Citrus Sinensis ID: 041980

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MSVLWEKSETWRWIVRKTRDSKPFFLAFATVCGVVPGVVGYCVMQATNSRNPQLEAELRRTARPDSLMMGQVNRERLAEYLGELQRKEDTNDRYVAALRGETLIRKPYERIQPIPKENTTVADRPQEK
Secondary Structure (PSIPRED)
cccEEccccHHHHHHHHHcccHHHHHHHHHHHcccccEEEEEEEEEcccccHHHHHHHHHcccccHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccHHHHHHHHHHccccHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHEccccccccccEEEccccccccccccccccc
Coil and Loop (DISEMBL)
msvlwekseTWRWIVRKTRDSKPFFLAFATVCGVVPGVVGYCVMqatnsrnpqLEAELRrtarpdslmmgQVNRERLAEYLGELQRKEDTNDRYVAALRGEtlirkpyeriqpipkenttvadrpqek
Flexible Loop (DISEMBL)
msvlweksetwrwIVRKTRDSKPFFLAFATVCGVVPGVVGYCVMQatnsrnpqleaelrrtarpdslmmgqVNRERLAEYLgelqrkedtndrYVAALrgetlirkpyeriqpipkenttvadrpqek
Low Complexity Region (SEG)
MSVLWEKSETWRWIVRKTRDSKPFFLAFATvcgvvpgvvgycvMQATNSRNPQLEAELRRTARPDSLMMGQVNRERLAEYLGELQRKEDTNDRYVAALRGETLIRKPYERIQPIPKENTTVADRPQEK
Disordered region (IsUnstruct)
***LWEKSETWRWIVRKTRDSKPFFLAFATVCGVVPGVVGYCVMQA**********************************************RYVAALRGETLIRK**********************
Disordered Region (DISOPRED)
*SVLWEKSETWRWIVRKTRDSKPFFLAFATVCGVVPGVVGYCVMQ******************************RLAEYLG*********DRYVAALRGETLIRKPY********************
Disordered Region (DISEMBL)
MSVLWEKSETWRWIVRKTRDSKPFFLAFATVCGVVPGVVGYCVMQATNSRNPQLEAELRRTARPDSLMMGQVNRERLAEYLGELQRKEDTNDRYVAALRGETLIRKPYERIQPIPKEN**********
Disordered Region (DISPRO)
*SVLWEKSETWRWIVRKTRDSKPFFLAFATVCGVVPGVVGYCVMQATNSRNPQLEAELRRTARPDSLMMGQVNRERLAEYLGELQRKEDTNDRYVAALRGETLIRKPYERIQPIPK************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSVLWEKSETWRWIVRKTRDSKPFFLAFATVCGVVPGVVGYCVMQATNSRNPQLEAELRRTARPDSLMMGQVNRERLAEYLGELQRKEDTNDRYVAALRGETLIRKPYERIQPIPKENTTVADRPQEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
225462315	127	PREDICTED: uncharacterized protein LOC10	0.953	0.960	0.860	1e-57
224101307	133	predicted protein [Populus trichocarpa]	0.960	0.924	0.845	7e-56
449444302	133	PREDICTED: uncharacterized protein LOC10	0.992	0.954	0.771	2e-53
449531137	133	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.992	0.954	0.771	3e-53
255539975	130	conserved hypothetical protein [Ricinus	0.914	0.9	0.777	2e-50
226508058	138	hypothetical protein [Zea mays] gi|19469	0.953	0.884	0.762	3e-50
297842721	126	hypothetical protein ARALYDRAFT_477104 [	0.984	1.0	0.706	1e-49
18412355	126	uncharacterized protein [Arabidopsis tha	0.984	1.0	0.706	2e-49
255645541	132	unknown [Glycine max]	0.921	0.893	0.779	5e-49
326492784	136	predicted protein [Hordeum vulgare subsp	0.914	0.860	0.743	6e-49

>gi|225462315|ref|XP_002266781.1| PREDICTED: uncharacterized protein LOC100246650 [Vitis vinifera] gi|297736099|emb|CBI24137.3| unnamed protein product [Vitis vinifera]

