Citrus Sinensis ID: 041985

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----
GVNKSARSSYSNLPALDVSLAFPQATPATSKFPPCASDYYINFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKGYGCPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAKINSLLTGREITGFASFKPAVLTQQSRL
ccccccccccccccccccccccccccccccccccccccHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHccccccccccccEEEccccccccccccccEEEEEEccEEEEEccEEEEcccccccEEEEEEEEcccccEEEEEEcccccccccccccccEEEEEEEcccEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccccccccccc
ccccccccccccccHcHHHHccccccccccccccccEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHccccHHHHHHHHHHcccccccHccHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHcHHHHHHHccHHHHHHHHHHHHHccccEEEEccEccEcccccccccEEEEccccEEEEEEEEEEEccccEEEEEEEEEccHHHHEEEEEEEcccccEEEccccHcccccccccEEEEEcccEccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEccEEHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccHHHHHHHHHcHcccEEEEEEccccHHEEEEc
gvnksarssysnlpaldvslafpqatpatskfppcasdyyinfdgLLTSEEQAIRKKVRECAEKELAPIVAEYwekaefpfqvipklgalniaagtikgygcpglcITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYgseeqkqkylpSMAQLKTIASwaltepdygsdasalRTTATkveggwilegqkrwvgnsTFADLLVILARNTTTKQINAFIVkkhapgltatkieNKIGLrivqngdvllknvfvpdedrvpgfksfqDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMerkqfgapsatfQITQQKLAQMLGNIQAMILAGWRVCNlyedgkmtagHASLAKGWITSRARETVALGREllggngistDFHVAKINSLLTgreitgfasfkpavltqqsrl
gvnksarssysnlpaLDVSLAFPQATPATSKFPPCASDYYINFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKGYGCPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEggwilegqkrwvgnSTFADLLVILARNTTTKQINAfivkkhapgltaTKIENKIGLRIVQNGDVLLKNVfvpdedrvpgFKSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWITSRARETVALGRELlggngistdFHVAKINSLLTGreitgfasfkpavltqqsrl
GVNKSARSSYSNLPALDVSLAFPQATPATSKFPPCASDYYINFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKGYGCPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAKINSLLTGREITGFASFKPAVLTQQSRL
*******************LAF*******SKFPPCASDYYINFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKGYGCPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSE****KYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAKINSLLTGREITGFASFKPAV*******
**********************************CASDYYINFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKGYGCPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAKINSLLTGREITGFASFK**********
**********SNLPALDVSLAFPQATPATSKFPPCASDYYINFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKGYGCPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAKINSLLTGREITGFASFKPAVLTQQSRL
**********SNLPALDVSLAFPQATPATSKFPPCASDYYINFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKGYGCPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAKINSLLTGREITGFASFKPAVLTQQSRL
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GVNKSARSSYSNLPALDVSLAFPQATPATSKFPPCASDYYINFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKGYGCPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGFKSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAKINSLLTGREITGFASFKPAVLTQQSRL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query415 2.2.26 [Sep-21-2011]
Q96329436 Acyl-coenzyme A oxidase 4 yes no 0.980 0.933 0.710 1e-180
Q20772409 Probable glutaryl-CoA deh yes no 0.862 0.875 0.328 7e-58
Q8HXX8438 Glutaryl-CoA dehydrogenas N/A no 0.860 0.815 0.337 2e-52
Q60759438 Glutaryl-CoA dehydrogenas yes no 0.913 0.865 0.33 3e-52
Q2KHZ9438 Glutaryl-CoA dehydrogenas yes no 0.860 0.815 0.337 3e-52
Q92947438 Glutaryl-CoA dehydrogenas yes no 0.860 0.815 0.340 3e-52
P81140408 Glutaryl-CoA dehydrogenas no no 0.860 0.875 0.342 2e-51
Q54R47420 Glutaryl-CoA dehydrogenas no no 0.869 0.859 0.320 3e-50
P45857379 Acyl-CoA dehydrogenase OS yes no 0.824 0.902 0.332 1e-44
P52042379 Acyl-CoA dehydrogenase, s yes no 0.826 0.905 0.316 2e-41
>sp|Q96329|ACOX4_ARATH Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidopsis thaliana GN=ACX4 PE=1 SV=1 Back     alignment and function desciption
 Score =  631 bits (1628), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 304/428 (71%), Positives = 346/428 (80%), Gaps = 21/428 (4%)

Query: 4   KSARSSYSNLPALDVSLAFPQATPATSKFPPCASDYYINFDGLLTSEEQAIRKKVRECAE 63
           K  +SSY +LP +++S+AFPQATPA S FPPC SDYY +F+ LLT EEQAIRKKVREC E
Sbjct: 14  KKVKSSYFDLPPMEMSVAFPQATPA-STFPPCTSDYY-HFNDLLTPEEQAIRKKVRECME 71

Query: 64  KELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKGYGCPGLCITGAAVALAEIARVDVS 123
           KE+API+ EYWEKAEFPF + PKLGA+ +A G+IKGYGCPGL IT  A+A AEIARVD S
Sbjct: 72  KEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAIATAEIARVDAS 131

Query: 124 CSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTAT 183
           CS+FILVHSSL MLTIA  GSE QK+KYLPS+AQL T+A WALTEPD GSDAS L TTAT
Sbjct: 132 CSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTAT 191

Query: 184 KVEGGWILEGQKRWVGNSTFADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLR 243
           KVEGGW + GQKRW+GNSTFADLL+I ARNTTT QIN FIVKK APGL ATKI NKIGLR
Sbjct: 192 KVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLKATKIPNKIGLR 251

Query: 244 IVQNGDVLLKNVFVPDEDRVPGFKSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLM 303
           +VQNGD+LL+NVFVPDEDR+PG  SFQDT   L++SR+MVAWQ IGI+MG+YDMCHRYL 
Sbjct: 252 MVQNGDILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLK 311

Query: 304 ERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWITSR 363
           ERKQFGAP A FQ+ QQKL QMLGN+QAM L GWR+C LYE G+MT G ASL K WI+S+
Sbjct: 312 ERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSK 371

Query: 364 ARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITGFASFKPA 407
           ARET +LGRELLGGNGI  DF VAK                IN+L+TGRE+TG ASFKPA
Sbjct: 372 ARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTGIASFKPA 431

