Citrus Sinensis ID: 041989

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MESGTRQGALSPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMRMRLISPSSSSSHN
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHcccccEcccccccccHHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mesgtrqgalspcaACKLIRRRCAqdcvfapyfpadepqkfasvHKVFGASNVNKMLQELQEHQRSEAVSSMVYEanarfhdpvrgcVGAISSLQQQVESLQAQLALAQAEVEQMRMRlispssssshn
Flexible Loop (DISEMBL)
mesgtrqgalspCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMRMRlispssssshn
Low Complexity Region (SEG)
MESGTRQGALSPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEHQRSEAVSSMVYEANARFHDPVRGCVGAIsslqqqveslqaqlalaqaeveqMRMRLIspsssssHN
Disordered region (IsUnstruct)
**********SPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNV******************MVYEANARFHDPVRGCVGAISSLQ**********************************
Disordered Region (DISOPRED)
*************AACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQ***************
Disordered Region (DISEMBL)
**********SPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMRMRL**********
Disordered Region (DISPRO)
*********LSPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMRMRL**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESGTRQGALSPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEHQRSEAVSSMVYEANARFHDPVRGCVGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxLISPSSSSSHN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	129	2.2.26 [Sep-21-2011]
Q9SHE9	172	LOB domain-containing pro	yes	no	0.906	0.680	0.811	5e-45
Q9SA51	165	LOB domain-containing pro	no	no	0.891	0.696	0.692	2e-42
Q8LBW3	193	LOB domain-containing pro	no	no	0.837	0.559	0.712	2e-41
Q9SK08	232	LOB domain-containing pro	no	no	0.844	0.469	0.633	4e-36
Q9LQR0	190	LOB domain-containing pro	no	no	0.844	0.573	0.642	5e-36
Q9AT61	268	LOB domain-containing pro	no	no	0.844	0.406	0.587	8e-36
Q9FML4	186	Protein LATERAL ORGAN BOU	no	no	0.790	0.548	0.637	6e-35
Q8L8Q3	159	LOB domain-containing pro	no	no	0.790	0.641	0.627	2e-34
Q32SG3	260	LOB domain-containing pro	N/A	no	0.844	0.419	0.587	9e-34
Q9FKZ3	313	LOB domain-containing pro	no	no	0.790	0.325	0.617	4e-33

>sp|Q9SHE9|LBD4_ARATH LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1

 Score =  179 bits (453), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 95/117 (81%), Positives = 105/117 (89%)

Query: 2   ESGTRQGALSPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQ 61
           ES  +QGA SPCAACKL+RRRCAQDCVF+PYFPADEPQKFA+VH+VFGASNVNKMLQEL 
Sbjct: 3   ESSRKQGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELP 62

Query: 62  EHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMRMR 118
            HQR +AVSSMVYEANAR  DPV GCVGAISSLQQQ++ LQAQLALAQAEV  +R+R
Sbjct: 63  IHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVR 119

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SA51|LBD3_ARATH LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1

 Score =  171 bits (432), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/117 (69%), Positives = 94/117 (80%), Gaps = 2/117 (1%)

Query: 2   ESGTRQG-ALSPCAACKLIRRRCAQD-CVFAPYFPADEPQKFASVHKVFGASNVNKMLQE 59
           + G R G  +SPCA CKL+RR+C +D CVFAPYFPA EP KFA VHK+FGASNVNKMLQE
Sbjct: 3   QKGHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQE 62

Query: 60  LQEHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMR 116
           L E+ RS+AV SMVYEANAR  DPV GCVG ISSL +Q+E+LQ QLA AQAE+  +R
Sbjct: 63  LSENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIR 119

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBW3|LBD12_ARATH LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2

 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 77/108 (71%), Positives = 93/108 (86%)

Query: 11  SPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEHQRSEAVS 70
           SPCA+CKL+RRRCA+DC+FAPYFP D+P KFA VHKVFGASNV+KMLQEL  HQR++AV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 71  SMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMRMR 118
           S+V+EANAR  DPV GCVGAIS LQ QV  LQ QLA+AQAE+  ++M+
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 114

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK08|LBD11_ARATH LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2

 Score =  149 bits (377), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 69/109 (63%), Positives = 82/109 (75%)

