 558 QF 559
            F
Sbjct: 164 PF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 30/140 (21%), Positives = 54/140 (38%), Gaps = 16/140 (11%)

Query: 574 DVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELG 633
             L L+NN         I    P L  ++  NN++     G F  ++ +  + L +N L 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 634 GAIPQSLVNCTKVEVLDIGNIKI----NDAFPYWLGNLPELQVLVLRSNKFHGSVREFEP 689
               +       ++ L + + +I    ND+F      L  +++L L  N+   +V     
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCVGNDSF----IGLSSVRLLSLYDNQIT-TV----A 145

Query: 690 KESF---PKLRILDLSINNF 706
             +F     L  L+L  N F
Sbjct: 146 PGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 17/101 (16%)

Query: 758 LTVFTTIDFSSNG--------FDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKL 809
           L     I+FS+N         F+G           +  + L+ N            L  L
Sbjct: 56  LPQLRKINFSNNKITDIEEGAFEG--------ASGVNEILLTSNRLENVQHKMFKGLESL 107

Query: 810 ESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHG 850
           ++L L SN +          L+S+ +L+L  N++   +  G
Sbjct: 108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI-TTVAPG 147

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 762 TTIDFSSNGFDG-EISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVA 820
             +  ++N F   E + +  KL  LR +N S+N  T     +    + +  + L+SN + 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 821 GKIPKPLTSLTSLSVLNLSHNRLDGPIPHG 850
               K    L SL  L L  NR+   + + 
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITC-VGND 123

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 41/139 (29%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 257 VPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFN-LTQVS 315
           VPA  G  T   +L+L  N  +   P    +L+ L  L L SN        +F+ LTQ++
Sbjct: 34  VPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT 91

Query: 316 FFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGH 375
             DL  NQL     +   RL +L  + +  N  +  +P  +  L  L ++ L  NQL   
Sbjct: 92  VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSI 150

Query: 376 IDE-FPS-KSLQNIYLSNN 392
               F    SL + YL  N
Sbjct: 151 PHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 363 EYVRLSDNQLSGHIDE-FPS-KSLQNIYLSNNRLQGSIPSSIF-ELVNLTDLQLDSNNFS 419
           + + L DNQ++      F S  +L+ +YL +N+L  ++P  +F  L  LT L L +N  +
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 420 GIAEPYMFAKLIKLKYLYLSHNSL 443
            +    +F +L+ LK L++  N L
Sbjct: 102 VL-PSAVFDRLVHLKELFMCCNKL 124

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 19/150 (12%)

Query: 562 EIIHSICDIIALDVLDLSNNRLNGTIPECIGNFS--PSLSVLDLRNNRLNGSIPGTFAES 619
           ++  ++  + A   L LS N +     E I + S   +L +L L  N +   I    A +
Sbjct: 39  KMDATLSTLKACKHLALSTNNI-----EKISSLSGMENLRILSLGRNLIK-KIENLDAVA 92

Query: 620 NWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFP-YWLGNLPELQVLVLRSN 678
           + L  L ++ N++  A    +     + VL + N KI +      L  L +L+ L+L  N
Sbjct: 93  DTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

Query: 679 KFHGSVREFEPKES--------FPKLRILD 700
             +   +E               P L+ LD
Sbjct: 151 PLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 33/136 (24%), Positives = 48/136 (35%), Gaps = 19/136 (13%)

Query: 408 LTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKID--SPFPKFSYLSLSA 465
             +L         +      + L   K+L LS N++      KI   S       LSL  
Sbjct: 27  KVELHGMIPPIEKMDAT--LSTLKACKHLALSTNNIE-----KISSLSGMENLRILSLGR 79

Query: 466 CNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGK-DSLSYVNLSHNFITKMKQI- 523
             I          D L  L +S N+I     + +S I K  +L  + +S+N IT   +I 
Sbjct: 80  NLIKKIENLDAVADTLEELWISYNQI-----ASLSGIEKLVNLRVLYMSNNKITNWGEID 134

Query: 524 ---PWKNLGYLDLRSN 536
                  L  L L  N
Sbjct: 135 KLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 38/186 (20%), Positives = 66/186 (35%), Gaps = 53/186 (28%)

Query: 270 LHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIP 329
           LH M       + ++LS L    +L LS+N     I  I +L                  
Sbjct: 30  LHGMIPPIE-KMDATLSTLKACKHLALSTN----NIEKISSL------------------ 66

Query: 330 SHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS-KSLQNIY 388
              S ++NL ++ L  N     I +       LE + +S NQ++  +       +L+ +Y
Sbjct: 67  ---SGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLSGIEKLVNLRVLY 121

Query: 389 LSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNT 448
           +SNN++     ++  E+  L  L                    KL+ L L+ N L     
Sbjct: 122 MSNNKI-----TNWGEIDKLAALD-------------------KLEDLLLAGNPLYNDYK 157

Query: 449 FKIDSP 454
               + 
Sbjct: 158 ENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 779 IGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNL 838
           +  + +LR+L+L  N    +I +       LE L +S N +A  +   +  L +L VL +
Sbjct: 66  LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYM 122

Query: 839 SHNRLD 844
           S+N++ 
Sbjct: 123 SNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 4/93 (4%)

Query: 750 TEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKL 809
            +I     +     +    N    +I  +     +L  L +S+N     + S +  L  L
Sbjct: 61  EKISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNL 117

Query: 810 ESLDLSSNNVAG-KIPKPLTSLTSLSVLNLSHN 841
             L +S+N +        L +L  L  L L+ N
Sbjct: 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 22/131 (16%)

Query: 511 NLSHNFITKMKQIPW--KNLGYLDLRSNLLQ-----GPLPVPPSSLRVLLISNNQFTGEI 563
           +     I KM       K   +L L +N ++       +     +LR+L +  N    +I
Sbjct: 31  HGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGME----NLRILSLGRNLIK-KI 85

Query: 564 IHSICDIIALDVLDLSNNRLNGTIPECIGNFS--PSLSVLDLRNNRLN--GSIPGTFAES 619
            +       L+ L +S N++       +       +L VL + NN++   G I    A  
Sbjct: 86  ENLDAVADTLEELWISYNQI-----ASLSGIEKLVNLRVLYMSNNKITNWGEI-DKLAAL 139

Query: 620 NWLRSLNLNNN 630
           + L  L L  N
Sbjct: 140 DKLEDLLLAGN 150

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 10/105 (9%)

Query: 342 RLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLS----GHIDEFPSKSLQNIYLSNNRLQGS 397
            L+ N F+  +P  L +   L  + LS+N++S              L  + LS NRL+  
Sbjct: 37  YLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNM--TQLLTLILSYNRLR-C 92

Query: 398 IPSSIFE-LVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHN 441
           IP   F+ L +L  L L  N+ S + E   F  L  L +L +  N
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDISVVPEG-AFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 366 RLSDNQLSGHIDEFPS-KSLQNIYLSNNRLQGSIPSSIF-ELVNLTDLQLDSNNFSGIAE 423
            L  NQ +    E  + K L  I LSNNR+  ++ +  F  +  L  L L  N    I  
Sbjct: 37  YLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCI-P 94

Query: 424 PYMFAKLIKLKYLYLSHNSLS 444
           P  F  L  L+ L L  N +S
Sbjct: 95  PRTFDGLKSLRLLSLHGNDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 8/106 (7%)

Query: 245 RLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGE 304
            L L  +QF   VP  L N   LTL+ L +N  S     S SN+ QL  L LS N     
Sbjct: 35  ELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRC 92

Query: 305 IPD-IFN-LTQVSFFDLSNNQLAGPIPSHGS--RLQNLVLIRLNNN 346
           IP   F+ L  +    L  N ++  +P  G+   L  L  + +  N
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDISV-VP-EGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 34/131 (25%)

Query: 292 TYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGT 351
           T L L  N F     ++ N   ++  DLSNN+++                         T
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-------------------------T 68

Query: 352 IPSWLF-SLPLLEYVRLSDNQLS----GHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE-L 405
           + +  F ++  L  + LS N+L        D    KSL+ + L  N +   +P   F  L
Sbjct: 69  LSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGL--KSLRLLSLHGNDIS-VVPEGAFNDL 125

Query: 406 VNLTDLQLDSN 416
             L+ L + +N
Sbjct: 126 SALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 34/131 (25%)

Query: 268 TLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQLAG 326
           T L+L  N F+  +P  LSN   LT +DLS+N         F N+TQ+    LS N+L  
Sbjct: 34  TELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR- 91

Query: 327 PIPSHGSRLQNLVLIRLNNNSFSGTIPSWLF-SLPLLEYVRLSDNQLS----GHIDEFPS 381
                                    IP   F  L  L  + L  N +S    G  ++   
Sbjct: 92  ------------------------CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDL-- 125

Query: 382 KSLQNIYLSNN 392
            +L ++ +  N
Sbjct: 126 SALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 385 QNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS 444
             +YL  N+    +P  +    +LT + L +N  S +     F+ + +L  L LS+N L 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRLR 91

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 10/85 (11%)

Query: 366 RLSDNQLS-----GHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFS 419
            L+DN+L      G     P   L  + L  N+L   I  + FE   ++ +LQL  N   
Sbjct: 35  LLNDNELGRISSDGLFGRLPH--LVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK 91

Query: 420 GIAEPYMFAKLIKLKYLYLSHNSLS 444
            I    MF  L +LK L L  N +S
Sbjct: 92  EI-SNKMFLGLHQLKTLNLYDNQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 8/109 (7%)

Query: 245 RLMLGYSQFVG-PVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFG 303
            L+L  ++          G L  L  L L  N  +G  P++      +  L L  N    
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IK 91

Query: 304 EIPD-IFN-LTQVSFFDLSNNQLAGPIPSHGS--RLQNLVLIRLNNNSF 348
           EI + +F  L Q+   +L +NQ++  +   GS   L +L  + L +N F
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISC-VM-PGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 10/108 (9%)

Query: 292 TYLDLSSNSFFGEIPD-IFN-LTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFS 349
           T L L+ N       D +F  L  +   +L  NQL G  P+      ++  ++L  N   
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 350 GTIPSWLF-SLPLLEYVRLSDNQLS----GHIDEFPSKSLQNIYLSNN 392
             I + +F  L  L+ + L DNQ+S    G  +     SL ++ L++N
Sbjct: 92  -EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL--NSLTSLNLASN 136

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 58.0 bits (140), Expect = 1e-08
 Identities = 70/450 (15%), Positives = 145/450 (32%), Gaps = 46/450 (10%)

Query: 407 NLTDLQLDSNNFSGIAEPYM---FAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSL 463
           +  D  L  + + G   P++    +    L+ + L    ++      I   F  F  L L
Sbjct: 78  HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL 137

Query: 464 SAC-NIS--AFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKD--SLSYVNLS--HNF 516
           S+C   S         T   L  LDL E+ +D     W+S       SL  +N+S   + 
Sbjct: 138 SSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASE 197

Query: 517 ITK--MKQIP--WKNLGYLDLRSNLLQ---GPLPVPPSSLRVLLIS--NNQFTGEIIHSI 567
           ++   ++++     NL  L L   +       L      L  L       +   ++   +
Sbjct: 198 VSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257

Query: 568 CDIIA----LDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNG-SIPGTFAESNWL 622
              ++    L  L    + +   +P  + +    L+ L+L    +    +     +   L
Sbjct: 258 SVALSGCKELRCLSGFWDAVPAYLPA-VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKL 316

Query: 623 RSLNLNNNELGGAIPQSLVNCTKVEVLDI---------GNIKINDAFPYWLG-NLPELQV 672
           + L + +      +      C  +  L +          N+ + +     +    P+L+ 
Sbjct: 317 QRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376

Query: 673 LVLRSNKFHG-SVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKL 731
           ++    +    ++       + P +    L I                    +      L
Sbjct: 377 VLYFCRQMTNAALITI--ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDL 434

Query: 732 RYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGF-DGEISQVIGKLHSLRLLNL 790
           R L         ++T K  E  +         +  +  G  D  +  V+    SLR L +
Sbjct: 435 RRLSLSG-----LLTDKVFE-YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEI 488

Query: 791 SHNHFTGQ-IPSSLGNLAKLESLDLSSNNV 819
               F  + + ++   L  + SL +SS +V
Sbjct: 489 RDCPFGDKALLANASKLETMRSLWMSSCSV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 56.1 bits (135), Expect = 3e-08
 Identities = 60/437 (13%), Positives = 130/437 (29%), Gaps = 72/437 (16%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLL----HLQTLNLSH-NDFDYSEISSGFSRFRNLTH 136
            +  + L    +     T+  L  +     + + L LS    F    +++  +  RNL  
Sbjct: 106 WLEEIRLKRMVV-----TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKE 160

Query: 137 FSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSS------------------SLTSLSLS 178
             L +S+++    + +S    +   L SL N+S                   +L SL L+
Sbjct: 161 LDLRESDVDDVSGHWLSHFPDTYTSLVSL-NISCLASEVSFSALERLVTRCPNLKSLKLN 219

Query: 179 DCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYL----------DVSET 228
             +        +   P  + +      +       +  +  +             D    
Sbjct: 220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA 279

Query: 229 SFSELPDSIGNLKLLGRLMLGYSQFVGP-VPASLGNLTQLTLLHLMHNNFSGHIPSSLSN 287
               +      L  L    L Y+      +   L    +L  L ++       +    S 
Sbjct: 280 YLPAVYSVCSRLTTLN---LSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST 336

Query: 288 LVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVL--IRLNN 345
              L  L +  +  F   P++  LT+     +S             +L++++    ++ N
Sbjct: 337 CKDLRELRVFPSEPFVMEPNV-ALTEQGLVSVSMGC---------PKLESVLYFCRQMTN 386

Query: 346 NSFSGTIPSWLFSLPLLEYVRLS--DNQLSGHIDEFPS-----------KSLQNIYLSNN 392
            +   TI     + P +   RL   + +   ++   P            K L+ + LS  
Sbjct: 387 AALI-TIAR---NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL 442

Query: 393 RLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKID 452
                          +  L +     S +   ++ +    L+ L +              
Sbjct: 443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANA 502

Query: 453 SPFPKFSYLSLSACNIS 469
           S       L +S+C++S
Sbjct: 503 SKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.0 bits (109), Expect = 5e-05
 Identities = 69/598 (11%), Positives = 156/598 (26%), Gaps = 113/598 (18%)

Query: 102 SLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSD-SNINCKIPYEISFLKMSTV 160
           S + +       +   +      ++   RF  +    L    +          +      
Sbjct: 36  SWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYP 95

Query: 161 VLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPI 220
            ++++ +  + L  + L                                           
Sbjct: 96  WIEAMSSSYTWLEEIRLKRM---------------------------------------- 115

Query: 221 EYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGP--VPASLGNLTQLTLLHLMHNNFS 278
               V++     +  S  N K    L+L   +      + A       L  L L  ++  
Sbjct: 116 ---VVTDDCLELIAKSFKNFK---VLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD 169

Query: 279 GHIPSSLSNLV----QLTYLDLSSNSFFGEIPDIF---------NLTQVSFFDLSNNQLA 325
                 LS+       L  L++S      E+             NL  +        +  
Sbjct: 170 DVSGHWLSHFPDTYTSLVSLNIS--CLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKL 227

Query: 326 GPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQ 385
             +     +L+ L                   +L                      K L+
Sbjct: 228 ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC-------------------KELR 268

Query: 386 NIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSL 445
            +    + +   +P+       LT L L            +  +  KL+ L++    +  
Sbjct: 269 CLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED 327

Query: 446 GNTFKIDSPFPKFSYLSLSACNISAFPRFLR-TQDELSYLDLSENKIDGQIPSWISEIGK 504
                + S       L +           +  T+  L  + +   K++  +  +  ++  
Sbjct: 328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE-SVLYFCRQMTN 386

Query: 505 DSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEII 564
            +L    ++ N           N+    L     + P  +             +      
Sbjct: 387 AALIT--IARNR---------PNMTRFRLCIIEPKAPDYL-----------TLEPLDIGF 424

Query: 565 HSICDI-IALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAES-NWL 622
            +I +    L  L LS   L   + E IG ++  + +L +     +           + L
Sbjct: 425 GAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSL 483

Query: 623 RSLNLNNNELGG-AIPQSLVNCTKVEVLDIGNIKINDAFPYWLG-NLPELQVLVLRSN 678
           R L + +   G  A+  +      +  L + +  ++      LG  +P+L V V+   
Sbjct: 484 RKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 43/284 (15%), Positives = 80/284 (28%), Gaps = 44/284 (15%)

Query: 570 IIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAES-NWLRSLNLN 628
               +++            E + +    L  + L+   +        A+S    + L L+
Sbjct: 79  FADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLS 138

Query: 629 NNEL--GGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLG----NLPELQVLVLRSNKFHG 682
           + E      +      C  ++ LD+    ++D   +WL         L  L +       
Sbjct: 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEV 198

Query: 683 SVREFEP-KESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQD 741
           S    E      P L+ L L+               L  +  +     +L  LG   Y  
Sbjct: 199 SFSALERLVTRCPNLKSLKLN-----------RAVPLEKLATLLQRAPQLEELGTGGYTA 247

Query: 742 SVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPS 801
            V                               +S  +     LR L+   +     +P+
Sbjct: 248 EV------------------------RPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA 283

Query: 802 SLGNLAKLESLDLSSNNVAGK-IPKPLTSLTSLSVLNLSHNRLD 844
                ++L +L+LS   V    + K L     L  L +     D
Sbjct: 284 VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIED 327

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 40/295 (13%), Positives = 87/295 (29%), Gaps = 59/295 (20%)

Query: 382 KSLQNIYLSNNRLQGSIPSSIFELV-----NLTDLQLDSNNFSGIAEPYMFAKLIKLKYL 436
            SL+ + L+  R+     + +  ++      L ++ L S          +    ++ + L
Sbjct: 72  SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKL 131

Query: 437 YLSHNSLS------LGNTFKIDSPFPKFSYLSLSACNIS-----AFPRFLRTQDELSYLD 485
            L  NSL       L +         + + L LS   ++          L     +++L 
Sbjct: 132 GLQLNSLGPEACKDLRDLLL--HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLS 189

Query: 486 LSENKIDGQIPSWISEIGKD--SLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLP 543
           L    +  +    ++        L  +N+++N           +   L L     +    
Sbjct: 190 LLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG--------DTAALALARAARE---- 237

Query: 544 VPPSSLRVLLISNNQFTGEIIHSICDIIA-------LDVLDLSNNRL------------- 583
               SL +L +  N+ + E    + D+         + V       +             
Sbjct: 238 --HPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQR 295

Query: 584 -NGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAES----NWLRSLNLNNNELG 633
              +           L + DL ++R     P   A+       +R+L       G
Sbjct: 296 NLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 55.1 bits (133), Expect = 5e-08
 Identities = 42/268 (15%), Positives = 81/268 (30%), Gaps = 48/268 (17%)

Query: 475 LRTQDELSYLDLSENKIDGQIPSWISEIGKDS---LSYVNLSHNFITK------MKQIPW 525
                 L  L+L+  ++     + ++ +       L  VNL+   +        +     
Sbjct: 68  AEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF-- 125

Query: 526 KNLGYLDLRSNLLQGP--------LPVPPSSLRVLLISNNQFTGEIIHSICDIIA----L 573
                L L+ N L           L      +  L +SNN  T   +  + + +A    +
Sbjct: 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSV 185

Query: 574 DVLDLSNNRLNGTIPECIGN---FSPSLSVLDLRNNRLNGSIPGTFAES----NWLRSLN 626
             L L +  L     E +      +  L  L++  N    +     A +      L  L+
Sbjct: 186 THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLH 245

Query: 627 LNNNELG--GA-----IPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNK 679
           L  NEL   G      +  +     +V V       +++ +   L         V R+  
Sbjct: 246 LYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSE-------VQRNLN 298

Query: 680 FHGSVREFEPKESFPKLRILDLSINNFS 707
                R         +L + DL  +  +
Sbjct: 299 SWDRARVQRH----LELLLRDLEDSRGA 322

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 51/355 (14%), Positives = 100/355 (28%), Gaps = 95/355 (26%)

Query: 506 SLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIH 565
           SL  +NL+   +T +K      +  +          L     +L  + +++ Q     + 
Sbjct: 73  SLRQLNLAGVRMTPVK---CTVVAAV----------LGSGRHALDEVNLASCQLDPAGLR 119

Query: 566 SICDII-ALDVLDLSNNRLNGT----IPECIGNFSPSLSVLDLRNNRLNGSIPGTFAE-- 618
           ++  +      L L  N L       + + + +    ++ L L NN L  +      E  
Sbjct: 120 TLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179

Query: 619 -SNW-LRSLNLNNNELG----GAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQV 672
             N  +  L+L +  LG      +   L    +++ L++      D     L        
Sbjct: 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR------ 233

Query: 673 LVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLR 732
              R +               P L +L L  N  S                    EG  +
Sbjct: 234 -AAREH---------------PSLELLHLYFNELS-------------------SEG-RQ 257

Query: 733 YLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSH 792
            L +          L G      +++   T     S  +   +S+V   L+S     +  
Sbjct: 258 VLRD----------LGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQR 307

Query: 793 NHFTGQIPSSLGNLAKLESLDLSSNNV----AGKIPKPLTSLTSLSVLNLSHNRL 843
           +              +L   DL  +        +  + L     +  L       
Sbjct: 308 H-------------LELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 47/311 (15%), Positives = 93/311 (29%), Gaps = 83/311 (26%)

Query: 552 LLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGS 611
           L   N     ++   I ++ AL+       +L     + +    PS   LD         
Sbjct: 7   LSAHNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVL---PPSEL-LDHLFFHYEFQ 62

Query: 612 IPGTFAESNW-LRSLNLNNNELGGAIPQSL-----VNCTKVEVLDIGNIKINDAFPYWLG 665
                AE    LR LNL    +       +          ++ +++ + +++ A      
Sbjct: 63  NQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPA------ 116

Query: 666 NLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVS 725
               L+ L+                  F + R L L +N+                    
Sbjct: 117 ---GLRTLL----------------PVFLRARKLGLQLNSLG------------------ 139

Query: 726 ADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGE----ISQVIGK 781
             E   + L +          L   +          TT+  S+N         + + +  
Sbjct: 140 -PEA-CKDLRD---------LLLHDQ-------CQITTLRLSNNPLTAAGVAVLMEGLAG 181

Query: 782 LHSLRLLNLSHNHFTGQ----IPSSLGNLAKLESLDLSSNNV----AGKIPKPLTSLTSL 833
             S+  L+L H     +    + + L    +L+ L+++ N      A  + +      SL
Sbjct: 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSL 241

Query: 834 SVLNLSHNRLD 844
            +L+L  N L 
Sbjct: 242 ELLHLYFNELS 252

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.7 bits (136), Expect = 1e-08
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 10/107 (9%)

Query: 365 VRLSDNQLSGHIDEFPS-KSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLDSNNFSGIA 422
           +R + +     +   P  ++L  +Y+ N +    +       L  L +L +  +    + 
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV- 71

Query: 423 EPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNIS 469
            P  F    +L  L LS N+L           +     LSL    +S
Sbjct: 72  APDAFHFTPRLSRLNLSFNALES-------LSWKTVQGLSLQELVLS 111

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.7 bits (136), Expect = 2e-08
 Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 8/141 (5%)

Query: 391 NNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSL--GNT 448
                      +    NLT+L +++       E      L +L+ L +  + L     + 
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 449 FKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKI--DGQIPSWISEIGKDS 506
           F      P+ S L+LS   + +          L  L LS N +     +  W+    ++ 
Sbjct: 76  F---HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL-RWLQRWEEEG 131

Query: 507 LSYVNLSHNFITKMKQIPWKN 527
           L  V            +    
Sbjct: 132 LGGVPEQKLQCHGQGPLAHMP 152

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.3 bits (135), Expect = 2e-08
 Identities = 20/118 (16%), Positives = 33/118 (27%), Gaps = 27/118 (22%)

Query: 281 IPSSLSNLVQLTYLDLSSNSFFGEIPD--IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNL 338
               L     LT L + +      +    +  L ++    +  + L              
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR------------- 69

Query: 339 VLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSG-HIDEFPSKSLQNIYLSNNRLQ 395
               +  ++F           P L  + LS N L           SLQ + LS N L 
Sbjct: 70  ---FVAPDAFHF--------TPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.9 bits (134), Expect = 3e-08
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 6/102 (5%)

Query: 321 NNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFS-LPLLEYVRLSDNQLSGHIDE- 378
               A     H    +NL  + + N      +       L  L  + +  + L   +   
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

Query: 379 -FPS-KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNF 418
            F     L  + LS N L+ S+     + ++L +L L  N  
Sbjct: 75  AFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 4/102 (3%)

Query: 533 LRSNLLQGPLPVPP-SSLRVLLISNNQFTGEI-IHSICDIIALDVLDLSNNRLNGTIPEC 590
            R   L     +P   +L  L I N Q    + +  +  +  L  L +  + L   +   
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

Query: 591 IGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNEL 632
             +F+P LS L+L  N L      T    + L+ L L+ N L
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 1/103 (0%)

Query: 223 LDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPA-SLGNLTQLTLLHLMHNNFSGHI 281
           L  +     +    +   + L  L +   Q +  +    L  L +L  L ++ +      
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72

Query: 282 PSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQL 324
           P +     +L+ L+LS N+             +    LS N L
Sbjct: 73  PDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 9e-06
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 782 LHSLRLLNLSHNHFTGQIPS-SLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSH 840
             +L  L + +      +    L  L +L +L +  + +    P        LS LNLS 
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 841 NRL 843
           N L
Sbjct: 90  NAL 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 3e-05
 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 2/88 (2%)

Query: 758 LTVFTTIDFSSNGFDGEI-SQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSS 816
               T +   +      +  + +  L  LR L +  +      P +     +L  L+LS 
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 817 NNVAGKIPKPLTSLTSLSVLNLSHNRLD 844
           N +   +        SL  L LS N L 
Sbjct: 90  NALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 4/113 (3%)

Query: 333 SRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS-KSLQNIYLSN 391
           + ++ LVL   N  S  G I         LE++ L +  L   +   P    L+ + LS 
Sbjct: 24  AAVRELVL--DNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSNLPKLPKLKKLELSE 80

Query: 392 NRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS 444
           NR+ G +     +L NLT L L  N    I+      KL  LK L L +  ++
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 35/150 (23%), Positives = 65/150 (43%), Gaps = 12/150 (8%)

Query: 531 LDLRSNLLQGPLPVPPSSLRVLLISNNQFT-GEIIHSICDIIALDVLDLSNNRLNGTIPE 589
           +D++  +        P+++R L++ N +   G+I     + + L+ L L N  L      
Sbjct: 8   MDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-----I 62

Query: 590 CIGNFS--PSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGG-AIPQSLVNCTKV 646
            + N    P L  L+L  NR+ G +     +   L  LNL+ N+L   +  + L     +
Sbjct: 63  SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECL 122

Query: 647 EVLDIGNIKINDAFPYW---LGNLPELQVL 673
           + LD+ N ++ +   Y       LP+L  L
Sbjct: 123 KSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 6/116 (5%)

Query: 260 SLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDL 319
           +   + +L L     +N  G I    +  V L +L L +      + ++  L ++   +L
Sbjct: 22  TPAAVRELVL-DNCKSN-DGKIEGLTAEFVNLEFLSLINVGL-ISVSNLPKLPKLKKLEL 78

Query: 320 SNNQLAGPIPSHGSRLQNLVLIRLNNNSFS--GTIPSWLFSLPLLEYVRLSDNQLS 373
           S N++ G +     +L NL  + L+ N      T+   L  L  L+ + L + +++
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 7/93 (7%)

Query: 752 IEMQKILTVFTTIDFSSNGFDGEISQVIG--KLHSLRLLNLSHNHFTGQIPSSLGNLAKL 809
             +         +   + G    +  V    KL  L+ L LS N   G +      L  L
Sbjct: 42  EGLTAEFVNLEFLSLINVG----LISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 810 ESLDLSSNNVAG-KIPKPLTSLTSLSVLNLSHN 841
             L+LS N +      +PL  L  L  L+L + 
Sbjct: 98  THLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 772 DGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLT 831
           DG+I  +  +  +L  L+L +      + S+L  L KL+ L+LS N + G +      L 
Sbjct: 38  DGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95

Query: 832 SLSVLNLSHNRLD 844
           +L+ LNLS N+L 
Sbjct: 96  NLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 7/109 (6%)

Query: 432 KLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKI 491
            ++ L L +   + G    + + F    +LSL    + +    L    +L  L+LSEN+I
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS-NLPKLPKLKKLELSENRI 83

Query: 492 DGQIPSWISEIGKDSLSYVNLSHNFITKMKQI----PWKNLGYLDLRSN 536
            G     ++E    +L+++NLS N +  +  +      + L  LDL + 
Sbjct: 84  FG-GLDMLAE-KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 5/111 (4%)

Query: 362 LEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGI 421
           L+  + +D ++ G   EF +  L+ + L N  L  S+ S++ +L  L  L+L  N   G 
Sbjct: 31  LDNCKSNDGKIEGLTAEFVN--LEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGG 86

Query: 422 AEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFP 472
               +  KL  L +L LS N L   +T +          L L  C ++   
Sbjct: 87  -LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 4/108 (3%)

Query: 597 SLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKI 656
               LDLR  ++   I    A  +   +++ ++NE+            +++ L + N +I
Sbjct: 20  RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRI 76

Query: 657 NDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSIN 704
                     LP+L  L+L +N     + + +P  S   L  L +  N
Sbjct: 77  CRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 6/113 (5%)

Query: 333 SRLQNLVLIR---LNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS-KSLQNIY 388
           ++  N V  R   L        I +   +L   + +  SDN++   +D FP  + L+ + 
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLL 70

Query: 389 LSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHN 441
           ++NNR+          L +LT+L L +N+   + +    A L  L YL +  N
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 11/117 (9%)

Query: 259 ASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFD 318
           A   N  +   L L        I +  + L Q   +D S N    ++     L ++    
Sbjct: 13  AQYTNAVRDRELDL-RGYKIPVIENLGATLDQFDAIDFSDNEI-RKLDGFPLLRRLKTLL 70

Query: 319 LSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSW-----LFSLPLLEYVRLSDN 370
           ++NN++          L +L  + L NNS    +        L SL  L Y+ +  N
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNS----LVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 26/135 (19%), Positives = 42/135 (31%), Gaps = 31/135 (22%)

Query: 546 PSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFS--PSLSVLDL 603
               R L +   +    I +    +   D +D S+N +       +  F     L  L +
Sbjct: 18  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI-----RKLDGFPLLRRLKTLLV 71

Query: 604 RNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYW 663
            NNR+     G       L  L L NN L                 ++G++         
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNSLV----------------ELGDLDP------- 108

Query: 664 LGNLPELQVLVLRSN 678
           L +L  L  L +  N
Sbjct: 109 LASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 782 LHSLRLLNLSHNHFTGQIPS--SLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLS 839
           L     ++ S N    +I        L +L++L +++N +         +L  L+ L L+
Sbjct: 41  LDQFDAIDFSDN----EIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96

Query: 840 HNRLD 844
           +N L 
Sbjct: 97  NNSLV 101

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 54.6 bits (131), Expect = 1e-07
 Identities = 67/484 (13%), Positives = 153/484 (31%), Gaps = 73/484 (15%)

Query: 407 NLTDLQLDSNNFSGIAEPYMFA---KLIKLKYLYLSHNSLS-LGNTFKIDSPFPKFSYLS 462
                 L   N+ G   P++      L +LK ++     +S L       +       L 
Sbjct: 85  RAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144

Query: 463 LSAC-NIS--AFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKD--SLSYVNLSHNFI 517
           L  C   +       +    ++  L + E+    +   W+ E+ +   SL  +N     +
Sbjct: 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFY---M 201

Query: 518 TKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLD 577
           T+  +I  K+L  +                SL  + + + +   E++        L+   
Sbjct: 202 TEFAKISPKDLETIARNC-----------RSLVSVKVGDFEIL-ELVGFFKAAANLEEFC 249

Query: 578 LSNNRLNGTIPECIGNFSPSLSVLDLRNNRL-NGSIPGTFAESNWLRSLNLNNNELGGAI 636
             +   +  +PE   N      +  L  + +    +P  F  +  +R L+L    L    
Sbjct: 250 GGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED 309

Query: 637 PQSLV-NCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPK----- 690
             +L+  C  +EVL+  N+  +           +L+ L +        + + E       
Sbjct: 310 HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG 369

Query: 691 -----ESFPKLRILDLSINNFSG--------------YLPERFLENLNAMRNVSADEG-- 729
                +   +L  + + +++ +                     L+    + ++  D G  
Sbjct: 370 LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429

Query: 730 -------KLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGF-DGEISQVIGK 781
                  KLR     +Y     +T  G    + +       +     G  D  + +    
Sbjct: 430 SLLIGCKKLRRF--AFYLRQGGLTDLGLS-YIGQYSPNVRWMLLGYVGESDEGLMEFSRG 486

Query: 782 LHSLRLLNLSHNHFTGQ-IPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSH 840
             +L+ L +    F+ + I +++  L  L  L +              S+T   ++ ++ 
Sbjct: 487 CPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA---------SMTGQDLMQMAR 537

Query: 841 NRLD 844
              +
Sbjct: 538 PYWN 541

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.9 bits (111), Expect = 3e-05
 Identities = 80/571 (14%), Positives = 161/571 (28%), Gaps = 87/571 (15%)

Query: 128 FSRFRNLTHFSLS-DSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCIL--QG 184
             RF NL    L              ++    T  +  + N    L S+     I+    
Sbjct: 69  SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLD 128

Query: 185 NFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLG 244
              +      + + ++L +                      +      +   + + + + 
Sbjct: 129 LDRLAKARADDLETLKLDKCSG------------------FTTDGLLSI---VTHCRKIK 167

Query: 245 RLMLGYSQFVGPVPASLG----NLTQLTLLHLMHNNFSGHIPSSLSNLVQ----LTYLDL 296
            L++  S F       L     + T L +L+     F+   P  L  + +    L  + +
Sbjct: 168 TLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV 227

Query: 297 SSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWL 356
                         L  V FF  + N            L+      LN +         L
Sbjct: 228 GDFE---------ILELVGFFKAAAN------------LEEFCGGSLNEDIGMPEKYMNL 266

Query: 357 FSLPLLEYVRLSDNQLSGHIDEFP-SKSLQNIYLSNNRLQG-SIPSSIFELVNLTDLQLD 414
                L  + LS    +     FP +  ++ + L    L+     + I +  NL  L+  
Sbjct: 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET- 325

Query: 415 SNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRF 474
            N         +     +LK L +   +         D    +     +S   + A  + 
Sbjct: 326 RNVIGDRGLEVLAQYCKQLKRLRIERGA---------DEQGMEDEEGLVSQRGLIALAQG 376

Query: 475 LRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLR 534
            +   EL Y+ +  + I       +  IG    +  +     + + ++I   +L   +  
Sbjct: 377 CQ---ELEYMAVYVSDIT---NESLESIGTYLKNLCDFRLVLLDREERI--TDLPLDNGV 428

Query: 535 SNLLQGPLPVPPSSLRVLLISNN--QFTGEIIHSICDI-IALDVLDLSNNRLNGTIPECI 591
            +LL G        LR           T   +  I      +  + L     +       
Sbjct: 429 RSLLIG-----CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF 483

Query: 592 GNFSPSLSVLDLRNNRL-NGSIPGTFAESNWLRSLNLNNNEL---GGAIPQSLVNCTKVE 647
               P+L  L++R       +I     +   LR L +        G  + Q       +E
Sbjct: 484 SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIE 543

Query: 648 VLDIGNI-KINDAFPYWLGNLPELQVLVLRS 677
           ++    + ++N          P   +L   S
Sbjct: 544 LIPSRRVPEVNQQGEIREMEHPA-HILAYYS 573

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.5 bits (110), Expect = 4e-05
 Identities = 64/410 (15%), Positives = 123/410 (30%), Gaps = 44/410 (10%)

Query: 82  NVISLDLS-CSWLHGNIPTNTSLFHLL----HLQTLNLSHNDFDYSEISSGFSRFRNLTH 136
           ++ +L L  CS       T   L  ++     ++TL +  + F   +        ++ T 
Sbjct: 139 DLETLKLDKCSGF-----TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT- 192

Query: 137 FSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIF--HLP 194
            SL   N          F K+S   L+++     SL S+ + D  +           +L 
Sbjct: 193 -SLEVLNFYM-----TEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLE 246

Query: 195 NPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFV 254
                 L+++  +  K+    +   +  L +S    +E+P        + +L L Y+   
Sbjct: 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE 306

Query: 255 GP-VPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSS-NSFFGEIPDIFNLT 312
                  +     L +L   +      +        QL  L +       G   +   ++
Sbjct: 307 TEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366

Query: 313 QVSFFDLSNNQLAGPIPSHGSRLQNLVLI--RLNNNSFSGTIPSWLFSLPLLEYVRLS-- 368
           Q     L+              L+ + +    + N S   +I ++L +L     V L   
Sbjct: 367 QRGLIALA---------QGCQELEYMAVYVSDITNESLE-SIGTYLKNLCDFRLVLLDRE 416

Query: 369 --------DNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFEL-VNLTDLQLDSNNFS 419
                   DN +   +           YL    L     S I +   N+  + L     S
Sbjct: 417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES 476

Query: 420 GIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNIS 469
                        L+ L +     S        +  P   YL +     S
Sbjct: 477 DEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 45.7 bits (108), Expect = 5e-05
 Identities = 60/576 (10%), Positives = 148/576 (25%), Gaps = 105/576 (18%)

Query: 151 EISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGK 210
            ++     T   D L     +L SL L        F +   +        ++    ++  
Sbjct: 54  HVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVT---EISNN 110

Query: 211 FPANNWTSPIEYLDVSETSFSE---LPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQL 267
                    ++ +       S+      +      L  L L                T  
Sbjct: 111 LRQ------LKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS----------GFTTD 154

Query: 268 TLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGP 327
            LL +            +++  ++  L +  +SF          ++     L        
Sbjct: 155 GLLSI------------VTHCRKIKTLLMEESSF----------SEKDGKWLHE------ 186

Query: 328 IPSHGSRLQNLVLIRLNNNSFS-GTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS----K 382
           +  H + L+ L          S   + +   +   L  V++ D ++   +  F +    +
Sbjct: 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLE 246

Query: 383 SLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNS 442
                 L+ +        ++     L  L L     + +  P +F    +++ L L +  
Sbjct: 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM--PILFPFAAQIRKLDLLYAL 304

Query: 443 LSLGNTFKIDSPFPKFSYLSLSAC-NISAFPRFLRTQDELSYLDLSENKIDGQIPSWISE 501
           L   +   +    P    L               +   +L  L +     +  +      
Sbjct: 305 LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364

Query: 502 IGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTG 561
           + +  L  + L+                                   L  + +  +  T 
Sbjct: 365 VSQRGL--IALAQGC------------------------------QELEYMAVYVSDITN 392

Query: 562 EIIHSIC----DIIALDVLDLSNNRLNGTIP-----ECIGNFSPSLSVLDLRNNRLNGSI 612
           E + SI     ++    ++ L        +P       +      L        +   + 
Sbjct: 393 ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452

Query: 613 PGTFAESNW---LRSLNLNNNELGGAIPQSLV-NCTKVEVLDIGNIKI-NDAFPYWLGNL 667
            G      +   +R + L                C  ++ L++        A    +  L
Sbjct: 453 LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL 512

Query: 668 PELQVLVLRSNKFH-GSVREFEPKESFPKLRILDLS 702
           P L+ L ++  +         +    +  + ++   
Sbjct: 513 PSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 53.8 bits (128), Expect = 1e-07
 Identities = 20/152 (13%), Positives = 50/152 (32%), Gaps = 17/152 (11%)

Query: 525 WKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSI--CDIIALDVLDL---S 579
              L  L ++          P  +L+ L I +      ++  I   D+  L+ L L    
Sbjct: 171 MPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGV 230

Query: 580 NNRLNGTIPECI-----GNFSPSLSVLDLRNNRLNGSIPGTFAESNW---LRSLNLNNNE 631
            +                +  P+L  L + +      +   F ES+    L +++++   
Sbjct: 231 EDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290

Query: 632 LGG----AIPQSLVNCTKVEVLDIGNIKINDA 659
           L       +   +     ++ +++    ++D 
Sbjct: 291 LTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.6 bits (117), Expect = 3e-06
 Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 780 GKLHSLRLLNLSHNHFTGQIPSSLGN---LAKLESLDLSSNNV----AGKIPKPLTSLTS 832
            +  +L+ L +        +         L +LE++D+S+  +    A  +   +  +  
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308

Query: 833 LSVLNLSHNRL 843
           L  +N+ +N L
Sbjct: 309 LKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.1 bits (108), Expect = 3e-05
 Identities = 21/147 (14%), Positives = 50/147 (34%), Gaps = 16/147 (10%)

Query: 595 SPSLSVLDLRNNRLNGSIPGTFAESNW--LRSLNL---NNNELGGAIPQSLV------NC 643
            P+L  L++ +  L  S+      S+   L  L L     +                   
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251

Query: 644 TKVEVLDIGNIKINDAFPYWLGN---LPELQVLVLRSNKFH--GSVREFEPKESFPKLRI 698
             ++ L I + +  +           LP+L+ + + +      G+    +  +    L+ 
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311

Query: 699 LDLSINNFSGYLPERFLENLNAMRNVS 725
           +++  N  S  + +   ++L    +VS
Sbjct: 312 INMKYNYLSDEMKKELQKSLPMKIDVS 338

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 363 EYVRLSDNQL----SGHIDEFPSKSLQNIYLSNNRLQGSIPSSIF-ELVNLTDLQLDSNN 417
             + L  N+L     G  D+     L  + LS N++Q S+P  +F +L  LT L L  N 
Sbjct: 31  TRLELESNKLQSLPHGVFDKL--TQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENK 87

Query: 418 FSGIAEPYMFAKLIKLKYLYLSHNSL 443
              +    +F KL +LK L L  N L
Sbjct: 88  LQSL-PNGVFDKLTQLKELALDTNQL 112

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 34/106 (32%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 245 RLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGE 304
           RL L  ++           LTQLT L L  N            L +LT L L  N     
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQS 90

Query: 305 IPD-IF-NLTQVSFFDLSNNQLAGPIPSHGS--RLQNLVLIRLNNN 346
           +P+ +F  LTQ+    L  NQL   +P  G   RL +L  I L+ N
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKS-VP-DGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 34/134 (25%), Positives = 48/134 (35%), Gaps = 33/134 (24%)

Query: 265 TQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFN-LTQVSFFDLSNNQ 323
           +  T L L  N            L QLT L LS N        +F+ LT+++   L  N+
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 324 LAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLF-SLPLLEYVRLSDNQL----SGHIDE 378
           L                          ++P+ +F  L  L+ + L  NQL     G  D 
Sbjct: 88  LQ-------------------------SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDR 122

Query: 379 FPSKSLQNIYLSNN 392
               SLQ I+L  N
Sbjct: 123 L--TSLQKIWLHTN 134

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 383 SLQNIYLSNNRLQGSIPSSIF-ELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHN 441
           + Q +YL +N++   +   +F  L  LT L LD+N  + +    +F KL +L  L L+ N
Sbjct: 31  TTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDN 88

Query: 442 SL 443
            L
Sbjct: 89  QL 90

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 257 VPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFN-LTQV 314
           VP   G  T   +L+L  N  +   P     L QLT LDL +N     +P  +F+ LTQ+
Sbjct: 24  VPT--GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQL 80

Query: 315 SFFDLSNNQLAGPIPSHGS--RLQNLVLIRLNNN 346
           +   L++NQL   IP  G+   L++L  I L NN
Sbjct: 81  TQLSLNDNQLKS-IP-RGAFDNLKSLTHIWLLNN 112

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 383 SLQNIYLSNNRLQGSIPSSIF-ELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHN 441
             Q ++L+NN++   +   +F  LVNL  L  +SN  + I    +F KL +L  L L+ N
Sbjct: 34  DKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDN 91

Query: 442 SL 443
            L
Sbjct: 92  HL 93

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 257 VPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IF-NLTQV 314
           VPA  G  T    L L +N  +   P    +LV L  L  +SN     IP  +F  LTQ+
Sbjct: 27  VPA--GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQL 83

Query: 315 SFFDLSNNQLAGPIPSHGS--RLQNLVLIRLNNN 346
           +  DL++N L   IP  G+   L++L  I L NN
Sbjct: 84  TQLDLNDNHLKS-IP-RGAFDNLKSLTHIYLYNN 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	901
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.71
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.69
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.69
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.69
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.58
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.57
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.52
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.51
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.49
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.48
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.48
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.47
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.41
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.37
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.37
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.36
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.34
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.34
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.33
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.32
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.3
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.25
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.07
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.06
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.02
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.72
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.68
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.58
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.51
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.26
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.26
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.24
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.1
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.87
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.78
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.74
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.47
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.35

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.9e-91  Score=843.86  Aligned_cols=739  Identities=30%  Similarity=0.434  Sum_probs=553.4

Q ss_pred             cCCCCCCHHHHHHHHHhhhcCcCCCCCccccccCCCcCCCCCCCCCCcCccceeecCCCCeEEEEEcCCCCCCCC---CC
Q 041976           22 SYAKHCPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKDTNCCSWDGVTCDMATGNVISLDLSCSWLHGN---IP   98 (901)
Q Consensus        22 ~~~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~g~---~~   98 (901)
                      .++..+.++||+|||+||+++.++.           .+++|..+++||.|+||+|+  +|+|++|+|++..+.|.   ++
T Consensus         4 ~~~~~~~~~~~~all~~k~~~~~~~-----------~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~   70 (768)
T 3rgz_A            4 ASPSQSLYREIHQLISFKDVLPDKN-----------LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVS   70 (768)
T ss_dssp             ----CCHHHHHHHHHHHHTTCSCTT-----------SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHH
T ss_pred             CccccCCHHHHHHHHHHHhhCCCcc-----------cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccC
Confidence            3445567899999999999997432           58999988899999999998  69999999999999998   87


Q ss_pred             CCcccccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCc--ccccccccccchhhcccCCCCccEEE
Q 041976           99 TNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPY--EISFLKMSTVVLDSLKNLSSSLTSLS  176 (901)
Q Consensus        99 ~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~--~l~~l~~~~~~~~~~~~l~~~L~~L~  176 (901)
                      +  ++.++++|+.++++.+.+..  +|+.++++++|++|+|++|.+.|.+|.  .++++              ++|++|+
T Consensus        71 ~--~l~~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l--------------~~L~~L~  132 (768)
T 3rgz_A           71 S--SLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC--------------SGLKFLN  132 (768)
T ss_dssp             H--HTTTCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGC--------------TTCCEEE
T ss_pred             h--hHhccCcccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCC--------------CCCCEEE
Confidence            7  89999999999999998744  678899999999999999999999998  89999              9999999


Q ss_pred             cCCCcCCCCCcccc-CCCCCCCEEeCCCCCCCCccCCC----CCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCC
Q 041976          177 LSDCILQGNFPINI-FHLPNPQMIRLSQNPSLAGKFPA----NNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYS  251 (901)
Q Consensus       177 Ls~~~~~~~~p~~l-~~l~~L~~L~L~~n~~l~~~~~~----~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n  251 (901)
                      +++|.+.+..|..+ .++++|++|++++| .+++..|.    +..+++|++|++++|.+..... +..+++|++|++++|
T Consensus       133 Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n  210 (768)
T 3rgz_A          133 VSSNTLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSN  210 (768)
T ss_dssp             CCSSEEECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSS
T ss_pred             CcCCccCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCC
Confidence            99999999888876 89999999999999 88887764    5778899999999998886533 378889999999999


Q ss_pred             CCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCcc
Q 041976          252 QFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSH  331 (901)
Q Consensus       252 ~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  331 (901)
                      .+.+.+|. ++++++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..
T Consensus       211 ~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~  288 (768)
T 3rgz_A          211 NFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDF  288 (768)
T ss_dssp             CCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCC
T ss_pred             cCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHH
Confidence            99887776 888999999999999998888888999999999999999888877766 7888999999999888888888


Q ss_pred             ccCC-cCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCC---CCCCCCEEEccCccCCCCCchhhhccc-
Q 041976          332 GSRL-QNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF---PSKSLQNIYLSNNRLQGSIPSSIFELV-  406 (901)
Q Consensus       332 ~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~~~L~~L~L~~n~l~~~~~~~~~~l~-  406 (901)
                      +... ++|++|++++|.+++.+|..++.+++|++|++++|.+.+.++..   .+++|++|++++|.+++.+|..+..++ 
T Consensus       289 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  368 (768)
T 3rgz_A          289 LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA  368 (768)
T ss_dssp             SCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTT
T ss_pred             HHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhc
Confidence            8765 88999999999888888888888888888888888777555431   445555555555555555555555554 


Q ss_pred             ccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCC-CCChhhccCCCCCEEe
Q 041976          407 NLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNIS-AFPRFLRTQDELSYLD  485 (901)
Q Consensus       407 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~-~lp~~l~~~~~L~~L~  485 (901)
                      +|++|++++|.+++..++ .+..                       ..+++|++|++++|+++ .+|..+..+++|++|+
T Consensus       369 ~L~~L~Ls~N~l~~~~~~-~~~~-----------------------~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  424 (768)
T 3rgz_A          369 SLLTLDLSSNNFSGPILP-NLCQ-----------------------NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH  424 (768)
T ss_dssp             TCSEEECCSSEEEEECCT-TTTC-----------------------STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEE
T ss_pred             CCcEEEccCCCcCCCcCh-hhhh-----------------------cccCCccEEECCCCccccccCHHHhcCCCCCEEE
Confidence            555555555555443331 1111                       11344455555555444 4566677777777777


Q ss_pred             CCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCcccccccc
Q 041976          486 LSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIH  565 (901)
Q Consensus       486 ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~  565 (901)
                      +++|++.+.+|..+  ..+                                          ++|++|++++|.+++.+|.
T Consensus       425 Ls~N~l~~~~p~~l--~~l------------------------------------------~~L~~L~L~~n~l~~~~p~  460 (768)
T 3rgz_A          425 LSFNYLSGTIPSSL--GSL------------------------------------------SKLRDLKLWLNMLEGEIPQ  460 (768)
T ss_dssp             CCSSEEESCCCGGG--GGC------------------------------------------TTCCEEECCSSCCCSCCCG
T ss_pred             CcCCcccCcccHHH--hcC------------------------------------------CCCCEEECCCCcccCcCCH
Confidence            77777777777665  222                                          3455555566666666777


Q ss_pred             ccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCc
Q 041976          566 SICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTK  645 (901)
Q Consensus       566 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  645 (901)
                      .+..+++|++|++++|.+++.+|..+..+. +|++|++++|++++.+|..|+.+++|++|++++|++++.+|..+..+++
T Consensus       461 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  539 (768)
T 3rgz_A          461 ELMYVKTLETLILDFNDLTGEIPSGLSNCT-NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS  539 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTT
T ss_pred             HHcCCCCceEEEecCCcccCcCCHHHhcCC-CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence            777777777777777777777777777765 7777777777777777777777777777777777777777777777777


Q ss_pred             ccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhccc
Q 041976          646 VEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVS  725 (901)
Q Consensus       646 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~  725 (901)
                      |++|++++|++++.+|.++.....+..+.+..+.-...+.... ...........+   .+.+..+.. +..+..+..++
T Consensus       540 L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~-~~~l~~~~~~~  614 (768)
T 3rgz_A          540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG-MKKECHGAGNLL---EFQGIRSEQ-LNRLSTRNPCN  614 (768)
T ss_dssp             CCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCS-CCTTCCSSEEEE---ECTTCCGGG-GGGGGGTCCSC
T ss_pred             CCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccc-cccccccccccc---ccccccchh-hhccccccccc
Confidence            7777777777777777777666555444333211000000000 000000000000   122333322 12233333333


Q ss_pred             ccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccC
Q 041976          726 ADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGN  805 (901)
Q Consensus       726 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  805 (901)
                      +..+.+.....                .....++.|+.|||++|+++|.+|..++++++|++|+|++|+++|.+|..|++
T Consensus       615 l~~~~~~g~~~----------------~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~  678 (768)
T 3rgz_A          615 ITSRVYGGHTS----------------PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD  678 (768)
T ss_dssp             TTSCEEEEECC----------------CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred             cccceecccCc----------------hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhC
Confidence            33322211100                01122678999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCCCCCCCCcccccccCCcCCCCCCCCCCCCCCCCCCCC
Q 041976          806 LAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKCGNDEAPTTF  885 (901)
Q Consensus       806 L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~~~n~~lcg~~l~~~c~~~~~~~~~  885 (901)
                      +++|++|||++|+++|.+|+.+..+++|++|||++|+++|.||.++||.+|...+|.||+++||.|+. .|.... +.+|
T Consensus       679 L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~-~~~~  756 (768)
T 3rgz_A          679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN-ADGY  756 (768)
T ss_dssp             CTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-----
T ss_pred             CCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc-cCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999986 886544 4667


Q ss_pred             CC
Q 041976          886 HE  887 (901)
Q Consensus       886 ~~  887 (901)
                      +.
T Consensus       757 ~~  758 (768)
T 3rgz_A          757 AH  758 (768)
T ss_dssp             --
T ss_pred             CC
Confidence            63

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.2e-69  Score=656.70  Aligned_cols=646  Identities=30%  Similarity=0.432  Sum_probs=503.3

Q ss_pred             ccCceEeCCCCCCCCC--cCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCC
Q 041976          107 LHLQTLNLSHNDFDYS--EISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQG  184 (901)
Q Consensus       107 ~~L~~L~Ls~n~~~~~--~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~  184 (901)
                      .+++.|+|+++.+.+.  .+|+.+.++++|+.++++.+.+. .+|..++.+              ++|++|+|++|.+.|
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l--------------~~L~~L~Ls~n~l~~  114 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCS--------------ASLTSLDLSRNSLSG  114 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCC--------------TTCCEEECCSSEEEE
T ss_pred             CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCchhhccC--------------CCCCEEECCCCcCCC
Confidence            4788999999988763  26778888999999999888764 467888888              899999999999988


Q ss_pred             CCcc--ccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccc-cCCCCcCEEECCCCCCccCCCcc-
Q 041976          185 NFPI--NIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSI-GNLKLLGRLMLGYSQFVGPVPAS-  260 (901)
Q Consensus       185 ~~p~--~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l-~~l~~L~~L~L~~n~~~~~~p~~-  260 (901)
                      .+|.  .++++++|++|++++| .+.+.+|                      ..+ .++++|++|++++|.+.+..|.. 
T Consensus       115 ~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~----------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  171 (768)
T 3rgz_A          115 PVTTLTSLGSCSGLKFLNVSSN-TLDFPGK----------------------VSGGLKLNSLEVLDLSANSISGANVVGW  171 (768)
T ss_dssp             EGGGGGGGGGCTTCCEEECCSS-EEECCSS----------------------CCSCCCCTTCSEEECCSSCCEEETHHHH
T ss_pred             cCCChHHHhCCCCCCEEECcCC-ccCCcCC----------------------HHHhccCCCCCEEECCCCccCCcCChhh
Confidence            8888  8888999999999888 6666655                      333 77888999999999888877766 


Q ss_pred             --ccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCC
Q 041976          261 --LGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNL  338 (901)
Q Consensus       261 --l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  338 (901)
                        +.++++|++|++++|.+++..|.  ..+++|++|++++|.+.+.+|.+.++++|++|++++|.+++.+|..++.+++|
T Consensus       172 ~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  249 (768)
T 3rgz_A          172 VLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTEL  249 (768)
T ss_dssp             HHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSC
T ss_pred             hhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCC
Confidence              78888888999888888876653  77888888888888888877778888888888888888888888888888888


Q ss_pred             cEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCC--C-CCCCCEEEccCccCCCCCchhhhcccccCceeccc
Q 041976          339 VLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF--P-SKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDS  415 (901)
Q Consensus       339 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  415 (901)
                      ++|++++|.+++.+|..  .+++|++|++++|.+++.+|..  . +++|++|++++|.+++.+|..++.+++|++|++++
T Consensus       250 ~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~  327 (768)
T 3rgz_A          250 KLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS  327 (768)
T ss_dssp             CEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCS
T ss_pred             CEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCC
Confidence            88888888888777654  7778888888888887666654  2 37777888877777777777777777777777777


Q ss_pred             CcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCC-CCCEEeCCCCccccc
Q 041976          416 NNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQD-ELSYLDLSENKIDGQ  494 (901)
Q Consensus       416 n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~-~L~~L~ls~n~l~~~  494 (901)
                      |.+.+..+...+..+++|++|++++|.+++                        .+|..+..++ +|++|++++|++.+.
T Consensus       328 n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~------------------------~~p~~l~~l~~~L~~L~Ls~N~l~~~  383 (768)
T 3rgz_A          328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSG------------------------ELPESLTNLSASLLTLDLSSNNFSGP  383 (768)
T ss_dssp             SEEEEECCHHHHTTCTTCCEEECCSSEEEE------------------------CCCTTHHHHTTTCSEEECCSSEEEEE
T ss_pred             CcccCcCCHHHHhcCCCCCEEeCcCCccCc------------------------cccHHHHhhhcCCcEEEccCCCcCCC
Confidence            777766555556666666666666665543                        2345555555 777777777777776


Q ss_pred             CChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCC
Q 041976          495 IPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALD  574 (901)
Q Consensus       495 ~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  574 (901)
                      +|..+...                                          .+++|++|++++|.+++.+|..+.++++|+
T Consensus       384 ~~~~~~~~------------------------------------------~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~  421 (768)
T 3rgz_A          384 ILPNLCQN------------------------------------------PKNTLQELYLQNNGFTGKIPPTLSNCSELV  421 (768)
T ss_dssp             CCTTTTCS------------------------------------------TTCCCCEEECCSSEEEEECCGGGGGCTTCC
T ss_pred             cChhhhhc------------------------------------------ccCCccEEECCCCccccccCHHHhcCCCCC
Confidence            66554211                                          124577777788888888888888899999


Q ss_pred             EEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCC
Q 041976          575 VLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNI  654 (901)
Q Consensus       575 ~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n  654 (901)
                      +|++++|.+++.+|..+..+. +|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+.++++|++|++++|
T Consensus       422 ~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N  500 (768)
T 3rgz_A          422 SLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN  500 (768)
T ss_dssp             EEECCSSEEESCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred             EEECcCCcccCcccHHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCC
Confidence            999999999888888888886 8999999999999888888989999999999999999888989999999999999999


Q ss_pred             cCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhccccc-CCcccc
Q 041976          655 KINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSAD-EGKLRY  733 (901)
Q Consensus       655 ~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~-~~~~~~  733 (901)
                      ++++.+|.+++.+++|++|++++|++.+.+|...  ..+++|+.|++++|+++|.+|..++... .+..+... ++.+.+
T Consensus       501 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~g~ip~~~~~~~-~~~~~~~~~~~~~~~  577 (768)
T 3rgz_A          501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLFNGTIPAAMFKQS-GKIAANFIAGKRYVY  577 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSEEESBCCGGGGTTT-TCBCCSTTCSCEEEE
T ss_pred             ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCccCCcCChHHhccc-chhhhhccccccccc
Confidence            9998999999999999999999999988877654  6788999999999999999997764322 22222221 111111


Q ss_pred             cCccc-----eeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCC
Q 041976          734 LGEEY-----YQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAK  808 (901)
Q Consensus       734 l~~~~-----~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~  808 (901)
                      +....     ..........+........+..+..++++.|.++|.+|..++.+++|++|||++|+++|.+|..|+++++
T Consensus       578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~  657 (768)
T 3rgz_A          578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY  657 (768)
T ss_dssp             EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTT
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcccc
Confidence            11100     0000111122222222233556677889999999999999999999999999999999999999999999


Q ss_pred             CCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCCC-CCCCCcccccccCC
Q 041976          809 LESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHG-PQFNTFQEDSYIGN  864 (901)
Q Consensus       809 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~-~~~~~~~~~~~~~n  864 (901)
                      |+.|+|++|+++|.+|+.++++++|++|||++|+++|.||.. ..+..+......+|
T Consensus       658 L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N  714 (768)
T 3rgz_A          658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN  714 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred             CCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence            999999999999999999999999999999999999999975 23444444444444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.5e-57  Score=544.70  Aligned_cols=600  Identities=22%  Similarity=0.260  Sum_probs=401.5

Q ss_pred             ceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccc
Q 041976          110 QTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPIN  189 (901)
Q Consensus       110 ~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~  189 (901)
                      +.+|.+++.++.  +|..+.  +++++|+|++|.+.+..|..++++              ++|++|++++|.+++..|..
T Consensus         7 ~~~~cs~~~L~~--ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l--------------~~L~~L~Ls~n~l~~~~~~~   68 (680)
T 1ziw_A            7 EVADCSHLKLTQ--VPDDLP--TNITVLNLTHNQLRRLPAANFTRY--------------SQLTSLDVGFNTISKLEPEL   68 (680)
T ss_dssp             SEEECCSSCCSS--CCSCSC--TTCSEEECCSSCCCCCCGGGGGGG--------------TTCSEEECCSSCCCCCCTTH
T ss_pred             CeeECCCCCccc--cccccC--CCCcEEECCCCCCCCcCHHHHhCC--------------CcCcEEECCCCccCccCHHH
Confidence            467777777765  666554  677777777777765555556666              77777777777777666666


Q ss_pred             cCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCc-cccCCCCcCEEECCCCCCccCCCccccCCCCCC
Q 041976          190 IFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPD-SIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLT  268 (901)
Q Consensus       190 l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~  268 (901)
                      ++++++|++|++++| .+                       +.+|. .++++++|++|++++|.+.+..|..++++++|+
T Consensus        69 ~~~l~~L~~L~L~~n-~l-----------------------~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  124 (680)
T 1ziw_A           69 CQKLPMLKVLNLQHN-EL-----------------------SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI  124 (680)
T ss_dssp             HHHCTTCCEEECCSS-CC-----------------------CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred             HhcccCcCEEECCCC-cc-----------------------CccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence            666666666666666 33                       33434 588888999999999988877777888899999


Q ss_pred             EEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC---CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcC
Q 041976          269 LLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD---IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNN  345 (901)
Q Consensus       269 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  345 (901)
                      +|++++|.+++..|..++++++|++|++++|.+++..+.   ...+++|++|++++|.+++..|..+..+++|+.+++.+
T Consensus       125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  204 (680)
T 1ziw_A          125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN  204 (680)
T ss_dssp             EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTT
T ss_pred             EEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccc
Confidence            999999988888888888888999999998888876654   23567888888888888888888888888888888888


Q ss_pred             CcCcccCChhhc---CCCCCcEEEccCCccccccCCC--CC--CCCCEEEccCccCCCCCchhhhcccccCceecccCcC
Q 041976          346 NSFSGTIPSWLF---SLPLLEYVRLSDNQLSGHIDEF--PS--KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNF  418 (901)
Q Consensus       346 n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~--~~--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  418 (901)
                      +.+.+.....+.   ..++|++|++++|.+.+..+..  .+  ++|+.|++++|.+++..|..|+.+++|++|++++|.+
T Consensus       205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  284 (680)
T 1ziw_A          205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI  284 (680)
T ss_dssp             CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred             cccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCcc
Confidence            876543222211   3467777777777776655443  22  3477777777777766666677777777777777777


Q ss_pred             CCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCCh----hhccCCCCCEEeCCCCccccc
Q 041976          419 SGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPR----FLRTQDELSYLDLSENKIDGQ  494 (901)
Q Consensus       419 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~----~l~~~~~L~~L~ls~n~l~~~  494 (901)
                      .+..+ ..+.++++|++|++++|.......                   +..+|.    .+..+++|++|++++|.+.+.
T Consensus       285 ~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~-------------------~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~  344 (680)
T 1ziw_A          285 QHLFS-HSLHGLFNVRYLNLKRSFTKQSIS-------------------LASLPKIDDFSFQWLKCLEHLNMEDNDIPGI  344 (680)
T ss_dssp             SEECT-TTTTTCTTCCEEECTTCBCCC-------------------------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred             CccCh-hhhcCCCCccEEeccchhhhcccc-------------------cccccccChhhcccCCCCCEEECCCCccCCC
Confidence            66544 566667777777776554321110                   002221    456677788888888877776


Q ss_pred             CChhhhhcCCCCccEEEcCCCccCC--cccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCC
Q 041976          495 IPSWISEIGKDSLSYVNLSHNFITK--MKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIA  572 (901)
Q Consensus       495 ~p~~~~~~~~~~L~~L~ls~n~l~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  572 (901)
                      .+..+  ..+++|++|++++|.+..  ++...|..+                ..++|+.|++++|++++..+..+..+++
T Consensus       345 ~~~~~--~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~----------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~  406 (680)
T 1ziw_A          345 KSNMF--TGLINLKYLSLSNSFTSLRTLTNETFVSL----------------AHSPLHILNLTKNKISKIESDAFSWLGH  406 (680)
T ss_dssp             CTTTT--TTCTTCCEEECTTCBSCCCEECTTTTGGG----------------TTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             ChhHh--ccccCCcEEECCCCchhhhhcchhhhccc----------------ccCcCceEECCCCCCCeEChhhhhCCCC
Confidence            66666  455666666666664321  111111100                0135666666666666666666666666


Q ss_pred             CCEEECCCCcCcccCC-cchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCccc--ccCCccccCCCcccEE
Q 041976          573 LDVLDLSNNRLNGTIP-ECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELG--GAIPQSLVNCTKVEVL  649 (901)
Q Consensus       573 L~~L~Ls~n~l~~~~p-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~l~~l~~L~~L  649 (901)
                      |++|++++|.+++.+| ..+..+. +|++|++++|++.+..+..|..+++|+.|++++|.+.  +..|..|..+++|++|
T Consensus       407 L~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L  485 (680)
T 1ziw_A          407 LEVLDLGLNEIGQELTGQEWRGLE-NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL  485 (680)
T ss_dssp             CCEEECCSSCCEEECCSGGGTTCT-TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred             CCEEeCCCCcCccccCcccccCcc-cccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence            6666666666665555 3344443 6666666666666666666666666666666666654  3455556666666666


Q ss_pred             eCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCC
Q 041976          650 DIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEG  729 (901)
Q Consensus       650 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~  729 (901)
                      ++++|++++..+..+.++++|++|++++|++.+......                      |..                
T Consensus       486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----------------------~~~----------------  527 (680)
T 1ziw_A          486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN----------------------PGG----------------  527 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTS----------------------TTS----------------
T ss_pred             ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhc----------------------cCC----------------
Confidence            666666665555555555555555555555543211100                      000                


Q ss_pred             cccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCC
Q 041976          730 KLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKL  809 (901)
Q Consensus       730 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L  809 (901)
                      ..                     .....+++|++|+|++|+++...+..|+++++|++|+|++|++++..+..|.++++|
T Consensus       528 ~~---------------------~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L  586 (680)
T 1ziw_A          528 PI---------------------YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL  586 (680)
T ss_dssp             CC---------------------CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cc---------------------hhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCC
Confidence            00                     000115677888888888885555678899999999999999998888888999999


Q ss_pred             CEEeCCCCccCCCCCcCCc-CCCCCCeeeCCCCcCccCCCC
Q 041976          810 ESLDLSSNNVAGKIPKPLT-SLTSLSVLNLSHNRLDGPIPH  849 (901)
Q Consensus       810 ~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g~iP~  849 (901)
                      +.|+|++|++++..|..+. .+++|+.|++++|++...-+.
T Consensus       587 ~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          587 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            9999999999988888777 788999999999999876553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.1e-56  Score=539.11  Aligned_cols=594  Identities=22%  Similarity=0.221  Sum_probs=446.8

Q ss_pred             ceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCc
Q 041976          221 EYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNS  300 (901)
Q Consensus       221 ~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  300 (901)
                      +.+++++++++.+|..+.  +++++|++++|.+.+..+..+.++++|++|++++|.+++..|..|+++++|++|++++|.
T Consensus         7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~   84 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE   84 (680)
T ss_dssp             SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred             CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence            456777777777776654  577788888877777666677777888888888887777777777778888888888887


Q ss_pred             CcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCC
Q 041976          301 FFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF  379 (901)
Q Consensus       301 l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  379 (901)
                      +++..+. +.++++|++|++++|.+.+..|..++++++|++|++++|.+++..+..++.+++|++|++++|.+++..+..
T Consensus        85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  164 (680)
T 1ziw_A           85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE  164 (680)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred             cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH
Confidence            7766554 777778888888888777666677777888888888888877777777777888888888887776654431


Q ss_pred             ----CCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhh--hhhcCCCcEEEccCCccccccccccCC
Q 041976          380 ----PSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYM--FAKLIKLKYLYLSHNSLSLGNTFKIDS  453 (901)
Q Consensus       380 ----~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~  453 (901)
                          .+++|+.|++++|.+++..|..+..+++|+.+++.++.+........  ....++|++|++++|.+++.....+..
T Consensus       165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~  244 (680)
T 1ziw_A          165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG  244 (680)
T ss_dssp             HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG
T ss_pred             hhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc
Confidence                44678888888888887778888888888888888877653321110  012367888888888777654433321


Q ss_pred             -CCCCccEEecCCcCCCCCC-hhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCccc-CCCCCCce
Q 041976          454 -PFPKFSYLSLSACNISAFP-RFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQ-IPWKNLGY  530 (901)
Q Consensus       454 -~~~~L~~L~l~~~~l~~lp-~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~L~~  530 (901)
                       ..++|++|++++|+++.++ ..+..+++|++|++++|.+.+..|..+  ..+++|+.+++++|....... ..++.+  
T Consensus       245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~~~~~~~~~~~~lp~i--  320 (680)
T 1ziw_A          245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL--HGLFNVRYLNLKRSFTKQSISLASLPKI--  320 (680)
T ss_dssp             GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTT--TTCTTCCEEECTTCBCCC------CCEE--
T ss_pred             cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhh--cCCCCccEEeccchhhhccccccccccc--
Confidence             1144888888888777554 567778888888888888887777777  566777888777654332110 001110  


Q ss_pred             eeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCccc-CCc-chhcC-CCCccEEECCCCc
Q 041976          531 LDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGT-IPE-CIGNF-SPSLSVLDLRNNR  607 (901)
Q Consensus       531 L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~-~~~~~-~~~L~~L~L~~n~  607 (901)
                              .......+++|++|++++|.+++..+..+.++++|++|++++|.+... ++. .+... .++|+.|++++|+
T Consensus       321 --------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~  392 (680)
T 1ziw_A          321 --------DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK  392 (680)
T ss_dssp             --------CTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC
T ss_pred             --------ChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC
Confidence                    011122357899999999999998888899999999999999986432 222 22222 1489999999999


Q ss_pred             ccccCCcCccCCCccCEEEccCCcccccCC-ccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcc--cC
Q 041976          608 LNGSIPGTFAESNWLRSLNLNNNELGGAIP-QSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHG--SV  684 (901)
Q Consensus       608 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~--~~  684 (901)
                      +++..|..|..+++|++|++++|++++.+| ..|.++++|++|++++|++.+..+..+..+++|++|++++|.+.+  .+
T Consensus       393 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  472 (680)
T 1ziw_A          393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS  472 (680)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCS
T ss_pred             CCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccC
Confidence            999999999999999999999999987666 679999999999999999999999999999999999999999863  34


Q ss_pred             CCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEE
Q 041976          685 REFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTI  764 (901)
Q Consensus       685 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  764 (901)
                      +..  +..+++|+.|++++|++++..+..+ .+                                        +++|++|
T Consensus       473 p~~--~~~l~~L~~L~Ls~N~l~~i~~~~~-~~----------------------------------------l~~L~~L  509 (680)
T 1ziw_A          473 PSP--FQPLRNLTILDLSNNNIANINDDML-EG----------------------------------------LEKLEIL  509 (680)
T ss_dssp             SCT--TTTCTTCCEEECCSSCCCCCCTTTT-TT----------------------------------------CTTCCEE
T ss_pred             Ccc--cccCCCCCEEECCCCCCCcCChhhh-cc----------------------------------------ccccCEE
Confidence            433  4788999999999999986544322 11                                        5678888


Q ss_pred             Eccccccccccc--------hhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCee
Q 041976          765 DFSSNGFDGEIS--------QVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVL  836 (901)
Q Consensus       765 ~Ls~N~l~~~~~--------~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  836 (901)
                      ++++|++++..+        ..|+++++|++|+|++|+++.+.+..|+++++|+.|||++|++++..+..|..+++|++|
T Consensus       510 ~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L  589 (680)
T 1ziw_A          510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL  589 (680)
T ss_dssp             ECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             eCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEE
Confidence            999998886432        247899999999999999997766789999999999999999998888889999999999


Q ss_pred             eCCCCcCccCCCCCC--CCCCcccccccCCcCCCCCC
Q 041976          837 NLSHNRLDGPIPHGP--QFNTFQEDSYIGNLGLCGFP  871 (901)
Q Consensus       837 ~Ls~N~l~g~iP~~~--~~~~~~~~~~~~n~~lcg~~  871 (901)
                      +|++|++++..|...  .+..+....+.|||..|+|+
T Consensus       590 ~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          590 NLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             ECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             ECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            999999998666432  34566666677777766654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.3e-52  Score=494.66  Aligned_cols=520  Identities=19%  Similarity=0.178  Sum_probs=328.8

Q ss_pred             CcceeecCCCCCccC-CccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEcc
Q 041976          219 PIEYLDVSETSFSEL-PDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLS  297 (901)
Q Consensus       219 ~L~~L~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  297 (901)
                      .+++|++++|.++.+ |..++++++|++|++++|.+.+..|.+|+++++|++|++++|.+++..|..|+++++|++|+++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  113 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI  113 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence            455555555555544 3345555555555555555555445555555555555555555555555555555555555555


Q ss_pred             CCcCcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCc--EEEccCCcccc
Q 041976          298 SNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLE--YVRLSDNQLSG  374 (901)
Q Consensus       298 ~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~~  374 (901)
                      +|.+++..+. +.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..++.+++|+  +|++++|.+.+
T Consensus       114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~  193 (606)
T 3t6q_A          114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG  193 (606)
T ss_dssp             TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred             ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence            5555543322 44555555555555555542222222355555555555555544445555555555  44555554444


Q ss_pred             ccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCC
Q 041976          375 HIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSP  454 (901)
Q Consensus       375 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  454 (901)
                      ..+.                      .+.. .+|+.|++++|..    .+..+..+.+++...+....+....       
T Consensus       194 ~~~~----------------------~~~~-~~L~~L~l~~~~~----~~~~~~~l~~~~l~~l~~~~~~~~~-------  239 (606)
T 3t6q_A          194 IEPG----------------------AFDS-AVFQSLNFGGTQN----LLVIFKGLKNSTIQSLWLGTFEDMD-------  239 (606)
T ss_dssp             ECTT----------------------TTTT-CEEEEEECTTCSC----HHHHHHHTTTCEEEEEECCCCTTSC-------
T ss_pred             cChh----------------------Hhhh-ccccccccCCchh----HHHHhhhccccchhheechhhcccc-------
Confidence            3332                      2221 2344444444431    0123333333332222221111000       


Q ss_pred             CCCccEEecCCcCCCCCC-hhhccCC--CCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCcee
Q 041976          455 FPKFSYLSLSACNISAFP-RFLRTQD--ELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYL  531 (901)
Q Consensus       455 ~~~L~~L~l~~~~l~~lp-~~l~~~~--~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L  531 (901)
                           .        ..++ ..+..+.  +|+.|++++|.+.+..+..+  ..+++|+.|++++|.++.++.. +      
T Consensus       240 -----~--------~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~lp~~-l------  297 (606)
T 3t6q_A          240 -----D--------EDISPAVFEGLCEMSVESINLQKHYFFNISSNTF--HCFSGLQELDLTATHLSELPSG-L------  297 (606)
T ss_dssp             -----C--------CCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTT--TTCTTCSEEECTTSCCSCCCSS-C------
T ss_pred             -----c--------cccChhHhchhhcCceeEEEeecCccCccCHHHh--ccccCCCEEeccCCccCCCChh-h------
Confidence                 0        0000 1111111  34555555555554444444  3344444444444444433221 0      


Q ss_pred             eccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcc-hhcCCCCccEEECCCCcccc
Q 041976          532 DLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPEC-IGNFSPSLSVLDLRNNRLNG  610 (901)
Q Consensus       532 ~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~~~~~L~~L~L~~n~l~~  610 (901)
                                  ..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.+|.. +..+. +|++|++++|.+++
T Consensus       298 ------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~  364 (606)
T 3t6q_A          298 ------------VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE-NLRELDLSHDDIET  364 (606)
T ss_dssp             ------------CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT-TCCEEECCSSCCCE
T ss_pred             ------------cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC-cCCEEECCCCcccc
Confidence                        11356677777777777777777888888888888888888777655 55554 88888998888887


Q ss_pred             cC--CcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCcccc-ccCCCCCcEEEccCCcCcccCCCC
Q 041976          611 SI--PGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYW-LGNLPELQVLVLRSNKFHGSVREF  687 (901)
Q Consensus       611 ~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~~~~~~~~~  687 (901)
                      ..  +..+..+++|++|++++|++.+..|..|..+++|++|++++|++.+..+.. +..+++|++|++++|.+.+..+..
T Consensus       365 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  444 (606)
T 3t6q_A          365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL  444 (606)
T ss_dssp             EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT
T ss_pred             ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHH
Confidence            65  777888888999999999888888888888889999999999888776544 788889999999999887766654


Q ss_pred             CCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEcc
Q 041976          688 EPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFS  767 (901)
Q Consensus       688 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls  767 (901)
                      .  ..+++|++|++++|++.+......                      .                ....+++|++|+++
T Consensus       445 ~--~~l~~L~~L~L~~n~l~~~~~~~~----------------------~----------------~~~~l~~L~~L~Ls  484 (606)
T 3t6q_A          445 F--DGLPALQHLNLQGNHFPKGNIQKT----------------------N----------------SLQTLGRLEILVLS  484 (606)
T ss_dssp             T--TTCTTCCEEECTTCBCGGGEECSS----------------------C----------------GGGGCTTCCEEECT
T ss_pred             H--hCCCCCCEEECCCCCCCccccccc----------------------h----------------hhccCCCccEEECC
Confidence            4  678889999999998875211000                      0                00125788999999


Q ss_pred             ccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCC
Q 041976          768 SNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPI  847 (901)
Q Consensus       768 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i  847 (901)
                      +|++++..|..|+++++|++|+|++|++++.+|..|+++++| .|+|++|++++..|..+..+++|++|++++|++.+..
T Consensus       485 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  563 (606)
T 3t6q_A          485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC  563 (606)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred             CCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence            999999999999999999999999999999999999999999 9999999999999999999999999999999999865


Q ss_pred             C
Q 041976          848 P  848 (901)
Q Consensus       848 P  848 (901)
                      +
T Consensus       564 ~  564 (606)
T 3t6q_A          564 S  564 (606)
T ss_dssp             G
T ss_pred             C
Confidence            5

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.4e-51  Score=488.01  Aligned_cols=541  Identities=22%  Similarity=0.231  Sum_probs=401.5

Q ss_pred             CceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCC
Q 041976          134 LTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPA  213 (901)
Q Consensus       134 L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~  213 (901)
                      -++++.++..++ .+|..+.                +.+++|++++|.+++..|..++++++|++|+|++| .+.+..| 
T Consensus        14 ~~~~~c~~~~l~-~iP~~l~----------------~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~-   74 (606)
T 3t6q_A           14 NKTYNCENLGLN-EIPGTLP----------------NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHE-   74 (606)
T ss_dssp             TTEEECTTSCCS-SCCTTSC----------------TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECT-
T ss_pred             CceEECCCCCcc-cCcCCCC----------------CcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeCh-
Confidence            356777777665 5665543                67888888888888777777888888888888877 5555444 


Q ss_pred             CCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCE
Q 041976          214 NNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTY  293 (901)
Q Consensus       214 ~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  293 (901)
                                           ..|+++++|++|++++|.+.+..|..++++++|++|++++|.+++..+..++++++|++
T Consensus        75 ---------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~  133 (606)
T 3t6q_A           75 ---------------------DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES  133 (606)
T ss_dssp             ---------------------TTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCE
T ss_pred             ---------------------hhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccE
Confidence                                 78999999999999999999988999999999999999999999877888999999999