Query: 408 VLTQQSRL 415
               +SRL
Sbjct: 432 T---RSRL 436
Catalyzes the desaturation of short-chain acyl-CoAs to 2-trans-enoyl-CoAs. Active on butyryl-CoA (C4), hexanoyl-CoA (C6), and octanoyl-CoA (C8). Has no activity as acyl-CoA dehydrogenase or on crotonyl-CoA (an unsaturated C4:1 carbocyclic ester) or glutaryl-CoA (a dicarboxylic ester).
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 3EC: .EC: 6
>sp|Q20772|GCDH_CAEEL Probable glutaryl-CoA dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=F54D5.7 PE=1 SV=1 Back     alignment and function description
>sp|Q8HXX8|GCDH_MACFA Glutaryl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=GCDH PE=2 SV=1 Back     alignment and function description
>sp|Q60759|GCDH_MOUSE Glutaryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Gcdh PE=2 SV=2 Back     alignment and function description
>sp|Q2KHZ9|GCDH_BOVIN Glutaryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=GCDH PE=2 SV=1 Back     alignment and function description
>sp|Q92947|GCDH_HUMAN Glutaryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=GCDH PE=1 SV=1 Back     alignment and function description
>sp|P81140|GCDH_PIG Glutaryl-CoA dehydrogenase, mitochondrial (Fragment) OS=Sus scrofa GN=GCDH PE=1 SV=1 Back     alignment and function description
>sp|Q54R47|GCDH_DICDI Glutaryl-CoA dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=gcdh PE=3 SV=1 Back     alignment and function description
>sp|P45857|ACDB_BACSU Acyl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=mmgC PE=2 SV=3 Back     alignment and function description
>sp|P52042|ACDS_CLOAB Acyl-CoA dehydrogenase, short-chain specific OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=bcd PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query415
402715756437 acyl-CoA oxidase 4 [Prunus persica] 0.992 0.942 0.751 0.0
224139128437 predicted protein [Populus trichocarpa] 0.992 0.942 0.739 0.0
255582668440 acyl-CoA dehydrogenase, putative [Ricinu 0.992 0.936 0.732 0.0
359481157439 PREDICTED: acyl-coenzyme A oxidase 4, pe 0.987 0.933 0.738 0.0
359481155446 PREDICTED: acyl-coenzyme A oxidase 4, pe 0.987 0.919 0.738 0.0
356521028421 PREDICTED: acyl-coenzyme A oxidase 4, pe 0.971 0.957 0.739 0.0
224087764436 predicted protein [Populus trichocarpa] 0.990 0.942 0.716 0.0
47118098440 putative short-chain acyl-CoA oxidase [T 0.980 0.925 0.72 1e-179
297819888436 acyl-CoA oxidase 4 [Arabidopsis lyrata s 0.980 0.933 0.714 1e-179
449439864440 PREDICTED: acyl-coenzyme A oxidase 4, pe 0.990 0.934 0.703 1e-178
>gi|402715756|gb|AFQ93696.1| acyl-CoA oxidase 4 [Prunus persica] Back     alignment and taxonomy information
 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/430 (75%), Positives = 358/430 (83%), Gaps = 18/430 (4%)

Query: 2   VNKSARSSYSNLPALDVSLAFPQATPATSKFPPCASDYYINFDGLLTSEEQAIRKKVREC 61
           VNK+ R++Y N PA+DVSLAFPQATPA S FPPC SDYY  FD LLT EEQA+R +VR+C
Sbjct: 10  VNKNERTNYFNSPAMDVSLAFPQATPA-STFPPCTSDYY-QFDDLLTPEEQAVRLRVRQC 67

Query: 62  AEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKGYGCPGLCITGAAVALAEIARVD 121
            EK++API+AEYWEKAEFPF VIPK GAL IA GTIKGYGCPGL IT  A A AEIARVD
Sbjct: 68  LEKDVAPIMAEYWEKAEFPFHVIPKFGALRIAGGTIKGYGCPGLSITANAFATAEIARVD 127

Query: 122 VSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTT 181
            SCS+F LVHSSLAMLTIA  GSE QKQ+YLPS+A+LKT+A WALTEPDYGSDASALRTT
Sbjct: 128 ASCSTFFLVHSSLAMLTIALCGSEAQKQEYLPSLAELKTVACWALTEPDYGSDASALRTT 187

Query: 182 ATKVEGGWILEGQKRWVGNSTFADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIG 241
           ATKVEGGWILEGQKRW+GNSTFAD+LVI ARNTTT QIN +IVKK+ PGLTATKIENKIG
Sbjct: 188 ATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYIVKKNVPGLTATKIENKIG 247

Query: 242 LRIVQNGDVLLKNVFVPDEDRVPGFKSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRY 301
           LRIVQNGD+LLK VFVPDEDR+PG  SFQDT   L++SR+MVAWQ IG++MGVYDMCHRY
Sbjct: 248 LRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGLSMGVYDMCHRY 307

Query: 302 LMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWIT 361
           L ERKQFGAP A FQI Q+KL +MLGN+QAM+L GWR+C LYE GKMT GHASL K WIT
Sbjct: 308 LKERKQFGAPLAAFQINQEKLVRMLGNVQAMVLIGWRLCKLYEKGKMTPGHASLGKAWIT 367

Query: 362 SRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITGFASFK 405
            RARETVALGRELLGGNGI  DF VAK                IN+L+TGREITG ASFK
Sbjct: 368 LRARETVALGRELLGGNGILADFLVAKAFGDLEPIYTFEGTYDINALVTGREITGIASFK 427

Query: 406 PAVLTQQSRL 415
           PA  +Q+SRL
Sbjct: 428 PAASSQRSRL 437

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224139128|ref|XP_002322987.1| predicted protein [Populus trichocarpa] gi|222867617|gb|EEF04748.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255582668|ref|XP_002532113.1| acyl-CoA dehydrogenase, putative [Ricinus communis] gi|223528216|gb|EEF30275.1| acyl-CoA dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359481157|ref|XP_003632582.1| PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359481155|ref|XP_002264086.2| PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like isoform 1 [Vitis vinifera] gi|296083170|emb|CBI22806.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356521028|ref|XP_003529160.1| PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like [Glycine max] Back     alignment and taxonomy information
>gi|224087764|ref|XP_002308225.1| predicted protein [Populus trichocarpa] gi|222854201|gb|EEE91748.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|47118098|gb|AAT11172.1| putative short-chain acyl-CoA oxidase [Tropaeolum majus] Back     alignment and taxonomy information
>gi|297819888|ref|XP_002877827.1| acyl-CoA oxidase 4 [Arabidopsis lyrata subsp. lyrata] gi|297323665|gb|EFH54086.1| acyl-CoA oxidase 4 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449439864|ref|XP_004137705.1| PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like [Cucumis sativus] gi|449483509|ref|XP_004156611.1| PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query415
TAIR|locus:2074403436 ACX4 "acyl-CoA oxidase 4" [Ara 0.980 0.933 0.710 1.2e-159
DICTYBASE|DDB_G0274585430 DDB_G0274585 "putative acyl-Co 0.896 0.865 0.397 2.9e-71
WB|WBGene00010052409 F54D5.7 [Caenorhabditis elegan 0.824 0.836 0.339 3e-53
UNIPROTKB|Q4KKG4393 gcdH "Glutaryl-CoA dehydrogena 0.828 0.875 0.341 7.2e-52
FB|FBgn0031824419 CG9547 [Drosophila melanogaste 0.836 0.828 0.357 8.3e-51
UNIPROTKB|Q47V61394 gcdH "Glutaryl-CoA dehydrogena 0.824 0.868 0.349 8.3e-51
TIGR_CMR|CPS_4667394 CPS_4667 "glutaryl-CoA dehydro 0.824 0.868 0.349 8.3e-51
ZFIN|ZDB-GENE-040426-1855441 gcdh "glutaryl-Coenzyme A dehy 0.865 0.814 0.326 4.1e-49
ZFIN|ZDB-GENE-041010-117427 gcdhl "glutaryl-Coenzyme A deh 0.836 0.812 0.334 4.1e-49
UNIPROTKB|F6UXJ6438 GCDH "Uncharacterized protein" 0.860 0.815 0.340 3.7e-48
TAIR|locus:2074403 ACX4 "acyl-CoA oxidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1555 (552.4 bits), Expect = 1.2e-159, P = 1.2e-159
 Identities = 304/428 (71%), Positives = 346/428 (80%)

Query:     4 KSARSSYSNLPALDVSLAFPQATPATSKFPPCASDYYINFDGLLTSEEQAIRKKVRECAE 63
             K  +SSY +LP +++S+AFPQATPA S FPPC SDYY +F+ LLT EEQAIRKKVREC E
Sbjct:    14 KKVKSSYFDLPPMEMSVAFPQATPA-STFPPCTSDYY-HFNDLLTPEEQAIRKKVRECME 71

Query:    64 KELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKGYGCPGLCITGAAVALAEIARVDVS 123
             KE+API+ EYWEKAEFPF + PKLGA+ +A G+IKGYGCPGL IT  A+A AEIARVD S
Sbjct:    72 KEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAIATAEIARVDAS 131

Query:   124 CSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTAT 183
             CS+FILVHSSL MLTIA  GSE QK+KYLPS+AQL T+A WALTEPD GSDAS L TTAT
Sbjct:   132 CSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTAT 191