Query: 10  LSPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEHQRSEAV 69
           LSPCAACK++RRRCA  CV APYFP  +P KF   H+VFGASN+ K LQEL E QR++AV
Sbjct: 53  LSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAV 112

Query: 70  SSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMRMR 118
           +SMVYEA AR  DPV GC GAI  LQ+QV  LQAQLA  Q E+  M+++
Sbjct: 113 NSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQ 161

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQR0|LBD1_ARATH LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1

 Score =  149 bits (376), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 70/109 (64%), Positives = 83/109 (76%)

Query: 10  LSPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEHQRSEAV 69
           LSPCAACK++RRRCA+ CV APYFP  +P KF   H+VFGASN+ K LQEL E QR++AV
Sbjct: 31  LSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAV 90

Query: 70  SSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMRMR 118
           +SMVYEA AR  DPV GC GAI  LQ+QV  LQAQLA AQ E+  M+ +
Sbjct: 91  NSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQ 139

Arabidopsis thaliana (taxid: 3702)

>sp|Q9AT61|LBD13_ARATH LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2

 Score =  148 bits (374), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 64/109 (58%), Positives = 85/109 (77%)

Query: 4   GTRQGALSPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEH 63
           GT    ++PCAACKL+RRRCA++C F+PYF   EP KFA+VHKVFGASNV+KML E+ E 
Sbjct: 44  GTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGES 103

Query: 64  QRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEV 112
           QR +A +S+VYEAN R  DP+ GC+GAIS+LQ  ++SLQ++L   + E+
Sbjct: 104 QRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEI 152

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FML4|LOB_ARATH Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1

 Score =  145 bits (367), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 65/102 (63%), Positives = 79/102 (77%)

Query: 11  SPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEHQRSEAVS 70
           SPCAACK +RR+C   C+FAPYFP +EP KFA+VHK+FGASNV K+L EL  HQR +AV+
Sbjct: 10  SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query: 71  SMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEV 112
           S+ YEA AR  DPV GCVGAIS LQ+QV  LQ +L  A A++
Sbjct: 70  SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADL 111

Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L8Q3|LBD25_ARATH LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3

 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 64/102 (62%), Positives = 80/102 (78%)

Query: 11  SPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEHQRSEAVS 70
           SPCAACK +RR+C  DCVFAPYFP +EP KFA+VH++FGASNV+K+L E+  HQR +AV+
Sbjct: 38  SPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVN 97

Query: 71  SMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEV 112
           S+ YEA AR  DPV GCVGAIS LQ+QV  LQ +L    A++
Sbjct: 98  SLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADL 139

Arabidopsis thaliana (taxid: 3702)

>sp|Q32SG3|LBD6_MAIZE LOB domain-containing protein 6 OS=Zea mays GN=LBD6 PE=1 SV=1

 Score =  142 bits (357), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 64/109 (58%), Positives = 77/109 (70%)

Query: 8   GALSPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEHQRSE 67
           G  SPCAACK +RR+C  DCVFAPYFP D PQKF  VH+VFGASNV K+L EL   QR +
Sbjct: 29  GTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQRED 88

Query: 68  AVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMR 116
           AV+S+ YEA+ R  DPV GCVG IS LQ  +  LQ  LA A+ E+ + +
Sbjct: 89  AVNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQ 137

Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes.

Zea mays (taxid: 4577)

>sp|Q9FKZ3|LBD36_ARATH LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1

 Score =  139 bits (351), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 63/102 (61%), Positives = 78/102 (76%)

Query: 11  SPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEHQRSEAVS 70
           SPCAACK +RR+C Q+CVFAPYFP D+PQKFA VHKVFGASNV K+L EL  +QR +AV+
Sbjct: 6   SPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAVN 65

Query: 71  SMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEV 112
           S+ YEA AR  DPV GCVG IS LQ +++ +   L  A+ E+
Sbjct: 66  SLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKEL 107

Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
255544668	147	LOB domain-containing protein, putative	0.968	0.850	0.848	4e-55
359494441	170	PREDICTED: LOB domain-containing protein	0.968	0.735	0.816	4e-54
224083986	146	predicted protein [Populus trichocarpa]	0.968	0.856	0.824	1e-53
356525770	177	PREDICTED: LOB domain-containing protein	0.953	0.694	0.829	1e-53
224096640	146	predicted protein [Populus trichocarpa]	0.961	0.849	0.814	9e-53
359807226	178	uncharacterized protein LOC100790989 [Gl	0.953	0.691	0.804	2e-51
449464650	173	PREDICTED: LOB domain-containing protein	0.945	0.705	0.822	2e-50
356521600	159	PREDICTED: LOB domain-containing protein	0.976	0.792	0.746	2e-50
351722989	159	uncharacterized protein LOC100306560 [Gl	0.976	0.792	0.746	2e-50
224053699	170	predicted protein [Populus trichocarpa]	0.906	0.688	0.811	7e-50