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 105/122 (86%), Positives = 115/122 (94%)

Query: 1   MSVLWEKSETWRWIVRKTRDSKPFFLAFATVCGVVPGVVGYCVMQATNSRNPQLEAELRR 60
           MSVLWEKSETWRWIVRK+RDSKPFFLAFAT+CGVVPGV+GYCVMQ TNSRNP+LEA+LR 
Sbjct: 1   MSVLWEKSETWRWIVRKSRDSKPFFLAFATICGVVPGVIGYCVMQFTNSRNPELEAQLRS 60

Query: 61  TARPDSLMMGQVNRERLAEYLGELQRKEDTNDRYVAALRGETLIRKPYERIQPIPKENTT 120
            ARPDSLMMG+VN+ERLAE+LGELQRKEDTNDRYVAALRGETL RKPYERIQPIPK++  
Sbjct: 61  NARPDSLMMGKVNQERLAEFLGELQRKEDTNDRYVAALRGETLTRKPYERIQPIPKQSNM 120

Query: 121 VA 122
            A
Sbjct: 121 EA 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101307|ref|XP_002312225.1| predicted protein [Populus trichocarpa] gi|118487120|gb|ABK95389.1| unknown [Populus trichocarpa] gi|222852045|gb|EEE89592.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (563), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 104/123 (84%), Positives = 111/123 (90%)

Query: 1   MSVLWEKSETWRWIVRKTRDSKPFFLAFATVCGVVPGVVGYCVMQATNSRNPQLEAELRR 60
           MS+LWEKSE WRWIVRKTRDSKPFF AFATVCGVVPGV+GY VMQ TNSRNP+LEA LR+
Sbjct: 1   MSILWEKSEAWRWIVRKTRDSKPFFFAFATVCGVVPGVIGYFVMQTTNSRNPELEARLRQ 60

Query: 61  TARPDSLMMGQVNRERLAEYLGELQRKEDTNDRYVAALRGETLIRKPYERIQPIPKENTT 120
            ARPDSLMMG+VNRERLAEYLGELQRKEDTNDRYVAALRGETL R P+ RIQPIPK + T
Sbjct: 61  NARPDSLMMGKVNRERLAEYLGELQRKEDTNDRYVAALRGETLTRNPHLRIQPIPKLDNT 120

Query: 121 VAD 123
            AD
Sbjct: 121 QAD 123

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444302|ref|XP_004139914.1| PREDICTED: uncharacterized protein LOC101217822 [Cucumis sativus]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 98/127 (77%), Positives = 110/127 (86%)

Query: 1   MSVLWEKSETWRWIVRKTRDSKPFFLAFATVCGVVPGVVGYCVMQATNSRNPQLEAELRR 60
           MS+LWEKSETWRW+VRKTRDSK FF  FATVCG+VPG++GYCVMQATNS N QLEA LR+
Sbjct: 1   MSILWEKSETWRWVVRKTRDSKSFFFTFATVCGLVPGLIGYCVMQATNSTNEQLEARLRQ 60

Query: 61  TARPDSLMMGQVNRERLAEYLGELQRKEDTNDRYVAALRGETLIRKPYERIQPIPKENTT 120
            ARP+SLMMGQVNRERLAEYLGELQRKEDTNDRYVAAL G+TL RKPY RIQPIP ++  
Sbjct: 61  NARPESLMMGQVNRERLAEYLGELQRKEDTNDRYVAALEGKTLTRKPYVRIQPIPNQSND 120

Query: 121 VADRPQE 127
              + Q+
Sbjct: 121 ATVKEQQ 127

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531137|ref|XP_004172544.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101228668 [Cucumis sativus]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 98/127 (77%), Positives = 109/127 (85%)

Query: 1   MSVLWEKSETWRWIVRKTRDSKPFFLAFATVCGVVPGVVGYCVMQATNSRNPQLEAELRR 60
           MS+LWEKSETWRW+VRKTRDSK FF  FATVCG+VPG++GYCVMQATNS N QLEA LR 
Sbjct: 1   MSILWEKSETWRWVVRKTRDSKSFFFTFATVCGLVPGLIGYCVMQATNSTNEQLEARLRX 60