Query:   184 KVEGGWILEGQKRWVGNSTFADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLR 243
             KVEGGW + GQKRW+GNSTFADLL+I ARNTTT QIN FIVKK APGL ATKI NKIGLR
Sbjct:   192 KVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLKATKIPNKIGLR 251

Query:   244 IVQNGDVLLKNVFVPDEDRVPGFKSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLM 303
             +VQNGD+LL+NVFVPDEDR+PG  SFQDT   L++SR+MVAWQ IGI+MG+YDMCHRYL 
Sbjct:   252 MVQNGDILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLK 311

Query:   304 ERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWITSR 363
             ERKQFGAP A FQ+ QQKL QMLGN+QAM L GWR+C LYE G+MT G ASL K WI+S+
Sbjct:   312 ERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSK 371

Query:   364 ARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITGFASFKPA 407
             ARET +LGRELLGGNGI  DF VAK                IN+L+TGRE+TG ASFKPA
Sbjct:   372 ARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTGIASFKPA 431

Query:   408 VLTQQSRL 415
                 +SRL
Sbjct:   432 T---RSRL 436
GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM
GO:0008152 "metabolic process" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=ISS
GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0003997 "acyl-CoA oxidase activity" evidence=IMP;IDA
GO:0005777 "peroxisome" evidence=IDA
GO:0006635 "fatty acid beta-oxidation" evidence=RCA;IMP;IDA
GO:0009793 "embryo development ending in seed dormancy" evidence=IGI
GO:0046459 "short-chain fatty acid metabolic process" evidence=TAS
GO:0005829 "cytosol" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0007033 "vacuole organization" evidence=RCA
GO:0016192 "vesicle-mediated transport" evidence=RCA
GO:0016558 "protein import into peroxisome matrix" evidence=RCA
GO:0044265 "cellular macromolecule catabolic process" evidence=RCA
DICTYBASE|DDB_G0274585 DDB_G0274585 "putative acyl-CoA oxidase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
WB|WBGene00010052 F54D5.7 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KKG4 gcdH "Glutaryl-CoA dehydrogenase" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
FB|FBgn0031824 CG9547 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q47V61 gcdH "Glutaryl-CoA dehydrogenase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4667 CPS_4667 "glutaryl-CoA dehydrogenase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1855 gcdh "glutaryl-Coenzyme A dehydrogenase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041010-117 gcdhl "glutaryl-Coenzyme A dehydrogenase, like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F6UXJ6 GCDH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P46703ACDP_MYCLE1, ., 3, ., 9, 9, ., -0.32780.83370.8894yesno
P63427ACDP_MYCTU1, ., 3, ., 9, 9, ., -0.33600.83370.8894yesno
P52042ACDS_CLOAB1, ., 3, ., 8, ., 10.31600.82650.9050yesno
Q92947GCDH_HUMAN1, ., 3, ., 9, 9, ., 70.34040.86020.8150yesno
Q2KHZ9GCDH_BOVIN1, ., 3, ., 9, 9, ., 70.33770.86020.8150yesno
Q20772GCDH_CAEEL1, ., 3, ., 9, 9, ., 70.32890.86260.8753yesno
Q96329ACOX4_ARATH1, ., 3, ., 3, ., 60.71020.98070.9334yesno
P45857ACDB_BACSU1, ., 3, ., 9, 9, ., -0.33230.82400.9023yesno
Q60759GCDH_MOUSE1, ., 3, ., 9, 9, ., 70.330.91320.8652yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.3.3.60.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
PLN02526412 PLN02526, PLN02526, acyl-coenzyme A oxidase 0.0
cd01151386 cd01151, GCD, Glutaryl-CoA dehydrogenase 0.0
COG1960393 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta 7e-83
cd01158373 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog 3e-82
cd00567327 cd00567, ACAD, Acyl-CoA dehydrogenase 2e-69
cd01162375 cd01162, IBD, Isobutyryl-CoA dehydrogenase 5e-55
cd01156376 cd01156, IVD, Isovaleryl-CoA dehydrogenase 2e-51
cd01160372 cd01160, LCAD, Long chain acyl-CoA dehydrogenase 5e-46
cd01157378 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase 2e-42
PLN02519404 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase 4e-39
cd01161409 cd01161, VLCAD, Very long chain acyl-CoA dehydroge 6e-37
pfam02771113 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, 1e-34
PRK12341381 PRK12341, PRK12341, putative acyl-CoA dehydrogenas 7e-33
PTZ00461410 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; 2e-29
PRK03354380 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogen 6e-29
cd01153407 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogena 1e-28
cd01152380 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehyd 4e-27
TIGR03207372 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-Co 9e-26
pfam00441150 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, 6e-22
PLN02636 686 PLN02636, PLN02636, acyl-coenzyme A oxidase 1e-18
pfam0277052 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, 6e-16
cd01150 610 cd01150, AXO, Peroxisomal acyl-CoA oxidase 7e-16
cd01154418 cd01154, AidB, Proteins involved in DNA damage res 3e-15
TIGR04022391 TIGR04022, sulfur_SfnB, sulfur acquisition oxidore 1e-12
TIGR03203378 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, 2e-12
TIGR03204395 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, 7e-12
PRK13026 774 PRK13026, PRK13026, acyl-CoA dehydrogenase; Review 1e-11
cd01155394 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases simil 8e-10
cd01163377 cd01163, DszC, Dibenzothiophene (DBT) desulfurizat 5e-09
PTZ00460 646 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provis 5e-09
PTZ00456 622 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provis 2e-08
PTZ00457 520 PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provis 8e-08
PRK09463 777 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed 2e-07
PLN02443 664 PLN02443, PLN02443, acyl-coenzyme A oxidase 2e-06
cd01159370 cd01159, NcnH, Naphthocyclinone hydroxylase 8e-05
PLN02312 680 PLN02312, PLN02312, acyl-CoA oxidase 2e-04
pfam08028134 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, 7e-04
>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase Back     alignment and domain information 
 Score =  727 bits (1878), Expect = 0.0
 Identities = 312/415 (75%), Positives = 344/415 (82%), Gaps = 19/415 (4%)

Query: 17  DVSLAFPQATPATSKFPPCASDYYINFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEK 76
           DVS+AFPQATPA S FPP  SDYY  FD LLT EEQA+RK+VREC EKE+API+ EYWEK
Sbjct: 1   DVSVAFPQATPA-SIFPPSVSDYY-QFDDLLTPEEQALRKRVRECMEKEVAPIMTEYWEK 58

Query: 77  AEFPFQVIPKLGALNIAAGTIKGYGCPGLCITGAAVALAEIARVDVSCSSFILVHSSLAM 136
           AEFPF +IPKLG+L IA GTIKGYGCPGL IT +A+A AE+ARVD SCS+FILVHSSLAM
Sbjct: 59  AEFPFHIIPKLGSLGIAGGTIKGYGCPGLSITASAIATAEVARVDASCSTFILVHSSLAM 118

Query: 137 LTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKR 196
           LTIA  GSE QKQKYLPS+AQL T+A WALTEPDYGSDAS+L TTATKVEGGWIL GQKR
Sbjct: 119 LTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKR 178

Query: 197 WVGNSTFADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVF 256
           W+GNSTFAD+LVI ARNTTT QIN FIVKK APGL ATKIENKIGLR+VQNGD++LK+VF
Sbjct: 179 WIGNSTFADVLVIFARNTTTNQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVF 238

Query: 257 VPDEDRVPGFKSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQ 316
           VPDEDR+PG  SFQDT   L++SR+MVAWQ IGI+MGVYDMCHRYL ERKQFGAP A FQ
Sbjct: 239 VPDEDRLPGVNSFQDTNKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQ 298