>gi|255544668|ref|XP_002513395.1| LOB domain-containing protein, putative [Ricinus communis] gi|223547303|gb|EEF48798.1| LOB domain-containing protein, putative [Ricinus communis]

 Score =  219 bits (557), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 106/125 (84%), Positives = 113/125 (90%)

Query: 2   ESGTRQGALSPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQ 61
           ESG +QGALSPCAACKL+RRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQEL 
Sbjct: 3   ESGRKQGALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELP 62

Query: 62  EHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMRMRLIS 121
           EHQRS+AVSSMVYEANAR  DPV GCVGAISSLQQQ++SLQ QLA+AQAEV  MRMR   
Sbjct: 63  EHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLAIAQAEVVHMRMRQFG 122

Query: 122 PSSSS 126
            SSS+
Sbjct: 123 TSSSN 127

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494441|ref|XP_002264049.2| PREDICTED: LOB domain-containing protein 4-like [Vitis vinifera] gi|147845397|emb|CAN83356.1| hypothetical protein VITISV_026098 [Vitis vinifera] gi|296082729|emb|CBI21734.3| unnamed protein product [Vitis vinifera]

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 102/125 (81%), Positives = 112/125 (89%)

Query: 2   ESGTRQGALSPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQ 61
           ESG +QGA+SPCAACKL+RRRCAQDCVFAPYFPADEP KFASVHKVFGASNVNKMLQEL 
Sbjct: 3   ESGRKQGAVSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELP 62

Query: 62  EHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMRMRLIS 121
           EHQRS+AVSSMVYEANAR  DPV GCVGAISSLQQQ+++LQ QLAL QAEV QMRM   +
Sbjct: 63  EHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALVQAEVVQMRMNQFT 122

Query: 122 PSSSS 126
            S+S+
Sbjct: 123 SSTSN 127

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083986|ref|XP_002307194.1| predicted protein [Populus trichocarpa] gi|222856643|gb|EEE94190.1| predicted protein [Populus trichocarpa]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 103/125 (82%), Positives = 111/125 (88%)

Query: 2   ESGTRQGALSPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQ 61
           ESG + GALSPCAACKL+RRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQEL 
Sbjct: 3   ESGRKHGALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELP 62

Query: 62  EHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMRMRLIS 121
           EHQR +AVSSMVYEANAR  DPV GCVGAISSLQQQ+ SLQ QLA+AQAEV  MRMR  +
Sbjct: 63  EHQRRDAVSSMVYEANARVRDPVYGCVGAISSLQQQINSLQTQLAVAQAEVVHMRMREFT 122

Query: 122 PSSSS 126
            SS++
Sbjct: 123 SSSNT 127

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525770|ref|XP_003531496.1| PREDICTED: LOB domain-containing protein 4-like [Glycine max]

 Score =  213 bits (543), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 102/123 (82%), Positives = 108/123 (87%)

Query: 2   ESGTRQGALSPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQ 61
           ESG +QG +SPCAACKL+RRRC +DCVFAPYFPADEPQKF SVHKVFGASNVNKMLQEL 
Sbjct: 3   ESGRKQGTMSPCAACKLLRRRCTRDCVFAPYFPADEPQKFGSVHKVFGASNVNKMLQELP 62

Query: 62  EHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMRMRLIS 121
           EHQRS+AVSSMVYEANAR  DPV GCVGAISSLQQQV+ LQ QLALAQAEV  MRMR  S
Sbjct: 63  EHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAEVVHMRMRQFS 122

Query: 122 PSS 124
           P S
Sbjct: 123 PPS 125

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096640|ref|XP_002310683.1| predicted protein [Populus trichocarpa] gi|222853586|gb|EEE91133.1| predicted protein [Populus trichocarpa]

 Score =  211 bits (536), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 101/124 (81%), Positives = 112/124 (90%)