Q ss_pred             EEccCCcCccc-CCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCc--EEECcCCcCcccCChhhcCCCCCcEEEccCC
Q 041976          294 LDLSSNSFFGE-IPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLV--LIRLNNNSFSGTIPSWLFSLPLLEYVRLSDN  370 (901)
Q Consensus       294 L~Ls~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  370 (901)
                      |++++|.+.+. .|.+..+++|++|++++|.+++..+..++.+++|+  +|++++|.+++..|..+.. .+|++|++++|
T Consensus       134 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~  212 (606)
T 3t6q_A          134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGT  212 (606)
T ss_dssp             EECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTC
T ss_pred             EECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCc
Confidence            99999999984 35577799999999999999988888999999999  9999999999887776644 67888888887


Q ss_pred             ccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcC--CCcEEEccCCccccccc
Q 041976          371 QLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLI--KLKYLYLSHNSLSLGNT  448 (901)
Q Consensus       371 ~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~  448 (901)
                      ....... ..+..++...+....+.           .+...++         ....+..+.  +|+.|++++|.++....
T Consensus       213 ~~~~~~~-~~l~~~~l~~l~~~~~~-----------~~~~~~i---------~~~~~~~l~~~~L~~L~l~~n~l~~~~~  271 (606)
T 3t6q_A          213 QNLLVIF-KGLKNSTIQSLWLGTFE-----------DMDDEDI---------SPAVFEGLCEMSVESINLQKHYFFNISS  271 (606)
T ss_dssp             SCHHHHH-HHTTTCEEEEEECCCCT-----------TSCCCCC---------CGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred             hhHHHHh-hhccccchhheechhhc-----------ccccccc---------ChhHhchhhcCceeEEEeecCccCccCH
Confidence            5211000 01111111111111110           1111111         112233322  55666666666554332


Q ss_pred             cccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCC
Q 041976          449 FKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNL  528 (901)
Q Consensus       449 ~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L  528 (901)
                      .. ...+++|++|++++|.++.+|..+..+++|++|++++|++.+..|..+  ..++                       
T Consensus       272 ~~-~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~l~-----------------------  325 (606)
T 3t6q_A          272 NT-FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA--SNFP-----------------------  325 (606)
T ss_dssp             TT-TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCG--GGCT-----------------------
T ss_pred             HH-hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhh--hccC-----------------------
Confidence            22 234566666666666666777777777777777777777776655554  3333                       


Q ss_pred             ceeeccCccccCCCCCCCCCCcEEEccCCcccccccc-ccccCCCCCEEECCCCcCcccC--CcchhcCCCCccEEECCC
Q 041976          529 GYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIH-SICDIIALDVLDLSNNRLNGTI--PECIGNFSPSLSVLDLRN  605 (901)
Q Consensus       529 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~--p~~~~~~~~~L~~L~L~~  605 (901)
                                         +|++|++++|.+.+.++. .+..+++|++|++++|.+.+..  +..+..+. +|++|++++
T Consensus       326 -------------------~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-~L~~L~l~~  385 (606)
T 3t6q_A          326 -------------------SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS-HLQSLNLSY  385 (606)
T ss_dssp             -------------------TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCT-TCCEEECCS
T ss_pred             -------------------cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCC-CCCEEECCC
Confidence                               344444444555433333 3667788888888888887554  56666665 888888888


Q ss_pred             CcccccCCcCccCCCccCEEEccCCcccccCCcc-ccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCccc-
Q 041976          606 NRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQS-LVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGS-  683 (901)
Q Consensus       606 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~-  683 (901)
                      |++.+..|..|..+++|++|++++|++++..+.. +..+++|++|++++|.+.+..|..+..+++|++|++++|++.+. 
T Consensus       386 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  465 (606)
T 3t6q_A          386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN  465 (606)
T ss_dssp             CSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGE
T ss_pred             CcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccc
Confidence            8888888888888888888888888888766544 78888888888888888888888888888888888888888763 


Q ss_pred             CCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeE
Q 041976          684 VREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTT  763 (901)
Q Consensus       684 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  763 (901)
                      ++....+..+++|++|++++|++++..|..+ .                                        .++.|++
T Consensus       466 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~----------------------------------------~l~~L~~  504 (606)
T 3t6q_A          466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAF-T----------------------------------------SLKMMNH  504 (606)
T ss_dssp             ECSSCGGGGCTTCCEEECTTSCCCEECTTTT-T----------------------------------------TCTTCCE
T ss_pred             cccchhhccCCCccEEECCCCccCccChhhh-c----------------------------------------cccCCCE
Confidence            2333345678899999999999887666432 1                                        1577899


Q ss_pred             EEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCC
Q 041976          764 IDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIP  824 (901)
Q Consensus       764 L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p  824 (901)
                      |+|++|++++.+|..+.++++| +|+|++|++++.+|..|+.+++|+.|++++|++.+..+
T Consensus       505 L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             EECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             EECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            9999999999999999999999 99999999999999999999999999999999987544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.8e-53  Score=503.03  Aligned_cols=521  Identities=17%  Similarity=0.196  Sum_probs=359.8

Q ss_pred             CCHHHHHHHHHhhhcCcCCCCCccccccCCCcCCCCCCCCCCcCc---cceeecCCCCeEEEEEcCCCCCCCCCCCCccc
Q 041976           27 CPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKDTNCCSW---DGVTCDMATGNVISLDLSCSWLHGNIPTNTSL  103 (901)
Q Consensus        27 ~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c~w---~gv~c~~~~~~v~~l~L~~~~~~g~~~~~~~l  103 (901)
                      ....|++||.+||+++..+.-.  ..+.+++..++|..+++||.|   .||+|+.. |||++|+|+++++.|.+|+  ++
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~--~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~--~l  101 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWS--QQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPD--AI  101 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCC--CCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECG--GG
T ss_pred             hHHHHHHHHHHHHHHcCCCCcc--cCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCCh--HH
Confidence            4457999999999998654210  122356677899988999999   99999864 9999999999999999998  99


Q ss_pred             ccCccCceEeCCCCCCC------C-----CcCCccccCCCCCceeeCCCCcCCCCCCccccccccccc--chh--hcc-c
Q 041976          104 FHLLHLQTLNLSHNDFD------Y-----SEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTV--VLD--SLK-N  167 (901)
Q Consensus       104 ~~l~~L~~L~Ls~n~~~------~-----~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~--~~~--~~~-~  167 (901)
                      +++++|++|+|++|.+.      +     ..+|...  +.+|+ ++++++.+.+.+|..++.+.....  .+.  .+. .
T Consensus       102 ~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~  178 (636)
T 4eco_A          102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS  178 (636)
T ss_dssp             GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCC
T ss_pred             hcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccc
Confidence            99999999999999752      1     0244433  56777 888888888888877764300000  000  000 0


Q ss_pred             CCCCccEEEcC--CCcCCCCCccccCCCCCCCEEeCCCCCCCCcc-CCCCCCCCCcceeecCCCCC-ccCCcccc--CCC
Q 041976          168 LSSSLTSLSLS--DCILQGNFPINIFHLPNPQMIRLSQNPSLAGK-FPANNWTSPIEYLDVSETSF-SELPDSIG--NLK  241 (901)
Q Consensus       168 l~~~L~~L~Ls--~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~-~~~~~~~~~L~~L~Ls~~~l-~~lp~~l~--~l~  241 (901)
                      ....++.+.+.  +|.+++ +|..++++++|++|+|++| .++|. ++. .+.+.      +.... ..+|+.++  +++
T Consensus       179 ~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~-~~~~~------~~~~~~~~ip~~l~~~~l~  249 (636)
T 4eco_A          179 SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNS-PFVAENICE-AWENE------NSEYAQQYKTEDLKWDNLK  249 (636)
T ss_dssp             CCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESC-CCCGGGBSS-SCSCT------TSHHHHHHTTSCCCGGGCT
T ss_pred             cccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCC-ccccccccc-ccccc------ccchhcccCchhhhhcccC
Confidence            00122222222  356666 6777777777777777777 56553 110 00000      00000 01668888  899


Q ss_pred             CcCEEECCCCCCccCCCccccCCCCCCEEECCCCc-CCC-CCCccccCC------CCCCEEEccCCcCcccCC--CCCCC
Q 041976          242 LLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNN-FSG-HIPSSLSNL------VQLTYLDLSSNSFFGEIP--DIFNL  311 (901)
Q Consensus       242 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~~L~Ls~n~l~~~~~--~~~~l  311 (901)
                      +|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+      ++|++|++++|+++..++  .+.++
T Consensus       250 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l  329 (636)
T 4eco_A          250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM  329 (636)
T ss_dssp             TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTC
T ss_pred             CCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccC
Confidence            99999999999888899889999999999999998 887 788887776      889999999999884333  37888


Q ss_pred             CCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCC-CcEEEccCCccccccCCC---CCCCCCEE
Q 041976          312 TQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPL-LEYVRLSDNQLSGHIDEF---PSKSLQNI  387 (901)
Q Consensus       312 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~---~~~~L~~L  387 (901)
                      ++|++|++++|.++|.+| .++.+++|++|++++|.++ .+|..+..+++ |++|++++|.++......   .+++|+.|
T Consensus       330 ~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L  407 (636)
T 4eco_A          330 KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAI  407 (636)
T ss_dssp             TTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEE
T ss_pred             CCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEE
Confidence            999999999999988888 8888899999999999988 77888888888 999999999888433322   23479999


Q ss_pred             EccCccCCCCCchhhh-------cccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCC------C
Q 041976          388 YLSNNRLQGSIPSSIF-------ELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDS------P  454 (901)
Q Consensus       388 ~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~------~  454 (901)
                      ++++|.+++.+|..+.       .+++|++|++++|.++++ +...+..+++|++|++++|.++......+..      .
T Consensus       408 ~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~  486 (636)
T 4eco_A          408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF-PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN  486 (636)
T ss_dssp             ECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSC-CTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTT
T ss_pred             ECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcC-CHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccc
Confidence            9999999988888887       778999999999999965 4466777899999999999887333222110      1


Q ss_pred             CCCccEEecCCcCCCCCChhhc--cCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceee
Q 041976          455 FPKFSYLSLSACNISAFPRFLR--TQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLD  532 (901)
Q Consensus       455 ~~~L~~L~l~~~~l~~lp~~l~--~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~  532 (901)
                      +++|++|++++|+++.+|..+.  .+++|++|++++|++++ +|..+  ..+++|+.|++++|.                
T Consensus       487 l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~--~~l~~L~~L~Ls~N~----------------  547 (636)
T 4eco_A          487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQP--LNSSTLKGFGIRNQR----------------  547 (636)
T ss_dssp             GGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGG--GGCSSCCEEECCSCB----------------
T ss_pred             cCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhh--hcCCCCCEEECCCCc----------------
Confidence            1267777777777777776665  66777777777777765 55555  344444444444432                


Q ss_pred             ccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccc
Q 041976          533 LRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNG  610 (901)
Q Consensus       533 l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~  610 (901)
                                          ++++|++.+.+|..+..+++|++|++++|.+ +.+|..+.   ++|+.|++++|++..
T Consensus       548 --------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~---~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          548 --------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT---PNISVLDIKDNPNIS  601 (636)
T ss_dssp             --------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC---TTCCEEECCSCTTCE
T ss_pred             --------------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh---CcCCEEECcCCCCcc
Confidence                                2344555556666666666666666666666 35555433   356666666665543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.1e-51  Score=485.01  Aligned_cols=536  Identities=21%  Similarity=0.173  Sum_probs=363.8

Q ss_pred             ceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCc
Q 041976          221 EYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNS  300 (901)
Q Consensus       221 ~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  300 (901)
                      +++++++++++.+|..+.  +++++|++++|.+.+..+..|.++++|++|++++|.+++..|..|+++++|++|++++|.
T Consensus        14 ~~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~   91 (606)
T 3vq2_A           14 ITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP   91 (606)
T ss_dssp             TEEECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             CceEccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence            466777777777776654  677777777777777666677777777888877777777777777777778888887777


Q ss_pred             CcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcc-cCChhhcCCCCCcEEEccCCccccccCC
Q 041976          301 FFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSG-TIPSWLFSLPLLEYVRLSDNQLSGHIDE  378 (901)
Q Consensus       301 l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~  378 (901)
                      +++..|. +.++++|++|++++|.+.+..+..++++++|++|++++|.+++ .+|..++++++|++|++++|++++..+.
T Consensus        92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~  171 (606)
T 3vq2_A           92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN  171 (606)
T ss_dssp             CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred             ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence            7776665 7777778888888777776666777777888888888877765 4577777788888888888777765544


Q ss_pred             C--CCCC----CCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccC
Q 041976          379 F--PSKS----LQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKID  452 (901)
Q Consensus       379 ~--~~~~----L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  452 (901)
                      .  .+.+    ++.+++++|.+++..+..+... +|+.|++++|.+.+...+..+++++.|+.+++..+.+........ 
T Consensus       172 ~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~-  249 (606)
T 3vq2_A          172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI-  249 (606)
T ss_dssp             TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC-
T ss_pred             hhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc-
Confidence            3  2222    4578888888775555544444 788888888888755555778888888888876554432211100 


Q ss_pred             CCCCCccEEecCCcCCCCCChhhccCCCCCEEeC-CCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCcee
Q 041976          453 SPFPKFSYLSLSACNISAFPRFLRTQDELSYLDL-SENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYL  531 (901)
Q Consensus       453 ~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~l-s~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L  531 (901)
                              +  ..    ..+..+..+ .++.+++ ..+.+.+..|. +  ..+++|+.+++++|.++.++.  +.     
T Consensus       250 --------~--~~----~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~--~~l~~L~~L~l~~~~~~~l~~--l~-----  304 (606)
T 3vq2_A          250 --------F--EP----SIMEGLCDV-TIDEFRLTYTNDFSDDIVK-F--HCLANVSAMSLAGVSIKYLED--VP-----  304 (606)
T ss_dssp             --------C--CG----GGGTTGGGS-EEEEEEECCCTTCCGGGGS-C--GGGTTCSEEEEESCCCCCCCC--CC-----
T ss_pred             --------c--Ch----HHhhhhhhc-cHhheeccccccccccccc-c--ccCCCCCEEEecCccchhhhh--cc-----
Confidence                    0  00    001112222 3556666 55566666655 3  455666777776666655541  11     


Q ss_pred             eccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCccccc
Q 041976          532 DLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGS  611 (901)
Q Consensus       532 ~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~  611 (901)
                                   ..++|++|++++|.+ +.+| .+ .+++|++|++++|...+.+  .+..++ +|++|++++|.+++.
T Consensus       305 -------------~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~-~L~~L~ls~n~l~~~  365 (606)
T 3vq2_A          305 -------------KHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALP-SLSYLDLSRNALSFS  365 (606)
T ss_dssp             -------------TTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCT-TCCEEECCSSCEEEE
T ss_pred             -------------ccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCC-CCCEEECcCCccCCC
Confidence                         124555555666655 3444 33 6666666666666544333  233443 666777776666654


Q ss_pred             --CCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCcc-ccccCCCCCcEEEccCCcCcccCCCCC
Q 041976          612 --IPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFP-YWLGNLPELQVLVLRSNKFHGSVREFE  688 (901)
Q Consensus       612 --~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~  688 (901)
                        .|..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+..| ..+..+++|++|++++|++.+..+...
T Consensus       366 ~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  444 (606)
T 3vq2_A          366 GCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF  444 (606)
T ss_dssp             EECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred             cchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh
Confidence              25566666677777777776664 34566667777777777777766665 556667777777777777666555433


Q ss_pred             CCCCCCCCcEEEcCCCccccC-CcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEcc
Q 041976          689 PKESFPKLRILDLSINNFSGY-LPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFS  767 (901)
Q Consensus       689 ~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls  767 (901)
                        ..+++|++|++++|.+.+. +|..+                                         ..+++|++|+++
T Consensus       445 --~~l~~L~~L~l~~n~l~~~~~~~~~-----------------------------------------~~l~~L~~L~Ls  481 (606)
T 3vq2_A          445 --LGLTSLNTLKMAGNSFKDNTLSNVF-----------------------------------------ANTTNLTFLDLS  481 (606)
T ss_dssp             --TTCTTCCEEECTTCEEGGGEECSCC-----------------------------------------TTCTTCCEEECT
T ss_pred             --cCCCCCCEEECCCCcCCCcchHHhh-----------------------------------------ccCCCCCEEECC
Confidence              5667777777777777652 33211                                         115678888888


Q ss_pred             ccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCC-CCCeeeCCCCcCccC
Q 041976          768 SNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLT-SLSVLNLSHNRLDGP  846 (901)
Q Consensus       768 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~  846 (901)
                      +|++++.+|..|+++++|++|+|++|++++.+|..|+++++|++|||++|+++ .+|..+..++ +|++|++++|++.+.
T Consensus       482 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~  560 (606)
T 3vq2_A          482 KCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACI  560 (606)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred             CCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence            88888888888999999999999999999999999999999999999999998 5666788886 599999999999876


Q ss_pred             CCC
Q 041976          847 IPH  849 (901)
Q Consensus       847 iP~  849 (901)
                      .|.
T Consensus       561 c~~  563 (606)
T 3vq2_A          561 CEH  563 (606)
T ss_dssp             STT
T ss_pred             Ccc
Confidence            553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=7.6e-50  Score=473.13  Aligned_cols=523  Identities=23%  Similarity=0.199  Sum_probs=263.6

Q ss_pred             ccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCC
Q 041976          107 LHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNF  186 (901)
Q Consensus       107 ~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~  186 (901)
                      +++++|+|++|.+++. .+..|+++++|++|+|++|.+.+..|..++++              ++|++|++++|.+++..
T Consensus        32 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l--------------~~L~~L~Ls~n~l~~~~   96 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGL--------------HHLSNLILTGNPIQSFS   96 (606)
T ss_dssp             TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTC--------------TTCCEEECTTCCCCCCC
T ss_pred             CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhch--------------hhcCEeECCCCcccccC
Confidence            4555555555555543 33345555555555555555554444444444              44555555554444444


Q ss_pred             ccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCcc-CCCccccCCC
Q 041976          187 PINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVG-PVPASLGNLT  265 (901)
Q Consensus       187 p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~-~~p~~l~~l~  265 (901)
                      |..++++++|++|++++| .+.+..+                      ..++++++|++|++++|.+.+ .+|..+++++
T Consensus        97 p~~~~~l~~L~~L~L~~n-~l~~~~~----------------------~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~  153 (606)
T 3vq2_A           97 PGSFSGLTSLENLVAVET-KLASLES----------------------FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT  153 (606)
T ss_dssp             TTSSTTCTTCCEEECTTS-CCCCSSS----------------------SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT
T ss_pred             hhhcCCcccCCEEEccCC-ccccccc----------------------cccCCCCCCCEEeCCCCcccceechHhHhhcC
Confidence            444444444444444444 2222211                      334555555555555555443 3344455555


Q ss_pred             CCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcC
Q 041976          266 QLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNN  345 (901)
Q Consensus       266 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  345 (901)
                      +|++|++++|.+++..|..++.+++|+.                   .+++|++++|.+++..+..+... +|++|++++
T Consensus       154 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~-------------------~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~  213 (606)
T 3vq2_A          154 NLVHVDLSYNYIQTITVNDLQFLRENPQ-------------------VNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRG  213 (606)
T ss_dssp             TCCEEECCSSCCCEECTTTTHHHHHCTT-------------------CCCEEECTTCCCCEECTTTTTTC-EEEEEEEES
T ss_pred             CCCEEEccCCcceecChhhhhhhhcccc-------------------ccceeeccCCCcceeCcccccCc-eeeeeeccC
Confidence            5555555555544444444433333220                   02245555555543333333322 566666666


Q ss_pred             CcCc-ccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceec-ccCcCCCccc
Q 041976          346 NSFS-GTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQL-DSNNFSGIAE  423 (901)
Q Consensus       346 n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L-~~n~l~~~~~  423 (901)
                      |.+. +..|..+..++.|+.+++..+.+.+...      +..       +....+..+..+ .++.+++ ..+.+.+..+
T Consensus       214 n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~------l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~  279 (606)
T 3vq2_A          214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN------LEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIV  279 (606)
T ss_dssp             CCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC------CSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGG
T ss_pred             CccchhHHHHHhccccccccccccccccccCCc------ccc-------cChHHhhhhhhc-cHhheecccccccccccc
Confidence            6554 3455566666666666665443332110      000       001111122222 3445555 4455555544


Q ss_pred             hhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcC
Q 041976          424 PYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIG  503 (901)
Q Consensus       424 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~  503 (901)
                       . +..+++|+.|++++|.+....   ....+++|++|++++|.+..+|.+  .+++|++|++++|+..+..+  +    
T Consensus       280 -~-~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l~~lp~~--~l~~L~~L~l~~n~~~~~~~--~----  346 (606)
T 3vq2_A          280 -K-FHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFK--K----  346 (606)
T ss_dssp             -S-CGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCCSSCCCC--CCSSCCEEEEESCSSCEECC--C----
T ss_pred             -c-cccCCCCCEEEecCccchhhh---hccccccCCEEEcccccCcccccC--CCCccceeeccCCcCccchh--h----
Confidence             2 566666666666666554322   122334444444444444444422  44444444444443221110  0    


Q ss_pred             CCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCccccc--cccccccCCCCCEEECCCC
Q 041976          504 KDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGE--IIHSICDIIALDVLDLSNN  581 (901)
Q Consensus       504 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~n  581 (901)
                                                              ..+++|++|++++|.+++.  .+..+..+++|++|++++|
T Consensus       347 ----------------------------------------~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n  386 (606)
T 3vq2_A          347 ----------------------------------------VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN  386 (606)
T ss_dssp             ----------------------------------------CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC
T ss_pred             ----------------------------------------ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC
Confidence                                                    0123344444444444433  2344445555555555555


Q ss_pred             cCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCC-ccccCCCcccEEeCCCCcCccCc
Q 041976          582 RLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIP-QSLVNCTKVEVLDIGNIKINDAF  660 (901)
Q Consensus       582 ~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~  660 (901)
                      .++ .+|.                         .|..+++|++|++++|++.+..| ..+..+++|++|++++|++.+..
T Consensus       387 ~l~-~~~~-------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  440 (606)
T 3vq2_A          387 GAI-IMSA-------------------------NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF  440 (606)
T ss_dssp             SEE-EECC-------------------------CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC
T ss_pred             ccc-cchh-------------------------hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc
Confidence            544 2333                         44444444444444444444443 34444445555555555554444


Q ss_pred             cccccCCCCCcEEEccCCcCccc-CCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccce
Q 041976          661 PYWLGNLPELQVLVLRSNKFHGS-VREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYY  739 (901)
Q Consensus       661 ~~~l~~l~~L~~L~L~~n~~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~  739 (901)
                      |..+.++++|++|++++|++.+. ++...  ..+++|++|++++|++++..|..+ .                       
T Consensus       441 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~-~-----------------------  494 (606)
T 3vq2_A          441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVF--ANTTNLTFLDLSKCQLEQISWGVF-D-----------------------  494 (606)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTTT-T-----------------------
T ss_pred             hhhhcCCCCCCEEECCCCcCCCcchHHhh--ccCCCCCEEECCCCcCCccChhhh-c-----------------------
Confidence            44455555555555555554442 22222  445566666666666655444321 0                       


Q ss_pred             eceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCC-CCCEEeCCCCc
Q 041976          740 QDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLA-KLESLDLSSNN  818 (901)
Q Consensus       740 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~-~L~~L~Ls~N~  818 (901)
                                       .+++|++|++++|++++.+|..|+++++|++|+|++|+++ .+|..+..++ +|+.|++++|+
T Consensus       495 -----------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          495 -----------------TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             -----------------TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCC
T ss_pred             -----------------ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCC
Confidence                             1466788888888888888889999999999999999999 5666688887 69999999999


Q ss_pred             cCCCCC
Q 041976          819 VAGKIP  824 (901)
Q Consensus       819 l~~~~p  824 (901)
                      +.+..+
T Consensus       557 ~~c~c~  562 (606)
T 3vq2_A          557 VACICE  562 (606)
T ss_dssp             CCCSST
T ss_pred             cccCCc
Confidence            987544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2e-50  Score=483.20  Aligned_cols=518  Identities=17%  Similarity=0.195  Sum_probs=284.0

Q ss_pred             CCCCCHHHHHHHHHhhhcCcCCCCCccccccCCCcCCCCCCC-----CCC--cCc------------cceeecCCCCeEE
Q 041976           24 AKHCPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKD-----TNC--CSW------------DGVTCDMATGNVI   84 (901)
Q Consensus        24 ~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~l~~w~~~-----~~~--c~w------------~gv~c~~~~~~v~   84 (901)
                      +.++..+|++||++||+++.++               +|..+     .+|  |.|            .||+|+. .+||+
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~~~---------------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~  326 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALDGK---------------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVT  326 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTGG---------------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEE
T ss_pred             ccccchHHHHHHHHHHHHcCCC---------------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEE
Confidence            4456678999999999999532               46432     244  999            9999986 69999


Q ss_pred             EEEcCCCCCCCCCCCCcccccCccCceEeC-CCCCCCCCcCCccccCC----C-----CCce------eeC-CCCcCCCC
Q 041976           85 SLDLSCSWLHGNIPTNTSLFHLLHLQTLNL-SHNDFDYSEISSGFSRF----R-----NLTH------FSL-SDSNINCK  147 (901)
Q Consensus        85 ~l~L~~~~~~g~~~~~~~l~~l~~L~~L~L-s~n~~~~~~~~~~l~~l----~-----~L~~------L~L-s~~~~~~~  147 (901)
                      +|+|+++++.|.+|+  ++++|++|++|+| ++|.+.+. .|-.....    .     .++.      ++. ....+.+.
T Consensus       327 ~L~Ls~~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l  403 (876)
T 4ecn_A          327 GLSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL  403 (876)
T ss_dssp             EEECTTTCCEEEECG--GGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred             EEECccCCCCCcCch--HHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence            999999999999998  9999999999999 88876654 11110000    0     0000      000 00000000


Q ss_pred             CCcccccccccccchhhcc-cCCCCccEEEcCC--CcCCCCCccccCCCCCCCEEeCCCCCCCCc---------------
Q 041976          148 IPYEISFLKMSTVVLDSLK-NLSSSLTSLSLSD--CILQGNFPINIFHLPNPQMIRLSQNPSLAG---------------  209 (901)
Q Consensus       148 ~p~~l~~l~~~~~~~~~~~-~l~~~L~~L~Ls~--~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~---------------  209 (901)
                      ++..+..-    .....+. .-...++.+.+..  |.+++ +|..++++++|++|+|++| .++|               
T Consensus       404 ~~~~l~~~----~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~  477 (876)
T 4ecn_A          404 LQDAINRN----PEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYA  477 (876)
T ss_dssp             HHHHHHTC----TTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHH
T ss_pred             HHHHhhhC----ccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccc
Confidence            00000000    0000000 0002233333332  55555 5666666666666666666 5555               


Q ss_pred             --cCCC-CC--CCCCcceeecCCCCCc-cCCccccCCCCcCEEECCCCC-Ccc-CCCccccCCC-------CCCEEECCC
Q 041976          210 --KFPA-NN--WTSPIEYLDVSETSFS-ELPDSIGNLKLLGRLMLGYSQ-FVG-PVPASLGNLT-------QLTLLHLMH  274 (901)
Q Consensus       210 --~~~~-~~--~~~~L~~L~Ls~~~l~-~lp~~l~~l~~L~~L~L~~n~-~~~-~~p~~l~~l~-------~L~~L~L~~  274 (901)
                        .+|. +.  .+++|++|+|++|.+. .+|..++++++|++|++++|+ +++ .+|..+++++       +|++|++++
T Consensus       478 ~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~  557 (876)
T 4ecn_A          478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY  557 (876)
T ss_dssp             HHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred             cccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence              2332 12  3333333333333322 334555556666666666655 554 4554443333       566666666


Q ss_pred             CcCCCCCCc--cccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcC-CcEEECcCCcCccc
Q 041976          275 NNFSGHIPS--SLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQN-LVLIRLNNNSFSGT  351 (901)
Q Consensus       275 n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~  351 (901)
                      |.++ .+|.  .++++++|++|++++|.++ .+|.+..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .
T Consensus       558 N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~  633 (876)
T 4ecn_A          558 NNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y  633 (876)
T ss_dssp             SCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred             CcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-c
Confidence            6555 5555  5555666666666666555 4445555555666666655555 45555555555 566666555555 4


Q ss_pred             CChhhcCCCC--CcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhh--cccccCceecccCcCCCccchhhh
Q 041976          352 IPSWLFSLPL--LEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIF--ELVNLTDLQLDSNNFSGIAEPYMF  427 (901)
Q Consensus       352 ~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~l  427 (901)
                      +|..+..++.  |+.|++++|.+.+.++...                   ..+.  .+++|+.|++++|.++.+ +...+
T Consensus       634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~-------------------~~l~~~~~~~L~~L~Ls~N~L~~l-p~~~~  693 (876)
T 4ecn_A          634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS-------------------CSMDDYKGINASTVTLSYNEIQKF-PTELF  693 (876)
T ss_dssp             CCSCCCTTCSSCEEEEECCSSCTTTTSSSCS-------------------SCTTTCCCCCEEEEECCSSCCCSC-CHHHH
T ss_pred             CchhhhccccCCCCEEECcCCcCCCccccch-------------------hhhccccCCCcCEEEccCCcCCcc-CHHHH
Confidence            4544444332  5555555555544333210                   1111  223555666666665543 32444


Q ss_pred             hhcCCCcEEEccCCccccccccccC------CCCCCccEEecCCcCCCCCChhhc--cCCCCCEEeCCCCcccccCChhh
Q 041976          428 AKLIKLKYLYLSHNSLSLGNTFKID------SPFPKFSYLSLSACNISAFPRFLR--TQDELSYLDLSENKIDGQIPSWI  499 (901)
Q Consensus       428 ~~l~~L~~L~L~~n~l~~~~~~~~~------~~~~~L~~L~l~~~~l~~lp~~l~--~~~~L~~L~ls~n~l~~~~p~~~  499 (901)
                      ..+++|+.|++++|.++......+.      ..+++|+.|++++|+++.+|..+.  .+++|+.|++++|++.+ +|..+
T Consensus       694 ~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l  772 (876)
T 4ecn_A          694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP  772 (876)
T ss_dssp             HTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGG
T ss_pred             ccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhh
Confidence            4556666666666655522211111      112367777777777777776665  77777777777777776 55555


Q ss_pred             hhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECC
Q 041976          500 SEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLS  579 (901)
Q Consensus       500 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  579 (901)
                        ..+++|+.|++++|.                                    ++++|++.+.+|..+.++++|++|+++
T Consensus       773 --~~L~~L~~L~Ls~N~------------------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls  814 (876)
T 4ecn_A          773 --LNSSQLKAFGIRHQR------------------------------------DAEGNRILRQWPTGITTCPSLIQLQIG  814 (876)
T ss_dssp             --GGCTTCCEEECCCCB------------------------------------CTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred             --hcCCCCCEEECCCCC------------------------------------CcccccccccChHHHhcCCCCCEEECC
Confidence              344555555554442                                    334566666667777777777777777


Q ss_pred             CCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCccc
Q 041976          580 NNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELG  633 (901)
Q Consensus       580 ~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  633 (901)
                      +|.+ +.+|..+.   ++|+.|+|++|++....+..|.....+..+.|.+|+..
T Consensus       815 ~N~L-~~Ip~~l~---~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          815 SNDI-RKVDEKLT---PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             SSCC-CBCCSCCC---SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred             CCCC-CccCHhhc---CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence            7777 46666543   36777777777766555555554444555555555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.2e-49  Score=482.96  Aligned_cols=545  Identities=21%  Similarity=0.221  Sum_probs=346.0

Q ss_pred             ceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCC-CccccCCCCCCEEEccCC
Q 041976          221 EYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHI-PSSLSNLVQLTYLDLSSN  299 (901)
Q Consensus       221 ~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n  299 (901)
                      +..+.++++++.+|.   ..+++++|+|++|.+.+..|..|.++++|++|++++|...+.+ |..|+++++|++|+|++|
T Consensus         7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            456777777888876   3467888888888887777777888888888888877554444 667777777777777777


Q ss_pred             cCcccCCC-CCCCCCCCEEECCCCCCCCCCCcc--ccCCcCCcEEECcCCcCcccCC-hhhcCCCCCcEEEccCCccccc
Q 041976          300 SFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSH--GSRLQNLVLIRLNNNSFSGTIP-SWLFSLPLLEYVRLSDNQLSGH  375 (901)
Q Consensus       300 ~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~  375 (901)
                      .+.+..|. +.++++|++|++++|.+++.+|..  ++.+++|++|++++|.+++..+ ..++++++|++|++++|.+.  
T Consensus        84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~--  161 (844)
T 3j0a_A           84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF--  161 (844)
T ss_dssp             CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC--
T ss_pred             cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC--
Confidence            77776665 667777777777777776655443  6667777777777776665443 35566666665555555443  


Q ss_pred             cCCCCCCCCCEEEccCccCCCCCchhhhcc--cccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCC
Q 041976          376 IDEFPSKSLQNIYLSNNRLQGSIPSSIFEL--VNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDS  453 (901)
Q Consensus       376 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  453 (901)
                                          +..+..+..+  ++|+.|+++.|.+.+..+ ..++.+++                     
T Consensus       162 --------------------~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~-~~~~~~~~---------------------  199 (844)
T 3j0a_A          162 --------------------LVCEHELEPLQGKTLSFFSLAANSLYSRVS-VDWGKCMN---------------------  199 (844)
T ss_dssp             --------------------CCCSGGGHHHHHCSSCCCEECCSBSCCCCC-CCCCSSSC---------------------
T ss_pred             --------------------eeCHHHcccccCCccceEECCCCccccccc-cchhhcCC---------------------
Confidence                                3444455554  566666666666655433 11111111                     


Q ss_pred             CCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhh-cCCCCccEEEcCCCccCCcccCCCCCCceee
Q 041976          454 PFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISE-IGKDSLSYVNLSHNFITKMKQIPWKNLGYLD  532 (901)
Q Consensus       454 ~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~-~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~  532 (901)
                                          .+.. ..|+.|++++|.+.+..+..+.. .....+..+.++.+.+....  .+.++..  
T Consensus       200 --------------------~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~--~~~~l~~--  254 (844)
T 3j0a_A          200 --------------------PFRN-MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF--GFHNIKD--  254 (844)
T ss_dssp             --------------------TTTT-CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS--SCSSSTT--
T ss_pred             --------------------cccc-CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc--cccccCC--
Confidence                                0000 12344444444333333333211 11123334443322111000  0000000  


Q ss_pred             ccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccC
Q 041976          533 LRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSI  612 (901)
Q Consensus       533 l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~  612 (901)
                      ...+.+.+   ..+++++.|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+. +|++|++++|.+++..
T Consensus       255 ~~~~~f~~---l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~  330 (844)
T 3j0a_A          255 PDQNTFAG---LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD-NLQVLNLSYNLLGELY  330 (844)
T ss_dssp             GGGTTTTT---TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS-SCCEEEEESCCCSCCC
T ss_pred             CChhhhhc---cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC-CCCEEECCCCCCCccC
Confidence            00000000   1135677777777777777777777777777777777777766666666665 7777777777777777


Q ss_pred             CcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCC
Q 041976          613 PGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKES  692 (901)
Q Consensus       613 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~  692 (901)
                      |..|..+++|++|++++|++.+..+..|..+++|++|++++|.+++.     ..+++|+.|++++|++.. ++     ..
T Consensus       331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~-----~~  399 (844)
T 3j0a_A          331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LP-----KI  399 (844)
T ss_dssp             SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC-CC-----CC
T ss_pred             HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCccc-cc-----cc
Confidence            77777777777777777777777777777777777777777777643     236777777777777762 22     12


Q ss_pred             CCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccc
Q 041976          693 FPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFD  772 (901)
Q Consensus       693 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  772 (901)
                      ..+++.|++++|++.+.-...++..+++|+.+++++|.+..+......               ..+++|+.|++++|.++
T Consensus       400 ~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------------~~~~~L~~L~Ls~N~l~  464 (844)
T 3j0a_A          400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP---------------SENPSLEQLFLGENMLQ  464 (844)
T ss_dssp             CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS---------------CSCTTCCBCEEESCCCS
T ss_pred             ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc---------------ccCCccccccCCCCccc
Confidence            456777777777777654444555677777777777766544321100               11467788888888876


Q ss_pred             -----cccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCC
Q 041976          773 -----GEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPI  847 (901)
Q Consensus       773 -----~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i  847 (901)
                           +..+..|.++++|++|+|++|++++.+|..|.++++|+.|+|++|++++..|..+.  ++|++|+|++|++++.+
T Consensus       465 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~  542 (844)
T 3j0a_A          465 LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPN  542 (844)
T ss_dssp             SSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCC
T ss_pred             cccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCC
Confidence                 44456677888888888888888888888888888888888888888877776665  78888888888888877


Q ss_pred             CCCCCCCCcccccccCCcCCCCCC
Q 041976          848 PHGPQFNTFQEDSYIGNLGLCGFP  871 (901)
Q Consensus       848 P~~~~~~~~~~~~~~~n~~lcg~~  871 (901)
                      |..  +..+....+.|||..|+|+
T Consensus       543 ~~~--~~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          543 PDV--FVSLSVLDITHNKFICECE  564 (844)
T ss_dssp             SCC--CSSCCEEEEEEECCCCSSS
T ss_pred             hhH--hCCcCEEEecCCCcccccc
Confidence            754  4566667777888777654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-48  Score=476.08  Aligned_cols=524  Identities=21%  Similarity=0.189  Sum_probs=364.9

Q ss_pred             cCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCC-CcccccccccccchhhcccCCCCccEEEcCCCcCC
Q 041976          105 HLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKI-PYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQ  183 (901)
Q Consensus       105 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~-p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~  183 (901)
                      -.++|++|||++|.+++. .|..|+++++|++|+|++|...+.+ |..++++              ++|++|+|++|.+.
T Consensus        22 lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L--------------~~L~~L~Ls~N~l~   86 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNL--------------PNLRILDLGSSKIY   86 (844)
T ss_dssp             SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSC--------------TTCCEEECTTCCCC
T ss_pred             CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCC--------------CCCCEEECCCCcCc
Confidence            346888888888888775 5777888888888888888766666 6667777              88888888888888


Q ss_pred             CCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCC-cccc
Q 041976          184 GNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVP-ASLG  262 (901)
Q Consensus       184 ~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p-~~l~  262 (901)
                      +..|..++++++|++|+|++| .+++.+|.                    +..++++++|++|++++|.+.+..+ ..++
T Consensus        87 ~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~--------------------~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~  145 (844)
T 3j0a_A           87 FLHPDAFQGLFHLFELRLYFC-GLSDAVLK--------------------DGYFRNLKALTRLDLSKNQIRSLYLHPSFG  145 (844)
T ss_dssp             EECTTSSCSCSSCCCEECTTC-CCSSCCST--------------------TCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred             ccCHhHccCCcccCEeeCcCC-CCCccccc--------------------CccccccCCCCEEECCCCcccccccchhHh
Confidence            777888888888888888888 66655441                    0237888889999999988887654 5688


Q ss_pred             CCCCCCEEECCCCcCCCCCCccccCC--CCCCEEEccCCcCcccCCC-CCCCCC------CCEEECCCCCCCCCCCcccc
Q 041976          263 NLTQLTLLHLMHNNFSGHIPSSLSNL--VQLTYLDLSSNSFFGEIPD-IFNLTQ------VSFFDLSNNQLAGPIPSHGS  333 (901)
Q Consensus       263 ~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~~~-~~~l~~------L~~L~l~~n~l~~~~~~~~~  333 (901)
                      ++++|++|++++|.+++..+..+..+  ++|++|++++|.+.+..+. +..+++      |++|++++|.+.+..+..+.
T Consensus       146 ~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  225 (844)
T 3j0a_A          146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS  225 (844)
T ss_dssp             TCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGG
T ss_pred             hCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHH
Confidence            88889999998888888888888777  7888888888888876654 444443      77777777777766665554


Q ss_pred             CC---cCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccC----CCCCCCCCEEEccCccCCCCCchhhhccc
Q 041976          334 RL---QNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHID----EFPSKSLQNIYLSNNRLQGSIPSSIFELV  406 (901)
Q Consensus       334 ~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  406 (901)
                      ..   .+++.+.++.+.+....               ..+.+.+...    ....++|+.|++++|.+.+..+..+..++
T Consensus       226 ~~l~~~~l~~L~l~~~~~~~~~---------------~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~  290 (844)
T 3j0a_A          226 NAISKSQAFSLILAHHIMGAGF---------------GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK  290 (844)
T ss_dssp             GTSCSCCBSEEECCSSCCBCSS---------------SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCC
T ss_pred             hhcCcccccceecccccccccc---------------cccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCC
Confidence            32   45566665533322110               0111111110    11235677777777777766666777777


Q ss_pred             ccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeC
Q 041976          407 NLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDL  486 (901)
Q Consensus       407 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~l  486 (901)
                      +|+.|++++|.+.+..+ ..|..+++|++|++++|.++....                        ..+..+++|++|++
T Consensus       291 ~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~------------------------~~~~~l~~L~~L~L  345 (844)
T 3j0a_A          291 DLKVLNLAYNKINKIAD-EAFYGLDNLQVLNLSYNLLGELYS------------------------SNFYGLPKVAYIDL  345 (844)
T ss_dssp             CCCEEEEESCCCCEECT-TTTTTCSSCCEEEEESCCCSCCCS------------------------CSCSSCTTCCEEEC
T ss_pred             CCCEEECCCCcCCCCCh-HHhcCCCCCCEEECCCCCCCccCH------------------------HHhcCCCCCCEEEC
Confidence            77777777777776644 566666777777777666653322                        23344444555555


Q ss_pred             CCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCcccccc-cc
Q 041976          487 SENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEI-IH  565 (901)
Q Consensus       487 s~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~-~~  565 (901)
                      ++|.+.+..+..+  ..+++|+.|++++|.++.+..  +++|+.+++++|++. .+|....+++.|++++|.+++.. +.
T Consensus       346 ~~N~i~~~~~~~~--~~l~~L~~L~Ls~N~l~~i~~--~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~  420 (844)
T 3j0a_A          346 QKNHIAIIQDQTF--KFLEKLQTLDLRDNALTTIHF--IPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILY  420 (844)
T ss_dssp             CSCCCCCCCSSCS--CSCCCCCEEEEETCCSCCCSS--CCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHH
T ss_pred             CCCCCCccChhhh--cCCCCCCEEECCCCCCCcccC--CCCcchhccCCCCcc-cccccccccceeecccCccccCchhh
Confidence            5554444444333  334455555555555554433  455666666666665 33444567888888888887643 23


Q ss_pred             ccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCccc-----ccCCcCccCCCccCEEEccCCcccccCCccc
Q 041976          566 SICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLN-----GSIPGTFAESNWLRSLNLNNNELGGAIPQSL  640 (901)
Q Consensus       566 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  640 (901)
                      .+..+++|++|++++|.+++..+.......++|+.|++++|.++     +..+..|..+++|++|+|++|++++..|..|
T Consensus       421 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  500 (844)
T 3j0a_A          421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF  500 (844)
T ss_dssp             HHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSS
T ss_pred             hhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHc
Confidence            45578899999999999886544333222358999999999887     3445678889999999999999998888889


Q ss_pred             cCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHH
Q 041976          641 VNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLE  716 (901)
Q Consensus       641 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  716 (901)
                      ..+++|++|++++|++++..+..+.  ++|++|++++|++++..+..     +.+|+.+++++|++.+..+..++.
T Consensus       501 ~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~-----~~~L~~l~l~~Np~~C~c~~~~f~  569 (844)
T 3j0a_A          501 SHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV-----FVSLSVLDITHNKFICECELSTFI  569 (844)
T ss_dssp             SSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC-----CSSCCEEEEEEECCCCSSSCCSHH
T ss_pred             cchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH-----hCCcCEEEecCCCcccccccHHHH
Confidence            9999999999999999988777665  88999999999998876644     458899999999998876644433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-46  Score=440.15  Aligned_cols=516  Identities=18%  Similarity=0.171  Sum_probs=330.0

Q ss_pred             ceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCc
Q 041976          221 EYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNS  300 (901)
Q Consensus       221 ~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  300 (901)
                      +.++.++.+++.+|..+.  +++++|++++|.+.+..+.+|.++++|++|++++|.+++..+..|+++++|++|++++|.
T Consensus        10 ~~~~c~~~~l~~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~   87 (570)
T 2z63_A           10 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (570)
T ss_dssp             TEEECCSSCCSSCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             cEEEeCCCCccccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence            345555555555555443  356666666666665555566666666666666666665555556666666666666666


Q ss_pred             CcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcc-cCChhhcCCCCCcEEEccCCccccccCC
Q 041976          301 FFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSG-TIPSWLFSLPLLEYVRLSDNQLSGHIDE  378 (901)
Q Consensus       301 l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~  378 (901)
                      +++..+. +.++++|++|++++|.+++..+..++.+++|++|++++|.+++ .+|..++++++|++|++++|.+.+..+.
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~  167 (570)
T 2z63_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (570)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred             CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence            6655544 5566666666666666654444456666666666666666654 2456666666666666666655543322


Q ss_pred             C--CCCCC----CEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccC
Q 041976          379 F--PSKSL----QNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKID  452 (901)
Q Consensus       379 ~--~~~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  452 (901)
                      .  .+++|    +.+++++|.+++..+..+... +|+.|++++|.......+..+..++.++...+....+....     
T Consensus       168 ~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~-----  241 (570)
T 2z63_A          168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG-----  241 (570)
T ss_dssp             GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCS-----
T ss_pred             HccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCch-----
Confidence            1  22333    455666666655555555444 56666666664443333345566666665555433221100     


Q ss_pred             CCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCC-cccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCcee
Q 041976          453 SPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSEN-KIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYL  531 (901)
Q Consensus       453 ~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n-~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L  531 (901)
                          .++.  +....+    ..+..+ .++.++++++ .+.+..|..+  ..+                           
T Consensus       242 ----~l~~--~~~~~~----~~l~~l-~l~~l~l~~~~~~~~~~~~~~--~~l---------------------------  281 (570)
T 2z63_A          242 ----NLEK--FDKSAL----EGLCNL-TIEEFRLAYLDYYLDDIIDLF--NCL---------------------------  281 (570)
T ss_dssp             ----SCEE--CCTTTT----GGGGGS-EEEEEEEEETTEEESCSTTTT--GGG---------------------------
T ss_pred             ----hhhh--cchhhh----cccccc-chhhhhhhcchhhhhhchhhh--cCc---------------------------
Confidence                0000  000000    001111 2344444444 3444444433  222                           


Q ss_pred             eccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCccccc
Q 041976          532 DLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGS  611 (901)
Q Consensus       532 ~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~  611 (901)
                                     ++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|.  ..+. +|+.|++++|.+.+.
T Consensus       282 ---------------~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~-~L~~L~l~~n~~~~~  340 (570)
T 2z63_A          282 ---------------TNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLK-SLKRLTFTSNKGGNA  340 (570)
T ss_dssp             ---------------TTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCS-SCCEEEEESCBSCCB
T ss_pred             ---------------CcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--cccc-ccCEEeCcCCccccc
Confidence                           34455555555555 344455555 7777777777776 5554  2333 777777777777665


Q ss_pred             CCcCccCCCccCEEEccCCcccccC--CccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCC
Q 041976          612 IPGTFAESNWLRSLNLNNNELGGAI--PQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEP  689 (901)
Q Consensus       612 ~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~  689 (901)
                      .+.  ..+++|++|++++|++++..  +..+..+++|++|++++|++.+..+. +..+++|++|++++|.+.+..+. ..
T Consensus       341 ~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~-~~  416 (570)
T 2z63_A          341 FSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEF-SV  416 (570)
T ss_dssp             CCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTS-CT
T ss_pred             ccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccch-hh
Confidence            543  66777888888888777554  56677788888888888887776555 77888888888888887765442 12


Q ss_pred             CCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEcccc
Q 041976          690 KESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSN  769 (901)
Q Consensus       690 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N  769 (901)
                      +..+++|++|++++|.+.+..|..+                                         ..+++|++|++++|
T Consensus       417 ~~~l~~L~~L~l~~n~l~~~~~~~~-----------------------------------------~~l~~L~~L~l~~n  455 (570)
T 2z63_A          417 FLSLRNLIYLDISHTHTRVAFNGIF-----------------------------------------NGLSSLEVLKMAGN  455 (570)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTT-----------------------------------------TTCTTCCEEECTTC
T ss_pred             hhcCCCCCEEeCcCCcccccchhhh-----------------------------------------hcCCcCcEEECcCC
Confidence            3677888888888888877655322                                         11577889999999


Q ss_pred             ccc-cccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCC
Q 041976          770 GFD-GEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIP  848 (901)
Q Consensus       770 ~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP  848 (901)
                      .++ +.+|..++.+++|++|+|++|++++..|..|+++++|++|+|++|++++..|..|..+++|++|++++|++++..|
T Consensus       456 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            987 6788999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CC
Q 041976          849 HG  850 (901)
Q Consensus       849 ~~  850 (901)
                      ..
T Consensus       536 ~~  537 (570)
T 2z63_A          536 RI  537 (570)
T ss_dssp             TT
T ss_pred             ch
Confidence            65

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=7.1e-46  Score=433.72  Aligned_cols=494  Identities=17%  Similarity=0.165  Sum_probs=275.3

Q ss_pred             eeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcC
Q 041976          222 YLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSF  301 (901)
Q Consensus       222 ~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  301 (901)
                      +.+++++.++.+|..+.  ++|++|++++|.+.+..|..+.++++|++|++++|.+++..|..|+.+++|++|++++|.+
T Consensus         9 ~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   86 (549)
T 2z81_A            9 VCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL   86 (549)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             eEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence            35666667777776554  5777777777777766666777777777777777777766666677777777777777777


Q ss_pred             cccCCC-CCCCCCCCEEECCCCCCCC-CCCccccCCcCCcEEECcCCcCcccC-ChhhcCCCCCcEEEccCCccccccCC
Q 041976          302 FGEIPD-IFNLTQVSFFDLSNNQLAG-PIPSHGSRLQNLVLIRLNNNSFSGTI-PSWLFSLPLLEYVRLSDNQLSGHIDE  378 (901)
Q Consensus       302 ~~~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~  378 (901)
                      ++..+. +.++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+ +..+..+++|++|++++|.+.     
T Consensus        87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----  161 (549)
T 2z81_A           87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-----  161 (549)
T ss_dssp             CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-----
T ss_pred             CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc-----
Confidence            666555 6666677777777766664 24555666666666666666632233 245555555555555555444     


Q ss_pred             CCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCc
Q 041976          379 FPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKF  458 (901)
Q Consensus       379 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L  458 (901)
                                       +..|..++.+++|++|+++.|.+... +...+..+++|++|++++|.+++......       
T Consensus       162 -----------------~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------  216 (549)
T 2z81_A          162 -----------------NYQSQSLKSIRDIHHLTLHLSESAFL-LEIFADILSSVRYLELRDTNLARFQFSPL-------  216 (549)
T ss_dssp             -----------------EECTTTTTTCSEEEEEEEECSBSTTH-HHHHHHSTTTBSEEEEESCBCTTCCCCCC-------
T ss_pred             -----------------ccChhhhhccccCceEecccCccccc-chhhHhhcccccEEEccCCcccccccccc-------
Confidence                             44455555566666666666655443 22334456666666666666654321100       


Q ss_pred             cEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhh--cCCCCccEEEcCCCccCCcccCCCCCCceeeccCc
Q 041976          459 SYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISE--IGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSN  536 (901)
Q Consensus       459 ~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~--~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n  536 (901)
                                    .....+++|+.|++++|.+.+..+..+..  .....++.+++++|.+.++......          
T Consensus       217 --------------~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~----------  272 (549)
T 2z81_A          217 --------------PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS----------  272 (549)
T ss_dssp             --------------SSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCC----------
T ss_pred             --------------chhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccccc----------
Confidence                          00112334444444444444333322210  1123333343333333322111000          


Q ss_pred             cccCCCCCCCCCCcEEEccCCccccc-----cccccccCCCCCEEECCCCcCcccCCcchh-cCCCCccEEECCCCcccc
Q 041976          537 LLQGPLPVPPSSLRVLLISNNQFTGE-----IIHSICDIIALDVLDLSNNRLNGTIPECIG-NFSPSLSVLDLRNNRLNG  610 (901)
Q Consensus       537 ~l~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~~~~~L~~L~L~~n~l~~  610 (901)
                        ....+....+++.+++.++.+...     .+..+....+|++|++++|.+. .+|..+. .+. +|++|++++|++++
T Consensus       273 --~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~-~L~~L~Ls~N~l~~  348 (549)
T 2z81_A          273 --ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLK-SLEFLDLSENLMVE  348 (549)
T ss_dssp             --TTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCT-TCCEEECCSSCCCH
T ss_pred             --chhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCc-cccEEEccCCcccc
Confidence              000111233445555554443321     1111222344555555555554 4444432 222 55555555555544


Q ss_pred             cCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCcc--ccccCCCCCcEEEccCCcCcccCCCCC
Q 041976          611 SIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFP--YWLGNLPELQVLVLRSNKFHGSVREFE  688 (901)
Q Consensus       611 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~L~~n~~~~~~~~~~  688 (901)
                      ..|..                     +..+..+++|++|++++|++++..+  ..+..+++|++|++++|++.. +|...
T Consensus       349 ~~~~~---------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~  406 (549)
T 2z81_A          349 EYLKN---------------------SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSC  406 (549)
T ss_dssp             HHHHH---------------------HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCC
T ss_pred             ccccc---------------------hhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhh
Confidence            33210                     1123444444555555554444322  234445555555555555542 22221


Q ss_pred             CCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccc
Q 041976          689 PKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSS  768 (901)
Q Consensus       689 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~  768 (901)
                        ..+++|++|++++|.+++ +|..+                                           ++.|++||+++
T Consensus       407 --~~~~~L~~L~Ls~N~l~~-l~~~~-------------------------------------------~~~L~~L~Ls~  440 (549)
T 2z81_A          407 --QWPEKMRFLNLSSTGIRV-VKTCI-------------------------------------------PQTLEVLDVSN  440 (549)
T ss_dssp             --CCCTTCCEEECTTSCCSC-CCTTS-------------------------------------------CTTCSEEECCS
T ss_pred             --cccccccEEECCCCCccc-ccchh-------------------------------------------cCCceEEECCC
Confidence              345556666666665542 22110                                           24567778888


Q ss_pred             cccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCC
Q 041976          769 NGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIP  848 (901)
Q Consensus       769 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP  848 (901)
                      |++++.+    ..+++|++|+|++|+++ .+|. ...+++|++|||++|++++.+|..+..+++|++|++++|++.+..|
T Consensus       441 N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          441 NNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             SCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            8777653    46889999999999998 5565 4678999999999999999989889999999999999999998877


Q ss_pred             C
Q 041976          849 H  849 (901)
Q Consensus       849 ~  849 (901)
                      .
T Consensus       515 ~  515 (549)
T 2z81_A          515 R  515 (549)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.5e-45  Score=426.48  Aligned_cols=500  Identities=21%  Similarity=0.218  Sum_probs=300.2

Q ss_pred             cCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCc
Q 041976          108 HLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFP  187 (901)
Q Consensus       108 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p  187 (901)
                      ++++|++++|.+++. .+..|.++++|++|+|++|.+.+..|..++++              ++|++|++++|.+++..|
T Consensus        29 ~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l--------------~~L~~L~L~~n~l~~~~~   93 (570)
T 2z63_A           29 STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL--------------SHLSTLILTGNPIQSLAL   93 (570)
T ss_dssp             SCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTC--------------TTCCEEECTTCCCCEECT
T ss_pred             cccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCc--------------hhCCEEeCcCCcCCccCH
Confidence            455555555555543 23345555555555555555544334444444              445555555544444444


Q ss_pred             cccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCc-cccCCCCcCEEECCCCCCcc-CCCccccCCC
Q 041976          188 INIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPD-SIGNLKLLGRLMLGYSQFVG-PVPASLGNLT  265 (901)
Q Consensus       188 ~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~~~~-~~p~~l~~l~  265 (901)
                      ..++++++|++|++++|                        .++.+|. .++++++|++|++++|.+.+ .+|..+++++
T Consensus        94 ~~~~~l~~L~~L~L~~n------------------------~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~  149 (570)
T 2z63_A           94 GAFSGLSSLQKLVAVET------------------------NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT  149 (570)
T ss_dssp             TTTTTCTTCCEEECTTS------------------------CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred             hhhcCcccccccccccc------------------------ccccCCCccccccccccEEecCCCccceecChhhhcccC
Confidence            44444444444444444                        4444433 57777788888888887775 4677777778


Q ss_pred             CCCEEECCCCcCCCCCCccccCCCCC----CEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCC-CCCccccCCcCCcE
Q 041976          266 QLTLLHLMHNNFSGHIPSSLSNLVQL----TYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAG-PIPSHGSRLQNLVL  340 (901)
Q Consensus       266 ~L~~L~L~~n~l~~~~p~~l~~l~~L----~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~  340 (901)
                      +|++|++++|.+++..+..++.+++|    ++|++++|.+.+..+......+|+.|++++|.... .++..+..+++++.
T Consensus       150 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~  229 (570)
T 2z63_A          150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV  229 (570)
T ss_dssp             TCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEE
T ss_pred             CCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccce
Confidence            88888888777776666677776666    67777777777666654333466666666654321 22333444444444


Q ss_pred             EECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCc-cCCCCCchhhhcccccCceecccCcCC
Q 041976          341 IRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNN-RLQGSIPSSIFELVNLTDLQLDSNNFS  419 (901)
Q Consensus       341 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~  419 (901)
                      ..+....+..        ...++.  +....+.+.    ..-.++.++++++ .+.+..|..+..+++|+.|++++|.+.
T Consensus       230 ~~l~~~~~~~--------~~~l~~--~~~~~~~~l----~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  295 (570)
T 2z63_A          230 HRLVLGEFRN--------EGNLEK--FDKSALEGL----CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE  295 (570)
T ss_dssp             EEEEEEECCC--------CSSCEE--CCTTTTGGG----GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC
T ss_pred             eeeccccccC--------chhhhh--cchhhhccc----cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch
Confidence            4333221110        000000  000000000    0012334444444 344444555555555555555555555


Q ss_pred             CccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhh
Q 041976          420 GIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWI  499 (901)
Q Consensus       420 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~  499 (901)
                      +..  ..+..+ +|++|++++|.+                         ..+|.  ..+++|++|++++|.+.+..+.  
T Consensus       296 ~l~--~~~~~~-~L~~L~l~~n~~-------------------------~~l~~--~~l~~L~~L~l~~n~~~~~~~~--  343 (570)
T 2z63_A          296 RVK--DFSYNF-GWQHLELVNCKF-------------------------GQFPT--LKLKSLKRLTFTSNKGGNAFSE--  343 (570)
T ss_dssp             SCC--BCCSCC-CCSEEEEESCBC-------------------------SSCCB--CBCSSCCEEEEESCBSCCBCCC--
T ss_pred             hhh--hhhccC-CccEEeeccCcc-------------------------cccCc--ccccccCEEeCcCCcccccccc--
Confidence            431  233333 444444444444                         44433  2344455555555544433332  


Q ss_pred             hhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECC
Q 041976          500 SEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLS  579 (901)
Q Consensus       500 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  579 (901)
                        ..+++|+.|++++|.++......                .....+++|++|++++|.+.+..+. +..+++|++|+++
T Consensus       344 --~~~~~L~~L~l~~n~l~~~~~~~----------------~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~  404 (570)
T 2z63_A          344 --VDLPSLEFLDLSRNGLSFKGCCS----------------QSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQ  404 (570)
T ss_dssp             --CBCTTCCEEECCSSCCBEEEEEE----------------HHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECT
T ss_pred             --ccCCCCCEEeCcCCccCcccccc----------------ccccccCccCEEECCCCcccccccc-ccccCCCCEEEcc
Confidence              22344444444444433221000                0000134566777777777765444 8889999999999


Q ss_pred             CCcCcccCC-cchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCccc-ccCCccccCCCcccEEeCCCCcCc
Q 041976          580 NNRLNGTIP-ECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELG-GAIPQSLVNCTKVEVLDIGNIKIN  657 (901)
Q Consensus       580 ~n~l~~~~p-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~l~~n~l~  657 (901)
                      +|.+.+..| ..+..+. +|++|++++|.+.+..|..|..+++|++|++++|+++ +.+|..+..+++|++|++++|+++
T Consensus       405 ~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~  483 (570)
T 2z63_A          405 HSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE  483 (570)
T ss_dssp             TSEEESCTTSCTTTTCT-TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred             CCccccccchhhhhcCC-CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccc
Confidence            999887666 3455555 9999999999999888889999999999999999997 578889999999999999999999


Q ss_pred             cCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHH
Q 041976          658 DAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERF  714 (901)
Q Consensus       658 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~  714 (901)
                      +..|.++..+++|++|++++|++.+..+...  ..+++|+.|++++|++++.+|..+
T Consensus       484 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~~~~  538 (570)
T 2z63_A          484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCPRID  538 (570)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             cCChhhhhcccCCCEEeCCCCcCCCCCHHHh--hcccCCcEEEecCCcccCCCcchH
Confidence            9889999999999999999999987665543  678999999999999999888543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.3e-44  Score=420.92  Aligned_cols=488  Identities=21%  Similarity=0.235  Sum_probs=338.4

Q ss_pred             CcCccceeecCCCCeEEEEEcCCCCCCCCCCCCcccccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCC
Q 041976           68 CCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCK  147 (901)
Q Consensus        68 ~c~w~gv~c~~~~~~v~~l~L~~~~~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~  147 (901)
                      .|.|.|+ |+..          ++.++ .+|+  .+  .++|++|+|++|.+++. .|..++++++|++|+|++|.+.+.
T Consensus         3 ~C~~~~~-c~~~----------~~~l~-~ip~--~~--~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~   65 (549)
T 2z81_A            3 SCDASGV-CDGR----------SRSFT-SIPS--GL--TAAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTI   65 (549)
T ss_dssp             EECTTSE-EECT----------TSCCS-SCCS--CC--CTTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEE
T ss_pred             cCCCCce-EECC----------CCccc-cccc--cC--CCCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCcc
Confidence            4999998 8643          33343 3444  33  37999999999999875 578899999999999999999988


Q ss_pred             CCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCc-cC-CCCCCCCCcceeec
Q 041976          148 IPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAG-KF-PANNWTSPIEYLDV  225 (901)
Q Consensus       148 ~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~-~~-~~~~~~~~L~~L~L  225 (901)
                      .|..++.+              ++|++|++++|.+++..|..++++++|++|++++| .+++ .. +.+..+++|++|++
T Consensus        66 ~~~~~~~l--------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L  130 (549)
T 2z81_A           66 EGDAFYSL--------------GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRI  130 (549)
T ss_dssp             CTTTTTTC--------------TTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEE
T ss_pred             Chhhcccc--------------ccCCEEECCCCccCccCHHHhccCCCCcEEECCCC-cccccchhhhhhccCCccEEEC
Confidence            88889988              99999999999999888888999999999999999 7764 33 34677888888888


Q ss_pred             CCCC-CccCC-ccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCcc-ccCCCCCCEEEccCCcCc
Q 041976          226 SETS-FSELP-DSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSS-LSNLVQLTYLDLSSNSFF  302 (901)
Q Consensus       226 s~~~-l~~lp-~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~  302 (901)
                      ++|. +..+| ..++++++|++|++++|.+.+..|..++++++|++|++++|.+. .+|.. +..+++|++|++++|+++
T Consensus       131 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~  209 (549)
T 2z81_A          131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLA  209 (549)
T ss_dssp             EESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCT
T ss_pred             CCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccc
Confidence            8887 56665 46788888888888888888777888888888888888888775 33433 356778888888888777


Q ss_pred             ccC----CCCCCCCCCCEEECCCCCCCCCCC----ccccCCcCCcEEECcCCcCcccC------ChhhcCCCCCcEEEcc
Q 041976          303 GEI----PDIFNLTQVSFFDLSNNQLAGPIP----SHGSRLQNLVLIRLNNNSFSGTI------PSWLFSLPLLEYVRLS  368 (901)
Q Consensus       303 ~~~----~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~------~~~l~~l~~L~~L~L~  368 (901)
                      +..    +....+++|+.|++++|.+++..+    ..+..+++|+.+++++|.+.+..      ...+..+++|+.|++.
T Consensus       210 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  289 (549)
T 2z81_A          210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR  289 (549)
T ss_dssp             TCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEE
T ss_pred             cccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccc
Confidence            642    113346667777777776654332    23345566666666666654321      1123344455555555


Q ss_pred             CCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccc
Q 041976          369 DNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNT  448 (901)
Q Consensus       369 ~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  448 (901)
                      ++.+......                 ..++..+....+|+.|++++|.+..+ |...++.+++|++|++++|.+++..+
T Consensus       290 ~~~i~~~~~~-----------------~~l~~~~~~~~~L~~L~l~~n~l~~i-p~~~~~~l~~L~~L~Ls~N~l~~~~~  351 (549)
T 2z81_A          290 RLHIPQFYLF-----------------YDLSTVYSLLEKVKRITVENSKVFLV-PCSFSQHLKSLEFLDLSENLMVEEYL  351 (549)
T ss_dssp             SCBCSCGGGS-----------------CCCCHHHHHSTTCCEEEEESSCCCCC-CHHHHHHCTTCCEEECCSSCCCHHHH
T ss_pred             ccccchhhhc-----------------ccchhhhhhcccceEEEeccCccccC-CHHHHhcCccccEEEccCCccccccc
Confidence            4443321100                 01222334455666667766666544 32344566777777777776654321


Q ss_pred             --cccCCCCCCccEEecCCcCCCCCC---hhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccC
Q 041976          449 --FKIDSPFPKFSYLSLSACNISAFP---RFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQI  523 (901)
Q Consensus       449 --~~~~~~~~~L~~L~l~~~~l~~lp---~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~  523 (901)
                        ......+++|++|++++|+++.++   ..+..+++|++|++++|+++ .+|..+  ..+++|++|++++|.++.++..
T Consensus       352 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~~~~L~~L~Ls~N~l~~l~~~  428 (549)
T 2z81_A          352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSC--QWPEKMRFLNLSSTGIRVVKTC  428 (549)
T ss_dssp             HHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCC--CCCTTCCEEECTTSCCSCCCTT
T ss_pred             cchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhh--cccccccEEECCCCCcccccch
Confidence              112235667777777777776654   24667777777777777776 455544  4456666666666666544332


Q ss_pred             CCCCCceeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEEC
Q 041976          524 PWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDL  603 (901)
Q Consensus       524 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L  603 (901)
                      .                     +++|++|++++|++++..    ..+++|++|++++|+++ .+|. ...+ ++|++|++
T Consensus       429 ~---------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l-~~L~~L~L  480 (549)
T 2z81_A          429 I---------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLF-PVLLVMKI  480 (549)
T ss_dssp             S---------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGC-TTCCEEEC
T ss_pred             h---------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccC-ccCCEEec
Confidence            2                     346677777777776542    46788999999999998 6776 3444 49999999


Q ss_pred             CCCcccccCCcCccCCCccCEEEccCCcccccCC
Q 041976          604 RNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIP  637 (901)
Q Consensus       604 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  637 (901)
                      ++|++++..|..|..+++|++|++++|++.+..|
T Consensus       481 s~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          481 SRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            9999999888889999999999999999987655

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=5.2e-42  Score=409.01  Aligned_cols=513  Identities=22%  Similarity=0.208  Sum_probs=283.9

Q ss_pred             CCcceeecCCCCCccCCc-cccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEc
Q 041976          218 SPIEYLDVSETSFSELPD-SIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDL  296 (901)
Q Consensus       218 ~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  296 (901)
                      +++++|||++|.|+.+|. .|.++++|++|+|++|++.+..|.+|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            355666666666665543 4566666666666666665554555666666666666666665554555566666666666


Q ss_pred             cCCcCcccCCC-CCCCCCCCEEECCCCCCCC-CCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCcccc
Q 041976          297 SSNSFFGEIPD-IFNLTQVSFFDLSNNQLAG-PIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSG  374 (901)
Q Consensus       297 s~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  374 (901)
                      ++|++++..+. ++++++|++|++++|.+.+ ..|..++.+++|++|++++|.+++..+..+..+.+++           
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~-----------  200 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP-----------  200 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT-----------
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhh-----------
Confidence            66666554444 5556666666666665543 2445555556666666666665555554444333222           


Q ss_pred             ccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccc----
Q 041976          375 HIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFK----  450 (901)
Q Consensus       375 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----  450 (901)
                             .....++++.|.++...+.. .....+..+++.+|..........+..+..++...+..+.........    
T Consensus       201 -------~~~~~~~ls~n~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~  272 (635)
T 4g8a_A          201 -------LLNLSLDLSLNPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK  272 (635)
T ss_dssp             -------TCCCEEECTTCCCCEECTTT-TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCT
T ss_pred             -------hhhhhhhcccCcccccCccc-ccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccc
Confidence                   11223444444444322222 222334455555554433333344555555555544332221110000    


Q ss_pred             -cCCCCCCccEEecCCcCCC----CCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCC-
Q 041976          451 -IDSPFPKFSYLSLSACNIS----AFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIP-  524 (901)
Q Consensus       451 -~~~~~~~L~~L~l~~~~l~----~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~-  524 (901)
                       .......+....+..+...    .++..+.....++.+++.                          ++.+..+.... 
T Consensus       273 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--------------------------~~~~~~~~~~~~  326 (635)
T 4g8a_A          273 SALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLV--------------------------SVTIERVKDFSY  326 (635)
T ss_dssp             TTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEE--------------------------SCEEEECGGGGS
T ss_pred             cccccccchhhhhhhhhhhcccccchhhhhhhhccccccccc--------------------------cccccccccccc
Confidence             0001111111111111110    111222333344444444                          44433333221 


Q ss_pred             CCCCceeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcc--cCCcchhcCCCCccEEE
Q 041976          525 WKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNG--TIPECIGNFSPSLSVLD  602 (901)
Q Consensus       525 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~~~~~L~~L~  602 (901)
                      ..+++.|++.+|.+.+..+.....++.+++.+|.+...  .....+++|+.|++++|.+..  ..+....... +|+.++
T Consensus       327 ~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~-~L~~L~  403 (635)
T 4g8a_A          327 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTI-SLKYLD  403 (635)
T ss_dssp             CCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCS-CCCEEE
T ss_pred             chhhhhhhcccccccCcCcccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhh-hhhhhh
Confidence            23445555555554444444445556666666555432  223356667777777776642  2333344443 666666


Q ss_pred             CCCCcccccCCcCccCCCccCEEEccCCcccccCC-ccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCc
Q 041976          603 LRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIP-QSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFH  681 (901)
Q Consensus       603 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~  681 (901)
                      +..|.+.. .+..+..+++|+.+++++|......+ ..|..+++++.++++.|.+.+..+..+..+++|++|++++|.+.
T Consensus       404 ~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~  482 (635)
T 4g8a_A          404 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  482 (635)
T ss_dssp             CCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred             cccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccc
Confidence            66666653 33455666666666666665544333 33555566666666666665555555555555555544444422


Q ss_pred             ccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccce
Q 041976          682 GSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVF  761 (901)
Q Consensus       682 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L  761 (901)
                      ..                         ..|..+                                         ..+++|
T Consensus       483 ~~-------------------------~~~~~~-----------------------------------------~~l~~L  496 (635)
T 4g8a_A          483 EN-------------------------FLPDIF-----------------------------------------TELRNL  496 (635)
T ss_dssp             GG-------------------------EECSCC-----------------------------------------TTCTTC
T ss_pred             cc-------------------------cCchhh-----------------------------------------hhcccc
Confidence            11                         111110                                         014667


Q ss_pred             eEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCC-CCCCeeeCCC
Q 041976          762 TTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSL-TSLSVLNLSH  840 (901)
Q Consensus       762 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~  840 (901)
                      ++|||++|++++.+|..|+++++|++|+|++|+|++..|..|+++++|++|||++|+|++..|+.|..+ ++|++|+|++
T Consensus       497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~  576 (635)
T 4g8a_A          497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ  576 (635)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred             CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence            788888888888888889999999999999999999999999999999999999999999999999988 6899999999


Q ss_pred             CcCcc
Q 041976          841 NRLDG  845 (901)
Q Consensus       841 N~l~g  845 (901)
                      |++..
T Consensus       577 Np~~C  581 (635)
T 4g8a_A          577 NDFAC  581 (635)
T ss_dssp             CCBCC
T ss_pred             CCCcc
Confidence            99975

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.3e-43  Score=411.28  Aligned_cols=468  Identities=18%  Similarity=0.183  Sum_probs=297.6

Q ss_pred             ceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCc
Q 041976          221 EYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNS  300 (901)
Q Consensus       221 ~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  300 (901)
                      ++||+++|+++.+|..+.  ++|++|++++|.+.+..|..+.++++|++|++++|.+++..|..|+++++|++|++++|+
T Consensus         3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence            577888888888888776  789999999999888777888899999999999999988888889999999999999998


Q ss_pred             CcccCCCCCCCCCCCEEECCCCCCCC-CCCccccCCcCCcEEECcCCcCcccCChhhcCCCCC--cEEEccCCccccccC
Q 041976          301 FFGEIPDIFNLTQVSFFDLSNNQLAG-PIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLL--EYVRLSDNQLSGHID  377 (901)
Q Consensus       301 l~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l~~~~~  377 (901)
                      ++...+ . .+++|++|++++|.+++ .+|..++.+++|++|++++|.+++   ..+..+++|  ++|++++|.+.+   
T Consensus        81 l~~lp~-~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~---  152 (520)
T 2z7x_B           81 LVKISC-H-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG---  152 (520)
T ss_dssp             CCEEEC-C-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT---
T ss_pred             eeecCc-c-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc---
Confidence            885433 3 78888888888888876 467788888888888888888765   345555666  777766666511   


Q ss_pred             CCCCCCCCEEEccCccCCCCCchhhhccc-ccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCC
Q 041976          378 EFPSKSLQNIYLSNNRLQGSIPSSIFELV-NLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFP  456 (901)
Q Consensus       378 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  456 (901)
                                       .+..|..+..+. +...+++++|.+.+..+...+..+++|+.+++++|.......        
T Consensus       153 -----------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--------  207 (520)
T 2z7x_B          153 -----------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS--------  207 (520)
T ss_dssp             -----------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH--------
T ss_pred             -----------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc--------
Confidence                             223333333322 122334444444443333334444444444444432000000        


Q ss_pred             CccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhh-cCCCCccEEEcCCCccCCcccCCCCCCceeeccC
Q 041976          457 KFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISE-IGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRS  535 (901)
Q Consensus       457 ~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~-~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~  535 (901)
                                .+......+..+++|+.|++++|.+.+..+..+.. ..                                
T Consensus       208 ----------~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~--------------------------------  245 (520)
T 2z7x_B          208 ----------YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW--------------------------------  245 (520)
T ss_dssp             ----------HHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH--------------------------------
T ss_pred             ----------eeecchhhhccccchhhccccccccCHHHHHHHHHHhh--------------------------------
Confidence                      00000013444555555555555554322221100 00                                


Q ss_pred             ccccCCCCCCCCCCcEEEccCCcccccccccc-----ccCCCCCEEECCCCcCcccCC-cchhcC--CCCccEEECCCCc
Q 041976          536 NLLQGPLPVPPSSLRVLLISNNQFTGEIIHSI-----CDIIALDVLDLSNNRLNGTIP-ECIGNF--SPSLSVLDLRNNR  607 (901)
Q Consensus       536 n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~p-~~~~~~--~~~L~~L~L~~n~  607 (901)
                                .++|++|++++|++++.+|..+     ..++.|+.+++++|.+  .+| ..+...  .++|+.|++++|.
T Consensus       246 ----------~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~  313 (520)
T 2z7x_B          246 ----------HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR  313 (520)
T ss_dssp             ----------TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred             ----------hCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc
Confidence                      1234445555555555555555     6677777777777777  455 333332  0267788888877


Q ss_pred             ccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCcc--CccccccCCCCCcEEEccCCcCcccCC
Q 041976          608 LNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKIND--AFPYWLGNLPELQVLVLRSNKFHGSVR  685 (901)
Q Consensus       608 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~~~~~~~  685 (901)
                      +....  .+..+++|++|++++|++++..|..+..+++|++|++++|++.+  .+|..+..+++|++|++++|++.+.++
T Consensus       314 l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~  391 (520)
T 2z7x_B          314 MVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK  391 (520)
T ss_dssp             CCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG
T ss_pred             ccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc
Confidence            75432  12567777788888887777777777777777777777777776  445666677777777777666654333


Q ss_pred             CCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEE
Q 041976          686 EFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTID  765 (901)
Q Consensus       686 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  765 (901)
                      .. .+..+++                                                                 |++|+
T Consensus       392 ~~-~~~~l~~-----------------------------------------------------------------L~~L~  405 (520)
T 2z7x_B          392 KG-DCSWTKS-----------------------------------------------------------------LLSLN  405 (520)
T ss_dssp             GC-SCCCCTT-----------------------------------------------------------------CCEEE
T ss_pred             cc-hhccCcc-----------------------------------------------------------------CCEEE
Confidence            21 1123344                                                                 44555


Q ss_pred             ccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCcc
Q 041976          766 FSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDG  845 (901)
Q Consensus       766 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  845 (901)
                      +++|++++.+|..+.  ++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|++|++++|++++
T Consensus       406 Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             CCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence            555555544444432  67888888888888 667777788888888888888885444448888888888998888887


Q ss_pred             CCC
Q 041976          846 PIP  848 (901)
Q Consensus       846 ~iP  848 (901)
                      ..|
T Consensus       483 ~c~  485 (520)
T 2z7x_B          483 SCP  485 (520)
T ss_dssp             CHH
T ss_pred             cCC
Confidence            544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.8e-44  Score=426.10  Aligned_cols=362  Identities=20%  Similarity=0.285  Sum_probs=220.0

Q ss_pred             CcCcccCChhhcCCCCCcEEEccCCccccc-----------------cCCC----CCCCCCEEEccCccCCCCCchhhhc
Q 041976          346 NSFSGTIPSWLFSLPLLEYVRLSDNQLSGH-----------------IDEF----PSKSLQNIYLSNNRLQGSIPSSIFE  404 (901)
Q Consensus       346 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~~~~----~~~~L~~L~L~~n~l~~~~~~~~~~  404 (901)
                      |++++ +|..++++++|++|++++|.+++.                 +|..    .+++|++|++++|.+.+.+|..+++
T Consensus       193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~  271 (636)
T 4eco_A          193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA  271 (636)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred             CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence            44444 455555555555555555555542                 3322    3556666666666667777778888


Q ss_pred             ccccCceecccCc-CCC-ccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCCh--hhccCCC
Q 041976          405 LVNLTDLQLDSNN-FSG-IAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPR--FLRTQDE  480 (901)
Q Consensus       405 l~~L~~L~L~~n~-l~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~--~l~~~~~  480 (901)
                      +++|++|++++|+ +++ ..| ..++.+..                   ...+++|++|++++|+++.+|.  .+..+++
T Consensus       272 l~~L~~L~Ls~n~~l~~~~lp-~~~~~L~~-------------------~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~  331 (636)
T 4eco_A          272 LPEMQLINVACNRGISGEQLK-DDWQALAD-------------------APVGEKIQIIYIGYNNLKTFPVETSLQKMKK  331 (636)
T ss_dssp             CSSCCEEECTTCTTSCHHHHH-HHHHHHHH-------------------SGGGGTCCEEECCSSCCSSCCCHHHHTTCTT
T ss_pred             CCCCCEEECcCCCCCccccch-HHHHhhhc-------------------cccCCCCCEEECCCCcCCccCchhhhccCCC
Confidence            8888888888887 776 433 44544410                   0012233333333344444555  5666666