Query: 317 ITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWITSRARETVALGRELLG 376
           I Q+KL +MLGNIQAM L GWR+C LYE GKMT GHASL K WIT +ARETVALGRELLG
Sbjct: 299 INQEKLVRMLGNIQAMFLVGWRLCKLYESGKMTPGHASLGKAWITKKARETVALGRELLG 358

Query: 377 GNGISTDFHVAK----------------INSLLTGREITGFASFKPAVLTQQSRL 415
           GNGI  DF VAK                IN+L+TGREITG ASFKPA  T +SRL
Sbjct: 359 GNGILADFLVAKAFCDLEPIYTYEGTYDINALVTGREITGIASFKPAAST-RSRL 412

Length = 412
>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal domain Back     alignment and domain information
>gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|179566 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5 Back     alignment and domain information
>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information
>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|201229 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain Back     alignment and domain information
>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain Back     alignment and domain information
>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>gnl|CDD|173843 cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product Back     alignment and domain information
>gnl|CDD|188537 TIGR04022, sulfur_SfnB, sulfur acquisition oxidoreductase, SfnB family Back     alignment and domain information
>gnl|CDD|132247 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit Back     alignment and domain information
>gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit Back     alignment and domain information
>gnl|CDD|237277 PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2 Back     alignment and domain information
>gnl|CDD|173852 cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C Back     alignment and domain information
>gnl|CDD|185639 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|185636 PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|236528 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|178062 PLN02443, PLN02443, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|173848 cd01159, NcnH, Naphthocyclinone hydroxylase Back     alignment and domain information
>gnl|CDD|215178 PLN02312, PLN02312, acyl-CoA oxidase Back     alignment and domain information
>gnl|CDD|219705 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 415
KOG0139398 consensus Short-chain acyl-CoA dehydrogenase [Lipi 100.0
KOG0140408 consensus Medium-chain acyl-CoA dehydrogenase [Lip 100.0
KOG0141421 consensus Isovaleryl-CoA dehydrogenase [Amino acid 100.0
PLN02526412 acyl-coenzyme A oxidase 100.0
KOG0138432 consensus Glutaryl-CoA dehydrogenase [Amino acid t 100.0
cd01151386 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd 100.0
cd01157378 MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar 100.0
PLN02519404 isovaleryl-CoA dehydrogenase 100.0
PRK12341381 putative acyl-CoA dehydrogenase; Provisional 100.0
TIGR03203378 pimD_small pimeloyl-CoA dehydrogenase, small subun 100.0
PRK03354380 crotonobetainyl-CoA dehydrogenase; Validated 100.0
cd01162375 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d 100.0
cd01156376 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d 100.0
TIGR03207372 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen 100.0
PTZ00461410 isovaleryl-CoA dehydrogenase; Provisional 100.0
cd01160372 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an 100.0
cd01161409 VLCAD Very long chain acyl-CoA dehydrogenase. VLCA 100.0
PRK09463 777 fadE acyl-CoA dehydrogenase; Reviewed 100.0
cd01158373 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and 100.0
PRK13026 774 acyl-CoA dehydrogenase; Reviewed 100.0
cd01155394 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE 100.0
TIGR03204395 pimC_large pimeloyl-CoA dehydrogenase, large subun 100.0
COG1960393 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] 100.0
PLN02636 686 acyl-coenzyme A oxidase 100.0
PLN02876822 acyl-CoA dehydrogenase 100.0
KOG0137 634 consensus Very-long-chain acyl-CoA dehydrogenase [ 100.0
cd01152380 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases 100.0
cd01153407 ACAD_fadE5 Putative acyl-CoA dehydrogenases simila 100.0
PTZ00456 622 acyl-CoA dehydrogenase; Provisional 100.0
cd01163377 DszC Dibenzothiophene (DBT) desulfurization enzyme 100.0
PLN02312 680 acyl-CoA oxidase 100.0
cd01154418 AidB Proteins involved in DNA damage response, sim 100.0
cd01159370 NcnH Naphthocyclinone hydroxylase. Naphthocyclinon 100.0
PRK11561538 isovaleryl CoA dehydrogenase; Provisional 100.0
cd00567327 ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac 100.0
PTZ00460 646 acyl-CoA dehydrogenase; Provisional 100.0
cd01150 610 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl 100.0
PTZ00457 520 acyl-CoA dehydrogenase; Provisional 100.0
KOG1469392 consensus Predicted acyl-CoA dehydrogenase [Genera 100.0
PLN02443 664 acyl-coenzyme A oxidase 100.0
KOG0135 661 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid t 100.0
TIGR02309477 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy 99.95
KOG0136 670 consensus Acyl-CoA oxidase [Lipid transport and me 99.92
PF00441150 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal 99.83
PF02771113 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal 99.76
COG2368493 Aromatic ring hydroxylase [Secondary metabolites b 99.59
PF0277052 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle doma 99.58
TIGR02310519 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxy 99.57
PF08028134 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal 99.5
PF11794264 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N ter 98.88
PF03241205 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C termi 96.86
PTZ00457520 acyl-CoA dehydrogenase; Provisional 93.01
KOG0137634 consensus Very-long-chain acyl-CoA dehydrogenase [ 90.63
PF14749125 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; 88.61
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-75  Score=528.69  Aligned_cols=349  Identities=33%  Similarity=0.504  Sum_probs=337.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccCC
Q 041985           44 DGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVDV  122 (415)
Q Consensus        44 ~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~~  122 (415)
                      ...|+|+++.+++.+++|+++.+.|.+.++|++..+|...++.+.++||+++.+ ++|||.|.+......++|++++.|+
T Consensus        34 l~~l~E~e~~l~~tvrkfa~~~i~Plv~~mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~  113 (398)
T KOG0139|consen   34 LQILSETEQMLQKTVRKFAQEEIKPLVREMDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDA  113 (398)
T ss_pred             hhhcCcHHHHHHHHHHHHHHHhcchHHHhhhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCc
Confidence            345899999999999999999999999999999999999999999999999977 9999999999999999999999999


Q ss_pred             chhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCCC
Q 041985          123 SCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNST  202 (415)
Q Consensus       123 ~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~~  202 (415)
                      ++++...+|+.+...+|..||+++||++|+|.+ .|+.+++||+|||+.|||+..+.|+|++++|.|+|||+|+||||+.
T Consensus       114 sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~  192 (398)
T KOG0139|consen  114 SVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-TGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAG  192 (398)
T ss_pred             cceeEEEecccccchHHHHhCcHHHHhhhcchh-hccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCc
Confidence            999999999999999999999999999888776 6777999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeCCC---CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCCC-CChHHHHHHHHH
Q 041985          203 FADLLVILARNTTT---KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPGF-KSFQDTITTLSI  278 (415)
Q Consensus       203 ~ad~~lv~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~~~~~~~~~~~~  278 (415)
                      .|++++|+|.+++.   +++++|+||+|+||+++....+++|+|++.++.+.||||+||++++||+. .|+++.+..|+-
T Consensus       193 ~A~~~lVfan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~  272 (398)
T KOG0139|consen  193 EADWFLVFANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNA  272 (398)
T ss_pred             ccceEEEEEecChhhccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHhcCc
Confidence            99999999999654   78999999999999999999999999999999999999999999999996 899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHH
Q 041985          279 SRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKG  358 (415)
Q Consensus       279 ~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~~a~~~~~~~aa~~~~~~~~~~~~~~~~K~  358 (415)
                      +|+.++++.+|+++.|+|.++.|+++|.+||++|.++|.+|++||++.+++|++|+++|++++.-+++.+...+++|+|+
T Consensus       273 gRIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaRlL~ynaAr~k~~G~pf~keAAMAKl  352 (398)
T KOG0139|consen  273 GRIGIGAQMLGLAQGCFDETIPYAQERLQFGKRLLDFQGLQHQIADMATEIEAARLLVYNAARMKDQGLPFVKEAAMAKL  352 (398)
T ss_pred             cceeehhhhhhhhHhHHHhhhHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccCccCCcchHHHHHHHH
Q 041985          359 WITSRARETVALGRELLGGNGISTDFHVAKINSLL  393 (415)
Q Consensus       359 ~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r~~~~~  393 (415)
                      ++++.|..+++.|+|++||.||++++|.+|.-|+.
T Consensus       353 ~ase~A~~~t~qCiq~lGG~Gyt~d~paek~yRDa  387 (398)
T KOG0139|consen  353 YASEVATKTTHQCIQWLGGVGYTKDFPAEKFYRDA  387 (398)
T ss_pred             hhhhhhhHHHHHHHHHHhcccccccccHHHHhhhc
Confidence            99999999999999999999999999999977664