Query: 2   ESGTRQGALSPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQ 61
           ESG + GALSPCAACKL+RRRCAQDC+FAPYFPADEPQKFASVHKVFGASNVNKMLQEL 
Sbjct: 3   ESGRKLGALSPCAACKLLRRRCAQDCMFAPYFPADEPQKFASVHKVFGASNVNKMLQELP 62

Query: 62  EHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMRMRLIS 121
           EHQRS+AVSSMVYEANAR  DPV GCVGAISSLQ+Q++SLQ QLA+AQAEV  MR+R  +
Sbjct: 63  EHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQKQIDSLQTQLAIAQAEVVHMRVRQFT 122

Query: 122 PSSS 125
            SS+
Sbjct: 123 SSSN 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807226|ref|NP_001241363.1| uncharacterized protein LOC100790989 [Glycine max] gi|255645217|gb|ACU23106.1| unknown [Glycine max]

 Score =  206 bits (524), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 99/123 (80%), Positives = 105/123 (85%)

Query: 2   ESGTRQGALSPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQ 61
           ESG +QG +SPCAACKL+RRRC  DC FAPYFPADEPQKF SVHKVFGASNVNKML+EL 
Sbjct: 3   ESGRKQGTMSPCAACKLLRRRCTPDCAFAPYFPADEPQKFDSVHKVFGASNVNKMLKELP 62

Query: 62  EHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMRMRLIS 121
           EHQRS+AVSSMVYEA AR  DPV GCVGAISSLQQQV+ LQ QLALAQAEV  MRMR  S
Sbjct: 63  EHQRSDAVSSMVYEAKARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAEVVHMRMRQFS 122

Query: 122 PSS 124
           P S
Sbjct: 123 PLS 125

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464650|ref|XP_004150042.1| PREDICTED: LOB domain-containing protein 4-like [Cucumis sativus] gi|449502504|ref|XP_004161659.1| PREDICTED: LOB domain-containing protein 4-like [Cucumis sativus]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 102/124 (82%), Positives = 109/124 (87%), Gaps = 2/124 (1%)

Query: 3   SGTRQG-ALSPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQ 61
           SG +QG +LSPCAACKL+RRRCAQDCVFAPYFPADEP KFASVHKVFGASNVNKMLQEL 
Sbjct: 5   SGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELP 64

Query: 62  EHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMRMRLIS 121
           E QRS+AVSSMVYEANAR  DPV GCVGAISSLQQQ++ LQ QLA+AQAEV  MRMR   
Sbjct: 65  EQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRHF- 123

Query: 122 PSSS 125
           PSSS
Sbjct: 124 PSSS 127

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521600|ref|XP_003529442.1| PREDICTED: LOB domain-containing protein 4-like [Glycine max]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/130 (74%), Positives = 111/130 (85%), Gaps = 4/130 (3%)

Query: 2   ESGTRQGALSPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQ 61
           + G +QGA SPCAACKL+RRRCAQDCVFAPYFPADEPQKFA+VHKVFGASNVNKMLQ+L 
Sbjct: 3   DGGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLA 62

Query: 62  EHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMRMR--- 118
           EHQR +AVSSMVYEANAR  DPV GCVGAISSLQQQ++ LQ QLA+AQAE   +R+R   
Sbjct: 63  EHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQTA 122

Query: 119 -LISPSSSSS 127
            L SP+S ++
Sbjct: 123 SLYSPTSPTN 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722989|ref|NP_001236751.1| uncharacterized protein LOC100306560 [Glycine max] gi|255628883|gb|ACU14786.1| unknown [Glycine max]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/130 (74%), Positives = 111/130 (85%), Gaps = 4/130 (3%)

Query: 2   ESGTRQGALSPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQ 61
           + G +QGA SPCAACKL+RRRCAQDCVFAPYFPADEPQKFA+VHKVFGASNVNKMLQ+L 
Sbjct: 3   DGGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLP 62

Query: 62  EHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMRMR--- 118
           EHQR +AVSSMVYEANAR  DPV GCVGAISSLQQQ++ LQ QLA+AQAE   +R+R   
Sbjct: 63  EHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQAA 122

Query: 119 -LISPSSSSS 127
            L SP+S ++
Sbjct: 123 SLYSPTSPTN 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053699|ref|XP_002297935.1| predicted protein [Populus trichocarpa] gi|222845193|gb|EEE82740.1| predicted protein [Populus trichocarpa]