Query: 61  TARPDSLMMGQVNRERLAEYLGELQRKEDTNDRYVAALRGETLIRKPYERIQPIPKENTT 120
            ARP+SLMMGQVNRERLAEYLGELQRKEDTNDRYVAAL G+TL RKPY RIQPIP ++  
Sbjct: 61  NARPESLMMGQVNRERLAEYLGELQRKEDTNDRYVAALEGKTLTRKPYVRIQPIPNQSND 120

Query: 121 VADRPQE 127
              + Q+
Sbjct: 121 ATVKEQQ 127

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539975|ref|XP_002511052.1| conserved hypothetical protein [Ricinus communis] gi|223550167|gb|EEF51654.1| conserved hypothetical protein [Ricinus communis]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 91/117 (77%), Positives = 105/117 (89%)

Query: 1   MSVLWEKSETWRWIVRKTRDSKPFFLAFATVCGVVPGVVGYCVMQATNSRNPQLEAELRR 60
           MSVLWEKSETWRWIVRKTRDSKPFF+ FAT+CGVVPGV+GYCVMQ TNS NP+LE  LR+
Sbjct: 1   MSVLWEKSETWRWIVRKTRDSKPFFITFATICGVVPGVIGYCVMQLTNSSNPELETRLRQ 60

Query: 61  TARPDSLMMGQVNRERLAEYLGELQRKEDTNDRYVAALRGETLIRKPYERIQPIPKE 117
            AR +SL+M +VN+ERLAEYLGEL+RKEDTNDRY+AAL+G+TL R PY RIQPIP +
Sbjct: 61  NARHESLVMAKVNQERLAEYLGELKRKEDTNDRYIAALKGQTLTRNPYVRIQPIPNQ 117

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226508058|ref|NP_001143598.1| hypothetical protein [Zea mays] gi|194696156|gb|ACF82162.1| unknown [Zea mays] gi|195623092|gb|ACG33376.1| hypothetical protein [Zea mays] gi|413936928|gb|AFW71479.1| hypothetical protein ZEAMMB73_611161 [Zea mays]

 Score =  202 bits (514), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 93/122 (76%), Positives = 103/122 (84%)

Query: 1   MSVLWEKSETWRWIVRKTRDSKPFFLAFATVCGVVPGVVGYCVMQATNSRNPQLEAELRR 60
           MS+LWEKS  WRW+VR+TRDSKPFF  FA +CGVVPGV+GY VMQ T SRN QLEA LR 
Sbjct: 1   MSILWEKSAGWRWLVRRTRDSKPFFFTFAALCGVVPGVIGYGVMQLTGSRNEQLEAHLRS 60

Query: 61  TARPDSLMMGQVNRERLAEYLGELQRKEDTNDRYVAALRGETLIRKPYERIQPIPKENTT 120
           TARP++ MMGQVNRERLAE+LGELQRKEDTNDRYVAALRGETL RK YERIQP+P  N  
Sbjct: 61  TARPETTMMGQVNRERLAEFLGELQRKEDTNDRYVAALRGETLTRKRYERIQPLPAANAQ 120

Query: 121 VA 122
            +
Sbjct: 121 AS 122

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842721|ref|XP_002889242.1| hypothetical protein ARALYDRAFT_477104 [Arabidopsis lyrata subsp. lyrata] gi|297335083|gb|EFH65501.1| hypothetical protein ARALYDRAFT_477104 [Arabidopsis lyrata subsp. lyrata]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 89/126 (70%), Positives = 109/126 (86%)

Query: 1   MSVLWEKSETWRWIVRKTRDSKPFFLAFATVCGVVPGVVGYCVMQATNSRNPQLEAELRR 60
           MS ++EKS TWRW+V KTRDS+ FF  FA +CGV+PGV+GY VMQ TNS NP+LEA LR+
Sbjct: 1   MSFMYEKSNTWRWLVMKTRDSRSFFFTFAALCGVIPGVIGYGVMQVTNSSNPELEARLRK 60