>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism] Back     alignment and domain information
>PLN02526 acyl-coenzyme A oxidase Back     alignment and domain information
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>cd01151 GCD Glutaryl-CoA dehydrogenase Back     alignment and domain information
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>PLN02519 isovaleryl-CoA dehydrogenase Back     alignment and domain information
>PRK12341 putative acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit Back     alignment and domain information
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated Back     alignment and domain information
>cd01162 IBD Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>cd01156 IVD Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase Back     alignment and domain information
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01160 LCAD Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>PRK13026 acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2 Back     alignment and domain information
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit Back     alignment and domain information
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>PLN02636 acyl-coenzyme A oxidase Back     alignment and domain information
>PLN02876 acyl-CoA dehydrogenase Back     alignment and domain information
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5 Back     alignment and domain information
>PTZ00456 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C Back     alignment and domain information
>PLN02312 acyl-CoA oxidase Back     alignment and domain information
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product Back     alignment and domain information
>cd01159 NcnH Naphthocyclinone hydroxylase Back     alignment and domain information
>PRK11561 isovaleryl CoA dehydrogenase; Provisional Back     alignment and domain information
>cd00567 ACAD Acyl-CoA dehydrogenase Back     alignment and domain information
>PTZ00460 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01150 AXO Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>PTZ00457 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only] Back     alignment and domain information
>PLN02443 acyl-coenzyme A oxidase Back     alignment and domain information
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism] Back     alignment and domain information
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1 Back     alignment and domain information
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1 Back     alignment and domain information
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1 Back     alignment and domain information
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1 Back     alignment and domain information
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] Back     alignment and domain information
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] Back     alignment and domain information
>PTZ00457 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
2ix6_A449 Short Chain Specific Acyl-Coa Oxidase From Arabidop 0.0
2ix5_A436 Short Chain Specific Acyl-Coa Oxidase From Arabidop 0.0
3eom_A396 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehy 1e-56
3d6b_A395 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogena 1e-56
3gqt_A399 Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro 1e-56
3sf6_A403 Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro 8e-55
2eba_A385 Crystal Structure Of The Putative Glutaryl-coa Dehy 3e-54
2r0m_A394 The Effect Of A Glu370asp Mutation In Glutaryl-Coa 2e-53
1siq_A392 The Crystal Structure And Mechanism Of Human Glutar 2e-53
1sir_A394 The Crystal Structure And Mechanism Of Human Glutar 2e-53
3swo_A399 Crystal Structure Of A Glutaryl-Coa Dehydrogenase F 1e-48
3pfd_A393 Crystal Structure Of An Acyl-Coa Dehydrogenase From 1e-41
1jqi_A388 Crystal Structure Of Rat Short Chain Acyl-Coa Dehyd 2e-41
2jif_A404 Structure Of Human Short-Branched Chain Acyl-Coa De 2e-40
2vig_A391 Crystal Structure Of Human Short-Chain Acyl Coa Deh 9e-40
2dvl_A372 Crystal Structure Of Project Tt0160 From Thermus Th 2e-38
1ukw_A379 Crystal Structure Of Medium-Chain Acyl-Coa Dehydrog 2e-38
3mpi_A397 Structure Of The Glutaryl-Coenzyme A Dehydrogenase 2e-34
1ws9_A387 Crystal Structure Of Project Id Tt0172 From Thermus 2e-33
1ivh_A394 Structure Of Human Isovaleryl-coa Dehydrogenase At 2e-32
1buc_A383 Three-Dimensional Structure Of Butyryl-Coa Dehydrog 2e-32
2z1q_A 577 Crystal Structure Of Acyl Coa Dehydrogenase Length 2e-32
3owa_A 597 Crystal Structure Of Acyl-Coa Dehydrogenase Complex 4e-32
1udy_A396 Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaocta 1e-31
1ege_A396 Structure Of T255e, E376g Mutant Of Human Medium Ch 3e-31
2a1t_A421 Structure Of The Human Mcad:etf E165betaa Complex L 3e-31
1rx0_A393 Crystal Structure Of Isobutyryl-Coa Dehydrogenase C 3e-31
1egd_A396 Structure Of T255e, E376g Mutant Of Human Medium Ch 3e-31
3mdd_A385 Crystal Structures Of Medium Chain Acyl-Coa Dehydro 5e-31
2pg0_A385 Crystal Structure Of Acyl-Coa Dehydrogenase From Ge 1e-29
3nf4_A387 Crystal Structure Of Acyl-Coa Dehydrogenase From My 3e-29
3b96_A 587 Structural Basis For Substrate Fatty-Acyl Chain Spe 5e-26
2uxw_A 607 Crystal Structure Of Human Very Long Chain Acyl-coa 6e-26
3r7k_A403 Crystal Structure Of A Probable Acyl Coa Dehydrogen 2e-20
3oib_A403 Crystal Structure Of A Putative Acyl-Coa Dehydrogen 2e-13
1r2j_A366 Fkbi For Biosynthesis Of Methoxymalonyl Extender Un 5e-12
4hr3_A415 Structure Of A Putative Acyl-Coa Dehydrogenase From 4e-11
2fon_A 683 X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxid 6e-08
2wbi_A428 Crystal Structure Of Human Acyl-Coa Dehydrogenase 1 5e-07
1w07_A 659 Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 65 3e-06
4doy_A437 Crystal Structure Of Dibenzothiophene Desulfurizati 7e-05
3mkh_A438 Podospora Anserina Nitroalkane Oxidase Length = 438 6e-04
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 Length = 449 Back     alignment and structure 
Iteration: 1