 Score =  201 bits (511), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 95/117 (81%), Positives = 105/117 (89%)

Query: 2   ESGTRQGALSPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQ 61
           E G +QGA +PCAACKL+RRRCAQDCVFAPYFPADEPQKFA+VHKVFGASNVNKMLQEL 
Sbjct: 3   EGGRKQGAPAPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELP 62

Query: 62  EHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMRMR 118
            HQR +AVSSMVYEANAR  DPV GCVGAISSLQQQ+++LQ QLALAQAEV  +R+R
Sbjct: 63  VHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR 119

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
TAIR|locus:2197500	172	LBD4 "LOB domain-containing pr	0.697	0.523	0.833	1.9e-37
TAIR|locus:2060842	193	ASL5 [Arabidopsis thaliana (ta	0.627	0.419	0.765	1.3e-31
TAIR|locus:2032931	165	ASL9 "ASYMMETRIC LEAVES 2-like	0.697	0.545	0.717	1.6e-31
TAIR|locus:2061828	224	LBD15 "LOB domain-containing p	0.635	0.366	0.695	1.2e-28
TAIR|locus:2089184	159	LBD25 "LOB domain-containing p	0.627	0.509	0.679	1.5e-28
TAIR|locus:2174989	313	ASL1 "ASYMMETRIC LEAVES 2-like	0.627	0.258	0.703	1.9e-28
TAIR|locus:2065769	268	LBD13 "AT2G30340" [Arabidopsis	0.682	0.328	0.636	3.9e-28
TAIR|locus:2161982	186	LOB "LATERAL ORGAN BOUNDARIES"	0.627	0.435	0.679	3.9e-28
TAIR|locus:2034163	199	AS2 "ASYMMETRIC LEAVES 2" [Ara	0.627	0.407	0.679	8.2e-28
TAIR|locus:2026611	190	LBD1 "LOB domain-containing pr	0.635	0.431	0.682	2.2e-27

TAIR|locus:2197500 LBD4 "LOB domain-containing protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 75/90 (83%), Positives = 81/90 (90%)

Query:     2 ESGTRQGALSPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQ 61
             ES  +QGA SPCAACKL+RRRCAQDCVF+PYFPADEPQKFA+VH+VFGASNVNKMLQEL 
Sbjct:     3 ESSRKQGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELP 62

Query:    62 EHQRSEAVSSMVYEANARFHDPVRGCVGAI 91
              HQR +AVSSMVYEANAR  DPV GCVGAI
Sbjct:    63 IHQRGDAVSSMVYEANARVRDPVYGCVGAI 92

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2060842 ASL5 [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 62/81 (76%), Positives = 73/81 (90%)

Query:    11 SPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEHQRSEAVS 70
             SPCA+CKL+RRRCA+DC+FAPYFP D+P KFA VHKVFGASNV+KMLQEL  HQR++AV+
Sbjct:     7 SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query:    71 SMVYEANARFHDPVRGCVGAI 91
             S+V+EANAR  DPV GCVGAI
Sbjct:    67 SLVFEANARVRDPVYGCVGAI 87

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=TAS

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0010016 "shoot system morphogenesis" evidence=IMP

TAIR|locus:2032931 ASL9 "ASYMMETRIC LEAVES 2-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 66/92 (71%), Positives = 74/92 (80%)

Query:     2 ESGTRQG-ALSPCAACKLIRRRCAQD-CVFAPYFPADEPQKFASVHKVFGASNVNKMLQE 59
             + G R G  +SPCA CKL+RR+C +D CVFAPYFPA EP KFA VHK+FGASNVNKMLQE
Sbjct:     3 QKGHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQE 62

Query:    60 LQEHQRSEAVSSMVYEANARFHDPVRGCVGAI 91
             L E+ RS+AV SMVYEANAR  DPV GCVG I
Sbjct:    63 LSENHRSDAVDSMVYEANARIQDPVYGCVGTI 94

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2061828 LBD15 "LOB domain-containing protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 57/82 (69%), Positives = 69/82 (84%)

Query:    10 LSPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEHQRSEAV 69
             ++PCAACKL+RRRCAQ+C F+PYF   EP KFASVHKVFGASNV+KML E+ E QR++A 
Sbjct:    43 ITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAA 102