Q ss_pred             CCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCccc
Q 041976          481 LSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFT  560 (901)
Q Consensus       481 L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~  560 (901)
                      |++|++++|++.|.+| .                                                              
T Consensus       332 L~~L~L~~N~l~g~ip-~--------------------------------------------------------------  348 (636)
T 4eco_A          332 LGMLECLYNQLEGKLP-A--------------------------------------------------------------  348 (636)
T ss_dssp             CCEEECCSCCCEEECC-C--------------------------------------------------------------
T ss_pred             CCEEeCcCCcCccchh-h--------------------------------------------------------------
Confidence            7777766666665555 2                                                              


Q ss_pred             cccccccccCCCCCEEECCCCcCcccCCcchhcCCCC-ccEEECCCCcccccCCcCccCCC--ccCEEEccCCcccccCC
Q 041976          561 GEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPS-LSVLDLRNNRLNGSIPGTFAESN--WLRSLNLNNNELGGAIP  637 (901)
Q Consensus       561 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~  637 (901)
                            +..+++|++|++++|.++ .+|..+..+. + |++|++++|.++ .+|..+..++  +|++|++++|++++..|
T Consensus       349 ------~~~l~~L~~L~L~~N~l~-~lp~~l~~l~-~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p  419 (636)
T 4eco_A          349 ------FGSEIKLASLNLAYNQIT-EIPANFCGFT-EQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG  419 (636)
T ss_dssp             ------CEEEEEESEEECCSSEEE-ECCTTSEEEC-TTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred             ------hCCCCCCCEEECCCCccc-cccHhhhhhc-ccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence                  233334444444444444 4444444443 3 444444444444 3344443332  45555555555555555


Q ss_pred             cccc-------CCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCC------CCCCCCCcEEEcCCC
Q 041976          638 QSLV-------NCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEP------KESFPKLRILDLSIN  704 (901)
Q Consensus       638 ~~l~-------~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~------~~~l~~L~~L~Ls~n  704 (901)
                      ..+.       .+++|++|++++|++....+..+..+++|++|++++|++. .++....      ...+++|+.|++++|
T Consensus       420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N  498 (636)
T 4eco_A          420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFN  498 (636)
T ss_dssp             CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred             hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCC
Confidence            5444       4555666666666655443334445566666666666655 2222111      112337888888888


Q ss_pred             ccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCC
Q 041976          705 NFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHS  784 (901)
Q Consensus       705 ~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  784 (901)
                      +++ .+|..+..                                       ..+++|+.|+|++|++++ +|..+.++++
T Consensus       499 ~l~-~lp~~~~~---------------------------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~  537 (636)
T 4eco_A          499 KLT-KLSDDFRA---------------------------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSST  537 (636)
T ss_dssp             CCC-BCCGGGST---------------------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSS
T ss_pred             cCC-ccChhhhh---------------------------------------ccCCCcCEEECCCCCCCC-cChhhhcCCC
Confidence            887 56643210                                       015778889999999987 7888889999


Q ss_pred             CCeEeC------CCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCcc
Q 041976          785 LRLLNL------SHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDG  845 (901)
Q Consensus       785 L~~L~L------s~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  845 (901)
                      |++|+|      ++|++.+.+|..++++++|++|+|++|++ +.+|..+.  ++|++|+|++|++..
T Consensus       538 L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             CCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             CCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence            999999      56888999999999999999999999999 67888766  899999999998874

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.8e-43  Score=404.78  Aligned_cols=457  Identities=21%  Similarity=0.197  Sum_probs=251.8

Q ss_pred             ceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccc
Q 041976          110 QTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPIN  189 (901)
Q Consensus       110 ~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~  189 (901)
                      ++||+++|.++.  +|..+.  ++|++|+|++|.+.+..|..+..+              ++|++|++++|.+++..|..
T Consensus         3 ~~l~ls~n~l~~--ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l--------------~~L~~L~Ls~n~l~~~~~~~   64 (520)
T 2z7x_B            3 FLVDRSKNGLIH--VPKDLS--QKTTILNISQNYISELWTSDILSL--------------SKLRILIISHNRIQYLDISV   64 (520)
T ss_dssp             CEEECTTSCCSS--CCCSCC--TTCSEEECCSSCCCCCCHHHHTTC--------------TTCCEEECCSSCCCEEEGGG
T ss_pred             ceEecCCCCccc--cccccc--ccccEEECCCCcccccChhhcccc--------------ccccEEecCCCccCCcChHH
Confidence            467777777764  666555  777777777777776555667766              77777777777777777777


Q ss_pred             cCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCcc--CCccccCCCCcCEEECCCCCCccCCCccccCCCCC
Q 041976          190 IFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSE--LPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQL  267 (901)
Q Consensus       190 l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~--lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L  267 (901)
                      ++++++|++|+|++| .++ .+|.. .+++|++|++++|.++.  +|..++++++|++|++++|.+.+   ..+..+++|
T Consensus        65 ~~~l~~L~~L~Ls~N-~l~-~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L  138 (520)
T 2z7x_B           65 FKFNQELEYLDLSHN-KLV-KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHL  138 (520)
T ss_dssp             GTTCTTCCEEECCSS-CCC-EEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTS
T ss_pred             hhcccCCCEEecCCC-cee-ecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccc
Confidence            777777777777777 555 34433 44555555555555543  34555555555555555555543   234444444


Q ss_pred             --CEEECCCCcC--CCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCC-ccccCCcCCcEEE
Q 041976          268 --TLLHLMHNNF--SGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIP-SHGSRLQNLVLIR  342 (901)
Q Consensus       268 --~~L~L~~n~l--~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~  342 (901)
                        ++|++++|.+  .+..|..+..+..                      ....+++++|.+.+.++ ..+..+++|+.++
T Consensus       139 ~L~~L~l~~n~l~~~~~~~~~l~~l~~----------------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~  196 (520)
T 2z7x_B          139 NISKVLLVLGETYGEKEDPEGLQDFNT----------------------ESLHIVFPTNKEFHFILDVSVKTVANLELSN  196 (520)
T ss_dssp             CEEEEEEEECTTTTSSCCTTTTTTCCE----------------------EEEEEECCSSSCCCCCCCCCCTTCSEEEECC
T ss_pred             eeeEEEeeccccccccccccccccccc----------------------ceEEEEeccCcchhhhhhhhhhcccceeecc
Confidence              5555555555  4444444443331                      12233444444433322 2344555556666


Q ss_pred             CcCCc-------CcccCChhhcCCCCCcEEEccCCccccccCC-----CCCCCCCEEEccCccCCCCCchhh-----hcc
Q 041976          343 LNNNS-------FSGTIPSWLFSLPLLEYVRLSDNQLSGHIDE-----FPSKSLQNIYLSNNRLQGSIPSSI-----FEL  405 (901)
Q Consensus       343 L~~n~-------l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-----~~~~~L~~L~L~~n~l~~~~~~~~-----~~l  405 (901)
                      +++|.       +.+.++ .++.+++|+.|++++|.+.+....     ...++|++|++++|.+++.+|..+     +.+
T Consensus       197 l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l  275 (520)
T 2z7x_B          197 IKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL  275 (520)
T ss_dssp             EEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCC
T ss_pred             ccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccC
Confidence            55554       444443 466666677777666655532111     123467777777777766666666     667


Q ss_pred             cccCceecccCcCCCccchhhhhhc---CCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCC
Q 041976          406 VNLTDLQLDSNNFSGIAEPYMFAKL---IKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELS  482 (901)
Q Consensus       406 ~~L~~L~L~~n~l~~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~  482 (901)
                      ++|+.+++++|.+ .. |...+..+   .+|+.|++++|.+....                          ....+++|+
T Consensus       276 ~~L~~l~l~~n~~-~~-p~~~~~~~~~~~~L~~L~l~~n~l~~~~--------------------------~~~~l~~L~  327 (520)
T 2z7x_B          276 KALSIHQVVSDVF-GF-PQSYIYEIFSNMNIKNFTVSGTRMVHML--------------------------CPSKISPFL  327 (520)
T ss_dssp             CEEEEEEEEECCC-CS-CTHHHHHHHHTCCCSEEEEESSCCCCCC--------------------------CCSSCCCCC
T ss_pred             ceeEeccccccce-ec-chhhhhcccccCceeEEEcCCCcccccc--------------------------chhhCCccc
Confidence            7777777777776 32 22333333   44555555555443211                          012334444


Q ss_pred             EEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCccccc
Q 041976          483 YLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGE  562 (901)
Q Consensus       483 ~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~  562 (901)
                      +|++++|++.+..|                                                                  
T Consensus       328 ~L~Ls~n~l~~~~~------------------------------------------------------------------  341 (520)
T 2z7x_B          328 HLDFSNNLLTDTVF------------------------------------------------------------------  341 (520)
T ss_dssp             EEECCSSCCCTTTT------------------------------------------------------------------
T ss_pred             EEEeECCccChhhh------------------------------------------------------------------
Confidence            44444444443333                                                                  


Q ss_pred             cccccccCCCCCEEECCCCcCcc--cCCcchhcCCCCccEEECCCCcccccCC-cCccCCCccCEEEccCCcccccCCcc
Q 041976          563 IIHSICDIIALDVLDLSNNRLNG--TIPECIGNFSPSLSVLDLRNNRLNGSIP-GTFAESNWLRSLNLNNNELGGAIPQS  639 (901)
Q Consensus       563 ~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~  639 (901)
                        ..+..+++|++|++++|.+++  .+|..+..+. +|++|++++|++++.+| ..|..+++|++|++++|++++..|..
T Consensus       342 --~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~-~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  418 (520)
T 2z7x_B          342 --ENCGHLTELETLILQMNQLKELSKIAEMTTQMK-SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC  418 (520)
T ss_dssp             --TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT-TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS
T ss_pred             --hhhccCCCCCEEEccCCccCccccchHHHhhCC-CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhh
Confidence              333334444444444444442  2233333333 45555555555544222 23455555555666666555555444


Q ss_pred             ccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHH
Q 041976          640 LVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFL  715 (901)
Q Consensus       640 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  715 (901)
                      +.  ++|++|++++|+++ .+|..+..+++|++|++++|++.. ++.. .+..+++|++|++++|++.+..+..++
T Consensus       419 l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~  489 (520)
T 2z7x_B          419 LP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDG-IFDRLTSLQKIWLHTNPWDCSCPRIDY  489 (520)
T ss_dssp             CC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTT-TTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred             hc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHH-HhccCCcccEEECcCCCCcccCCchHH
Confidence            43  45666666666665 445555566666666666666663 2222 235677788888888888777665444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=9.2e-41  Score=398.22  Aligned_cols=524  Identities=23%  Similarity=0.182  Sum_probs=332.3

Q ss_pred             ccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCC
Q 041976          107 LHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNF  186 (901)
Q Consensus       107 ~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~  186 (901)
                      +++++|||++|.++.. .+..|.++++|++|+|++|.+++..|..+.++              ++|++|+|++|++++..
T Consensus        52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L--------------~~L~~L~Ls~N~l~~l~  116 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL--------------SHLSTLILTGNPIQSLA  116 (635)
T ss_dssp             TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTC--------------TTCCEEECTTCCCCEEC
T ss_pred             cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCC--------------CCCCEEEccCCcCCCCC
Confidence            3678888888888763 34568888888888888888775555567777              78888888888777666


Q ss_pred             ccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCcc-CCCccccCCC
Q 041976          187 PINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVG-PVPASLGNLT  265 (901)
Q Consensus       187 p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~-~~p~~l~~l~  265 (901)
                      +..|.++++|++|+|++| .+++..+                      ..|+++++|++|++++|.+.+ ..|..++.++
T Consensus       117 ~~~f~~L~~L~~L~Ls~N-~l~~l~~----------------------~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~  173 (635)
T 4g8a_A          117 LGAFSGLSSLQKLVAVET-NLASLEN----------------------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT  173 (635)
T ss_dssp             GGGGTTCTTCCEEECTTS-CCCCSTT----------------------CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred             HHHhcCCCCCCEEECCCC-cCCCCCh----------------------hhhhcCcccCeeccccCccccCCCchhhccch
Confidence            667777777777777777 5554333                      346667777777777776654 3456666777


Q ss_pred             CCCEEECCCCcCCCCCCccccCCCCC----CEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCC-CCCccccCCcCCcE
Q 041976          266 QLTLLHLMHNNFSGHIPSSLSNLVQL----TYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAG-PIPSHGSRLQNLVL  340 (901)
Q Consensus       266 ~L~~L~L~~n~l~~~~p~~l~~l~~L----~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~  340 (901)
                      +|++|++++|++++..+..+..+.++    ..++++.|.+....+.......++.+++.+|.... ..+..+..+..++.
T Consensus       174 ~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~  253 (635)
T 4g8a_A          174 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV  253 (635)
T ss_dssp             TCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEE
T ss_pred             hhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccc
Confidence            77777777777776666666544333    35666777666555554445555666666654432 12233444455544


Q ss_pred             EECcCCcC------cccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecc
Q 041976          341 IRLNNNSF------SGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLD  414 (901)
Q Consensus       341 L~L~~n~l------~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  414 (901)
                      ..+..+..      .......+.....+....+..+.....                   ....+..+..+.+++.+.+.
T Consensus       254 ~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~-------------------~~~~~~~~~~~~~l~~l~~~  314 (635)
T 4g8a_A          254 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY-------------------LDGIIDLFNCLTNVSSFSLV  314 (635)
T ss_dssp             EEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSC-------------------EEECTTTTGGGTTCSEEEEE
T ss_pred             ccccccccccccccccccccccccccchhhhhhhhhhhccc-------------------ccchhhhhhhhccccccccc
Confidence            44332221      111112222223333333222211100                   01122334455566666666


Q ss_pred             cCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCccccc
Q 041976          415 SNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQ  494 (901)
Q Consensus       415 ~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~  494 (901)
                      .+.+...   ..+.....++.|++.+|.+......    .++.|+.+.+..+.+...+. ...+++|+.+++++|.+...
T Consensus       315 ~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~L~~l~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~~  386 (635)
T 4g8a_A          315 SVTIERV---KDFSYNFGWQHLELVNCKFGQFPTL----KLKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRNGLSFK  386 (635)
T ss_dssp             SCEEEEC---GGGGSCCCCSEEEEESCEESSCCCC----BCTTCCEEEEESCCSCCBCC-CCBCTTCCEEECCSSCCBEE
T ss_pred             ccccccc---cccccchhhhhhhcccccccCcCcc----cchhhhhcccccccCCCCcc-cccccccccchhhccccccc
Confidence            6665544   2345556666677666665543321    34566666666666554432 33566777777777766533


Q ss_pred             CChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCccccccc-cccccCCCC
Q 041976          495 IPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEII-HSICDIIAL  573 (901)
Q Consensus       495 ~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L  573 (901)
                      .+.........+++.++++.+.+......                   ....++|+.+++.++......+ ..+..++.+
T Consensus       387 ~~~~~~~~~~~~L~~L~~~~~~~~~~~~~-------------------~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l  447 (635)
T 4g8a_A          387 GCCSQSDFGTISLKYLDLSFNGVITMSSN-------------------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  447 (635)
T ss_dssp             EECCHHHHSCSCCCEEECCSCSEEEECSC-------------------CTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred             cccccchhhhhhhhhhhcccccccccccc-------------------ccccccccchhhhhcccccccccccccccccc
Confidence            22222224556666666666554433221                   1123556666666665554333 456678888


Q ss_pred             CEEECCCCcCcccCCcchhcCCCCccEEECCCCcc-cccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCC
Q 041976          574 DVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRL-NGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIG  652 (901)
Q Consensus       574 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  652 (901)
                      +.++++.|.+.+..+..+.... .|+.|++++|.+ .+..|..|..+++|++|+|++|++++..|..|.++++|++|+|+
T Consensus       448 ~~l~ls~n~l~~~~~~~~~~~~-~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls  526 (635)
T 4g8a_A          448 IYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS  526 (635)
T ss_dssp             CEEECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             ccccccccccccccccccccch-hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECC
Confidence            8888888888876666666655 888888888874 44567888888889999999999988888888888999999999


Q ss_pred             CCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCC-CCCcEEEcCCCccccCCcHHHHHh
Q 041976          653 NIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESF-PKLRILDLSINNFSGYLPERFLEN  717 (901)
Q Consensus       653 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~~  717 (901)
                      +|++++..|..|.++++|++|+|++|++++..+...  ..+ ++|++|++++|++.+.....+|..
T Consensus       527 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--~~l~~~L~~L~L~~Np~~C~C~~~~~~~  590 (635)
T 4g8a_A          527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL--QHFPSSLAFLNLTQNDFACTCEHQSFLQ  590 (635)
T ss_dssp             TSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT--TCCCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred             CCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH--HhhhCcCCEEEeeCCCCcccCCcHHHHH
Confidence            999888888888888999999999999887776654  445 679999999999988766555443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=8.1e-42  Score=408.92  Aligned_cols=361  Identities=20%  Similarity=0.278  Sum_probs=208.9

Q ss_pred             CCCccCCCccccCCCCCCEEECCCCcCCC-----------------CCCcccc--CCCCCCEEEccCCcCcccCCC-CCC
Q 041976          251 SQFVGPVPASLGNLTQLTLLHLMHNNFSG-----------------HIPSSLS--NLVQLTYLDLSSNSFFGEIPD-IFN  310 (901)
Q Consensus       251 n~~~~~~p~~l~~l~~L~~L~L~~n~l~~-----------------~~p~~l~--~l~~L~~L~Ls~n~l~~~~~~-~~~  310 (901)
                      |.+++ +|..++++++|++|++++|.+++                 .+|..++  ++++|++|++++|.+.+.+|. +.+
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~  513 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD  513 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence            44444 55555555555555555555554                 2566655  666666666666666666665 666


Q ss_pred             CCCCCEEECCCCC-CCC-CCCccccCCc-------CCcEEECcCCcCcccCCh--hhcCCCCCcEEEccCCccccccCCC
Q 041976          311 LTQVSFFDLSNNQ-LAG-PIPSHGSRLQ-------NLVLIRLNNNSFSGTIPS--WLFSLPLLEYVRLSDNQLSGHIDEF  379 (901)
Q Consensus       311 l~~L~~L~l~~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~  379 (901)
                      +++|++|++++|+ +++ .+|..++.++       +|++|++++|.++ .+|.  .++.+++|+.|++++|.+. .+|.+
T Consensus       514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~  591 (876)
T 4ecn_A          514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAF  591 (876)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCC
T ss_pred             CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhh
Confidence            6666666666666 665 5665554444       7777777777776 5666  6777777777777777766 44433


Q ss_pred             -CCCCCCEEEccCccCCCCCchhhhcccc-cCceecccCcCCCccchhhhhhcC--CCcEEEccCCcccccccccc--C-
Q 041976          380 -PSKSLQNIYLSNNRLQGSIPSSIFELVN-LTDLQLDSNNFSGIAEPYMFAKLI--KLKYLYLSHNSLSLGNTFKI--D-  452 (901)
Q Consensus       380 -~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~--~-  452 (901)
                       .+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++.+ | ..+..++  +|+.|++++|.+.+..+...  . 
T Consensus       592 ~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~l-p-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~  668 (876)
T 4ecn_A          592 GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYI-P-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD  668 (876)
T ss_dssp             CTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSC-C-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred             cCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcC-c-hhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence             5667777777777777 67777888887 88888888888754 2 3454443  37788888877765322110  0 


Q ss_pred             -CCCCCccEEecCCcCCCCCChhh-ccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCce
Q 041976          453 -SPFPKFSYLSLSACNISAFPRFL-RTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGY  530 (901)
Q Consensus       453 -~~~~~L~~L~l~~~~l~~lp~~l-~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~  530 (901)
                       ...++|+.|++++|.+..+|..+ ..+++|+.|++++|++. .+|..+                         +.... 
T Consensus       669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~-------------------------~~~~~-  721 (876)
T 4ecn_A          669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENS-------------------------LKPKD-  721 (876)
T ss_dssp             TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTS-------------------------SSCTT-
T ss_pred             cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHH-------------------------hcccc-
Confidence             12346666666666666666543 35666666666666665 333322                         10000 


Q ss_pred             eeccCccccCCCCCCCCCCcEEEccCCccccccccccc--cCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCC---
Q 041976          531 LDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSIC--DIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRN---  605 (901)
Q Consensus       531 L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~---  605 (901)
                                .....+++|+.|++++|+++ .+|..+.  .+++|+.|++++|.+++ +|..+..+. +|+.|+|++   
T Consensus       722 ----------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~-~L~~L~Ls~N~~  788 (876)
T 4ecn_A          722 ----------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSS-QLKAFGIRHQRD  788 (876)
T ss_dssp             ----------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCT-TCCEEECCCCBC
T ss_pred             ----------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCC-CCCEEECCCCCC
Confidence                      00000124555555555555 4455554  66666666666666664 566666554 666666655   


Q ss_pred             ---CcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCc
Q 041976          606 ---NRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAF  660 (901)
Q Consensus       606 ---n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  660 (901)
                         |++.+.+|..|..+++|+.|+|++|++ +.+|..+.  ++|+.|+|++|++....
T Consensus       789 ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~  843 (876)
T 4ecn_A          789 AEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISID  843 (876)
T ss_dssp             TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred             cccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccC
Confidence               444444455555555555555555555 34444332  34455555555444433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.1e-41  Score=362.61  Aligned_cols=294  Identities=27%  Similarity=0.436  Sum_probs=258.5

Q ss_pred             CCCCHHHHHHHHHhhhcCcCCCCCccccccCCCcCCCCCCCCCCcC--ccceeecCCC--CeEEEEEcCCCCCCC--CCC
Q 041976           25 KHCPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKDTNCCS--WDGVTCDMAT--GNVISLDLSCSWLHG--NIP   98 (901)
Q Consensus        25 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c~--w~gv~c~~~~--~~v~~l~L~~~~~~g--~~~   98 (901)
                      +.|.++|++||++||+++.++.           .+++|..+++||.  |.||+|+..+  ++|++|+|+++.+.|  .++
T Consensus         1 ~~c~~~~~~aL~~~k~~~~~~~-----------~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~   69 (313)
T 1ogq_A            1 ELCNPQDKQALLQIKKDLGNPT-----------TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP   69 (313)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCCG-----------GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECC
T ss_pred             CCCCHHHHHHHHHHHHhcCCcc-----------cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccC
Confidence            3699999999999999996432           5899988889998  9999998655  899999999999999  788


Q ss_pred             CCcccccCccCceEeCCC-CCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEc
Q 041976           99 TNTSLFHLLHLQTLNLSH-NDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSL  177 (901)
Q Consensus        99 ~~~~l~~l~~L~~L~Ls~-n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~L  177 (901)
                      +  .+.++++|++|++++ |.+.+. +|..++++++|++|+|++|.+.+.+|..++.+              ++|++|++
T Consensus        70 ~--~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l--------------~~L~~L~L  132 (313)
T 1ogq_A           70 S--SLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI--------------KTLVTLDF  132 (313)
T ss_dssp             G--GGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGC--------------TTCCEEEC
T ss_pred             h--hHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCC--------------CCCCEEeC
Confidence            7  899999999999995 888876 88899999999999999999998999999888              99999999


Q ss_pred             CCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCC-CcCEEECCCCCCccC
Q 041976          178 SDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLK-LLGRLMLGYSQFVGP  256 (901)
Q Consensus       178 s~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~-~L~~L~L~~n~~~~~  256 (901)
                      ++|.+.+.+|..++.+++|++|++++| .+++.+|                      ..++.++ +|++|++++|.+.+.
T Consensus       133 s~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p----------------------~~l~~l~~~L~~L~L~~N~l~~~  189 (313)
T 1ogq_A          133 SYNALSGTLPPSISSLPNLVGITFDGN-RISGAIP----------------------DSYGSFSKLFTSMTISRNRLTGK  189 (313)
T ss_dssp             CSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECC----------------------GGGGCCCTTCCEEECCSSEEEEE
T ss_pred             CCCccCCcCChHHhcCCCCCeEECcCC-cccCcCC----------------------HHHhhhhhcCcEEECcCCeeecc
Confidence            999999999999999999999999988 7777666                      7788887 889999999998888


Q ss_pred             CCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCc
Q 041976          257 VPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQ  336 (901)
Q Consensus       257 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  336 (901)
                      +|..+..++ |++|++++|.+++..|..+..+++|++|++++|.+++.++.+..+++|++|++++|.+++.+|.++..++
T Consensus       190 ~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  268 (313)
T 1ogq_A          190 IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK  268 (313)
T ss_dssp             CCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCT
T ss_pred             CChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCc
Confidence            888888887 9999999999988888888999999999999999887777777888899999999988888888888888


Q ss_pred             CCcEEECcCCcCcccCChhhcCCCCCcEEEccCCc
Q 041976          337 NLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQ  371 (901)
Q Consensus       337 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  371 (901)
                      +|++|++++|.+++.+|.. ..+++|+.+++++|.
T Consensus       269 ~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          269 FLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             TCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             CCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            8888999888888888875 778888888888886

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.7e-40  Score=385.37  Aligned_cols=470  Identities=17%  Similarity=0.188  Sum_probs=279.8

Q ss_pred             CCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEc
Q 041976          217 TSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDL  296 (901)
Q Consensus       217 ~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  296 (901)
                      +...+++++++++++.+|..+.  ++|++|++++|.+.+..|..+.++++|++|++++|.+++..|..|.++++|++|++
T Consensus        30 ~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           30 NELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             ---CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            3345888888888888887665  78888888888888777778888888888888888888777888888888888888


Q ss_pred             cCCcCcccCCCCCCCCCCCEEECCCCCCCC-CCCccccCCcCCcEEECcCCcCcccCChhhcCCCCC--cEEEccCCccc
Q 041976          297 SSNSFFGEIPDIFNLTQVSFFDLSNNQLAG-PIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLL--EYVRLSDNQLS  373 (901)
Q Consensus       297 s~n~l~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l~  373 (901)
                      ++|.++...+ . .+++|++|++++|++++ ..|..++++++|++|++++|.+++..   +..+++|  ++|++++|.+.
T Consensus       108 s~N~l~~lp~-~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~  182 (562)
T 3a79_B          108 SHNRLQNISC-C-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYH  182 (562)
T ss_dssp             TTSCCCEECS-C-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCC
T ss_pred             CCCcCCccCc-c-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeeccccc
Confidence            8888774333 3 67777777777777765 34567777777777777777766432   3333333  66666655551


Q ss_pred             cccCCCCCCCCCEEEccCccCCCCCchhhhccc-ccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccC
Q 041976          374 GHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELV-NLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKID  452 (901)
Q Consensus       374 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  452 (901)
                      .                    ++..|..+..+. ..-.++++.|.+.+..+...+..+++|+.+++++|......     
T Consensus       183 ~--------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-----  237 (562)
T 3a79_B          183 I--------------------KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR-----  237 (562)
T ss_dssp             C--------------------CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHH-----
T ss_pred             c--------------------cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccch-----
Confidence            0                    333344443322 11133555555555444344455555555555554311000     


Q ss_pred             CCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhh-hcCCCCccEEEcCCCccCCcccCCCCCCcee
Q 041976          453 SPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWIS-EIGKDSLSYVNLSHNFITKMKQIPWKNLGYL  531 (901)
Q Consensus       453 ~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~-~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L  531 (901)
                                     +......+..++.|+.++++++.+.+.....+. ...                            
T Consensus       238 ---------------l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~----------------------------  274 (562)
T 3a79_B          238 ---------------LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW----------------------------  274 (562)
T ss_dssp             ---------------HHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT----------------------------
T ss_pred             ---------------HHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh----------------------------
Confidence                           000112234445555555544443321111100 000                            


Q ss_pred             eccCccccCCCCCCCCCCcEEEccCCcccccccccc-----ccCCCCCEEECCCCcCcccCCc-chhcC--CCCccEEEC
Q 041976          532 DLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSI-----CDIIALDVLDLSNNRLNGTIPE-CIGNF--SPSLSVLDL  603 (901)
Q Consensus       532 ~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~p~-~~~~~--~~~L~~L~L  603 (901)
                                    ..+|++|++++|.+++.+|..+     ..++.|+.++++.+.+  .+|. .+...  .++|++|++
T Consensus       275 --------------~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l  338 (562)
T 3a79_B          275 --------------PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSI  338 (562)
T ss_dssp             --------------TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEE
T ss_pred             --------------cccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEc
Confidence                          0133444444444444444433     3444444555555554  3331 11111  025777777


Q ss_pred             CCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccC--ccccccCCCCCcEEEccCCcCc
Q 041976          604 RNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDA--FPYWLGNLPELQVLVLRSNKFH  681 (901)
Q Consensus       604 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~L~~n~~~  681 (901)
                      ++|.+....  ....+++|++|++++|++++..|..+.++++|++|++++|++++.  .|..+.++++|++|++++|++.
T Consensus       339 ~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~  416 (562)
T 3a79_B          339 SDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN  416 (562)
T ss_dssp             ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred             cCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence            777664321  125566677777777777766666667777777777777766653  2344556666666666666555


Q ss_pred             ccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccce
Q 041976          682 GSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVF  761 (901)
Q Consensus       682 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L  761 (901)
                      +.++... +..+                                                                 ++|
T Consensus       417 ~~~~~~~-~~~l-----------------------------------------------------------------~~L  430 (562)
T 3a79_B          417 SHAYDRT-CAWA-----------------------------------------------------------------ESI  430 (562)
T ss_dssp             SCCSSCC-CCCC-----------------------------------------------------------------TTC
T ss_pred             CccChhh-hcCc-----------------------------------------------------------------ccC
Confidence            4232211 1233                                                                 445


Q ss_pred             eEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCC
Q 041976          762 TTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHN  841 (901)
Q Consensus       762 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  841 (901)
                      ++|++++|++++.+|..+.  ++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|++|++++|
T Consensus       431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N  507 (562)
T 3a79_B          431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN  507 (562)
T ss_dssp             CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC
T ss_pred             CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC
Confidence            5555555555555444432  68899999999998 56666669999999999999999544444889999999999999


Q ss_pred             cCccCCC
Q 041976          842 RLDGPIP  848 (901)
Q Consensus       842 ~l~g~iP  848 (901)
                      ++.+..|
T Consensus       508 ~~~c~c~  514 (562)
T 3a79_B          508 PWDCTCP  514 (562)
T ss_dssp             CBCCCHH
T ss_pred             CcCCCcc
Confidence            9998665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.5e-39  Score=380.20  Aligned_cols=463  Identities=23%  Similarity=0.200  Sum_probs=328.0

Q ss_pred             CCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCC-ccccCCCCcCEEECCCCCCccCCCccccCCCCCCEE
Q 041976          192 HLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELP-DSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLL  270 (901)
Q Consensus       192 ~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L  270 (901)
                      .+...+++++++| .+++ +|.. ..++|++|++++|.++.++ ..++++++|++|++++|.+.+..|..|.++++|++|
T Consensus        29 ~~~~~~~l~ls~~-~L~~-ip~~-~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  105 (562)
T 3a79_B           29 SNELESMVDYSNR-NLTH-VPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL  105 (562)
T ss_dssp             ----CCEEECTTS-CCCS-CCTT-SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             ccCCCcEEEcCCC-CCcc-CCCC-CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence            3455699999999 8875 6642 2389999999999999887 589999999999999999999889999999999999


Q ss_pred             ECCCCcCCCCCCccccCCCCCCEEEccCCcCcccC-CC-CCCCCCCCEEECCCCCCCCCCCccccCCcCC--cEEECcCC
Q 041976          271 HLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEI-PD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNL--VLIRLNNN  346 (901)
Q Consensus       271 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~L~~n  346 (901)
                      ++++|.++ .+|..  .+++|++|++++|++.+.. |. +.++++|++|++++|.+.+.   .+..+++|  ++|++++|
T Consensus       106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n  179 (562)
T 3a79_B          106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLV  179 (562)
T ss_dssp             ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEES
T ss_pred             ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecc
Confidence            99999998 56665  8999999999999999743 44 88999999999999999864   45555555  99999999


Q ss_pred             cC--cccCChhhcCCCC-CcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCc-----C
Q 041976          347 SF--SGTIPSWLFSLPL-LEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNN-----F  418 (901)
Q Consensus       347 ~l--~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-----l  418 (901)
                      .+  ++..|..+..+.. .-.+++++|.+.+.++..                     .+..+++|+.+++++|.     +
T Consensus       180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~---------------------~~~~l~~L~~L~l~~n~~~~~~l  238 (562)
T 3a79_B          180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM---------------------SVNALGHLQLSNIKLNDENCQRL  238 (562)
T ss_dssp             SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEE---------------------EESSEEEEEEEEEECCSTTHHHH
T ss_pred             cccccccCcccccccCcceEEEEecCccchhhhhhh---------------------cccccceEEEecccccccccchH
Confidence            99  8888887776551 114456666655433322                     22334444444444442     1


Q ss_pred             CCccchhhhhhcCCCcEEEccCCccccccccccC--CCCCCccEEecCCcCCC-CCChhh-----ccCCCCCEEeCCCCc
Q 041976          419 SGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKID--SPFPKFSYLSLSACNIS-AFPRFL-----RTQDELSYLDLSENK  490 (901)
Q Consensus       419 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~~~~L~~L~l~~~~l~-~lp~~l-----~~~~~L~~L~ls~n~  490 (901)
                      .+.  ...+..+++|+.+++.++.+.+.......  ...++|++|++++|.+. .+|..+     ..++.|+.+++..+.
T Consensus       239 ~~~--~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~  316 (562)
T 3a79_B          239 MTF--LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV  316 (562)
T ss_dssp             HHH--HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECC
T ss_pred             HHH--HHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccce
Confidence            111  12345555566565555544321111000  01124444444444443 344433     333444444444444


Q ss_pred             ccccCCh-hhhh-cCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCC-CCCCCCcEEEccCCcccccccccc
Q 041976          491 IDGQIPS-WISE-IGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLP-VPPSSLRVLLISNNQFTGEIIHSI  567 (901)
Q Consensus       491 l~~~~p~-~~~~-~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~  567 (901)
                      +  .+|. ++.. ...                     .++++|++++|.+..... ..+++|++|++++|.+++..|..+
T Consensus       317 ~--~~p~~~~~~~~~~---------------------~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  373 (562)
T 3a79_B          317 F--LFSKEALYSVFAE---------------------MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGC  373 (562)
T ss_dssp             C--SSCHHHHHHHHHT---------------------CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred             e--ecChhhhhhhhcc---------------------CcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhh
Confidence            3  2331 1100 011                     235555555555544332 456889999999999998889999


Q ss_pred             ccCCCCCEEECCCCcCcc--cCCcchhcCCCCccEEECCCCcccccCC-cCccCCCccCEEEccCCcccccCCccccCCC
Q 041976          568 CDIIALDVLDLSNNRLNG--TIPECIGNFSPSLSVLDLRNNRLNGSIP-GTFAESNWLRSLNLNNNELGGAIPQSLVNCT  644 (901)
Q Consensus       568 ~~l~~L~~L~Ls~n~l~~--~~p~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  644 (901)
                      ..+++|++|++++|++++  .+|..+..+. +|++|++++|++++.+| ..|..+++|++|++++|++++..|..+.  +
T Consensus       374 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~  450 (562)
T 3a79_B          374 STLKRLQTLILQRNGLKNFFKVALMTKNMS-SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--P  450 (562)
T ss_dssp             CSCSSCCEEECCSSCCCBTTHHHHTTTTCT-TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--T
T ss_pred             cccCCCCEEECCCCCcCCcccchhhhcCCC-CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--C
Confidence            999999999999999985  3345566766 99999999999998444 5688999999999999999987777664  7


Q ss_pred             cccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHH
Q 041976          645 KVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFL  715 (901)
Q Consensus       645 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  715 (901)
                      +|++|++++|+++. +|..+..+++|++|++++|++++ ++.. .+..+++|+.|++++|++.+..+..++
T Consensus       451 ~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~-l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~  518 (562)
T 3a79_B          451 KVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDG-VFDRLTSLQYIWLHDNPWDCTCPGIRY  518 (562)
T ss_dssp             TCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCC-CCTT-STTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred             cCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCC-CCHH-HHhcCCCCCEEEecCCCcCCCcchHHH
Confidence            99999999999984 66666699999999999999985 4433 347889999999999999998876554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.1e-39  Score=363.41  Aligned_cols=429  Identities=24%  Similarity=0.326  Sum_probs=186.4

Q ss_pred             cccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcC
Q 041976          103 LFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCIL  182 (901)
Q Consensus       103 l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~  182 (901)
                      -...++|++|++++|.+ +. +|+.++++++|++|++++|.+.|.+|..++.+              ++|+++++..|..
T Consensus         7 ~~~~~~L~~L~l~~n~l-~~-iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l--------------~~L~~l~l~~c~~   70 (454)
T 1jl5_A            7 NVSNTFLQEPLRHSSNL-TE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQ--------------REMAVSRLRDCLD   70 (454)
T ss_dssp             -----------------------------CCHHHHHHHHHHHHHTSCTTSCCC--------------HHHHHHHHHHHHH
T ss_pred             ccccccchhhhcccCch-hh-CChhHhcccchhhhhccCCcccccCCcccccc--------------hhcchhhhhhhhc
Confidence            34567888888888888 43 88888888888888888888888888888877              6666666655532


Q ss_pred             CCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCcccc
Q 041976          183 QGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLG  262 (901)
Q Consensus       183 ~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~  262 (901)
                                 .++++|++++| .+++ +|.  ..++|++|++++|.++.+|+.   +++|++|++++|.+.+ +|..  
T Consensus        71 -----------~~l~~L~l~~~-~l~~-lp~--~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~-l~~~--  129 (454)
T 1jl5_A           71 -----------RQAHELELNNL-GLSS-LPE--LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKA-LSDL--  129 (454)
T ss_dssp             -----------HTCSEEECTTS-CCSC-CCS--CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CCSC--
T ss_pred             -----------cCCCEEEecCC-cccc-CCC--CcCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCc-ccCC--
Confidence                       34566666666 4443 222  124555555555555555542   2456666666665553 2211  


Q ss_pred             CCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEE
Q 041976          263 NLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIR  342 (901)
Q Consensus       263 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  342 (901)
                       .++|++|++++|.+++ +| .++++++|++|++++|++++                        +|..+   .+|++|+
T Consensus       130 -~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~------------------------lp~~~---~~L~~L~  179 (454)
T 1jl5_A          130 -PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK------------------------LPDLP---PSLEFIA  179 (454)
T ss_dssp             -CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC------------------------CCCCC---TTCCEEE
T ss_pred             -CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc------------------------cCCCc---ccccEEE
Confidence             1455555555555553 44 35555555555555555543                        22221   2444555


Q ss_pred             CcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCcc
Q 041976          343 LNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIA  422 (901)
Q Consensus       343 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  422 (901)
                      +++|.+++ +| .++.+++|++|++++|++.+... . .++|++|++++|.++ .+| .++.+++|++|++++|++++..
T Consensus       180 L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~-~-~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~  253 (454)
T 1jl5_A          180 AGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD-L-PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLP  253 (454)
T ss_dssp             CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC-C-CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCC
T ss_pred             CcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC-C-cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCccc
Confidence            55554443 23 34455555555555555443211 1 135666666666655 444 3566666666666666666542


Q ss_pred             chhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhc
Q 041976          423 EPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEI  502 (901)
Q Consensus       423 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~  502 (901)
                      .     ..++|++|++++|.++                         .+|..   .++|++|++++|++++. |.     
T Consensus       254 ~-----~~~~L~~L~l~~N~l~-------------------------~l~~~---~~~L~~L~ls~N~l~~l-~~-----  294 (454)
T 1jl5_A          254 D-----LPPSLEALNVRDNYLT-------------------------DLPEL---PQSLTFLDVSENIFSGL-SE-----  294 (454)
T ss_dssp             S-----CCTTCCEEECCSSCCS-------------------------CCCCC---CTTCCEEECCSSCCSEE-SC-----
T ss_pred             c-----cccccCEEECCCCccc-------------------------ccCcc---cCcCCEEECcCCccCcc-cC-----
Confidence            1     1245555555555444                         33321   13444555555544431 10     


Q ss_pred             CCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCc
Q 041976          503 GKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNR  582 (901)
Q Consensus       503 ~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  582 (901)
                      ..++|+.|++++|.++++... .++|++|++++|++.+ +|..+++|++|++++|++++ +|.   .+++|++|++++|+
T Consensus       295 ~~~~L~~L~l~~N~l~~i~~~-~~~L~~L~Ls~N~l~~-lp~~~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~  368 (454)
T 1jl5_A          295 LPPNLYYLNASSNEIRSLCDL-PPSLEELNVSNNKLIE-LPALPPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNP  368 (454)
T ss_dssp             CCTTCCEEECCSSCCSEECCC-CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred             cCCcCCEEECcCCcCCcccCC-cCcCCEEECCCCcccc-ccccCCcCCEEECCCCcccc-ccc---hhhhccEEECCCCC
Confidence            013455555555555443321 1355666666666554 34445677777777777774 343   35677788888887


Q ss_pred             Ccc--cCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccc--cCCccccCCCcccEEeCCCCcCcc
Q 041976          583 LNG--TIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGG--AIPQSLVNCTKVEVLDIGNIKIND  658 (901)
Q Consensus       583 l~~--~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~l~~n~l~~  658 (901)
                      +++  .+|..+       ..|  +.|.+.+.+|..   +++|++|++++|++++  .+|.      +++.|.+.+|.+.+
T Consensus       369 l~~l~~ip~~l-------~~L--~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~  430 (454)
T 1jl5_A          369 LREFPDIPESV-------EDL--RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVD  430 (454)
T ss_dssp             CSSCCCCCTTC-------CEE--ECCC-----------------------------------------------------
T ss_pred             CCcCCCChHHH-------Hhh--hhcccccccccc---cCcCCEEECCCCcCCccccchh------hHhheeCcCcccCC
Confidence            775  444433       222  235555555542   4778899999999886  5553      45667788888888


Q ss_pred             CccccccCC
Q 041976          659 AFPYWLGNL  667 (901)
Q Consensus       659 ~~~~~l~~l  667 (901)
                      ..+.+....
T Consensus       431 ~~~~~~~~~  439 (454)
T 1jl5_A          431 PYEFAHETT  439 (454)
T ss_dssp             ---------
T ss_pred             ccccCHHHh
Confidence            777665544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=6.2e-38  Score=353.76  Aligned_cols=300  Identities=23%  Similarity=0.292  Sum_probs=171.7

Q ss_pred             CeEEEEEcCCCCCCCCCCCCcccccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCccccccccccc
Q 041976           81 GNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTV  160 (901)
Q Consensus        81 ~~v~~l~L~~~~~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~  160 (901)
                      .++++++++++.+ |.+|+  +++++++|++|++++|.+.+. +|..++++++|+++++++|..                
T Consensus        11 ~~L~~L~l~~n~l-~~iP~--~i~~L~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~l~l~~c~~----------------   70 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPV--EAENVKSKTEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLD----------------   70 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHT-SCTTSCCCHHHHHHHHHHHHH----------------
T ss_pred             ccchhhhcccCch-hhCCh--hHhcccchhhhhccCCccccc-CCcccccchhcchhhhhhhhc----------------
Confidence            5789999999999 89998  899999999999999999887 999999999886665555431                


Q ss_pred             chhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCC
Q 041976          161 VLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNL  240 (901)
Q Consensus       161 ~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l  240 (901)
                               .++++|++++|.+++ +|..   .++|++|++++| .+++ +|.  ..++|++|++++|.++.+|...   
T Consensus        71 ---------~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n-~l~~-lp~--~~~~L~~L~l~~n~l~~l~~~~---  130 (454)
T 1jl5_A           71 ---------RQAHELELNNLGLSS-LPEL---PPHLESLVASCN-SLTE-LPE--LPQSLKSLLVDNNNLKALSDLP---  130 (454)
T ss_dssp             ---------HTCSEEECTTSCCSC-CCSC---CTTCSEEECCSS-CCSS-CCC--CCTTCCEEECCSSCCSCCCSCC---
T ss_pred             ---------cCCCEEEecCCcccc-CCCC---cCCCCEEEccCC-cCCc-ccc--ccCCCcEEECCCCccCcccCCC---
Confidence                     345666666665554 2221   245666666666 5554 442  2356666666666666554321   


Q ss_pred             CCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECC
Q 041976          241 KLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLS  320 (901)
Q Consensus       241 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~  320 (901)
                      ++|++|++++|.+.+ +| +++++++|++|++++|.+++ +|..+   .+|++|++++|++++ +|.+.++++|++|+++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LPELQNLPFLTAIYAD  203 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CCCCTTCTTCCEEECC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-CccccCCCCCCEEECC
Confidence            567777777777764 55 46777777777777777664 44432   367777777777765 4456677777777777


Q ss_pred             CCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCch
Q 041976          321 NNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPS  400 (901)
Q Consensus       321 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~  400 (901)
                      +|.+++ +|...   ++|++|++++|.++ .+|. ++.+++|++|++++|++.+...  ..++|+.|++++|.+++ +|.
T Consensus       204 ~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N~l~~-l~~  274 (454)
T 1jl5_A          204 NNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDNYLTD-LPE  274 (454)
T ss_dssp             SSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSSCCSC-CCC
T ss_pred             CCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCcccc--cccccCEEECCCCcccc-cCc
Confidence            777664 33322   46777777777776 4553 6677777777777777664222  23566666666666654 332


Q ss_pred             hhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccc
Q 041976          401 SIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS  444 (901)
Q Consensus       401 ~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~  444 (901)
                      .   .++|+.|++++|.+++...     -.++|++|++++|.++
T Consensus       275 ~---~~~L~~L~ls~N~l~~l~~-----~~~~L~~L~l~~N~l~  310 (454)
T 1jl5_A          275 L---PQSLTFLDVSENIFSGLSE-----LPPNLYYLNASSNEIR  310 (454)
T ss_dssp             C---CTTCCEEECCSSCCSEESC-----CCTTCCEEECCSSCCS
T ss_pred             c---cCcCCEEECcCCccCcccC-----cCCcCCEEECcCCcCC
Confidence            2   2456666666666655311     0134555555555444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.3e-36  Score=346.44  Aligned_cols=381  Identities=20%  Similarity=0.233  Sum_probs=220.6

Q ss_pred             ceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCC-CccccCCCCCCEEEccCC
Q 041976          221 EYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHI-PSSLSNLVQLTYLDLSSN  299 (901)
Q Consensus       221 ~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n  299 (901)
                      +.++.++++++.+|. +.  ++|++|++++|.+.+..|..++++++|++|++++|.+.+.+ +..|.++++|++|++++|
T Consensus        13 ~~~~c~~~~l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   89 (455)
T 3v47_A           13 YNAICINRGLHQVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN   89 (455)
T ss_dssp             TEEECCSSCCSSCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred             cccCcCCCCcccCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence            345566666666665 22  56777777777776666666777777777777777665433 445666777777777777


Q ss_pred             cCcccCCC-CCCCCCCCEEECCCCCCCCCCCcc--ccCCcCCcEEECcCCcCcccCChh-hcCCCCCcEEEccCCccccc
Q 041976          300 SFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSH--GSRLQNLVLIRLNNNSFSGTIPSW-LFSLPLLEYVRLSDNQLSGH  375 (901)
Q Consensus       300 ~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~  375 (901)
                      .+++..|. +.++++|++|++++|.+++..+..  ++.+++|++|++++|.+++..|.. +..+++|++|++++|.+.+.
T Consensus        90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A           90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence            76666554 666677777777777666544333  666677777777777766665554 56666666666666666554


Q ss_pred             cCCC----CCCCCCEEEccCccCCCCCchhh--------hcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCcc
Q 041976          376 IDEF----PSKSLQNIYLSNNRLQGSIPSSI--------FELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSL  443 (901)
Q Consensus       376 ~~~~----~~~~L~~L~L~~n~l~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l  443 (901)
                      .+..    ...+++.|++++|.+.+..+..+        ..+++|++|++++|.+.+..+ ..+...             
T Consensus       170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~~-------------  235 (455)
T 3v47_A          170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA-KRFFDA-------------  235 (455)
T ss_dssp             CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH-HHHHHH-------------
T ss_pred             ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccch-hhhhcc-------------
Confidence            4332    12345555555555543322221        123344444444444443322 112111             


Q ss_pred             ccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccC
Q 041976          444 SLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQI  523 (901)
Q Consensus       444 ~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~  523 (901)
                                                      ...++|+.|++++|...+....                .+.+      
T Consensus       236 --------------------------------~~~~~L~~L~l~~~~~~~~~~~----------------~~~~------  261 (455)
T 3v47_A          236 --------------------------------IAGTKIQSLILSNSYNMGSSFG----------------HTNF------  261 (455)
T ss_dssp             --------------------------------TTTCCEEEEECTTCTTTSCCTT----------------CCSS------
T ss_pred             --------------------------------ccccceeeEeeccccccccccc----------------hhhh------
Confidence                                            0113344444444433221000                0000      


Q ss_pred             CCCCCceeeccCccccCCCCCCCCCCcEEEccCCccccccccccc--cCCCCCEEECCCCcCcccCCcchhcCCCCccEE
Q 041976          524 PWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSIC--DIIALDVLDLSNNRLNGTIPECIGNFSPSLSVL  601 (901)
Q Consensus       524 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L  601 (901)
                                                          .+..+..+.  ..++|++|++++|.+.+..|..+..+. +|++|
T Consensus       262 ------------------------------------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L  304 (455)
T 3v47_A          262 ------------------------------------KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQL  304 (455)
T ss_dssp             ------------------------------------CCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-TCCEE
T ss_pred             ------------------------------------ccCcccccccccccCceEEEecCccccccchhhcccCC-CCCEE
Confidence                                                000000111  124566666666666655555555554 66666


Q ss_pred             ECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCc
Q 041976          602 DLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFH  681 (901)
Q Consensus       602 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~  681 (901)
                      ++++|++++..|..|..+++|++|++++|++++..|..|..+++|++|++++|++++..|.++..+++|++|++++|++.
T Consensus       305 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  384 (455)
T 3v47_A          305 TLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK  384 (455)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc
Confidence            66666666666666666677777777777776666666777777777777777777666767777777777777777776


Q ss_pred             ccCCCCCCCCCCCCCcEEEcCCCccccCCc
Q 041976          682 GSVREFEPKESFPKLRILDLSINNFSGYLP  711 (901)
Q Consensus       682 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p  711 (901)
                      +..+..  +..+++|++|++++|++++.+|
T Consensus       385 ~~~~~~--~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          385 SVPDGI--FDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCCTTT--TTTCTTCCEEECCSSCBCCCTT
T ss_pred             cCCHhH--hccCCcccEEEccCCCcccCCC
Confidence            544332  2567777888888888887777

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.3e-36  Score=341.39  Aligned_cols=389  Identities=19%  Similarity=0.215  Sum_probs=270.5

Q ss_pred             CEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC--CCCCCCCCEEECCC
Q 041976          244 GRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD--IFNLTQVSFFDLSN  321 (901)
Q Consensus       244 ~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~--~~~l~~L~~L~l~~  321 (901)
                      +.++.+++.++ .+|. +.  ++|++|++++|.+++..|..|+++++|++|++++|.+.+.++.  +.++++|++|++++
T Consensus        13 ~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            45666666665 4554 22  6788888888888877777888888888888888877654433  67777788888887


Q ss_pred             CCCCCCCCccccCCcCCcEEECcCCcCcccCChh--hcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCc
Q 041976          322 NQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSW--LFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIP  399 (901)
Q Consensus       322 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~  399 (901)
                      |.+++..|..++++++|++|++++|.+++..+..  +..+++|++|++++|.+.+                      ..|
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~----------------------~~~  146 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK----------------------IQP  146 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS----------------------CCC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc----------------------cCc
Confidence            7777666777777777777777777776644433  6666666666666665554                      333


Q ss_pred             hh-hhcccccCceecccCcCCCccchhhhhhc--CCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhc
Q 041976          400 SS-IFELVNLTDLQLDSNNFSGIAEPYMFAKL--IKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLR  476 (901)
Q Consensus       400 ~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~  476 (901)
                      .. +..+++|++|++++|.+++..+ ..+..+  .+|+.|++++|.+.......+..                .....+.
T Consensus       147 ~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~----------------~~~~~~~  209 (455)
T 3v47_A          147 ASFFLNMRRFHVLDLTFNKVKSICE-EDLLNFQGKHFTLLRLSSITLQDMNEYWLGW----------------EKCGNPF  209 (455)
T ss_dssp             CGGGGGCTTCCEEECTTCCBSCCCT-TTSGGGTTCEEEEEECTTCBCTTCSTTCTTH----------------HHHCCTT
T ss_pred             ccccCCCCcccEEeCCCCcccccCh-hhhhccccccccccccccCcccccchhhccc----------------ccccccc
Confidence            33 5556666666666666655543 333333  34455555555443222111000                0001133


Q ss_pred             cCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccC
Q 041976          477 TQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISN  556 (901)
Q Consensus       477 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~  556 (901)
                      .+++|++|++++|++.+..|..+.....                                         ..+++.|++++
T Consensus       210 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~-----------------------------------------~~~L~~L~l~~  248 (455)
T 3v47_A          210 KNTSITTLDLSGNGFKESMAKRFFDAIA-----------------------------------------GTKIQSLILSN  248 (455)
T ss_dssp             TTCEEEEEECTTSCCCHHHHHHHHHHTT-----------------------------------------TCCEEEEECTT
T ss_pred             ccceeeeEecCCCcccccchhhhhcccc-----------------------------------------ccceeeEeecc
Confidence            4567888899998888877776632110                                         12344455555


Q ss_pred             CccccccccccccCCCCCEEECCCCcCcccCCcchhcC-CCCccEEECCCCcccccCCcCccCCCccCEEEccCCccccc
Q 041976          557 NQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNF-SPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGA  635 (901)
Q Consensus       557 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  635 (901)
                      |.+.+..              +..+.+.+..+..+..+ .++|++|++++|.+++..|..|..+++|++|++++|++++.
T Consensus       249 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  314 (455)
T 3v47_A          249 SYNMGSS--------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI  314 (455)
T ss_dssp             CTTTSCC--------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             ccccccc--------------cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence            5443321              11222222222222222 14899999999999999999999999999999999999999


Q ss_pred             CCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHH
Q 041976          636 IPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFL  715 (901)
Q Consensus       636 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  715 (901)
                      .|..|.++++|++|++++|++.+..|..+..+++|++|++++|++.+..+...  ..+++|++|++++|++++ +|...+
T Consensus       315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~-~~~~~~  391 (455)
T 3v47_A          315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF--LGLPNLKELALDTNQLKS-VPDGIF  391 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCSC-CCTTTT
T ss_pred             ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhc--cccccccEEECCCCcccc-CCHhHh
Confidence            99999999999999999999999999999999999999999999988766554  779999999999999996 555567


Q ss_pred             HhhHhhhcccccCCcccc
Q 041976          716 ENLNAMRNVSADEGKLRY  733 (901)
Q Consensus       716 ~~l~~L~~l~l~~~~~~~  733 (901)
                      ..+++|+.+++++|.+..
T Consensus       392 ~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          392 DRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             TTCTTCCEEECCSSCBCC
T ss_pred             ccCCcccEEEccCCCccc
Confidence            889999999999998754

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=9.7e-36  Score=336.12  Aligned_cols=267  Identities=19%  Similarity=0.222  Sum_probs=204.2

Q ss_pred             ccccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCc
Q 041976          102 SLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCI  181 (901)
Q Consensus       102 ~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~  181 (901)
                      .+.++++|++|++++|.+++  +| .++.+++|++|+|++|.+++ +|  ++.+              ++|++|++++|.
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l--------------~~L~~L~Ls~N~   96 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQN--------------TNLTYLACDSNK   96 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTC--------------TTCSEEECCSSC
T ss_pred             ChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccC--------------CCCCEEECcCCC
Confidence            67788999999999999887  45 68899999999999999886 44  7777              899999999998


Q ss_pred             CCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccc
Q 041976          182 LQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASL  261 (901)
Q Consensus       182 ~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l  261 (901)
                      +++. +  ++++++|++|++++| .+++ +| +..+++|++|++++|.++.++  ++.+++|++|++++|...+.+  .+
T Consensus        97 l~~~-~--~~~l~~L~~L~L~~N-~l~~-l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~  166 (457)
T 3bz5_A           97 LTNL-D--VTPLTKLTYLNCDTN-KLTK-LD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DV  166 (457)
T ss_dssp             CSCC-C--CTTCTTCCEEECCSS-CCSC-CC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CC
T ss_pred             Ccee-e--cCCCCcCCEEECCCC-cCCe-ec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--cc
Confidence            8874 3  888899999999998 7776 34 677888888888888888774  778888888888888665555  47


Q ss_pred             cCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEE
Q 041976          262 GNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLI  341 (901)
Q Consensus       262 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  341 (901)
                      +.+++|++|++++|.+++ +|  ++.+++|++|++++|.+++.  .+..+++|++|++++|++++ +|  ++.+++|++|
T Consensus       167 ~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L  238 (457)
T 3bz5_A          167 TPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYF  238 (457)
T ss_dssp             TTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEE
T ss_pred             ccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEE
Confidence            778888888888888875 34  77788888888888888765  37777888888888888876 45  7777888888


Q ss_pred             ECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCc
Q 041976          342 RLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGI  421 (901)
Q Consensus       342 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  421 (901)
                      ++++|.+++..   ++.+++|+.|+++.|            +|+.|++++|.+.+.+|  ++.+++|+.|++++|...+.
T Consensus       239 ~l~~N~l~~~~---~~~l~~L~~L~l~~n------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~  301 (457)
T 3bz5_A          239 DCSVNPLTELD---VSTLSKLTTLHCIQT------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYL  301 (457)
T ss_dssp             ECCSSCCSCCC---CTTCTTCCEEECTTC------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCE
T ss_pred             EeeCCcCCCcC---HHHCCCCCEEeccCC------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccce
Confidence            88888887643   445677777777664            34566677776666555  35667777777777765554


Q ss_pred             cc
Q 041976          422 AE  423 (901)
Q Consensus       422 ~~  423 (901)
                      .+
T Consensus       302 l~  303 (457)
T 3bz5_A          302 LD  303 (457)
T ss_dssp             EE
T ss_pred             ec
Confidence            33

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.8e-36  Score=339.42  Aligned_cols=361  Identities=20%  Similarity=0.196  Sum_probs=216.4

Q ss_pred             cccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCC
Q 041976          236 SIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVS  315 (901)
Q Consensus       236 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~  315 (901)
                      .++++++|++|++++|.+.+. | .++.+++|++|++++|.+++. |  ++.+++|++|++++|.+++. + +.++++|+
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~  109 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D-VTPLTKLT  109 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C-CTTCTTCC
T ss_pred             ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e-cCCCCcCC
Confidence            455666666666666666643 3 466666666666666666643 2  56666666666666666653 2 55666666


Q ss_pred             EEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCC
Q 041976          316 FFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQ  395 (901)
Q Consensus       316 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~  395 (901)
                      +|++++|++++ ++  ++.+++|++|++++|.+++. +  ++.+++|++|++++|...+.++                  
T Consensus       110 ~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~------------------  165 (457)
T 3bz5_A          110 YLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD------------------  165 (457)
T ss_dssp             EEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC------------------
T ss_pred             EEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc------------------
Confidence            66666666654 22  55566666666666665542 1  4555555555555554333332                  


Q ss_pred             CCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhh
Q 041976          396 GSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFL  475 (901)
Q Consensus       396 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l  475 (901)
                            +..+++|+.|++++|+++++.    +..+++|++|++++|.++...    ...+++|++|++++|+++.+|  +
T Consensus       166 ------~~~l~~L~~L~ls~n~l~~l~----l~~l~~L~~L~l~~N~l~~~~----l~~l~~L~~L~Ls~N~l~~ip--~  229 (457)
T 3bz5_A          166 ------VTPQTQLTTLDCSFNKITELD----VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNKLTEID--V  229 (457)
T ss_dssp             ------CTTCTTCCEEECCSSCCCCCC----CTTCTTCCEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC--C
T ss_pred             ------cccCCcCCEEECCCCccceec----cccCCCCCEEECcCCcCCeec----cccCCCCCEEECcCCcccccC--c
Confidence                  334444555555555444431    344444555555554444321    113344444444444444444  4


Q ss_pred             ccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEcc
Q 041976          476 RTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLIS  555 (901)
Q Consensus       476 ~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~  555 (901)
                      ..+++|+.|++++|++++                          ++...+++|+.|+++.|           +|+.|+++
T Consensus       230 ~~l~~L~~L~l~~N~l~~--------------------------~~~~~l~~L~~L~l~~n-----------~L~~L~l~  272 (457)
T 3bz5_A          230 TPLTQLTYFDCSVNPLTE--------------------------LDVSTLSKLTTLHCIQT-----------DLLEIDLT  272 (457)
T ss_dssp             TTCTTCSEEECCSSCCSC--------------------------CCCTTCTTCCEEECTTC-----------CCSCCCCT
T ss_pred             cccCCCCEEEeeCCcCCC--------------------------cCHHHCCCCCEEeccCC-----------CCCEEECC
Confidence            445555555555555544                          33333344444444433           34556667


Q ss_pred             CCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCccccc
Q 041976          556 NNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGA  635 (901)
Q Consensus       556 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  635 (901)
                      +|.+.+.+|  +..+++|+.|++++|...+.+|..   . ++|+.|++++|             ++|++|++++|++++.
T Consensus       273 ~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~---~-~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l  333 (457)
T 3bz5_A          273 HNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ---A-AGITELDLSQN-------------PKLVYLYLNNTELTEL  333 (457)
T ss_dssp             TCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT---T-CCCSCCCCTTC-------------TTCCEEECTTCCCSCC
T ss_pred             CCccCCccc--ccccccCCEEECCCCcccceeccC---C-CcceEechhhc-------------ccCCEEECCCCccccc
Confidence            777666665  456788888888888877776642   2 25666665554             5788899999998874


Q ss_pred             CCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHH
Q 041976          636 IPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFL  715 (901)
Q Consensus       636 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  715 (901)
                         .+..+++|++|++++|++++        ++.|..|++++|.+.|.       ..+..|+.+++++|+++|.+|..++
T Consensus       334 ---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-------~~~~~l~~l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          334 ---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-------GQTITMPKETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             ---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-------EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred             ---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-------ceeeecCccccccCcEEEEcChhHh
Confidence               38888899999999998876        35667777888888765       2345678889999999999997664


Q ss_pred             Hh
Q 041976          716 EN  717 (901)
Q Consensus       716 ~~  717 (901)
                      ..
T Consensus       396 ~~  397 (457)
T 3bz5_A          396 DQ  397 (457)
T ss_dssp             CT
T ss_pred             cc
Confidence            43

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.3e-33  Score=319.73  Aligned_cols=349  Identities=26%  Similarity=0.316  Sum_probs=215.9

Q ss_pred             ccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCC
Q 041976          104 FHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQ  183 (901)
Q Consensus       104 ~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~  183 (901)
                      ..++++++|+++++.+..  +|. +..+++|++|+|++|.+.+. |. ++.+              ++|++|++++|.+.
T Consensus        43 ~~l~~l~~L~l~~~~i~~--l~~-~~~l~~L~~L~Ls~n~l~~~-~~-~~~l--------------~~L~~L~l~~n~l~  103 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKS--IDG-VEYLNNLTQINFSNNQLTDI-TP-LKNL--------------TKLVDILMNNNQIA  103 (466)
T ss_dssp             HHHHTCCEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCCC-GG-GTTC--------------TTCCEEECCSSCCC
T ss_pred             hHhccccEEecCCCCCcc--Ccc-hhhhcCCCEEECCCCccCCc-hh-hhcc--------------ccCCEEECCCCccc
Confidence            346677777777777655  443 66777777777777777643 32 6666              77777777777776


Q ss_pred             CCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccC
Q 041976          184 GNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGN  263 (901)
Q Consensus       184 ~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~  263 (901)
                      +..+  ++++++|++|++++| .+.+. +.+..+++|++|++++|.+..++ .++.+++|++|+++ +.+.+.  ..+.+
T Consensus       104 ~~~~--~~~l~~L~~L~L~~n-~l~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~-~~~~~~--~~~~~  175 (466)
T 1o6v_A          104 DITP--LANLTNLTGLTLFNN-QITDI-DPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG-NQVTDL--KPLAN  175 (466)
T ss_dssp             CCGG--GTTCTTCCEEECCSS-CCCCC-GGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEE-ESCCCC--GGGTT
T ss_pred             cChh--hcCCCCCCEEECCCC-CCCCC-hHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecC-CcccCc--hhhcc
Confidence            5544  777777777777777 55543 23566667777777777766664 36777777777775 334332  23667


Q ss_pred             CCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEEC
Q 041976          264 LTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRL  343 (901)
Q Consensus       264 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  343 (901)
                      +++|++|++++|.+++.  ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+.  ..+..+++|++|++
T Consensus       176 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l  250 (466)
T 1o6v_A          176 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL  250 (466)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred             CCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEEC
Confidence            77777777777776643  236677777777777777765444 55667777777777776642  34666677777777


Q ss_pred             cCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccc
Q 041976          344 NNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAE  423 (901)
Q Consensus       344 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  423 (901)
                      ++|.+++..+  +..+++|++|++++|.+.+..+...+++|+.|++++|++++..+  +..+++|+.|++++|++++..+
T Consensus       251 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~  326 (466)
T 1o6v_A          251 ANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP  326 (466)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred             CCCccccchh--hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence            7777665433  66666666666666666654443355566666666666554322  5556666666666666655532


Q ss_pred             hhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcC
Q 041976          424 PYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIG  503 (901)
Q Consensus       424 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~  503 (901)
                         +..+++|++|++++|.++                         .+ ..+..+++|++|++++|++.+..|  +  ..
T Consensus       327 ---~~~l~~L~~L~l~~n~l~-------------------------~~-~~l~~l~~L~~L~l~~n~l~~~~~--~--~~  373 (466)
T 1o6v_A          327 ---VSSLTKLQRLFFYNNKVS-------------------------DV-SSLANLTNINWLSAGHNQISDLTP--L--AN  373 (466)
T ss_dssp             ---GGGCTTCCEEECCSSCCC-------------------------CC-GGGTTCTTCCEEECCSSCCCBCGG--G--TT
T ss_pred             ---hccCccCCEeECCCCccC-------------------------Cc-hhhccCCCCCEEeCCCCccCccch--h--hc
Confidence               445555555555555544                         33 234455556666666666655444  2  44


Q ss_pred             CCCccEEEcCCCccCCcc
Q 041976          504 KDSLSYVNLSHNFITKMK  521 (901)
Q Consensus       504 ~~~L~~L~ls~n~l~~~~  521 (901)
                      +++|+.|++++|.+++.+
T Consensus       374 l~~L~~L~l~~n~~~~~p  391 (466)
T 1o6v_A          374 LTRITQLGLNDQAWTNAP  391 (466)
T ss_dssp             CTTCCEEECCCEEEECCC
T ss_pred             CCCCCEEeccCCcccCCc
Confidence            556666666666665543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.4e-33  Score=318.34  Aligned_cols=146  Identities=24%  Similarity=0.359  Sum_probs=71.7

Q ss_pred             CCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEEC
Q 041976          193 LPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHL  272 (901)
Q Consensus       193 l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L  272 (901)
                      +++++.|+++++ .+. .+|.+..+++|++|++++|.++.+|. ++.+++|++|++++|.+.+..+  ++++++|++|++
T Consensus        45 l~~l~~L~l~~~-~i~-~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L  119 (466)
T 1o6v_A           45 LDQVTTLQADRL-GIK-SIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL  119 (466)
T ss_dssp             HHTCCEEECCSS-CCC-CCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             hccccEEecCCC-CCc-cCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence            456666666666 433 24444455555555555555555544 5555555555555555553322  555555555555


Q ss_pred             CCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCc
Q 041976          273 MHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFS  349 (901)
Q Consensus       273 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  349 (901)
                      ++|.+++..+  +..+++|++|++++|.+.+ ++.+..+++|++|+++ +.+.+..  .++.+++|++|++++|.++
T Consensus       120 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~  190 (466)
T 1o6v_A          120 FNNQITDIDP--LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS  190 (466)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCCChH--HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence            5555543321  4555555555555555443 2234444555555543 2222111  1444444444444444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.2e-34  Score=328.40  Aligned_cols=347  Identities=19%  Similarity=0.189  Sum_probs=263.7

Q ss_pred             cEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccc
Q 041976          459 SYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLL  538 (901)
Q Consensus       459 ~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l  538 (901)
                      +.++.++++++.+|..+  .+.++.|++++|++.+..+..|  ..+++|++|++++|.++.+....|.+           
T Consensus        14 ~~v~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~~-----------   78 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEF--ASFPHLEELELNENIVSAVEPGAFNN-----------   78 (477)
T ss_dssp             TEEECCSCCCSSCCSCC--CTTCSEEECCSSCCCEECTTTT--TTCTTCCEEECTTSCCCEECTTTTTT-----------
T ss_pred             CEEEeCCCCcCcCCCCC--CCCCcEEECCCCccceECHhHc--cCCCCCCEEECCCCccCEeChhhhhC-----------
Confidence            35566666666666543  2467777777777776666666  45566666666666665554433322           


Q ss_pred             cCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccC
Q 041976          539 QGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAE  618 (901)
Q Consensus       539 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  618 (901)
                             +++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..+..+. +|++|++++|.+++..+..|..
T Consensus        79 -------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~  150 (477)
T 2id5_A           79 -------LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDLVYISHRAFSG  150 (477)
T ss_dssp             -------CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEEECCTTCCEECTTSSTT
T ss_pred             -------CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc-cCCEEECCCCccceeChhhccC
Confidence                   35677777777777766666778888899999999988877777777776 8999999999988888888889


Q ss_pred             CCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcE
Q 041976          619 SNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRI  698 (901)
Q Consensus       619 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~  698 (901)
                      +++|++|++++|++++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++.+.++...  ....+|+.
T Consensus       151 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~  228 (477)
T 2id5_A          151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTS  228 (477)
T ss_dssp             CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT--TTTCCCSE
T ss_pred             CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc--ccCccccE
Confidence            9999999999999887777778889999999999999988888888889999999999988877666544  33458999


Q ss_pred             EEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchh
Q 041976          699 LDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQV  778 (901)
Q Consensus       699 L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  778 (901)
                      |++++|.+++ +|...+.                                        .+++|+.|+|++|.+++..+..
T Consensus       229 L~l~~n~l~~-~~~~~~~----------------------------------------~l~~L~~L~Ls~n~l~~~~~~~  267 (477)
T 2id5_A          229 LSITHCNLTA-VPYLAVR----------------------------------------HLVYLRFLNLSYNPISTIEGSM  267 (477)
T ss_dssp             EEEESSCCCS-CCHHHHT----------------------------------------TCTTCCEEECCSSCCCEECTTS
T ss_pred             EECcCCcccc-cCHHHhc----------------------------------------CccccCeeECCCCcCCccChhh
Confidence            9999998874 4533322                                        1567889999999999888888


Q ss_pred             hhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCCCCCCCCccc
Q 041976          779 IGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQE  858 (901)
Q Consensus       779 l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~~~~~  858 (901)
                      |.++++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|+|++|++.+.-+....+.....
T Consensus       268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~  347 (477)
T 2id5_A          268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWR  347 (477)
T ss_dssp             CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTS
T ss_pred             ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhc
Confidence            99999999999999999999899999999999999999999988888889999999999999998864321111111222


Q ss_pred             ccccCCcCCCCCC
Q 041976          859 DSYIGNLGLCGFP  871 (901)
Q Consensus       859 ~~~~~n~~lcg~~  871 (901)
                      ..+.++...|+.|
T Consensus       348 ~~~~~~~~~C~~p  360 (477)
T 2id5_A          348 LNFNRQQPTCATP  360 (477)
T ss_dssp             SCCTTCCCBEEES
T ss_pred             cccCccCceeCCc
Confidence            3445555566443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.2e-32  Score=304.33  Aligned_cols=351  Identities=18%  Similarity=0.183  Sum_probs=272.9

Q ss_pred             cCCCCCCCCCCcC-ccceeecCCCCeEEEEEcCCCCCCCCCCCCcccccCccCceEeCCCCCCCCCcCCcc-ccCCCCCc
Q 041976           58 KMISWKKDTNCCS-WDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSG-FSRFRNLT  135 (901)
Q Consensus        58 ~l~~w~~~~~~c~-w~gv~c~~~~~~v~~l~L~~~~~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~-l~~l~~L~  135 (901)
                      .+++|..+.+||. |.+..|....-+|     ...........  .-..++++++|+++++.+..  +|.. +..+++|+
T Consensus         2 ~~~~~~~~~~C~~~~~~~~c~~~~~~i-----~~~~~~~~~~~--~~~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~   72 (390)
T 3o6n_A            2 NVKPRQPEYKCIDSNLQYDCVFYDVHI-----DMQTQDVYFGF--EDITLNNQKIVTFKNSTMRK--LPAALLDSFRQVE   72 (390)
T ss_dssp             -----CCEECBCC------EEEESCEE-----CSSCCCCEESC--SSGGGCCCSEEEEESCEESE--ECTHHHHHCCCCS
T ss_pred             CcCCCCCccceehhhhhhccceeeeee-----ecccccccccc--cccccCCceEEEecCCchhh--CChhHhcccccCc
Confidence            4678998888875 6666564222222     22111111111  33467899999999999877  5654 78999999


Q ss_pred             eeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCC-C
Q 041976          136 HFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPA-N  214 (901)
Q Consensus       136 ~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~-~  214 (901)
                      +|+|++|.+.+..|..++.+              ++|++|++++|.+.+..|..++++++|++|++++| .++...+. +
T Consensus        73 ~L~L~~n~i~~~~~~~~~~l--------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~  137 (390)
T 3o6n_A           73 LLNLNDLQIEEIDTYAFAYA--------------HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIF  137 (390)
T ss_dssp             EEECTTSCCCEECTTTTTTC--------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred             EEECCCCcccccChhhccCC--------------CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHh
Confidence            99999999987777788888              99999999999999988889999999999999999 77744443 4


Q ss_pred             CCCCCcceeecCCCCCccCC-ccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCE
Q 041976          215 NWTSPIEYLDVSETSFSELP-DSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTY  293 (901)
Q Consensus       215 ~~~~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  293 (901)
                      ..+++|++|++++|.+..++ ..++.+++|++|++++|.+.+.   .+..+++|++|++++|.+++     +....+|++
T Consensus       138 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~  209 (390)
T 3o6n_A          138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEE  209 (390)
T ss_dssp             TTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSE
T ss_pred             cCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceE
Confidence            78899999999999999775 4688999999999999998864   36678899999999998774     344568999


Q ss_pred             EEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccc
Q 041976          294 LDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLS  373 (901)
Q Consensus       294 L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  373 (901)
                      |++++|.+......  ..++|++|++++|.+++.  ..+..+++|++|++++|.+++..|..+..+++|++|++++|+++
T Consensus       210 L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  285 (390)
T 3o6n_A          210 LDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV  285 (390)
T ss_dssp             EECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC
T ss_pred             EECCCCeeeecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc
Confidence            99999998865433  347899999999999853  67889999999999999999888999999999999999999988


Q ss_pred             cccCCC-CCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCcccccccc
Q 041976          374 GHIDEF-PSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTF  449 (901)
Q Consensus       374 ~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  449 (901)
                      +..... .+++|+.|++++|+++ .+|..+..+++|+.|++++|.++...    +..+++|++|++++|++......
T Consensus       286 ~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~L~~L~l~~N~~~~~~~~  357 (390)
T 3o6n_A          286 ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLSHNDWDCNSLR  357 (390)
T ss_dssp             EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC----CCTTCCCSEEECCSSCEEHHHHH
T ss_pred             ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC----chhhccCCEEEcCCCCccchhHH
Confidence            765444 6788999999999887 56777888888999999998887762    56778888888888887754433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-32  Score=314.54  Aligned_cols=319  Identities=20%  Similarity=0.174  Sum_probs=258.9

Q ss_pred             EEEcCCCccCCcccCCCCCCceeeccCccccCCCC---CCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcc
Q 041976          509 YVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLP---VPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNG  585 (901)
Q Consensus       509 ~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  585 (901)
                      .++.+++.++.++....++++.|++++|.+.+..+   ..+++|++|++++|.+++..|..|.++++|++|++++|.+++
T Consensus        15 ~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~   94 (477)
T 2id5_A           15 AVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL   94 (477)
T ss_dssp             EEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred             EEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc
Confidence            34444444554444444455555555555554433   235788999999999998888899999999999999999985


Q ss_pred             cCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCcccccc
Q 041976          586 TIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLG  665 (901)
Q Consensus       586 ~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~  665 (901)
                      ..+..+..+. +|++|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|++++..+..+.
T Consensus        95 ~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~  173 (477)
T 2id5_A           95 IPLGVFTGLS-NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS  173 (477)
T ss_dssp             CCTTSSTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHT
T ss_pred             cCcccccCCC-CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhc
Confidence            4444566665 999999999999988889999999999999999999988888999999999999999999988888899


Q ss_pred             CCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEE
Q 041976          666 NLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVV  745 (901)
Q Consensus       666 ~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~  745 (901)
                      .+++|+.|++++|.+.+..+..  +..+++|+.|++++|.+.+.+|...+.                             
T Consensus       174 ~l~~L~~L~l~~n~i~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~-----------------------------  222 (477)
T 2id5_A          174 HLHGLIVLRLRHLNINAIRDYS--FKRLYRLKVLEISHWPYLDTMTPNCLY-----------------------------  222 (477)
T ss_dssp             TCTTCCEEEEESCCCCEECTTC--SCSCTTCCEEEEECCTTCCEECTTTTT-----------------------------
T ss_pred             ccCCCcEEeCCCCcCcEeChhh--cccCcccceeeCCCCccccccCccccc-----------------------------
Confidence            9999999999999988765543  377899999999999887666543211                             


Q ss_pred             eecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCc
Q 041976          746 TLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPK  825 (901)
Q Consensus       746 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~  825 (901)
                                  ..+|++|++++|++++..+..+.++++|++|+|++|.+++..+..|..+++|+.|+|++|++++..|.
T Consensus       223 ------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  290 (477)
T 2id5_A          223 ------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY  290 (477)
T ss_dssp             ------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT
T ss_pred             ------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH
Confidence                        24789999999999977778899999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCeeeCCCCcCccCCCCC-CCCCCcccccccCCcCCCCCC
Q 041976          826 PLTSLTSLSVLNLSHNRLDGPIPHG-PQFNTFQEDSYIGNLGLCGFP  871 (901)
Q Consensus       826 ~l~~l~~L~~L~Ls~N~l~g~iP~~-~~~~~~~~~~~~~n~~lcg~~  871 (901)
                      .|..+++|++|+|++|++++..|.. ..+..+....+.+|+..|+++
T Consensus       291 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          291 AFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             TBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             HhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence            9999999999999999999754432 234455666677777766543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.9e-33  Score=301.94  Aligned_cols=257  Identities=30%  Similarity=0.510  Sum_probs=179.1

Q ss_pred             CCEEECCCCcCcc--cCCcchhcCCCCccEEECCC-CcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEE
Q 041976          573 LDVLDLSNNRLNG--TIPECIGNFSPSLSVLDLRN-NRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVL  649 (901)
Q Consensus       573 L~~L~Ls~n~l~~--~~p~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  649 (901)
                      +++|++++|.+.+  .+|..+..+. +|++|++++ |.+.+.+|..|..+++|++|++++|++++.+|..|.++++|++|
T Consensus        52 l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           52 VNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            4444444444444  4444444443 444444442 44444444445555555555555555554555555555555555


Q ss_pred             eCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCC-CCcEEEcCCCccccCCcHHHHHhhHhhhcccccC
Q 041976          650 DIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFP-KLRILDLSINNFSGYLPERFLENLNAMRNVSADE  728 (901)
Q Consensus       650 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~  728 (901)
                      ++++|++.+.+|..+..+++|++|++++|++.+.++...  ..++ +|++|++++|++++.+|..+.             
T Consensus       131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~~L~~L~L~~N~l~~~~~~~~~-------------  195 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTFA-------------  195 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGGGG-------------
T ss_pred             eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH--hhhhhcCcEEECcCCeeeccCChHHh-------------
Confidence            555555555555555555555555555555554444332  3344 667777777777766665431             