 Score =  632 bits (1629), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/428 (71%), Positives = 346/428 (80%), Gaps = 21/428 (4%)
Query: 4   KSARSSYSNLPALDVSLAFPQATPATSKFPPCASDYYINFDGLLTSEEQAIRKKVRECAE 63
           K  +SSY +LP +++S+AFPQATPA S FPPC SDYY +F+ LLT EEQAIRKKVREC E
Sbjct: 14  KKVKSSYFDLPPMEMSVAFPQATPA-STFPPCTSDYY-HFNDLLTPEEQAIRKKVRECME 71
Query: 64  KELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKGYGCPGLCITGAAVALAEIARVDVS 123
           KE+API+ EYWEKAEFPF + PKLGA+ +A G+IKGYGCPGL IT  A+A AEIARVD S
Sbjct: 72  KEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAIATAEIARVDAS 131
Query: 124 CSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTAT 183
           CS+FILVHSSL MLTIA  GSE QK+KYLPS+AQL T+A WALTEPD GSDAS L TTAT
Sbjct: 132 CSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTAT 191
Query: 184 KVEGGWILEGQKRWVGNSTFADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLR 243
           KVEGGW + GQKRW+GNSTFADLL+I ARNTTT QIN FIVKK APGL ATKI NKIGLR
Sbjct: 192 KVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLKATKIPNKIGLR 251
Query: 244 IVQNGDVLLKNVFVPDEDRVPGFKSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLM 303
           +VQNGD+LL+NVFVPDEDR+PG  SFQDT   L++SR+MVAWQ IGI+MG+YDMCHRYL 
Sbjct: 252 MVQNGDILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLK 311
Query: 304 ERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWITSR 363
           ERKQFGAP A FQ+ QQKL QMLGN+QAM L GWR+C LYE G+MT G ASL K WI+S+
Sbjct: 312 ERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSK 371
Query: 364 ARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITGFASFKPA 407
           ARET +LGRELLGGNGI  DF VAK                IN+L+TGRE+TG ASFKPA
Sbjct: 372 ARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTGIASFKPA 431
Query: 408 VLTQQSRL 415
               +SRL
Sbjct: 432 T---RSRL 436
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa Length = 436 Back     alignment and structure
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 396 Back     alignment and structure
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 395 Back     alignment and structure
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei With Fragment (1,4-Dimethyl-1,2,3,4- Tetrahydroquinoxalin-6-Yl)methylamine Length = 399 Back     alignment and structure
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis Length = 403 Back     alignment and structure
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa Dehydrogenase From Thermus Thermophilus Length = 385 Back     alignment and structure
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa Dehydrogenase On Proton Transfer To The Dienolate Intermediate Length = 394 Back     alignment and structure
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 392 Back     alignment and structure
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 394 Back     alignment and structure
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis In Complex With Fadh2 Length = 399 Back     alignment and structure
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Reduced Flavin Adenine Dinucleotide Solved By Combined Iodide Ion Sad Mr Length = 393 Back     alignment and structure
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa Length = 388 Back     alignment and structure
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa Dehydrogenase (Acadsb) Length = 404 Back     alignment and structure
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa Dehydrogenase Length = 391 Back     alignment and structure
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus Thermophilus Hb8 Length = 372 Back     alignment and structure
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase From Thermus Thermophilus Hb8 Length = 379 Back     alignment and structure
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase Glutaryl-Coa Complex Length = 397 Back     alignment and structure
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus Thermophilus Hb8 Length = 387 Back     alignment and structure
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6 Angstroms Resolution: Structural Basis For Substrate Specificity Length = 394 Back     alignment and structure
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase From Megasphaera Elsdenii Length = 383 Back     alignment and structure
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase Length = 577 Back     alignment and structure
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With Fad From Bacillus Anthracis Length = 597 Back     alignment and structure
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396 Back     alignment and structure
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 Back     alignment and structure
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex Length = 421 Back     alignment and structure
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase Complexed With SubstrateLIGAND. Length = 393 Back     alignment and structure
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 Back     alignment and structure
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase From Pig Liver Mitochondria With And Without Substrate Length = 385 Back     alignment and structure
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Geobacillus Kaustophilus Length = 385 Back     alignment and structure
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Flavin Adenine Dinucleotide Length = 387 Back     alignment and structure
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain Specificity: Crystal Structure Of Human Very-Long-Chain Acyl-Coa Dehydrogenase Length = 587 Back     alignment and structure
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa Dehydrogenase (acadvl) Length = 607 Back     alignment and structure
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase From Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 403 Back     alignment and structure
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Smegmatis, Iodide Soak Length = 403 Back     alignment and structure
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of Fk520 Polyketide Immunosuppresant Length = 366 Back     alignment and structure
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Abscessus Length = 415 Back     alignment and structure
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) Length = 683 Back     alignment and structure
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11 Length = 428 Back     alignment and structure
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 659 Back     alignment and structure
>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization Enzyme C Length = 437 Back     alignment and structure
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase Length = 438 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 0.0
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 1e-177
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 1e-176
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 1e-173
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 1e-170
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 1e-169
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 9e-98
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 2e-96
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 3e-96
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 4e-96
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 4e-95
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 7e-95
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 3e-93
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 5e-93
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 4e-92
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 3e-89
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 2e-88
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 5e-88
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 9e-85
2uxw_A 607 VERY-long-chain specific acyl-COA dehydrogenase; f 2e-83
2z1q_A 577 Acyl-COA dehydrogenase; FAD, structural genomics, 5e-83
3owa_A 597 Acyl-COA dehydrogenase; structural genomics, cente 1e-82
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 1e-79
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 6e-79
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 1e-78
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 4e-77
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 1e-73
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 7e-73
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 3e-67
2ddh_A 661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 8e-46
1w07_A 659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 1e-44
2jbr_A422 P-hydroxyphenylacetate hydroxylase C2 oxygenase C; 9e-34
3djl_A 541 Protein AIDB; alpha helix, beta-barrel, FAD, flavo 1e-28
2rfq_A394 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1 1e-23
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 9e-23
2or0_A414 Hydroxylase; APC7385, rhodococcus SP. RHA1, struct 5e-19
3hwc_A515 Chlorophenol-4-monooxygenase component 2; beta bar 5e-18
2yyk_A481 4-hydroxyphenylacetate-3-hydroxylase; structurome, 1e-17
1u8v_A490 Gamma-aminobutyrate metabolism dehydratase/isomera 8e-17
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 4e-04
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436 Back     alignment and structure
 Score =  543 bits (1400), Expect = 0.0
 Identities = 301/427 (70%), Positives = 344/427 (80%), Gaps = 18/427 (4%)

Query: 1   GVNKSARSSYSNLPALDVSLAFPQATPATSKFPPCASDYYINFDGLLTSEEQAIRKKVRE 60
              K  +SSY +LP +++S+AFPQATPA S FPPC SDYY +F+ LLT EEQAIRKKVRE
Sbjct: 11  SNEKKVKSSYFDLPPMEMSVAFPQATPA-STFPPCTSDYY-HFNDLLTPEEQAIRKKVRE 68

Query: 61  CAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTIKGYGCPGLCITGAAVALAEIARV 120
           C EKE+API+ EYWEKAEFPF + PKLGA+ +A G+IKGYGCPGL IT  A+A AEIARV
Sbjct: 69  CMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAIATAEIARV 128

Query: 121 DVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRT 180
           D SCS+FILVHSSL MLTIA  GSE QK+KYLPS+AQL T+A WALTEPD GSDAS L T
Sbjct: 129 DASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGT 188

Query: 181 TATKVEGGWILEGQKRWVGNSTFADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKI 240
           TATKVEGGW + GQKRW+GNSTFADLL+I ARNTTT QIN FIVKK APGL ATKI NKI
Sbjct: 189 TATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLKATKIPNKI 248

Query: 241 GLRIVQNGDVLLKNVFVPDEDRVPGFKSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHR 300
           GLR+VQNGD+LL+NVFVPDEDR+PG  SFQDT   L++SR+MVAWQ IGI+MG+YDMCHR
Sbjct: 249 GLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHR 308

Query: 301 YLMERKQFGAPSATFQITQQKLAQMLGNIQAMILAGWRVCNLYEDGKMTAGHASLAKGWI 360
           YL ERKQFGAP A FQ+ QQKL QMLGN+QAM L GWR+C LYE G+MT G ASL K WI
Sbjct: 309 YLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWI 368

Query: 361 TSRARETVALGRELLGGNGISTDFHVAK----------------INSLLTGREITGFASF 404
           +S+ARET +LGRELLGGNGI  DF VAK                IN+L+TGRE+TG ASF
Sbjct: 369 SSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTGIASF 428