Query:    70 SSMVYEANARFHDPVRGCVGAI 91
             +S+VYEAN R  DPV GC+GAI
Sbjct:   103 NSLVYEANVRLRDPVYGCMGAI 124

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2089184 LBD25 "LOB domain-containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 55/81 (67%), Positives = 67/81 (82%)

Query:    11 SPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEHQRSEAVS 70
             SPCAACK +RR+C  DCVFAPYFP +EP KFA+VH++FGASNV+K+L E+  HQR +AV+
Sbjct:    38 SPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVN 97

Query:    71 SMVYEANARFHDPVRGCVGAI 91
             S+ YEA AR  DPV GCVGAI
Sbjct:    98 SLAYEAEARLKDPVYGCVGAI 118

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2174989 ASL1 "ASYMMETRIC LEAVES 2-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 57/81 (70%), Positives = 66/81 (81%)

Query:    11 SPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEHQRSEAVS 70
             SPCAACK +RR+C Q+CVFAPYFP D+PQKFA VHKVFGASNV K+L EL  +QR +AV+
Sbjct:     6 SPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAVN 65

Query:    71 SMVYEANARFHDPVRGCVGAI 91
             S+ YEA AR  DPV GCVG I
Sbjct:    66 SLFYEAEARLRDPVYGCVGLI 86

GO:0005634 "nucleus" evidence=ISM

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0009954 "proximal/distal pattern formation" evidence=IGI

GO:0048441 "petal development" evidence=IGI

TAIR|locus:2065769 LBD13 "AT2G30340" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 56/88 (63%), Positives = 70/88 (79%)

Query:     4 GTRQGALSPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEH 63
             GT    ++PCAACKL+RRRCA++C F+PYF   EP KFA+VHKVFGASNV+KML E+ E 
Sbjct:    44 GTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGES 103

Query:    64 QRSEAVSSMVYEANARFHDPVRGCVGAI 91
             QR +A +S+VYEAN R  DP+ GC+GAI
Sbjct:   104 QRGDAANSLVYEANLRLRDPIYGCMGAI 131

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2161982 LOB "LATERAL ORGAN BOUNDARIES" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 55/81 (67%), Positives = 65/81 (80%)

Query:    11 SPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEHQRSEAVS 70
             SPCAACK +RR+C   C+FAPYFP +EP KFA+VHK+FGASNV K+L EL  HQR +AV+
Sbjct:    10 SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query:    71 SMVYEANARFHDPVRGCVGAI 91
             S+ YEA AR  DPV GCVGAI
Sbjct:    70 SLAYEAEARVRDPVYGCVGAI 90

GO:0005634 "nucleus" evidence=ISM

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IMP

TAIR|locus:2034163 AS2 "ASYMMETRIC LEAVES 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 55/81 (67%), Positives = 65/81 (80%)

Query:    11 SPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEHQRSEAVS 70
             SPCAACK +RR+C  +CVFAPYFP D+PQKFA+VHKVFGASNV K+L EL   QR +AV+
Sbjct:     8 SPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDAVN 67

Query:    71 SMVYEANARFHDPVRGCVGAI 91
             S+ YEA+ R  DPV GCVG I
Sbjct:    68 SLAYEADMRLRDPVYGCVGVI 88

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009799 "specification of symmetry" evidence=IMP

GO:0009954 "proximal/distal pattern formation" evidence=IGI

GO:0048441 "petal development" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0005654 "nucleoplasm" evidence=IDA

GO:0009943 "adaxial/abaxial axis specification" evidence=IMP

TAIR|locus:2026611 LBD1 "LOB domain-containing protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 56/82 (68%), Positives = 65/82 (79%)

Query:    10 LSPCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEHQRSEAV 69
             LSPCAACK++RRRCA+ CV APYFP  +P KF   H+VFGASN+ K LQEL E QR++AV
Sbjct:    31 LSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAV 90

Query:    70 SSMVYEANARFHDPVRGCVGAI 91
             +SMVYEA AR  DPV GC GAI
Sbjct:    91 NSMVYEAEARIRDPVYGCAGAI 112

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SHE9	LBD4_ARATH	No assigned EC number	0.8119	0.9069	0.6802	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	129
pfam03195	101	pfam03195, DUF260, Protein of unknown function DUF	7e-53