Q ss_pred             CcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCC
Q 041976          729 GKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAK  808 (901)
Q Consensus       729 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~  808 (901)
                                                  .+. |++|++++|.+++.+|..|+++++|++|+|++|++++.+|. +..+++
T Consensus       196 ----------------------------~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~  245 (313)
T 1ogq_A          196 ----------------------------NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKN  245 (313)
T ss_dssp             ----------------------------GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTT
T ss_pred             ----------------------------CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCC
Confidence                                        023 78899999999989999999999999999999999987776 888999


Q ss_pred             CCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCCCCCCCCcccccccCCcCCCCCCCCCCC
Q 041976          809 LESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKC  876 (901)
Q Consensus       809 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~~~n~~lcg~~l~~~c  876 (901)
                      |++|+|++|++++.+|..+..+++|++|+|++|+++|.+|...++..+....+.+|+.+||.|+. .|
T Consensus       246 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             CCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            99999999999999999999999999999999999999999888889999999999999998875 56

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.4e-31  Score=314.42  Aligned_cols=346  Identities=19%  Similarity=0.218  Sum_probs=277.9

Q ss_pred             cCCCCCCCCCCcC----ccceeecCCCCeEEEEEcCCCCCCCCCCCCcccccCccCceEeCCCCCCCCCcCCc-cccCCC
Q 041976           58 KMISWKKDTNCCS----WDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISS-GFSRFR  132 (901)
Q Consensus        58 ~l~~w~~~~~~c~----w~gv~c~~~~~~v~~l~L~~~~~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~-~l~~l~  132 (901)
                      .+++|..+.+||.    |.++.|+.   +   ++-........+    .-..+.+++.+++++|.+..  +|. .+++++
T Consensus         8 ~l~~~~~~~~C~~~~~~~~c~~~~~---~---i~~~~~~~~~~~----~~l~l~~l~~l~l~~~~l~~--lp~~~~~~l~   75 (597)
T 3oja_B            8 NVKPRQPEYKCIDSNLQYDCVFYDV---H---IDMQTQDVYFGF----EDITLNNQKIVTFKNSTMRK--LPAALLDSFR   75 (597)
T ss_dssp             ---CCCSEECCCCC--CCSEEECSC---E---ECSSCCCCEESC----SSGGGCCCSEEEESSCEESE--ECTHHHHHCC
T ss_pred             cccCCCCCCcCcccCcCceeEecCc---e---ecccccccccCc----ccccCCCceEEEeeCCCCCC--cCHHHHccCC
Confidence            6889998888874    55555441   1   111111111111    23457899999999999877  554 478899


Q ss_pred             CCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCC
Q 041976          133 NLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFP  212 (901)
Q Consensus       133 ~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~  212 (901)
                      +|++|+|++|.+.+..|..++.+              ++|++|+|++|.+++..|..++++++|++|+|++| .+++..+
T Consensus        76 ~L~~L~L~~n~l~~~~~~~~~~l--------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~  140 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDTYAFAYA--------------HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPR  140 (597)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTC--------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred             CCcEEECCCCCCCCCChHHhcCC--------------CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCH
Confidence            99999999999998778888888              99999999999999988888999999999999999 7776555


Q ss_pred             C-CCCCCCcceeecCCCCCccCCc-cccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCC
Q 041976          213 A-NNWTSPIEYLDVSETSFSELPD-SIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQ  290 (901)
Q Consensus       213 ~-~~~~~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  290 (901)
                      . +..+++|++|++++|.+..++. .++.+++|++|++++|.+.+.   .++.+++|+.|++++|.+++     +....+
T Consensus       141 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~  212 (597)
T 3oja_B          141 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIA  212 (597)
T ss_dssp             TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCTT
T ss_pred             HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCCch
Confidence            4 4789999999999999997754 689999999999999998864   35668899999999998874     345578


Q ss_pred             CCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCC
Q 041976          291 LTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDN  370 (901)
Q Consensus       291 L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  370 (901)
                      |++|++++|.+....+.+  .++|+.|++++|.+++  +..+..+++|++|++++|.+++..|..++.+++|+.|++++|
T Consensus       213 L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  288 (597)
T 3oja_B          213 VEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN  288 (597)
T ss_dssp             CSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS
T ss_pred             hheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC
Confidence            999999999988655443  2689999999999986  477889999999999999999998999999999999999999


Q ss_pred             ccccccCCC-CCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCcccccc
Q 041976          371 QLSGHIDEF-PSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGN  447 (901)
Q Consensus       371 ~l~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~  447 (901)
                      .+++..... .+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+..    +..+++|+.|++++|++....
T Consensus       289 ~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          289 RLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             CCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC----CCTTCCCSEEECCSSCEEHHH
T ss_pred             CCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC----hhhcCCCCEEEeeCCCCCChh
Confidence            998765544 5788999999999988 57778888899999999999888762    567788888888888876544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=8.3e-33  Score=298.68  Aligned_cols=277  Identities=21%  Similarity=0.279  Sum_probs=155.6

Q ss_pred             CCCCHHHHHHHHHhhhcCcCCCCCccccccCCCcCCCC----CCCCCCcCccceeecC--------CCCeEEEEEcCCCC
Q 041976           25 KHCPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISW----KKDTNCCSWDGVTCDM--------ATGNVISLDLSCSW   92 (901)
Q Consensus        25 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~l~~w----~~~~~~c~w~gv~c~~--------~~~~v~~l~L~~~~   92 (901)
                      ..+..+|++||++||+++..++.+         .+++|    ....++|.|.|+.|+.        ..++|+.|+|+++.
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~---------~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~   92 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNR---------WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVP   92 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTT---------HHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             cccCchHHHHHHHHHHhccCCchh---------hhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCC
Confidence            446678999999999998655432         56788    4467899999999952        22456666666666


Q ss_pred             CCCCCCCCcccccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCc
Q 041976           93 LHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSL  172 (901)
Q Consensus        93 ~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L  172 (901)
                      +. .+++  .++.+++|++|+|++|.++.  +|..++++++|++|+|++|.+. .+|..++.+              ++|
T Consensus        93 l~-~lp~--~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l--------------~~L  152 (328)
T 4fcg_A           93 LP-QFPD--QAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLR-ALPASIASL--------------NRL  152 (328)
T ss_dssp             CS-SCCS--CGGGGTTCSEEEEESSCCCC--CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGC--------------TTC
T ss_pred             ch-hcCh--hhhhCCCCCEEECCCCCccc--hhHHHhccCCCCEEECCCCccc-cCcHHHhcC--------------cCC
Confidence            55 4444  45556666666666666552  5555566666666666666555 555555555              555


Q ss_pred             cEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCC
Q 041976          173 TSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQ  252 (901)
Q Consensus       173 ~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~  252 (901)
                      ++|++++|.+.+.+|..++.      .++.+         .+..+++|++|++++|.++.+|..++++++|++|++++|.
T Consensus       153 ~~L~L~~n~~~~~~p~~~~~------~~~~~---------~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~  217 (328)
T 4fcg_A          153 RELSIRACPELTELPEPLAS------TDASG---------EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP  217 (328)
T ss_dssp             CEEEEEEETTCCCCCSCSEE------EC-CC---------CEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC
T ss_pred             CEEECCCCCCccccChhHhh------ccchh---------hhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC
Confidence            55555555555555543322      00000         0122444555555555555555555555555555555555


Q ss_pred             CccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCCCcc
Q 041976          253 FVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSH  331 (901)
Q Consensus       253 ~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~  331 (901)
                      +.+ +|..++.+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|. +.++++|++|++++|.+.+.+|..
T Consensus       218 l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~  296 (328)
T 4fcg_A          218 LSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL  296 (328)
T ss_dssp             CCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred             CCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence            553 444455555555555555555555555555555555555555555444443 444455555555555544445555


Q ss_pred             ccCCcCCcEEECcCC
Q 041976          332 GSRLQNLVLIRLNNN  346 (901)
Q Consensus       332 ~~~l~~L~~L~L~~n  346 (901)
                      ++++++|+.+++..+
T Consensus       297 l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          297 IAQLPANCIILVPPH  311 (328)
T ss_dssp             GGGSCTTCEEECCGG
T ss_pred             HhhccCceEEeCCHH
Confidence            555555554444433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=1.4e-30  Score=285.08  Aligned_cols=306  Identities=22%  Similarity=0.270  Sum_probs=175.1

Q ss_pred             cccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcC
Q 041976          103 LFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCIL  182 (901)
Q Consensus       103 l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~  182 (901)
                      +..+++|++|+++++.+..  ++ .+..+++|++|++++|.+.+ +|. +..+              ++|++|++++|.+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l--------------~~L~~L~L~~n~i  100 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNL--------------VKLTNLYIGTNKI  100 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTC--------------TTCCEEECCSSCC
T ss_pred             chhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCcccc-chh-hhcC--------------CcCCEEEccCCcc
Confidence            4456666666666666654  33 25666666666666666553 232 4555              6666666666665


Q ss_pred             CCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCcccc
Q 041976          183 QGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLG  262 (901)
Q Consensus       183 ~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~  262 (901)
                      ++.  ..+..+++|++|++++| .+.+. +.+..+++|++|++++|.....+..+..+++|++|++++|.+.+..+  +.
T Consensus       101 ~~~--~~~~~l~~L~~L~l~~n-~i~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~  174 (347)
T 4fmz_A          101 TDI--SALQNLTNLRELYLNED-NISDI-SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IA  174 (347)
T ss_dssp             CCC--GGGTTCTTCSEEECTTS-CCCCC-GGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GG
T ss_pred             cCc--hHHcCCCcCCEEECcCC-cccCc-hhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hc
Confidence            542  24556666666666666 44332 22445555555555555433333446666666666666666554322  55


Q ss_pred             CCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEE
Q 041976          263 NLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIR  342 (901)
Q Consensus       263 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  342 (901)
                      .+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+  +..+++|++|+
T Consensus       175 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  249 (347)
T 4fmz_A          175 NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLE  249 (347)
T ss_dssp             GCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             cCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEE
Confidence            66666666666666653322  5566666666666666654433 5556666666666666654322  56666666666


Q ss_pred             CcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCcc
Q 041976          343 LNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIA  422 (901)
Q Consensus       343 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  422 (901)
                      +++|.+++.  ..+..+++|++|++++|.+.+......+++|+.|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus       250 l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  327 (347)
T 4fmz_A          250 IGTNQISDI--NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR  327 (347)
T ss_dssp             CCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred             CCCCccCCC--hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccccc
Confidence            666666542  345666666666666666655422224556666666666666666666666666666666666666653


Q ss_pred             chhhhhhcCCCcEEEccCCcc
Q 041976          423 EPYMFAKLIKLKYLYLSHNSL  443 (901)
Q Consensus       423 ~~~~l~~l~~L~~L~L~~n~l  443 (901)
                      +   +..+++|++|++++|.+
T Consensus       328 ~---~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          328 P---LASLSKMDSADFANQVI  345 (347)
T ss_dssp             G---GGGCTTCSEESSSCC--
T ss_pred             C---hhhhhccceeehhhhcc
Confidence            3   55566666666666554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=3.2e-30  Score=282.19  Aligned_cols=308  Identities=21%  Similarity=0.327  Sum_probs=210.4

Q ss_pred             cccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCC
Q 041976          127 GFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPS  206 (901)
Q Consensus       127 ~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~  206 (901)
                      .+..+++|++|+++++.+. .+| .+..+              ++|++|++++|.+++..+  +..+++|++|++++| .
T Consensus        39 ~~~~l~~L~~L~l~~~~i~-~~~-~~~~~--------------~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~   99 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVA-SIQ-GIEYL--------------TNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-K   99 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCC-CCT-TGGGC--------------TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-C
T ss_pred             cchhcccccEEEEeCCccc-cch-hhhhc--------------CCccEEEccCCccccchh--hhcCCcCCEEEccCC-c
Confidence            3567889999999999886 344 36666              899999999998886543  888899999999988 6


Q ss_pred             CCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCcccc
Q 041976          207 LAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLS  286 (901)
Q Consensus       207 l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  286 (901)
                      ++. ++.+..+++|++|++++|.+..++. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+  +.
T Consensus       100 i~~-~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~  174 (347)
T 4fmz_A          100 ITD-ISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IA  174 (347)
T ss_dssp             CCC-CGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GG
T ss_pred             ccC-chHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hc
Confidence            654 4567777888888888888887765 7778888888888876554443 37777888888888887764433  67


Q ss_pred             CCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEE
Q 041976          287 NLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVR  366 (901)
Q Consensus       287 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  366 (901)
                      .+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|+
T Consensus       175 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  249 (347)
T 4fmz_A          175 NLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLE  249 (347)
T ss_dssp             GCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             cCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEE
Confidence            77788888888877765433 6677777777777777765433  6677777777777777764433  66777777777


Q ss_pred             ccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccc
Q 041976          367 LSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLG  446 (901)
Q Consensus       367 L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~  446 (901)
                      +++|.+.+......+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|++   
T Consensus       250 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l---  323 (347)
T 4fmz_A          250 IGTNQISDINAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDM-EVIGGLTNLTTLFLSQNHI---  323 (347)
T ss_dssp             CCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGH-HHHHTCTTCSEEECCSSSC---
T ss_pred             CCCCccCCChhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcCh-hHhhccccCCEEEccCCcc---
Confidence            7777666542223556666666666666543  345566666666666666655433 4455555555555555554   


Q ss_pred             cccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCccc
Q 041976          447 NTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKID  492 (901)
Q Consensus       447 ~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~  492 (901)
                                            +.++. +..+++|++|++++|.++
T Consensus       324 ----------------------~~~~~-~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          324 ----------------------TDIRP-LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             ----------------------CCCGG-GGGCTTCSEESSSCC---
T ss_pred             ----------------------ccccC-hhhhhccceeehhhhccc
Confidence                                  44433 566777777777777664

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.1e-30  Score=306.71  Aligned_cols=333  Identities=22%  Similarity=0.242  Sum_probs=211.5

Q ss_pred             CCccEEecCCcCCCCCCh-hhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeecc
Q 041976          456 PKFSYLSLSACNISAFPR-FLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLR  534 (901)
Q Consensus       456 ~~L~~L~l~~~~l~~lp~-~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~  534 (901)
                      ++++.+++++|.+..+|. .+..+++|++|++++|.+.+..|..+  ..+++|+.|++++|.+++++...|.+       
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~-------  121 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF--AYAHTIQKLYMGFNAIRYLPPHVFQN-------  121 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCCCCCTTTTTT-------
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHh--cCCCCCCEEECCCCcCCCCCHHHHcC-------
Confidence            445555555555555554 45667777777777777776666555  44555555555555555444332211       


Q ss_pred             CccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCc
Q 041976          535 SNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPG  614 (901)
Q Consensus       535 ~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~  614 (901)
                                 +++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+. +|++|++++|.+++..  
T Consensus       122 -----------l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~--  187 (597)
T 3oja_B          122 -----------VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT-SLQNLQLSSNRLTHVD--  187 (597)
T ss_dssp             -----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT-TCCEEECTTSCCSBCC--
T ss_pred             -----------CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCC-cCcEEECcCCCCCCcC--
Confidence                       23455555555555544444455566666666666666555555555544 6666666666655432  


Q ss_pred             CccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCC
Q 041976          615 TFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFP  694 (901)
Q Consensus       615 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~  694 (901)
                       +..+++|+.|++++|.+++     +...++|++|++++|.+....+..   .++|++|++++|.+.+.    ..+..++
T Consensus       188 -~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~----~~l~~l~  254 (597)
T 3oja_B          188 -LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT----AWLLNYP  254 (597)
T ss_dssp             -GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC----GGGGGCT
T ss_pred             -hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC----hhhccCC
Confidence             3445556666666665553     223345666666666655433221   24566666666666542    1234566


Q ss_pred             CCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccc
Q 041976          695 KLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGE  774 (901)
Q Consensus       695 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  774 (901)
                      +|+.|++++|.+.+..|..+                                         ..+++|+.|+|++|.+++ 
T Consensus       255 ~L~~L~Ls~N~l~~~~~~~~-----------------------------------------~~l~~L~~L~Ls~N~l~~-  292 (597)
T 3oja_B          255 GLVEVDLSYNELEKIMYHPF-----------------------------------------VKMQRLERLYISNNRLVA-  292 (597)
T ss_dssp             TCSEEECCSSCCCEEESGGG-----------------------------------------TTCSSCCEEECTTSCCCE-
T ss_pred             CCCEEECCCCccCCCCHHHh-----------------------------------------cCccCCCEEECCCCCCCC-
Confidence            66666666666665544322                                         115778899999999986 


Q ss_pred             cchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCCCCCCC
Q 041976          775 ISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFN  854 (901)
Q Consensus       775 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~  854 (901)
                      +|..+..+++|++|+|++|.++ .+|..++.+++|+.|+|++|.+++..   +..+++|++|+|++|++.+..+ ...+.
T Consensus       293 l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~-~~~~~  367 (597)
T 3oja_B          293 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL-RALFR  367 (597)
T ss_dssp             EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH-HHHTT
T ss_pred             CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhH-HHHHH
Confidence            5666788999999999999999 57778899999999999999998763   6678899999999999987532 22456


Q ss_pred             CcccccccCCcCCCCCC
Q 041976          855 TFQEDSYIGNLGLCGFP  871 (901)
Q Consensus       855 ~~~~~~~~~n~~lcg~~  871 (901)
                      .+....+.++...|+.+
T Consensus       368 ~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          368 NVARPAVDDADQHCKID  384 (597)
T ss_dssp             TCCTTTBCCCCCCCCTT
T ss_pred             HHhhhccccccccCCcc
Confidence            66777788999999764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=7e-30  Score=284.14  Aligned_cols=289  Identities=20%  Similarity=0.161  Sum_probs=180.2

Q ss_pred             CCCcceeecCCCCCccCCcc-ccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEE
Q 041976          217 TSPIEYLDVSETSFSELPDS-IGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLD  295 (901)
Q Consensus       217 ~~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  295 (901)
                      ++++++|+++++.+..+|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..|+++++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            34556666666666666554 46667777777777776665555666777777777777777666666667777777777


Q ss_pred             ccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCcccc
Q 041976          296 LSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSG  374 (901)
Q Consensus       296 Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  374 (901)
                      +++|.++...+. +.++++|++|++++|.+.+..+..++.+++|++|++++|.+++.   .+..+++|+.|++++|.+.+
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~  200 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST  200 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence            777776654444 45667777777777777666666667777777777777776643   24456667777777766654


Q ss_pred             ccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCC
Q 041976          375 HIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSP  454 (901)
Q Consensus       375 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  454 (901)
                      ..   ..++|+.|++++|.++.. |.  ...++|+.|++++|.+++.   ..+..+++|++|++++|.++...... ...
T Consensus       201 ~~---~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~  270 (390)
T 3o6n_A          201 LA---IPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHP-FVK  270 (390)
T ss_dssp             EE---CCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGG-GTT
T ss_pred             cC---CCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcChhH-ccc
Confidence            32   224567777777766533 22  1235677777777776654   35666677777777777666543322 234


Q ss_pred             CCCccEEecCCcCCCCCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcc
Q 041976          455 FPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMK  521 (901)
Q Consensus       455 ~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~  521 (901)
                      +++|++|++++|+++.+|..+..+++|++|++++|++. .+|..+  ..+++|+.|++++|.++.++
T Consensus       271 l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~--~~l~~L~~L~L~~N~i~~~~  334 (390)
T 3o6n_A          271 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQ--PQFDRLENLYLDHNSIVTLK  334 (390)
T ss_dssp             CSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGH--HHHTTCSEEECCSSCCCCCC
T ss_pred             cccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccc--cccCcCCEEECCCCccceeC
Confidence            56666666666666666655566666777777777666 334434  33455666666666555544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=6.8e-32  Score=308.02  Aligned_cols=388  Identities=20%  Similarity=0.148  Sum_probs=234.6

Q ss_pred             CCCCEEEccCccCCCCCch-hhhcccccCceecccCcCCCcc---chhhhhhcCCCcEEEccCCccccccccccCCCCC-
Q 041976          382 KSLQNIYLSNNRLQGSIPS-SIFELVNLTDLQLDSNNFSGIA---EPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFP-  456 (901)
Q Consensus       382 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-  456 (901)
                      ++|++|++++|.++..... .+..+++|++|++++|.+++..   -+..+..+++|++|++++|.+.......+...++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            3456666666666543322 2667777888888887776431   1245666778888888887776543333322333 


Q ss_pred             ---CccEEecCCcCCC-----CCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCC
Q 041976          457 ---KFSYLSLSACNIS-----AFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNL  528 (901)
Q Consensus       457 ---~L~~L~l~~~~l~-----~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L  528 (901)
                         +|++|++++|+++     .++..+..+++|++|++++|.+.+..+..+...-.                        
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~------------------------  138 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL------------------------  138 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT------------------------
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh------------------------
Confidence               5777777777765     34566777778888888888776554444321100                        


Q ss_pred             ceeeccCccccCCCCCCCCCCcEEEccCCccccc----cccccccCCCCCEEECCCCcCcccCCcchhc----CCCCccE
Q 041976          529 GYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGE----IIHSICDIIALDVLDLSNNRLNGTIPECIGN----FSPSLSV  600 (901)
Q Consensus       529 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~----~~~~L~~  600 (901)
                                     ...++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..+..+..    ..++|++
T Consensus       139 ---------------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~  203 (461)
T 1z7x_W          139 ---------------DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA  203 (461)
T ss_dssp             ---------------STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCE
T ss_pred             ---------------cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceE
Confidence                           0012455555555555543    2444556677777777777776543333322    1237777


Q ss_pred             EECCCCccccc----CCcCccCCCccCEEEccCCcccccC-----CccccCCCcccEEeCCCCcCccC----ccccccCC
Q 041976          601 LDLRNNRLNGS----IPGTFAESNWLRSLNLNNNELGGAI-----PQSLVNCTKVEVLDIGNIKINDA----FPYWLGNL  667 (901)
Q Consensus       601 L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~-----~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l  667 (901)
                      |++++|.+++.    ++..+..+++|++|++++|++++..     +..+..+++|++|++++|++++.    ++..+..+
T Consensus       204 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  283 (461)
T 1z7x_W          204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK  283 (461)
T ss_dssp             EECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred             EEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhC
Confidence            77777777653    3455666777778888877776432     22233567778888888777664    45556667


Q ss_pred             CCCcEEEccCCcCcccCCCCCC---CCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeE
Q 041976          668 PELQVLVLRSNKFHGSVREFEP---KESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVV  744 (901)
Q Consensus       668 ~~L~~L~L~~n~~~~~~~~~~~---~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~  744 (901)
                      ++|++|++++|.+.+..+....   ....++|++|++++|.+++.....+...                           
T Consensus       284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~---------------------------  336 (461)
T 1z7x_W          284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV---------------------------  336 (461)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH---------------------------
T ss_pred             CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHH---------------------------
Confidence            7777888877776432111100   1223578888888887765422221111                           


Q ss_pred             EeecchhHHHhhhccceeEEEccccccccccchhhhc-----cCCCCeEeCCCCcCCC----CCCccccCCCCCCEEeCC
Q 041976          745 VTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGK-----LHSLRLLNLSHNHFTG----QIPSSLGNLAKLESLDLS  815 (901)
Q Consensus       745 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~L~~L~~L~Ls  815 (901)
                                ...+++|++|++++|.+++..+..+..     .++|++|+|++|.+++    .+|..+..+++|++|||+
T Consensus       337 ----------l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~  406 (461)
T 1z7x_W          337 ----------LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS  406 (461)
T ss_dssp             ----------HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred             ----------HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECC
Confidence                      112467788888888887665555543     5688888888888875    667777788888888888


Q ss_pred             CCccCCCCCcCC-----cCCCCCCeeeCCCCcCcc
Q 041976          816 SNNVAGKIPKPL-----TSLTSLSVLNLSHNRLDG  845 (901)
Q Consensus       816 ~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~g  845 (901)
                      +|++++.....+     .....|+.|++.++.+..
T Consensus       407 ~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          407 NNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             SSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             CCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence            888875421111     123356666666665543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=7e-28  Score=261.41  Aligned_cols=199  Identities=21%  Similarity=0.267  Sum_probs=110.3

Q ss_pred             CCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCc-cccCCCCcCEEEC
Q 041976          170 SSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPD-SIGNLKLLGRLML  248 (901)
Q Consensus       170 ~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L  248 (901)
                      ++|++|++++|.+++..|..++++++|++|++++| .++ .+|.. ..++|++|++++|.+..++. .+.++++|++|++
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~-~l~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  152 (330)
T 1xku_A           76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLK-ELPEK-MPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL  152 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCS-BCCSS-CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCC-ccChh-hcccccEEECCCCcccccCHhHhcCCccccEEEC
Confidence            44444444444444444444444555555555554 333 22211 11344555555555554433 4666677777777


Q ss_pred             CCCCCcc--CCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCC
Q 041976          249 GYSQFVG--PVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLA  325 (901)
Q Consensus       249 ~~n~~~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~  325 (901)
                      ++|.+..  ..+..+.++++|++|++++|.++. +|..+.  ++|++|++++|.+++..+. +..+++|++|++++|.++
T Consensus       153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  229 (330)
T 1xku_A          153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS  229 (330)
T ss_dssp             CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred             CCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence            7776642  455566666666666666666653 343332  5666666666666655444 556666666666666666


Q ss_pred             CCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccc
Q 041976          326 GPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGH  375 (901)
Q Consensus       326 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  375 (901)
                      +..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++.
T Consensus       230 ~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~  278 (330)
T 1xku_A          230 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI  278 (330)
T ss_dssp             EECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred             eeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCcc
Confidence            555555666666666666666665 4555556666666666666655543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=6.4e-28  Score=261.87  Aligned_cols=283  Identities=21%  Similarity=0.260  Sum_probs=180.9

Q ss_pred             cCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCc
Q 041976          108 HLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFP  187 (901)
Q Consensus       108 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p  187 (901)
                      ++++++++++.++.  +|..+.  ++|++|+|++|.+.+..|..++.+              ++|++|++++|.+++..|
T Consensus        34 ~l~~l~~~~~~l~~--ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l--------------~~L~~L~L~~n~l~~~~~   95 (332)
T 2ft3_A           34 HLRVVQCSDLGLKA--VPKEIS--PDTTLLDLQNNDISELRKDDFKGL--------------QHLYALVLVNNKISKIHE   95 (332)
T ss_dssp             ETTEEECCSSCCSS--CCSCCC--TTCCEEECCSSCCCEECTTTTTTC--------------TTCCEEECCSSCCCEECG
T ss_pred             cCCEEECCCCCccc--cCCCCC--CCCeEEECCCCcCCccCHhHhhCC--------------CCCcEEECCCCccCccCH
Confidence            34444444444442  444332  456666666666654445555555              666666666666666666


Q ss_pred             cccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCc-cccCCCCcCEEECCCCCCc--cCCCccccCC
Q 041976          188 INIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPD-SIGNLKLLGRLMLGYSQFV--GPVPASLGNL  264 (901)
Q Consensus       188 ~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~~~--~~~p~~l~~l  264 (901)
                      ..++++++|++|++++| .++ .+|.... ++|++|++++|.+..+|. .+..+++|++|++++|.+.  +..+..+..+
T Consensus        96 ~~~~~l~~L~~L~L~~n-~l~-~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  172 (332)
T 2ft3_A           96 KAFSPLRKLQKLYISKN-HLV-EIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL  172 (332)
T ss_dssp             GGSTTCTTCCEEECCSS-CCC-SCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC
T ss_pred             hHhhCcCCCCEEECCCC-cCC-ccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC
Confidence            66666666666666666 444 3332111 567777777777776654 4777888888888888875  3566667766


Q ss_pred             CCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEEC
Q 041976          265 TQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRL  343 (901)
Q Consensus       265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  343 (901)
                       +|++|++++|.+++ +|..+.  ++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus       173 -~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  248 (332)
T 2ft3_A          173 -KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL  248 (332)
T ss_dssp             -CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEEC
T ss_pred             -ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEEC
Confidence             78888888888774 554443  6788888888888776655 777888888888888887776777788888888888


Q ss_pred             cCCcCcccCChhhcCCCCCcEEEccCCccccccCCC--------CCCCCCEEEccCccCC--CCCchhhhcccccCceec
Q 041976          344 NNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF--------PSKSLQNIYLSNNRLQ--GSIPSSIFELVNLTDLQL  413 (901)
Q Consensus       344 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--------~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L  413 (901)
                      ++|.++ .+|..+..+++|++|++++|.+++..+..        ....|+.|++++|.+.  +..|..|..+++|+.+++
T Consensus       249 ~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l  327 (332)
T 2ft3_A          249 DNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF  327 (332)
T ss_dssp             CSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC
T ss_pred             CCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhc
Confidence            888877 66767777888888888888776544332        1234555555555544  334444444555555555


Q ss_pred             ccC
Q 041976          414 DSN  416 (901)
Q Consensus       414 ~~n  416 (901)
                      ++|
T Consensus       328 ~~n  330 (332)
T 2ft3_A          328 GNY  330 (332)
T ss_dssp             ---
T ss_pred             ccc
Confidence            444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=3.1e-28  Score=264.22  Aligned_cols=265  Identities=18%  Similarity=0.207  Sum_probs=199.0

Q ss_pred             ceeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcc
Q 041976          529 GYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRL  608 (901)
Q Consensus       529 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l  608 (901)
                      +.++++++.+.......++.+++|++++|.+++..+..+.++++|++|++++|.+++..|..+..+. +|++|++++|++
T Consensus        34 ~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l  112 (330)
T 1xku_A           34 RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-KLERLYLSKNQL  112 (330)
T ss_dssp             TEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCC
T ss_pred             eEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC-CCCEEECCCCcC
Confidence            3444444444333333346677778888888777777788888888888888888876677777776 888888888888


Q ss_pred             cccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCcc--CccccccCCCCCcEEEccCCcCcccCCC
Q 041976          609 NGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKIND--AFPYWLGNLPELQVLVLRSNKFHGSVRE  686 (901)
Q Consensus       609 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~~~~~~~~  686 (901)
                      +. +|..+.  ++|++|++++|++++..+..|.++++|++|++++|++..  ..+..+.++++|++|++++|.+... +.
T Consensus       113 ~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~  188 (330)
T 1xku_A          113 KE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-PQ  188 (330)
T ss_dssp             SB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-CS
T ss_pred             Cc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC-Cc
Confidence            74 444443  678888888888887777778888888888888888853  6677788888888888888887643 22


Q ss_pred             CCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEc
Q 041976          687 FEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDF  766 (901)
Q Consensus       687 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L  766 (901)
                      .    ..++|++|++++|.+++..|..+ .                                        .+++|++|++
T Consensus       189 ~----~~~~L~~L~l~~n~l~~~~~~~~-~----------------------------------------~l~~L~~L~L  223 (330)
T 1xku_A          189 G----LPPSLTELHLDGNKITKVDAASL-K----------------------------------------GLNNLAKLGL  223 (330)
T ss_dssp             S----CCTTCSEEECTTSCCCEECTGGG-T----------------------------------------TCTTCCEEEC
T ss_pred             c----ccccCCEEECCCCcCCccCHHHh-c----------------------------------------CCCCCCEEEC
Confidence            2    23788899999988876555332 1                                        1467788888


Q ss_pred             cccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCC------CCCCeeeCCC
Q 041976          767 SSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSL------TSLSVLNLSH  840 (901)
Q Consensus       767 s~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l------~~L~~L~Ls~  840 (901)
                      ++|.+++..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|...      ++|+.+++++
T Consensus       224 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~  302 (330)
T 1xku_A          224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS  302 (330)
T ss_dssp             CSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred             CCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeec
Confidence            888888877778888888888888888888 667778888888888888888888777777543      6788888888


Q ss_pred             CcCc
Q 041976          841 NRLD  844 (901)
Q Consensus       841 N~l~  844 (901)
                      |++.
T Consensus       303 N~~~  306 (330)
T 1xku_A          303 NPVQ  306 (330)
T ss_dssp             SSSC
T ss_pred             Cccc
Confidence            8875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=2e-28  Score=265.77  Aligned_cols=285  Identities=21%  Similarity=0.233  Sum_probs=143.5

Q ss_pred             CccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCC---CCCCCcEEEccCCccccccccccccCCCCCEEECCCCc
Q 041976          506 SLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPV---PPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNR  582 (901)
Q Consensus       506 ~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  582 (901)
                      .++.++++++.++.++...+++++.|++++|.+.+..+.   .+++|++|++++|.+++..|..+.++++|++|++++|.
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  113 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH  113 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred             cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence            467777777777766655555555555555555443321   23445555555555554445555555555555555555


Q ss_pred             CcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCccc--ccCCccccCCCcccEEeCCCCcCccCc
Q 041976          583 LNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELG--GAIPQSLVNCTKVEVLDIGNIKINDAF  660 (901)
Q Consensus       583 l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~~  660 (901)
                      ++ .+|..+.   ++|++|++++|++++..+..|..+++|++|++++|.++  +..+..+..+ +|++|++++|++++. 
T Consensus       114 l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l-  187 (332)
T 2ft3_A          114 LV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI-  187 (332)
T ss_dssp             CC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC-
T ss_pred             CC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc-
Confidence            54 3443332   24555555555555444444555555555555555553  2334444444 455555555554442 


Q ss_pred             cccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCcccee
Q 041976          661 PYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQ  740 (901)
Q Consensus       661 ~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~  740 (901)
                      |..+.  ++|++|++++|.+.+..+...  ..+++|+.|++++|.+.+..+..+                          
T Consensus       188 ~~~~~--~~L~~L~l~~n~i~~~~~~~l--~~l~~L~~L~L~~N~l~~~~~~~~--------------------------  237 (332)
T 2ft3_A          188 PKDLP--ETLNELHLDHNKIQAIELEDL--LRYSKLYRLGLGHNQIRMIENGSL--------------------------  237 (332)
T ss_dssp             CSSSC--SSCSCCBCCSSCCCCCCTTSS--TTCTTCSCCBCCSSCCCCCCTTGG--------------------------
T ss_pred             Ccccc--CCCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCCcCChhHh--------------------------
Confidence            22221  344445555554443332221  344444444444444443222111                          


Q ss_pred             ceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCC------CCCCEEeC
Q 041976          741 DSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNL------AKLESLDL  814 (901)
Q Consensus       741 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L------~~L~~L~L  814 (901)
                                     ..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|...      .+|+.|++
T Consensus       238 ---------------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l  301 (332)
T 2ft3_A          238 ---------------SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL  301 (332)
T ss_dssp             ---------------GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred             ---------------hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEe
Confidence                           01355566666666665 455556666666666666666665555555432      45566666


Q ss_pred             CCCccC--CCCCcCCcCCCCCCeeeCCCCc
Q 041976          815 SSNNVA--GKIPKPLTSLTSLSVLNLSHNR  842 (901)
Q Consensus       815 s~N~l~--~~~p~~l~~l~~L~~L~Ls~N~  842 (901)
                      ++|.+.  +..|..|..+++|+.+++++|+
T Consensus       302 ~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          302 FNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ecCcccccccCcccccccchhhhhhccccc
Confidence            666665  4555556666666666666653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=4.6e-31  Score=301.14  Aligned_cols=367  Identities=17%  Similarity=0.185  Sum_probs=215.3

Q ss_pred             cccCceecccCcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCChhhccCCCCCEEe
Q 041976          406 VNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLD  485 (901)
Q Consensus       406 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~  485 (901)
                      ++|++|++++|+++.......+..+++|++|++++|.++.....                    .++..+..+++|++|+
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~--------------------~l~~~l~~~~~L~~L~   62 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCK--------------------DISSALRVNPALAELN   62 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHH--------------------HHHHHHHTCTTCCEEE
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHH--------------------HHHHHHHhCCCcCEEe
Confidence            56788888888877665444477777888887777776533211                    2345566677777777


Q ss_pred             CCCCcccccCChhhhhcCCC----CccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCcccc
Q 041976          486 LSENKIDGQIPSWISEIGKD----SLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTG  561 (901)
Q Consensus       486 ls~n~l~~~~p~~~~~~~~~----~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~  561 (901)
                      +++|.+.+..+..+.. .+.    +|++|++++|.++......+              .......++|++|++++|.+++
T Consensus        63 Ls~n~l~~~~~~~l~~-~l~~~~~~L~~L~L~~n~i~~~~~~~l--------------~~~l~~~~~L~~L~Ls~n~i~~  127 (461)
T 1z7x_W           63 LRSNELGDVGVHCVLQ-GLQTPSCKIQKLSLQNCCLTGAGCGVL--------------SSTLRTLPTLQELHLSDNLLGD  127 (461)
T ss_dssp             CTTCCCHHHHHHHHHH-TTCSTTCCCCEEECTTSCCBGGGHHHH--------------HHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCcCChHHHHHHHH-HHhhCCCceeEEEccCCCCCHHHHHHH--------------HHHHccCCceeEEECCCCcCch
Confidence            7777776544433321 111    34444444444332110000              0000112345555555555544


Q ss_pred             cccccccc-----CCCCCEEECCCCcCcccC----CcchhcCCCCccEEECCCCcccccCCcCcc-----CCCccCEEEc
Q 041976          562 EIIHSICD-----IIALDVLDLSNNRLNGTI----PECIGNFSPSLSVLDLRNNRLNGSIPGTFA-----ESNWLRSLNL  627 (901)
Q Consensus       562 ~~~~~~~~-----l~~L~~L~Ls~n~l~~~~----p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L  627 (901)
                      ..+..+..     .++|++|++++|.+++..    +..+..++ +|++|++++|.+++..+..+.     ..++|++|++
T Consensus       128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L  206 (461)
T 1z7x_W          128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP-DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL  206 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCT-TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEEC
T ss_pred             HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCC-CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEc
Confidence            33332222     345666666666665432    33333333 666666666666543322222     2345666666


Q ss_pred             cCCccccc----CCccccCCCcccEEeCCCCcCccCc-----cccccCCCCCcEEEccCCcCccc----CCCCCCCCCCC
Q 041976          628 NNNELGGA----IPQSLVNCTKVEVLDIGNIKINDAF-----PYWLGNLPELQVLVLRSNKFHGS----VREFEPKESFP  694 (901)
Q Consensus       628 s~N~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~~~~~----~~~~~~~~~l~  694 (901)
                      ++|.++..    ++..+..+++|++|++++|++.+..     +..+..+++|++|++++|.++..    ++..  +..++
T Consensus       207 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~--l~~~~  284 (461)
T 1z7x_W          207 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV--LRAKE  284 (461)
T ss_dssp             TTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH--HHHCT
T ss_pred             cCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH--HhhCC
Confidence            66666542    3445555666666666666655432     22223455666666666655432    1111  12345


Q ss_pred             CCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccc
Q 041976          695 KLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGE  774 (901)
Q Consensus       695 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  774 (901)
                      +|++|++++|.+.+..+..+...                                    .....+.|++|++++|.+++.
T Consensus       285 ~L~~L~Ls~n~i~~~~~~~l~~~------------------------------------l~~~~~~L~~L~L~~n~l~~~  328 (461)
T 1z7x_W          285 SLKELSLAGNELGDEGARLLCET------------------------------------LLEPGCQLESLWVKSCSFTAA  328 (461)
T ss_dssp             TCCEEECTTCCCHHHHHHHHHHH------------------------------------HTSTTCCCCEEECTTSCCBGG
T ss_pred             CcceEECCCCCCchHHHHHHHHH------------------------------------hccCCccceeeEcCCCCCchH
Confidence            56666666665543222111100                                    001135899999999999876


Q ss_pred             ----cchhhhccCCCCeEeCCCCcCCCCCCccccC-----CCCCCEEeCCCCccCC----CCCcCCcCCCCCCeeeCCCC
Q 041976          775 ----ISQVIGKLHSLRLLNLSHNHFTGQIPSSLGN-----LAKLESLDLSSNNVAG----KIPKPLTSLTSLSVLNLSHN  841 (901)
Q Consensus       775 ----~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-----L~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N  841 (901)
                          ++..+..+++|++|+|++|.+++..+..+..     .++|++|+|++|++++    .+|..+..+++|++|++++|
T Consensus       329 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N  408 (461)
T 1z7x_W          329 CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN  408 (461)
T ss_dssp             GHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred             HHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence                6777888999999999999998766655543     6799999999999996    78888999999999999999


Q ss_pred             cCccC
Q 041976          842 RLDGP  846 (901)
Q Consensus       842 ~l~g~  846 (901)
                      ++++.
T Consensus       409 ~i~~~  413 (461)
T 1z7x_W          409 CLGDA  413 (461)
T ss_dssp             SCCHH
T ss_pred             CCCHH
Confidence            99754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.8e-27  Score=260.69  Aligned_cols=273  Identities=20%  Similarity=0.198  Sum_probs=194.5

Q ss_pred             eccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCccccc
Q 041976          532 DLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGS  611 (901)
Q Consensus       532 ~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~  611 (901)
                      +++++.++......++++++|++++|.+++..+..+.++++|++|++++|.+++..|..+..+. +|++|++++|++++.
T Consensus        37 ~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~  115 (353)
T 2z80_A           37 KGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG-SLEHLDLSYNYLSNL  115 (353)
T ss_dssp             ECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSSC
T ss_pred             eCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC-CCCEEECCCCcCCcC
Confidence            3333333333333345677777777777766666777888888888888888766666677665 888888888888765


Q ss_pred             CCcCccCCCccCEEEccCCcccccCC-ccccCCCcccEEeCCCC-cCccCccccccCCCCCcEEEccCCcCcccCCCCCC
Q 041976          612 IPGTFAESNWLRSLNLNNNELGGAIP-QSLVNCTKVEVLDIGNI-KINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEP  689 (901)
Q Consensus       612 ~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~  689 (901)
                      .+..|..+++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+..+.++++|++|++++|.+.+..+... 
T Consensus       116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-  194 (353)
T 2z80_A          116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL-  194 (353)
T ss_dssp             CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT-
T ss_pred             CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH-
Confidence            55557788888888888888875444 46778888888888887 4666667778888888888888888876655544 


Q ss_pred             CCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEcccc
Q 041976          690 KESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSN  769 (901)
Q Consensus       690 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N  769 (901)
                       ..+++|++|++++|.+. .+|..++..                                        +++|++|++++|
T Consensus       195 -~~l~~L~~L~l~~n~l~-~~~~~~~~~----------------------------------------~~~L~~L~L~~n  232 (353)
T 2z80_A          195 -KSIQNVSHLILHMKQHI-LLLEIFVDV----------------------------------------TSSVECLELRDT  232 (353)
T ss_dssp             -TTCSEEEEEEEECSCST-THHHHHHHH----------------------------------------TTTEEEEEEESC
T ss_pred             -hccccCCeecCCCCccc-cchhhhhhh----------------------------------------cccccEEECCCC
Confidence             66778888888888874 344433322                                        456777777777


Q ss_pred             ccccccchhh---hccCCCCeEeCCCCcCCC----CCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCc
Q 041976          770 GFDGEISQVI---GKLHSLRLLNLSHNHFTG----QIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNR  842 (901)
Q Consensus       770 ~l~~~~~~~l---~~l~~L~~L~Ls~N~l~~----~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  842 (901)
                      .+++..+..+   .....++.++|+++.+++    .+|..+..+++|+.|||++|+++...+..|..+++|++|++++|+
T Consensus       233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence            7776554433   235667778888887775    467778888888899999998885444446888899999999998


Q ss_pred             CccCCC
Q 041976          843 LDGPIP  848 (901)
Q Consensus       843 l~g~iP  848 (901)
                      +.+..|
T Consensus       313 ~~~~~~  318 (353)
T 2z80_A          313 WDCSCP  318 (353)
T ss_dssp             BCCCHH
T ss_pred             ccCcCC
Confidence            888665

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=5.2e-26  Score=257.85  Aligned_cols=230  Identities=25%  Similarity=0.285  Sum_probs=138.2

Q ss_pred             CCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEE
Q 041976          546 PSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSL  625 (901)
Q Consensus       546 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  625 (901)
                      ++++++|++++|.+++..+..|.++++|++|++++|.+++..|..+..+. +|++|+|++|++++..+..|..+++|++|
T Consensus        74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  152 (452)
T 3zyi_A           74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA-SLNTLELFDNWLTVIPSGAFEYLSKLREL  152 (452)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred             CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcc-cCCEEECCCCcCCccChhhhcccCCCCEE
Confidence            34555555555555555555555555555555555555544444444443 55555555555554444445555555555


Q ss_pred             EccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCc
Q 041976          626 NLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINN  705 (901)
Q Consensus       626 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~  705 (901)
                      +|++|+++...+..|..+++|++|++++                        |...+.++.. .+..+++|++|++++|.
T Consensus       153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~------------------------~~~l~~i~~~-~~~~l~~L~~L~L~~n~  207 (452)
T 3zyi_A          153 WLRNNPIESIPSYAFNRVPSLMRLDLGE------------------------LKKLEYISEG-AFEGLFNLKYLNLGMCN  207 (452)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCC------------------------CTTCCEECTT-TTTTCTTCCEEECTTSC
T ss_pred             ECCCCCcceeCHhHHhcCCcccEEeCCC------------------------CCCccccChh-hccCCCCCCEEECCCCc
Confidence            5555555544444445555555555544                        3322222221 12445555555555555


Q ss_pred             cccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCC
Q 041976          706 FSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSL  785 (901)
Q Consensus       706 l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  785 (901)
                      +++. |. +                                         ..+++|++|+|++|.+++..|..|.++++|
T Consensus       208 l~~~-~~-~-----------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  244 (452)
T 3zyi_A          208 IKDM-PN-L-----------------------------------------TPLVGLEELEMSGNHFPEIRPGSFHGLSSL  244 (452)
T ss_dssp             CSSC-CC-C-----------------------------------------TTCTTCCEEECTTSCCSEECGGGGTTCTTC
T ss_pred             cccc-cc-c-----------------------------------------cccccccEEECcCCcCcccCcccccCccCC
Confidence            5431 21 0                                         014566777777777777777778888888


Q ss_pred             CeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCc
Q 041976          786 RLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLD  844 (901)
Q Consensus       786 ~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  844 (901)
                      ++|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus       245 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            88888888888877888888888888888888888777777888888888888888764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=2.7e-26  Score=246.04  Aligned_cols=247  Identities=24%  Similarity=0.263  Sum_probs=158.4

Q ss_pred             eeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCccc--CCcchhcCCCCccEEECCCCcc
Q 041976          531 LDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGT--IPECIGNFSPSLSVLDLRNNRL  608 (901)
Q Consensus       531 L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~~~~~~~~L~~L~L~~n~l  608 (901)
                      ++++++.++......++++++|++++|.++...+..+.++++|++|++++|.++..  .|..+..+. +|++|++++|.+
T Consensus        12 l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n~i   90 (306)
T 2z66_A           12 IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT-SLKYLDLSFNGV   90 (306)
T ss_dssp             EECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS-CCCEEECCSCSE
T ss_pred             EEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccc-ccCEEECCCCcc
Confidence            33333333333333345666666666666654444566677777777777776522  234444443 666666666666


Q ss_pred             cccCCcCccCCCccCEEEccCCcccccCC-ccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcc-cCCC
Q 041976          609 NGSIPGTFAESNWLRSLNLNNNELGGAIP-QSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHG-SVRE  686 (901)
Q Consensus       609 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~  686 (901)
                      +. +|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+.
T Consensus        91 ~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  169 (306)
T 2z66_A           91 IT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD  169 (306)
T ss_dssp             EE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred             cc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence            53 34446666666666666666665443 345556666666666666555555555555555555555554432 1111


Q ss_pred             CCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEc
Q 041976          687 FEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDF  766 (901)
Q Consensus       687 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L  766 (901)
                      ..  ..                                                                 +++|++|++
T Consensus       170 ~~--~~-----------------------------------------------------------------l~~L~~L~L  182 (306)
T 2z66_A          170 IF--TE-----------------------------------------------------------------LRNLTFLDL  182 (306)
T ss_dssp             CC--TT-----------------------------------------------------------------CTTCCEEEC
T ss_pred             HH--hh-----------------------------------------------------------------CcCCCEEEC
Confidence            11  12                                                                 355667777


Q ss_pred             cccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCC-CCCeeeCCCCcCcc
Q 041976          767 SSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLT-SLSVLNLSHNRLDG  845 (901)
Q Consensus       767 s~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g  845 (901)
                      ++|++++..|..+.++++|++|+|++|++++..+..|..+++|+.|||++|++++..|..+..++ +|++|+|++|++++
T Consensus       183 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            77777767777788888899999999998888777888888999999999999888888888884 89999999999886


Q ss_pred             C
Q 041976          846 P  846 (901)
Q Consensus       846 ~  846 (901)
                      .
T Consensus       263 ~  263 (306)
T 2z66_A          263 T  263 (306)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=7.8e-26  Score=255.46  Aligned_cols=229  Identities=23%  Similarity=0.309  Sum_probs=141.6

Q ss_pred             CCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEE
Q 041976          546 PSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSL  625 (901)
Q Consensus       546 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  625 (901)
                      +++++.|++++|++++..+..|.++++|++|++++|.+++..+..+..+. +|++|+|++|++++..+..|..+++|++|
T Consensus        63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  141 (440)
T 3zyj_A           63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA-NLNTLELFDNRLTTIPNGAFVYLSKLKEL  141 (440)
T ss_dssp             CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS-SCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred             CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc-cCCEEECCCCcCCeeCHhHhhccccCcee
Confidence            45556666666666655556666666666666666666544444454444 66666666666655555555566666666


Q ss_pred             EccCCcccccCCccccCCCcccEEeCCCCc-CccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCC
Q 041976          626 NLNNNELGGAIPQSLVNCTKVEVLDIGNIK-INDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSIN  704 (901)
Q Consensus       626 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n  704 (901)
                      +|++|+++...+..|..+++|++|++++|+ +....+..|.++++                          |++|++++|
T Consensus       142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~--------------------------L~~L~L~~n  195 (440)
T 3zyj_A          142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN--------------------------LRYLNLAMC  195 (440)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS--------------------------CCEEECTTS
T ss_pred             eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc--------------------------cCeecCCCC
Confidence            666666655555555555555555555532 22222333444444                          445555554


Q ss_pred             ccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCC
Q 041976          705 NFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHS  784 (901)
Q Consensus       705 ~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  784 (901)
                      .++. +|. +                                         ..+++|++|+|++|++++..|..|.++++
T Consensus       196 ~l~~-~~~-~-----------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  232 (440)
T 3zyj_A          196 NLRE-IPN-L-----------------------------------------TPLIKLDELDLSGNHLSAIRPGSFQGLMH  232 (440)
T ss_dssp             CCSS-CCC-C-----------------------------------------TTCSSCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             cCcc-ccc-c-----------------------------------------CCCcccCEEECCCCccCccChhhhccCcc
Confidence            4431 221 0                                         01355667777777777666777777778


Q ss_pred             CCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCc
Q 041976          785 LRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLD  844 (901)
Q Consensus       785 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  844 (901)
                      |++|+|++|++++..+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus       233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            888888888887777777777888888888888887777777777788888888888764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=2.9e-27  Score=259.08  Aligned_cols=285  Identities=22%  Similarity=0.239  Sum_probs=181.6

Q ss_pred             CCCCCCCCcCccceeecCCCCeEEEEEcCCCCCCCCCCCCcccccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCC
Q 041976           61 SWKKDTNCCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLS  140 (901)
Q Consensus        61 ~w~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls  140 (901)
                      .|.....+|.|.|+ |+-          +++.+. .+|.  .+  .++|++|++++|.+++. .+..+.++++|++|+|+
T Consensus        22 ~~~~~~~~C~~~~~-c~~----------~~~~l~-~iP~--~~--~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~   84 (353)
T 2z80_A           22 SSNQASLSCDRNGI-CKG----------SSGSLN-SIPS--GL--TEAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLT   84 (353)
T ss_dssp             -----CCEECTTSE-EEC----------CSTTCS-SCCT--TC--CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECT
T ss_pred             CCCccCCCCCCCeE-eeC----------CCCCcc-cccc--cc--cccCcEEECCCCcCccc-CHHHhccCCCCCEEECC
Confidence            35455677999988 753          334444 3443  33  25899999999999873 34478999999999999


Q ss_pred             CCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCC--CCCCCC
Q 041976          141 DSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFP--ANNWTS  218 (901)
Q Consensus       141 ~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~--~~~~~~  218 (901)
                      +|.+++..|..++.+              ++|++|++++|.+++..+..++++++|++|++++| .+.+..+  .+..++
T Consensus        85 ~n~l~~~~~~~~~~l--------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~  149 (353)
T 2z80_A           85 SNGINTIEEDSFSSL--------------GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLT  149 (353)
T ss_dssp             TSCCCEECTTTTTTC--------------TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCT
T ss_pred             CCccCccCHhhcCCC--------------CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCC
Confidence            999987777788888              99999999999998766666889999999999998 6664322  356677


Q ss_pred             CcceeecCCC-CCccC-CccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEc
Q 041976          219 PIEYLDVSET-SFSEL-PDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDL  296 (901)
Q Consensus       219 ~L~~L~Ls~~-~l~~l-p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  296 (901)
                      +|++|++++| .+..+ |..++.+++|++|++++|.+.+..|..+.++++|++|++++|.++...+..+..+++|++|++
T Consensus       150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  229 (353)
T 2z80_A          150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL  229 (353)
T ss_dssp             TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEE
T ss_pred             CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEEC
Confidence            7777777777 35555 345667777777777777777666677777777777777777765332233445667777777


Q ss_pred             cCCcCcccCCC-C---CCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCcc
Q 041976          297 SSNSFFGEIPD-I---FNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQL  372 (901)
Q Consensus       297 s~n~l~~~~~~-~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  372 (901)
                      ++|.+++..+. +   ...+.++.++++++.+.+.                   .+. .+|..+..+++|++|++++|++
T Consensus       230 ~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~-------------------~l~-~l~~~l~~l~~L~~L~Ls~N~l  289 (353)
T 2z80_A          230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE-------------------SLF-QVMKLLNQISGLLELEFSRNQL  289 (353)
T ss_dssp             ESCBCTTCCCC------CCCCCCEEEEESCBCCHH-------------------HHH-HHHHHHHTCTTCCEEECCSSCC
T ss_pred             CCCccccccccccccccccchhhccccccccccCc-------------------chh-hhHHHHhcccCCCEEECCCCCC
Confidence            77766654332 1   1233444444444444321                   000 2344455555555555555555


Q ss_pred             ccccCCC--CCCCCCEEEccCccCCCC
Q 041976          373 SGHIDEF--PSKSLQNIYLSNNRLQGS  397 (901)
Q Consensus       373 ~~~~~~~--~~~~L~~L~L~~n~l~~~  397 (901)
                      +...+..  .+++|++|++++|.+.+.
T Consensus       290 ~~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          290 KSVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CccCHHHHhcCCCCCEEEeeCCCccCc
Confidence            5332221  345555666666655544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=2.3e-26  Score=248.17  Aligned_cols=277  Identities=17%  Similarity=0.226  Sum_probs=225.6

Q ss_pred             cCCCCCC--CCCCcCccceeecCCCCeEEEEEcCCCCCCCC----CCCCcccccCccCceEeCCCCCCCCCcCCccccCC
Q 041976           58 KMISWKK--DTNCCSWDGVTCDMATGNVISLDLSCSWLHGN----IPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRF  131 (901)
Q Consensus        58 ~l~~w~~--~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~g~----~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l  131 (901)
                      .+..|..  ..++|.|.++.|....+.     -..+...|.    ++....-...+++++|+|++|.++.  +|..++++
T Consensus        31 aLl~~k~~~~~~~~~~~~~w~~~~~~~-----~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~--lp~~l~~l  103 (328)
T 4fcg_A           31 VLSQWQRHYNADRNRWHSAWRQANSNN-----PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ--FPDQAFRL  103 (328)
T ss_dssp             HHHHHHHHHHHCCTTHHHHHHHHTTTC-----TTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSS--CCSCGGGG
T ss_pred             HHHHHHHhccCCchhhhhhhccccccc-----ccccccCCcchhhhHHHHhcccccceeEEEccCCCchh--cChhhhhC
Confidence            5677875  357899999888422110     000111111    0000012345899999999999984  89999999


Q ss_pred             CCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccC
Q 041976          132 RNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKF  211 (901)
Q Consensus       132 ~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~  211 (901)
                      ++|++|+|++|.+. .+|..++.+              ++|++|++++|.+. .+|..++++++|++|++++| .+.+.+
T Consensus       104 ~~L~~L~L~~n~l~-~lp~~~~~l--------------~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n-~~~~~~  166 (328)
T 4fcg_A          104 SHLQHMTIDAAGLM-ELPDTMQQF--------------AGLETLTLARNPLR-ALPASIASLNRLRELSIRAC-PELTEL  166 (328)
T ss_dssp             TTCSEEEEESSCCC-CCCSCGGGG--------------TTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE-TTCCCC
T ss_pred             CCCCEEECCCCCcc-chhHHHhcc--------------CCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC-CCcccc
Confidence            99999999999998 899999999              99999999999998 78999999999999999998 777777


Q ss_pred             CCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCC
Q 041976          212 PANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQL  291 (901)
Q Consensus       212 ~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  291 (901)
                      |..     +...        .++..++.+++|++|++++|.+. .+|..++++++|++|++++|.+++ +|..++.+++|
T Consensus       167 p~~-----~~~~--------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L  231 (328)
T 4fcg_A          167 PEP-----LAST--------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL  231 (328)
T ss_dssp             CSC-----SEEE--------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC
T ss_pred             Chh-----Hhhc--------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC
Confidence            721     0000        12234566999999999999998 788899999999999999999994 67789999999


Q ss_pred             CEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCC
Q 041976          292 TYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDN  370 (901)
Q Consensus       292 ~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  370 (901)
                      ++|++++|.+.+.+|. +..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.+++|+.+++..+
T Consensus       232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            9999999999988887 889999999999999999999999999999999999999999999999999999999998877


Q ss_pred             ccc
Q 041976          371 QLS  373 (901)
Q Consensus       371 ~l~  373 (901)
                      .+.
T Consensus       312 ~~~  314 (328)
T 4fcg_A          312 LQA  314 (328)
T ss_dssp             GSC
T ss_pred             HHH
Confidence            554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=4.4e-28  Score=260.28  Aligned_cols=246  Identities=25%  Similarity=0.259  Sum_probs=175.9

Q ss_pred             CcEEEccCCccccccccccccCCCCCEEECCCCcCc-ccCCcchh-------cCCCCccEEECCCCcccccCCcCc--cC
Q 041976          549 LRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLN-GTIPECIG-------NFSPSLSVLDLRNNRLNGSIPGTF--AE  618 (901)
Q Consensus       549 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~-------~~~~~L~~L~L~~n~l~~~~~~~~--~~  618 (901)
                      |+++++++|.+  .+|..+...  |++|++++|.+. ..+|..+.       .+. +|++|++++|++++.+|..+  ..
T Consensus        45 L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~  119 (312)
T 1wwl_A           45 LEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGIS-GLQELTLENLEVTGTAPPPLLEAT  119 (312)
T ss_dssp             CTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTS-CCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred             ceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcC-CccEEEccCCcccchhHHHHHHhc
Confidence            44445555555  344444333  566666666663 33444433       344 77777777777776666655  67


Q ss_pred             CCccCEEEccCCcccccCCccccCC-----CcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccC--CCCCCCC
Q 041976          619 SNWLRSLNLNNNELGGAIPQSLVNC-----TKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSV--REFEPKE  691 (901)
Q Consensus       619 l~~L~~L~Ls~N~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~--~~~~~~~  691 (901)
                      +++|++|++++|++++. |..+..+     ++|++|++++|++.+..|..++.+++|++|++++|++.+.+  +....+.
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  198 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL  198 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred             CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence            77777777777777766 6666655     77888888888887777777778888888888888766542  1122235


Q ss_pred             CCCCCcEEEcCCCccccC--CcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEcccc
Q 041976          692 SFPKLRILDLSINNFSGY--LPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSN  769 (901)
Q Consensus       692 ~l~~L~~L~Ls~n~l~~~--~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N  769 (901)
                      .+++|++|++++|.+++.  ++..++                                        ..+++|++|++++|
T Consensus       199 ~l~~L~~L~L~~N~l~~~~~~~~~~~----------------------------------------~~l~~L~~L~Ls~N  238 (312)
T 1wwl_A          199 KFPTLQVLALRNAGMETPSGVCSALA----------------------------------------AARVQLQGLDLSHN  238 (312)
T ss_dssp             SCTTCCEEECTTSCCCCHHHHHHHHH----------------------------------------HTTCCCSEEECTTS
T ss_pred             cCCCCCEEECCCCcCcchHHHHHHHH----------------------------------------hcCCCCCEEECCCC
Confidence            678888888888888631  111111                                        12577899999999


Q ss_pred             ccccccc-hhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCcc
Q 041976          770 GFDGEIS-QVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDG  845 (901)
Q Consensus       770 ~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  845 (901)
                      ++++.+| ..+..+++|++|+|++|+++ .+|..+.  ++|++|||++|++++. |. +..+++|++|++++|++++
T Consensus       239 ~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          239 SLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             cCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            9998775 45677899999999999999 6777776  8999999999999987 66 8999999999999999986

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=3.3e-29  Score=295.47  Aligned_cols=431  Identities=15%  Similarity=0.099  Sum_probs=294.6

Q ss_pred             CcCccceeecCCCCeEEEEEcCCCCCCCCCCCCcccccCccCceEeCCCCCCCC--CcCCcccc------------CCCC
Q 041976           68 CCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDY--SEISSGFS------------RFRN  133 (901)
Q Consensus        68 ~c~w~gv~c~~~~~~v~~l~L~~~~~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~--~~~~~~l~------------~l~~  133 (901)
                      |++|.++.+..  .+  .+.+... .....+.  .+..+++|++|+++++....  ..+|..++            .+++
T Consensus        41 ck~W~~~~~~~--~~--~l~~~~~-~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  113 (592)
T 3ogk_B           41 CRRWFKIDSET--RE--HVTMALC-YTATPDR--LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ  113 (592)
T ss_dssp             CHHHHHHHHHH--CC--EEEESCG-GGSCHHH--HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTT
T ss_pred             hHHHHHhhhcc--cc--EEEEeec-cccChHH--HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCC
Confidence            45899986542  12  2233322 1222222  45678999999998854210  01333333            7899


Q ss_pred             CceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCc-CCC-CCccccCCCCCCCEEeCCCCCCCCccC
Q 041976          134 LTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCI-LQG-NFPINIFHLPNPQMIRLSQNPSLAGKF  211 (901)
Q Consensus       134 L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~-~~~-~~p~~l~~l~~L~~L~L~~n~~l~~~~  211 (901)
                      |++|+|++|.+++..+..++..            ++.+|++|++++|. +.. .++....++++|++|+|++| .+++.-
T Consensus       114 L~~L~L~~~~i~~~~~~~l~~~------------~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~~~  180 (592)
T 3ogk_B          114 LKSVHFRRMIVSDLDLDRLAKA------------RADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES-SFSEKD  180 (592)
T ss_dssp             CCEEEEESCBCCHHHHHHHHHH------------HGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTC-EEECCC
T ss_pred             CCeEEeeccEecHHHHHHHHHh------------ccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccc-cccCcc
Confidence            9999999998776555544431            11349999999886 221 12333457899999999999 655431


Q ss_pred             ----CC-CCCCCCcceeecCCCCCc-----cCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCC---
Q 041976          212 ----PA-NNWTSPIEYLDVSETSFS-----ELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFS---  278 (901)
Q Consensus       212 ----~~-~~~~~~L~~L~Ls~~~l~-----~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~---  278 (901)
                          +. ...+++|++|++++|.++     .++..+..+++|++|++++|.+.+ +|..+.++++|++|+++.....   
T Consensus       181 ~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~  259 (592)
T 3ogk_B          181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGM  259 (592)
T ss_dssp             SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTC
T ss_pred             hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccch
Confidence                11 245788999999999886     334456688999999999988875 6777888999999999854332   


Q ss_pred             CCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCCC-ccccCCcCCcEEECcCCcCcccCChhh
Q 041976          279 GHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIP-SHGSRLQNLVLIRLNNNSFSGTIPSWL  356 (901)
Q Consensus       279 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l  356 (901)
                      ...+..+..+++|++|+++++... .++. +..+++|++|++++|.+++... ..+..+++|++|+++++...+.++...
T Consensus       260 ~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~  338 (592)
T 3ogk_B          260 PEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA  338 (592)
T ss_dssp             TTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH
T ss_pred             HHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHH
Confidence            234456778889999999876433 3344 6678899999999998764433 346788999999998443333444555


Q ss_pred             cCCCCCcEEEccC-----------CccccccC-C--CCCCCCCEEEccCccCCCCCchhhhc-ccccCceecc----cCc
Q 041976          357 FSLPLLEYVRLSD-----------NQLSGHID-E--FPSKSLQNIYLSNNRLQGSIPSSIFE-LVNLTDLQLD----SNN  417 (901)
Q Consensus       357 ~~l~~L~~L~L~~-----------n~l~~~~~-~--~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~  417 (901)
                      ..+++|++|++++           +.+++... .  ..+++|++|+++.+.+++..+..+.. +++|+.|+++    .|.
T Consensus       339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~  418 (592)
T 3ogk_B          339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREER  418 (592)
T ss_dssp             HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSC
T ss_pred             HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcc
Confidence            6788999999993           44443211 1  14788999999888888777777765 8899999996    567


Q ss_pred             CCCccc----hhhhhhcCCCcEEEccCCc--cccccccccCCCCCCccEEecCCcCCC--CCChhhccCCCCCEEeCCCC
Q 041976          418 FSGIAE----PYMFAKLIKLKYLYLSHNS--LSLGNTFKIDSPFPKFSYLSLSACNIS--AFPRFLRTQDELSYLDLSEN  489 (901)
Q Consensus       418 l~~~~~----~~~l~~l~~L~~L~L~~n~--l~~~~~~~~~~~~~~L~~L~l~~~~l~--~lp~~l~~~~~L~~L~ls~n  489 (901)
                      +++...    +..+.++++|++|+++.|.  +++.....+...+++|++|++++|+++  .++..+..+++|++|++++|
T Consensus       419 l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n  498 (592)
T 3ogk_B          419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC  498 (592)
T ss_dssp             CSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred             ccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence            776421    2346778999999997543  554444444445788999999999886  35566778899999999999


Q ss_pred             cccccCChhhhhcCCCCccEEEcCCCccCCcc
Q 041976          490 KIDGQIPSWISEIGKDSLSYVNLSHNFITKMK  521 (901)
Q Consensus       490 ~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~  521 (901)
                      .+++.....+. ..+++|+.|++++|+++...
T Consensus       499 ~l~~~~~~~~~-~~l~~L~~L~ls~n~it~~~  529 (592)
T 3ogk_B          499 CFSERAIAAAV-TKLPSLRYLWVQGYRASMTG  529 (592)
T ss_dssp             CCBHHHHHHHH-HHCSSCCEEEEESCBCCTTC
T ss_pred             CCcHHHHHHHH-HhcCccCeeECcCCcCCHHH
Confidence            87655443332 35688999999999887653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=3.3e-26  Score=245.46  Aligned_cols=250  Identities=20%  Similarity=0.257  Sum_probs=161.0

Q ss_pred             cCccceeecCCCCeEEEEEcCCCCCCCCCCCCcccccCccCceEeCCCCCCCCCcCCc-cccCCCCCceeeCCCCcCCC-
Q 041976           69 CSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISS-GFSRFRNLTHFSLSDSNINC-  146 (901)
Q Consensus        69 c~w~gv~c~~~~~~v~~l~L~~~~~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~-~l~~l~~L~~L~Ls~~~~~~-  146 (901)
                      |.|.+|.|...            ++. .+|.  .+  .++|++|++++|.++.  +|. .++++++|++|+|++|.+.. 
T Consensus         7 C~~~~l~c~~~------------~l~-~ip~--~~--~~~l~~L~L~~n~l~~--i~~~~~~~l~~L~~L~L~~n~l~~~   67 (306)
T 2z66_A            7 CSGTEIRCNSK------------GLT-SVPT--GI--PSSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSSNGLSFK   67 (306)
T ss_dssp             EETTEEECCSS------------CCS-SCCS--CC--CTTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCEE
T ss_pred             eCCCEEEcCCC------------Ccc-cCCC--CC--CCCCCEEECCCCccCc--cCHhHhhccccCCEEECCCCccCcc
Confidence            78999998642            222 2332  22  2578888888888875  554 46788888888888887762 


Q ss_pred             -CCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeec
Q 041976          147 -KIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDV  225 (901)
Q Consensus       147 -~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~L  225 (901)
                       ..|..+..+              ++|++|++++|.+. .+|..+..+++|++|++++| .+.+..+             
T Consensus        68 ~~~~~~~~~~--------------~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n-~l~~~~~-------------  118 (306)
T 2z66_A           68 GCCSQSDFGT--------------TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHS-NLKQMSE-------------  118 (306)
T ss_dssp             EEEEHHHHSC--------------SCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTS-EEESSTT-------------
T ss_pred             cCcccccccc--------------cccCEEECCCCccc-cChhhcCCCCCCCEEECCCC-ccccccc-------------
Confidence             224444445              67777777777665 34555666666666666666 3332211             


Q ss_pred             CCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCC-CCCccccCCCCCCEEEccCCcCccc
Q 041976          226 SETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSG-HIPSSLSNLVQLTYLDLSSNSFFGE  304 (901)
Q Consensus       226 s~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~  304 (901)
                              +..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++ ..|..+..+++|++|++++|.+++.
T Consensus       119 --------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  190 (306)
T 2z66_A          119 --------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL  190 (306)
T ss_dssp             --------TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred             --------chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCc
Confidence                    0245666677777777776666666666667777777777777665 4566666777777777777777666


Q ss_pred             CCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCC-CCcEEEccCCcccc
Q 041976          305 IPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLP-LLEYVRLSDNQLSG  374 (901)
Q Consensus       305 ~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~  374 (901)
                      .+. +..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..++ +|++|++++|.+.+
T Consensus       191 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          191 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            554 66666777777777776665555666667777777777777666666666663 66666666665543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=4.5e-26  Score=241.57  Aligned_cols=236  Identities=19%  Similarity=0.173  Sum_probs=132.8

Q ss_pred             CCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCc-ccccCCcCccCCCccCE
Q 041976          546 PSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNR-LNGSIPGTFAESNWLRS  624 (901)
Q Consensus       546 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  624 (901)
                      ++++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+. +|++|++++|. +....|..|..+++|++
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~l~~~~~~~~~~l~~L~~  109 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA-LLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc-CCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence            34455555555555544444455555555555555555544444444443 55555555554 44443444455555555


Q ss_pred             EEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCC
Q 041976          625 LNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSIN  704 (901)
Q Consensus       625 L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n  704 (901)
                      |++++|++++..|..|..+++|++|++++|++.+..+..+..                          +++|++|++++|
T Consensus       110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------l~~L~~L~l~~n  163 (285)
T 1ozn_A          110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD--------------------------LGNLTHLFLHGN  163 (285)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------------------CTTCCEEECCSS
T ss_pred             EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc--------------------------CCCccEEECCCC
Confidence            555555554444444444444444444444444444433444                          455555555555


Q ss_pred             ccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCC
Q 041976          705 NFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHS  784 (901)
Q Consensus       705 ~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  784 (901)
                      .+++..+..+ .                                        .+++|++|++++|.+++..|..|+++++
T Consensus       164 ~l~~~~~~~~-~----------------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~  202 (285)
T 1ozn_A          164 RISSVPERAF-R----------------------------------------GLHSLDRLLLHQNRVAHVHPHAFRDLGR  202 (285)
T ss_dssp             CCCEECTTTT-T----------------------------------------TCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             cccccCHHHh-c----------------------------------------CccccCEEECCCCcccccCHhHccCccc
Confidence            5543222111 0                                        1355667777777777777777778888


Q ss_pred             CCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCCC
Q 041976          785 LRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHG  850 (901)
Q Consensus       785 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~  850 (901)
                      |++|++++|++++..+..+..+++|+.|+|++|++.+..+.. .-...++.+..+.+.+.+..|..
T Consensus       203 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             ccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence            888888888888777777888888888888888887543321 11233455566777777777754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.93  E-value=3.2e-28  Score=286.97  Aligned_cols=240  Identities=15%  Similarity=0.061  Sum_probs=142.0

Q ss_pred             CCccccCCCCCceeeCCCCcC---CCCCCcccccccccccchhhcc-cCCCCccEEEcCCCcCCCCCccccCC-CCC-CC
Q 041976          124 ISSGFSRFRNLTHFSLSDSNI---NCKIPYEISFLKMSTVVLDSLK-NLSSSLTSLSLSDCILQGNFPINIFH-LPN-PQ  197 (901)
Q Consensus       124 ~~~~l~~l~~L~~L~Ls~~~~---~~~~p~~l~~l~~~~~~~~~~~-~l~~~L~~L~Ls~~~~~~~~p~~l~~-l~~-L~  197 (901)
                      .+..+.++++|++|+|+++..   .+.+|...+..  ....+..+. .+ ++|++|+|++|.+++..+..++. +++ |+
T Consensus        65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~--~~~~l~~l~~~~-~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~  141 (592)
T 3ogk_B           65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGY--VTPWVTEISNNL-RQLKSVHFRRMIVSDLDLDRLAKARADDLE  141 (592)
T ss_dssp             HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCB--CHHHHHHHHHHC-TTCCEEEEESCBCCHHHHHHHHHHHGGGCC
T ss_pred             hHHHHHhCCCCeEEEecCCcchhhccccccccccc--chHHHHHHHhhC-CCCCeEEeeccEecHHHHHHHHHhccccCc
Confidence            345567899999999988653   24556554432  111112222 33 88999999999888777777766 444 99


Q ss_pred             EEeCCCCCCCCc-cCCC-CCCCCCcceeecCCCCCccC-----CccccCCCCcCEEECCCCCCc----cCCCccccCCCC
Q 041976          198 MIRLSQNPSLAG-KFPA-NNWTSPIEYLDVSETSFSEL-----PDSIGNLKLLGRLMLGYSQFV----GPVPASLGNLTQ  266 (901)
Q Consensus       198 ~L~L~~n~~l~~-~~~~-~~~~~~L~~L~Ls~~~l~~l-----p~~l~~l~~L~~L~L~~n~~~----~~~p~~l~~l~~  266 (901)
                      +|++++|..+.. .++. ...+++|++|++++|.+...     +..+..+++|++|++++|.+.    +.++..+.++++
T Consensus       142 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~  221 (592)
T 3ogk_B          142 TLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS  221 (592)
T ss_dssp             EEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTT
T ss_pred             EEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCC
Confidence            999998832211 1111 12456777777777765432     223445677777777777765    223334456677


Q ss_pred             CCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCc---ccC-CCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEE
Q 041976          267 LTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFF---GEI-PDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIR  342 (901)
Q Consensus       267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~---~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  342 (901)
                      |++|++++|.+.+ +|..+..+++|++|+++.....   ... ..+..+++|+.|+++++.. +.+|..+..+++|++|+
T Consensus       222 L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~  299 (592)
T 3ogk_B          222 LVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLD  299 (592)
T ss_dssp             CCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEE
T ss_pred             CcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEe
Confidence            7777777776664 5566667777777777643221   011 1245566666666665432 24555566666666666


Q ss_pred             CcCCcCcccCC-hhhcCCCCCcEEEcc
Q 041976          343 LNNNSFSGTIP-SWLFSLPLLEYVRLS  368 (901)
Q Consensus       343 L~~n~l~~~~~-~~l~~l~~L~~L~L~  368 (901)
                      +++|.+++... ..+..+++|++|+++
T Consensus       300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          300 LLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             ETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             cCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            66666543322 234556666666665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=1.8e-25  Score=236.95  Aligned_cols=212  Identities=24%  Similarity=0.189  Sum_probs=125.3

Q ss_pred             CCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECC
Q 041976          170 SSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLG  249 (901)
Q Consensus       170 ~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~  249 (901)
                      ++|++|++++|.+++..|..+..+++|++|++++|..+....+                      ..+..+++|++|+++
T Consensus        56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~----------------------~~~~~l~~L~~L~l~  113 (285)
T 1ozn_A           56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP----------------------ATFHGLGRLHTLHLD  113 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT----------------------TTTTTCTTCCEEECT
T ss_pred             CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH----------------------HHhcCCcCCCEEECC
Confidence            4444444444444444444455555555555555511222212                      445555566666666


Q ss_pred             CCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCC
Q 041976          250 YSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPI  328 (901)
Q Consensus       250 ~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~  328 (901)
                      +|.+.+..|..+.++++|++|++++|.+++..+..++.+++|++|++++|++++..+. +..+++|++|++++|.+++..
T Consensus       114 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  193 (285)
T 1ozn_A          114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH  193 (285)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC
Confidence            6666555555666666666666666666655555566677777777777776665554 666777777777777777666


Q ss_pred             CccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCC-CCCCCCEEEccCccCCCCCchhhh
Q 041976          329 PSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF-PSKSLQNIYLSNNRLQGSIPSSIF  403 (901)
Q Consensus       329 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~  403 (901)
                      |..+..+++|++|++++|.+++..+..+..+++|++|++++|.+....+.. ....++.+....+.+....|..+.
T Consensus       194 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~  269 (285)
T 1ozn_A          194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLA  269 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGT
T ss_pred             HhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHhC
Confidence            777777777777777777777666666777777777777777765432221 111223333444444445555443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=2.5e-25  Score=252.26  Aligned_cols=251  Identities=21%  Similarity=0.199  Sum_probs=212.3

Q ss_pred             CCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCC
Q 041976          573 LDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIG  652 (901)
Q Consensus       573 L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  652 (901)
                      ...++.++..++ .+|..+.   +++++|+|++|++++..+..|..+++|++|+|++|++++..+..|.++++|++|+++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            456778888877 6776543   489999999999999889999999999999999999999988999999999999999


Q ss_pred             CCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCccc
Q 041976          653 NIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLR  732 (901)
Q Consensus       653 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~  732 (901)
                      +|++++..+..|..+++|++|++++|++....+..  +..+++|+.|++++|+..+.++...+.                
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~----------------  193 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYA--FNRVPSLMRLDLGELKKLEYISEGAFE----------------  193 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTT--TTTCTTCCEEECCCCTTCCEECTTTTT----------------
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhH--HhcCCcccEEeCCCCCCccccChhhcc----------------
Confidence            99999988888999999999999999998654433  378999999999997655555432211                


Q ss_pred             ccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEE
Q 041976          733 YLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESL  812 (901)
Q Consensus       733 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L  812 (901)
                                              .+++|++|+|++|++++. | .+..+++|++|+|++|++++..|..|.++++|+.|
T Consensus       194 ------------------------~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  247 (452)
T 3zyi_A          194 ------------------------GLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL  247 (452)
T ss_dssp             ------------------------TCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEE
T ss_pred             ------------------------CCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEE
Confidence                                    157889999999999865 4 48889999999999999999999999999999999


Q ss_pred             eCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCCC-CCCCCcccccccCCcCCCCCC
Q 041976          813 DLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHG-PQFNTFQEDSYIGNLGLCGFP  871 (901)
Q Consensus       813 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~-~~~~~~~~~~~~~n~~lcg~~  871 (901)
                      +|++|++++..|..|..+++|++|+|++|++++..|.. ..+..+....+.+||.-|+|.
T Consensus       248 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          248 WVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             EeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            99999999999999999999999999999999655443 235566677778888777665

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=3.2e-25  Score=250.41  Aligned_cols=251  Identities=20%  Similarity=0.225  Sum_probs=207.6

Q ss_pred             CCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCC
Q 041976          573 LDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIG  652 (901)
Q Consensus       573 L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  652 (901)
                      ...++.+++.++ .+|..+.   ++++.|+|++|++++..+..|..+++|++|+|++|++++..+..|.++++|++|+++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            456777777777 6776554   488999999999998888889999999999999999998888889999999999999


Q ss_pred             CCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCccc
Q 041976          653 NIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLR  732 (901)
Q Consensus       653 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~  732 (901)
                      +|+++...+..|..+++|++|++++|++....+..  +..+++|++|++++|+..+.++...+.                
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~----------------  182 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYA--FNRIPSLRRLDLGELKRLSYISEGAFE----------------  182 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTT--TTTCTTCCEEECCCCTTCCEECTTTTT----------------
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHH--hhhCcccCEeCCCCCCCcceeCcchhh----------------
Confidence            99998888888889999999999999987654433  367889999999986655544432211                