Query: 405 KPAVLTQ 411
           KPA  ++
Sbjct: 429 KPATRSR 435
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403 Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392 Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385 Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396 Back     alignment and structure
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399 Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372 Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391 Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387 Back     alignment and structure
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379 Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404 Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383 Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393 Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387 Back     alignment and structure
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396 Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393 Back     alignment and structure
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394 Back     alignment and structure
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397 Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366 Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607 Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577 Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597 Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439 Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385 Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403 Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403 Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439 Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438 Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395 Back     alignment and structure
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661 Back     alignment and structure
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659 Back     alignment and structure
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Length = 422 Back     alignment and structure
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Length = 541 Back     alignment and structure
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Length = 394 Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Length = 428 Back     alignment and structure
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Length = 414 Back     alignment and structure
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Length = 515 Back     alignment and structure
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Length = 481 Back     alignment and structure
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Length = 490 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query415
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 100.0
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 100.0
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 100.0
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 100.0
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 100.0
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 100.0
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 100.0
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 100.0
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 100.0
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 100.0
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 100.0
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 100.0
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 100.0
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 100.0
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 100.0
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 100.0
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 100.0
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 100.0
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 100.0
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 100.0
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 100.0
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 100.0
4hr3_A415 Putative acyl-COA dehydrogenase; ssgcid, seattle s 100.0
3owa_A 597 Acyl-COA dehydrogenase; structural genomics, cente 100.0
2z1q_A 577 Acyl-COA dehydrogenase; FAD, structural genomics, 100.0
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 100.0
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 100.0
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 100.0
2uxw_A 607 VERY-long-chain specific acyl-COA dehydrogenase; f 100.0
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 100.0
2or0_A414 Hydroxylase; APC7385, rhodococcus SP. RHA1, struct 100.0
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 100.0
2rfq_A394 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1 100.0
2jbr_A422 P-hydroxyphenylacetate hydroxylase C2 oxygenase C; 100.0
1w07_A 659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 100.0
3djl_A541 Protein AIDB; alpha helix, beta-barrel, FAD, flavo 100.0
2ddh_A 661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 100.0
1u8v_A490 Gamma-aminobutyrate metabolism dehydratase/isomera 100.0
2yyk_A481 4-hydroxyphenylacetate-3-hydroxylase; structurome, 100.0
3hwc_A515 Chlorophenol-4-monooxygenase component 2; beta bar 100.0
4g5e_A517 2,4,6-trichlorophenol 4-monooxygenase; oxidoreduct 99.96
3owa_A597 Acyl-COA dehydrogenase; structural genomics, cente 92.34
2uxw_A607 VERY-long-chain specific acyl-COA dehydrogenase; f 88.64
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Back     alignment and structure
Probab=100.00  E-value=5.1e-70  Score=543.11  Aligned_cols=397  Identities=75%  Similarity=1.230  Sum_probs=365.0

Q ss_pred             cCCCCCCCccCCCCCCCCCcCCCCCCcccccccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHH
Q 041985           10 YSNLPALDVSLAFPQATPATSKFPPCASDYYINFDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGA   89 (415)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~   89 (415)
                      +++.+.......++..++. ..+|+...|++ .|++.++++++++++.+++|+++++.|...++++.+.+|+++|++|++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~l~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~p~~~~~~l~e   97 (436)
T 2ix5_A           20 YFDLPPMEMSVAFPQATPA-STFPPCTSDYY-HFNDLLTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGA   97 (436)
T ss_dssp             SSSSCCCCHHHHCCSSCCT-TSCCCCCSCTT-CGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCGGGHHHHHT
T ss_pred             hcCCChhhhhhhccccCCC-CCCCCcccchh-hcCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHhcCCCCHHHHHHHHH
Confidence            3444444433334444443 77788888888 888899999999999999999999999888888888999999999999


Q ss_pred             cCCCCCcccccCCCCCCHHHHHHHHHHHHccCCchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCC
Q 041985           90 LNIAAGTIKGYGCPGLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEP  169 (415)
Q Consensus        90 ~Gl~~~~~~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~  169 (415)
                      .||+++.+++|||.|++..+.+.++|++++.|+++++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||
T Consensus        98 ~Gl~~l~~pe~GG~G~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~gt~~qk~~~l~~l~~G~~~~a~a~tEp  177 (436)
T 2ix5_A           98 MGVAGGSIKGYGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEP  177 (436)
T ss_dssp             TTCTTTTCCSTTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBT
T ss_pred             cCCCcCcCCCCCCCCCCHHHHHHHHHHHHhhCccHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCC
Confidence            99999966699999999999999999999999988877777766777888999999999999999999999999999999


Q ss_pred             CCCCCcCCCceEEEEeCCEEEEeeeeeeccCCCCCCEEEEEEEeCCCCCeeEEEEeCCCCCeeeeecCCcccccccCccc
Q 041985          170 DYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILARNTTTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGD  249 (415)
Q Consensus       170 ~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~~~ad~~lv~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~  249 (415)
                      +.|||+..+.|+|++++|||+|||+|.||||+..||+++|+|++++++++++|+||++.|||++.+.|+++|++++++++
T Consensus       178 ~~GSd~~~~~t~A~~~gdg~vLnG~K~~is~a~~Ad~~lv~Ar~~~~~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~  257 (436)
T 2ix5_A          178 DNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLKATKIPNKIGLRMVQNGD  257 (436)
T ss_dssp             TBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEEETTTSSEEEEEEETTCTTEEEEECCCBSSSTTSCEEE
T ss_pred             CCCCCcccceEEEEEeCCEEEEeeeccCCCCCcccCEEEEEEEECCCCcEEEEEEECCCCCeEeeccccccCCCcCCcee
Confidence            99999999999999999999999999999999999999999999754678999999999999999999999999999999


Q ss_pred             EEecceeeCCCCCcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhHHHHHHHHHHHHH
Q 041985          250 VLLKNVFVPDEDRVPGFKSFQDTITTLSISRLMVAWQSIGIAMGVYDMCHRYLMERKQFGAPSATFQITQQKLAQMLGNI  329 (415)
Q Consensus       250 v~f~~v~Vp~~~vlg~~~~~~~~~~~~~~~r~~~~a~~~G~a~~al~~a~~~a~~R~~fg~~l~~~~~iq~~la~~~~~~  329 (415)
                      |.||||+||++++|+..+++......++.+|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.+++
T Consensus       258 v~fddv~VP~~~~lg~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfG~pi~~~q~vq~~la~~~~~~  337 (436)
T 2ix5_A          258 ILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNV  337 (436)
T ss_dssp             EEEEEEEEEGGGBCTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHH
T ss_pred             EEeccEEECHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhhcHHHHHHHHHHHHHH
Confidence            99999999999999887888888888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcchHHH----------------HHHHH
Q 041985          330 QAMILAGWRVCNLYEDGKMTAGHASLAKGWITSRARETVALGRELLGGNGISTDFHVAK----------------INSLL  393 (415)
Q Consensus       330 ~a~~~~~~~aa~~~~~~~~~~~~~~~~K~~~~~~a~~v~~~~~~i~Gg~g~~~~~~~~r----------------~~~~~  393 (415)
                      +++|++++++++.++.+.+....++++|.++++.+.++++.++|+|||.||+.++|++|                +++.+
T Consensus       338 ~aar~l~~~aa~~~d~g~~~~~~as~aK~~a~e~a~~v~~~a~q~~Gg~G~~~e~~l~r~~Rda~~~~i~~Gt~ei~~~~  417 (436)
T 2ix5_A          338 QAMFLMGWRLCKLYETGQMTPGQASLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLV  417 (436)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGBGGGSHHHHHHHHHHHHHSSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCChHHHHHHHhhcceeecCHHHHHHHH
Confidence            99999999999999988776777899999999999999999999999999999999999                89999