Query: 61  TARPDSLMMGQVNRERLAEYLGELQRKEDTNDRYVAALRGETLIRKPYERIQPIPKENTT 120
           +ARPD+LMMG+VN+ERLAEYLGEL++K+DTNDRYVAALRGETL RKPY+RIQP+PK + T
Sbjct: 61  SARPDTLMMGKVNQERLAEYLGELKQKQDTNDRYVAALRGETLTRKPYQRIQPVPKPDDT 120

Query: 121 VADRPQ 126
           V  + Q
Sbjct: 121 VTTKAQ 126

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412355|ref|NP_565207.1| uncharacterized protein [Arabidopsis thaliana] gi|4835770|gb|AAD30237.1|AC007202_19 EST gb|F19962 comes from this gene [Arabidopsis thaliana] gi|11692844|gb|AAG40025.1|AF324674_1 At1g79390 [Arabidopsis thaliana] gi|11908092|gb|AAG41475.1|AF326893_1 unknown protein [Arabidopsis thaliana] gi|12642900|gb|AAK00392.1|AF339710_1 unknown protein [Arabidopsis thaliana] gi|110743670|dbj|BAE99672.1| hypothetical protein [Arabidopsis thaliana] gi|332198116|gb|AEE36237.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/126 (70%), Positives = 109/126 (86%)

Query: 1   MSVLWEKSETWRWIVRKTRDSKPFFLAFATVCGVVPGVVGYCVMQATNSRNPQLEAELRR 60
           MS ++EKS TWRW+V KTRDS+ FF  FA +CGV+PGV+GY VMQ TNS NP+LEA LR+
Sbjct: 1   MSFMYEKSNTWRWLVMKTRDSRSFFFTFAALCGVIPGVIGYGVMQVTNSSNPELEARLRK 60

Query: 61  TARPDSLMMGQVNRERLAEYLGELQRKEDTNDRYVAALRGETLIRKPYERIQPIPKENTT 120
           +ARPD+LMMG+VN+ERLAEYLGEL++K+DTNDRYVAALRGETL RKPY+RIQP+PK + T
Sbjct: 61  SARPDTLMMGKVNQERLAEYLGELKQKQDTNDRYVAALRGETLTRKPYQRIQPMPKPDDT 120

Query: 121 VADRPQ 126
           V  + Q
Sbjct: 121 VTTKTQ 126

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645541|gb|ACU23265.1| unknown [Glycine max]

 Score =  198 bits (504), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 92/118 (77%), Positives = 106/118 (89%)

Query: 11  WRWIVRKTRDSKPFFLAFATVCGVVPGVVGYCVMQATNSRNPQLEAELRRTARPDSLMMG 70
           W+WIVR+TR+SKPFFLAFATVCGVVPGV+GY VMQ TN+RN +LE+ LR  ARP+SLMMG
Sbjct: 5   WKWIVRRTRESKPFFLAFATVCGVVPGVIGYGVMQLTNTRNEKLESHLRTNARPESLMMG 64

Query: 71  QVNRERLAEYLGELQRKEDTNDRYVAALRGETLIRKPYERIQPIPKENTTVADRPQEK 128
           QVN+ERLAEYLGELQRKEDTNDRYVAALRGETL RKPY RIQPIP++  T A++ Q+K
Sbjct: 65  QVNKERLAEYLGELQRKEDTNDRYVAALRGETLTRKPYVRIQPIPEQTDTKANKEQKK 122

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326492784|dbj|BAJ90248.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326507724|dbj|BAJ86605.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326507926|dbj|BAJ86706.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  198 bits (503), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 87/117 (74%), Positives = 103/117 (88%)

Query: 1   MSVLWEKSETWRWIVRKTRDSKPFFLAFATVCGVVPGVVGYCVMQATNSRNPQLEAELRR 60
           MS+LWEKS  WRW+V +TRDSKPFF  FA +CGV+PGVVGY VMQ T+SRN +LEA LR 
Sbjct: 1   MSILWEKSRAWRWLVGRTRDSKPFFFTFAALCGVIPGVVGYGVMQLTSSRNDKLEAHLRS 60