Q ss_pred             ccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEE
Q 041976          733 YLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESL  812 (901)
Q Consensus       733 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L  812 (901)
                                              .+++|++|++++|+++. +| .+..+++|++|+|++|++++..|..|.++++|+.|
T Consensus       183 ------------------------~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  236 (440)
T 3zyj_A          183 ------------------------GLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL  236 (440)
T ss_dssp             ------------------------TCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             ------------------------cccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEE
Confidence                                    15788999999999984 44 48899999999999999999999999999999999


Q ss_pred             eCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCCC-CCCCCcccccccCCcCCCCCC
Q 041976          813 DLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHG-PQFNTFQEDSYIGNLGLCGFP  871 (901)
Q Consensus       813 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~-~~~~~~~~~~~~~n~~lcg~~  871 (901)
                      +|++|++++..|..|..+++|++|+|++|++++..|.. ..+..+....+.+||.-|+|.
T Consensus       237 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             ECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred             ECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence            99999999999999999999999999999999655443 345566667777887777653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=3.3e-25  Score=257.05  Aligned_cols=291  Identities=20%  Similarity=0.253  Sum_probs=172.8

Q ss_pred             cCCCCCCCCCCcCccceeecC------CCCeEEEEEcCCCCCCCCCCCCcccccCccCceEeCCCCCCCCCcCCccccCC
Q 041976           58 KMISWKKDTNCCSWDGVTCDM------ATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRF  131 (901)
Q Consensus        58 ~l~~w~~~~~~c~w~gv~c~~------~~~~v~~l~L~~~~~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l  131 (901)
                      .++.|..+.+||.|+|..|.-      ....++.|+++++.+. .+|.  .+.  ++|++|++++|.++.  +|.   .+
T Consensus        11 ~w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~--~l~--~~L~~L~L~~N~l~~--lp~---~l   80 (622)
T 3g06_A           11 VWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPD--CLP--AHITTLVIPDNNLTS--LPA---LP   80 (622)
T ss_dssp             HHHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCS--CCC--TTCSEEEECSCCCSC--CCC---CC
T ss_pred             HHHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccCh--hhC--CCCcEEEecCCCCCC--CCC---cC
Confidence            577888788999997754421      0123555666665555 3333  222  455555555555543  343   34


Q ss_pred             CCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccC
Q 041976          132 RNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKF  211 (901)
Q Consensus       132 ~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~  211 (901)
                      ++|++|+|++|.++ .+|.   .+              ++|++|++++|.+++                          +
T Consensus        81 ~~L~~L~Ls~N~l~-~lp~---~l--------------~~L~~L~Ls~N~l~~--------------------------l  116 (622)
T 3g06_A           81 PELRTLEVSGNQLT-SLPV---LP--------------PGLLELSIFSNPLTH--------------------------L  116 (622)
T ss_dssp             TTCCEEEECSCCCS-CCCC---CC--------------TTCCEEEECSCCCCC--------------------------C
T ss_pred             CCCCEEEcCCCcCC-cCCC---CC--------------CCCCEEECcCCcCCC--------------------------C
Confidence            55555555555544 2333   22              444555555444443                          2


Q ss_pred             CCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCC
Q 041976          212 PANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQL  291 (901)
Q Consensus       212 ~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  291 (901)
                      |.  .+++|++|++++|.++.+|..   +++|++|++++|.+.+ +|.   .+++|+.|++++|.+++ +|   ..+++|
T Consensus       117 ~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L  183 (622)
T 3g06_A          117 PA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGL  183 (622)
T ss_dssp             CC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTC
T ss_pred             CC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCC
Confidence            21  344555555555555555543   2566666666666653 332   23556666777666663 34   345667


Q ss_pred             CEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCc
Q 041976          292 TYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQ  371 (901)
Q Consensus       292 ~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  371 (901)
                      ++|++++|.+++..+   ..++|+.|++++|.++. +|..   +++|++|++++|.+++ +|   ..+++|+.|++++|.
T Consensus       184 ~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~-l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~  252 (622)
T 3g06_A          184 QELSVSDNQLASLPT---LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNR  252 (622)
T ss_dssp             CEEECCSSCCSCCCC---CCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSC
T ss_pred             cEEECCCCCCCCCCC---ccchhhEEECcCCcccc-cCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCC
Confidence            777777776664322   23567777777777663 4432   3667777777777774 44   445777788888877


Q ss_pred             cccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccchhhhhhc
Q 041976          372 LSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKL  430 (901)
Q Consensus       372 l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l  430 (901)
                      ++....  .+++|+.|++++|.++ .+|..+..+++|+.|+|++|.+++..+ ..+..+
T Consensus       253 L~~lp~--~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~-~~l~~L  307 (622)
T 3g06_A          253 LTSLPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL-QALREI  307 (622)
T ss_dssp             CSCCCC--CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH-HHHHHH
T ss_pred             CCcCCc--ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH-HHHHhc
Confidence            774333  5677888888888887 667788888888888888888887654 445444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.9e-27  Score=255.35  Aligned_cols=244  Identities=21%  Similarity=0.223  Sum_probs=161.8

Q ss_pred             cCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcC-CCCCCcccc-------cccccccchhhcccCCCCccEEE
Q 041976          105 HLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNI-NCKIPYEIS-------FLKMSTVVLDSLKNLSSSLTSLS  176 (901)
Q Consensus       105 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~-~~~~p~~l~-------~l~~~~~~~~~~~~l~~~L~~L~  176 (901)
                      ..++|++|++++|.+   .+|..+...  |++|+|++|.+ .+.+|..+.       .+              ++|++|+
T Consensus        41 ~~~~L~~l~l~~n~l---~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l--------------~~L~~L~  101 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE---ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGI--------------SGLQELT  101 (312)
T ss_dssp             EEEECTTHHHHCCTT---CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTT--------------SCCCEEE
T ss_pred             cCCCceeEeeccccc---ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCc--------------CCccEEE
Confidence            345566666666666   255544433  66666666666 334554443       34              6666666


Q ss_pred             cCCCcCCCCCcccc--CCCCCCCEEeCCCCCCCCccCCC-CCCC-----CCcceeecCCCCCccCC-ccccCCCCcCEEE
Q 041976          177 LSDCILQGNFPINI--FHLPNPQMIRLSQNPSLAGKFPA-NNWT-----SPIEYLDVSETSFSELP-DSIGNLKLLGRLM  247 (901)
Q Consensus       177 Ls~~~~~~~~p~~l--~~l~~L~~L~L~~n~~l~~~~~~-~~~~-----~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~  247 (901)
                      +++|.+++..|..+  +.+++|++|++++| .+++. |. +..+     ++|++|++++|.+..++ ..++.+++|++|+
T Consensus       102 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  179 (312)
T 1wwl_A          102 LENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD  179 (312)
T ss_dssp             EEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEE
T ss_pred             ccCCcccchhHHHHHHhcCCCccEEEccCC-CCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEE
Confidence            66666666666654  66666666666666 55554 32 2222     56666666666666655 6778888888888


Q ss_pred             CCCCCCccC--CCccc--cCCCCCCEEECCCCcCCCC--CC-ccccCCCCCCEEEccCCcCcccCCC--CCCCCCCCEEE
Q 041976          248 LGYSQFVGP--VPASL--GNLTQLTLLHLMHNNFSGH--IP-SSLSNLVQLTYLDLSSNSFFGEIPD--IFNLTQVSFFD  318 (901)
Q Consensus       248 L~~n~~~~~--~p~~l--~~l~~L~~L~L~~n~l~~~--~p-~~l~~l~~L~~L~Ls~n~l~~~~~~--~~~l~~L~~L~  318 (901)
                      +++|++.+.  +|..+  .++++|++|++++|.+++.  ++ ..+..+++|++|++++|.+.+..|.  +..+++|++|+
T Consensus       180 Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  259 (312)
T 1wwl_A          180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN  259 (312)
T ss_dssp             CCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEE
T ss_pred             CCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEE
Confidence            888887654  23344  7788888888888887731  22 3345678888888888888876642  55678888888


Q ss_pred             CCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCcccc
Q 041976          319 LSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSG  374 (901)
Q Consensus       319 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  374 (901)
                      +++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|.+++
T Consensus       260 Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          260 LSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            8888887 6676665  7788888888888765 54 7777778888887777654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=3.8e-24  Score=248.15  Aligned_cols=262  Identities=23%  Similarity=0.280  Sum_probs=157.9

Q ss_pred             CCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCcc
Q 041976          480 ELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQF  559 (901)
Q Consensus       480 ~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l  559 (901)
                      .++.|++++|.++ .+|..+    .++|+.|++++|.++.++.                      .+++|++|++++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l----~~~L~~L~L~~N~l~~lp~----------------------~l~~L~~L~Ls~N~l   93 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCL----PAHITTLVIPDNNLTSLPA----------------------LPPELRTLEVSGNQL   93 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCC----CTTCSEEEECSCCCSCCCC----------------------CCTTCCEEEECSCCC
T ss_pred             CCcEEEecCCCcC-ccChhh----CCCCcEEEecCCCCCCCCC----------------------cCCCCCEEEcCCCcC
Confidence            3556666666555 334332    1445555555555544433                      345556666666655


Q ss_pred             ccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCcc
Q 041976          560 TGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQS  639 (901)
Q Consensus       560 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  639 (901)
                      ++ +|.   .+++|++|++++|.+++ +|.    ..++|+.|++++|++++ +|..   +++|++|++++|++++. |. 
T Consensus        94 ~~-lp~---~l~~L~~L~Ls~N~l~~-l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~-  158 (622)
T 3g06_A           94 TS-LPV---LPPGLLELSIFSNPLTH-LPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA-  158 (622)
T ss_dssp             SC-CCC---CCTTCCEEEECSCCCCC-CCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC-
T ss_pred             Cc-CCC---CCCCCCEEECcCCcCCC-CCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC-
Confidence            53 222   45566666666666652 333    12366666666666664 3322   35666666666666642 32 


Q ss_pred             ccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhH
Q 041976          640 LVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLN  719 (901)
Q Consensus       640 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~  719 (901)
                        ..++|+.|++++|++++. |   ..+++|+.|++++|.+.+ ++.     .+++|+.|++++|.++. +|.       
T Consensus       159 --~~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~-l~~-----~~~~L~~L~L~~N~l~~-l~~-------  218 (622)
T 3g06_A          159 --LPSELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLAS-LPT-----LPSELYKLWAYNNRLTS-LPA-------  218 (622)
T ss_dssp             --CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSS-CCC-------
T ss_pred             --ccCCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCC-CCC-----ccchhhEEECcCCcccc-cCC-------
Confidence              235566666666666553 2   345667777777776654 221     23567777777776652 221       


Q ss_pred             hhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCC
Q 041976          720 AMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQI  799 (901)
Q Consensus       720 ~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~  799 (901)
                                                           .+++|++|++++|.+++ +|   ..+++|++|+|++|+|++ +
T Consensus       219 -------------------------------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-l  256 (622)
T 3g06_A          219 -------------------------------------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-L  256 (622)
T ss_dssp             -------------------------------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-C
T ss_pred             -------------------------------------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-C
Confidence                                                 03567777888887775 44   446778888888888874 4


Q ss_pred             CccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCC
Q 041976          800 PSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPH  849 (901)
Q Consensus       800 p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~  849 (901)
                      |.   .+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|.
T Consensus       257 p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          257 PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            44   4677888888888888 5677788888888888888888877664

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=5.8e-27  Score=252.15  Aligned_cols=246  Identities=20%  Similarity=0.209  Sum_probs=132.8

Q ss_pred             CCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEE
Q 041976          547 SSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLN  626 (901)
Q Consensus       547 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  626 (901)
                      ++|++|++++|.+++..+..+..+++|++|++++|.+++..+  +..+. +|++|++++|++++..     ..++|++|+
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~-~L~~L~Ls~n~l~~l~-----~~~~L~~L~  105 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS-TLRTLDLNNNYVQELL-----VGPSIETLH  105 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCT-TCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcC-CCCEEECcCCcccccc-----CCCCcCEEE
Confidence            345555555555554444445555555555555555543322  33333 4555555555544321     124455555


Q ss_pred             ccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCcc
Q 041976          627 LNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNF  706 (901)
Q Consensus       627 Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l  706 (901)
                      +++|++++..+..   +++|++|++++|++++..+..+..+++|++|++++|.+.+..+... ...+++|++|++++|.+
T Consensus       106 l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l  181 (317)
T 3o53_A          106 AANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQYNFI  181 (317)
T ss_dssp             CCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG-GGGTTTCCEEECTTSCC
T ss_pred             CCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH-hhccCcCCEEECCCCcC
Confidence            5555554433322   2344555555555544444444444455555555554443322211 01234444444444444


Q ss_pred             ccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCC
Q 041976          707 SGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLR  786 (901)
Q Consensus       707 ~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~  786 (901)
                      ++                         ++...                  .+++|++|++++|++++..+ .+..+++|+
T Consensus       182 ~~-------------------------~~~~~------------------~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~  217 (317)
T 3o53_A          182 YD-------------------------VKGQV------------------VFAKLKTLDLSSNKLAFMGP-EFQSAAGVT  217 (317)
T ss_dssp             CE-------------------------EECCC------------------CCTTCCEEECCSSCCCEECG-GGGGGTTCS
T ss_pred             cc-------------------------ccccc------------------ccccCCEEECCCCcCCcchh-hhcccCccc
Confidence            32                         21100                  14667778888888875444 477778888


Q ss_pred             eEeCCCCcCCCCCCccccCCCCCCEEeCCCCccC-CCCCcCCcCCCCCCeeeCCC-CcCccCCCC
Q 041976          787 LLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVA-GKIPKPLTSLTSLSVLNLSH-NRLDGPIPH  849 (901)
Q Consensus       787 ~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~-N~l~g~iP~  849 (901)
                      +|+|++|++++ +|..+..+++|+.|+|++|+++ +.+|..+..+++|+.+++++ +.+.|..|.
T Consensus       218 ~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          218 WISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             EEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             EEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            88888888774 5666777778888888888877 66677777777777777773 346665554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.6e-23  Score=220.75  Aligned_cols=227  Identities=23%  Similarity=0.215  Sum_probs=177.8

Q ss_pred             EECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCc
Q 041976          576 LDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIK  655 (901)
Q Consensus       576 L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~  655 (901)
                      .+..+..+. .+|..+   +++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus        12 ~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           12 YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            344455554 456543   2478888888888887777778888888888888888887777778888888888888888


Q ss_pred             CccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccC-CcHHHHHhhHhhhcccccCCccccc
Q 041976          656 INDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGY-LPERFLENLNAMRNVSADEGKLRYL  734 (901)
Q Consensus       656 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~~l~~L~~l~l~~~~~~~l  734 (901)
                      +.+..+..+.++++|++|++++|.+.+..+..  +..+++|++|++++|.+.+. +|..+                    
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~l~~~~--------------------  145 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYF--------------------  145 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCC--CTTCTTCCEEECCSSCCCCCCCCGGG--------------------
T ss_pred             cCccChhhhcCCccccEEECCCCCccccCchh--cccCCCCCEEECcCCccceecCchhh--------------------
Confidence            88877777888888888888888877654433  36778888888888888753 35322                    


Q ss_pred             CccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCC----eEeCCCCcCCCCCCccccCCCCCC
Q 041976          735 GEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLR----LLNLSHNHFTGQIPSSLGNLAKLE  810 (901)
Q Consensus       735 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~L~~L~  810 (901)
                                           ..+++|++|++++|++++..+..+..+++|+    +|++++|.+++..+..+.. .+|+
T Consensus       146 ---------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~  203 (276)
T 2z62_A          146 ---------------------SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLK  203 (276)
T ss_dssp             ---------------------GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEE
T ss_pred             ---------------------ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-Cccc
Confidence                                 1157788999999999988888888888877    8999999999877766655 4899


Q ss_pred             EEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCCC
Q 041976          811 SLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHG  850 (901)
Q Consensus       811 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~  850 (901)
                      .|+|++|++++..+..|..+++|++|++++|++.+..|.-
T Consensus       204 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          204 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             EEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred             EEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence            9999999999888888899999999999999999877643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=5.9e-23  Score=215.41  Aligned_cols=214  Identities=25%  Similarity=0.294  Sum_probs=110.5

Q ss_pred             CCCcCccceeecCCCCeEEEEEcCCCCCCCCCCCCcccccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCC
Q 041976           66 TNCCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNIN  145 (901)
Q Consensus        66 ~~~c~w~gv~c~~~~~~v~~l~L~~~~~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~  145 (901)
                      .++|.|.|+.|.- .+.++.++++++.+.. +|.  .+.  +++++|++++|.++.. .+..+.++++|++|+|++|.++
T Consensus         2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~~-ip~--~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~   74 (270)
T 2o6q_A            2 EALCKKDGGVCSC-NNNKNSVDCSSKKLTA-IPS--NIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQ   74 (270)
T ss_dssp             CCCBGGGTCSBEE-ETTTTEEECTTSCCSS-CCS--CCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCS
T ss_pred             CccCCCCCCCCEe-CCCCCEEEccCCCCCc-cCC--CCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccC
Confidence            4789999999963 3456678888877774 443  222  5677777777777653 3345666777777777776665


Q ss_pred             CCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeec
Q 041976          146 CKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDV  225 (901)
Q Consensus       146 ~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~L  225 (901)
                      ...+..+..+              ++|++|++++|.+.+..+..+..+++|++|++++| .+++..+             
T Consensus        75 ~i~~~~~~~l--------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-------------  126 (270)
T 2o6q_A           75 TLPAGIFKEL--------------KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPP-------------  126 (270)
T ss_dssp             CCCTTTTSSC--------------TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCT-------------
T ss_pred             eeChhhhcCC--------------CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCC-ccCeeCH-------------
Confidence            3222233445              56666666666555444444444555555555444 3332222             


Q ss_pred             CCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccC
Q 041976          226 SETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEI  305 (901)
Q Consensus       226 s~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  305 (901)
                               ..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..
T Consensus       127 ---------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (270)
T 2o6q_A          127 ---------RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP  197 (270)
T ss_dssp             ---------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             ---------HHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence                     23344444444444444444333333444444444444444444333333444444444444444444333


Q ss_pred             CC-CCCCCCCCEEECCCCC
Q 041976          306 PD-IFNLTQVSFFDLSNNQ  323 (901)
Q Consensus       306 ~~-~~~l~~L~~L~l~~n~  323 (901)
                      +. +..+++|+.|++++|.
T Consensus       198 ~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          198 EGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSC
T ss_pred             HHHhccccCCCEEEecCCC
Confidence            22 3333344444444433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=5e-25  Score=250.85  Aligned_cols=236  Identities=20%  Similarity=0.201  Sum_probs=125.8

Q ss_pred             CCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEE
Q 041976          547 SSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLN  626 (901)
Q Consensus       547 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  626 (901)
                      ++|++|++++|.+++..|..+..+++|++|++++|.+++..|  +..+. +|++|++++|.+++..+     .++|++|+
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~-~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS-TLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCT-TCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCC-CCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            456666666666666666666666666666666666664443  44443 66666666666654322     25566666


Q ss_pred             ccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCcc
Q 041976          627 LNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNF  706 (901)
Q Consensus       627 Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l  706 (901)
                      +++|.+++..+..   +++|++|++++|.+++..|..++.+++|++|++++|.+.+..+.... ..+++|+.|++++|.+
T Consensus       106 L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          106 AANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             CCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCC
T ss_pred             CcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-hhCCcccEEecCCCcc
Confidence            6666666544432   34566666666666665555555556666666665555543332210 1344555555555554


Q ss_pred             ccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCC
Q 041976          707 SGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLR  786 (901)
Q Consensus       707 ~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~  786 (901)
                      ++..+..                                           .+++|++|+|++|.+++.+|. +..+++|+
T Consensus       182 ~~~~~~~-------------------------------------------~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~  217 (487)
T 3oja_A          182 YDVKGQV-------------------------------------------VFAKLKTLDLSSNKLAFMGPE-FQSAAGVT  217 (487)
T ss_dssp             CEEECCC-------------------------------------------CCTTCCEEECCSSCCCEECGG-GGGGTTCS
T ss_pred             ccccccc-------------------------------------------cCCCCCEEECCCCCCCCCCHh-HcCCCCcc
Confidence            4321100                                           034455555555555543332 55555555


Q ss_pred             eEeCCCCcCCCCCCccccCCCCCCEEeCCCCccC-CCCCcCCcCCCCCCeeeCC
Q 041976          787 LLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVA-GKIPKPLTSLTSLSVLNLS  839 (901)
Q Consensus       787 ~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls  839 (901)
                      .|+|++|.+++ +|..++.+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       218 ~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          218 WISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             EEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             EEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            55555555553 3444555555555555555555 3444444455555555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=7.1e-25  Score=249.64  Aligned_cols=223  Identities=22%  Similarity=0.220  Sum_probs=186.2

Q ss_pred             cCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccE
Q 041976          569 DIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEV  648 (901)
Q Consensus       569 ~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  648 (901)
                      .+++|++|++++|.+++..|..+..+. +|++|+|++|.+++..|  |..+++|++|+|++|.+++..+     .++|++
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~  103 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIET  103 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCE
Confidence            445899999999999977777887776 99999999999987765  8899999999999999986443     388999


Q ss_pred             EeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccC
Q 041976          649 LDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADE  728 (901)
Q Consensus       649 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~  728 (901)
                      |++++|.+.+..+.   .+++|++|++++|.+.+..+...  ..+++|+.|++++|.+++.+|..+..            
T Consensus       104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~------------  166 (487)
T 3oja_A          104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAA------------  166 (487)
T ss_dssp             EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGG------------
T ss_pred             EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhh------------
Confidence            99999999887664   46889999999999987766544  56889999999999998876654321            


Q ss_pred             CcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCC
Q 041976          729 GKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAK  808 (901)
Q Consensus       729 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~  808 (901)
                                                  .+++|++|+|++|.+++..+  +..+++|++|+|++|.+++.+| .|..+++
T Consensus       167 ----------------------------~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~  215 (487)
T 3oja_A          167 ----------------------------SSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAG  215 (487)
T ss_dssp             ----------------------------GTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTT
T ss_pred             ----------------------------hCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCC
Confidence                                        15778999999999997744  3469999999999999997655 5999999


Q ss_pred             CCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCc-cCCC
Q 041976          809 LESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLD-GPIP  848 (901)
Q Consensus       809 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-g~iP  848 (901)
                      |+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|
T Consensus       216 L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~  255 (487)
T 3oja_A          216 VTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR  255 (487)
T ss_dssp             CSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred             ccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence            9999999999996 6778999999999999999998 5554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.90  E-value=4.7e-25  Score=237.22  Aligned_cols=257  Identities=15%  Similarity=0.153  Sum_probs=125.2

Q ss_pred             CceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCcc
Q 041976          109 LQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPI  188 (901)
Q Consensus       109 L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~  188 (901)
                      ++..+++.+.+... +...+..+++|++|+|++|.+.+..|..++.+              ++|++|++++|.+++..+ 
T Consensus        12 l~i~~ls~~~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l--------------~~L~~L~Ls~n~l~~~~~-   75 (317)
T 3o53_A           12 YKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPF--------------TKLELLNLSSNVLYETLD-   75 (317)
T ss_dssp             EEEESCCTTTHHHH-HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTC--------------TTCCEEECTTSCCEEEEE-
T ss_pred             eeEeeccccchhhh-HHHHhccCCCCCEEECcCCccCcCCHHHhhCC--------------CcCCEEECCCCcCCcchh-
Confidence            44445555544332 22334455566666666666665545555555              666666666666654433 


Q ss_pred             ccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCC
Q 041976          189 NIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLT  268 (901)
Q Consensus       189 ~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~  268 (901)
                       +..+++|++|++++| .+++..    ..++|++|++++|.++.++..  .+++|++|++++|.+.+..+..+..+++|+
T Consensus        76 -~~~l~~L~~L~Ls~n-~l~~l~----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~  147 (317)
T 3o53_A           76 -LESLSTLRTLDLNNN-YVQELL----VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQ  147 (317)
T ss_dssp             -ETTCTTCCEEECCSS-EEEEEE----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEE
T ss_pred             -hhhcCCCCEEECcCC-cccccc----CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCC
Confidence             556666666666666 333221    124455555555544443321  234444444444444443344444444444


Q ss_pred             EEECCCCcCCCCCCccc-cCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCc
Q 041976          269 LLHLMHNNFSGHIPSSL-SNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNS  347 (901)
Q Consensus       269 ~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  347 (901)
                      +|++++|.+++..+..+ ..+++|++|++++|.+++. +...                        .+++|++|++++|.
T Consensus       148 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~------------------------~l~~L~~L~Ls~N~  202 (317)
T 3o53_A          148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQV------------------------VFAKLKTLDLSSNK  202 (317)
T ss_dssp             EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCC------------------------CCTTCCEEECCSSC
T ss_pred             EEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cccc------------------------ccccCCEEECCCCc
Confidence            44444444444333333 2344444444444444432 2222                        24445555555555


Q ss_pred             CcccCChhhcCCCCCcEEEccCCccccccCCC-CCCCCCEEEccCccCC-CCCchhhhcccccCceeccc
Q 041976          348 FSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF-PSKSLQNIYLSNNRLQ-GSIPSSIFELVNLTDLQLDS  415 (901)
Q Consensus       348 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~  415 (901)
                      +++. |..+..+++|++|++++|.+++..... .+++|+.|++++|.+. +.++.++..+++|+.+++++
T Consensus       203 l~~l-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          203 LAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             CCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCcc-hhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence            4432 222444455555555555444322211 3344555555555554 45566677777777777764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=1.1e-25  Score=265.58  Aligned_cols=407  Identities=15%  Similarity=0.129  Sum_probs=204.7

Q ss_pred             CCCCCCEEEccCccCCCCCchhhh-cccccCceecccC-cCCCccchhhhhhcCCCcEEEccCCccccccc---cccCCC
Q 041976          380 PSKSLQNIYLSNNRLQGSIPSSIF-ELVNLTDLQLDSN-NFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNT---FKIDSP  454 (901)
Q Consensus       380 ~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~~  454 (901)
                      .+++|++|++++|.+++..+..+. .+++|++|++++| .++....+....++++|++|++++|.+++...   ..+...
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            356777777777777666555665 6788888888887 44443223445578888888888888765432   223345


Q ss_pred             CCCccEEecCCcC--CC--CCChhhccCCCCCEEeCCCCcccccCChhhhhcCCCCccEEEcCCCccCCcccCCCCCCce
Q 041976          455 FPKFSYLSLSACN--IS--AFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGY  530 (901)
Q Consensus       455 ~~~L~~L~l~~~~--l~--~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~  530 (901)
                      +++|++|++++|.  +.  .++.....+++|++|++++|...+.++..+  ..+++|+.|+++.+..             
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~-------------  247 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL--QRAPQLEELGTGGYTA-------------  247 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH--HHCTTCSEEECSBCCC-------------
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH--hcCCcceEcccccccC-------------
Confidence            6788888888776  21  122234557888888888873322345544  4455666666544321             


Q ss_pred             eeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEE-ECCCCcCcccCCcchhcCCCCccEEECCCCccc
Q 041976          531 LDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVL-DLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLN  609 (901)
Q Consensus       531 L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~  609 (901)
                                            ++..+.+.+ ++..+.++++|+.| .+.+... +.++..+..+. +|++|++++|.++
T Consensus       248 ----------------------~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~-~L~~L~L~~~~l~  302 (594)
T 2p1m_B          248 ----------------------EVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCS-RLTTLNLSYATVQ  302 (594)
T ss_dssp             ----------------------CCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHT-TCCEEECTTCCCC
T ss_pred             ----------------------ccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhC-CCCEEEccCCCCC
Confidence                                  011122222 22244455555555 2222221 12232222332 5555555555543


Q ss_pred             ccC-CcCccCCCccCEEEccCCccccc-CCccccCCCcccEEeCC---------CCcCccCcccccc-CCCCCcEEEccC
Q 041976          610 GSI-PGTFAESNWLRSLNLNNNELGGA-IPQSLVNCTKVEVLDIG---------NIKINDAFPYWLG-NLPELQVLVLRS  677 (901)
Q Consensus       610 ~~~-~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~l~---------~n~l~~~~~~~l~-~l~~L~~L~L~~  677 (901)
                      +.. +..+..+++|++|++++| ++.. ++.....+++|++|++.         .+.+++.....+. .+++|++|.+..
T Consensus       303 ~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~  381 (594)
T 2p1m_B          303 SYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC  381 (594)
T ss_dssp             HHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred             HHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc
Confidence            221 111334455555555555 2211 11112235555555552         2233322222222 255555555555


Q ss_pred             CcCcccCCCCCCCCCCCCCcEEEcC--C----CccccCCcH----HHHHhhHhhhcccccCCcccccCccceeceeEEee
Q 041976          678 NKFHGSVREFEPKESFPKLRILDLS--I----NNFSGYLPE----RFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTL  747 (901)
Q Consensus       678 n~~~~~~~~~~~~~~l~~L~~L~Ls--~----n~l~~~~p~----~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~  747 (901)
                      |.+++...... ...+++|+.|+++  +    +.+++....    ..+..+++|+.+++++ .+...             
T Consensus       382 ~~l~~~~~~~l-~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~-------------  446 (594)
T 2p1m_B          382 RQMTNAALITI-ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK-------------  446 (594)
T ss_dssp             SCCCHHHHHHH-HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH-------------
T ss_pred             CCcCHHHHHHH-HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH-------------
Confidence            55433211111 0124555555555  2    233211101    1123334444444432 11000             


Q ss_pred             cchhHHHhhhccceeEEEccccccccccchhh-hccCCCCeEeCCCCcCCCCCCc-cccCCCCCCEEeCCCCccCCCCCc
Q 041976          748 KGTEIEMQKILTVFTTIDFSSNGFDGEISQVI-GKLHSLRLLNLSHNHFTGQIPS-SLGNLAKLESLDLSSNNVAGKIPK  825 (901)
Q Consensus       748 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~Ls~N~l~~~~p~-~l~~L~~L~~L~Ls~N~l~~~~p~  825 (901)
                        ....+...+++|+.|+|++|.+++..+..+ .++++|++|+|++|.+++..+. ....+++|+.|++++|+++....+
T Consensus       447 --~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  524 (594)
T 2p1m_B          447 --VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACK  524 (594)
T ss_dssp             --HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHH
T ss_pred             --HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHH
Confidence              000111225677788888888776555444 6678888888888877544333 334577788888888877543333


Q ss_pred             CC-cCCCCCCeeeCCCCcCc
Q 041976          826 PL-TSLTSLSVLNLSHNRLD  844 (901)
Q Consensus       826 ~l-~~l~~L~~L~Ls~N~l~  844 (901)
                      .+ ..++.|+...+..+.-.
T Consensus       525 ~l~~~lp~l~i~~~~~~~~~  544 (594)
T 2p1m_B          525 LLGQKMPKLNVEVIDERGAP  544 (594)
T ss_dssp             HHHHHCTTEEEEEECSSSCG
T ss_pred             HHHHhCCCCEEEEecCCCcc
Confidence            33 34566666666655443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=4e-26  Score=269.27  Aligned_cols=112  Identities=17%  Similarity=0.186  Sum_probs=65.3

Q ss_pred             cccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCc-cCCCccCEEEccCCcccccCCc-cccCCC
Q 041976          567 ICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTF-AESNWLRSLNLNNNELGGAIPQ-SLVNCT  644 (901)
Q Consensus       567 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~  644 (901)
                      +..+++|++|++++ .+++..+..+....++|+.|++++|.+++..+..+ ..+++|++|+|++|.+++.... ....++
T Consensus       428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~  506 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE  506 (594)
T ss_dssp             HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred             HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence            45566777777766 55544444444423367777777777655433333 4566777777777777543332 334467


Q ss_pred             cccEEeCCCCcCccCccccc-cCCCCCcEEEccCCc
Q 041976          645 KVEVLDIGNIKINDAFPYWL-GNLPELQVLVLRSNK  679 (901)
Q Consensus       645 ~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~n~  679 (901)
                      +|++|++++|+++......+ ..+|.|+...+..+.
T Consensus       507 ~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          507 TMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             GSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             CCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            77777777777644433333 345666665555543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=6.2e-22  Score=207.63  Aligned_cols=205  Identities=25%  Similarity=0.289  Sum_probs=151.1

Q ss_pred             CCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeC
Q 041976          572 ALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDI  651 (901)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  651 (901)
                      ..+.++++++.++ .+|..+.   +++++|++++|++++..+..|..+++|++|++++|+++...+..|..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            4567777777777 5665443   37778888888777666667777777778877777777666666677777777777


Q ss_pred             CCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcc
Q 041976          652 GNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKL  731 (901)
Q Consensus       652 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~  731 (901)
                      ++|++.+..+..+..+++|++|++++|.+.+..+...  ..                                       
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~---------------------------------------  131 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DS---------------------------------------  131 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT--TT---------------------------------------
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh--Cc---------------------------------------
Confidence            7777776666666666666666666665543322211  22                                       


Q ss_pred             cccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCE
Q 041976          732 RYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLES  811 (901)
Q Consensus       732 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~  811 (901)
                                                +++|++|++++|.+++..+..|+.+++|++|+|++|++++..+..|..+++|+.
T Consensus       132 --------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  185 (270)
T 2o6q_A          132 --------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT  185 (270)
T ss_dssp             --------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             --------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCE
Confidence                                      345566666666666655666788899999999999999888888999999999


Q ss_pred             EeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCC
Q 041976          812 LDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPI  847 (901)
Q Consensus       812 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i  847 (901)
                      |+|++|++++..+..|..+++|++|+|++|++...-
T Consensus       186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             EECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence            999999999888888999999999999999987643

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=3.9e-22  Score=210.14  Aligned_cols=209  Identities=21%  Similarity=0.233  Sum_probs=120.9

Q ss_pred             CCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCC
Q 041976          573 LDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIG  652 (901)
Q Consensus       573 L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  652 (901)
                      |++|++++|.+++..+..+..+. +|++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|+++
T Consensus        30 l~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           30 TKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             ccEEECCCCcccccCHhHhcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            44444444444433332333333 44444444444444444444445555555555555554444445555555555555


Q ss_pred             CCcCccCccccccCCCCCcEEEccCCcCccc-CCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcc
Q 041976          653 NIKINDAFPYWLGNLPELQVLVLRSNKFHGS-VREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKL  731 (901)
Q Consensus       653 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~  731 (901)
                      +|++.+..+..+..+++|++|++++|.+.+. ++..  +..+++|++|++++|++++..+.. +..+..+          
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~--~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L----------  175 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQM----------  175 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG--GGGCTTCCEEECCSSCCCEECGGG-GHHHHTC----------
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchh--hccCCCCCEEECCCCCCCcCCHHH-hhhhhhc----------
Confidence            5555544444455555555555555555431 1222  244566666666666666543322 2322222          


Q ss_pred             cccCccceeceeEEeecchhHHHhhhcccee-EEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCC
Q 041976          732 RYLGEEYYQDSVVVTLKGTEIEMQKILTVFT-TIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLE  810 (901)
Q Consensus       732 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~  810 (901)
                                                 +.+. +|++++|.+++..+..+.. .+|++|+|++|++++..+..|..+++|+
T Consensus       176 ---------------------------~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~  227 (276)
T 2z62_A          176 ---------------------------PLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQ  227 (276)
T ss_dssp             ---------------------------TTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCC
T ss_pred             ---------------------------cccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhccccccc
Confidence                                       2222 7899999998766665554 4899999999999988888889999999


Q ss_pred             EEeCCCCccCCCC
Q 041976          811 SLDLSSNNVAGKI  823 (901)
Q Consensus       811 ~L~Ls~N~l~~~~  823 (901)
                      .|+|++|++++..
T Consensus       228 ~L~l~~N~~~c~c  240 (276)
T 2z62_A          228 KIWLHTNPWDCSC  240 (276)
T ss_dssp             EEECCSSCBCCCT
T ss_pred             EEEccCCcccccC
Confidence            9999999998654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=1.3e-22  Score=217.62  Aligned_cols=230  Identities=22%  Similarity=0.225  Sum_probs=168.3

Q ss_pred             CCCEEECCCCcCcccCCc---chhcCCCCccEEECCCCcccccCCcCc--cCCCccCEEEccCCcccccCC----ccccC
Q 041976          572 ALDVLDLSNNRLNGTIPE---CIGNFSPSLSVLDLRNNRLNGSIPGTF--AESNWLRSLNLNNNELGGAIP----QSLVN  642 (901)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~---~~~~~~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~----~~l~~  642 (901)
                      .++.+.+.++.++.....   ...... +|++|++++|.+++..|..+  ..+++|++|++++|++++..+    ..+..
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYS-RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHS-CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccC-ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            355566666555421100   111222 68888888888887777777  778888888888888876544    33456


Q ss_pred             CCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCccc--CCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHh
Q 041976          643 CTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGS--VREFEPKESFPKLRILDLSINNFSGYLPERFLENLNA  720 (901)
Q Consensus       643 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~  720 (901)
                      +++|++|++++|++.+..+..+..+++|++|++++|++.+.  ++.......+++|++|++++|+++. ++....     
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~-----  217 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCA-----  217 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHH-----
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHH-----
Confidence            88888888888888888888888888888888888887642  2222223568899999999998863 222110     


Q ss_pred             hhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhcc---CCCCeEeCCCCcCCC
Q 041976          721 MRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKL---HSLRLLNLSHNHFTG  797 (901)
Q Consensus       721 L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l---~~L~~L~Ls~N~l~~  797 (901)
                                                      .....+++|++|||++|++++..|..+..+   ++|++|+|++|+++ 
T Consensus       218 --------------------------------~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-  264 (310)
T 4glp_A          218 --------------------------------ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-  264 (310)
T ss_dssp             --------------------------------HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-
T ss_pred             --------------------------------HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-
Confidence                                            001125778899999999998888777776   69999999999999 


Q ss_pred             CCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCcc
Q 041976          798 QIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDG  845 (901)
Q Consensus       798 ~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  845 (901)
                      .+|..+.  ++|++|||++|++++. |. +..+++|++|+|++|+++.
T Consensus       265 ~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          265 QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            5677665  7999999999999975 43 6788999999999999974

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=4.2e-22  Score=209.08  Aligned_cols=207  Identities=21%  Similarity=0.254  Sum_probs=146.1

Q ss_pred             CCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEEC
Q 041976          193 LPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHL  272 (901)
Q Consensus       193 l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L  272 (901)
                      +++|+.|++++| .+. .++.+..+++|++|++++|.+..+ ..++.+++|++|++++|.+.+..+..+.++++|++|++
T Consensus        40 l~~L~~L~l~~~-~i~-~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           40 LNSIDQIIANNS-DIK-SVQGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             HTTCCEEECTTS-CCC-CCTTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccceeeeeeCCC-Ccc-cccccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence            344444444444 222 223344445555555555555554 35777778888888888877666666777888888888


Q ss_pred             CCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCccc
Q 041976          273 MHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGT  351 (901)
Q Consensus       273 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  351 (901)
                      ++|.+++..+..++.+++|++|++++|.+++..+. +..+++|++|++++|++++..+..++.+++|++|++++|.+++.
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (272)
T 3rfs_A          117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV  196 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence            88888876666678888888888888888766665 56788888888888888876666778888888888888888877


Q ss_pred             CChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccc
Q 041976          352 IPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVN  407 (901)
Q Consensus       352 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  407 (901)
                      .+..+..+++|++|++++|.+.+.     ++.++.+++..|.++|.+|.+++.+..
T Consensus       197 ~~~~~~~l~~L~~L~l~~N~~~~~-----~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          197 PDGVFDRLTSLQYIWLHDNPWDCT-----CPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCC-----TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             CHHHHhCCcCCCEEEccCCCcccc-----CcHHHHHHHHHHhCCCcccCcccccCC
Confidence            777778888888888888876643     446777777777777777777665543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=5.4e-21  Score=202.06  Aligned_cols=176  Identities=20%  Similarity=0.183  Sum_probs=100.8

Q ss_pred             CCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECC
Q 041976          170 SSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLG  249 (901)
Q Consensus       170 ~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~  249 (901)
                      +.+++|++++|.+++..+..+..+++|++|++++| .+++..+ ...+++|++|++++|.++.+|..+..+++|++|+++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~  108 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS  108 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccC-CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECC
Confidence            45666666666666655666666677777777766 5543222 245556666666666666666666666666666666


Q ss_pred             CCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCC
Q 041976          250 YSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPI  328 (901)
Q Consensus       250 ~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~  328 (901)
                      +|++++..+..|.++++|++|++++|++++..+..|..+++|++|++++|++++..+. +..+++|++|++++|+++ .+
T Consensus       109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~i  187 (290)
T 1p9a_G          109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI  187 (290)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-cc
Confidence            6666655555566666666666666666655445555566666666666655544433 344555555555555554 34


Q ss_pred             CccccCCcCCcEEECcCCcC
Q 041976          329 PSHGSRLQNLVLIRLNNNSF  348 (901)
Q Consensus       329 ~~~~~~l~~L~~L~L~~n~l  348 (901)
                      |..+..+.+|+.+++++|.+
T Consensus       188 p~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          188 PKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CTTTTTTCCCSEEECCSCCB
T ss_pred             ChhhcccccCCeEEeCCCCc
Confidence            44444444444444444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=3.3e-23  Score=227.29  Aligned_cols=259  Identities=18%  Similarity=0.170  Sum_probs=177.9

Q ss_pred             EEccCCccccccccccccCCCCCEEECCCCcCcccCC----cchhcCCCCccEEECCCCcccccCCcCccCC-----Ccc
Q 041976          552 LLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIP----ECIGNFSPSLSVLDLRNNRLNGSIPGTFAES-----NWL  622 (901)
Q Consensus       552 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-----~~L  622 (901)
                      ++++.|.+++.+|..+...++|++|++++|.+++..+    ..+..++.+|++|++++|.+++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            5667777777777766666668888888888775444    4444443368888888888877666666554     778


Q ss_pred             CEEEccCCcccccCCccc----cCC-CcccEEeCCCCcCccCcccccc----C-CCCCcEEEccCCcCcccCCCCC--CC
Q 041976          623 RSLNLNNNELGGAIPQSL----VNC-TKVEVLDIGNIKINDAFPYWLG----N-LPELQVLVLRSNKFHGSVREFE--PK  690 (901)
Q Consensus       623 ~~L~Ls~N~l~~~~~~~l----~~l-~~L~~L~l~~n~l~~~~~~~l~----~-l~~L~~L~L~~n~~~~~~~~~~--~~  690 (901)
                      ++|+|++|++++..+..+    ..+ ++|++|++++|++++..+..+.    . .++|++|++++|.+.+......  .+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            888888888876665543    333 7888888888888776665433    3 2588888888888764221110  00


Q ss_pred             CCC-CCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEcccc
Q 041976          691 ESF-PKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSN  769 (901)
Q Consensus       691 ~~l-~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N  769 (901)
                      ..+ ++|++|++++|++++..+..+...+..                                    ..++|++|||++|
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~------------------------------------~~~~L~~L~Ls~N  206 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLAS------------------------------------IPASVTSLDLSAN  206 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHT------------------------------------SCTTCCEEECTTS
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHh------------------------------------CCCCCCEEECCCC
Confidence            123 378888888888877665443221111                                    0147888899999


Q ss_pred             ccccc----cchhhhc-cCCCCeEeCCCCcCCCCCC----ccccCCCCCCEEeCCCCccCCCCC-------cCCcCCCCC
Q 041976          770 GFDGE----ISQVIGK-LHSLRLLNLSHNHFTGQIP----SSLGNLAKLESLDLSSNNVAGKIP-------KPLTSLTSL  833 (901)
Q Consensus       770 ~l~~~----~~~~l~~-l~~L~~L~Ls~N~l~~~~p----~~l~~L~~L~~L~Ls~N~l~~~~p-------~~l~~l~~L  833 (901)
                      .+++.    ++..+.. .++|++|+|++|.+++..+    ..+..+++|+.|+|++|.+.+..+       +.+..+++|
T Consensus       207 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L  286 (362)
T 3goz_A          207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI  286 (362)
T ss_dssp             CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEE
T ss_pred             CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCce
Confidence            88863    5556666 3589999999999987655    345677889999999998665433       367788889


Q ss_pred             CeeeCCCCcCccC
Q 041976          834 SVLNLSHNRLDGP  846 (901)
Q Consensus       834 ~~L~Ls~N~l~g~  846 (901)
                      ++||+++|++.+.
T Consensus       287 ~~LdL~~N~l~~~  299 (362)
T 3goz_A          287 ILVDKNGKEIHPS  299 (362)
T ss_dssp             EEECTTSCBCCGG
T ss_pred             EEEecCCCcCCCc
Confidence            9999999998765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=1.7e-21  Score=204.42  Aligned_cols=209  Identities=21%  Similarity=0.171  Sum_probs=119.8

Q ss_pred             cccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcC
Q 041976          103 LFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCIL  182 (901)
Q Consensus       103 l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~  182 (901)
                      ...+++|++|+++++.+..  + ..++.+++|++|+|++|.+.+ + ..++.+              ++|++|++++|.+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~--~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l--------------~~L~~L~L~~n~l   97 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKS--V-QGIQYLPNVRYLALGGNKLHD-I-SALKEL--------------TNLTYLILTGNQL   97 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCC--C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTC--------------TTCCEEECTTSCC
T ss_pred             cccccceeeeeeCCCCccc--c-cccccCCCCcEEECCCCCCCC-c-hhhcCC--------------CCCCEEECCCCcc
Confidence            4455666666666665544  2 235556666666666665543 1 244444              5555555555555


Q ss_pred             CCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCcccc
Q 041976          183 QGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLG  262 (901)
Q Consensus       183 ~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~  262 (901)
                      ++..+..++++++|++|++++| .+++..+                      ..++.+++|++|++++|.+.+..+..+.
T Consensus        98 ~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~----------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~  154 (272)
T 3rfs_A           98 QSLPNGVFDKLTNLKELVLVEN-QLQSLPD----------------------GVFDKLTNLTYLNLAHNQLQSLPKGVFD  154 (272)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTS-CCCCCCT----------------------TTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CccChhHhcCCcCCCEEECCCC-cCCccCH----------------------HHhccCCCCCEEECCCCccCccCHHHhc
Confidence            5444444555555555555555 3333222                      2355666666666666666655555556


Q ss_pred             CCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEE
Q 041976          263 NLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLI  341 (901)
Q Consensus       263 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  341 (901)
                      .+++|++|++++|.+++..+..++.+++|++|++++|.+++..+. +..+++|++|++++|.+.+       .+++|+.+
T Consensus       155 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l  227 (272)
T 3rfs_A          155 KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYL  227 (272)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHH
T ss_pred             cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHH
Confidence            666666666666666655555566666666666666666665555 5566666666666666553       23456666


Q ss_pred             ECcCCcCcccCChhhcCCC
Q 041976          342 RLNNNSFSGTIPSWLFSLP  360 (901)
Q Consensus       342 ~L~~n~l~~~~~~~l~~l~  360 (901)
                      +++.|.++|.+|..++.++
T Consensus       228 ~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          228 SEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             HHHHHHTGGGBBCTTSCBC
T ss_pred             HHHHHhCCCcccCcccccC
Confidence            6666666666666655443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=1.5e-23  Score=228.02  Aligned_cols=210  Identities=19%  Similarity=0.165  Sum_probs=140.6

Q ss_pred             CCcCccceeecCCCCeEEEEEcCCCCCCCCCCCCcccccC--ccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcC
Q 041976           67 NCCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHL--LHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNI  144 (901)
Q Consensus        67 ~~c~w~gv~c~~~~~~v~~l~L~~~~~~g~~~~~~~l~~l--~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~  144 (901)
                      -|.+|.++.|+.  ..++.++++++.+.+   .  .+..+  +++++|++++|.+.+.  +..+.++++|++|+|++|.+
T Consensus        35 vc~~W~~~~~~~--~~~~~l~l~~~~~~~---~--~~~~~~~~~l~~L~l~~n~l~~~--~~~~~~~~~L~~L~L~~~~l  105 (336)
T 2ast_B           35 VCKRWYRLASDE--SLWQTLDLTGKNLHP---D--VTGRLLSQGVIAFRCPRSFMDQP--LAEHFSPFRVQHMDLSNSVI  105 (336)
T ss_dssp             SCHHHHHHHTCS--TTSSEEECTTCBCCH---H--HHHHHHHTTCSEEECTTCEECSC--CCSCCCCBCCCEEECTTCEE
T ss_pred             HHHHHHHHhcCc--hhheeeccccccCCH---H--HHHhhhhccceEEEcCCcccccc--chhhccCCCCCEEEccCCCc
Confidence            455899998863  457889999887762   2  56666  8999999999998875  33467899999999999998


Q ss_pred             CCC-CCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCcc-CCC-CCCCCCcc
Q 041976          145 NCK-IPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGK-FPA-NNWTSPIE  221 (901)
Q Consensus       145 ~~~-~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~-~~~-~~~~~~L~  221 (901)
                      .+. +|..+..+              ++|++|++++|.+++..+..++.+++|++|++++|..+++. ++. +..+++|+
T Consensus       106 ~~~~~~~~~~~~--------------~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~  171 (336)
T 2ast_B          106 EVSTLHGILSQC--------------SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  171 (336)
T ss_dssp             CHHHHHHHHTTB--------------CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CHHHHHHHHhhC--------------CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence            765 77777777              99999999999998888888999999999999998545542 332 23445555


Q ss_pred             eeecCCC-CCcc--CCccccCCC-CcCEEECCCC--CCc-cCCCccccCCCCCCEEECCCCc-CCCCCCccccCCCCCCE
Q 041976          222 YLDVSET-SFSE--LPDSIGNLK-LLGRLMLGYS--QFV-GPVPASLGNLTQLTLLHLMHNN-FSGHIPSSLSNLVQLTY  293 (901)
Q Consensus       222 ~L~Ls~~-~l~~--lp~~l~~l~-~L~~L~L~~n--~~~-~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~  293 (901)
                      +|++++| .++.  ++..+..++ +|++|++++|  .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++
T Consensus       172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~  251 (336)
T 2ast_B          172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  251 (336)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence            5555555 5542  344445555 5555555555  232 2333344445555555555554 44444444455555555


Q ss_pred             EEccCC
Q 041976          294 LDLSSN  299 (901)
Q Consensus       294 L~Ls~n  299 (901)
                      |++++|
T Consensus       252 L~l~~~  257 (336)
T 2ast_B          252 LSLSRC  257 (336)
T ss_dssp             EECTTC
T ss_pred             eeCCCC
Confidence            555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=4.9e-21  Score=198.35  Aligned_cols=89  Identities=21%  Similarity=0.295  Sum_probs=68.3

Q ss_pred             ceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCC
Q 041976          760 VFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLS  839 (901)
Q Consensus       760 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  839 (901)
                      +|++|+|++|++++..+..|+++++|++|+|++|++++..+..|+.+++|++|+|++|++++..+..+..+++|++|+++
T Consensus       108 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  187 (251)
T 3m19_A          108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF  187 (251)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence            34444444444444444556778888888888888888777788888899999999999988888888888999999999


Q ss_pred             CCcCccCCC
Q 041976          840 HNRLDGPIP  848 (901)
Q Consensus       840 ~N~l~g~iP  848 (901)
                      +|++.+..+
T Consensus       188 ~N~~~c~~~  196 (251)
T 3m19_A          188 GNQFDCSRC  196 (251)
T ss_dssp             SCCBCTTST
T ss_pred             CCceeCCcc
Confidence            999887644

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.85  E-value=4e-20  Score=195.37  Aligned_cols=204  Identities=21%  Similarity=0.187  Sum_probs=169.1

Q ss_pred             ccccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCc
Q 041976          102 SLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCI  181 (901)
Q Consensus       102 ~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~  181 (901)
                      .+.+++++++++++++.++.  +|..+.  +++++|+|++|.+.+..|..+..+              ++|++|++++|.
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~--ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l--------------~~L~~L~L~~n~   66 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPY--------------TRLTQLNLDRAE   66 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTC--------------TTCCEEECTTSC
T ss_pred             cccccCCccEEECCCCCCCc--CCCCCC--CCCCEEEcCCCcCCccCHHHhhcC--------------CCCCEEECCCCc
Confidence            46677888888888888876  666554  688888888888887667777777              888888888888


Q ss_pred             CCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCC-ccccCCCCcCEEECCCCCCccCCCcc
Q 041976          182 LQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELP-DSIGNLKLLGRLMLGYSQFVGPVPAS  260 (901)
Q Consensus       182 ~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~L~~n~~~~~~p~~  260 (901)
                      +++..+.  +.+++|++|++++| .+......+..+++|++|++++|.++.+| ..+..+++|++|++++|++.+..+..
T Consensus        67 l~~~~~~--~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~  143 (290)
T 1p9a_G           67 LTKLQVD--GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL  143 (290)
T ss_dssp             CCEEECC--SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             cCcccCC--CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhh
Confidence            8754332  77888999999988 76633334577888999999999999887 56899999999999999999877777


Q ss_pred             ccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCC
Q 041976          261 LGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAG  326 (901)
Q Consensus       261 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~  326 (901)
                      +..+++|++|++++|+++...+..|..+++|++|++++|+++...+.++..++|+.+++++|.+..
T Consensus       144 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence            889999999999999999766667889999999999999999666568888999999999998863

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=4.2e-22  Score=216.63  Aligned_cols=251  Identities=16%  Similarity=0.189  Sum_probs=170.0

Q ss_pred             CCcEEEccCCccccccccccccC--CCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCccccc-CCcCccCCCccCE
Q 041976          548 SLRVLLISNNQFTGEIIHSICDI--IALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGS-IPGTFAESNWLRS  624 (901)
Q Consensus       548 ~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  624 (901)
                      .++.++++++.+.   +..+..+  +.++.|++++|.+.+..+. +..+. +|++|++++|.+++. ++..+..+++|++
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~-~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCB-CCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCC-CCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            4566777777665   3444555  6777788887777755544 34444 777788877777654 5666777777777


Q ss_pred             EEccCCcccccCCccccCCCcccEEeCCCC-cCccC-ccccccCCCCCcEEEccCC-cCccc-CCCCCCCCCCC-CCcEE
Q 041976          625 LNLNNNELGGAIPQSLVNCTKVEVLDIGNI-KINDA-FPYWLGNLPELQVLVLRSN-KFHGS-VREFEPKESFP-KLRIL  699 (901)
Q Consensus       625 L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~L~~n-~~~~~-~~~~~~~~~l~-~L~~L  699 (901)
                      |++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..  ...++ +|++|
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~l~~~L~~L  200 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA--VAHVSETITQL  200 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH--HHHSCTTCCEE
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH--HHhcccCCCEE
Confidence            777777777666777777777777777777 56552 5555667777777777777 66532 1211  13456 77777


Q ss_pred             EcCCCc--cc-cCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccc-ccccc
Q 041976          700 DLSINN--FS-GYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNG-FDGEI  775 (901)
Q Consensus       700 ~Ls~n~--l~-~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~  775 (901)
                      ++++|.  ++ +.+|.                                         ....+++|++|++++|. +++..
T Consensus       201 ~l~~~~~~~~~~~l~~-----------------------------------------~~~~~~~L~~L~l~~~~~l~~~~  239 (336)
T 2ast_B          201 NLSGYRKNLQKSDLST-----------------------------------------LVRRCPNLVHLDLSDSVMLKNDC  239 (336)
T ss_dssp             ECCSCGGGSCHHHHHH-----------------------------------------HHHHCTTCSEEECTTCTTCCGGG
T ss_pred             EeCCCcccCCHHHHHH-----------------------------------------HHhhCCCCCEEeCCCCCcCCHHH
Confidence            777773  32 11111                                         11225788899999998 77777


Q ss_pred             chhhhccCCCCeEeCCCCc-CCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCC-CCCCeeeCCCCcCccCCCCC
Q 041976          776 SQVIGKLHSLRLLNLSHNH-FTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSL-TSLSVLNLSHNRLDGPIPHG  850 (901)
Q Consensus       776 ~~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~g~iP~~  850 (901)
                      +..+.++++|++|++++|. ++......++++++|+.|++++| ++   .+.+..+ ..+..|++++|++++..|..
T Consensus       240 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          240 FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCc
Confidence            8888999999999999995 33222236788999999999998 33   2344444 34778889999999887753

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=5.6e-21  Score=196.49  Aligned_cols=197  Identities=21%  Similarity=0.223  Sum_probs=126.1

Q ss_pred             CCccEEECCCCcccccCCcCccCCCccCEEEccCCc-ccccCCccccCCCcccEEeCCC-CcCccCccccccCCCCCcEE
Q 041976          596 PSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNE-LGGAIPQSLVNCTKVEVLDIGN-IKINDAFPYWLGNLPELQVL  673 (901)
Q Consensus       596 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L  673 (901)
                      ++|++|++++|+++++.+..|..+++|++|++++|+ ++++.+..|.++++|++|++++ |++++..+..|.++++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            378888888888887777778888888888888886 7766666788888888888887 78877777777788888888


Q ss_pred             EccCCcCcccCCCCCCCCCCCCCc---EEEcCCC-ccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecc
Q 041976          674 VLRSNKFHGSVREFEPKESFPKLR---ILDLSIN-NFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKG  749 (901)
Q Consensus       674 ~L~~n~~~~~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~  749 (901)
                      ++++|++.+ ++.   +..+++|+   +|++++| .+.+..+..+ .                                 
T Consensus       111 ~l~~n~l~~-lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~~~~-~---------------------------------  152 (239)
T 2xwt_C          111 GIFNTGLKM-FPD---LTKVYSTDIFFILEITDNPYMTSIPVNAF-Q---------------------------------  152 (239)
T ss_dssp             EEEEECCCS-CCC---CTTCCBCCSEEEEEEESCTTCCEECTTTT-T---------------------------------
T ss_pred             eCCCCCCcc-ccc---cccccccccccEEECCCCcchhhcCcccc-c---------------------------------
Confidence            888887765 333   24444554   6666666 5543222111 0                                 


Q ss_pred             hhHHHhhhcccee-EEEccccccccccchhhhccCCCCeEeCCCCc-CCCCCCccccCC-CCCCEEeCCCCccCCCCCcC
Q 041976          750 TEIEMQKILTVFT-TIDFSSNGFDGEISQVIGKLHSLRLLNLSHNH-FTGQIPSSLGNL-AKLESLDLSSNNVAGKIPKP  826 (901)
Q Consensus       750 ~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~L-~~L~~L~Ls~N~l~~~~p~~  826 (901)
                             .+++|+ +|++++|+++...+..+.. ++|++|+|++|+ +++..+..|..+ ++|+.||+++|++++..+. 
T Consensus       153 -------~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-  223 (239)
T 2xwt_C          153 -------GLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-  223 (239)
T ss_dssp             -------TTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT-
T ss_pred             -------chhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh-
Confidence                   134555 6666666666333333333 566666666663 665555566666 6666666666666643332 


Q ss_pred             CcCCCCCCeeeCCCC
Q 041976          827 LTSLTSLSVLNLSHN  841 (901)
Q Consensus       827 l~~l~~L~~L~Ls~N  841 (901)
                        .+++|+.|+++++
T Consensus       224 --~~~~L~~L~l~~~  236 (239)
T 2xwt_C          224 --GLEHLKELIARNT  236 (239)
T ss_dssp             --TCTTCSEEECTTC
T ss_pred             --HhccCceeeccCc
Confidence              3455666666554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=2.8e-22  Score=219.94  Aligned_cols=259  Identities=17%  Similarity=0.166  Sum_probs=184.1

Q ss_pred             eccCccccCCCCC---CCCCCcEEEccCCccccccc----cccccCC-CCCEEECCCCcCcccCCcchhcC----CCCcc
Q 041976          532 DLRSNLLQGPLPV---PPSSLRVLLISNNQFTGEII----HSICDII-ALDVLDLSNNRLNGTIPECIGNF----SPSLS  599 (901)
Q Consensus       532 ~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~~----~~~L~  599 (901)
                      +++.|.+.+.+|.   .+.+|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+...    .++|+
T Consensus         4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~   83 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT   83 (362)
T ss_dssp             ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred             ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence            4455555554332   24568888888888887776    6677788 89999999999987666666554    24899


Q ss_pred             EEECCCCcccccCCcCc----cCC-CccCEEEccCCcccccCCcccc----C-CCcccEEeCCCCcCccCcc----cccc
Q 041976          600 VLDLRNNRLNGSIPGTF----AES-NWLRSLNLNNNELGGAIPQSLV----N-CTKVEVLDIGNIKINDAFP----YWLG  665 (901)
Q Consensus       600 ~L~L~~n~l~~~~~~~~----~~l-~~L~~L~Ls~N~l~~~~~~~l~----~-l~~L~~L~l~~n~l~~~~~----~~l~  665 (901)
                      +|++++|.+++..+..+    ..+ ++|++|++++|++++..+..+.    . .++|++|++++|++.+..+    ..+.
T Consensus        84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~  163 (362)
T 3goz_A           84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA  163 (362)
T ss_dssp             EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred             EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence            99999999987666543    344 7899999999999876665543    3 4689999999999986443    3445


Q ss_pred             CCC-CCcEEEccCCcCcccCCCCC--CCCCC-CCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceec
Q 041976          666 NLP-ELQVLVLRSNKFHGSVREFE--PKESF-PKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQD  741 (901)
Q Consensus       666 ~l~-~L~~L~L~~n~~~~~~~~~~--~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~  741 (901)
                      .++ +|++|++++|++.+..+...  .+..+ ++|++|++++|.+++.....+...+.                      
T Consensus       164 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~----------------------  221 (362)
T 3goz_A          164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS----------------------  221 (362)
T ss_dssp             TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH----------------------
T ss_pred             cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh----------------------
Confidence            565 89999999999875443211  11233 58999999999987643332221111                      


Q ss_pred             eeEEeecchhHHHhhhccceeEEEccccccccccc----hhhhccCCCCeEeCCCCcCCCCCC-------ccccCCCCCC
Q 041976          742 SVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEIS----QVIGKLHSLRLLNLSHNHFTGQIP-------SSLGNLAKLE  810 (901)
Q Consensus       742 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~l~~l~~L~~L~Ls~N~l~~~~p-------~~l~~L~~L~  810 (901)
                                    ...++|++|||++|.+++..+    ..+..+++|++|+|++|.+.+..+       ..+.++++|+
T Consensus       222 --------------~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~  287 (362)
T 3goz_A          222 --------------SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII  287 (362)
T ss_dssp             --------------HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEE
T ss_pred             --------------cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceE
Confidence                          113578899999999987655    334667899999999999665443       4677889999


Q ss_pred             EEeCCCCccCCCCCcC
Q 041976          811 SLDLSSNNVAGKIPKP  826 (901)
Q Consensus       811 ~L~Ls~N~l~~~~p~~  826 (901)
                      .||+++|++....+..
T Consensus       288 ~LdL~~N~l~~~~~~~  303 (362)
T 3goz_A          288 LVDKNGKEIHPSHSIP  303 (362)
T ss_dssp             EECTTSCBCCGGGCHH
T ss_pred             EEecCCCcCCCcchHH
Confidence            9999999998764433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=7.3e-23  Score=227.02  Aligned_cols=249  Identities=17%  Similarity=0.248  Sum_probs=167.4

Q ss_pred             cccccccCCCCCEEECCCCcCcccCCc----chhcCCCCccEEECCCCc---ccccCCcCc-------cCCCccCEEEcc
Q 041976          563 IIHSICDIIALDVLDLSNNRLNGTIPE----CIGNFSPSLSVLDLRNNR---LNGSIPGTF-------AESNWLRSLNLN  628 (901)
Q Consensus       563 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~----~~~~~~~~L~~L~L~~n~---l~~~~~~~~-------~~l~~L~~L~Ls  628 (901)
                      ++..+..++.|++|++++|.+++..+.    .+..+. +|++|+|++|.   +++.+|..+       ..+++|++|+|+
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCC-CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            444556667777777777777654332    233444 77777777753   333444333       567778888888


Q ss_pred             CCcccc----cCCccccCCCcccEEeCCCCcCccCcccccc----CC---------CCCcEEEccCCcCcc-cCCCC-CC
Q 041976          629 NNELGG----AIPQSLVNCTKVEVLDIGNIKINDAFPYWLG----NL---------PELQVLVLRSNKFHG-SVREF-EP  689 (901)
Q Consensus       629 ~N~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~----~l---------~~L~~L~L~~n~~~~-~~~~~-~~  689 (901)
                      +|.++.    .+|..+..+++|++|++++|.+++..+..+.    .+         ++|++|++++|++.. .++.. ..
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            887776    3566677777888888888877654443333    23         777777777777652 22210 01


Q ss_pred             CCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEcccc
Q 041976          690 KESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSN  769 (901)
Q Consensus       690 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N  769 (901)
                      +..+++|++|++++|.++..   ....-.+                                 .....+++|++|+|++|
T Consensus       183 l~~~~~L~~L~L~~n~l~~~---g~~~l~~---------------------------------~~l~~~~~L~~L~Ls~n  226 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPE---GIEHLLL---------------------------------EGLAYCQELKVLDLQDN  226 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHH---HHHHHHH---------------------------------TTGGGCTTCCEEECCSS
T ss_pred             HHhCCCcCEEECcCCCCCHh---HHHHHHH---------------------------------HHhhcCCCccEEECcCC
Confidence            23456777777777766521   0000000                                 00112578899999999


Q ss_pred             ccc----cccchhhhccCCCCeEeCCCCcCCCC----CCcccc--CCCCCCEEeCCCCccCC----CCCcCC-cCCCCCC
Q 041976          770 GFD----GEISQVIGKLHSLRLLNLSHNHFTGQ----IPSSLG--NLAKLESLDLSSNNVAG----KIPKPL-TSLTSLS  834 (901)
Q Consensus       770 ~l~----~~~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~--~L~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~  834 (901)
                      .++    +.+|..+..+++|++|+|++|.+++.    +|..+.  .+++|+.|+|++|.+++    .+|..+ .++++|+
T Consensus       227 ~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~  306 (386)
T 2ca6_A          227 TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL  306 (386)
T ss_dssp             CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred             CCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence            996    67888899999999999999999876    566664  48999999999999998    477777 6689999


Q ss_pred             eeeCCCCcCccCCC
Q 041976          835 VLNLSHNRLDGPIP  848 (901)
Q Consensus       835 ~L~Ls~N~l~g~iP  848 (901)
                      +|++++|++++..|
T Consensus       307 ~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          307 FLELNGNRFSEEDD  320 (386)
T ss_dssp             EEECTTSBSCTTSH
T ss_pred             EEEccCCcCCcchh
Confidence            99999999997654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=1e-20  Score=202.73  Aligned_cols=223  Identities=17%  Similarity=0.164  Sum_probs=136.6

Q ss_pred             cCceEeCCCCCCCCCcCCcc--ccCCCCCceeeCCCCcCCCCCCccc--ccccccccchhhcccCCCCccEEEcCCCcCC
Q 041976          108 HLQTLNLSHNDFDYSEISSG--FSRFRNLTHFSLSDSNINCKIPYEI--SFLKMSTVVLDSLKNLSSSLTSLSLSDCILQ  183 (901)
Q Consensus       108 ~L~~L~Ls~n~~~~~~~~~~--l~~l~~L~~L~Ls~~~~~~~~p~~l--~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~  183 (901)
                      .++.+++.++.++...+...  +..+++|++|+|++|.+.+..|..+  +.+              ++|++|++++|.+.
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~--------------~~L~~L~Ls~n~i~  130 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATG--------------LALSSLRLRNVSWA  130 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCC--------------BCCSSCEEESCCCS
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccC--------------CCCCEEEeeccccc
Confidence            45566666655543211111  1223556666666666666666665  555              66666666666666


Q ss_pred             CCCc----cccCCCCCCCEEeCCCCCCCCccCC-CCCCCCCcceeecCCCCCcc---CC--ccccCCCCcCEEECCCCCC
Q 041976          184 GNFP----INIFHLPNPQMIRLSQNPSLAGKFP-ANNWTSPIEYLDVSETSFSE---LP--DSIGNLKLLGRLMLGYSQF  253 (901)
Q Consensus       184 ~~~p----~~l~~l~~L~~L~L~~n~~l~~~~~-~~~~~~~L~~L~Ls~~~l~~---lp--~~l~~l~~L~~L~L~~n~~  253 (901)
                      +..+    ..+..+++|++|++++| .+.+..+ .+..+++|++|++++|.+..   ++  ..++.+++|++|++++|++
T Consensus       131 ~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  209 (310)
T 4glp_A          131 TGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM  209 (310)
T ss_dssp             STTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC
T ss_pred             chhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC
Confidence            5444    23445666666766666 5554443 34566667777777666542   22  2335677777777777776


Q ss_pred             ccCCCc----cccCCCCCCEEECCCCcCCCCCCccccCC---CCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCC
Q 041976          254 VGPVPA----SLGNLTQLTLLHLMHNNFSGHIPSSLSNL---VQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAG  326 (901)
Q Consensus       254 ~~~~p~----~l~~l~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~  326 (901)
                      +. ++.    .+..+++|++|++++|.+++..|..+..+   ++|++|++++|+++.....+.  ++|++|++++|++++
T Consensus       210 ~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          210 ET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             CC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCS
T ss_pred             Cc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCC
Confidence            52 222    23566777777777777776666666665   577777777777774332243  677778888887775


Q ss_pred             CCCccccCCcCCcEEECcCCcCcc
Q 041976          327 PIPSHGSRLQNLVLIRLNNNSFSG  350 (901)
Q Consensus       327 ~~~~~~~~l~~L~~L~L~~n~l~~  350 (901)
                      . |. +..+++|++|++++|.++.
T Consensus       287 ~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          287 A-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             C-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             C-ch-hhhCCCccEEECcCCCCCC
Confidence            3 33 5667788888888887753

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=5.4e-20  Score=189.09  Aligned_cols=200  Identities=17%  Similarity=0.173  Sum_probs=114.6

Q ss_pred             CCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEE
Q 041976          546 PSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSL  625 (901)
Q Consensus       546 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  625 (901)
                      +.++++|++++|++++..+..+.++++|++|++++|.                        .++++.+..|..+++|++|
T Consensus        30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~------------------------~l~~i~~~~f~~l~~L~~L   85 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV------------------------TLQQLESHSFYNLSKVTHI   85 (239)
T ss_dssp             CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCS------------------------SCCEECTTTEESCTTCCEE
T ss_pred             CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCC------------------------CcceeCHhHcCCCcCCcEE
Confidence            3445555555555554444445555555555555554                        1443333444444455555


Q ss_pred             EccC-CcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCc---EEEccCC-cCcccCCCCCCCCCCCCCc-EE
Q 041976          626 NLNN-NELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQ---VLVLRSN-KFHGSVREFEPKESFPKLR-IL  699 (901)
Q Consensus       626 ~Ls~-N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~---~L~L~~n-~~~~~~~~~~~~~~l~~L~-~L  699 (901)
                      ++++ |++++..+..|.++++|++|++++|++++ +|. +..+++|+   +|++++| .+.+..+..  +..+++|+ +|
T Consensus        86 ~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~--~~~l~~L~~~L  161 (239)
T 2xwt_C           86 EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNA--FQGLCNETLTL  161 (239)
T ss_dssp             EEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTT--TTTTBSSEEEE
T ss_pred             ECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCccc--ccchhcceeEE
Confidence            5544 44444444444455555555555555444 222 44444444   5555555 444332222  24455666 66


Q ss_pred             EcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccc-cccccchh
Q 041976          700 DLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNG-FDGEISQV  778 (901)
Q Consensus       700 ~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~  778 (901)
                      ++++|.++ .+|...+.                                         .++|+.|++++|+ +++..+..
T Consensus       162 ~l~~n~l~-~i~~~~~~-----------------------------------------~~~L~~L~L~~n~~l~~i~~~~  199 (239)
T 2xwt_C          162 KLYNNGFT-SVQGYAFN-----------------------------------------GTKLDAVYLNKNKYLTVIDKDA  199 (239)
T ss_dssp             ECCSCCCC-EECTTTTT-----------------------------------------TCEEEEEECTTCTTCCEECTTT
T ss_pred             EcCCCCCc-ccCHhhcC-----------------------------------------CCCCCEEEcCCCCCcccCCHHH
Confidence            66666655 33322110                                         2467888999994 88777788


Q ss_pred             hhcc-CCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCc
Q 041976          779 IGKL-HSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNN  818 (901)
Q Consensus       779 l~~l-~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~  818 (901)
                      |.++ ++|++|++++|++++..+.   .+++|+.|+++++.
T Consensus       200 ~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          200 FGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             TTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             hhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence            9999 9999999999999965544   56789999998874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=3.2e-22  Score=221.87  Aligned_cols=139  Identities=17%  Similarity=0.172  Sum_probs=67.4

Q ss_pred             ccccCCCCcCEEECCCCCCccCCCccc----cCC---------CCCCEEECCCCcCC-CCCC---ccccCCCCCCEEEcc
Q 041976          235 DSIGNLKLLGRLMLGYSQFVGPVPASL----GNL---------TQLTLLHLMHNNFS-GHIP---SSLSNLVQLTYLDLS  297 (901)
Q Consensus       235 ~~l~~l~~L~~L~L~~n~~~~~~p~~l----~~l---------~~L~~L~L~~n~l~-~~~p---~~l~~l~~L~~L~Ls  297 (901)
                      ..+..+++|++|++++|.+.+..+..+    ..+         ++|++|++++|.++ +.++   ..+..+++|++|+++
T Consensus       116 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~  195 (386)
T 2ca6_A          116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMV  195 (386)
T ss_dssp             HHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECC
T ss_pred             HHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECc
Confidence            444555555555555555543222222    222         55666666666554 2222   234455566666666


Q ss_pred             CCcCcc-----cCC-CCCCCCCCCEEECCCCCCC----CCCCccccCCcCCcEEECcCCcCccc----CChhhc--CCCC
Q 041976          298 SNSFFG-----EIP-DIFNLTQVSFFDLSNNQLA----GPIPSHGSRLQNLVLIRLNNNSFSGT----IPSWLF--SLPL  361 (901)
Q Consensus       298 ~n~l~~-----~~~-~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~--~l~~  361 (901)
                      +|.+..     ..+ .+..+++|++|++++|.++    +.+|..+..+++|++|++++|.+++.    ++..+.  .+++
T Consensus       196 ~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~  275 (386)
T 2ca6_A          196 QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG  275 (386)
T ss_dssp             SSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCC
T ss_pred             CCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCC
Confidence            665541     222 2445555555555555553    33444555555555555555555433    233332  2444


Q ss_pred             CcEEEccCCccc
Q 041976          362 LEYVRLSDNQLS  373 (901)
Q Consensus       362 L~~L~L~~n~l~  373 (901)
                      |++|++++|.++
T Consensus       276 L~~L~L~~n~i~  287 (386)
T 2ca6_A          276 LQTLRLQYNEIE  287 (386)
T ss_dssp             CCEEECCSSCCB
T ss_pred             eEEEECcCCcCC
Confidence            555555444444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.82  E-value=3.5e-19  Score=184.39  Aligned_cols=178  Identities=20%  Similarity=0.210  Sum_probs=150.1

Q ss_pred             ceeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcc
Q 041976          529 GYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRL  608 (901)
Q Consensus       529 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l  608 (901)
                      ++++++++.+.......++.+++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+. +|++|++++|++
T Consensus        17 ~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l   95 (251)
T 3m19_A           17 KEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-ELGTLGLANNQL   95 (251)
T ss_dssp             TEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCC
T ss_pred             eEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-cCCEEECCCCcc
Confidence            3444444444444444456788888888888888888899999999999999999977777777776 999999999999


Q ss_pred             cccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCC
Q 041976          609 NGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFE  688 (901)
Q Consensus       609 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~  688 (901)
                      ++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++.+..+..+..+++|++|+|++|++.+..+...
T Consensus        96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  175 (251)
T 3m19_A           96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF  175 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHH
Confidence            98888889999999999999999998888888999999999999999998888889999999999999999987655443


Q ss_pred             CCCCCCCCcEEEcCCCccccC
Q 041976          689 PKESFPKLRILDLSINNFSGY  709 (901)
Q Consensus       689 ~~~~l~~L~~L~Ls~n~l~~~  709 (901)
                        ..+++|+.|++++|++.+.
T Consensus       176 --~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          176 --DRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             --TTCTTCCEEECCSCCBCTT
T ss_pred             --hCCCCCCEEEeeCCceeCC
Confidence              6789999999999999876

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=8.1e-20  Score=195.10  Aligned_cols=107  Identities=26%  Similarity=0.392  Sum_probs=51.3

Q ss_pred             ccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcE
Q 041976          261 LGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVL  340 (901)
Q Consensus       261 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  340 (901)
                      +..+++|++|++++|.+++..+  ++.+++|++|++++|.+++..+ +..+++|++|++++|.+++..+  +..+++|++
T Consensus       125 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~  199 (308)
T 1h6u_A          125 LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIE  199 (308)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCE
T ss_pred             hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCE
Confidence            3344444444444444432211  4444444444444444443222 4444455555555555443222  455555555


Q ss_pred             EECcCCcCcccCChhhcCCCCCcEEEccCCcccc
Q 041976          341 IRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSG  374 (901)
Q Consensus       341 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  374 (901)
                      |++++|.+++..  .+..+++|+.|++++|.+++
T Consensus       200 L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          200 VHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             EECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             EEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            555555555433  25556666666666666543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=2.1e-19  Score=191.85  Aligned_cols=173  Identities=25%  Similarity=0.336  Sum_probs=80.3

Q ss_pred             ccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCE
Q 041976          237 IGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSF  316 (901)
Q Consensus       237 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~  316 (901)
                      +..+++|++|++++|.+.+.. . +..+++|++|++++|.+++. + .+..+++|++|++++|.+++. +.+..+++|++
T Consensus        59 ~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~  133 (308)
T 1h6u_A           59 VQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQV  133 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCCC-GGGTTCTTCCE
T ss_pred             hhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCCc-hhhcCCCCCCE
Confidence            444444555555444444322 1 44444555555555444422 1 344444555555555544432 22444444444


Q ss_pred             EECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCC
Q 041976          317 FDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQG  396 (901)
Q Consensus       317 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~  396 (901)
                      |++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+                      ++
T Consensus       134 L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l----------------------~~  187 (308)
T 1h6u_A          134 LYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI----------------------SD  187 (308)
T ss_dssp             EECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC----------------------CC
T ss_pred             EECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc----------------------Cc
Confidence            4444444443221  4444445555555544443221  44444444444444433                      32


Q ss_pred             CCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccCCcccc
Q 041976          397 SIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSL  445 (901)
Q Consensus       397 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~  445 (901)
                      ..+  +..+++|++|++++|++++..   .+..+++|++|++++|+++.
T Consensus       188 ~~~--l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          188 ISP--LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CGG--GGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEEEEEC
T ss_pred             Chh--hcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCCeeec
Confidence            211  455555555666655555542   25556666666666666553

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=8.4e-20  Score=209.00  Aligned_cols=210  Identities=19%  Similarity=0.240  Sum_probs=128.0

Q ss_pred             cCCCCCCCCCCc-----Cccce-eecCCCCeEEEEEcCCCCCCCCCCCCcccccCccCceEeCCCCCCCCCcCCccccCC
Q 041976           58 KMISWKKDTNCC-----SWDGV-TCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRF  131 (901)
Q Consensus        58 ~l~~w~~~~~~c-----~w~gv-~c~~~~~~v~~l~L~~~~~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l  131 (901)
                      .+.+|..+.++|     .|.|+ .|..  ++++.|+|+++.+.+ +|.  .+  +++|++|+|++|.++.  +|   ..+
T Consensus        32 ~l~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~--~l--~~~L~~L~Ls~N~l~~--ip---~~l   99 (571)
T 3cvr_A           32 AWDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPD--NL--PPQITVLEITQNALIS--LP---ELP   99 (571)
T ss_dssp             HHHHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCS--CC--CTTCSEEECCSSCCSC--CC---CCC
T ss_pred             HHHHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCH--hH--cCCCCEEECcCCCCcc--cc---ccc
Confidence            356676666677     69999 7862  478889998888876 555  33  3778888888888774  56   456