Q ss_pred             HHHHHhCCCCCCccc
Q 041985          394 TGREITGFASFKPAV  408 (415)
Q Consensus       394 i~~~~~g~~~~~~~~  408 (415)
                      |+|.++|+|+|+|.+
T Consensus       418 iar~llgl~~~~~~~  432 (436)
T 2ix5_A          418 TGREVTGIASFKPAT  432 (436)
T ss_dssp             HHHHHHSCCCCSCC-
T ss_pred             HHHHHhCCccccchh
Confidence            999999999998765
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Back     alignment and structure
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Back     alignment and structure
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Back     alignment and structure
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus} Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Back     alignment and structure
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Back     alignment and structure
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Back     alignment and structure
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Back     alignment and structure
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Back     alignment and structure
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Back     alignment and structure
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Back     alignment and structure
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Back     alignment and structure
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Back     alignment and structure
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134} Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 415
d1ivha2236 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM 1e-48
d1ukwa2227 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydroge 4e-43
d1rx0a2231 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {H 8e-43
d3mdea2231 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydroge 1e-41
d2d29a2233 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus 2e-41
d1jqia2231 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM do 9e-41
d1siqa2236 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH 4e-37
d1buca2232 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM do 2e-34
d2ddha3267 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, 6e-22
d1w07a3271 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domai 9e-22
d2c12a2259 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium ox 1e-17
d1u8va2275 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase 5e-17
d1r2ja2210 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygro 9e-17
d1ukwa1152 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydro 2e-12
d1buca1151 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C- 5e-12
d2d29a1153 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Therm 1e-11
d1siqa1154 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GC 2e-11
d1w07a1189 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, do 4e-11
d2ddha1183 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase- 1e-10
d2c12a1170 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium 2e-10
d1jqia1153 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C- 2e-09
d1ivha1151 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, 5e-09
d1rx0a1153 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase 4e-08
d3mdea1154 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydro 6e-07
d1r2ja1153 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hy 2e-06
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  163 bits (414), Expect = 1e-48
 Identities = 62/229 (27%), Positives = 116/229 (50%), Gaps = 9/229 (3%)

Query: 43  FDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPF--QVIPKLGALNIAAGTIKGY 100
            +GL + E++ +R+ + +  ++ LAP   E     EF    +   +LG L +   T    
Sbjct: 5   INGL-SEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQ 63

Query: 101 GCP-GLCITGAAVALAEIARVDVSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLK 159
               GL      + + EI+R   +       HS+L +  + + G+E QK+KYLP +   +
Sbjct: 64  YGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGE 123

Query: 160 TIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNSTFADLLVILARNT----- 214
            I + A++EP+ GSD  +++  A K    +IL G K W+ N   AD+L++ A+       
Sbjct: 124 YIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVP 183

Query: 215 TTKQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRV 263
            ++ I AFIV+K  PG + +K  +K+G+R     +++ ++  +P  + +
Sbjct: 184 ASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANIL 232
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Length = 227 Back     information, alignment and structure
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 231 Back     information, alignment and structure
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Length = 231 Back     information, alignment and structure
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 233 Back     information, alignment and structure
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 231 Back     information, alignment and structure
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Length = 232 Back     information, alignment and structure
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 267 Back     information, alignment and structure
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 271 Back     information, alignment and structure
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 259 Back     information, alignment and structure
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Length = 275 Back     information, alignment and structure
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 210 Back     information, alignment and structure
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Length = 152 Back     information, alignment and structure
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Length = 151 Back     information, alignment and structure
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 153 Back     information, alignment and structure
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 154 Back     information, alignment and structure
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 189 Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 183 Back     information, alignment and structure
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 170 Back     information, alignment and structure
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 153 Back     information, alignment and structure
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 153 Back     information, alignment and structure
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 154 Back     information, alignment and structure
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 153 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query415
d3mdea2231 Medium chain acyl-CoA dehydrogenase, NM domains {P 100.0
d1ukwa2227 Medium chain acyl-CoA dehydrogenase, NM domains {T 100.0
d2d29a2233 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 100.0
d1jqia2231 Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus 100.0
d1siqa2236 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 100.0
d1ivha2236 Isovaleryl-coa dehydrogenase, NM domains {Human (H 100.0
d1rx0a2231 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 100.0
d1buca2232 Butyryl-CoA dehydrogenase, NM domains {Megasphaera 100.0
d1r2ja2210 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 100.0
d2c12a2259 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 100.0
d2ddha3267 Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 { 99.97
d1w07a3271 Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale 99.96
d1siqa1154 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 99.94
d1r2ja1153 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 99.92
d1ivha1151 Isovaleryl-CoA dehydrogenase, C-domain {Human (Hom 99.91
d1jqia1153 Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus n 99.91
d3mdea1154 Medium chain acyl-CoA dehydrogenase, C-domain {Pig 99.9
d2d29a1153 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 99.9
d1ukwa1152 Medium chain acyl-CoA dehydrogenase, C-domain {The 99.9
d2c12a1170 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 99.89
d1rx0a1153 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 99.89
d1buca1151 Butyryl-CoA dehydrogenase, C-domain {Megasphaera e 99.88
d1u8va2275 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains 99.87
d1w07a1189 Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale 99.81
d2ddha1183 Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 { 99.79
d1u8va1215 4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal 97.01
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=3.1e-46  Score=339.18  Aligned_cols=222  Identities=27%  Similarity=0.479  Sum_probs=210.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHHcCCCCCcc-cccCCCCCCHHHHHHHHHHHHccC
Q 041985           43 FDGLLTSEEQAIRKKVRECAEKELAPIVAEYWEKAEFPFQVIPKLGALNIAAGTI-KGYGCPGLCITGAAVALAEIARVD  121 (415)
Q Consensus        43 ~~~~l~~~~~~l~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~~  121 (415)
                      |||.||++|+++++.+++|+++++.|.+.++|+++.+|+++|++|++.||+++.+ ++|||.|.+..+.+.+.|++++.+
T Consensus         2 mdf~lseeq~~l~~~~r~f~~~~~~p~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~l~~~~   81 (231)
T d3mdea2           2 FSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFGGLGLGIIDSCLITEELAYGC   81 (231)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCCCCHHHHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHHcCCCCHHHHHHHHHhhhccccccccccCccccccccccchhhhcccc
Confidence            7899999999999999999999999999999999999999999999999999977 999999999999999999999999


Q ss_pred             CchhhHHHHhhhhHHHHHHccCCHHHHHhHhHHHhcccceeEEEecCCCCCCCcCCCceEEEEeCCEEEEeeeeeeccCC
Q 041985          122 VSCSSFILVHSSLAMLTIAQYGSEEQKQKYLPSMAQLKTIASWALTEPDYGSDASALRTTATKVEGGWILEGQKRWVGNS  201 (415)
Q Consensus       122 ~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~  201 (415)
                      .++++.+.++. .+...|..+|+++||++|+|++++|++++|+|+|||++|||+.+++|+|++++|||+|||+|+||||+
T Consensus        82 ~~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~K~~vt~~  160 (231)
T d3mdea2          82 TGVQTAIEANT-LGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNG  160 (231)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHTTSCCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred             ccccccccccc-ccchhhhhcCcccccccccchhcCCceEEEEEecCCCCCCCccCCEEEEEEECCEEEEEEEEEEeCCc
Confidence            98888776665 56778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCCC------CCeeEEEEeCCCCCeeeeecCCcccccccCcccEEecceeeCCCCCcCC
Q 041985          202 TFADLLVILARNTTT------KQINAFIVKKHAPGLTATKIENKIGLRIVQNGDVLLKNVFVPDEDRVPG  265 (415)
Q Consensus       202 ~~ad~~lv~a~~~~~------~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~  265 (415)
                      +.+|+++++|+++.+      .++++|+||++.|||++.+.|+++|+|++++++|.||||+||++++||.
T Consensus       161 ~~a~~~~~~a~t~~~~~~~~~~~~~~~lv~~d~~Gv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lG~  230 (231)
T d3mdea2         161 GKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTG  230 (231)
T ss_dssp             TTEEEEEEEEECCCCTTSCHHHHEEEEEEETTSTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGBSSC
T ss_pred             hhccccceecccccccccccccceEEEEEeCCCCCeEEccCcccccCCCCCeEEEEEeeEEEcHHhEecC
Confidence            999999999998643      3578999999999999999999999999999999999999999999985
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Back     information, alignment and structure
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1u8va1 a.29.3.1 (A:276-490) 4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal domain {Clostridium aminobutyricum [TaxId: 33953]} Back     information, alignment and structure