Query: 61  TARPDSLMMGQVNRERLAEYLGELQRKEDTNDRYVAALRGETLIRKPYERIQPIPKE 117
            ARP++ MMGQ+NRERLAE+LGE+QRKEDTNDRYVAAL+GETL RKPYERIQP+P++
Sbjct: 61  NARPETTMMGQINRERLAEFLGEIQRKEDTNDRYVAALKGETLTRKPYERIQPVPQQ 117

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
TAIR|locus:2206370	126	AT1G79390 "AT1G79390" [Arabido	0.984	1.0	0.634	1.8e-39

TAIR|locus:2206370 AT1G79390 "AT1G79390" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 80/126 (63%), Positives = 97/126 (76%)

Query:     1 MSVLWEKSETWRWIVRKTRDSKPFFLAFATXXXXXXXXXXXXXMQATNSRNPQLEAELRR 60
             MS ++EKS TWRW+V KTRDS+ FF  FA              MQ TNS NP+LEA LR+
Sbjct:     1 MSFMYEKSNTWRWLVMKTRDSRSFFFTFAALCGVIPGVIGYGVMQVTNSSNPELEARLRK 60

Query:    61 TARPDSLMMGQVNRERLAEYLGELQRKEDTNDRYVAALRGETLIRKPYERIQPIPKENTT 120
             +ARPD+LMMG+VN+ERLAEYLGEL++K+DTNDRYVAALRGETL RKPY+RIQP+PK + T
Sbjct:    61 SARPDTLMMGKVNQERLAEYLGELKQKQDTNDRYVAALRGETLTRKPYQRIQPMPKPDDT 120

Query:   121 VADRPQ 126
             V  + Q
Sbjct:   121 VTTKTQ 126


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.379    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      128       115   0.00091  102 3  11 22  0.49    30
                                                     29  0.45    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  542 (58 KB)
  Total size of DFA:  122 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.91u 0.10s 13.01t   Elapsed:  00:00:01
  Total cpu time:  12.91u 0.10s 13.01t   Elapsed:  00:00:01
  Start:  Sat May 11 14:52:41 2013   End:  Sat May 11 14:52:42 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
PRK11677	134	hypothetical protein; Provisional	82.74
PF06295	128	DUF1043: Protein of unknown function (DUF1043); In	82.52

>PRK11677 hypothetical protein; Provisional

Probab=82.74  E-value=0.74  Score=35.18  Aligned_cols=34  Identities=26%  Similarity=0.333  Sum_probs=26.5

Q ss_pred             HHHHHhhccccceeeeeeeccCCCC---hHHHHHHhh
Q 041980           27 AFATVCGVVPGVVGYCVMQATNSRN---PQLEAELRR   60 (128)
Q Consensus        27 ~Fa~~C~vVP~v~Gy~VMq~Tn~~~---~~le~~Lr~   60 (128)
                      .+++++++|-++||+.+|+.+++..   .+|+++|-+
T Consensus         4 ~~a~i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~   40 (134)
T PRK11677          4 EYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEK   40 (134)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Confidence            4567899999999999999999873   347776643

>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=82.52  E-value=0.24  Score=36.54  Aligned_cols=32  Identities=31%  Similarity=0.464  Sum_probs=26.1

Q ss_pred             HHHHhhccccceeeeeeeccCCCC---hHHHHHHh
Q 041980           28 FATVCGVVPGVVGYCVMQATNSRN---PQLEAELR   59 (128)
Q Consensus        28 Fa~~C~vVP~v~Gy~VMq~Tn~~~---~~le~~Lr   59 (128)
                      ++++||+|-++||+.+++.++++.   .+|+.+|-
T Consensus         1 y~~i~lvvG~iiG~~~~r~~~~~~~~q~~l~~eL~   35 (128)
T PF06295_consen    1 YAIIGLVVGLIIGFLIGRLTSSNQQKQAKLEQELE   35 (128)
T ss_pred             ChHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence            467889999999999999999884   45777765

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00