Q ss_pred             CCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccC
Q 041976          132 RNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKF  211 (901)
Q Consensus       132 ~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~  211 (901)
                      ++|++|+|++|.+++ +|. +.                .+|++|++++|.+++ +|.   .+++|++|++++| .+++ +
T Consensus       100 ~~L~~L~Ls~N~l~~-ip~-l~----------------~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N-~l~~-l  155 (571)
T 3cvr_A          100 ASLEYLDACDNRLST-LPE-LP----------------ASLKHLDVDNNQLTM-LPE---LPALLEYINADNN-QLTM-L  155 (571)
T ss_dssp             TTCCEEECCSSCCSC-CCC-CC----------------TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS-CCSC-C
T ss_pred             CCCCEEEccCCCCCC-cch-hh----------------cCCCEEECCCCcCCC-CCC---cCccccEEeCCCC-ccCc-C
Confidence            777777777777765 555 22                366677777776665 444   4556666666666 4443 3


Q ss_pred             CCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCC
Q 041976          212 PANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQL  291 (901)
Q Consensus       212 ~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  291 (901)
                      |                      .   .+++|++|++++|.+++ +|. +.  ++|++|++++|.++ .+|. +..  +|
T Consensus       156 p----------------------~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L  202 (571)
T 3cvr_A          156 P----------------------E---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RN  202 (571)
T ss_dssp             C----------------------C---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC-----
T ss_pred             C----------------------C---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hh
Confidence            3                      3   33455555555555543 343 33  55555555555555 3343 332  44


Q ss_pred             -------CEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCc
Q 041976          292 -------TYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQ  336 (901)
Q Consensus       292 -------~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  336 (901)
                             ++|++++|.++...+.++.+++|+.|++++|.+++.+|..+..+.
T Consensus       203 ~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          203 HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             -----CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence                   666666666664333355666777777777777666666655443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=1.1e-18  Score=190.08  Aligned_cols=239  Identities=17%  Similarity=0.137  Sum_probs=124.1

Q ss_pred             eeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcc-hhcCCCCcc-EEECCCCcc
Q 041976          531 LDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPEC-IGNFSPSLS-VLDLRNNRL  608 (901)
Q Consensus       531 L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~~~~~L~-~L~L~~n~l  608 (901)
                      ++++++.++......++++++|++++|+|+...+..|.++++|++|+|++|.+.+.+|.. +.++. ++. .+.+++|++
T Consensus        14 v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~-~l~~~l~~~~N~l   92 (350)
T 4ay9_X           14 FLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP-KLHEIRIEKANNL   92 (350)
T ss_dssp             EEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCT-TCCEEEEEEETTC
T ss_pred             EEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcch-hhhhhhcccCCcc
Confidence            334444443322223455666666666666555555666666666666666665445433 23333 333 344455556


Q ss_pred             cccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCC-CcCccCccccccCCCCCcEEEccCCcCcccCCCC
Q 041976          609 NGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGN-IKINDAFPYWLGNLPELQVLVLRSNKFHGSVREF  687 (901)
Q Consensus       609 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~  687 (901)
                      +.+.|..|..+++|++|++++|+++...+..+....++..+++.+ +++....+..|..+.                   
T Consensus        93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~-------------------  153 (350)
T 4ay9_X           93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS-------------------  153 (350)
T ss_dssp             CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB-------------------
T ss_pred             cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc-------------------
Confidence            555555566666666666666665554444444444455555533 333333333333322                   


Q ss_pred             CCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEcc
Q 041976          688 EPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFS  767 (901)
Q Consensus       688 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls  767 (901)
                            ..++.|++++|+++. +|...+.                                         ...+++++++
T Consensus       154 ------~~l~~L~L~~N~i~~-i~~~~f~-----------------------------------------~~~L~~l~l~  185 (350)
T 4ay9_X          154 ------FESVILWLNKNGIQE-IHNSAFN-----------------------------------------GTQLDELNLS  185 (350)
T ss_dssp             ------SSCEEEECCSSCCCE-ECTTSST-----------------------------------------TEEEEEEECT
T ss_pred             ------hhhhhhccccccccC-CChhhcc-----------------------------------------ccchhHHhhc
Confidence                  235555555555542 2211100                                         2345666665


Q ss_pred             c-cccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCC
Q 041976          768 S-NGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHN  841 (901)
Q Consensus       768 ~-N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  841 (901)
                      + |.++...+..|+++++|++|||++|+|+.+.+..|.   +|+.|.+.++.-...+| .+..+++|+.++++++
T Consensus       186 ~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          186 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             TCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             cCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            4 444443344567777777777777777755444443   34444444444334555 3666777777777653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.78  E-value=1e-18  Score=190.46  Aligned_cols=237  Identities=16%  Similarity=0.110  Sum_probs=172.3

Q ss_pred             CEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCC-ccccCCCcccE-EeC
Q 041976          574 DVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIP-QSLVNCTKVEV-LDI  651 (901)
Q Consensus       574 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~-L~l  651 (901)
                      ++++.++++++ .+|..+   ++++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| ..|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            56777888887 777655   3489999999999997777789999999999999999876554 56888888775 566


Q ss_pred             CCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcc
Q 041976          652 GNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKL  731 (901)
Q Consensus       652 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~  731 (901)
                      +.|++....|..|..+++|++|++++|++....+...  ....++..+++.++.-...+|...+.               
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~l~~l~l~~~~~i~~l~~~~f~---------------  150 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK--IHSLQKVLLDIQDNINIHTIERNSFV---------------  150 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT--CCBSSCEEEEEESCTTCCEECTTSST---------------
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhh--cccchhhhhhhccccccccccccchh---------------
Confidence            6789998888999999999999999999875543322  44566778888664322233321110               


Q ss_pred             cccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCC-CcCCCCCCccccCCCCCC
Q 041976          732 RYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSH-NHFTGQIPSSLGNLAKLE  810 (901)
Q Consensus       732 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~L~~L~  810 (901)
                                              .....++.|++++|+|+...+..| ...+|++|++++ |.++.+.+..|+++++|+
T Consensus       151 ------------------------~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~  205 (350)
T 4ay9_X          151 ------------------------GLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPV  205 (350)
T ss_dssp             ------------------------TSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCS
T ss_pred             ------------------------hcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccc
Confidence                                    012457899999999996555544 456899999985 667766667899999999


Q ss_pred             EEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCCCCCCCCcccc
Q 041976          811 SLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQED  859 (901)
Q Consensus       811 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~  859 (901)
                      +|||++|+|+...+..|.+++   .|.+.++.--..+|.-..+..+...
T Consensus       206 ~LdLs~N~l~~lp~~~~~~L~---~L~~l~~~~l~~lP~l~~l~~L~~l  251 (350)
T 4ay9_X          206 ILDISRTRIHSLPSYGLENLK---KLRARSTYNLKKLPTLEKLVALMEA  251 (350)
T ss_dssp             EEECTTSCCCCCCSSSCTTCC---EEECTTCTTCCCCCCTTTCCSCCEE
T ss_pred             hhhcCCCCcCccChhhhccch---HhhhccCCCcCcCCCchhCcChhhC
Confidence            999999999977666665554   5555455444577764444444433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=1.5e-18  Score=174.05  Aligned_cols=174  Identities=21%  Similarity=0.229  Sum_probs=145.8

Q ss_pred             eeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCccc
Q 041976          530 YLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLN  609 (901)
Q Consensus       530 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~  609 (901)
                      .++++++.+.......++++++|++++|++++..+..+..+++|++|++++|.+++..+..+..+. +|++|++++|+++
T Consensus        11 ~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~   89 (208)
T 2o6s_A           11 TVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-SLTYLNLSTNQLQ   89 (208)
T ss_dssp             EEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCC
T ss_pred             EEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC-CcCEEECCCCcCC
Confidence            444455555444444466788888888888877777788999999999999999855444556665 9999999999999


Q ss_pred             ccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCC
Q 041976          610 GSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEP  689 (901)
Q Consensus       610 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~  689 (901)
                      +..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++.        
T Consensus        90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------  161 (208)
T 2o6s_A           90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------  161 (208)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------
T ss_pred             ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------
Confidence            887778899999999999999999888888999999999999999999888888899999999999999876        


Q ss_pred             CCCCCCCcEEEcCCCccccCCcHH
Q 041976          690 KESFPKLRILDLSINNFSGYLPER  713 (901)
Q Consensus       690 ~~~l~~L~~L~Ls~n~l~~~~p~~  713 (901)
                       ..+++|+.|+++.|+++|.+|..
T Consensus       162 -~~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          162 -CTCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             -CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred             -cCCCCHHHHHHHHHhCCceeecc
Confidence             34678999999999999999964

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=4.3e-18  Score=170.68  Aligned_cols=180  Identities=22%  Similarity=0.208  Sum_probs=149.5

Q ss_pred             ceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCc
Q 041976          221 EYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNS  300 (901)
Q Consensus       221 ~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  300 (901)
                      +.++++++.++.+|..+  .++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            56777777888887665  3589999999999887666678889999999999999987766678889999999999999


Q ss_pred             CcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCC
Q 041976          301 FFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF  379 (901)
Q Consensus       301 l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  379 (901)
                      +++..+. +..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.    
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----  163 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----  163 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC----
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC----
Confidence            9877666 67889999999999999877777788899999999999999877777788899999999999977643    


Q ss_pred             CCCCCCEEEccCccCCCCCchhhhcccc
Q 041976          380 PSKSLQNIYLSNNRLQGSIPSSIFELVN  407 (901)
Q Consensus       380 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~  407 (901)
                       ++.|+.|+++.|.++|.+|.+++.++.
T Consensus       164 -~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          164 -CPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             -TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             -CCCHHHHHHHHHhCCceeeccCccccC
Confidence             467888888888888888888776654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=2.7e-18  Score=196.57  Aligned_cols=188  Identities=23%  Similarity=0.329  Sum_probs=136.8

Q ss_pred             cCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCc
Q 041976          108 HLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFP  187 (901)
Q Consensus       108 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p  187 (901)
                      +|++|++++|.+++  +|..+.  ++|++|+|++|.++ .+|   ..+              ++|++|++++|.+++ +|
T Consensus        60 ~L~~L~Ls~n~L~~--lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l--------------~~L~~L~Ls~N~l~~-ip  116 (571)
T 3cvr_A           60 QFSELQLNRLNLSS--LPDNLP--PQITVLEITQNALI-SLP---ELP--------------ASLEYLDACDNRLST-LP  116 (571)
T ss_dssp             TCSEEECCSSCCSC--CCSCCC--TTCSEEECCSSCCS-CCC---CCC--------------TTCCEEECCSSCCSC-CC
T ss_pred             CccEEEeCCCCCCc--cCHhHc--CCCCEEECcCCCCc-ccc---ccc--------------CCCCEEEccCCCCCC-cc
Confidence            66666666666655  555442  56666666666655 444   223              555555555555544 33


Q ss_pred             cccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCC
Q 041976          188 INIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQL  267 (901)
Q Consensus       188 ~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L  267 (901)
                      . +..                          +|++|++++|.++.+|.   .+++|++|++++|.+++ +|.   .+++|
T Consensus       117 ~-l~~--------------------------~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L  162 (571)
T 3cvr_A          117 E-LPA--------------------------SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSL  162 (571)
T ss_dssp             C-CCT--------------------------TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTC
T ss_pred             h-hhc--------------------------CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCc
Confidence            3 322                          55555566666666666   67899999999999986 665   57899


Q ss_pred             CEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCC-------CEEECCCCCCCCCCCccccCCcCCcE
Q 041976          268 TLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQV-------SFFDLSNNQLAGPIPSHGSRLQNLVL  340 (901)
Q Consensus       268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~  340 (901)
                      ++|++++|.+++ +|. |.  ++|++|++++|.++.. |.+..  +|       +.|++++|.++ .+|..+..+++|+.
T Consensus       163 ~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~l-p~~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~  234 (571)
T 3cvr_A          163 EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESL-PAVPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCT  234 (571)
T ss_dssp             CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSC-CCCC----------CCEEEECCSSCCC-CCCGGGGGSCTTEE
T ss_pred             CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCch-hhHHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCE
Confidence            999999999996 676 66  8999999999999954 44443  67       99999999999 58888888999999


Q ss_pred             EECcCCcCcccCChhhcCCC
Q 041976          341 IRLNNNSFSGTIPSWLFSLP  360 (901)
Q Consensus       341 L~L~~n~l~~~~~~~l~~l~  360 (901)
                      |++++|.+++.+|..+..++
T Consensus       235 L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          235 IILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             EECCSSSCCHHHHHHHHHHH
T ss_pred             EEeeCCcCCCcCHHHHHHhh
Confidence            99999999999998877654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=1.2e-17  Score=193.38  Aligned_cols=172  Identities=22%  Similarity=0.324  Sum_probs=85.1

Q ss_pred             cccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcC
Q 041976          103 LFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCIL  182 (901)
Q Consensus       103 l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~  182 (901)
                      +..+++|++|++++|.+..  ++ .++.+++|++|+|++|.+.+..|  +..+              ++|++|+|++|.+
T Consensus        39 ~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l--------------~~L~~L~Ls~N~l   99 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNL--------------KNLGWLFLDENKI   99 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGC--------------TTCCEEECCSSCC
T ss_pred             hhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccC--------------CCCCEEECcCCCC
Confidence            3455555555555555544  22 35555555555555555543222  4444              5555555555555


Q ss_pred             CCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCcccc
Q 041976          183 QGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLG  262 (901)
Q Consensus       183 ~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~  262 (901)
                      .+ + ..+..+++|++|+|++|                        .+..+ +.+..+++|+.|+|++|.+.+.  ..+.
T Consensus       100 ~~-l-~~l~~l~~L~~L~Ls~N------------------------~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~  150 (605)
T 1m9s_A          100 KD-L-SSLKDLKKLKSLSLEHN------------------------GISDI-NGLVHLPQLESLYLGNNKITDI--TVLS  150 (605)
T ss_dssp             CC-C-TTSTTCTTCCEEECTTS------------------------CCCCC-GGGGGCTTCSEEECCSSCCCCC--GGGG
T ss_pred             CC-C-hhhccCCCCCEEEecCC------------------------CCCCC-ccccCCCccCEEECCCCccCCc--hhhc
Confidence            43 1 23444555555555554                        44443 2344455555555555555432  3444


Q ss_pred             CCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCC
Q 041976          263 NLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLA  325 (901)
Q Consensus       263 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~  325 (901)
                      .+++|+.|+|++|.+++..|  +..+++|++|+|++|.+.+. +.+..+++|+.|++++|.+.
T Consensus       151 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          151 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEE
T ss_pred             ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCc
Confidence            55555555555555544333  44555555555555555432 33445555555555555544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=3.9e-17  Score=172.65  Aligned_cols=174  Identities=21%  Similarity=0.314  Sum_probs=102.3

Q ss_pred             ccccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCc
Q 041976          102 SLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCI  181 (901)
Q Consensus       102 ~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~  181 (901)
                      .+..+++|++|++++|.+..  ++ .+..+++|++|+|++|.+.+..|  ++.+              ++|++|++++|.
T Consensus        41 ~~~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l--------------~~L~~L~l~~n~  101 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANL--------------KNLGWLFLDENK  101 (291)
T ss_dssp             CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTC--------------TTCCEEECCSSC
T ss_pred             chhhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCcc--cccC--------------CCCCEEECCCCc
Confidence            34567777777777777765  33 36677777777777777664322  5555              667777777776


Q ss_pred             CCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccc
Q 041976          182 LQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASL  261 (901)
Q Consensus       182 ~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l  261 (901)
                      +.+  +..+..+++|++|++++| .+.                       .+ +.+..+++|++|++++|.+.+.  ..+
T Consensus       102 l~~--~~~l~~l~~L~~L~L~~n-~i~-----------------------~~-~~l~~l~~L~~L~l~~n~l~~~--~~l  152 (291)
T 1h6t_A          102 VKD--LSSLKDLKKLKSLSLEHN-GIS-----------------------DI-NGLVHLPQLESLYLGNNKITDI--TVL  152 (291)
T ss_dssp             CCC--GGGGTTCTTCCEEECTTS-CCC-----------------------CC-GGGGGCTTCCEEECCSSCCCCC--GGG
T ss_pred             CCC--ChhhccCCCCCEEECCCC-cCC-----------------------CC-hhhcCCCCCCEEEccCCcCCcc--hhh
Confidence            654  223666666666666666 443                       33 2345555555555555555543  345


Q ss_pred             cCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCC
Q 041976          262 GNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAG  326 (901)
Q Consensus       262 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~  326 (901)
                      ..+++|++|++++|.+++..+  +..+++|++|++++|.+++. +.+..+++|+.|++++|++..
T Consensus       153 ~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          153 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEEEEEEC
T ss_pred             ccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-hhhccCCCCCEEECcCCcccC
Confidence            555566666666665554333  55566666666666655542 335556666666666665543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.72  E-value=4.8e-17  Score=164.20  Aligned_cols=141  Identities=17%  Similarity=0.187  Sum_probs=92.7

Q ss_pred             CCEEECCCCcCcccCCc-chhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeC
Q 041976          573 LDVLDLSNNRLNGTIPE-CIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDI  651 (901)
Q Consensus       573 L~~L~Ls~n~l~~~~p~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  651 (901)
                      +++|++++|.+++..|. .+..+. +|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            45666666666544332 234443 6666666666666666666667777777777777776666666777777777777


Q ss_pred             CCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHH
Q 041976          652 GNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLE  716 (901)
Q Consensus       652 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  716 (901)
                      ++|++.+..|..|..+++|++|+|++|++.+..+...  ..+++|+.|++++|++.+..+..++.
T Consensus       113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~~l~  175 (220)
T 2v70_A          113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANPFNCNCYLAWLG  175 (220)
T ss_dssp             TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCCEECSGGGHHHH
T ss_pred             CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcCCcCCCchHHHH
Confidence            7777777666667777777777777777766555443  56777777777777777766655543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=6.3e-17  Score=163.29  Aligned_cols=140  Identities=20%  Similarity=0.241  Sum_probs=65.0

Q ss_pred             CCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeC
Q 041976          572 ALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDI  651 (901)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  651 (901)
                      .+++|++++|.+++..+..+..+. +|++|+|++|++++..|..|..+++|++|+|++|+++...+..|..+++|++|++
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCT-TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCC-CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            344444444444432222333333 4444444444444444444444444444444444444443344444455555555


Q ss_pred             CCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHH
Q 041976          652 GNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERF  714 (901)
Q Consensus       652 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~  714 (901)
                      ++|++.+..|..|..+++|++|+|++|++.+..+...  ..+++|+.|++++|++.....-.+
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c~l~~  172 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF--SPLRAIQTMHLAQNPFICDCHLKW  172 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCEECSGGGHH
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH--hCCCCCCEEEeCCCCcCCCCccHH
Confidence            5555544444445555555555555555544333222  345555555666665554443333

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.72  E-value=2.2e-17  Score=180.54  Aligned_cols=177  Identities=26%  Similarity=0.305  Sum_probs=113.7

Q ss_pred             CEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCcc-CCCccCEEEccCCcccccCCccccCCCcccEEeCC
Q 041976          574 DVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFA-ESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIG  652 (901)
Q Consensus       574 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  652 (901)
                      +.++++++.++ .+|..+.   +.++.|+|++|++++..+..|. .+++|++|+|++|++++..+..|.++++|++|+++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            46777777776 5665443   3677788888887777777676 77777788887777777777777777777777777


Q ss_pred             CCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCccc
Q 041976          653 NIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLR  732 (901)
Q Consensus       653 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~  732 (901)
                      +|++....+..|.++++|++|+|++|++.+..+...  ..+++|+.|+|++|.++                         
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N~l~-------------------------  149 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQIS-------------------------  149 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCC-------------------------
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh--CCcccCCEEECCCCcCC-------------------------
Confidence            777776666666666666666666666554333222  33444444444444443                         


Q ss_pred             ccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhh---hccCCCCeEeCCCCcCCCCCCccccCCCC-
Q 041976          733 YLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVI---GKLHSLRLLNLSHNHFTGQIPSSLGNLAK-  808 (901)
Q Consensus       733 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~-  808 (901)
                                                              +..+..|   ..+++|++|+|++|+|++..+..|..++. 
T Consensus       150 ----------------------------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~  189 (361)
T 2xot_A          150 ----------------------------------------RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW  189 (361)
T ss_dssp             ----------------------------------------SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHH
T ss_pred             ----------------------------------------eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHh
Confidence                                                    2222222   45677777777777777666666777665 


Q ss_pred             -CCEEeCCCCccCC
Q 041976          809 -LESLDLSSNNVAG  821 (901)
Q Consensus       809 -L~~L~Ls~N~l~~  821 (901)
                       ++.|+|++|.+..
T Consensus       190 ~l~~l~l~~N~~~C  203 (361)
T 2xot_A          190 VKNGLYLHNNPLEC  203 (361)
T ss_dssp             HHTTEECCSSCEEC
T ss_pred             hcceEEecCCCccC
Confidence             3677777777764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=8.8e-17  Score=162.24  Aligned_cols=151  Identities=18%  Similarity=0.228  Sum_probs=130.5

Q ss_pred             ceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCc
Q 041976          221 EYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNS  300 (901)
Q Consensus       221 ~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  300 (901)
                      +.+++++++++.+|..+.  +++++|++++|.+.+..+..+..+++|++|++++|.+++..|..|..+++|++|++++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            577888888888888765  689999999999987777788899999999999999998888899999999999999999


Q ss_pred             CcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccc
Q 041976          301 FFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLS  373 (901)
Q Consensus       301 l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  373 (901)
                      ++...+. +..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            9876666 678899999999999998888888999999999999999998877777888888888888888765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.71  E-value=4.6e-17  Score=172.09  Aligned_cols=170  Identities=24%  Similarity=0.299  Sum_probs=86.2

Q ss_pred             CCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEE
Q 041976          191 FHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLL  270 (901)
Q Consensus       191 ~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L  270 (901)
                      ..+++|++|++++| .+.. ++.+..+++|++|++++|.++.++. +..+++|++|++++|.+.+ + ..+..+++|++|
T Consensus        43 ~~l~~L~~L~l~~~-~i~~-~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L  117 (291)
T 1h6t_A           43 NELNSIDQIIANNS-DIKS-VQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSL  117 (291)
T ss_dssp             HHHHTCCEEECTTS-CCCC-CTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEE
T ss_pred             hhcCcccEEEccCC-Cccc-ChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEE
Confidence            34666777777766 4432 2444555555555555555555544 5555555555555555543 2 235555555555


Q ss_pred             ECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcc
Q 041976          271 HLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSG  350 (901)
Q Consensus       271 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  350 (901)
                      ++++|.+++.  ..+..+++|++|++++|.+++. +.+..+++|++|++++|.+++..+  +..+++|++|++++|.+++
T Consensus       118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence            5555555532  2345555555555555555433 334445555555555555543322  4444555555555554443


Q ss_pred             cCChhhcCCCCCcEEEccCCcc
Q 041976          351 TIPSWLFSLPLLEYVRLSDNQL  372 (901)
Q Consensus       351 ~~~~~l~~l~~L~~L~L~~n~l  372 (901)
                      . + .+..+++|+.|++++|.+
T Consensus       193 l-~-~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          193 L-R-ALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             C-G-GGTTCTTCSEEEEEEEEE
T ss_pred             C-h-hhccCCCCCEEECcCCcc
Confidence            2 2 244444444444444444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.71  E-value=1.7e-16  Score=160.16  Aligned_cols=155  Identities=21%  Similarity=0.212  Sum_probs=140.0

Q ss_pred             CceeeccCccccCCCCCCCCCCcEEEccCCccccccc-cccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCC
Q 041976          528 LGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEII-HSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNN  606 (901)
Q Consensus       528 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n  606 (901)
                      -+.+++++|.+.......+..+++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+. +|++|++++|
T Consensus        13 ~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N   91 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLTSN   91 (220)
T ss_dssp             TTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSS
T ss_pred             CCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-CCCEEECCCC
Confidence            3689999999988665667889999999999998755 4588999999999999999977776788776 9999999999


Q ss_pred             cccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCccc
Q 041976          607 RLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGS  683 (901)
Q Consensus       607 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~  683 (901)
                      ++++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|++++..|..|..+++|++|++++|++.+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            99988888899999999999999999999999999999999999999999999999999999999999999998754

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=9.9e-17  Score=185.84  Aligned_cols=169  Identities=25%  Similarity=0.307  Sum_probs=124.1

Q ss_pred             CeEEEEEcCCCCCCCCCCCCcccccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCccccccccccc
Q 041976           81 GNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTV  160 (901)
Q Consensus        81 ~~v~~l~L~~~~~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~  160 (901)
                      .+++.|+++++.+... +   .+..+++|++|+|++|.+.+  ++. +..+++|++|+|++|.+.+ +| .+..+     
T Consensus        43 ~~L~~L~l~~n~i~~l-~---~l~~l~~L~~L~Ls~N~l~~--~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l-----  108 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSV-Q---GIQYLPNVTKLFLNGNKLTD--IKP-LTNLKNLGWLFLDENKIKD-LS-SLKDL-----  108 (605)
T ss_dssp             TTCCCCBCTTCCCCCC-T---TGGGCTTCCEEECTTSCCCC--CGG-GGGCTTCCEEECCSSCCCC-CT-TSTTC-----
T ss_pred             CCCCEEECcCCCCCCC-h---HHccCCCCCEEEeeCCCCCC--Chh-hccCCCCCEEECcCCCCCC-Ch-hhccC-----
Confidence            4678899999887753 2   68899999999999999988  444 9999999999999999974 34 67777     


Q ss_pred             chhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCC
Q 041976          161 VLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNL  240 (901)
Q Consensus       161 ~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l  240 (901)
                               ++|++|+|++|.+.+.  ..+..+++|+.|+|++| .+.+. +                       .+..+
T Consensus       109 ---------~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N-~l~~l-~-----------------------~l~~l  152 (605)
T 1m9s_A          109 ---------KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNN-KITDI-T-----------------------VLSRL  152 (605)
T ss_dssp             ---------TTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSS-CCCCC-G-----------------------GGGSC
T ss_pred             ---------CCCCEEEecCCCCCCC--ccccCCCccCEEECCCC-ccCCc-h-----------------------hhccc
Confidence                     9999999999999863  45788888888888888 55543 3                       45555


Q ss_pred             CCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcc
Q 041976          241 KLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFG  303 (901)
Q Consensus       241 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  303 (901)
                      ++|++|+|++|.+.+..|  +..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+
T Consensus       153 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          153 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             CCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence            566666666666554433  55666666666666666543  245666666666666666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=8.2e-19  Score=202.13  Aligned_cols=215  Identities=17%  Similarity=0.189  Sum_probs=104.3

Q ss_pred             ccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEE-cCCCcC
Q 041976          104 FHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLS-LSDCIL  182 (901)
Q Consensus       104 ~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~-Ls~~~~  182 (901)
                      ...++|+.|+|++|.+..  +|+.+++|++|+.|++++|.....+|..+..++..+..+..+.++ ++|+.|+ ++.+.+
T Consensus       346 ~~~~~L~~L~Ls~n~L~~--Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l-~~L~~L~~l~~n~~  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTV--LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF-STLKAVDPMRAAYL  422 (567)
T ss_dssp             STTTTSSSCCCCHHHHHH--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH-HHHHHHCGGGHHHH
T ss_pred             ccCccceeccCChhhHHh--hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHH-HhcccCcchhhccc
Confidence            457788888888887764  788888888888888866641111111111111111122222222 5566665 343322


Q ss_pred             CCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCcccc
Q 041976          183 QGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLG  262 (901)
Q Consensus       183 ~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~  262 (901)
                      .           .|+.+.+++| .+... +    ...|++|++++|.++.+|. ++.+++|++|++++|.+. .+|..++
T Consensus       423 ~-----------~L~~l~l~~n-~i~~l-~----~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~  483 (567)
T 1dce_A          423 D-----------DLRSKFLLEN-SVLKM-E----YADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALA  483 (567)
T ss_dssp             H-----------HHHHHHHHHH-HHHHH-H----HTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred             c-----------hhhhhhhhcc-ccccc-C----ccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhh
Confidence            1           1111111111 11100 0    0124445555555555544 555555555555555555 4455555


Q ss_pred             CCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccC-CC-CCCCCCCCEEECCCCCCCCCCCc---cccCCcC
Q 041976          263 NLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEI-PD-IFNLTQVSFFDLSNNQLAGPIPS---HGSRLQN  337 (901)
Q Consensus       263 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~-~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~  337 (901)
                      ++++|++|++++|.+++ +| .++.+++|++|++++|.+++.. |. +..+++|+.|++++|.+++..|.   .+..+++
T Consensus       484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~  561 (567)
T 1dce_A          484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS  561 (567)
T ss_dssp             GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred             cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence            55555555555555553 34 4555555555555555555543 33 55555555555555555543221   1223555


Q ss_pred             CcEEE
Q 041976          338 LVLIR  342 (901)
Q Consensus       338 L~~L~  342 (901)
                      |+.|+
T Consensus       562 L~~L~  566 (567)
T 1dce_A          562 VSSIL  566 (567)
T ss_dssp             CSEEE
T ss_pred             cCccC
Confidence            66554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.69  E-value=2e-18  Score=205.38  Aligned_cols=220  Identities=20%  Similarity=0.148  Sum_probs=94.1

Q ss_pred             CCHHHHHHHHHhhhcCcCCCCCccccccCCCcCCCCCC-CCCCcCccceeecCCCCeEEEEEcCCCCCCCCCCCCccccc
Q 041976           27 CPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKK-DTNCCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFH  105 (901)
Q Consensus        27 ~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~l~~w~~-~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~g~~~~~~~l~~  105 (901)
                      ..+.++++|+++........         +..-..|.. .+..+.|.++.++  ++++++++|.++.+.... .  .   
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~~~-~--~---  191 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSK---------TAKKQQPTGDSTPSGTATNSAVS--TPLTPKIELFANGKDEAN-Q--A---  191 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHH---------TTC------------------------------------------------
T ss_pred             ccccchhhhhhhhhhccccc---------CcccCCCcCCCCccccCCCceec--CCccceEEeeCCCCCcch-h--h---
Confidence            45678899999998764322         123455754 3456789998886  478999999988876532 2  2   


Q ss_pred             CccCceEeCCCCCCCCC--------cCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEc
Q 041976          106 LLHLQTLNLSHNDFDYS--------EISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSL  177 (901)
Q Consensus       106 l~~L~~L~Ls~n~~~~~--------~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~L  177 (901)
                        .++.++|+.+.+.+.        ..+..+..+++|++|+|++|.+. .+|..+..+              ++|++|+|
T Consensus       192 --~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l--------------~~L~~L~L  254 (727)
T 4b8c_D          192 --LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKY--------------DFLTRLYL  254 (727)
T ss_dssp             --------------------------------CCCCCCEEECTTSCCS-CCCGGGGGC--------------CSCSCCBC
T ss_pred             --HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCC--------------CCCCEEEe
Confidence              234444444443331        13455666666666666666665 566655555              66666666


Q ss_pred             CCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCC
Q 041976          178 SDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPV  257 (901)
Q Consensus       178 s~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~  257 (901)
                      ++|.++ .+|..++++++|++|+|++| .++                       .+|..++.+++|++|+|++|.+. .+
T Consensus       255 s~N~l~-~lp~~~~~l~~L~~L~Ls~N-~l~-----------------------~lp~~~~~l~~L~~L~L~~N~l~-~l  308 (727)
T 4b8c_D          255 NGNSLT-ELPAEIKNLSNLRVLDLSHN-RLT-----------------------SLPAELGSCFQLKYFYFFDNMVT-TL  308 (727)
T ss_dssp             TTSCCS-CCCGGGGGGTTCCEEECTTS-CCS-----------------------SCCSSGGGGTTCSEEECCSSCCC-CC
T ss_pred             eCCcCc-ccChhhhCCCCCCEEeCcCC-cCC-----------------------ccChhhcCCCCCCEEECCCCCCC-cc
Confidence            666665 55555555555555555555 333                       33466666666666666666665 55


Q ss_pred             CccccCCCCCCEEECCCCcCCCCCCccccCCCC-CCEEEccCCcCcccCC
Q 041976          258 PASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQ-LTYLDLSSNSFFGEIP  306 (901)
Q Consensus       258 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~n~l~~~~~  306 (901)
                      |..|+++++|++|+|++|.+++.+|..+..+.. +..+++++|.+++.+|
T Consensus       309 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          309 PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence            666666666666666666666666655543211 1224556666655444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.69  E-value=5e-16  Score=157.85  Aligned_cols=151  Identities=22%  Similarity=0.198  Sum_probs=123.8

Q ss_pred             cceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCC
Q 041976          220 IEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSN  299 (901)
Q Consensus       220 L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  299 (901)
                      .+.++++++.+..+|..+.  ++|++|++++|.+.+..|..+.++++|++|++++|.++...+..|..+++|++|++++|
T Consensus        21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            4567888888888887665  78999999999998887888888899999999999987666667788889999999999


Q ss_pred             cCcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccc
Q 041976          300 SFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLS  373 (901)
Q Consensus       300 ~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  373 (901)
                      ++++..+. +..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            88877666 677888888888888888 67788888888888888888888766667777777887777777665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.69  E-value=4e-16  Score=158.58  Aligned_cols=154  Identities=21%  Similarity=0.173  Sum_probs=73.3

Q ss_pred             eeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCccc
Q 041976          530 YLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLN  609 (901)
Q Consensus       530 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~  609 (901)
                      .++++++.+.......+++|++|++++|.+++..+..+..+++|++|++++|.+.                         
T Consensus        23 ~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-------------------------   77 (229)
T 3e6j_A           23 TVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-------------------------   77 (229)
T ss_dssp             EEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------------
T ss_pred             EeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-------------------------
Confidence            3444444433333333344555555555555544555555555555555555554                         


Q ss_pred             ccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCC
Q 041976          610 GSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEP  689 (901)
Q Consensus       610 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~  689 (901)
                      ...+..|..+++|++|+|++|++++..+..|..+++|++|++++|++. .+|..+..+++|++|++++|++.+..+..  
T Consensus        78 ~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~--  154 (229)
T 3e6j_A           78 ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA--  154 (229)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT--
T ss_pred             CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH--
Confidence            333334444444444444444444444444444444444555444444 23444444555555555555554332221  


Q ss_pred             CCCCCCCcEEEcCCCccccCCc
Q 041976          690 KESFPKLRILDLSINNFSGYLP  711 (901)
Q Consensus       690 ~~~l~~L~~L~Ls~n~l~~~~p  711 (901)
                      +..+++|+.|++++|++.+..+
T Consensus       155 ~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          155 FDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             TTTCTTCCEEECTTSCBCTTBG
T ss_pred             HhCCCCCCEEEeeCCCccCCcc
Confidence            2445556666666666655443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.68  E-value=1.1e-16  Score=175.01  Aligned_cols=177  Identities=23%  Similarity=0.162  Sum_probs=117.2

Q ss_pred             eeccCccccCCCCCCCCCCcEEEccCCccccccccccc-cCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCccc
Q 041976          531 LDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSIC-DIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLN  609 (901)
Q Consensus       531 L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~  609 (901)
                      ++++++.+.......+..++.|++++|++++..+..+. .+++|++|++++|.+++..+..+..+. +|++|+|++|+++
T Consensus        23 l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~l~  101 (361)
T 2xot_A           23 LSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLSSNHLH  101 (361)
T ss_dssp             EECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCC
T ss_pred             EEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC-CCCEEECCCCcCC
Confidence            33444444333223345566777777777766666666 777788888888887765555666665 7888888888877


Q ss_pred             ccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccc---cCCCCCcEEEccCCcCcccCCC
Q 041976          610 GSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWL---GNLPELQVLVLRSNKFHGSVRE  686 (901)
Q Consensus       610 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~L~~n~~~~~~~~  686 (901)
                      +..+..|..+++|++|+|++|++++..|..|..+++|++|++++|++++..+..+   ..+++|++|+|++|++.+..+.
T Consensus       102 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  181 (361)
T 2xot_A          102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT  181 (361)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHH
T ss_pred             cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH
Confidence            7777777777888888888888877777777777888888888887777655555   4577777777777777643221


Q ss_pred             CCCCCCCCC--CcEEEcCCCccccCC
Q 041976          687 FEPKESFPK--LRILDLSINNFSGYL  710 (901)
Q Consensus       687 ~~~~~~l~~--L~~L~Ls~n~l~~~~  710 (901)
                      .  +..++.  ++.|++++|++....
T Consensus       182 ~--~~~l~~~~l~~l~l~~N~~~C~C  205 (361)
T 2xot_A          182 D--LQKLPAWVKNGLYLHNNPLECDC  205 (361)
T ss_dssp             H--HHHSCHHHHTTEECCSSCEECCH
T ss_pred             H--hhhccHhhcceEEecCCCccCCc
Confidence            1  123333  366777777776543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=1.3e-16  Score=165.71  Aligned_cols=168  Identities=20%  Similarity=0.293  Sum_probs=95.0

Q ss_pred             cCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCC
Q 041976          105 HLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQG  184 (901)
Q Consensus       105 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~  184 (901)
                      .+++++.++++++.+++  ++ .+..+++|++|++++|.+. .+| .+..+              ++|++|++++|.+++
T Consensus        17 ~l~~l~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l--------------~~L~~L~L~~N~i~~   77 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFF--------------TNLKELHLSHNQISD   77 (263)
T ss_dssp             HHHHHHHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGC--------------TTCCEEECCSSCCCC
T ss_pred             HHHHHHHHHhcCCCccc--cc-chhhcCcCcEEECcCCCcc-cch-HHhhC--------------CCCCEEECCCCccCC
Confidence            46667777778777766  33 4677788888888888776 455 56666              778888888887775


Q ss_pred             CCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCC
Q 041976          185 NFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNL  264 (901)
Q Consensus       185 ~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l  264 (901)
                      ..+  +.++++|++|++++| .+++ +|.... ++|++|++++|.++.++ .+..+++|++|++++|++++. + .+..+
T Consensus        78 ~~~--l~~l~~L~~L~L~~N-~l~~-l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l  149 (263)
T 1xeu_A           78 LSP--LKDLTKLEELSVNRN-RLKN-LNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-MLGFL  149 (263)
T ss_dssp             CGG--GTTCSSCCEEECCSS-CCSC-CTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-GGGGC
T ss_pred             Chh--hccCCCCCEEECCCC-ccCC-cCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-HHccC
Confidence            544  777777777777777 5554 332222 44555555555554442 344444444444444444432 1 34444


Q ss_pred             CCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcC
Q 041976          265 TQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSF  301 (901)
Q Consensus       265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  301 (901)
                      ++|++|++++|.+++.  ..+..+++|++|++++|.+
T Consensus       150 ~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          150 SKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             TTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred             CCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence            4444444444444432  2334444444444444433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=3.7e-19  Score=205.04  Aligned_cols=205  Identities=19%  Similarity=0.127  Sum_probs=160.1

Q ss_pred             ccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCc-------------CCCCCccccCCCC
Q 041976          128 FSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCI-------------LQGNFPINIFHLP  194 (901)
Q Consensus       128 l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~-------------~~~~~p~~l~~l~  194 (901)
                      +..+++|+.|+|++|.+. .+|.+++++              ++|+.|++++|.             ..+..|..++.++
T Consensus       345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l--------------~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~  409 (567)
T 1dce_A          345 SATDEQLFRCELSVEKST-VLQSELESC--------------KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS  409 (567)
T ss_dssp             CSTTTTSSSCCCCHHHHH-HHHHHHHHH--------------HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHH
T ss_pred             cccCccceeccCChhhHH-hhHHHHHHH--------------HHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHH
Confidence            367899999999999986 889999998              899999997775             5566777778888


Q ss_pred             CCCEEe-CCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECC
Q 041976          195 NPQMIR-LSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLM  273 (901)
Q Consensus       195 ~L~~L~-L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~  273 (901)
                      +|+.|+ ++.| .          +..|+.+.+++|.+..+|.     ..|++|++++|.+++ +|. ++.+++|++|+++
T Consensus       410 ~L~~L~~l~~n-~----------~~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls  471 (567)
T 1dce_A          410 TLKAVDPMRAA-Y----------LDDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLS  471 (567)
T ss_dssp             HHHHHCGGGHH-H----------HHHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECC
T ss_pred             hcccCcchhhc-c----------cchhhhhhhhcccccccCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecC
Confidence            888887 5554 2          2346666677777666543     258889999998886 665 8888999999999


Q ss_pred             CCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCC-CccccCCcCCcEEECcCCcCcccC
Q 041976          274 HNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPI-PSHGSRLQNLVLIRLNNNSFSGTI  352 (901)
Q Consensus       274 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~  352 (901)
                      +|.++ .+|..++.+++|++|+|++|.+++ +|.+..+++|++|++++|.+++.. |..++.+++|++|++++|.+++..
T Consensus       472 ~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          472 HNRLR-ALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             SSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             ccccc-ccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            99888 778888899999999999998887 457888888888888888888766 888888888888888888887654


Q ss_pred             Ch---hhcCCCCCcEEEc
Q 041976          353 PS---WLFSLPLLEYVRL  367 (901)
Q Consensus       353 ~~---~l~~l~~L~~L~L  367 (901)
                      |.   .+..+++|+.|++
T Consensus       550 ~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          550 GIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCTTHHHHHCTTCSEEEC
T ss_pred             cHHHHHHHHCcccCccCC
Confidence            42   2334677777753

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=1.8e-16  Score=157.18  Aligned_cols=111  Identities=20%  Similarity=0.243  Sum_probs=54.1

Q ss_pred             cccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCC
Q 041976          236 SIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVS  315 (901)
Q Consensus       236 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~  315 (901)
                      .+..+++|++|++++|.+.+..+..++.+++|++|++++|.+++..|..++.+++|++|++++|...+.++.+..+++|+
T Consensus        83 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~  162 (197)
T 4ezg_A           83 PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELK  162 (197)
T ss_dssp             GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCC
T ss_pred             hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCC
Confidence            45555555555555555555455555555555555555555555445555555555555555554222223344444444


Q ss_pred             EEECCCCCCCCCCCccccCCcCCcEEECcCCcC
Q 041976          316 FFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSF  348 (901)
Q Consensus       316 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  348 (901)
                      +|++++|.+++ ++ .+..+++|++|++++|++
T Consensus       163 ~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          163 SLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             EEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred             EEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence            44444444442 11 334444444444444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=3.7e-16  Score=154.90  Aligned_cols=150  Identities=19%  Similarity=0.252  Sum_probs=96.2

Q ss_pred             CCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEc
Q 041976          217 TSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDL  296 (901)
Q Consensus       217 ~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  296 (901)
                      +++|++|++++|.+..+| .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+++..+..++.+++|++|++
T Consensus        43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            345556666666666665 5677777777777777554  2346667777777777777777666666777777777777


Q ss_pred             cCCcCcccCCC-CCCCCCCCEEECCCCC-CCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccc
Q 041976          297 SSNSFFGEIPD-IFNLTQVSFFDLSNNQ-LAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLS  373 (901)
Q Consensus       297 s~n~l~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  373 (901)
                      ++|.+++..+. +..+++|++|++++|. +. .++ .+..+++|++|++++|.+++. + .+..+++|++|++++|++.
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence            77777654444 6667777777777776 43 333 466666777777777766642 2 4566666666666666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.64  E-value=1.8e-16  Score=156.22  Aligned_cols=114  Identities=21%  Similarity=0.307  Sum_probs=95.1

Q ss_pred             ccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeee
Q 041976          758 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLN  837 (901)
Q Consensus       758 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  837 (901)
                      +++|++|+|++|++++..|..|+++++|++|+|++|+|++..|..|+++++|++|+|++|++++..|..+..+++|++|+
T Consensus        53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (192)
T 1w8a_A           53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence            57788999999999988899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCccCCCCCCCCCCcccccccCCcCCCCCC
Q 041976          838 LSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFP  871 (901)
Q Consensus       838 Ls~N~l~g~iP~~~~~~~~~~~~~~~n~~lcg~~  871 (901)
                      |++|++.+..|.......+....+.++...|+.|
T Consensus       133 L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          133 LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             eCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence            9999999876532111112233445566667655

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.63  E-value=1.1e-15  Score=158.73  Aligned_cols=166  Identities=23%  Similarity=0.234  Sum_probs=94.1

Q ss_pred             CcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccC
Q 041976          219 PIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSS  298 (901)
Q Consensus       219 ~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  298 (901)
                      ++..++++.+.++.++ .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++
T Consensus        20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred             HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence            3445555555555554 45566666666666666653 33 45666666666666666664333  66666666666666


Q ss_pred             CcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCC
Q 041976          299 NSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDE  378 (901)
Q Consensus       299 n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  378 (901)
                      |++++. +.+.. ++|++|++++|.+++.  ..+..+++|++|++++|++++. + .+..+++|++|++++|++.+....
T Consensus        95 N~l~~l-~~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~~~l  168 (263)
T 1xeu_A           95 NRLKNL-NGIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNTGGL  168 (263)
T ss_dssp             SCCSCC-TTCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBCTTS
T ss_pred             CccCCc-Ccccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcchHHh
Confidence            666643 23222 6666666666666542  2456666666666666666543 2 455666666666666665544222


Q ss_pred             CCCCCCCEEEccCccCC
Q 041976          379 FPSKSLQNIYLSNNRLQ  395 (901)
Q Consensus       379 ~~~~~L~~L~L~~n~l~  395 (901)
                      ..+++|+.|++++|.++
T Consensus       169 ~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          169 TRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             TTCCCCCEEEEEEEEEE
T ss_pred             ccCCCCCEEeCCCCccc
Confidence            24445555555555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=1.6e-15  Score=163.53  Aligned_cols=267  Identities=14%  Similarity=0.173  Sum_probs=169.8

Q ss_pred             CCcEEEccCCcccccccccccc-CCCCCEEECCCCcCc--ccCCcchhcCCCCccEEECCCCcccccCCcCccC------
Q 041976          548 SLRVLLISNNQFTGEIIHSICD-IIALDVLDLSNNRLN--GTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAE------  618 (901)
Q Consensus       548 ~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~--~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------  618 (901)
                      +++.|.++++ +.......+.. +++|++|||++|++.  ...+.   ..+ .+..+.+..|.   +.+.+|.+      
T Consensus        26 ~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~-~~~~~~~~~~~---I~~~aF~~~~~~~~   97 (329)
T 3sb4_A           26 SITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYP-NGKFYIYMANF---VPAYAFSNVVNGVT   97 (329)
T ss_dssp             HCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSG-GGCCEEECTTE---ECTTTTEEEETTEE
T ss_pred             ceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccc-ccccccccccc---cCHHHhcccccccc
Confidence            4555555543 22222223333 677888888888776  21111   111 23445555553   33456777      


Q ss_pred             --CCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccC--CCCCCCCCCC
Q 041976          619 --SNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSV--REFEPKESFP  694 (901)
Q Consensus       619 --l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~--~~~~~~~~l~  694 (901)
                        +++|+.|+|.+ .++.+.+.+|.+|++|+++++++|.+..+.+.+|.++.++..+....+......  -....+..+.
T Consensus        98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~  176 (329)
T 3sb4_A           98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE  176 (329)
T ss_dssp             EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred             cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence              88888888888 777777777888888888888888887777777877777777666553221000  0111223344


Q ss_pred             CCc-EEEcCCCccccCCcHHHHHh---hHhhhcccccCCcccccCccceeceeEEeecchhH-HHhhhccceeEEEcccc
Q 041976          695 KLR-ILDLSINNFSGYLPERFLEN---LNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEI-EMQKILTVFTTIDFSSN  769 (901)
Q Consensus       695 ~L~-~L~Ls~n~l~~~~p~~~~~~---l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~N  769 (901)
                      .|+ .+++...   +.++..++..   ..++..+...+.                 +..... .+...+++|++++|++|
T Consensus       177 ~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~-----------------l~~~~~~~l~~~~~~L~~l~L~~n  236 (329)
T 3sb4_A          177 PLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGK-----------------LDNADFKLIRDYMPNLVSLDISKT  236 (329)
T ss_dssp             CCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEEC-----------------CCHHHHHHHHHHCTTCCEEECTTB
T ss_pred             ccceeEEecCC---CcHHHHHhhcccCccccceEEEeee-----------------ecHHHHHHHHHhcCCCeEEECCCC
Confidence            555 4555432   2334333322   111111111100                 011111 12234789999999999


Q ss_pred             ccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCC-EEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCcc
Q 041976          770 GFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLE-SLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDG  845 (901)
Q Consensus       770 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  845 (901)
                      +++...+..|.++++|++|+|++| ++.+.+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++.
T Consensus       237 ~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~  311 (329)
T 3sb4_A          237 NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT  311 (329)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred             CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence            999877888999999999999998 8878888999999999 999998 8888888999999999999999999874

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.58  E-value=1.4e-14  Score=142.61  Aligned_cols=136  Identities=24%  Similarity=0.291  Sum_probs=103.1

Q ss_pred             CEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCc-CccCCCccCEEEccCCcccccCCccccCCCcccEEeCC
Q 041976          574 DVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPG-TFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIG  652 (901)
Q Consensus       574 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  652 (901)
                      +++++++|.++ .+|..+.   +++++|++++|++++..+. .|..+++|++|+|++|++++..|..|.++++|++|+++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            56777777775 6665443   2778888888888766654 47778888888888888887777788888888888888


Q ss_pred             CCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHH
Q 041976          653 NIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFL  715 (901)
Q Consensus       653 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  715 (901)
                      +|++++..+..|.++++|++|++++|++.+..+...  ..+++|++|++++|++.+..+..++
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~~~  147 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHLAWF  147 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGGHHH
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh--hcCCCCCEEEeCCCCccCcCcchHH
Confidence            888888777778888888888888888877666544  6678888888888888887775544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.57  E-value=5.5e-16  Score=184.45  Aligned_cols=120  Identities=25%  Similarity=0.291  Sum_probs=55.9

Q ss_pred             CccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCC
Q 041976          234 PDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQ  313 (901)
Q Consensus       234 p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~  313 (901)
                      |+.+..++.|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|+++++|++|+|++|.++..+..++++++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~  294 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ  294 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence            344444444555555554444 34444444455555555555544 4444445555555555555554422112444555


Q ss_pred             CCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhh
Q 041976          314 VSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWL  356 (901)
Q Consensus       314 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  356 (901)
                      |++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..+
T Consensus       295 L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          295 LKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             CSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             CCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            555555555444 344445555555555555555555444444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.52  E-value=1.3e-13  Score=135.68  Aligned_cols=137  Identities=21%  Similarity=0.268  Sum_probs=95.7

Q ss_pred             CEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCC
Q 041976          574 DVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGN  653 (901)
Q Consensus       574 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~  653 (901)
                      +.+++++|.++ .+|..+.   ++|++|++++|.++ .+|..|..+++|++|+|++|++++..+..|.++++|++|++++
T Consensus        13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            45667777766 5565432   36777777777776 4556777777777777777777777777777777777777777


Q ss_pred             CcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHh
Q 041976          654 IKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLEN  717 (901)
Q Consensus       654 n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~  717 (901)
                      |++++..+..|..+++|++|+|++|++....+..  +..+++|+.|++++|++.+.....++..
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~~~C~c~l~~l~~  149 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA--FNDLSALSHLAIGANPLYCDCNMQWLSD  149 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTT--TTTCTTCCEEECCSSCEECSGGGHHHHH
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhh--hhcCccccEEEeCCCCeecCCcCHHHHH
Confidence            7777777777777777777777777776544432  2567788888888888876555444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.52  E-value=2.3e-14  Score=138.00  Aligned_cols=132  Identities=23%  Similarity=0.262  Sum_probs=74.0

Q ss_pred             CCCcEEEccCCccc-cccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEE
Q 041976          547 SSLRVLLISNNQFT-GEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSL  625 (901)
Q Consensus       547 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  625 (901)
                      +++++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+. +|++|++++|++++.+|..+..+++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLP-KLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCS-SCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCC-CCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            45666666666665 44555555666666666666666533  3444443 56666666666655455555555666666


Q ss_pred             EccCCcccccC-CccccCCCcccEEeCCCCcCccCcc---ccccCCCCCcEEEccCCcCc
Q 041976          626 NLNNNELGGAI-PQSLVNCTKVEVLDIGNIKINDAFP---YWLGNLPELQVLVLRSNKFH  681 (901)
Q Consensus       626 ~Ls~N~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~~n~~~  681 (901)
                      ++++|++++.. +..+..+++|++|++++|++++..+   ..+..+++|++|++++|.+.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            66666655432 1455555666666666666555444   34555555555555555543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.51  E-value=2.5e-14  Score=137.74  Aligned_cols=127  Identities=20%  Similarity=0.143  Sum_probs=61.5

Q ss_pred             cceeecCCCCCc--cCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEcc
Q 041976          220 IEYLDVSETSFS--ELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLS  297 (901)
Q Consensus       220 L~~L~Ls~~~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  297 (901)
                      |++|++++|.+.  .+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus        26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  103 (168)
T 2ell_A           26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS  103 (168)
T ss_dssp             CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred             CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence            344444444443  4445555555666666666655543  445555555555555555554455555555555555555


Q ss_pred             CCcCcccC--CCCCCCCCCCEEECCCCCCCCCCC---ccccCCcCCcEEECcCCcC
Q 041976          298 SNSFFGEI--PDIFNLTQVSFFDLSNNQLAGPIP---SHGSRLQNLVLIRLNNNSF  348 (901)
Q Consensus       298 ~n~l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l  348 (901)
                      +|.+++..  +.+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+
T Consensus       104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            55554432  124444444444444444443222   2334444444444444433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.51  E-value=1.2e-13  Score=135.78  Aligned_cols=128  Identities=22%  Similarity=0.289  Sum_probs=102.5

Q ss_pred             cEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccC
Q 041976          550 RVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNN  629 (901)
Q Consensus       550 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  629 (901)
                      +.+++++|.++. +|..+  .+.|++|++++|.++ .+|..+..+. +|+.|++++|.+++..+..|..+++|++|+|++
T Consensus        13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            456677777663 44433  257888888888887 6777777776 888888888888887778888888888888888


Q ss_pred             CcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcc
Q 041976          630 NELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHG  682 (901)
Q Consensus       630 N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~  682 (901)
                      |++++..+..|..+++|++|++++|+++...+..|..+++|++|++++|++.+
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            88888888888888889999999888888777778888899999999998764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.50  E-value=3.1e-14  Score=133.96  Aligned_cols=126  Identities=19%  Similarity=0.146  Sum_probs=70.0

Q ss_pred             CCccEEEcCCCcCC-CCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCcc-CCccccCCCCcCEEE
Q 041976          170 SSLTSLSLSDCILQ-GNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSE-LPDSIGNLKLLGRLM  247 (901)
Q Consensus       170 ~~L~~L~Ls~~~~~-~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~  247 (901)
                      ++|++|++++|.+. +.+|..+..+++|++|++++| .+++. +.+..+++|++|++++|.++. +|..++.+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            55666666666665 455555556666666666666 44433 333444444444444444444 445555566666666


Q ss_pred             CCCCCCccC-CCccccCCCCCCEEECCCCcCCCCCC---ccccCCCCCCEEEcc
Q 041976          248 LGYSQFVGP-VPASLGNLTQLTLLHLMHNNFSGHIP---SSLSNLVQLTYLDLS  297 (901)
Q Consensus       248 L~~n~~~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls  297 (901)
                      +++|.+.+. .+..++.+++|++|++++|.+++..+   ..+..+++|++|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            666666542 23555666666666666666654443   345556666666554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.49  E-value=1.1e-13  Score=149.11  Aligned_cols=100  Identities=16%  Similarity=0.167  Sum_probs=62.4

Q ss_pred             CccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCccc-EEeCCCCcCccCccccccCCCCCcEEEc
Q 041976          597 SLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVE-VLDIGNIKINDAFPYWLGNLPELQVLVL  675 (901)
Q Consensus       597 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~L  675 (901)
                      +|+.+++++|+++.+.+.+|.++.+|+.+++.+| ++.+.+.+|.+|++|+ .+++.+ .++.+.+.+|.+|++|+.+++
T Consensus       227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l  304 (329)
T 3sb4_A          227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA  304 (329)
T ss_dssp             TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred             CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence            6666666666666666666666666666666666 5555556666666666 666665 555555666666666666666


Q ss_pred             cCCcCcccCCCCCCCCCCCCCcEEE
Q 041976          676 RSNKFHGSVREFEPKESFPKLRILD  700 (901)
Q Consensus       676 ~~n~~~~~~~~~~~~~~l~~L~~L~  700 (901)
                      ++|.+.......  +.++++|+.++
T Consensus       305 ~~n~i~~I~~~a--F~~~~~L~~ly  327 (329)
T 3sb4_A          305 TGDKITTLGDEL--FGNGVPSKLIY  327 (329)
T ss_dssp             CSSCCCEECTTT--TCTTCCCCEEE
T ss_pred             CCCccCccchhh--hcCCcchhhhc
Confidence            666665433322  35566666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.48  E-value=3.9e-14  Score=133.32  Aligned_cols=125  Identities=21%  Similarity=0.243  Sum_probs=59.3

Q ss_pred             CcCEEECCCCCCc-cCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEEC
Q 041976          242 LLGRLMLGYSQFV-GPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDL  319 (901)
Q Consensus       242 ~L~~L~L~~n~~~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l  319 (901)
                      +|++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..++.+++|++|++++|.+++.+|. +..+++|++|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            3444444444443 33344344444444444444444432  3344444444444444444443333 223444555555


Q ss_pred             CCCCCCCC-CCccccCCcCCcEEECcCCcCcccCC---hhhcCCCCCcEEEcc
Q 041976          320 SNNQLAGP-IPSHGSRLQNLVLIRLNNNSFSGTIP---SWLFSLPLLEYVRLS  368 (901)
Q Consensus       320 ~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~  368 (901)
                      ++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            55554431 22455555666666666666654444   355666666666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.48  E-value=4e-13  Score=130.48  Aligned_cols=130  Identities=25%  Similarity=0.237  Sum_probs=82.2

Q ss_pred             cceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCC
Q 041976          220 IEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSN  299 (901)
Q Consensus       220 L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  299 (901)
                      .+.+++++++++.+|..+.  ++|++|++++|++.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            3566666777777665443  56777777777776555555666777777777777776555555666677777777777


Q ss_pred             cCcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCccc
Q 041976          300 SFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGT  351 (901)
Q Consensus       300 ~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  351 (901)
                      .+++..+. +..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            66655554 45566666666666666644444455566666666666655543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.47  E-value=4.1e-13  Score=130.40  Aligned_cols=113  Identities=20%  Similarity=0.256  Sum_probs=73.1

Q ss_pred             CCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEe
Q 041976          571 IALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLD  650 (901)
Q Consensus       571 ~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  650 (901)
                      ++|++|++++|.+++..+..+..+. +|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            4556666666666543333344443 666666666666655555566677777777777777766666666777777777


Q ss_pred             CCCCcCccCccccccCCCCCcEEEccCCcCcccC
Q 041976          651 IGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSV  684 (901)
Q Consensus       651 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~  684 (901)
                      +++|++++..+..+..+++|++|++++|++.+..
T Consensus       107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A          107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            7777777666655667777777777777776543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.44  E-value=7.7e-13  Score=145.53  Aligned_cols=239  Identities=10%  Similarity=0.086  Sum_probs=147.0

Q ss_pred             CcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEcc
Q 041976          549 LRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLN  628 (901)
Q Consensus       549 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  628 (901)
                      ++.+.+.+ .++......|.++ +|+.+.+.++ ++..-..+|.+ . +|+.+.+.. .++.+.+.+|.+|.+|+.+++.
T Consensus       115 l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~  188 (401)
T 4fdw_A          115 YNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-S-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS  188 (401)
T ss_dssp             CSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-C-CCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred             ccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-C-CceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence            34444432 3444445556654 5777777665 44233333433 3 677777775 5666666777777788888887


Q ss_pred             CCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCcccc
Q 041976          629 NNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSG  708 (901)
Q Consensus       629 ~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  708 (901)
                      +|+++.+....|. +.+|+.+.+..+ +..+...+|.++++|+.+++..+ +. .+... .+.. .+|+.+.+.++ +. 
T Consensus       189 ~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~-aF~~-~~L~~i~lp~~-i~-  260 (401)
T 4fdw_A          189 KTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQE-AFRE-SGITTVKLPNG-VT-  260 (401)
T ss_dssp             TSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTT-TTTT-CCCSEEEEETT-CC-
T ss_pred             CCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccc-cccc-CCccEEEeCCC-cc-
Confidence            7777766666666 577777777743 66666677777777777777764 22 12211 1233 56666666332 22 


Q ss_pred             CCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccc-----cccchhhhccC
Q 041976          709 YLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFD-----GEISQVIGKLH  783 (901)
Q Consensus       709 ~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~l~~l~  783 (901)
                      .++...|.+                                        +++|+.+++.+|.+.     ...+..|.+++
T Consensus       261 ~I~~~aF~~----------------------------------------c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~  300 (401)
T 4fdw_A          261 NIASRAFYY----------------------------------------CPELAEVTTYGSTFNDDPEAMIHPYCLEGCP  300 (401)
T ss_dssp             EECTTTTTT----------------------------------------CTTCCEEEEESSCCCCCTTCEECTTTTTTCT
T ss_pred             EEChhHhhC----------------------------------------CCCCCEEEeCCccccCCcccEECHHHhhCCc
Confidence            222222222                                        455666666665543     34456677777


Q ss_pred             CCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCc
Q 041976          784 SLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLD  844 (901)
Q Consensus       784 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  844 (901)
                      +|+.++|. +.++.+...+|.++++|+.++|..| ++.+.+.+|.++ +|+.+++++|.+.
T Consensus       301 ~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          301 KLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             TCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             cCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            77777777 4466666677777777777777544 666667777777 7777777777665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.41  E-value=4.1e-13  Score=129.11  Aligned_cols=91  Identities=22%  Similarity=0.236  Sum_probs=85.0

Q ss_pred             ccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeee
Q 041976          758 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLN  837 (901)
Q Consensus       758 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  837 (901)
                      .+.+++|+|++|+|++..|..|+++++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|+
T Consensus        29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  108 (170)
T 3g39_A           29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW  108 (170)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence            36688999999999999999999999999999999999998888899999999999999999998888899999999999


Q ss_pred             CCCCcCccCCC
Q 041976          838 LSHNRLDGPIP  848 (901)
Q Consensus       838 Ls~N~l~g~iP  848 (901)
                      |++|++.+..+
T Consensus       109 L~~N~~~c~c~  119 (170)
T 3g39_A          109 LLNNPWDCACS  119 (170)
T ss_dssp             CCSSCBCTTBG
T ss_pred             eCCCCCCCCch
Confidence            99999987654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.39  E-value=1.6e-11  Score=134.93  Aligned_cols=91  Identities=10%  Similarity=0.037  Sum_probs=54.6

Q ss_pred             cCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCC
Q 041976          611 SIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPK  690 (901)
Q Consensus       611 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~  690 (901)
                      +.+.+|.+|++|+.+++. +.++.+...+|.+|++|+.+.+..+ +..+...+|.++ +|+.+++.+|.........  +
T Consensus       291 I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~--F  365 (401)
T 4fdw_A          291 IHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKV--W  365 (401)
T ss_dssp             ECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSS--C
T ss_pred             ECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccc--c
Confidence            445666667777777776 3466555666777777777777443 555556666666 7777777776654322221  2


Q ss_pred             CCC-CCCcEEEcCCCcc
Q 041976          691 ESF-PKLRILDLSINNF  706 (901)
Q Consensus       691 ~~l-~~L~~L~Ls~n~l  706 (901)
                      ..+ .+++.|.+..+.+
T Consensus       366 ~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          366 YGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CCSCTTCCEEEECGGGH
T ss_pred             cCCCCCccEEEeCHHHH
Confidence            334 3567777766543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.37  E-value=1.2e-12  Score=126.26  Aligned_cols=90  Identities=22%  Similarity=0.230  Sum_probs=83.4

Q ss_pred             ccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeee
Q 041976          758 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLN  837 (901)
Q Consensus       758 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  837 (901)
                      .+.++.|+|++|++++.+|..|+++++|++|+|++|+|+++.+..|..+++|+.|+|++|+|++..+..|..+++|++|+
T Consensus        32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  111 (174)
T 2r9u_A           32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY  111 (174)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence            36788999999999999999999999999999999999998888899999999999999999988887899999999999


Q ss_pred             CCCCcCccCC
Q 041976          838 LSHNRLDGPI  847 (901)
Q Consensus       838 Ls~N~l~g~i  847 (901)
                      |++|++....
T Consensus       112 L~~N~~~c~~  121 (174)
T 2r9u_A          112 LYNNPWDCEC  121 (174)
T ss_dssp             CCSSCBCTTB
T ss_pred             eCCCCccccc
Confidence            9999998643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.37  E-value=7.6e-15  Score=145.52  Aligned_cols=84  Identities=29%  Similarity=0.303  Sum_probs=66.0

Q ss_pred             ccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCC-ccccCCCCCCEEeCCCCccCCCCCcC----------
Q 041976          758 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIP-SSLGNLAKLESLDLSSNNVAGKIPKP----------  826 (901)
Q Consensus       758 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~L~~L~~L~Ls~N~l~~~~p~~----------  826 (901)
                      +++|++|++++|++++ +| .++.+++|++|++++|++++..+ ..+..+++|++|++++|++++.+|..          
T Consensus        92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~  169 (198)
T 1ds9_A           92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV  169 (198)
T ss_dssp             HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred             CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence            3567888888888886 44 58888889999999999886443 57888899999999999988776653          


Q ss_pred             CcCCCCCCeeeCCCCcCcc
Q 041976          827 LTSLTSLSVLNLSHNRLDG  845 (901)
Q Consensus       827 l~~l~~L~~L~Ls~N~l~g  845 (901)
                      +..+++|++||  +|+++.
T Consensus       170 ~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          170 VKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHHCSSCSEEC--CGGGTT
T ss_pred             HHhCCCcEEEC--CcccCH
Confidence            77888899887  677663

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.36  E-value=6.4e-13  Score=128.79  Aligned_cols=129  Identities=16%  Similarity=0.159  Sum_probs=68.1

Q ss_pred             CCCCcCEEECCCCCCccCCCccccCCC-CCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCE
Q 041976          239 NLKLLGRLMLGYSQFVGPVPASLGNLT-QLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSF  316 (901)
Q Consensus       239 ~l~~L~~L~L~~n~~~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~  316 (901)
                      ++.+|++|++++|.+.. +|. +..+. +|++|++++|.+++.  ..+..+++|++|++++|.+++..+. +..+++|++
T Consensus        17 ~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            34444444444444442 222 22222 555555555555433  3455555555555555555544434 245555666


Q ss_pred             EECCCCCCCCCCCc--cccCCcCCcEEECcCCcCcccCCh----hhcCCCCCcEEEccCCccc
Q 041976          317 FDLSNNQLAGPIPS--HGSRLQNLVLIRLNNNSFSGTIPS----WLFSLPLLEYVRLSDNQLS  373 (901)
Q Consensus       317 L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~  373 (901)
                      |++++|.+. .+|.  .+..+++|++|++++|.++. +|.    .+..+++|+.|++++|...
T Consensus        93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            666666554 3343  55666666666666666653 333    3666777777777766544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.34  E-value=6.6e-11  Score=130.82  Aligned_cols=329  Identities=13%  Similarity=0.091  Sum_probs=161.4

Q ss_pred             CCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCCCccccCC
Q 041976          257 VPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRL  335 (901)
Q Consensus       257 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l  335 (901)
                      -..+|.++++|+.+.+..+ ++.+-..+|.++.+|+.+++..+ ++..... +.++..|+.+.+..+ +......+|..+
T Consensus        63 g~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~  139 (394)
T 4fs7_A           63 GYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC  139 (394)
T ss_dssp             CTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred             HHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence            3456777888888888643 55455566777888888877654 3322222 556666666555433 222233344444


Q ss_pred             cCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceeccc
Q 041976          336 QNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDS  415 (901)
Q Consensus       336 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  415 (901)
                      ..+........  ......+|.++++|+.+.+..+.                       .......|.++.+|+.+.+..
T Consensus       140 ~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-----------------------~~I~~~~F~~c~~L~~i~l~~  194 (394)
T 4fs7_A          140 DFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-----------------------ETLHNGLFSGCGKLKSIKLPR  194 (394)
T ss_dssp             CCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-----------------------CEECTTTTTTCTTCCBCCCCT
T ss_pred             cccccccCccc--cccchhhhcccCCCcEEecCCcc-----------------------ceeccccccCCCCceEEEcCC
Confidence            33222221111  11222345555555555543321                       112233455566666666654


Q ss_pred             CcCCCccchhhhhhcCCCcEEEccCCccccccccccCCCCCCccEEecCCcCCCCCC-hhhccCCCCCEEeCCCCccccc
Q 041976          416 NNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFP-RFLRTQDELSYLDLSENKIDGQ  494 (901)
Q Consensus       416 n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~~~~L~~L~ls~n~l~~~  494 (901)
                      + ++.+. ...|.++..|+.+.+..+......   .......|+.+.+... ++.+. ..+..+..++.+.+..+... .
T Consensus       195 ~-~~~I~-~~~F~~~~~L~~i~~~~~~~~i~~---~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i  267 (394)
T 4fs7_A          195 N-LKIIR-DYCFAECILLENMEFPNSLYYLGD---FALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-I  267 (394)
T ss_dssp             T-CCEEC-TTTTTTCTTCCBCCCCTTCCEECT---TTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-E
T ss_pred             C-ceEeC-chhhccccccceeecCCCceEeeh---hhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-e
Confidence            4 22222 245566666665555443222111   0112233444433221 11121 13334444444444433211 1


Q ss_pred             CChhhhhcCCCCccEEEcCCCccCCcccCCCCCCceeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCC
Q 041976          495 IPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALD  574 (901)
Q Consensus       495 ~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  574 (901)
                      ....|  ..                                          +..++.+......+   ....+..+.+|+
T Consensus       268 ~~~~F--~~------------------------------------------~~~l~~~~~~~~~i---~~~~F~~~~~L~  300 (394)
T 4fs7_A          268 GGSLF--YN------------------------------------------CSGLKKVIYGSVIV---PEKTFYGCSSLT  300 (394)
T ss_dssp             CSCTT--TT------------------------------------------CTTCCEEEECSSEE---CTTTTTTCTTCC
T ss_pred             ecccc--cc------------------------------------------ccccceeccCceee---cccccccccccc
Confidence            11111  11                                          22233333332221   123445566666


Q ss_pred             EEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCC
Q 041976          575 VLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNI  654 (901)
Q Consensus       575 ~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n  654 (901)
                      .+.+.++ +...-..++..+. +|+.+++..+ ++.+...+|.+|.+|+.+++..+ ++.+...+|.+|++|+.+++..+
T Consensus       301 ~i~l~~~-i~~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          301 EVKLLDS-VKFIGEEAFESCT-SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             EEEECTT-CCEECTTTTTTCT-TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             ccccccc-cceechhhhcCCC-CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            6666544 3322233444444 6777777543 55566677888888888888766 66666677888888888887654


Q ss_pred             cCccCccccccCCCCCcEE
Q 041976          655 KINDAFPYWLGNLPELQVL  673 (901)
Q Consensus       655 ~l~~~~~~~l~~l~~L~~L  673 (901)
                       +. .+..+|.++++|+.+
T Consensus       377 -~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          377 -LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             -GG-GGGGGBCTTCEEEEE
T ss_pred             -CE-EhhheecCCCCCcEE
Confidence             22 224567777777654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.34  E-value=1.8e-12  Score=125.57  Aligned_cols=137  Identities=18%  Similarity=0.209  Sum_probs=98.9

Q ss_pred             ccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCc
Q 041976          566 SICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTK  645 (901)
Q Consensus       566 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  645 (901)
                      .+.++.+|++|++++|.++ .+|. +....++|+.|++++|.+++.  ..|..+++|++|++++|++++..+..|..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            3456677788888888877 4443 444445788888888888765  56788888888888888888665555688888


Q ss_pred             ccEEeCCCCcCccCcc-ccccCCCCCcEEEccCCcCcccCCCC--CCCCCCCCCcEEEcCCCccc
Q 041976          646 VEVLDIGNIKINDAFP-YWLGNLPELQVLVLRSNKFHGSVREF--EPKESFPKLRILDLSINNFS  707 (901)
Q Consensus       646 L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~--~~~~~l~~L~~L~Ls~n~l~  707 (901)
                      |++|++++|++....+ ..+..+++|++|++++|++... +..  ..+..+++|+.||+++|...
T Consensus        90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence            8888888888855332 2677888888888888888632 221  01256788889998888764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.33  E-value=6.5e-12  Score=120.65  Aligned_cols=105  Identities=24%  Similarity=0.295  Sum_probs=71.7

Q ss_pred             CCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCC
Q 041976          573 LDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIG  652 (901)
Q Consensus       573 L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  652 (901)
                      .+++++++|.++ .+|..+.   ++|++|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|+++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            456777777776 4665442   377777777777777767777777777777777777776666666777777777777


Q ss_pred             CCcCccCccccccCCCCCcEEEccCCcCc
Q 041976          653 NIKINDAFPYWLGNLPELQVLVLRSNKFH  681 (901)
Q Consensus       653 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~  681 (901)
                      +|++++..+..|..+++|++|+|++|++.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            77776666655666666666666665554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.32  E-value=4.1e-15  Score=147.50  Aligned_cols=127  Identities=23%  Similarity=0.240  Sum_probs=71.4

Q ss_pred             cccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCC
Q 041976          127 GFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPS  206 (901)
Q Consensus       127 ~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~  206 (901)
                      .++.+++|++|+|++|.+.+ +| .+..+              ++|++|++++|.++ .+|..+..+++|++|++++|  
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l--------------~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N--  103 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGM--------------ENLRILSLGRNLIK-KIENLDAVADTLEELWISYN--  103 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHH--------------TTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEE--
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccC--------------CCCCEEECCCCCcc-cccchhhcCCcCCEEECcCC--
Confidence            56666666666666666554 44 55555              56666666666555 34444444445555555544  


Q ss_pred             CCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCC-ccccCCCCCCEEECCCCcCCCCCCcc-
Q 041976          207 LAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVP-ASLGNLTQLTLLHLMHNNFSGHIPSS-  284 (901)
Q Consensus       207 l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~-  284 (901)
                                            .++.+| .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|.. 
T Consensus       104 ----------------------~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~  160 (198)
T 1ds9_A          104 ----------------------QIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN  160 (198)
T ss_dssp             ----------------------ECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTT
T ss_pred             ----------------------cCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccccc
Confidence                                  333333 35556666666666666553211 34566666666666666665544432 


Q ss_pred             ---------ccCCCCCCEEE
Q 041976          285 ---------LSNLVQLTYLD  295 (901)
Q Consensus       285 ---------l~~l~~L~~L~  295 (901)
                               +..+++|++||
T Consensus       161 ~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          161 ATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             THHHHHHHHHHHCSSCSEEC
T ss_pred             chHHHHHHHHHhCCCcEEEC
Confidence                     56677777765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.30  E-value=1.3e-11  Score=118.84  Aligned_cols=104  Identities=24%  Similarity=0.301  Sum_probs=73.1

Q ss_pred             CEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCC
Q 041976          574 DVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGN  653 (901)
Q Consensus       574 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~  653 (901)
                      +.+++++|.+. .+|..+.   ++|++|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            56777777775 6666543   3777888888887777777777777777777777777766666667777777777777


Q ss_pred             CcCccCccccccCCCCCcEEEccCCcCc
Q 041976          654 IKINDAFPYWLGNLPELQVLVLRSNKFH  681 (901)
Q Consensus       654 n~l~~~~~~~l~~l~~L~~L~L~~n~~~  681 (901)
                      |++.+..+..|..+++|++|+|++|++.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            7777665555666666666666666554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.25  E-value=3.5e-10  Score=125.01  Aligned_cols=196  Identities=13%  Similarity=0.055  Sum_probs=94.2

Q ss_pred             cccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCC
Q 041976          236 SIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVS  315 (901)
Q Consensus       236 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~  315 (901)
                      .+.++++|+.+.+..+. ...-..+|.++.+|+.+++..+ ++......|.++..|+.+.+..+... ..........|+
T Consensus       157 aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~  233 (394)
T 4fs7_A          157 AFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVK  233 (394)
T ss_dssp             TTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCC
T ss_pred             hhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCc
Confidence            45566666666665432 2223345556666666666544 33333445666666666655544322 111233445566


Q ss_pred             EEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCC
Q 041976          316 FFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQ  395 (901)
Q Consensus       316 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~  395 (901)
                      .+.+.... +......+..+..|+.+.+..+... .....+..+..++.+......+. ......+.+|+.+.+..+ ++
T Consensus       234 ~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~-~~~F~~~~~L~~i~l~~~-i~  309 (394)
T 4fs7_A          234 NIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP-EKTFYGCSSLTEVKLLDS-VK  309 (394)
T ss_dssp             EEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC-TTTTTTCTTCCEEEECTT-CC
T ss_pred             eEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec-cccccccccccccccccc-cc
Confidence            66654332 2223344556666666666554332 34445555666666555443221 111124455555555433 33


Q ss_pred             CCCchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEccC
Q 041976          396 GSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSH  440 (901)
Q Consensus       396 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~  440 (901)
                      .....+|.++.+|+.+++..+ ++.+.. .+|.++.+|+.+.+..
T Consensus       310 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~c~~L~~i~lp~  352 (394)
T 4fs7_A          310 FIGEEAFESCTSLVSIDLPYL-VEEIGK-RSFRGCTSLSNINFPL  352 (394)
T ss_dssp             EECTTTTTTCTTCCEECCCTT-CCEECT-TTTTTCTTCCEECCCT
T ss_pred             eechhhhcCCCCCCEEEeCCc-ccEEhH-HhccCCCCCCEEEECc
Confidence            333344555555555555432 333322 4455555555555443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.13  E-value=1.8e-12  Score=141.22  Aligned_cols=166  Identities=17%  Similarity=0.129  Sum_probs=85.9

Q ss_pred             CccCEEEccCCcccccCCccccC-----CCcccEEeCCCCcCccCcccccc-CCCCCcEEEccCCcCcccCCCCCC--C-
Q 041976          620 NWLRSLNLNNNELGGAIPQSLVN-----CTKVEVLDIGNIKINDAFPYWLG-NLPELQVLVLRSNKFHGSVREFEP--K-  690 (901)
Q Consensus       620 ~~L~~L~Ls~N~l~~~~~~~l~~-----l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~~~~~~~~~~~--~-  690 (901)
                      +.|+.|+|++|.++......+..     .++|++|++++|.+++.....+. .+++|++|+|++|.+.........  . 
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            46788888888887543333322     26788888888877654333332 345666777777666432111100  0 


Q ss_pred             CCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccc
Q 041976          691 ESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNG  770 (901)
Q Consensus       691 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~  770 (901)
                      ...++|++|+|++|.++..-...+...                                     ....+.|++|||++|.
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~-------------------------------------L~~~~~L~~L~Ls~N~  194 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEG-------------------------------------LAGNTSVTHLSLLHTG  194 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHH-------------------------------------HHTCSSCCEEECTTSS
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHH-------------------------------------HhcCCCcCEEeCCCCC
Confidence            123456666666665542111111000                                     0113456666666666


Q ss_pred             cccc----cchhhhccCCCCeEeCCCCcCCCC----CCccccCCCCCCEEeCCCCccCCC
Q 041976          771 FDGE----ISQVIGKLHSLRLLNLSHNHFTGQ----IPSSLGNLAKLESLDLSSNNVAGK  822 (901)
Q Consensus       771 l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~L~~L~~L~Ls~N~l~~~  822 (901)
                      +++.    ++..+...++|++|+|++|.|+..    ++..+...++|++|||++|.|+..
T Consensus       195 l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          195 LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            6542    244455556666666666666542    223333445666666666666543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.07  E-value=1.5e-10  Score=125.75  Aligned_cols=87  Identities=22%  Similarity=0.188  Sum_probs=67.9

Q ss_pred             ccceeEEEccc-cccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCee
Q 041976          758 LTVFTTIDFSS-NGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVL  836 (901)
Q Consensus       758 l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  836 (901)
                      +++|+.|+|++ |.|++..+..|+++++|++|+|++|+|++.+|..|++|++|+.|||++|+|++..+..|..++ |+.|
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            45678888885 888877777788888888888888888887777888888888888888888876666666665 8888


Q ss_pred             eCCCCcCcc
Q 041976          837 NLSHNRLDG  845 (901)
Q Consensus       837 ~Ls~N~l~g  845 (901)
                      +|++|++..
T Consensus       109 ~l~~N~~~c  117 (347)
T 2ifg_A          109 VLSGNPLHC  117 (347)
T ss_dssp             ECCSSCCCC
T ss_pred             EeeCCCccC
Confidence            888888764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.06  E-value=1e-08  Score=113.05  Aligned_cols=138  Identities=12%  Similarity=0.162  Sum_probs=92.5

Q ss_pred             cccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCc
Q 041976          559 FTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQ  638 (901)
Q Consensus       559 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  638 (901)
                      +.......|.++..|+.+.+.++... .-..++..+. .|+.+.+. +.++.+...+|.++.+|+.++|..+ ++.+...
T Consensus       253 v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~-~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~  328 (394)
T 4gt6_A          253 VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCP-ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDD  328 (394)
T ss_dssp             EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCT-TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred             ceEcccceeeecccccEEecccccce-ecCccccccc-ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHh
Confidence            33344567778888888888766543 3334455554 88888886 4566677788999999999999764 6667777


Q ss_pred             cccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCcc
Q 041976          639 SLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNF  706 (901)
Q Consensus       639 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l  706 (901)
                      +|.+|++|+.+.+..+ ++.+...+|.+|++|+.+++.++....     ..+....+|+.+.+..+.+
T Consensus       329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~-----~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          329 AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW-----NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH-----HTCBCCCCC----------
T ss_pred             HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh-----hhhhccCCCCEEEeCCCCE
Confidence            8999999999999754 667777888999999999998876432     1224456777777766543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.06  E-value=5.7e-12  Score=137.23  Aligned_cols=61  Identities=26%  Similarity=0.219  Sum_probs=25.6

Q ss_pred             CccCEEEccCCccccc----CCccccCCCcccEEeCCCCcCccCc----cccccCCCCCcEEEccCCcC
Q 041976          620 NWLRSLNLNNNELGGA----IPQSLVNCTKVEVLDIGNIKINDAF----PYWLGNLPELQVLVLRSNKF  680 (901)
Q Consensus       620 ~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~L~~n~~  680 (901)
                      ++|++|+|++|.++..    ++..+..+++|++|+|++|.+.+..    +..+...++|++|+|++|.+
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i  223 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA  223 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence            3444444444444321    1222234444444444444443321    22333344444555554444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.04  E-value=2e-08  Score=110.72  Aligned_cols=110  Identities=15%  Similarity=0.219  Sum_probs=67.4

Q ss_pred             ccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCC
Q 041976          564 IHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNC  643 (901)
Q Consensus       564 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l  643 (901)
                      ...|.+++.|+.+.+.. .++..-..+|..+. +|+.+++..+ ++.+...+|.+|.+|+.+.+..+ ++.+...+|.+|
T Consensus       281 ~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C  356 (394)
T 4gt6_A          281 TGAFMNCPALQDIEFSS-RITELPESVFAGCI-SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNC  356 (394)
T ss_dssp             TTTTTTCTTCCEEECCT-TCCEECTTTTTTCT-TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTC
T ss_pred             CcccccccccccccCCC-cccccCceeecCCC-CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCC
Confidence            34556667777777753 33322223444444 7888888654 55566778888888988888654 666667788889


Q ss_pred             CcccEEeCCCCcCccCccccccCCCCCcEEEccCCcC
Q 041976          644 TKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKF  680 (901)
Q Consensus       644 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~  680 (901)
                      ++|+.+++.++....   ..+..+..|+.+.+..+.+
T Consensus       357 ~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          357 TALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             CCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            999999888875432   3566778888887776653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.02  E-value=1.4e-09  Score=117.96  Aligned_cols=102  Identities=20%  Similarity=0.218  Sum_probs=59.3

Q ss_pred             EECCCC-cCcccCCcchhcCCCCccEEECCC-CcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCC
Q 041976          576 LDLSNN-RLNGTIPECIGNFSPSLSVLDLRN-NRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGN  653 (901)
Q Consensus       576 L~Ls~n-~l~~~~p~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~  653 (901)
                      ++.+++ .++ .+|. +..+. +|+.|+|++ |.++++.+..|..+++|++|+|++|+|++..|..|.++++|++|+|++
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEcCCCCCCC-ccCC-CCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            456665 555 4555 55444 566666664 666655555666666666666666666666666666666666666666


Q ss_pred             CcCccCccccccCCCCCcEEEccCCcCc
Q 041976          654 IKINDAFPYWLGNLPELQVLVLRSNKFH  681 (901)
Q Consensus       654 n~l~~~~~~~l~~l~~L~~L~L~~n~~~  681 (901)
                      |++++..+..+..++ |+.|+|.+|++.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            666555444444433 555555555543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.72  E-value=7.2e-09  Score=111.58  Aligned_cols=40  Identities=23%  Similarity=0.432  Sum_probs=21.3

Q ss_pred             ccceeEEEccccccccc----cchhhhccCCCCeEeCCCCcCCC
Q 041976          758 LTVFTTIDFSSNGFDGE----ISQVIGKLHSLRLLNLSHNHFTG  797 (901)
Q Consensus       758 l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~  797 (901)
                      ++.|++|||+.|.+++.    ++..+..+++|+.|+|++|.++.
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            34556666666666543    22333445566666666665553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.68  E-value=1.8e-06  Score=94.62  Aligned_cols=37  Identities=5%  Similarity=0.126  Sum_probs=19.6

Q ss_pred             ccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccC
Q 041976          261 LGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSS  298 (901)
Q Consensus       261 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  298 (901)
                      +....+|+.+.+.. .++.+-..+|.++.+|+.+.+..
T Consensus        42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~   78 (379)
T 4h09_A           42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS   78 (379)
T ss_dssp             GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT
T ss_pred             cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC
Confidence            33445566666653 23333444566666666666643

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.58  E-value=2.6e-08  Score=107.26  Aligned_cols=142  Identities=17%  Similarity=0.273  Sum_probs=74.6

Q ss_pred             CChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhh--cccccCceeccc--CcCCCccch---
Q 041976          352 IPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIF--ELVNLTDLQLDS--NNFSGIAEP---  424 (901)
Q Consensus       352 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~--n~l~~~~~~---  424 (901)
                      +...+..+|+|+.|++++|.-.. .+....++|+.|++..+.++......+.  .+++|+.|+|+.  +...+....   
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l~-l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNLS-IGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTCB-CCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             HHHHHhcCCCCcEEEEeCCCCce-eccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence            34555677778888887763111 1223466777777777766544333443  567777777743  111111000   


Q ss_pred             -hhh--hhcCCCcEEEccCCccccccccccC--CCCCCccEEecCCcCCCC-----CChhhccCCCCCEEeCCCCccccc
Q 041976          425 -YMF--AKLIKLKYLYLSHNSLSLGNTFKID--SPFPKFSYLSLSACNISA-----FPRFLRTQDELSYLDLSENKIDGQ  494 (901)
Q Consensus       425 -~~l--~~l~~L~~L~L~~n~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~-----lp~~l~~~~~L~~L~ls~n~l~~~  494 (901)
                       ..+  ..+++|++|++.+|.+.......+.  ..+++|++|+++.|.++.     ++..+..+++|+.|++++|.++..
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence             011  2356777777776665532211111  135566666666665542     233334556666666666665543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.51  E-value=5.3e-06  Score=90.79  Aligned_cols=108  Identities=14%  Similarity=0.218  Sum_probs=54.6

Q ss_pred             cccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCC
Q 041976          565 HSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCT  644 (901)
Q Consensus       565 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  644 (901)
                      ..+.++..|+.+.+..+ ++..-...+..+. +|+.+.+..+ +..+....|.++.+|+.+.+.++.++.+...+|.+|.
T Consensus       234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~-~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~  310 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCT-ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV  310 (379)
T ss_dssp             TTTTTCSSCCEEEECTT-CCEECTTTTTTCT-TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred             ccccCCccceEEEcCCC-ccEeCccccceee-hhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence            34445555555555443 2212222233333 5555555432 3334445566666666666666655555555666666


Q ss_pred             cccEEeCCCCcCccCccccccCCCCCcEEEcc
Q 041976          645 KVEVLDIGNIKINDAFPYWLGNLPELQVLVLR  676 (901)
Q Consensus       645 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~  676 (901)
                      +|+.+.+..+ ++.+...+|.++.+|+.+.+.
T Consensus       311 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          311 KLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            6666666533 444444555555555555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.26  E-value=3.6e-07  Score=92.96  Aligned_cols=67  Identities=27%  Similarity=0.348  Sum_probs=43.7

Q ss_pred             hccCCCCeEeCCCCcCCC--CCCccccCCCCCCEEeCCCCccCCCCCcCCcCCC--CCCeeeCCCCcCccCCC
Q 041976          780 GKLHSLRLLNLSHNHFTG--QIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLT--SLSVLNLSHNRLDGPIP  848 (901)
Q Consensus       780 ~~l~~L~~L~Ls~N~l~~--~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~g~iP  848 (901)
                      .++++|++|+|++|+|++  .+|..++.+++|+.|+|++|+|++.  +.+..+.  +|++|+|++|++.+.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            456677777777777776  3345566677777777777777654  3333333  67777777777776665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.26  E-value=2.7e-07  Score=89.46  Aligned_cols=86  Identities=16%  Similarity=0.251  Sum_probs=47.4

Q ss_pred             cceeEEEccccccccc----cchhhhccCCCCeEeCCCCcCCCC----CCccccCCCCCCEEeC--CCCccCCC----CC
Q 041976          759 TVFTTIDFSSNGFDGE----ISQVIGKLHSLRLLNLSHNHFTGQ----IPSSLGNLAKLESLDL--SSNNVAGK----IP  824 (901)
Q Consensus       759 ~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~L~~L~~L~L--s~N~l~~~----~p  824 (901)
                      +.|++|+|++|.+...    +...+...++|++|+|++|.|+..    +...+...++|++|+|  ++|.|...    +.
T Consensus        65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~  144 (185)
T 1io0_A           65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA  144 (185)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred             CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence            3455555555555432    233344455666666666666542    2344555566666666  66666543    22


Q ss_pred             cCCcCCCCCCeeeCCCCcCc
Q 041976          825 KPLTSLTSLSVLNLSHNRLD  844 (901)
Q Consensus       825 ~~l~~l~~L~~L~Ls~N~l~  844 (901)
                      +.+...++|++|+|++|.+.
T Consensus       145 ~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          145 NMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCcCEEeccCCCCC
Confidence            33444566777777777654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.24  E-value=7.4e-07  Score=90.65  Aligned_cols=79  Identities=24%  Similarity=0.379  Sum_probs=67.0

Q ss_pred             hccceeEEEcccccccc--ccchhhhccCCCCeEeCCCCcCCCCCCccccCCC--CCCEEeCCCCccCCCCCc-------
Q 041976          757 ILTVFTTIDFSSNGFDG--EISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLA--KLESLDLSSNNVAGKIPK-------  825 (901)
Q Consensus       757 ~l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~--~L~~L~Ls~N~l~~~~p~-------  825 (901)
                      .++.|++|+|++|+|++  .+|..++.+++|+.|+|++|+|++.  ..+..+.  +|++|+|++|.+.+.+|.       
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            36889999999999998  5678889999999999999999976  3455555  999999999999987763       


Q ss_pred             CCcCCCCCCeee
Q 041976          826 PLTSLTSLSVLN  837 (901)
Q Consensus       826 ~l~~l~~L~~L~  837 (901)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            467789999886

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.10  E-value=4e-07  Score=88.20  Aligned_cols=93  Identities=18%  Similarity=0.228  Sum_probs=45.0

Q ss_pred             ccccccCCCCCEEECCCC-cCccc----CCcchhcCCCCccEEECCCCcccccC----CcCccCCCccCEEEccCCcccc
Q 041976          564 IHSICDIIALDVLDLSNN-RLNGT----IPECIGNFSPSLSVLDLRNNRLNGSI----PGTFAESNWLRSLNLNNNELGG  634 (901)
Q Consensus       564 ~~~~~~l~~L~~L~Ls~n-~l~~~----~p~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~  634 (901)
                      ...+...+.|++|++++| .+...    +...+.... +|++|+|++|.+....    ...+...++|++|+|++|.|+.
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~-~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCC-CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            344556677777777777 66532    112222222 5666666666654321    1223333445555555555543


Q ss_pred             c----CCccccCCCcccEEeC--CCCcCc
Q 041976          635 A----IPQSLVNCTKVEVLDI--GNIKIN  657 (901)
Q Consensus       635 ~----~~~~l~~l~~L~~L~l--~~n~l~  657 (901)
                      .    +...+...++|++|++  ++|.+.
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence            2    2233444444555555  444443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.87  E-value=1.7e-06  Score=81.43  Aligned_cols=91  Identities=16%  Similarity=0.240  Sum_probs=60.6

Q ss_pred             cCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCc-CCCCCCcccccccccccchhhcccCCCCccEEEcCCCc-CCCC
Q 041976          108 HLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSN-INCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCI-LQGN  185 (901)
Q Consensus       108 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~-~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~-~~~~  185 (901)
                      .|++||++++.++...+ ..+.++++|++|+|++|. +++.--..++.+          .+.+++|++|++++|. +++.
T Consensus        62 ~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~----------~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQL----------ENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             CEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTC----------HHHHHHCCEEEEESCTTCCHH
T ss_pred             eEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhc----------ccccCCCCEEEcCCCCcCCHH
Confidence            57777777777665533 346788888888888885 443222222221          0012478999999984 7776


Q ss_pred             CccccCCCCCCCEEeCCCCCCCCc
Q 041976          186 FPINIFHLPNPQMIRLSQNPSLAG  209 (901)
Q Consensus       186 ~p~~l~~l~~L~~L~L~~n~~l~~  209 (901)
                      --..+.++++|++|++++|+.++.
T Consensus       131 Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          131 GIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             HHHHHhcCCCCCEEECCCCCCCCc
Confidence            667788899999999999866553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.78  E-value=5.1e-06  Score=78.10  Aligned_cols=83  Identities=11%  Similarity=0.106  Sum_probs=46.5

Q ss_pred             CccEEECCCCcccccCCcCccCCCccCEEEccCCc-ccccCCccccCC----CcccEEeCCCCc-CccCccccccCCCCC
Q 041976          597 SLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNE-LGGAIPQSLVNC----TKVEVLDIGNIK-INDAFPYWLGNLPEL  670 (901)
Q Consensus       597 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l----~~L~~L~l~~n~-l~~~~~~~l~~l~~L  670 (901)
                      .|+.||+++|.++...-..+..+++|++|+|++|. ++...-..+..+    ++|++|+|++|. +++..-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            56666776666655444445666667777777664 543333334332    356666666653 555444445555555


Q ss_pred             cEEEccCCc
Q 041976          671 QVLVLRSNK  679 (901)
Q Consensus       671 ~~L~L~~n~  679 (901)
                      ++|++++|+
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.04  E-value=0.001  Score=59.55  Aligned_cols=56  Identities=23%  Similarity=0.364  Sum_probs=29.4

Q ss_pred             eEeCCCCcCC-CCCCccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCc
Q 041976          787 LLNLSHNHFT-GQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLD  844 (901)
Q Consensus       787 ~L~Ls~N~l~-~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  844 (901)
                      .++.+++.++ ..+|..+.  .+|+.|||++|+|+.+.+..|..+++|++|+|++|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4555555554 23343332  24555666666665555555555566666666666553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.74  E-value=0.00056  Score=65.49  Aligned_cols=85  Identities=14%  Similarity=0.201  Sum_probs=61.8

Q ss_pred             cceeEEEccccccccc----cchhhhccCCCCeEeCCCCcCCCC----CCccccCCCCCCEEeCCCCcc---CC----CC
Q 041976          759 TVFTTIDFSSNGFDGE----ISQVIGKLHSLRLLNLSHNHFTGQ----IPSSLGNLAKLESLDLSSNNV---AG----KI  823 (901)
Q Consensus       759 ~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~L~~L~~L~Ls~N~l---~~----~~  823 (901)
                      +.|+.|+|++|+|...    +.+.+..-+.|++|+|++|.|+..    +-+.+..-+.|++|+|++|..   ..    .+
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i  149 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM  149 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence            5688999999998753    455666778999999999999853    234455567899999987633   32    13


Q ss_pred             CcCCcCCCCCCeeeCCCCcC
Q 041976          824 PKPLTSLTSLSVLNLSHNRL  843 (901)
Q Consensus       824 p~~l~~l~~L~~L~Ls~N~l  843 (901)
                      .+.+..-+.|+.|+++.|.+
T Consensus       150 a~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          150 MMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhCCCcCeEeccCCCc
Confidence            34566668899999988764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.47  E-value=0.0033  Score=56.12  Aligned_cols=58  Identities=22%  Similarity=0.276  Sum_probs=48.3

Q ss_pred             eEEEccccccc-cccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCC
Q 041976          762 TTIDFSSNGFD-GEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAG  821 (901)
Q Consensus       762 ~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~  821 (901)
                      ..++.++++++ ..+|..+  -.+|++|+|++|+|+.+.+..|..+++|+.|+|++|.+..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            36888999987 3555443  3479999999999999888899999999999999998863

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.35  E-value=0.001  Score=63.63  Aligned_cols=84  Identities=15%  Similarity=0.141  Sum_probs=43.8

Q ss_pred             CccEEECCCCcccccCCc----CccCCCccCEEEccCCccccc----CCccccCCCcccEEeCCCC---cCccC----cc
Q 041976          597 SLSVLDLRNNRLNGSIPG----TFAESNWLRSLNLNNNELGGA----IPQSLVNCTKVEVLDIGNI---KINDA----FP  661 (901)
Q Consensus       597 ~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~l~~n---~l~~~----~~  661 (901)
                      .|+.|+|++|.|......    .+..-+.|++|+|++|.|...    +.+.+..-+.|++|+|++|   .+...    +.
T Consensus        71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia  150 (197)
T 1pgv_A           71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM  150 (197)
T ss_dssp             CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred             CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH
Confidence            555555555555432222    222334566666666666532    2234455566777777654   23321    23


Q ss_pred             ccccCCCCCcEEEccCCcC
Q 041976          662 YWLGNLPELQVLVLRSNKF  680 (901)
Q Consensus       662 ~~l~~l~~L~~L~L~~n~~  680 (901)
                      ..+..-+.|+.|+++.|.+
T Consensus       151 ~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          151 MAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhCCCcCeEeccCCCc
Confidence            3344556777777776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	901
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-27
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-11
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score =  110 bits (276), Expect = 3e-27
 Identities = 70/320 (21%), Positives = 119/320 (37%), Gaps = 27/320 (8%)

Query: 27  CPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKDTNCC--SWDGVTCDMATG--N 82
           C  +   AL+Q K+       ++           SW   T+CC  +W GV CD  T    
Sbjct: 3   CNPQDKQALLQIKK--DLGNPTTLS---------SWLPTTDCCNRTWLGVLCDTDTQTYR 51

Query: 83  VISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDS 142
           V +LDLS   L    P  +SL +L +L  L +   +     I    ++   L +  ++ +
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 143 NINCKIPYEISFLKMSTVVLDSLKNLS----------SSLTSLSLSDCILQGNFPINIFH 192
           N++  IP  +S +K    +  S   LS           +L  ++     + G  P +   
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 193 LPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQ 252
                         L GK P       + ++D+S          +       + +     
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 253 FVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLT 312
            +      +G    L  L L +N   G +P  L+ L  L  L++S N+  GEIP   NL 
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

Query: 313 QVSFFDLSNNQL--AGPIPS 330
           +      +NN+     P+P+
Sbjct: 292 RFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 69.4 bits (168), Expect = 3e-13
 Identities = 62/299 (20%), Positives = 94/299 (31%), Gaps = 46/299 (15%)

Query: 576 LDLSNNRLNG--TIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELG 633
           LDLS   L     IP  + N      +     N L G IP   A+   L  L + +  + 
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 634 GAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESF 693
           GAIP  L     +  LD     ++   P  + +LP L  +    N+  G++ +     S+
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD-----SY 169

Query: 694 PKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIE 753
                L  S+      L  +       +     D  +    G+           +   + 
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 754 MQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLD 813
              +      +  S N                  L+L +N   G +P  L  L  L SL+
Sbjct: 230 KNSLAFDLGKVGLSKNL---------------NGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 814 LSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPL 872
                                   +S N L G IP G     F   +Y  N  LCG PL
Sbjct: 275 ------------------------VSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 66.3 bits (160), Expect = 3e-12
 Identities = 52/259 (20%), Positives = 79/259 (30%), Gaps = 31/259 (11%)

Query: 384 LQNIYLSNNRLQG--SIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHN 441
           + N+ LS   L     IPSS+  L  L  L +   N      P   AKL +L YLY++H 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 442 SLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISE 501
           ++S      +       +            P  + +   L  +    N+I G IP     
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 502 IGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRS-------------------------- 535
             K   S     +    K+              S                          
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 536 -NLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNF 594
                        +L  L + NN+  G +   +  +  L  L++S N L G IP+  GN 
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNL 290

Query: 595 SPSLSVLDLRNNRLNGSIP 613
                V    NN+     P
Sbjct: 291 Q-RFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 62.5 bits (150), Expect = 5e-11
 Identities = 57/285 (20%), Positives = 108/285 (37%), Gaps = 16/285 (5%)

Query: 274 HNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIP---DIFNLTQVSFFDLSNN-QLAGPIP 329
           +  + G +  + +   ++  LDLS  +     P    + NL  ++F  +     L GPIP
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 330 SHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDE--FPSKSLQNI 387
              ++L  L  + + + + SG IP +L  +  L  +  S N LSG +        +L  I
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 388 YLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGN 447
               NR+ G+IP S      L      S N   +                    ++  G+
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRN--RLTGKIPPTFANLNLAFVDLSRNMLEGD 212

Query: 448 TFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSL 507
              +         + L+  +++     +     L+ LDL  N+I G +P  ++++    L
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL--KFL 270

Query: 508 SYVNLSHNFITKMKQIP----WKNLGYLDLRSNLLQGPLPVPPSS 548
             +N+S N +    +IP     +        +N      P+P  +
Sbjct: 271 HSLNVSFNNLCG--EIPQGGNLQRFDVSAYANNKCLCGSPLPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.4 bits (142), Expect = 6e-10
 Identities = 46/280 (16%), Positives = 95/280 (33%), Gaps = 23/280 (8%)

Query: 549 LRVLLISNNQFTG--EIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNN 606
           +  L +S         I  S+ ++  L+ L +                   L  L + + 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 607 RLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGN 666
            ++G+IP   ++   L +L+ + N L G +P S+ +   +  +     +I+ A P   G+
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 667 LPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSA 726
             +L   +  S                       L+      +          +   +  
Sbjct: 172 FSKLFTSMTISRN--------------------RLTGKIPPTFANLNLAFVDLSRNMLEG 211

Query: 727 DEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLR 786
           D   L    +   +  +       ++    +      +D  +N   G + Q + +L  L 
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 787 LLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKP 826
            LN+S N+  G+IP   GNL + +    ++N      P P
Sbjct: 272 SLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLP 310

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 84.3 bits (207), Expect = 8e-18
 Identities = 63/373 (16%), Positives = 119/373 (31%), Gaps = 31/373 (8%)

Query: 484 LDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPW-KNLGYLDLRSNLLQGPL 542
             L +  +   +    +++  D ++ +      I  +  + +  NL  ++  +N L    
Sbjct: 27  TVLGKTNVTDTVS--QTDL--DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT 82

Query: 543 PVPP-SSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVL 601
           P+   + L  +L++NNQ       +    +    L  +       +          LS  
Sbjct: 83  PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 142

Query: 602 DLRNNRLNGSIPGTFAE------------SNWLRSLNLNNNELGGAIPQSLVNCTKVEVL 649
            + +      +                  +N      L+ +    +    L   T +E L
Sbjct: 143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 202

Query: 650 DIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGY 709
              N +I+D  P     L  L  L L  N+            S   L  LDL+ N  S  
Sbjct: 203 IATNNQISDITPLG--ILTNLDELSLNGNQLKD----IGTLASLTNLTDLDLANNQISNL 256

Query: 710 LPERFLENLNAMR-NVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSS 768
            P   L  L  ++   +         G     +  +   +  +I     L   T +    
Sbjct: 257 APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 316

Query: 769 NGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLT 828
           N         +  L  L+ L  ++N  +    SSL NL  +  L    N ++     PL 
Sbjct: 317 NNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLT--PLA 370

Query: 829 SLTSLSVLNLSHN 841
           +LT ++ L L+  
Sbjct: 371 NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.6 bits (174), Expect = 9e-14
 Identities = 68/332 (20%), Positives = 115/332 (34%), Gaps = 36/332 (10%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSD 141
           N+  ++ S + L    P    L +L  L  + +++N        +  +    LT F+   
Sbjct: 67  NLTQINFSNNQLTDITP----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 122

Query: 142 SNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRL 201
           ++I+             +    S  +  S LTSL       Q      + +L   + + +
Sbjct: 123 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 182

Query: 202 SQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASL 261
           S N        A      +E L  +    S++        L   L L  +Q       +L
Sbjct: 183 SSNKVSDISVLAKLT--NLESLIATNNQISDITPLGILTNLD-ELSLNGNQLKDI--GTL 237

Query: 262 GNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIP--------------- 306
            +LT LT L L +N  S   P  LS L +LT L L +N      P               
Sbjct: 238 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN 295

Query: 307 ------DIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLP 360
                  I NL  +++  L  N ++   P   S L  L  +   NN  S    S L +L 
Sbjct: 296 QLEDISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFANNKVSD--VSSLANLT 351

Query: 361 LLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNN 392
            + ++    NQ+S          +  + L++ 
Sbjct: 352 NINWLSAGHNQISDLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.2 bits (173), Expect = 1e-13
 Identities = 70/385 (18%), Positives = 125/385 (32%), Gaps = 48/385 (12%)

Query: 133 NLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFH 192
            +T        I                 +D ++ L++ LT ++ S+  L    P     
Sbjct: 45  QVTTLQADRLGIKS---------------IDGVEYLNN-LTQINFSNNQLTDITP----- 83

Query: 193 LPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQ 252
                   L     L      NN  + I  L            +     +     L    
Sbjct: 84  --------LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135

Query: 253 FVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSN--SFFGEIPDIFN 310
            +     ++ +++ L+ L  +     G+  + L  L  LT L+      +   +I  +  
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195

Query: 311 LTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDN 370
           LT +     +NNQ++   P       NL  + LN N         L SL  L  + L++N
Sbjct: 196 LTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 251

Query: 371 QLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKL 430
           Q+S          L  + L  N++    P     L  LT L     N + + +    + L
Sbjct: 252 QISNLAPLSGLTKLTELKLGANQISNISP-----LAGLTALTNLELNENQLEDISPISNL 306

Query: 431 IKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENK 490
             L YL L  N++S  +     S   K   L  +   +S     L     +++L    N+
Sbjct: 307 KNLTYLTLYFNNISDISPV---SSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQ 362

Query: 491 IDGQIPSWISEIGKDSLSYVNLSHN 515
           I    P          ++ + L+  
Sbjct: 363 ISDLTPLA----NLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.0 bits (201), Expect = 2e-17
 Identities = 58/319 (18%), Positives = 104/319 (32%), Gaps = 34/319 (10%)

Query: 223 LDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIP 282
           +  S+    ++P  +        L L  ++          NL  L  L L++N  S   P
Sbjct: 15  VQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 72

Query: 283 SSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIR 342
            + + LV+L  L LS N        +    Q      +          +G     +V + 
Sbjct: 73  GAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELG 132

Query: 343 LNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSI 402
            N    SG        +  L Y+R++D  ++  I +    SL  ++L  N++     +S+
Sbjct: 133 TNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAASL 191

Query: 403 FELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLS 462
             L NL  L L  N+ S +    +                             P    L 
Sbjct: 192 KGLNNLAKLGLSFNSISAVDNGSLA--------------------------NTPHLRELH 225

Query: 463 LSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKD----SLSYVNLSHNFIT 518
           L+   +   P  L     +  + L  N I     +     G +    S S V+L  N + 
Sbjct: 226 LNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

Query: 519 KMKQIPWKNLGYLDLRSNL 537
              +I       + +R+ +
Sbjct: 286 -YWEIQPSTFRCVYVRAAV 303

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.0 bits (175), Expect = 4e-14
 Identities = 66/347 (19%), Positives = 101/347 (29%), Gaps = 53/347 (15%)

Query: 69  CSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGF 128
           C    V C          DL    +  ++P +           L+L +N          F
Sbjct: 10  CHLRVVQCS---------DLGLEKVPKDLPPD--------TALLDLQNNKIT-EIKDGDF 51

Query: 129 SRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPI 188
              +NL    L ++ I+   P   + L                L  L LS   L+     
Sbjct: 52  KNLKNLHTLILINNKISKISPGAFAPL--------------VKLERLYLSKNQLKELPEK 97

Query: 189 NIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLML 248
               L   ++            F   N    +E       S      +   +K L  + +
Sbjct: 98  MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 157

Query: 249 GYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDI 308
             +          G    LT LHL  N  +    +SL  L  L  L LS NS        
Sbjct: 158 ADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 214

Query: 309 FNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLS 368
              T        NN     +P   +  + + ++ L+NN+ S  I S  F  P     +  
Sbjct: 215 LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKA- 272

Query: 369 DNQLSGHIDEFPSKSLQNIYLSNNRLQ-GSIPSSIFELV-NLTDLQL 413
                         S   + L +N +Q   I  S F  V     +QL
Sbjct: 273 --------------SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.8 bits (172), Expect = 1e-13
 Identities = 65/302 (21%), Positives = 108/302 (35%), Gaps = 34/302 (11%)

Query: 362 LEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGI 421
           L  V+ SD  L     + P      + L NN++          L NL  L L +N  S I
Sbjct: 12  LRVVQCSDLGLEKVPKDLPP-DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 422 AEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDEL 481
             P  FA L+KL+ LYLS N L                             +  +T  EL
Sbjct: 71  -SPGAFAPLVKLERLYLSKNQLK------------------------ELPEKMPKTLQEL 105

Query: 482 SYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGP 541
              +    K+   + + ++++    L    L  + I        K L Y+ +    +   
Sbjct: 106 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 165

Query: 542 LPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVL 601
               P SL  L +  N+ T     S+  +  L  L LS N ++      +   +P L  L
Sbjct: 166 PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL-ANTPHLREL 224

Query: 602 DLRNNRLNGSIPGTFAESNWLRSLNLNNNELGG------AIPQSLVNCTKVEVLDIGNIK 655
            L NN+L   +PG  A+  +++ + L+NN +          P           + + +  
Sbjct: 225 HLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283

Query: 656 IN 657
           + 
Sbjct: 284 VQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.9 bits (167), Expect = 4e-13
 Identities = 40/298 (13%), Positives = 80/298 (26%), Gaps = 43/298 (14%)

Query: 546 PSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRN 605
           P    +L + NN+ T        ++  L  L L NN+++   P         L  L L  
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL-VKLERLYLSK 88

Query: 606 NRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLG 665
           N+L             LR       ++  ++   L     VE L    +K +        
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQ 147

Query: 666 NLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVS 725
            + +L  + +             P+   P L  L L  N  +                  
Sbjct: 148 GMKKLSYIRIADTNI-----TTIPQGLPPSLTELHLDGNKITKVDAASL----------- 191

Query: 726 ADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSL 785
                 + L           ++   +            +  ++N         +     +
Sbjct: 192 ------KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKYI 244

Query: 786 RLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRL 843
           +++ L +N+ +    +                      P   T   S S ++L  N +
Sbjct: 245 QVVYLHNNNISAIGSNDFCP------------------PGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.3 bits (155), Expect = 1e-11
 Identities = 49/299 (16%), Positives = 97/299 (32%), Gaps = 38/299 (12%)

Query: 573 LDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNEL 632
           L V+  S+  L   +P+   +  P  ++LDL+NN++     G F     L +L L NN++
Sbjct: 12  LRVVQCSDLGLE-KVPK---DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 633 GGAIPQSLVNCTKVEVLDIGNIKI---------------------NDAFPYWLGNLPELQ 671
               P +     K+E L +   ++                               L ++ 
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 672 VLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERF--LENLNAMRN--VSAD 727
           V+ L +N    S  E    +   KL  + ++  N +         L  L+   N     D
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVD 187

Query: 728 EGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRL 787
              L+ L           ++   +            +  ++N         +     +++
Sbjct: 188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQV 246

Query: 788 LNLSHNHFTG------QIPSSLGNLAKLESLDLSSNNVAGKIPKPLT--SLTSLSVLNL 838
           + L +N+ +         P      A    + L SN V     +P T   +   + + L
Sbjct: 247 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.1 bits (139), Expect = 1e-09
 Identities = 59/277 (21%), Positives = 91/277 (32%), Gaps = 26/277 (9%)

Query: 588 PECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVE 647
           P C       L V+   +  L   +P           L+L NN++         N   + 
Sbjct: 2   PVCPFRCQCHLRVVQCSDLGLE-KVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLH 58

Query: 648 VLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFS 707
            L + N KI+   P     L +L+ L L  N+         P++    L+ L +  N  +
Sbjct: 59  TLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-----PEKMPKTLQELRVHENEIT 113

Query: 708 GYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFS 767
             + +     LN M  V      L+  G E      +  L    I    I T+       
Sbjct: 114 K-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ----- 167

Query: 768 SNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPL 827
                       G   SL  L+L  N  T    +SL  L  L  L LS N+++      L
Sbjct: 168 ------------GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 215

Query: 828 TSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGN 864
            +   L  L+L++N+L             Q      N
Sbjct: 216 ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 252

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 7e-07
 Identities = 20/85 (23%), Positives = 29/85 (34%)

Query: 784 SLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRL 843
              LL+L +N  T        NL  L +L L +N ++   P     L  L  L LS N+L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 844 DGPIPHGPQFNTFQEDSYIGNLGLC 868
                  P+              + 
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVR 116

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.5 bits (101), Expect = 6e-05
 Identities = 22/110 (20%), Positives = 34/110 (30%)

Query: 762 TTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAG 821
             +D  +N            L +L  L L +N  +   P +   L KLE L LS N +  
Sbjct: 34  ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 93

Query: 822 KIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFP 871
              K   +L  L V      ++   + +G       E             
Sbjct: 94  LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 143

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (177), Expect = 1e-14
 Identities = 55/258 (21%), Positives = 89/258 (34%), Gaps = 7/258 (2%)

Query: 167 NLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVS 226
            + ++   + L    +      +     N  ++ L  N        A    + +E LD+S
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 227 ETSFSEL--PDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSS 284
           + +      P +   L  L  L L         P     L  L  L+L  N        +
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 285 LSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRL 343
             +L  LT+L L  N         F  L  +    L  N++A   P     L  L+ + L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 344 NNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFP-SKSLQNIYLSNNRLQGSIPSSI 402
             N+ S      L  L  L+Y+RL+DN         P    LQ    S++ +  S+P   
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR- 267

Query: 403 FELVNLTDLQLDSNNFSG 420
             L      +L +N+  G
Sbjct: 268 --LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 8e-11
 Identities = 51/277 (18%), Positives = 88/277 (31%), Gaps = 16/277 (5%)

Query: 365 VRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEP 424
                  L       P+ + Q I+L  NR+     +S     NLT L L SN  + I   
Sbjct: 16  TSCPQQGLQAVPVGIPA-ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74

Query: 425 YMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPR-FLRTQDELSY 483
                 +  +     +  L   +         +   L L  C +        R    L Y
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATF-HGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133

Query: 484 LDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLP 543
           L L +N +              +L+++ L  N I+ + +  ++ L  LD           
Sbjct: 134 LYLQDNALQALPDDTF--RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 544 VPPSSLRVL------LISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPS 597
           V P + R L       +  N  +     ++  + AL  L L++N                
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAW 249

Query: 598 LSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGG 634
           L      ++ +  S+P   A  +      L  N+L G
Sbjct: 250 LQKFRGSSSEVPCSLPQRLAGRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 1e-10
 Identities = 50/286 (17%), Positives = 83/286 (29%), Gaps = 18/286 (6%)

Query: 568 CDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNL 627
           C              L   +P        +   + L  NR++     +F     L  L L
Sbjct: 8   CYNEPKVTTSCPQQGLQ-AVPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWL 63

Query: 628 NNNELGGAIPQSLVNCTKVEV-LDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVRE 686
           ++N L      +      +E      N ++    P     L  L  L L           
Sbjct: 64  HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG 123

Query: 687 FEPKESFPKLRILDLSINNFSGYLPERF-----LENLNAMRN--VSADEGKLRYLGEEYY 739
                    L+ L L  N       + F     L +L    N   S  E   R L     
Sbjct: 124 LFRG--LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 740 QDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQI 799
                  +        + L    T+   +N      ++ +  L +L+ L L+ N +    
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241

Query: 800 PSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDG 845
             +    A L+    SS+ V   +P+    L    +  L+ N L G
Sbjct: 242 R-ARPLWAWLQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 1e-10
 Identities = 57/267 (21%), Positives = 91/267 (34%), Gaps = 24/267 (8%)

Query: 96  NIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFL 155
            IP  +        Q + L  N       ++ F   RNLT   L  + +        + L
Sbjct: 29  GIPAAS--------QRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGL 79

Query: 156 KMSTVVLDSLKNLSS-----------SLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQN 204
            +   +  S                  L +L L  C LQ   P     L   Q + L  N
Sbjct: 80  ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139

Query: 205 PSLAGKFPANNWTSPIEYLDVSETSFSELP-DSIGNLKLLGRLMLGYSQFVGPVPASLGN 263
              A           + +L +     S +P  +   L  L RL+L  ++     P +  +
Sbjct: 140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199

Query: 264 LTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQ 323
           L +L  L+L  NN S     +L+ L  L YL L+ N +  +         +  F  S+++
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSE 259

Query: 324 LAGPIPSHGSRLQNLVLIRLNNNSFSG 350
           +   +P     L    L RL  N   G
Sbjct: 260 VPCSLPQR---LAGRDLKRLAANDLQG 283

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (153), Expect = 2e-11
 Identities = 38/273 (13%), Positives = 90/273 (32%), Gaps = 15/273 (5%)

Query: 576 LDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNEL-GG 634
           LDL+   L+  +   +   S  +       + ++  +   F+    ++ ++L+N+ +   
Sbjct: 5   LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61

Query: 635 AIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFP 694
            +   L  C+K++ L +  ++++D     L     L  L L                S  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 695 KLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEM 754
           +L  L+LS          +      +      +    R   ++    +           +
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST----------LV 171

Query: 755 QKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSH-NHFTGQIPSSLGNLAKLESLD 813
           ++   +       S     +  Q   +L+ L+ L+LS       +    LG +  L++L 
Sbjct: 172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 231

Query: 814 LSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGP 846
           +      G +     +L  L +       +  P
Sbjct: 232 VFGIVPDGTLQLLKEALPHLQINCSHFTTIARP 264

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 8e-06
 Identities = 47/286 (16%), Positives = 90/286 (31%), Gaps = 32/286 (11%)

Query: 292 TYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGT 351
             LDL+  +   ++        V  F    + +  P+  H S  + +  + L+N+    +
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61

Query: 352 IPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDL 411
               + S                         LQN+ L   RL   I +++ +  NL  L
Sbjct: 62  TLHGILS---------------------QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 100

Query: 412 -QLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSL----GNTFKIDSPFPKFSYLSLSAC 466
                + FS  A   + +   +L  L LS                 S       LS    
Sbjct: 101 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 160

Query: 467 NISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDS-LSYVNLSHNFITKMKQIPW 525
           N+         +   + + L  +           E  + + L +++LS  +    + +  
Sbjct: 161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 220

Query: 526 ----KNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSI 567
                 L  L +   +  G L +   +L  L I+ + FT     +I
Sbjct: 221 LGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 1e-05
 Identities = 28/229 (12%), Positives = 65/229 (28%), Gaps = 6/229 (2%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSD 141
            VI+     S++   +  + S      +Q ++LS++  + S +    S+   L + SL  
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFSP---FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80

Query: 142 SNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRL 201
             ++  I   ++    + V L+       S  +L            +N+    +     +
Sbjct: 81  LRLSDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 139

Query: 202 SQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASL 261
               +   +       S            + +      + L     +            L
Sbjct: 140 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL 199

Query: 262 GNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFN 310
             L  L+L      +        L  +  L  L +      G +  +  
Sbjct: 200 NYLQHLSLSRC--YDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKE 246

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 41/294 (13%), Positives = 81/294 (27%), Gaps = 20/294 (6%)

Query: 385 QNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS 444
           Q + L+   L   +   +     +   +   +               +++++ LS++ + 
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQP--LAEHFSPFRVQHMDLSNSVIE 59

Query: 445 LGNTFKIDSPFPKFSYLSLSACNIS-AFPRFLRTQDELSYLDLSENKIDGQIPSWISEIG 503
           +     I S   K   LSL    +S      L     L  L+LS      +         
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 504 KDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEI 563
              L  +NLS  F    K +                  +    + L +     N    ++
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVA------------VAHVSETITQLNLSGYRKNLQKSDL 167

Query: 564 IHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRN-NRLNGSIPGTFAESNWL 622
              +     L  LDLS++ +              L  L L     +         E   L
Sbjct: 168 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 227

Query: 623 RSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLR 676
           ++L +      G +            L I            +GN    ++  ++
Sbjct: 228 KTLQVFGIVPDGTLQLLKEALPH---LQINCSHFTTIARPTIGNKKNQEIWGIK 278

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 58.7 bits (140), Expect = 1e-09
 Identities = 63/340 (18%), Positives = 109/340 (32%), Gaps = 25/340 (7%)

Query: 290 QLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFS 349
           Q   L+L++      +P++     +     S N L   +P     L++L++   N     
Sbjct: 39  QAHELELNNLGL-SSLPEL--PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNN----- 89

Query: 350 GTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLT 409
             + +     PLLEY+ +S+NQL    +   S  L+ I + NN L+              
Sbjct: 90  --LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 147

Query: 410 DLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNIS 469
                         P++ A       L    +      +    +   +      +   ++
Sbjct: 148 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT 207

Query: 470 AFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLG 529
                      L  L  S   ++ +                      I         NL 
Sbjct: 208 TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY 267

Query: 530 YLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPE 589
           YL+  SN ++    +PPS L  L +SNN+   E+         L+ L  S N L   +PE
Sbjct: 268 YLNASSNEIRSLCDLPPS-LEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPE 321

Query: 590 CIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNN 629
              N    L  L +  N L    P        +  L +N+
Sbjct: 322 LPQN----LKQLHVEYNPLR-EFPDIPE---SVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.7 bits (122), Expect = 2e-07
 Identities = 51/337 (15%), Positives = 106/337 (31%), Gaps = 23/337 (6%)

Query: 220 IEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSG 279
              L+++    S LP+   +L+    L+   +     +P    +L  L + +        
Sbjct: 40  AHELELNNLGLSSLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLLVDNNNLK---- 91

Query: 280 HIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLV 339
               +LS+L  L      SN+   ++P++ N + +   D+ NN L        S      
Sbjct: 92  ----ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 147

Query: 340 LIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIP 399
                           L  L  +     S  +L        S    N  L       ++P
Sbjct: 148 GNNQLEELPE---LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204

Query: 400 SSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFS 459
                  +   L+   +    +    +    +          +    +            
Sbjct: 205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 264

Query: 460 YLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITK 519
            L     + +           L  L++S NK+  ++P+         L  +  S N + +
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP-----RLERLIASFNHLAE 318

Query: 520 MKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISN 556
           + ++P +NL  L +  N L+   P  P S+  L +++
Sbjct: 319 VPELP-QNLKQLHVEYNPLRE-FPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.7 bits (122), Expect = 2e-07
 Identities = 53/325 (16%), Positives = 109/325 (33%), Gaps = 19/325 (5%)

Query: 519 KMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDL 578
           +++    +    L+L +  L   LP  P  L  L+ S N  T E+      + +L V + 
Sbjct: 31  RLRDCLDRQAHELELNNLGLSS-LPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNN 88

Query: 579 SNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQ 638
           +   L+   P        +  +  L   + +  +     ++N L+ L      L      
Sbjct: 89  NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG 148

Query: 639 SLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRI 698
           +       E+ ++  +    A    L  LP+L + +      +  + E    ++ P L  
Sbjct: 149 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTT 208

Query: 699 LDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKIL 758
           +    N                +R+    +         +               +   L
Sbjct: 209 IYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDV---------SENIFSGL 259

Query: 759 TVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNN 818
           +      +  N    EI  +     SL  LN+S+N    ++P+       LE L  S N+
Sbjct: 260 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNH 315

Query: 819 VAGKIPKPLTSLTSLSVLNLSHNRL 843
           +  ++P+      +L  L++ +N L
Sbjct: 316 L-AEVPE---LPQNLKQLHVEYNPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 4e-05
 Identities = 61/336 (18%), Positives = 112/336 (33%), Gaps = 23/336 (6%)

Query: 337 NLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQG 396
               + LNN   S ++P      P LE +  S N L+  + E P  SL+++ + NN L+ 
Sbjct: 39  QAHELELNNLGLS-SLPE---LPPHLESLVASCNSLT-ELPELPQ-SLKSLLVDNNNLK- 91

Query: 397 SIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFP 456
               ++ +L  L +    SNN   + +         LK + + +NSL           F 
Sbjct: 92  ----ALSDLPPLLEYLGVSNNQ--LEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI 145

Query: 457 KFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNF 516
                 L          FL      +        +   + S ++            +  F
Sbjct: 146 AAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF 205

Query: 517 ITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVL 576
           +T +           DL  +L    +     +    L  +  F     +    +  L   
Sbjct: 206 LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 265

Query: 577 DLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAI 636
               N  +  I        PSL  L++ NN+L   +P        L  L  + N L   +
Sbjct: 266 LYYLNASSNEIRSLCDLP-PSLEELNVSNNKLI-ELPALPPR---LERLIASFNHL-AEV 319

Query: 637 PQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQV 672
           P+   N  +   L +    + + FP    ++ +L++
Sbjct: 320 PELPQNLKQ---LHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 4e-05
 Identities = 53/333 (15%), Positives = 96/333 (28%), Gaps = 27/333 (8%)

Query: 108 HLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKN 167
               L L++       +SS      +L     S +++  ++P     LK   V  ++LK 
Sbjct: 39  QAHELELNNLG-----LSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 168 LSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSE 227
           LS     L            +      +   I    N SL            I   +   
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 228 TSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSN 287
               EL +       L  L   Y+            L+  +++   +         +L  
Sbjct: 153 EELPELQN-------LPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF 205

Query: 288 LVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIR----- 342
           L  +   +    +     P +  L     +     +L   +            +      
Sbjct: 206 LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 265

Query: 343 -LNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSS 401
               N+ S  I S     P LE + +S+N+L       P   L+ +  S N L   +P  
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP--RLERLIASFNHLA-EVPEL 322

Query: 402 IFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLK 434
                NL  L ++ N       P +   +  L+
Sbjct: 323 PQ---NLKQLHVEYNPLREF--PDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 8e-05
 Identities = 53/335 (15%), Positives = 107/335 (31%), Gaps = 21/335 (6%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLL-HLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLS 140
               L+L+   L       +SL  L  HL++L  S N    +E+       ++L   + +
Sbjct: 39  QAHELELNNLGL-------SSLPELPPHLESLVASCNSL--TELPELPQSLKSLLVDNNN 89

Query: 141 DSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIR 200
              ++   P  + +L +S   L+ L  L +S     +           ++          
Sbjct: 90  LKALSDLPPL-LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG 148

Query: 201 LSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPAS 260
            +Q   L         T+     +  +            +     L         P   +
Sbjct: 149 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTT 208

Query: 261 LGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLS 320
           +     L             +    + L  L  L  S             L+++      
Sbjct: 209 IYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 268

Query: 321 NNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFP 380
            N  +  I S      +L  + ++NN     +P+     P LE +  S N L+  + E P
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPELP 323

Query: 381 SKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDS 415
             +L+ +++  N L+   P       ++ DL+++S
Sbjct: 324 Q-NLKQLHVEYNPLR-EFPDIPE---SVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 56/308 (18%), Positives = 94/308 (30%), Gaps = 18/308 (5%)

Query: 265 TQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQ 323
            Q   L L +   S  +P    +L     L  S NS   E+P+   +L  +   + +   
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHL---ESLVASCNSL-TELPELPQSLKSLLVDNNNLKA 92

Query: 324 LAGPIPS----HGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF 379
           L+   P       S  Q   L  L N+SF   I     SL  L  +  S   ++   ++ 
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 380 PSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLS 439
                         +     S          L+      + + E      L  L  +Y  
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 440 HNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWI 499
           +N L                   L+               E  +  LSE   +    +  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 500 SEIGKD------SLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLL 553
           S   +       SL  +N+S+N + ++  +P   L  L    N L   +P  P +L+ L 
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLIELPALP-PRLERLIASFNHLAE-VPELPQNLKQLH 330

Query: 554 ISNNQFTG 561
           +  N    
Sbjct: 331 VEYNPLRE 338

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (139), Expect = 2e-09
 Identities = 62/442 (14%), Positives = 121/442 (27%), Gaps = 24/442 (5%)

Query: 256 PVPASLGNLTQLTLLHLMHNNFSG----HIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-- 309
                L  L Q  ++ L     +      I S+L     L  L+L SN            
Sbjct: 18  RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 77

Query: 310 ----NLTQVSFFDLSNNQLAGPIPSHGSRL-QNLVLIRLNNNSFSGTIPSWLFSLPLLEY 364
                  ++    L N  L G      S   + L  ++  + S +    + L  L     
Sbjct: 78  GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL 137

Query: 365 VRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEP 424
                 +         S +      S  R +           ++ +  +          P
Sbjct: 138 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSP 197

Query: 425 YMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYL 484
                L        S N   L       +   + +  S    ++             S L
Sbjct: 198 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 257

Query: 485 DLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPV 544
                   G       ++ +   +  +L    +   +          +           +
Sbjct: 258 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 317

Query: 545 PPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLR 604
              S        + F+  +  +   +      +   +     + + +G     L VL L 
Sbjct: 318 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 377

Query: 605 NNRLNG----SIPGTFAESNWLRSLNLNNNELGGAIPQSLV-----NCTKVEVLDIGNIK 655
           +  ++     S+  T   ++ LR L+L+NN LG A    LV         +E L + +I 
Sbjct: 378 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 437

Query: 656 INDAFPYWLGNL----PELQVL 673
            ++     L  L    P L+V+
Sbjct: 438 WSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (131), Expect = 2e-08
 Identities = 50/448 (11%), Positives = 108/448 (24%), Gaps = 23/448 (5%)

Query: 406 VNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPF---PKFSYLS 462
           +++  L +     S      +   L + + + L    L+      I S     P  + L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 463 LSACNIS-----AFPRFLRTQD-ELSYLDLSENKIDGQIPSWISEIGKDS--LSYVNLSH 514
           L +  +         + L+T   ++  L L    + G     +S   +    L  ++LS 
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

Query: 515 NFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALD 574
           N +                             S+     +++          +       
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181

Query: 575 VLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGG 634
                     G         +  L    + ++          ++++       +N     
Sbjct: 182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241

Query: 635 AIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFP 694
            + +                                 +    S K           E   
Sbjct: 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 301

Query: 695 KLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEM 754
            L    L        L  +      A  +  +          E    +  +   G     
Sbjct: 302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 361

Query: 755 QKIL---TVFTTIDFSSNGFDGE----ISQVIGKLHSLRLLNLSHNHFTGQIPSSLG--- 804
           Q +    +V   +  +           ++  +   HSLR L+LS+N         L    
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 805 --NLAKLESLDLSSNNVAGKIPKPLTSL 830
                 LE L L     + ++   L +L
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 3e-07
 Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 5/93 (5%)

Query: 762 TTIDFSSNGF-DGEISQVIGKLHSLRLLNLSHNHFTGQ----IPSSLGNLAKLESLDLSS 816
            ++D       D   ++++  L   +++ L     T      I S+L     L  L+L S
Sbjct: 5   QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 64

Query: 817 NNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPH 849
           N +       +          +    L      
Sbjct: 65  NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 3e-06
 Identities = 60/481 (12%), Positives = 120/481 (24%), Gaps = 42/481 (8%)

Query: 169 SSSLTSLSLSDCILQGNFPINIF-HLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSE 227
           S  + SL +    L       +   L   Q++RL                       ++E
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-------------------GLTE 41

Query: 228 TSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLG-----NLTQLTLLHLMHNNFSGHIP 282
               ++  ++     L  L L  ++        +         ++  L L +   +G   
Sbjct: 42  ARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 101

Query: 283 SSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIR 342
             LS+ ++        +     + D               +L      + S         
Sbjct: 102 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 161

Query: 343 LNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSI 402
            +             S   +    +              ++L+                I
Sbjct: 162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 221

Query: 403 FELVNLTDLQLDSNN---FSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFS 459
                        +N     G+AE          +   L      +      D      +
Sbjct: 222 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 281

Query: 460 YLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITK 519
             SL   +++           L    L        +            S+ +        
Sbjct: 282 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 341

Query: 520 MKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIA----LDV 575
           + ++   N    D     L   L  P S LRVL +++   +     S+   +     L  
Sbjct: 342 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 401

Query: 576 LDLSNNRLNG----TIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNE 631
           LDLSNN L       + E +      L  L L +   +  +       + L++L  +   
Sbjct: 402 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME------DRLQALEKDKPS 455

Query: 632 L 632
           L
Sbjct: 456 L 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 1e-05
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 784 SLRLLNLSHNHFT-GQIPSSLGNLAKLESLDLSSNNV----AGKIPKPLTSLTSLSVLNL 838
            ++ L++     +  +    L  L + + + L    +       I   L    +L+ LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 839 SHNRLDGPIPH 849
             N L     H
Sbjct: 63  RSNELGDVGVH 73

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 9/75 (12%)

Query: 783 HSLRLLNLSHNHFTGQ----IPSSLGNLAKLESLDLSSNNVAGKIPKPLTS-----LTSL 833
             LR+L L+    +      + ++L     L  LDLS+N +       L          L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 834 SVLNLSHNRLDGPIP 848
             L L        + 
Sbjct: 429 EQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 3e-05
 Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 13/114 (11%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHN---DFDYSEISSGFSRFRNLTHFS 138
           ++ SLD+ C  L  +      L  L   Q + L      +    +ISS       L   +
Sbjct: 3   DIQSLDIQCEEL-SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 139 LSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFH 192
           L  + +     + +            L+  S  +  LSL +C L G     +  
Sbjct: 62  LRSNELGDVGVHCVL---------QGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 106

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 3e-04
 Identities = 10/88 (11%), Positives = 31/88 (35%), Gaps = 5/88 (5%)

Query: 595 SPSLSVLDLRNNRLNGS-IPGTFAESNWLRSLNLNNNELGG----AIPQSLVNCTKVEVL 649
           S  +  LD++   L+ +            + + L++  L       I  +L     +  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 650 DIGNIKINDAFPYWLGNLPELQVLVLRS 677
           ++ + ++ D   + +    +     ++ 
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQK 88

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 5e-04
 Identities = 21/157 (13%), Positives = 42/157 (26%), Gaps = 15/157 (9%)

Query: 52  CQRSYPKMISWKKDTNCCSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLH-LQ 110
              S            C  +  V         + +  +     G       L      L+
Sbjct: 313 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 372

Query: 111 TLNLSHNDFD---YSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKN 167
            L L+  D      S +++      +L    LS++ +      ++          +S++ 
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV---------ESVRQ 423

Query: 168 LSSSLTSLSLSDCILQGNFPINIFHLP--NPQMIRLS 202
               L  L L D          +  L    P +  +S
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 10/87 (11%)

Query: 107 LHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLK 166
           L +Q+L++   +   +  +      +      L D  +      +IS          +L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS---------SALR 52

Query: 167 NLSSSLTSLSLSDCILQGNFPINIFHL 193
               +L  L+L    L       +   
Sbjct: 53  VN-PALAELNLRSNELGDVGVHCVLQG 78

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.6 bits (123), Expect = 1e-08
 Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 3/105 (2%)

Query: 270 LHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIP 329
           LHL H + +  +   L  L+ +T+LDLS N      P +  L  +     S+N     + 
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD 59

Query: 330 SHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSG 374
              +  +   L+  NN          L S P L  + L  N L  
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.6 bits (110), Expect = 1e-06
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 343 LNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSI 402
           L +     T+   L  L L+ ++ LS N+L        +     +  +++    ++    
Sbjct: 5   LAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 403 FELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLS 444
                L +L L +N     A         +L  L L  NSL 
Sbjct: 63  NL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.2 bits (109), Expect = 1e-06
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 1/101 (0%)

Query: 511 NLSHNFITKMKQIPW-KNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICD 569
           +L+H  +T +  +     + +LDL  N L+   P   +   + ++  +    E +  + +
Sbjct: 4   HLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVAN 63

Query: 570 IIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNG 610
           +  L  L L NNRL  +         P L +L+L+ N L  
Sbjct: 64  LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 9e-05
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 10/129 (7%)

Query: 550 RVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLN 609
           RVL +++   T  ++  +  ++ +  LDLS+NRL    P      +    +  L+ +   
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNA 54

Query: 610 GSIPGTFAESNWLRSLNLNNNEL-GGAIPQSLVNCTKVEVLDIGN---IKINDAFPYWLG 665
                  A    L+ L L NN L   A  Q LV+C ++ +L++      +          
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 666 NLPELQVLV 674
            LP +  ++
Sbjct: 115 MLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 6/107 (5%)

Query: 222 YLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHI 281
            L ++    + L   +  L L+  L L +++     P +L  L  L +L    N      
Sbjct: 2   VLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNAL--EN 57

Query: 282 PSSLSNLVQLTYLDLSSNSF--FGEIPDIFNLTQVSFFDLSNNQLAG 326
              ++NL +L  L L +N       I  + +  ++   +L  N L  
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 367 LSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYM 426
           L+   L+          + ++ LS+NRL+   P+    L  L  L++   + + +     
Sbjct: 5   LAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNALENVDG 60

Query: 427 FAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRF 474
            A L +L+ L L +N L      +     P+   L+L   ++      
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 24/88 (27%)

Query: 779 IGKLHSLRLLNLSHNHFTGQIPSSLGNLAKL----------------------ESLDLSS 816
           + +L  +  L+LSHN      P+ L  L  L                      + L L +
Sbjct: 16  LEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDGVANLPRLQELLLCN 74

Query: 817 NNVAG-KIPKPLTSLTSLSVLNLSHNRL 843
           N +      +PL S   L +LNL  N L
Sbjct: 75  NRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 7e-08
 Identities = 30/181 (16%), Positives = 53/181 (29%), Gaps = 7/181 (3%)

Query: 668 PELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSAD 727
            +  +L L  N  +           + +L  L+L     +    +  L  L  +      
Sbjct: 31  KDTTILHLSENLLYTFSLAT--LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQ 88

Query: 728 E----GKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLH 783
                   + L      D     L    +   + L     +    N        ++    
Sbjct: 89  LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148

Query: 784 SLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRL 843
            L  L+L++N+ T      L  L  L++L L  N++   IPK       L    L  N  
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

Query: 844 D 844
            
Sbjct: 208 L 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 3e-07
 Identities = 37/243 (15%), Positives = 67/243 (27%), Gaps = 10/243 (4%)

Query: 260 SLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF-NLTQVSFFD 318
            +  +     ++    N +  +P  L      T L LS N  +          T+++  +
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 319 LSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDE 378
           L   +           L  L  + L++N              L       +   S  +  
Sbjct: 62  LDRAE--LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 379 FPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYL 438
                             ++P  +       +    +NN        +   L  L  L L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 439 SHNSLSLGNTFKIDSPFPKFSYLS----LSACNISAFPRFLRTQDELSYLDLSENKIDGQ 494
             NSL         S    F++L     L  C I  F R+L+   E  Y+      +   
Sbjct: 180 QENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAM 239

Query: 495 IPS 497
             +
Sbjct: 240 TSN 242

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 3e-07
 Identities = 32/230 (13%), Positives = 61/230 (26%), Gaps = 26/230 (11%)

Query: 588 PECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVE 647
           P C  +   S   ++     L  ++P    +      L+L+ N L      +L+  T++ 
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLT 58

Query: 648 VLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFS 707
            L++   ++             L VL       +         ++ P L +LD+S N  +
Sbjct: 59  QLNLDRAELTKLQVDG-----TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113

Query: 708 GYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFS 767
                                                                   +  +
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPT-----------------PKLEKLSLA 156

Query: 768 SNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSN 817
           +N      + ++  L +L  L L  N     IP        L    L  N
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 6e-07
 Identities = 36/227 (15%), Positives = 58/227 (25%), Gaps = 29/227 (12%)

Query: 383 SLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNS 442
           S   +      L  ++P  + +  + T L L  N               +L  L L    
Sbjct: 11  SHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAE 66

Query: 443 LSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEI 502
                              +L                 L    L    +     + ++ +
Sbjct: 67  -----------LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115

Query: 503 GKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGE 562
              +L  +        K  ++              L   L  P   L  L ++NN  T  
Sbjct: 116 PLGALRGLGELQELYLKGNELKT------------LPPGLLTPTPKLEKLSLANNNLTEL 163

Query: 563 IIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLN 609
               +  +  LD L L  N L  TIP+     S  L    L  N   
Sbjct: 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFG-SHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 1e-06
 Identities = 39/216 (18%), Positives = 65/216 (30%), Gaps = 20/216 (9%)

Query: 109 LQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNL 168
              +N    +   + +     +  + T   LS++ +              T  L +L   
Sbjct: 12  HLEVNCDKRNL--TALPPDLPK--DTTILHLSENLL-------------YTFSLATLMPY 54

Query: 169 SSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSET 228
           +  LT L+L     +         LP    + LS N   +         +          
Sbjct: 55  TR-LTQLNLDRA--ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111

Query: 229 SFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNL 288
             S    ++  L  L  L L  ++     P  L    +L  L L +NN +      L+ L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171

Query: 289 VQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQL 324
             L  L L  NS +      F    + F  L  N  
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 33/223 (14%), Positives = 56/223 (25%), Gaps = 26/223 (11%)

Query: 362 LEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGI 421
              V      L+  +     K    ++LS N L     +++     LT L LD    + +
Sbjct: 12  HLEVNCDKRNLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 422 AEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDEL 481
                   L  L   +    SL L             S+  L++  + A       Q+  
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE-- 128

Query: 482 SYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGP 541
                    + G     +          +         + ++P   L  L          
Sbjct: 129 -------LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL---------- 171

Query: 542 LPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLN 584
                 +L  LL+  N     I         L    L  N   
Sbjct: 172 -----ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 4e-04
 Identities = 42/206 (20%), Positives = 69/206 (33%), Gaps = 10/206 (4%)

Query: 504 KDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLP---VPPSSLRVLLISNNQFT 560
             S   VN     +T +     K+   L L  NLL        +P + L  L +   + T
Sbjct: 9   VASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 561 GEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESN 620
              +     ++    L  +  +    + + +   +      D+  NRL     G      
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL----DVSFNRLTSLPLGALRGLG 124

Query: 621 WLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKF 680
            L+ L L  NEL    P  L    K+E L + N  + +     L  L  L  L+L+ N  
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 681 HGSVREFEPKESFPKLRILDLSINNF 706
           +   + F        L    L  N +
Sbjct: 185 YTIPKGF---FGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 6e-04
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 779 IGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNL 838
           + K+ S   +N    + T  +P  L        L LS N +       L   T L+ LNL
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 839 SHNR 842
               
Sbjct: 63  DRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 8e-04
 Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 7/70 (10%)

Query: 565 HSICDIIALDVL---DLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNW 621
           H IC++  +      +     L   +P  +       ++L L  N L      T      
Sbjct: 1   HPICEVSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTR 56

Query: 622 LRSLNLNNNE 631
           L  LNL+  E
Sbjct: 57  LTQLNLDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 3/57 (5%)

Query: 762 TTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNN 818
             ++         +   + K     +L+LS N       ++L    +L  L+L    
Sbjct: 13  LEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 33/198 (16%), Positives = 62/198 (31%), Gaps = 8/198 (4%)

Query: 318 DLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHID 377
           +     L   +P    +  +  ++ L+ N       + L     L  + L   +L+    
Sbjct: 16  NCDKRNLTA-LPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72

Query: 378 EFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLY 437
           +     L  + LS+N+LQ            LT L +  N  + +    +       +   
Sbjct: 73  DGTLPVLGTLDLSHNQLQSLPLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYL 131

Query: 438 LSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPS 497
             +   +L       +P  +   L+ +          L   + L  L L EN +   IP 
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPK 189

Query: 498 WISEIGKDSLSYVNLSHN 515
                G   L +  L  N
Sbjct: 190 GFF--GSHLLPFAFLHGN 205

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.4 bits (119), Expect = 2e-07
 Identities = 35/192 (18%), Positives = 61/192 (31%), Gaps = 11/192 (5%)

Query: 625 LNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSV 684
            NL    +  A+ Q+      ++ +   N  I       +  LP +  L L  NK     
Sbjct: 29  DNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTD-- 82

Query: 685 REFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVV 744
              +P  +   L  L L  N        + L+ L ++         +  L      +S+ 
Sbjct: 83  --IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLY 140

Query: 745 VTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLG 804
           +                       +    +I   +  L  L+ L LS NH +     +L 
Sbjct: 141 LGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD--LRALA 197

Query: 805 NLAKLESLDLSS 816
            L  L+ L+L S
Sbjct: 198 GLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 33/198 (16%), Positives = 72/198 (36%), Gaps = 11/198 (5%)

Query: 642 NCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDL 701
              +    ++    + DA       L  +  ++  ++         +  +  P +  L L
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS----VQGIQYLPNVTKLFL 75

Query: 702 SINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVF 761
           + N  +   P   L+NL  +     ++ K     ++  +   +        ++  ++ + 
Sbjct: 76  NGNKLTDIKPLANLKNLGWLFL-DENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134

Query: 762 TTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAG 821
                           V+ +L  L  L+L  N  +  +P  L  L KL++L LS N+++ 
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192

Query: 822 KIPKPLTSLTSLSVLNLS 839
              + L  L +L VL L 
Sbjct: 193 --LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 39/212 (18%), Positives = 73/212 (34%), Gaps = 24/212 (11%)

Query: 343 LNNNSFSGTIP-SWLFSLPLLEYV---RLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSI 398
           L + + +   P   +FS           L    ++  + +    S+  I  +N+ ++   
Sbjct: 3   LGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ 62

Query: 399 PSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKF 458
              I  L N+T L L+ N  +        A L  L +L+L  N +   ++ K        
Sbjct: 63  G--IQYLPNVTKLFLNGNKLTD---IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117

Query: 459 SYLSLSACNISAFPRFLRTQDELS--------------YLDLSENKIDGQIPSWISEIGK 504
           S       +I+      + +                      + +  D QI   +   G 
Sbjct: 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 177

Query: 505 DSLSYVNLSHNFITKMKQIP-WKNLGYLDLRS 535
             L  + LS N I+ ++ +   KNL  L+L S
Sbjct: 178 TKLQNLYLSKNHISDLRALAGLKNLDVLELFS 209

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 24/216 (11%), Positives = 59/216 (27%), Gaps = 13/216 (6%)

Query: 625 LNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSV 684
           +    + +   + Q+  +   +  L      +       +  L  L  L L+ N+     
Sbjct: 24  IAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQIT--- 76

Query: 685 REFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVV 744
                               N    +            ++++ +              V+
Sbjct: 77  --DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134

Query: 745 VTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLG 804
                    +  +  +      S           +  L  L  L    N  +   P  L 
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LA 192

Query: 805 NLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSH 840
           +L  L  + L +N ++   P  L + ++L ++ L++
Sbjct: 193 SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 4e-06
 Identities = 33/230 (14%), Positives = 71/230 (30%), Gaps = 19/230 (8%)

Query: 379 FPSKSLQN---IYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKY 435
           FP  +L N   I    + +  ++  +  +L  +T L       + I        L  L  
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEG---VQYLNNLIG 67

Query: 436 LYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQI 495
           L L        N     +P    + ++    + +            S   L         
Sbjct: 68  LELKD------NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD 121

Query: 496 PSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLIS 555
            + ++ +    + Y++L+                     + +         S L  L   
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD 181

Query: 556 NNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRN 605
           +N+ +   I  +  +  L  + L NN+++   P  + N   +L ++ L N
Sbjct: 182 DNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANT-SNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 8e-06
 Identities = 34/217 (15%), Positives = 62/217 (28%), Gaps = 12/217 (5%)

Query: 82  NVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSD 141
           N I +    S +   +        L  + TL+         E   G     NL    L D
Sbjct: 20  NAIKIAAGKSNVTDTVTQA----DLDGITTLSAFGTGVTTIE---GVQYLNNLIGLELKD 72

Query: 142 SNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQG-NFPINIFHLPNPQMIR 200
           + I    P +         +  +     S++  L     +        ++  L     ++
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 201 LSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPAS 260
           +           +               +       + NL  L  L    ++     P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 261 LGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLS 297
           L +L  L  +HL +N  S   P  L+N   L  + L+
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 31/230 (13%), Positives = 75/230 (32%), Gaps = 13/230 (5%)

Query: 400 SSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFS 459
           + IF    L +    +   S + +    A L  +  L      ++   T +         
Sbjct: 10  NVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLI 66

Query: 460 YLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITK 519
            L L    I+          +              + +  +  G  S+  ++L+   IT 
Sbjct: 67  GLELKDNQITDLAPL-----KNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD 121

Query: 520 MKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLS 579
           +  +   +   +          +        +  +S        +  + ++  L  L   
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD 181

Query: 580 NNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNN 629
           +N+++   P  + +  P+L  + L+NN+++   P   A ++ L  + L N
Sbjct: 182 DNKISDISP--LASL-PNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 34/207 (16%), Positives = 64/207 (30%), Gaps = 11/207 (5%)

Query: 642 NCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDL 701
                  +  G   + D       +L  +  L          V   E  +    L  L+L
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTG----VTTIEGVQYLNNLIGLEL 70

Query: 702 SINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVF 761
             N  +       L+NL  +  +      L+ +       S+      +           
Sbjct: 71  KDNQITDL---APLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 762 TTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAG 821
            +          +I+ +        L  LS  +      + L NL+KL +L    N ++ 
Sbjct: 128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD 187

Query: 822 KIPKPLTSLTSLSVLNLSHNRLDGPIP 848
             P  L SL +L  ++L +N++    P
Sbjct: 188 ISP--LASLPNLIEVHLKNNQISDVSP 212

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 50.3 bits (118), Expect = 6e-07
 Identities = 38/333 (11%), Positives = 97/333 (29%), Gaps = 20/333 (6%)

Query: 548 SLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNF---SPSLSVLDLR 604
           SL++  I+       +   + +  ++  + LS N +       +         L + +  
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 605 NNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIG-NIKINDAFPYW 663
           +                L    L   +L              +   I    K       +
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 664 LGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRN 723
           L N         +  +    +   +  ++ P LR +    N       + + +   + R 
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 724 VSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLH 783
           +   +     +  E  +  ++  L       Q++  +    +  ++     ++  +    
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGL----AYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 784 SLRLLNLSHNHFTGQIPSSLGN------LAKLESLDLSSNNVAGKIPKPLTS-----LTS 832
           +LR L L+    + +  +++ +         L++L L  N +     + L +     +  
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 833 LSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNL 865
           L  L L+ NR         +          G L
Sbjct: 304 LLFLELNGNRFSEEDDVVDEIREVFSTRGRGEL 336

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.7 bits (101), Expect = 6e-05
 Identities = 15/122 (12%), Positives = 35/122 (28%), Gaps = 5/122 (4%)

Query: 784 SLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNV----AGKIPKPLTSLTSLSVLNLS 839
           SL+L  ++       + + L     ++ + LS N +    A  + + + S   L +   S
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 840 HNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKCGNDEAPTTFHEEDEEAESSSSWF 899
                      P+       + +    L    L+       A     +   +       +
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 900 DW 901
             
Sbjct: 128 LH 129

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 3e-04
 Identities = 38/330 (11%), Positives = 79/330 (23%), Gaps = 36/330 (10%)

Query: 362 LEYVRLSDNQLSGHIDEFPS-KSLQNIYLSNNRLQG----SIPSSIFELVNLTDLQLDSN 416
           L+   ++               S++ I LS N +       +  +I    +L   +    
Sbjct: 10  LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69

Query: 417 NFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLR 476
               + +       I      L    L       +      F   +              
Sbjct: 70  FTGRVKD------EIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 477 TQDELSYLDLSENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSN 536
               L    L          +                 + I    ++   ++        
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 537 LLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSP 596
             +    V      +          E +    ++  LD+ D +   L  +         P
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 597 SLSVLDLRNNRLNGSIPGTFAESNW------LRSLNLNNNELGGAIPQSLVNCTKVEVLD 650
           +L  L L +  L+        ++        L++L L  NE+     ++L          
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID----- 298

Query: 651 IGNIKINDAFPYWLGNLPELQVLVLRSNKF 680
                           +P+L  L L  N+F
Sbjct: 299 --------------EKMPDLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 5e-04
 Identities = 39/311 (12%), Positives = 75/311 (24%), Gaps = 24/311 (7%)

Query: 315 SFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSG----TIPSWLFSLPLLEYVRLSDN 370
               ++       + +      ++  I L+ N+        +   + S   LE    SD 
Sbjct: 11  KLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69

Query: 371 QLSGHIDEFPS--KSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFA 428
                 DE P   + L    L   +L     S         +  +D  +     E     
Sbjct: 70  FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH 129

Query: 429 KLIKLKYLYLSHNSLSLGNTFKIDSP-FPKFSYLSLSACNISAFPRFLRTQDELSYLDLS 487
                                   +   P    +      +         +   S+  L 
Sbjct: 130 NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 189

Query: 488 ENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPS 547
             K+                         +  ++   + +LG   L   L   P      
Sbjct: 190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 249

Query: 548 SLRVLLISNNQFTGEIIHSICDIIA------LDVLDLSNNRLNG----TIPECIGNFSPS 597
                 +++   +     ++ D  +      L  L L  N +      T+   I    P 
Sbjct: 250 ------LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 598 LSVLDLRNNRL 608
           L  L+L  NR 
Sbjct: 304 LLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 7e-04
 Identities = 30/306 (9%), Positives = 79/306 (25%), Gaps = 14/306 (4%)

Query: 291 LTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQL----AGPIPSHGSRLQNLVLIRLNNN 346
           L    +++         +     V    LS N +    A  +  + +  ++L +   ++ 
Sbjct: 10  LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69

Query: 347 S---FSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIF 403
                   IP  L  L          + +    + F   + + +    ++    +     
Sbjct: 70  FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK-HTPLEHLYL 128

Query: 404 ELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKFSYLSL 463
               L          +                  +      L N    +      S+  L
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 464 SACNISAFPRFLRTQDELSYLDL-SENKIDGQIPSWISEIGKDSLSYVNLSHNFITKMKQ 522
               +          + L    L    ++        +     S +      ++    + 
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248

Query: 523 IPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIA-----LDVLD 577
                L      + ++     +    L+ L +  N+   + + ++  +I      L  L+
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308

Query: 578 LSNNRL 583
           L+ NR 
Sbjct: 309 LNGNRF 314

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 25/253 (9%), Positives = 60/253 (23%), Gaps = 20/253 (7%)

Query: 565 HSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRS 624
           H IC   +  V     +++   IP    +   +   L     +L     G F+    L  
Sbjct: 3   HRICHC-SNRVFLCQESKVT-EIPS---DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEK 57

Query: 625 LNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSV 684
           + ++ N++   I   + +              N  +                  +   ++
Sbjct: 58  IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP---------------EAFQNL 102

Query: 685 REFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVV 744
              +              ++              N   +       +    E        
Sbjct: 103 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 162

Query: 745 VTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLG 804
             ++           +       +N  +   + V        +L++S           L 
Sbjct: 163 NGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE 222

Query: 805 NLAKLESLDLSSN 817
           NL KL +    + 
Sbjct: 223 NLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 4e-05
 Identities = 36/249 (14%), Positives = 79/249 (31%), Gaps = 21/249 (8%)

Query: 383 SLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNS 442
           S +      +++   IPS +    N  +L+        I +   F+    L+ + +S N 
Sbjct: 9   SNRVFLCQESKVT-EIPSDLPR--NAIELRFVLTKLRVI-QKGAFSGFGDLEKIEISQND 64

Query: 443 LSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEI 502
           +       + S  PK   + +   N   +      Q+  +   L  +    +    + +I
Sbjct: 65  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 124

Query: 503 GKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGE 562
                  +++  N      +         +                    L  N     E
Sbjct: 125 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVI-----------------LWLNKNGIQE 167

Query: 563 IIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWL 622
           I +   +   LD L+LS+N     +P  + + +    +LD+   R++            L
Sbjct: 168 IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL 227

Query: 623 RSLNLNNNE 631
           R+ +  N +
Sbjct: 228 RARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 24/246 (9%), Positives = 61/246 (24%), Gaps = 18/246 (7%)

Query: 597 SLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKI 656
           S  V   + +++   IP     +     L     +L      +      +E ++I    +
Sbjct: 9   SNRVFLCQESKVT-EIPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 657 NDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLE 716
            +     + +       +      +      E  ++ P L+ L +S            + 
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 717 NLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEIS 776
           +L  +                      +            +      +  + NG     +
Sbjct: 126 SLQKVL---------------LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN 170

Query: 777 QVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVL 836
                     L    +N+            +    LD+S   +       L +L  L   
Sbjct: 171 CAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 230

Query: 837 NLSHNR 842
           +  + +
Sbjct: 231 STYNLK 236

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 26/178 (14%), Positives = 56/178 (31%), Gaps = 3/178 (1%)

Query: 383 SLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLSHNS 442
               +  +   L+  IP  I    + T+L L+ N    I+   +F +L  L  L L  N 
Sbjct: 9   EGTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ 65

Query: 443 LSLGNTFKIDSPFPKFSYLSLSACNISAFPRFLRTQDELSYLDLSENKIDGQIPSWISEI 502
           L+       +                    +      +L  L+L +N+I   +P     +
Sbjct: 66  LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125

Query: 503 GKDSLSYVNLSHNFITKMKQIPWKNLGYLDLRSNLLQGPLPVPPSSLRVLLISNNQFT 560
              +   +  +            + L    L     +   P     +++  + +++F 
Sbjct: 126 NSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFK 183

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 3/97 (3%)

Query: 258 PASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFF 317
                 L QL  L+L  N  S  +P S  +L  LT L+L+SN F       +    +   
Sbjct: 95  NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKK 154

Query: 318 DLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPS 354
            L+        PS    ++++ +  L ++ F  +  +
Sbjct: 155 SLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSEN 188

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 16/102 (15%), Positives = 27/102 (26%), Gaps = 3/102 (2%)

Query: 271 HLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPS 330
            L  N            L QL  L+L  N     +P  F            +        
Sbjct: 84  QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143

Query: 331 HGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQL 372
                + L    LN  +     PS +  + + +   L  ++ 
Sbjct: 144 LAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKD---LPHSEF 182

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 3/97 (3%)

Query: 782 LHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHN 841
               R L+L        I +    L + +++D S N +      P   L  L  L +++N
Sbjct: 17  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVNNN 73

Query: 842 RLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKCGN 878
           R+        Q      +  + N  L          +
Sbjct: 74  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLAS 110

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 3/120 (2%)

Query: 259 ASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFD 318
           A   N  +   L L        I +  + L Q   +D S N    ++     L ++    
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLL 69

Query: 319 LSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSG-TIPSWLFSLPLLEYVRLSDNQLSGHID 377
           ++NN++          L +L  + L NNS         L SL  L Y+ +  N ++    
Sbjct: 70  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 9/146 (6%)

Query: 533 LRSNLLQGPLP-VPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECI 591
           L + L++           R L +   +    I +    +   D +D S+N +   +    
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGFP 60

Query: 592 GNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGG----AIPQSLVNCTKVE 647
                 L  L + NNR+     G       L  L L NN L          SL + T + 
Sbjct: 61  LL--RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 118

Query: 648 VLDIGNIKINDAFPYWLGNLPELQVL 673
           +L            Y +  +P+++VL
Sbjct: 119 ILRNPVTNKKHYRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 1/43 (2%)

Query: 801 SSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRL 843
           +   N  +   LDL    +   I     +L     ++ S N +
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI 53

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 24/134 (17%), Positives = 44/134 (32%), Gaps = 1/134 (0%)

Query: 546 PSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRN 605
           P     L  + +    + +H +     L  L + N +    +          L  L +  
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 606 NRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLG 665
           + L    P  F  +  L  LNL+ N L     +++   +  E++  GN         WL 
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125

Query: 666 NLPELQVLVLRSNK 679
              E  +  +   K
Sbjct: 126 RWEEEGLGGVPEQK 139

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 3/131 (2%)

Query: 290 QLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPS-HGSRLQNLVLIRLNNNSF 348
             + L  + +     +  +     ++   + N Q    +       L  L  + +  +  
Sbjct: 9   GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 349 SGTIPSWLFSLPLLEYVRLSDNQLSGHIDE-FPSKSLQNIYLSNNRLQGSIPSSIF-ELV 406
               P      P L  + LS N L     +     SLQ + LS N L  S          
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWE 128

Query: 407 NLTDLQLDSNN 417
                 +    
Sbjct: 129 EEGLGGVPEQK 139

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 21/141 (14%), Positives = 42/141 (29%), Gaps = 5/141 (3%)

Query: 306 PDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFS-LPLLEY 364
           PD       S    + +        H    +NL  + + N      +       L  L  
Sbjct: 2   PDACCPHGSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60

Query: 365 VRLSDNQLSGHIDE--FPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIA 422
           + +  + L     +    +  L  + LS N L+ S+     + ++L +L L  N      
Sbjct: 61  LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSC 119

Query: 423 EPYMFAKLIKLKYLYLSHNSL 443
                 +  +     +    L
Sbjct: 120 ALRWLQRWEEEGLGGVPEQKL 140

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 32/195 (16%), Positives = 60/195 (30%), Gaps = 11/195 (5%)

Query: 642 NCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDL 701
              +     +G   + D       +L ++  L          ++  +  E    L  ++ 
Sbjct: 16  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG----IKSIDGVEYLNNLTQINF 69

Query: 702 SINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVF 761
           S N  +       L+NL  + ++  +  ++  +       ++                  
Sbjct: 70  SNNQLTDI---TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 126

Query: 762 TTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAG 821
            T           IS +        L  L+ +         L NL  LE LD+SSN V+ 
Sbjct: 127 LTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD 186

Query: 822 KIPKPLTSLTSLSVL 836
                L  LT+L  L
Sbjct: 187 --ISVLAKLTNLESL 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	901
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.7
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.47
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.36
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.36
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.36
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.34
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.34
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.33
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.14
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.1
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.09
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.07
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.06
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.92
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.49
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.15
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.61
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.97

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=3.8e-40  Score=352.53  Aligned_cols=293  Identities=27%  Similarity=0.423  Sum_probs=240.6

Q ss_pred             CCCHHHHHHHHHhhhcCcCCCCCccccccCCCcCCCCCCCCCCc--CccceeecCCC--CeEEEEEcCCCCCCCC--CCC
Q 041976           26 HCPREQSSALIQFKQLFSFDEDSSFVCQRSYPKMISWKKDTNCC--SWDGVTCDMAT--GNVISLDLSCSWLHGN--IPT   99 (901)
Q Consensus        26 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c--~w~gv~c~~~~--~~v~~l~L~~~~~~g~--~~~   99 (901)
                      -|.++||+||++||+++.++.           .+++|..++|||  .|.||+|+..+  +||++|+|+++.+.|.  +|+
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-----------~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~   70 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-----------TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS   70 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-----------GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-----------cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCCh
Confidence            599999999999999998653           689999889999  49999998643  4899999999999884  566


Q ss_pred             CcccccCccCceEeCCC-CCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcC
Q 041976          100 NTSLFHLLHLQTLNLSH-NDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLS  178 (901)
Q Consensus       100 ~~~l~~l~~L~~L~Ls~-n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls  178 (901)
                        .++++++|++|+|++ |++.+. +|+.|+++++|++|+|++|++.+..|..+..+              ..|++++++
T Consensus        71 --~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~--------------~~L~~l~l~  133 (313)
T d1ogqa_          71 --SLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI--------------KTLVTLDFS  133 (313)
T ss_dssp             --GGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGC--------------TTCCEEECC
T ss_pred             --HHhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccch--------------hhhcccccc
Confidence              888888888888886 778776 88888888888888888888887777777777              888888888


Q ss_pred             CCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCc-CEEECCCCCCccCC
Q 041976          179 DCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLL-GRLMLGYSQFVGPV  257 (901)
Q Consensus       179 ~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L-~~L~L~~n~~~~~~  257 (901)
                      +|.+.+.+|..++++++|+++++++| .+.+.+|                      +.+..+..+ +.+++++|++++..
T Consensus       134 ~N~~~~~~p~~l~~l~~L~~l~l~~n-~l~~~ip----------------------~~~~~l~~l~~~l~~~~n~l~~~~  190 (313)
T d1ogqa_         134 YNALSGTLPPSISSLPNLVGITFDGN-RISGAIP----------------------DSYGSFSKLFTSMTISRNRLTGKI  190 (313)
T ss_dssp             SSEEESCCCGGGGGCTTCCEEECCSS-CCEEECC----------------------GGGGCCCTTCCEEECCSSEEEEEC
T ss_pred             cccccccCchhhccCcccceeecccc-ccccccc----------------------cccccccccccccccccccccccc
Confidence            88888888888888888888888888 7777766                      666666665 77888888888877


Q ss_pred             CccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcC
Q 041976          258 PASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQN  337 (901)
Q Consensus       258 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  337 (901)
                      |..+..+..+ .+++..+...+.+|..+..+++++.+++++|.+.+.++.+..+++|+.|++++|+++|.+|.+++++++
T Consensus       191 ~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~  269 (313)
T d1ogqa_         191 PPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF  269 (313)
T ss_dssp             CGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred             cccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCC
Confidence            7777766544 688888888888888888888888888888888877777777888888888888888888888888888


Q ss_pred             CcEEECcCCcCcccCChhhcCCCCCcEEEccCCc
Q 041976          338 LVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQ  371 (901)
Q Consensus       338 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  371 (901)
                      |++|+|++|+++|.+|+ ++++++|+.+++++|+
T Consensus       270 L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         270 LHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             CCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            88888888888877774 5677777777777775

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=1.9e-30  Score=276.69  Aligned_cols=257  Identities=30%  Similarity=0.508  Sum_probs=178.5

Q ss_pred             CCEEECCCCcCcc--cCCcchhcCCCCccEEECCC-CcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEE
Q 041976          573 LDVLDLSNNRLNG--TIPECIGNFSPSLSVLDLRN-NRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVL  649 (901)
Q Consensus       573 L~~L~Ls~n~l~~--~~p~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  649 (901)
                      ++.|++++|.++|  .+|..++.+. +|++|+|++ |+++|.+|..|+++++|++|+|++|++.+..+..+..+.+|+++
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~-~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCc-cccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            3344444444443  2444444443 555555543 44544455555555555555555555555555555555555555


Q ss_pred             eCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCC-CcEEEcCCCccccCCcHHHHHhhHhhhcccccC
Q 041976          650 DIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPK-LRILDLSINNFSGYLPERFLENLNAMRNVSADE  728 (901)
Q Consensus       650 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~  728 (901)
                      ++++|++.+.+|..+.+++.|+++++++|.+.+.+|...  ..+.. ++.+++++|++++..|..+ .            
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~--~~l~~l~~~l~~~~n~l~~~~~~~~-~------------  195 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTF-A------------  195 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGGG-G------------
T ss_pred             ccccccccccCchhhccCcccceeecccccccccccccc--ccccccccccccccccccccccccc-c------------
Confidence            555555555555555555555555555555555444332  23333 3677777777777666432 0            


Q ss_pred             CcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCC
Q 041976          729 GKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAK  808 (901)
Q Consensus       729 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~  808 (901)
                                                   ......++++++.+.+.+|..++.+++++.+++++|.+++.+| .++.+++
T Consensus       196 -----------------------------~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~  245 (313)
T d1ogqa_         196 -----------------------------NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKN  245 (313)
T ss_dssp             -----------------------------GCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTT
T ss_pred             -----------------------------ccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence                                         0123468889999999999999999999999999999998765 6888999


Q ss_pred             CCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCCCCCCCCCcccccccCCcCCCCCCCCCCC
Q 041976          809 LESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIPHGPQFNTFQEDSYIGNLGLCGFPLTKKC  876 (901)
Q Consensus       809 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~~~n~~lcg~~l~~~c  876 (901)
                      |+.|||++|+++|.+|+.++++++|++|+|++|+|+|.||+.+.+.+++...+.||+.+||.|+. .|
T Consensus       246 L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            99999999999999999999999999999999999999999888889999999999999999874 56

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=2.5e-25  Score=244.55  Aligned_cols=210  Identities=25%  Similarity=0.374  Sum_probs=139.2

Q ss_pred             CCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEE
Q 041976          570 IIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVL  649 (901)
Q Consensus       570 l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  649 (901)
                      .+.........|...  .......+. +++.+++++|.+++..|  +..+++|++|++++|+++..  ..+..+++|+.|
T Consensus       174 ~~~~~~~~~~~~~~~--~~~~~~~l~-~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  246 (384)
T d2omza2         174 LTTLERLDISSNKVS--DISVLAKLT-NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDL  246 (384)
T ss_dssp             CTTCCEEECCSSCCC--CCGGGGGCT-TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             ccccccccccccccc--ccccccccc-ccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchh
Confidence            333444444444432  222333333 66666666666665433  34455666677776666542  346666777777


Q ss_pred             eCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCC
Q 041976          650 DIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEG  729 (901)
Q Consensus       650 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~  729 (901)
                      ++++|++++..+  +..+++|++|++++|++.+..    .+..++.++.++++.|.+.+. +. +               
T Consensus       247 ~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~----~~~~~~~l~~l~~~~n~l~~~-~~-~---------------  303 (384)
T d2omza2         247 DLANNQISNLAP--LSGLTKLTELKLGANQISNIS----PLAGLTALTNLELNENQLEDI-SP-I---------------  303 (384)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCSCC-GG-G---------------
T ss_pred             ccccCccCCCCc--ccccccCCEeeccCcccCCCC----ccccccccccccccccccccc-cc-c---------------
Confidence            777777666443  566677777777777765432    234566777777777776542 10 0               


Q ss_pred             cccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCC
Q 041976          730 KLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKL  809 (901)
Q Consensus       730 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L  809 (901)
                                                ..++.++.|++++|++++..+  +..+++|++|++++|++++. + .|+++++|
T Consensus       304 --------------------------~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l-~-~l~~l~~L  353 (384)
T d2omza2         304 --------------------------SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV-S-SLANLTNI  353 (384)
T ss_dssp             --------------------------GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-G-GGGGCTTC
T ss_pred             --------------------------chhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCC-h-hHcCCCCC
Confidence                                      114667888888888887543  78899999999999999863 3 68889999


Q ss_pred             CEEeCCCCccCCCCCcCCcCCCCCCeeeCCCC
Q 041976          810 ESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHN  841 (901)
Q Consensus       810 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  841 (901)
                      ++|++++|++++..|  +.++++|++|+|++|
T Consensus       354 ~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         354 NWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            999999999987755  888999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=8.5e-25  Score=240.21  Aligned_cols=142  Identities=22%  Similarity=0.293  Sum_probs=79.3

Q ss_pred             CCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEc
Q 041976          548 SLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNL  627 (901)
Q Consensus       548 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  627 (901)
                      +++.+++++|.+++..  .+..+++|++|++++|.+++..  .+..+. .++.++++.|.+++.  ..+..+++++.|++
T Consensus       242 ~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~-~l~~l~~~~n~l~~~--~~~~~~~~l~~L~l  314 (384)
T d2omza2         242 NLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLT-ALTNLELNENQLEDI--SPISNLKNLTYLTL  314 (384)
T ss_dssp             TCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCT-TCSEEECCSSCCSCC--GGGGGCTTCSEEEC
T ss_pred             ccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--cccccc-ccccccccccccccc--cccchhcccCeEEC
Confidence            3444444444444332  2445556666666666655322  133333 566666666666542  23555666666666


Q ss_pred             cCCcccccCCccccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCC
Q 041976          628 NNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSIN  704 (901)
Q Consensus       628 s~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n  704 (901)
                      ++|++++..  .+..+++|++|++++|++++. + .+.++++|++|++++|++++..+    +.++++|+.|+|++|
T Consensus       315 s~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l-~-~l~~l~~L~~L~l~~N~l~~l~~----l~~l~~L~~L~L~~N  383 (384)
T d2omza2         315 YFNNISDIS--PVSSLTKLQRLFFANNKVSDV-S-SLANLTNINWLSAGHNQISDLTP----LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSSCCSCCG--GGGGCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCCBCGG----GTTCTTCSEEECCCE
T ss_pred             CCCCCCCCc--ccccCCCCCEEECCCCCCCCC-h-hHcCCCCCCEEECCCCcCCCChh----hccCCCCCEeeCCCC
Confidence            666666542  255666666666666666542 2 35666666666666666654332    355666777777665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=3.7e-23  Score=218.87  Aligned_cols=271  Identities=18%  Similarity=0.203  Sum_probs=209.0

Q ss_pred             ceeeccCccccCCCCCCCCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcc
Q 041976          529 GYLDLRSNLLQGPLPVPPSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRL  608 (901)
Q Consensus       529 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l  608 (901)
                      +.++.++..++...+..++++++|++++|+++...+..|.++++|++|++++|.+....|..+..+. .|+.|++++|++
T Consensus        13 ~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~-~L~~L~l~~n~l   91 (305)
T d1xkua_          13 RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-KLERLYLSKNQL   91 (305)
T ss_dssp             TEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCC
T ss_pred             CEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCC-ccCEecccCCcc
Confidence            4445555555544334457788888888888877667888889999999999998866677777776 899999999988


Q ss_pred             cccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcC--ccCccccccCCCCCcEEEccCCcCcccCCC
Q 041976          609 NGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKI--NDAFPYWLGNLPELQVLVLRSNKFHGSVRE  686 (901)
Q Consensus       609 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l--~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~  686 (901)
                      +.. |..+  ...++.|++.+|.+.+..+..+.....+..++...|..  ....+..+..+++|+++++++|.+... +.
T Consensus        92 ~~l-~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l-~~  167 (305)
T d1xkua_          92 KEL-PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-PQ  167 (305)
T ss_dssp             SBC-CSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-CS
T ss_pred             CcC-ccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc-Cc
Confidence            854 4332  34688889999998877777777888888888888754  344456677888999999999987642 22


Q ss_pred             CCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEc
Q 041976          687 FEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDF  766 (901)
Q Consensus       687 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L  766 (901)
                          ..+++|+.|++++|...+..+..+                                         ..++.++.|++
T Consensus       168 ----~~~~~L~~L~l~~n~~~~~~~~~~-----------------------------------------~~~~~l~~L~~  202 (305)
T d1xkua_         168 ----GLPPSLTELHLDGNKITKVDAASL-----------------------------------------KGLNNLAKLGL  202 (305)
T ss_dssp             ----SCCTTCSEEECTTSCCCEECTGGG-----------------------------------------TTCTTCCEEEC
T ss_pred             ----ccCCccCEEECCCCcCCCCChhHh-----------------------------------------hcccccccccc
Confidence                346789999999998887665432                                         11466788999


Q ss_pred             cccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCcCC------cCCCCCCeeeCCC
Q 041976          767 SSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPKPL------TSLTSLSVLNLSH  840 (901)
Q Consensus       767 s~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l------~~l~~L~~L~Ls~  840 (901)
                      ++|.+++..+..+.++++|++|+|++|+|+. +|.+|.++++|++|+|++|+|+.+.+..|      ..+.+|+.|+|++
T Consensus       203 s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~  281 (305)
T d1xkua_         203 SFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS  281 (305)
T ss_dssp             CSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred             ccccccccccccccccccceeeecccccccc-cccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCC
Confidence            9999999889999999999999999999984 57899999999999999999997655444      4568899999999


Q ss_pred             CcCc-cCCCCC
Q 041976          841 NRLD-GPIPHG  850 (901)
Q Consensus       841 N~l~-g~iP~~  850 (901)
                      |+++ ..+|.+
T Consensus       282 N~~~~~~~~~~  292 (305)
T d1xkua_         282 NPVQYWEIQPS  292 (305)
T ss_dssp             SSSCGGGSCGG
T ss_pred             CcCccCcCCHh
Confidence            9985 455543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=4.3e-22  Score=210.55  Aligned_cols=264  Identities=22%  Similarity=0.249  Sum_probs=185.2

Q ss_pred             cCccceeecCCCCeEEEEEcCCCCCCCCCCCCcccccCccCceEeCCCCCCCCCcCC-ccccCCCCCceeeCCCCcCCCC
Q 041976           69 CSWDGVTCDMATGNVISLDLSCSWLHGNIPTNTSLFHLLHLQTLNLSHNDFDYSEIS-SGFSRFRNLTHFSLSDSNINCK  147 (901)
Q Consensus        69 c~w~gv~c~~~~~~v~~l~L~~~~~~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~-~~l~~l~~L~~L~Ls~~~~~~~  147 (901)
                      |.|++|.|+..            +++ .+|+  .+  .+.+++|+|++|+++.  +| ..|.++++|++|++++|.+...
T Consensus        10 c~~~~~~C~~~------------~L~-~lP~--~l--~~~l~~L~Ls~N~i~~--l~~~~f~~l~~L~~L~l~~n~~~~i   70 (305)
T d1xkua_          10 CHLRVVQCSDL------------GLE-KVPK--DL--PPDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINNKISKI   70 (305)
T ss_dssp             EETTEEECTTS------------CCC-SCCC--SC--CTTCCEEECCSSCCCC--BCTTTTTTCTTCCEEECCSSCCCCB
T ss_pred             ecCCEEEecCC------------CCC-ccCC--CC--CCCCCEEECcCCcCCC--cChhHhhcccccccccccccccccc
Confidence            78999999742            222 3333  23  2567888888887766  44 3577888888888888887765


Q ss_pred             CCcccccccccccchhhcccCCCCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCC-CCCCCCcceeecC
Q 041976          148 IPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPA-NNWTSPIEYLDVS  226 (901)
Q Consensus       148 ~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~-~~~~~~L~~L~Ls  226 (901)
                      .|..+.++              +.|++|++++|+++. +|..  ....++.|++..| .+.+..+. +.....++.++..
T Consensus        71 ~~~~f~~l--------------~~L~~L~l~~n~l~~-l~~~--~~~~l~~L~~~~n-~l~~l~~~~~~~~~~~~~l~~~  132 (305)
T d1xkua_          71 SPGAFAPL--------------VKLERLYLSKNQLKE-LPEK--MPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELG  132 (305)
T ss_dssp             CTTTTTTC--------------TTCCEEECCSSCCSB-CCSS--CCTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECC
T ss_pred             chhhhhCC--------------CccCEecccCCccCc-Cccc--hhhhhhhhhcccc-chhhhhhhhhhccccccccccc
Confidence            66677777              788888888887764 3332  2356777777777 55443221 3445566677776


Q ss_pred             CCCCc---cCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcc
Q 041976          227 ETSFS---ELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFG  303 (901)
Q Consensus       227 ~~~l~---~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  303 (901)
                      .+...   ..+..+..+++|+++++++|.+.. +|..+  +++|++|++++|..++..+..+..++.+++|++++|.+.+
T Consensus       133 ~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~  209 (305)
T d1xkua_         133 TNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA  209 (305)
T ss_dssp             SSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred             cccccccCCCccccccccccCccccccCCccc-cCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccc
Confidence            66544   224456777888888888887763 44433  5778888888888887777788888888888888888887


Q ss_pred             cCCC-CCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChh------hcCCCCCcEEEccCCccc
Q 041976          304 EIPD-IFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSW------LFSLPLLEYVRLSDNQLS  373 (901)
Q Consensus       304 ~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------l~~l~~L~~L~L~~n~l~  373 (901)
                      ..+. +.++++|++|++++|+++ .+|.++..+++|++|++++|+++......      ....++|+.|++++|.+.
T Consensus       210 ~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         210 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             cccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            7666 677888888888888887 46778888888888888888887543322      345677888888888765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.3e-22  Score=212.03  Aligned_cols=226  Identities=22%  Similarity=0.240  Sum_probs=188.1

Q ss_pred             EEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCC-C
Q 041976          575 VLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIG-N  653 (901)
Q Consensus       575 ~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~-~  653 (901)
                      .++.+++.++ .+|..+   ++.+++|+|++|+|+.+.+..|.++++|++|++++|++....+..+..++.++.++.. .
T Consensus        15 ~v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            4566777776 677654   3478999999999988877889999999999999999998888888888889888765 5


Q ss_pred             CcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccc
Q 041976          654 IKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRY  733 (901)
Q Consensus       654 n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~  733 (901)
                      +.+....+..|.++++|++|++++|.+....+..  +...++|+.+++++|++++..+..+ .                 
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~~~L~~l~l~~N~l~~i~~~~f-~-----------------  150 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL--FRGLAALQYLYLQDNALQALPDDTF-R-----------------  150 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT--TTTCTTCCEEECCSSCCCCCCTTTT-T-----------------
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccc--cchhcccchhhhccccccccChhHh-c-----------------
Confidence            6777777888999999999999999886554433  3667889999999999885443221 1                 


Q ss_pred             cCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEe
Q 041976          734 LGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLD  813 (901)
Q Consensus       734 l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~  813 (901)
                                             ..+.|+.|++++|++++..+..|.++++|+++++++|++++..|..|.++++|++||
T Consensus       151 -----------------------~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~  207 (284)
T d1ozna_         151 -----------------------DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY  207 (284)
T ss_dssp             -----------------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             -----------------------cccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccc
Confidence                                   146688999999999988888999999999999999999999999999999999999


Q ss_pred             CCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCC
Q 041976          814 LSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPI  847 (901)
Q Consensus       814 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i  847 (901)
                      +++|++.+..|..|..+++|++|++++|++.+.-
T Consensus       208 l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             CCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             ccccccccccccccccccccCEEEecCCCCCCCc
Confidence            9999999988899999999999999999998643

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9.2e-22  Score=205.46  Aligned_cols=183  Identities=25%  Similarity=0.208  Sum_probs=119.9

Q ss_pred             CCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECC
Q 041976          170 SSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLG  249 (901)
Q Consensus       170 ~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~  249 (901)
                      +.|++|++++|.+....+..+..+..++.++...+..+....                      |..+.++++|++|+++
T Consensus        56 ~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~----------------------~~~~~~l~~L~~L~l~  113 (284)
T d1ozna_          56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD----------------------PATFHGLGRLHTLHLD  113 (284)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC----------------------TTTTTTCTTCCEEECT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc----------------------chhhcccccCCEEecC
Confidence            445555555554444444444455555555544331222211                      2456666666666666


Q ss_pred             CCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEEECCCCCCCCCC
Q 041976          250 YSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFFDLSNNQLAGPI  328 (901)
Q Consensus       250 ~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~  328 (901)
                      +|.+....+..+...++|+.+++++|.+++..+..|..+++|++|++++|++.+..+. +.++++|+.+++++|++++..
T Consensus       114 ~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~  193 (284)
T d1ozna_         114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH  193 (284)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccC
Confidence            6666655555666667777777777777765566677777777777777777766555 667777777777777777777


Q ss_pred             CccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCcccc
Q 041976          329 PSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSG  374 (901)
Q Consensus       329 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  374 (901)
                      |..|..+++|++|++++|.+.+..+..|+.+++|++|++++|.+..
T Consensus       194 ~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             hhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            7777777788888888888877777777778888888887777654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=9.4e-21  Score=195.35  Aligned_cols=201  Identities=20%  Similarity=0.228  Sum_probs=131.5

Q ss_pred             CCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEE
Q 041976          570 IIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVL  649 (901)
Q Consensus       570 l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  649 (901)
                      ...+.+++.+++.++ .+|..+.   +++++|+|++|+|+++.+..|..+++|++|+|++|+|+...  .+..+++|++|
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L   82 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTL   82 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEE
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC---cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--ccccccccccc
Confidence            344555666666666 4555432   35666666666666555555666666666666666665321  23445555555


Q ss_pred             eCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCC
Q 041976          650 DIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEG  729 (901)
Q Consensus       650 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~  729 (901)
                      ++++|++... +..+..                          +++|+.|++++|.+.+..+..+               
T Consensus        83 ~Ls~N~l~~~-~~~~~~--------------------------l~~L~~L~l~~~~~~~~~~~~~---------------  120 (266)
T d1p9ag_          83 DLSHNQLQSL-PLLGQT--------------------------LPALTVLDVSFNRLTSLPLGAL---------------  120 (266)
T ss_dssp             ECCSSCCSSC-CCCTTT--------------------------CTTCCEEECCSSCCCCCCSSTT---------------
T ss_pred             cccccccccc-cccccc--------------------------ccccccccccccccceeecccc---------------
Confidence            5555555432 223344                          4455555555555443222110               


Q ss_pred             cccccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCC
Q 041976          730 KLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKL  809 (901)
Q Consensus       730 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L  809 (901)
                                                ..+.++++|++++|.++...+..+..+++|+.|++++|++++..+..|+.+++|
T Consensus       121 --------------------------~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L  174 (266)
T d1p9ag_         121 --------------------------RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL  174 (266)
T ss_dssp             --------------------------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred             --------------------------ccccccccccccccccceeccccccccccchhcccccccccccCcccccccccc
Confidence                                      014556777777777777777778888999999999999998888889999999


Q ss_pred             CEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCcc
Q 041976          810 ESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDG  845 (901)
Q Consensus       810 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  845 (901)
                      ++|||++|+|+ .+|+.+..+++|+.|+|++|++..
T Consensus       175 ~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         175 DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            99999999998 678888889999999999998763

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.3e-20  Score=189.62  Aligned_cols=177  Identities=24%  Similarity=0.250  Sum_probs=92.7

Q ss_pred             CCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECC
Q 041976          170 SSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLG  249 (901)
Q Consensus       170 ~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~  249 (901)
                      +++++|+|++|.+++..+..|.++++|++|+|++| .++ .++.+..+++|++|++++|.++.++..+..+++|++|+++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~-~l~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELT-KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCC-EEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccc-ccc-cccccccccccccccccccccccccccccccccccccccc
Confidence            45666666666666555556666677777777766 444 2333344445555555555555444555555555555555


Q ss_pred             CCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCC
Q 041976          250 YSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIP  329 (901)
Q Consensus       250 ~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~  329 (901)
                      ++.+.+..+..+..+.++++|++++|.++...+..+..+++|+++++++|+++                       +..+
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~-----------------------~~~~  165 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-----------------------ELPA  165 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-----------------------CCCT
T ss_pred             ccccceeeccccccccccccccccccccceeccccccccccchhccccccccc-----------------------ccCc
Confidence            55555444444444555555555555554444444444444444444444444                       4444


Q ss_pred             ccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCcc
Q 041976          330 SHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQL  372 (901)
Q Consensus       330 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  372 (901)
                      ..+..+++|++|+|++|+++ .+|..+..+++|+.|+|++|.+
T Consensus       166 ~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         166 GLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             cccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence            44444555555555555544 3444444555555555555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=1.4e-16  Score=171.54  Aligned_cols=138  Identities=23%  Similarity=0.320  Sum_probs=67.8

Q ss_pred             CCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECC
Q 041976          170 SSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLG  249 (901)
Q Consensus       170 ~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~  249 (901)
                      .++++|||+++.++ .+|+.   .++|++|++++| .++ .+|.  ...+|+.|++++|.++.+++.   .+.|++|+++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N-~l~-~lp~--~~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCN-SLT-ELPE--LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVS  106 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSS-CCS-SCCC--CCTTCCEEECCSSCCSCCCSC---CTTCCEEECC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCC-CCc-cccc--chhhhhhhhhhhcccchhhhh---cccccccccc
Confidence            45777787777765 35542   356666666666 554 3442  234556666666555544321   1245555555


Q ss_pred             CCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCC
Q 041976          250 YSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLA  325 (901)
Q Consensus       250 ~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~  325 (901)
                      +|.+. .+|. ++.+++|++|+++++.+... +.   ....+..+.+..+.... ...+..++.++.+++++|...
T Consensus       107 ~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~~-~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         107 NNQLE-KLPE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             SSCCS-SCCC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCS
T ss_pred             ccccc-cccc-hhhhccceeecccccccccc-cc---ccccccchhhccccccc-cccccccccceeccccccccc
Confidence            55554 2332 34555555555555554422 11   12334444444433321 122444445555555554443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=1.1e-16  Score=172.34  Aligned_cols=70  Identities=30%  Similarity=0.372  Sum_probs=44.6

Q ss_pred             CCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEE
Q 041976          546 PSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSL  625 (901)
Q Consensus       546 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  625 (901)
                      +++|++|++++|+++. +|.   .+++|+.|++++|+++ .+|..    .++|++|++++|+++ .+|..   ..+|+.|
T Consensus       283 ~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~L~-~l~~~----~~~L~~L~L~~N~L~-~lp~~---~~~L~~L  349 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHLA-EVPEL----PQNLKQLHVEYNPLR-EFPDI---PESVEDL  349 (353)
T ss_dssp             CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCS-SCCCC---CTTCCEE
T ss_pred             CCCCCEEECCCCccCc-ccc---ccCCCCEEECCCCcCC-ccccc----cCCCCEEECcCCcCC-CCCcc---ccccCee
Confidence            4567777777777663 343   2567778888888877 55542    237888888888877 44532   2356666


Q ss_pred             Ecc
Q 041976          626 NLN  628 (901)
Q Consensus       626 ~Ls  628 (901)
                      .+.
T Consensus       350 ~~~  352 (353)
T d1jl5a_         350 RMN  352 (353)
T ss_dssp             ECC
T ss_pred             ECc
Confidence            553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=2.7e-17  Score=164.76  Aligned_cols=202  Identities=18%  Similarity=0.293  Sum_probs=130.6

Q ss_pred             EECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCc
Q 041976          576 LDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIK  655 (901)
Q Consensus       576 L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~  655 (901)
                      ++++++++++.+  ....+. +|+.|++.+|.++..  ..+..+++|++|++++|++++..|  +..+++++++++++|.
T Consensus        24 ~~l~~~~~~d~~--~~~~l~-~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLD-GITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP   96 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHH-TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred             HHhCCCCcCCcC--CHHHcC-CcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--cccccccccccccccc
Confidence            344555555433  223333 666666666666543  246666666666666666664432  6666667777776666


Q ss_pred             CccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccC
Q 041976          656 INDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLG  735 (901)
Q Consensus       656 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~  735 (901)
                      ++..  ..+.++++|+++++++|...+..+    +...+.++.+.++++.+....+-                       
T Consensus        97 ~~~i--~~l~~l~~L~~l~l~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~-----------------------  147 (227)
T d1h6ua2          97 LKNV--SAIAGLQSIKTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQITNISPL-----------------------  147 (227)
T ss_dssp             CSCC--GGGTTCTTCCEEECTTSCCCCCGG----GTTCTTCCEEECCSSCCCCCGGG-----------------------
T ss_pred             cccc--ccccccccccccccccccccccch----hccccchhhhhchhhhhchhhhh-----------------------
Confidence            6543  235666777777777766543221    23456677777777665532210                       


Q ss_pred             ccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCC
Q 041976          736 EEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLS  815 (901)
Q Consensus       736 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls  815 (901)
                                          ...+.+++|++++|.+++..+  ++++++|++|+|++|++++..  .++++++|++|+|+
T Consensus       148 --------------------~~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls  203 (227)
T d1h6ua2         148 --------------------AGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLK  203 (227)
T ss_dssp             --------------------GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECT
T ss_pred             --------------------ccccccccccccccccccchh--hcccccceecccCCCccCCCh--hhcCCCCCCEEECc
Confidence                                014567788888888765433  788899999999999988643  38888999999999


Q ss_pred             CCccCCCCCcCCcCCCCCCeeeCC
Q 041976          816 SNNVAGKIPKPLTSLTSLSVLNLS  839 (901)
Q Consensus       816 ~N~l~~~~p~~l~~l~~L~~L~Ls  839 (901)
                      +|++++..  .++++++|++|+++
T Consensus       204 ~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         204 NNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             TSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             CCcCCCCc--ccccCCCCCEEEee
Confidence            99988653  37888999999886

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.4e-17  Score=168.98  Aligned_cols=221  Identities=15%  Similarity=0.117  Sum_probs=164.0

Q ss_pred             CEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCccccc-CCccccCCCcccEEeCC
Q 041976          574 DVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGA-IPQSLVNCTKVEVLDIG  652 (901)
Q Consensus       574 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~l~  652 (901)
                      +.++.++..++ .+|..+.   +++++|++++|+++.+.+.+|.++++|++|++++|.+... .+..|.+++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            56777777777 7776553   4899999999999877777899999999999999988764 45578889999999876


Q ss_pred             C-CcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcc
Q 041976          653 N-IKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKL  731 (901)
Q Consensus       653 ~-n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~  731 (901)
                      . |++....+..|.++++|+++++++|.+... +.......+..+..+..+++.+...-+..                  
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~~~l~~l~~~~~~n~~l~~i~~~~------------------  147 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHL-PDVHKIHSLQKVLLDIQDNINIHTIERNS------------------  147 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSC-CCCTTTCBSSCEEEEEESCTTCCEECTTS------------------
T ss_pred             ccccccccccccccccccccccccchhhhccc-ccccccccccccccccccccccccccccc------------------
Confidence            4 678888888889999999999999988643 22222344555666666666554321111                  


Q ss_pred             cccCccceeceeEEeecchhHHHhhhccceeEEEccccccccccchhhhccCCCC-eEeCCCCcCCCCCCccccCCCCCC
Q 041976          732 RYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFDGEISQVIGKLHSLR-LLNLSHNHFTGQIPSSLGNLAKLE  810 (901)
Q Consensus       732 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~L~~L~  810 (901)
                             +.+               ....++.|++++|+++...+..+. ..+++ .+++++|+++.+.+..|.++++|+
T Consensus       148 -------~~~---------------~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~  204 (242)
T d1xwdc1         148 -------FVG---------------LSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPV  204 (242)
T ss_dssp             -------STT---------------SBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCS
T ss_pred             -------ccc---------------ccccceeeeccccccccccccccc-chhhhccccccccccccccHHHhcCCCCCC
Confidence                   100               124678899999999865555554 44544 456788899977777899999999


Q ss_pred             EEeCCCCccCCCCCcCCcCCCCCCeeeCCC
Q 041976          811 SLDLSSNNVAGKIPKPLTSLTSLSVLNLSH  840 (901)
Q Consensus       811 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  840 (901)
                      +|||++|+|+...+..|.++++|+++++.+
T Consensus       205 ~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         205 ILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             EEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             EEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            999999999977777888888888887754

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.8e-19  Score=202.15  Aligned_cols=107  Identities=19%  Similarity=0.223  Sum_probs=57.6

Q ss_pred             CcceeecCCCCCcc--CCccccCCCCcCEEECCCCCCcc----CCCccccCCCCCCEEECCCCcCCCC----CCcccc-C
Q 041976          219 PIEYLDVSETSFSE--LPDSIGNLKLLGRLMLGYSQFVG----PVPASLGNLTQLTLLHLMHNNFSGH----IPSSLS-N  287 (901)
Q Consensus       219 ~L~~L~Ls~~~l~~--lp~~l~~l~~L~~L~L~~n~~~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~-~  287 (901)
                      +|++||+++++++.  +.+.+..++++++|+|++|.++.    .++..+..+++|++|++++|.++..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            45666666666653  22345566777777777776652    2334455666777777777666421    111221 1


Q ss_pred             CCCCCEEEccCCcCcccC----CC-CCCCCCCCEEECCCCCCC
Q 041976          288 LVQLTYLDLSSNSFFGEI----PD-IFNLTQVSFFDLSNNQLA  325 (901)
Q Consensus       288 l~~L~~L~Ls~n~l~~~~----~~-~~~l~~L~~L~l~~n~l~  325 (901)
                      ..+|++|++++|.++...    +. +..+++|++|++++|.+.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            235666666666654321    11 344555555555555543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.9e-18  Score=193.69  Aligned_cols=392  Identities=19%  Similarity=0.141  Sum_probs=202.5

Q ss_pred             CCCEEEccCccCCCCC-chhhhcccccCceecccCcCCCccc---hhhhhhcCCCcEEEccCCccccccccccCCCCCCc
Q 041976          383 SLQNIYLSNNRLQGSI-PSSIFELVNLTDLQLDSNNFSGIAE---PYMFAKLIKLKYLYLSHNSLSLGNTFKIDSPFPKF  458 (901)
Q Consensus       383 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L  458 (901)
                      +|+.||++++++++.. ...+..++++++|+|++|.++....   ...+..+++|++|++++|.++......        
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~--------   74 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC--------   74 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH--------
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHH--------
Confidence            4677777777776532 3334556677777777776653211   123455666666666666554322111        


Q ss_pred             cEEecCCcCCCCCChhhc-cCCCCCEEeCCCCcccccCChhhhh--cCCCCccEEEcCCCccCCcccCCCC-CCceeecc
Q 041976          459 SYLSLSACNISAFPRFLR-TQDELSYLDLSENKIDGQIPSWISE--IGKDSLSYVNLSHNFITKMKQIPWK-NLGYLDLR  534 (901)
Q Consensus       459 ~~L~l~~~~l~~lp~~l~-~~~~L~~L~ls~n~l~~~~p~~~~~--~~~~~L~~L~ls~n~l~~~~~~~~~-~L~~L~l~  534 (901)
                                  +...+. ...+|++|++++|++++.....+..  ...++|++|++++|.++......+. .+.     
T Consensus        75 ------------l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~-----  137 (460)
T d1z7xw1          75 ------------VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL-----  137 (460)
T ss_dssp             ------------HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT-----
T ss_pred             ------------HHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhccc-----
Confidence                        111222 2346889999999887653332211  3567788888888876543221100 000     


Q ss_pred             CccccCCCCCCCCCCcEEEccCCccccc----cccccccCCCCCEEECCCCcCccc----CCcchhcCCCCccEEECCCC
Q 041976          535 SNLLQGPLPVPPSSLRVLLISNNQFTGE----IIHSICDIIALDVLDLSNNRLNGT----IPECIGNFSPSLSVLDLRNN  606 (901)
Q Consensus       535 ~n~l~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~~~~~L~~L~L~~n  606 (901)
                               ...............+...    ....+.....++.++++++.+...    ....+.........+++..+
T Consensus       138 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~  208 (460)
T d1z7xw1         138 ---------DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC  208 (460)
T ss_dssp             ---------STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS
T ss_pred             ---------ccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                     0001111222222221111    111223345566666666654321    11111112224555666666


Q ss_pred             cccccC----CcCccCCCccCEEEccCCcccc-----cCCccccCCCcccEEeCCCCcCccCc----cccccCCCCCcEE
Q 041976          607 RLNGSI----PGTFAESNWLRSLNLNNNELGG-----AIPQSLVNCTKVEVLDIGNIKINDAF----PYWLGNLPELQVL  673 (901)
Q Consensus       607 ~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~l~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L  673 (901)
                      .+....    ...+.....++.+++++|++..     ..+........++.+++++|.+....    ...+...+.++.+
T Consensus       209 ~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l  288 (460)
T d1z7xw1         209 GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL  288 (460)
T ss_dssp             CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEE
T ss_pred             cccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccccccccccc
Confidence            543211    1123344566677776666532     12223344566777777777664332    2233456667777


Q ss_pred             EccCCcCcccCCCCC---CCCCCCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecch
Q 041976          674 VLRSNKFHGSVREFE---PKESFPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGT  750 (901)
Q Consensus       674 ~L~~n~~~~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~  750 (901)
                      ++++|++........   .......|+.+++++|.++......+ .                                  
T Consensus       289 ~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l-~----------------------------------  333 (460)
T d1z7xw1         289 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF-S----------------------------------  333 (460)
T ss_dssp             ECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH-H----------------------------------
T ss_pred             ccccccccccccchhhccccccccccccccccccchhhhhhhhc-c----------------------------------
Confidence            777776642111000   01223467777777776653221111 0                                  


Q ss_pred             hHHHhhhccceeEEEccccccccc----cchhhh-ccCCCCeEeCCCCcCCCC----CCccccCCCCCCEEeCCCCccCC
Q 041976          751 EIEMQKILTVFTTIDFSSNGFDGE----ISQVIG-KLHSLRLLNLSHNHFTGQ----IPSSLGNLAKLESLDLSSNNVAG  821 (901)
Q Consensus       751 ~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~-~l~~L~~L~Ls~N~l~~~----~p~~l~~L~~L~~L~Ls~N~l~~  821 (901)
                        .+....++|++|||++|++++.    ++..+. ..+.|++|+|++|.|+..    +++.+...++|++|||++|+|+.
T Consensus       334 --~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         334 --SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             --HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             --cccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence              0111245678888888888653    333333 356788888888888742    34556667888888888888875


Q ss_pred             CCCcCC----c-CCCCCCeeeCCCCcCcc
Q 041976          822 KIPKPL----T-SLTSLSVLNLSHNRLDG  845 (901)
Q Consensus       822 ~~p~~l----~-~l~~L~~L~Ls~N~l~g  845 (901)
                      .....+    . +.+.|+.|++++|++..
T Consensus       412 ~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         412 AGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             HHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            332222    2 33478888888888764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=2.7e-16  Score=157.42  Aligned_cols=188  Identities=23%  Similarity=0.302  Sum_probs=99.1

Q ss_pred             cCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEE
Q 041976          238 GNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFF  317 (901)
Q Consensus       238 ~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L  317 (901)
                      ..+.+|++|++.+|.++. + ..+.++++|++|++++|.+++..|  +..+++|+++++++|.++ .++.+.++++|+.+
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~~l~~l~~L~~l  112 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSAIAGLQSIKTL  112 (227)
T ss_dssp             HHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCGGGTTCTTCCEE
T ss_pred             HHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccc-cccccccccccccc
Confidence            344555555555555542 2 235555555555555555543322  455555555555555544 23334455555555


Q ss_pred             ECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCC
Q 041976          318 DLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGS  397 (901)
Q Consensus       318 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~  397 (901)
                      +++++...+.  ..+...+.++.+.++.+.+....  .+...++|++|++++|.+.+..+...+++|+.|++++|++++.
T Consensus       113 ~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l  188 (227)
T d1h6ua2         113 DLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI  188 (227)
T ss_dssp             ECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred             cccccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccchhhcccccceecccCCCccCCC
Confidence            5555544422  22344455555555555544321  2445555566666555554433333455566666666655532


Q ss_pred             CchhhhcccccCceecccCcCCCccchhhhhhcCCCcEEEcc
Q 041976          398 IPSSIFELVNLTDLQLDSNNFSGIAEPYMFAKLIKLKYLYLS  439 (901)
Q Consensus       398 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~  439 (901)
                       + .++.+++|++|++++|+++++.   .++++++|++|+++
T Consensus       189 -~-~l~~l~~L~~L~Ls~N~lt~i~---~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         189 -S-PLASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLT  225 (227)
T ss_dssp             -G-GGGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEE
T ss_pred             -h-hhcCCCCCCEEECcCCcCCCCc---ccccCCCCCEEEee
Confidence             2 3666677777777777766652   26666667766665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=2.6e-16  Score=152.64  Aligned_cols=135  Identities=25%  Similarity=0.317  Sum_probs=102.0

Q ss_pred             CEEECCCCcCcccCCcchhcCCCCccEEECCCCcccc-cCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCC
Q 041976          574 DVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNG-SIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIG  652 (901)
Q Consensus       574 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  652 (901)
                      ++++.++++++ .+|..+   ++++++|+|++|+|++ ..+..|..+++|++|+|++|++.+..+..|..+++|++|+++
T Consensus        11 ~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            46777777777 667654   2478888888888865 345667788888888888888888878888888888888888


Q ss_pred             CCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcCCCccccCCcHHH
Q 041976          653 NIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLSINNFSGYLPERF  714 (901)
Q Consensus       653 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~  714 (901)
                      +|++....+.+|.++++|++|+|++|++.+..+..+  ..+++|++|+|++|++.+..+..+
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f--~~l~~L~~l~L~~N~~~~~~~~~~  146 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHLAW  146 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGGHH
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHh--cCCcccccccccccccccccchHH
Confidence            888888778888888888888888888876655543  667888888888888876554443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.9e-16  Score=157.32  Aligned_cols=203  Identities=17%  Similarity=0.088  Sum_probs=115.5

Q ss_pred             CCCCcEEEccCCccccccccccccCCCCCEEECCCCcCcccCCcc-hhcCCCCccEEECC-CCcccccCCcCccCCCccC
Q 041976          546 PSSLRVLLISNNQFTGEIIHSICDIIALDVLDLSNNRLNGTIPEC-IGNFSPSLSVLDLR-NNRLNGSIPGTFAESNWLR  623 (901)
Q Consensus       546 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~~~~~L~~L~L~-~n~l~~~~~~~~~~l~~L~  623 (901)
                      ++++++|++++|+++...+..|.++++|++|++++|.+...++.. +..+. .++++.+. .|.+....+..|.++++|+
T Consensus        28 ~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~-~l~~l~~~~~n~l~~~~~~~~~~l~~L~  106 (242)
T d1xwdc1          28 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP-KLHEIRIEKANNLLYINPEAFQNLPNLQ  106 (242)
T ss_dssp             CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCT-TCCEEEEECCTTCCEECTTSEECCTTCC
T ss_pred             CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccc-cccccccccccccccccccccccccccc
Confidence            345666666666666555555666666666666666665444332 33333 55555543 2455555555556666666


Q ss_pred             EEEccCCcccccCCc-cccCCCcccEEeCCCCcCccCccccccCCCCCcEEEccCCcCcccCCCCCCCCCCCCCcEEEcC
Q 041976          624 SLNLNNNELGGAIPQ-SLVNCTKVEVLDIGNIKINDAFPYWLGNLPELQVLVLRSNKFHGSVREFEPKESFPKLRILDLS  702 (901)
Q Consensus       624 ~L~Ls~N~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~Ls  702 (901)
                      ++++++|++....+. .+..+..+..+...++.+....+..+.++                         ...++.++++
T Consensus       107 ~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~-------------------------~~~l~~L~l~  161 (242)
T d1xwdc1         107 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL-------------------------SFESVILWLN  161 (242)
T ss_dssp             EEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTS-------------------------BSSCEEEECC
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccccccc-------------------------cccceeeecc
Confidence            666666655432221 12233334444444444433333322222                         2345666666


Q ss_pred             CCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccce-eEEEccccccccccchhhhc
Q 041976          703 INNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVF-TTIDFSSNGFDGEISQVIGK  781 (901)
Q Consensus       703 ~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~l~~  781 (901)
                      +|+++...+ ..+.                                         ...+ +.+++++|+++...+..|.+
T Consensus       162 ~n~l~~i~~-~~~~-----------------------------------------~~~l~~~~~l~~n~l~~l~~~~f~~  199 (242)
T d1xwdc1         162 KNGIQEIHN-CAFN-----------------------------------------GTQLDELNLSDNNNLEELPNDVFHG  199 (242)
T ss_dssp             SSCCCEECT-TTTT-----------------------------------------TCCEEEEECTTCTTCCCCCTTTTTT
T ss_pred             ccccccccc-cccc-----------------------------------------chhhhccccccccccccccHHHhcC
Confidence            666653222 1110                                         1233 34456778888666677899


Q ss_pred             cCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCC
Q 041976          782 LHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSS  816 (901)
Q Consensus       782 l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~  816 (901)
                      +++|++|+|++|+|+...+..|.++++|+.|++.+
T Consensus       200 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             SCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             CCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            99999999999999977777788888887776643

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=1.4e-15  Score=149.77  Aligned_cols=122  Identities=32%  Similarity=0.368  Sum_probs=52.7

Q ss_pred             cCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEE
Q 041976          238 GNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFF  317 (901)
Q Consensus       238 ~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L  317 (901)
                      +.+++|++|++++|++++ +| .+.++++|+.|++++|.+.. + ..+..+++++.+++++|.+++ .+.+..+++|+++
T Consensus        87 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~-~~~~~~l~~L~~l  161 (210)
T d1h6ta2          87 ANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTL  161 (210)
T ss_dssp             TTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEE
T ss_pred             ccCccccccccccccccc-cc-cccccccccccccccccccc-c-ccccccccccccccccccccc-ccccccccccccc
Confidence            333444444444444332 22 23444444444444444331 1 224444444444444444432 1123344445555


Q ss_pred             ECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEcc
Q 041976          318 DLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLS  368 (901)
Q Consensus       318 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  368 (901)
                      ++++|++++. + .+.++++|++|++++|.++. ++ .+..+++|++|+++
T Consensus       162 ~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         162 SLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             ECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             cccccccccc-c-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence            5555544431 1 24455555555555555542 22 35555555555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=2.4e-15  Score=146.65  Aligned_cols=163  Identities=25%  Similarity=0.344  Sum_probs=87.6

Q ss_pred             ccCccCceEeCCCCCCCCCcCCccccCCCCCceeeCCCCcCCCCCCcccccccccccchhhcccCCCCccEEEcCCCcCC
Q 041976          104 FHLLHLQTLNLSHNDFDYSEISSGFSRFRNLTHFSLSDSNINCKIPYEISFLKMSTVVLDSLKNLSSSLTSLSLSDCILQ  183 (901)
Q Consensus       104 ~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~~~~~~~~~~~l~~~L~~L~Ls~~~~~  183 (901)
                      ..++++++|+++++.++.  + +.+..+++|++|++++|.+++. + .++.+              ++|++|++++|.+.
T Consensus        37 ~~l~~l~~L~l~~~~i~~--l-~~l~~l~nL~~L~Ls~N~l~~~-~-~l~~l--------------~~L~~L~l~~n~~~   97 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTDI-T-PLKNL--------------TKLVDILMNNNQIA   97 (199)
T ss_dssp             HHHTTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCC-G-GGTTC--------------TTCCEEECCSSCCC
T ss_pred             HHhcCCCEEECCCCCCCC--c-cccccCCCcCcCccccccccCc-c-cccCC--------------cccccccccccccc
Confidence            456677777777776655  2 2466677777777777766542 2 25555              66666666666654


Q ss_pred             CCCccccCCCCCCCEEeCCCCCCCCccCCCCCCCCCcceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccC
Q 041976          184 GNFPINIFHLPNPQMIRLSQNPSLAGKFPANNWTSPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGN  263 (901)
Q Consensus       184 ~~~p~~l~~l~~L~~L~L~~n~~l~~~~~~~~~~~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~  263 (901)
                      .. + .+.++++|+.|++++| ...                       .+ +.+..+++|++|++++|.+.. + ..+..
T Consensus        98 ~~-~-~l~~l~~L~~L~l~~~-~~~-----------------------~~-~~~~~l~~L~~L~l~~n~l~~-~-~~l~~  148 (199)
T d2omxa2          98 DI-T-PLANLTNLTGLTLFNN-QIT-----------------------DI-DPLKNLTNLNRLELSSNTISD-I-SALSG  148 (199)
T ss_dssp             CC-G-GGTTCTTCSEEECCSS-CCC-----------------------CC-GGGTTCTTCSEEECCSSCCCC-C-GGGTT
T ss_pred             cc-c-cccccccccccccccc-ccc-----------------------cc-cccchhhhhHHhhhhhhhhcc-c-ccccc
Confidence            32 2 3556666666666665 332                       22 234445555555555555432 1 23445


Q ss_pred             CCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEE
Q 041976          264 LTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFF  317 (901)
Q Consensus       264 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L  317 (901)
                      +++|+.|++.+|.+++. + .++++++|++|++++|++++ ++.+..+++|++|
T Consensus       149 ~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~~l~~L~~L~~L  199 (199)
T d2omxa2         149 LTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-ISVLAKLTNLESL  199 (199)
T ss_dssp             CTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEE
T ss_pred             cccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC-CccccCCCCCCcC
Confidence            55555555555555432 1 24555555555555555543 2334455555543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=6e-16  Score=150.08  Aligned_cols=170  Identities=20%  Similarity=0.258  Sum_probs=98.2

Q ss_pred             eeccCccccCCCCCCCCCCcEEEccCCcccc-ccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCccc
Q 041976          531 LDLRSNLLQGPLPVPPSSLRVLLISNNQFTG-EIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLN  609 (901)
Q Consensus       531 L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~  609 (901)
                      ++++++.++......++++++|++++|+|++ ..+..|.++++|++|++++|.+.+..+..+..+. +|++|++++|+++
T Consensus        13 v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~-~L~~L~Ls~N~l~   91 (192)
T d1w8aa_          13 VDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-HIQELQLGENKIK   91 (192)
T ss_dssp             EECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSCCCC
T ss_pred             EEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccc-ccceeeecccccc
Confidence            3444444443322234566666666666654 3344556677777777777777655555555554 7777777777777


Q ss_pred             ccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCCCCcCccCccc-cccCCCCCcEEEccCCcCcccCCCCC
Q 041976          610 GSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIGNIKINDAFPY-WLGNLPELQVLVLRSNKFHGSVREFE  688 (901)
Q Consensus       610 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~~~~~~~~~~  688 (901)
                      .+.+.+|.++++|++|+|++|+|+++.++.|..+++|++|++++|.+...... ++.  ..++.+.+..+.+....|   
T Consensus        92 ~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~p---  166 (192)
T d1w8aa_          92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAP---  166 (192)
T ss_dssp             EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSS---
T ss_pred             ccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeCCC---
Confidence            66666677777777777777777766666677777777777777766543221 111  123334444444443222   


Q ss_pred             CCCCCCCCcEEEcCCCcccc
Q 041976          689 PKESFPKLRILDLSINNFSG  708 (901)
Q Consensus       689 ~~~~l~~L~~L~Ls~n~l~~  708 (901)
                        ..+..++.++++.|.+..
T Consensus       167 --~~l~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         167 --SKVRDVQIKDLPHSEFKC  184 (192)
T ss_dssp             --TTTTTSBGGGSCTTTCCC
T ss_pred             --hhhcCCEeeecCHhhCcC
Confidence              234455555666665543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=5.1e-15  Score=144.29  Aligned_cols=160  Identities=29%  Similarity=0.302  Sum_probs=73.0

Q ss_pred             CCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECc
Q 041976          265 TQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLN  344 (901)
Q Consensus       265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  344 (901)
                      .++++|++++|.++..  +.++.+++|++|++++|++++.. .+.++++|++|++++|.+.. ++ .++.+++|+.++++
T Consensus        40 ~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~-~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~  114 (199)
T d2omxa2          40 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLF  114 (199)
T ss_dssp             TTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECC
T ss_pred             cCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc-cccCCccccccccccccccc-cc-cccccccccccccc
Confidence            3444444444444321  12344444444444444444322 14444444444444444432 11 24444445555554


Q ss_pred             CCcCcccCChhhcCCCCCcEEEccCCccccccCCCCCCCCCEEEccCccCCCCCchhhhcccccCceecccCcCCCccch
Q 041976          345 NNSFSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLTDLQLDSNNFSGIAEP  424 (901)
Q Consensus       345 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  424 (901)
                      ++.+...  ..+..+++|+.|++++|++........+++++.|++.+|++++.  ..++++++|++|++++|+++++   
T Consensus       115 ~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~i---  187 (199)
T d2omxa2         115 NNQITDI--DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVSDI---  187 (199)
T ss_dssp             SSCCCCC--GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC---
T ss_pred             ccccccc--cccchhhhhHHhhhhhhhhcccccccccccccccccccccccCC--ccccCCCCCCEEECCCCCCCCC---
Confidence            4444321  12444455555555555443322222344555555555555432  1355666666666666666654   


Q ss_pred             hhhhhcCCCcEE
Q 041976          425 YMFAKLIKLKYL  436 (901)
Q Consensus       425 ~~l~~l~~L~~L  436 (901)
                      ..++++++|++|
T Consensus       188 ~~l~~L~~L~~L  199 (199)
T d2omxa2         188 SVLAKLTNLESL  199 (199)
T ss_dssp             GGGGGCTTCSEE
T ss_pred             ccccCCCCCCcC
Confidence            235566666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=6.3e-15  Score=144.93  Aligned_cols=144  Identities=27%  Similarity=0.341  Sum_probs=73.7

Q ss_pred             cceeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCC
Q 041976          220 IEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSN  299 (901)
Q Consensus       220 L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  299 (901)
                      |++|++++|.++.++ .+..+++|++|++++|++++. + .++.+++|++|++++|++++ +| .+..+++|+.|++++|
T Consensus        48 L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~  122 (210)
T d1h6ta2          48 IDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHN  122 (210)
T ss_dssp             CCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTS
T ss_pred             ccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-cccccccccccccccc
Confidence            333333344444332 355666666666666666542 2 34566666666666666653 22 3555666666666666


Q ss_pred             cCcccCCCCCCCCCCCEEECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcCCCCCcEEEccCCccc
Q 041976          300 SFFGEIPDIFNLTQVSFFDLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFSLPLLEYVRLSDNQLS  373 (901)
Q Consensus       300 ~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  373 (901)
                      .+.. ++.+..++.++.+++++|.+++  +..+..+++|+++++++|++++. + .+.++++|++|++++|+++
T Consensus       123 ~~~~-~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         123 GISD-INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             CCCC-CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred             cccc-cccccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCC
Confidence            5542 2334455555555555555542  22344455555555555555432 1 2444444554444444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=8.2e-15  Score=151.46  Aligned_cols=60  Identities=20%  Similarity=0.242  Sum_probs=30.4

Q ss_pred             ccceeEEEcccc-ccccccchhhhccCCCCeEeCCCC-cCCCCCCccccCCCCCCEEeCCCC
Q 041976          758 LTVFTTIDFSSN-GFDGEISQVIGKLHSLRLLNLSHN-HFTGQIPSSLGNLAKLESLDLSSN  817 (901)
Q Consensus       758 l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~L~~L~~L~Ls~N  817 (901)
                      +++|++|++++| .+++.....+.++++|++|+|++| .+++.....++++++|+.|+++++
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            344555555543 344444445555555555555553 344444444555555555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4e-15  Score=153.80  Aligned_cols=186  Identities=16%  Similarity=0.115  Sum_probs=92.6

Q ss_pred             CCccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCCCCCcc-CCC-CCCCCCcceeecCCCC-Cc--cCCcccc-CCCCc
Q 041976          170 SSLTSLSLSDCILQGNFPINIFHLPNPQMIRLSQNPSLAGK-FPA-NNWTSPIEYLDVSETS-FS--ELPDSIG-NLKLL  243 (901)
Q Consensus       170 ~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~~l~~~-~~~-~~~~~~L~~L~Ls~~~-l~--~lp~~l~-~l~~L  243 (901)
                      ++|++|++++|.+.+..+..++++++|++|++++|..++.. +.. ...+++|++|++++|. ++  .++..+. ..++|
T Consensus        71 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L  150 (284)
T d2astb2          71 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  150 (284)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccccccc
Confidence            44555555555444444444445555555555554333211 111 1234455555555432 22  1112222 23567


Q ss_pred             CEEECCCCC--CccC-CCccccCCCCCCEEECCCC-cCCCCCCccccCCCCCCEEEccCC-cCcccCCC-CCCCCCCCEE
Q 041976          244 GRLMLGYSQ--FVGP-VPASLGNLTQLTLLHLMHN-NFSGHIPSSLSNLVQLTYLDLSSN-SFFGEIPD-IFNLTQVSFF  317 (901)
Q Consensus       244 ~~L~L~~n~--~~~~-~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~~~-~~~l~~L~~L  317 (901)
                      +.|+++++.  ++.. +.....++++|++|++++| .+++.....+.++++|++|++++| .+++.... +.++++|++|
T Consensus       151 ~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L  230 (284)
T d2astb2         151 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL  230 (284)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             chhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEE
Confidence            777776542  2221 2222345677777777765 355555666777777777777775 34433222 5667777777


Q ss_pred             ECCCCCCCCCCCccccCCcCCcEEECcCCcCcccCChhhcC
Q 041976          318 DLSNNQLAGPIPSHGSRLQNLVLIRLNNNSFSGTIPSWLFS  358 (901)
Q Consensus       318 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  358 (901)
                      +++++--.+.++.....+++|+   +..+.++...+..++.
T Consensus       231 ~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         231 QVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGN  268 (284)
T ss_dssp             ECTTSSCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSS
T ss_pred             eeeCCCCHHHHHHHHHhCcccc---ccCccCCCCCCCccCc
Confidence            7777622222222223455544   4556666555544443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.36  E-value=3.8e-14  Score=151.39  Aligned_cols=243  Identities=16%  Similarity=0.182  Sum_probs=135.6

Q ss_pred             ccccCCCCCEEECCCCcCcccCC----cchhcCCCCccEEECCCCccccc----------CCcCccCCCccCEEEccCCc
Q 041976          566 SICDIIALDVLDLSNNRLNGTIP----ECIGNFSPSLSVLDLRNNRLNGS----------IPGTFAESNWLRSLNLNNNE  631 (901)
Q Consensus       566 ~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~~~~~L~~L~L~~n~l~~~----------~~~~~~~l~~L~~L~Ls~N~  631 (901)
                      .+.....+++|++++|.+.....    ..+.... +|+.++++++.....          +...+..+++|++|+|++|.
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCC-CCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            34445556666666665543211    1222222 566666655543211          11223445667777777776


Q ss_pred             cccc----CCccccCCCcccEEeCCCCcCccCcccc-------------ccCCCCCcEEEccCCcCcccCCCCC--CCCC
Q 041976          632 LGGA----IPQSLVNCTKVEVLDIGNIKINDAFPYW-------------LGNLPELQVLVLRSNKFHGSVREFE--PKES  692 (901)
Q Consensus       632 l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~-------------l~~l~~L~~L~L~~n~~~~~~~~~~--~~~~  692 (901)
                      ++..    +...+..+++|++|++++|.+.......             ....+.|+.+++++|.+........  ....
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~  184 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  184 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             cccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhh
Confidence            6543    2223445666777777776653321111             1245667777777766542111000  0123


Q ss_pred             CCCCcEEEcCCCccccCCcHHHHHhhHhhhcccccCCcccccCccceeceeEEeecchhHHHhhhccceeEEEccccccc
Q 041976          693 FPKLRILDLSINNFSGYLPERFLENLNAMRNVSADEGKLRYLGEEYYQDSVVVTLKGTEIEMQKILTVFTTIDFSSNGFD  772 (901)
Q Consensus       693 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  772 (901)
                      .+.|++|++++|.+...   .....+.                                 ......+.|+.|++++|.++
T Consensus       185 ~~~L~~L~L~~n~i~~~---g~~~~l~---------------------------------~~l~~~~~L~~L~Ls~N~i~  228 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPE---GIEHLLL---------------------------------EGLAYCQELKVLDLQDNTFT  228 (344)
T ss_dssp             CTTCCEEECCSSCCCHH---HHHHHHH---------------------------------TTGGGCTTCCEEECCSSCCH
T ss_pred             hhhhccccccccccccc---ccccchh---------------------------------hhhcchhhhccccccccccc
Confidence            45677777777765421   1100000                                 00112467888999999886


Q ss_pred             cc----cchhhhccCCCCeEeCCCCcCCCCCCc----cccC--CCCCCEEeCCCCccCCC----CCcCCc-CCCCCCeee
Q 041976          773 GE----ISQVIGKLHSLRLLNLSHNHFTGQIPS----SLGN--LAKLESLDLSSNNVAGK----IPKPLT-SLTSLSVLN  837 (901)
Q Consensus       773 ~~----~~~~l~~l~~L~~L~Ls~N~l~~~~p~----~l~~--L~~L~~L~Ls~N~l~~~----~p~~l~-~l~~L~~L~  837 (901)
                      ..    +...+..+++|++|+|++|.|++....    .+..  ...|++||+++|+|+..    +...+. ++++|++|+
T Consensus       229 ~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~  308 (344)
T d2ca6a1         229 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE  308 (344)
T ss_dssp             HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             ccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEE
Confidence            43    455677889999999999998764322    2332  36799999999998753    223332 567899999


Q ss_pred             CCCCcCcc
Q 041976          838 LSHNRLDG  845 (901)
Q Consensus       838 Ls~N~l~g  845 (901)
                      |++|++..
T Consensus       309 l~~N~~~~  316 (344)
T d2ca6a1         309 LNGNRFSE  316 (344)
T ss_dssp             CTTSBSCT
T ss_pred             CCCCcCCC
Confidence            99999864

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=1.7e-12  Score=114.58  Aligned_cols=100  Identities=21%  Similarity=0.338  Sum_probs=51.8

Q ss_pred             eeecCCCCCccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcC
Q 041976          222 YLDVSETSFSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSF  301 (901)
Q Consensus       222 ~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  301 (901)
                      +|++++|+++.++ .++.+++|++|++++|.++ .+|..++.+++|++|++++|.+++ +| .+..+++|++|++++|++
T Consensus         2 ~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           2 VLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             EEECTTSCCSSCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCC
T ss_pred             EEEcCCCCCCCCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCcc
Confidence            4445555555443 2455555555555555554 344455555555555555555553 22 355555555555555555


Q ss_pred             cccCC--CCCCCCCCCEEECCCCCCC
Q 041976          302 FGEIP--DIFNLTQVSFFDLSNNQLA  325 (901)
Q Consensus       302 ~~~~~--~~~~l~~L~~L~l~~n~l~  325 (901)
                      .....  .+..+++|++|++++|.++
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCC
Confidence            53322  1445555556666555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=1.6e-12  Score=114.76  Aligned_cols=118  Identities=25%  Similarity=0.269  Sum_probs=65.2

Q ss_pred             CEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCCCCCCCCEEECCCCC
Q 041976          244 GRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIFNLTQVSFFDLSNNQ  323 (901)
Q Consensus       244 ~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~  323 (901)
                      |+|++++|+++ .++ .+.++++|++|++++|.++ .+|..++.+++|++|++++|.+++. +.+..+++|++|++++|+
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-CccccccccCeEECCCCc
Confidence            45666666665 233 3556666666666666665 3455566666666666666666532 345566666666666666


Q ss_pred             CCCCC-CccccCCcCCcEEECcCCcCccc---CChhhcCCCCCcEE
Q 041976          324 LAGPI-PSHGSRLQNLVLIRLNNNSFSGT---IPSWLFSLPLLEYV  365 (901)
Q Consensus       324 l~~~~-~~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L  365 (901)
                      +.... ...+..+++|++|++++|.++..   .......+|+|+.+
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            65322 23455666666666666665422   12223345555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=5.4e-13  Score=124.23  Aligned_cols=111  Identities=17%  Similarity=0.154  Sum_probs=71.4

Q ss_pred             cccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCccccCCCcc
Q 041976          567 ICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKV  646 (901)
Q Consensus       567 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  646 (901)
                      +.+...+++|++++|+|+ .++..+..+. +|+.|++++|+|+..  +.|..+++|++|++++|+++...+..+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~-~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLD-QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTT-CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccc-cCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            445666777777777776 4454434443 777777777777644  246677777777777777776555556667777


Q ss_pred             cEEeCCCCcCccCcc-ccccCCCCCcEEEccCCcCc
Q 041976          647 EVLDIGNIKINDAFP-YWLGNLPELQVLVLRSNKFH  681 (901)
Q Consensus       647 ~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~  681 (901)
                      ++|++++|++..... ..+..+++|++|++++|++.
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccc
Confidence            777777777655322 34556666666666666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4.7e-13  Score=124.60  Aligned_cols=125  Identities=15%  Similarity=0.086  Sum_probs=60.0

Q ss_pred             CCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCC-CCCCCCCCEE
Q 041976          239 NLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPD-IFNLTQVSFF  317 (901)
Q Consensus       239 ~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L  317 (901)
                      ++..+++|+|++|+++. ++..+..+++|++|++++|.++..  +.+..+++|++|++++|+++...+. +..+++|++|
T Consensus        16 n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            33344444444444432 233333444444444444444422  1244455555555555555444333 2345555555


Q ss_pred             ECCCCCCCCCC-CccccCCcCCcEEECcCCcCcccC---ChhhcCCCCCcEEE
Q 041976          318 DLSNNQLAGPI-PSHGSRLQNLVLIRLNNNSFSGTI---PSWLFSLPLLEYVR  366 (901)
Q Consensus       318 ~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~  366 (901)
                      ++++|++.... ...+..+++|++|++++|.++...   +..+..+|+|+.||
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            55555554321 134556666666666666665322   12456677777765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.33  E-value=1.5e-13  Score=146.61  Aligned_cols=47  Identities=28%  Similarity=0.403  Sum_probs=28.0

Q ss_pred             CCChhhccCCCCCEEeCCCCcccccCChhhhh--cCCCCccEEEcCCCc
Q 041976          470 AFPRFLRTQDELSYLDLSENKIDGQIPSWISE--IGKDSLSYVNLSHNF  516 (901)
Q Consensus       470 ~lp~~l~~~~~L~~L~ls~n~l~~~~p~~~~~--~~~~~L~~L~ls~n~  516 (901)
                      .+...+.....+++|++++|.+.......+..  ...++|+.++++++.
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~   70 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF   70 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCc
Confidence            44456777788888888888876544333321  233555555555443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=9e-11  Score=108.06  Aligned_cols=108  Identities=17%  Similarity=0.083  Sum_probs=87.9

Q ss_pred             CCcceeecCCCCCccCCccccCCCCcCEEECCCCC-CccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEc
Q 041976          218 SPIEYLDVSETSFSELPDSIGNLKLLGRLMLGYSQ-FVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDL  296 (901)
Q Consensus       218 ~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~-~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  296 (901)
                      .....++++++++.++|..+..+++|++|++.+++ ++..-+.+|.++++|+.|++++|+++...+..|..+++|++|+|
T Consensus         8 ~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            34556788888888888888888999999997664 77655677888999999999999998877888999999999999


Q ss_pred             cCCcCcccCCCCCCCCCCCEEECCCCCCC
Q 041976          297 SSNSFFGEIPDIFNLTQVSFFDLSNNQLA  325 (901)
Q Consensus       297 s~n~l~~~~~~~~~l~~L~~L~l~~n~l~  325 (901)
                      ++|+++...+.......|+.|++++|.+.
T Consensus        88 s~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cCCCCcccChhhhccccccccccCCCccc
Confidence            99999866666555557888888888875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.10  E-value=4.1e-13  Score=129.78  Aligned_cols=115  Identities=21%  Similarity=0.205  Sum_probs=55.5

Q ss_pred             CccCCccccCCCCcCEEECCCCCCccCCCccccCCCCCCEEECCCCcCCCCCCccccCCCCCCEEEccCCcCcccCCCCC
Q 041976          230 FSELPDSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSGHIPSSLSNLVQLTYLDLSSNSFFGEIPDIF  309 (901)
Q Consensus       230 l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~  309 (901)
                      ++.+|..+..+++|++|++++|++.. ++ .+..+++|++|++++|.++ .+|..+..+++|++|++++|.++.. +.+.
T Consensus        37 i~~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l-~~~~  112 (198)
T d1m9la_          37 IEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-SGIE  112 (198)
T ss_dssp             CCCCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH-HHHH
T ss_pred             hhhhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc-cccc
Confidence            33444555666666666666666552 22 3555556666666666554 3333333334555555555555432 2233


Q ss_pred             CCCCCCEEECCCCCCCCCCC-ccccCCcCCcEEECcCCcC
Q 041976          310 NLTQVSFFDLSNNQLAGPIP-SHGSRLQNLVLIRLNNNSF  348 (901)
Q Consensus       310 ~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l  348 (901)
                      .+++|++|++++|+++.... ..+..+++|+.|++++|.+
T Consensus       113 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccccccccchhccccccccccCCCccceeecCCCcc
Confidence            44445555555544442111 2344444444444444444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.09  E-value=1.8e-12  Score=125.16  Aligned_cols=118  Identities=22%  Similarity=0.280  Sum_probs=88.7

Q ss_pred             ccccccccCCCCCEEECCCCcCcccCCcchhcCCCCccEEECCCCcccccCCcCccCCCccCEEEccCCcccccCCcccc
Q 041976          562 EIIHSICDIIALDVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNNRLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLV  641 (901)
Q Consensus       562 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~  641 (901)
                      ..+..+..+++|++|++++|.|+ .++ .+..+. +|++|++++|.++. +|..+..++.|++|++++|+++..  ..+.
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~-~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~  112 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGME-NLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIE  112 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHT-TCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHH
T ss_pred             hhhhHHhcccccceeECcccCCC-Ccc-cccCCc-cccChhhccccccc-cccccccccccccccccccccccc--cccc
Confidence            34566778888999999999887 454 466666 89999999998874 455555566788899999888754  3477


Q ss_pred             CCCcccEEeCCCCcCccCcc-ccccCCCCCcEEEccCCcCcccCC
Q 041976          642 NCTKVEVLDIGNIKINDAFP-YWLGNLPELQVLVLRSNKFHGSVR  685 (901)
Q Consensus       642 ~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~  685 (901)
                      .+++|++|++++|+++.... ..+..+++|++|++++|++....+
T Consensus       113 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             ccccccccccccchhccccccccccCCCccceeecCCCccccCcc
Confidence            78888888998888876533 457788888888888888765433

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.7e-10  Score=104.75  Aligned_cols=83  Identities=13%  Similarity=0.104  Sum_probs=37.4

Q ss_pred             CEEECCCCcCcccCCcchhcCCCCccEEECCCC-cccccCCcCccCCCccCEEEccCCcccccCCccccCCCcccEEeCC
Q 041976          574 DVLDLSNNRLNGTIPECIGNFSPSLSVLDLRNN-RLNGSIPGTFAESNWLRSLNLNNNELGGAIPQSLVNCTKVEVLDIG  652 (901)
Q Consensus       574 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  652 (901)
                      +.++.+++.+. .+|..+..+. +|++|++++| .++.+.+..|.++++|+.|+|++|+|+.+.+.+|..+++|++|+|+
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~-~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CeEEecCCCCc-cCcccccCcc-ccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            33444444443 3333333333 4444554433 2444444444444445555555555444444444444444444444


Q ss_pred             CCcCcc
Q 041976          653 NIKIND  658 (901)
Q Consensus       653 ~n~l~~  658 (901)
                      +|+++.
T Consensus        89 ~N~l~~   94 (156)
T d2ifga3          89 FNALES   94 (156)
T ss_dssp             SSCCSC
T ss_pred             CCCCcc
Confidence            444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=5.8e-07  Score=82.58  Aligned_cols=80  Identities=23%  Similarity=0.270  Sum_probs=47.2

Q ss_pred             ccceeEEEccccccccc--cchhhhccCCCCeEeCCCCcCCCCCCccccCCCCCCEEeCCCCccCCCCCc-------CCc
Q 041976          758 LTVFTTIDFSSNGFDGE--ISQVIGKLHSLRLLNLSHNHFTGQIPSSLGNLAKLESLDLSSNNVAGKIPK-------PLT  828 (901)
Q Consensus       758 l~~L~~L~Ls~N~l~~~--~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-------~l~  828 (901)
                      ++.|++|+|++|+|+..  ++..+..+++|+.|+|++|.|+...+-.+.....|+.|++++|.++.....       .+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            45666666777766643  234556667777777777777654443333444566677777766654432       144


Q ss_pred             CCCCCCeee
Q 041976          829 SLTSLSVLN  837 (901)
Q Consensus       829 ~l~~L~~L~  837 (901)
                      .+++|++||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            566666665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=7.4e-07  Score=81.81  Aligned_cols=75  Identities=23%  Similarity=0.190  Sum_probs=61.1

Q ss_pred             ccchhhhccCCCCeEeCCCCcCCCCC--CccccCCCCCCEEeCCCCccCCCCCcCCcCCCCCCeeeCCCCcCccCCC
Q 041976          774 EISQVIGKLHSLRLLNLSHNHFTGQI--PSSLGNLAKLESLDLSSNNVAGKIPKPLTSLTSLSVLNLSHNRLDGPIP  848 (901)
Q Consensus       774 ~~~~~l~~l~~L~~L~Ls~N~l~~~~--p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~iP  848 (901)
                      .++..+.++++|++|+|++|+|+...  +..+..+++|+.|||++|.|+...+-.+.....|+.|++++|++.+...
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcc
Confidence            45556678999999999999999764  4567889999999999999997655344455689999999999987654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.49  E-value=3.4e-05  Score=70.69  Aligned_cols=85  Identities=14%  Similarity=0.179  Sum_probs=55.3

Q ss_pred             cceeEEEccccccccc----cchhhhccCCCCeEeCCCCcCCCC----CCccccCCCCCCEEeCCCCccCCC-------C
Q 041976          759 TVFTTIDFSSNGFDGE----ISQVIGKLHSLRLLNLSHNHFTGQ----IPSSLGNLAKLESLDLSSNNVAGK-------I  823 (901)
Q Consensus       759 ~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~L~~L~~L~Ls~N~l~~~-------~  823 (901)
                      +.+++|+|++|.+...    +...+...+.|++|+|++|.++..    +-..+..-++|++|+|++|.+...       +
T Consensus        44 ~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l  123 (167)
T d1pgva_          44 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM  123 (167)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred             CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHH
Confidence            4567777777777532    334556667788888888877742    223455667788888888866543       2


Q ss_pred             CcCCcCCCCCCeeeCCCCcC
Q 041976          824 PKPLTSLTSLSVLNLSHNRL  843 (901)
Q Consensus       824 p~~l~~l~~L~~L~Ls~N~l  843 (901)
                      .+.+..-++|+.|+++++..
T Consensus       124 ~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         124 MMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhCCCccEeeCcCCCc
Confidence            33444567888888877653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.15  E-value=6.6e-05  Score=68.70  Aligned_cols=13  Identities=15%  Similarity=0.115  Sum_probs=7.6

Q ss_pred             CCCCcEEEcCCCc
Q 041976          693 FPKLRILDLSINN  705 (901)
Q Consensus       693 l~~L~~L~Ls~n~  705 (901)
                      .++|+.|+++.+.
T Consensus       130 n~sL~~l~l~~~~  142 (167)
T d1pgva_         130 NESLLRVGISFAS  142 (167)
T ss_dssp             CSSCCEEECCCCC
T ss_pred             CCCccEeeCcCCC
Confidence            3556666666553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.61  E-value=0.00032  Score=63.96  Aligned_cols=85  Identities=16%  Similarity=0.255  Sum_probs=43.0

Q ss_pred             cceeEEEccccccccc----cchhhhccCCCCeEeCCCCcCCCC----CCccccCCCCCCEEeC--CCCccCC----CCC
Q 041976          759 TVFTTIDFSSNGFDGE----ISQVIGKLHSLRLLNLSHNHFTGQ----IPSSLGNLAKLESLDL--SSNNVAG----KIP  824 (901)
Q Consensus       759 ~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~L~~L~~L~L--s~N~l~~----~~p  824 (901)
                      +.|++|++++|.++..    +...+...++++.+++++|.++..    +...+...++|+.++|  ++|.+..    .+.
T Consensus        46 ~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La  125 (166)
T d1io0a_          46 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA  125 (166)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred             CccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHH
Confidence            4455555555555432    223344556666666666665432    2234455566665444  3445532    223


Q ss_pred             cCCcCCCCCCeeeCCCCcC
Q 041976          825 KPLTSLTSLSVLNLSHNRL  843 (901)
Q Consensus       825 ~~l~~l~~L~~L~Ls~N~l  843 (901)
                      +.+...+.|+.|+++.++.
T Consensus       126 ~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         126 NMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHCSSCCEEECCCSSH
T ss_pred             HHHHhCCCcCEEeCcCCCC
Confidence            3444556677777665543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.97  E-value=0.00039  Score=63.32  Aligned_cols=13  Identities=8%  Similarity=0.025  Sum_probs=7.4

Q ss_pred             CCCCcEEEcCCCc
Q 041976          693 FPKLRILDLSINN  705 (901)
Q Consensus       693 l~~L~~L~Ls~n~  705 (901)
                      .++|+.|++..+.
T Consensus       131 n~~L~~L~l~~~~  143 (166)
T d1io0a_         131 NTTLLKFGYHFTQ  143 (166)
T ss_dssp             CSSCCEEECCCSS
T ss_pred             CCCcCEEeCcCCC
Confidence            4556666665554