>gnl|CDD|190559 pfam03195, DUF260, Protein of unknown function DUF260

 Score =  161 bits (410), Expect = 7e-53
 Identities = 63/100 (63%), Positives = 81/100 (81%)

Query: 12  PCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEHQRSEAVSS 71
           PCAACK +RR+C  DCV APYFPA++P +FA+VHK+FGASNV K+L+ L   QR +A+ S
Sbjct: 1   PCAACKHLRRKCPPDCVLAPYFPAEQPARFANVHKLFGASNVTKLLKALPPEQRDDAMRS 60

Query: 72  MVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAE 111
           ++YEA+AR  DPV GCVG I SLQQQ+E LQA+LAL +A+
Sbjct: 61  LLYEADARARDPVYGCVGVIWSLQQQLEQLQAELALVKAQ 100

Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
PF03195	101	DUF260: Protein of unknown function DUF260; InterP	100.0
COG3416	233	Uncharacterized protein conserved in bacteria [Fun	91.88
PF09849	247	DUF2076: Uncharacterized protein conserved in bact	85.47
PF09006	46	Surfac_D-trimer: Lung surfactant protein D coiled-	83.63
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	82.42
PF05308	253	Mito_fiss_reg: Mitochondrial fission regulator; In	82.31
PF13334	95	DUF4094: Domain of unknown function (DUF4094)	81.44

>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function

Probab=100.00  E-value=2.4e-54  Score=311.12  Aligned_cols=101  Identities=68%  Similarity=1.157  Sum_probs=99.7

Q ss_pred             CChhhHHhhhCCCCCCccCCCCCCCChHHHHHHHHHhhhchHHHHHhhcCchhhHHHHHHHHHHHhhcccCCCCcchHHH
Q 041989           12 PCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEHQRSEAVSSMVYEANARFHDPVRGCVGAI   91 (129)
Q Consensus        12 ~CaaCk~lRR~C~~~C~laPyFp~~~~~~F~~vhkvFG~snv~k~L~~l~~~~R~~a~~Sl~YEA~aR~rDPVyGc~G~I   91 (129)
                      +|||||||||+|+++|+||||||++++++|++||||||++||+|||+++|+++|+++|+||+|||++|.+||||||+|+|
T Consensus         1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i   80 (101)
T PF03195_consen    1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII   80 (101)
T ss_pred             CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 041989           92 SSLQQQVESLQAQLALAQAEV  112 (129)
Q Consensus        92 ~~Lq~qi~~lq~eL~~~~~el  112 (129)
                      +.|+|||+++++||+.+++||
T Consensus        81 ~~L~~ql~~~~~el~~~~~~l  101 (101)
T PF03195_consen   81 SQLQQQLQQLQAELALVRAQL  101 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHccC
Confidence            999999999999999999886

The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].

>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.88  E-value=0.71  Score=38.02  Aligned_cols=67  Identities=12%  Similarity=0.137  Sum_probs=58.2

Q ss_pred             HHHHHhhcCchhhHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041989           53 VNKMLQELQEHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMRMRL  119 (129)
Q Consensus        53 v~k~L~~l~~~~R~~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~~r~~~  119 (129)
                      +..-|+......|+..+..||-||-++.-|--|=-+-.|..+++-|..++.||+.++.+|+.+..-+
T Consensus        12 lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~~~   78 (233)
T COG3416          12 LFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQAGE   78 (233)
T ss_pred             HHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3344566667789999999999999999999999999999999999999999999999999766543

>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins

Probab=85.47  E-value=3.7  Score=34.00  Aligned_cols=62  Identities=18%  Similarity=0.204  Sum_probs=55.9

Q ss_pred             HHHHHhhcCchhhHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989           53 VNKMLQELQEHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQ  114 (129)
Q Consensus        53 v~k~L~~l~~~~R~~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~  114 (129)
                      +..-|+.+....|+.-++.||-|+-.|.-|-+|=-+=.|..++.=|+.++++|+.++.+|..
T Consensus        12 lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q   73 (247)
T PF09849_consen   12 LFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ   73 (247)
T ss_pred             HHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33456777777899999999999999999999999999999999999999999999999975

>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46

Probab=83.63  E-value=3  Score=26.59  Aligned_cols=32  Identities=41%  Similarity=0.485  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 041989           91 ISSLQQQVESLQAQLALAQAEVEQMRMRLISP  122 (129)
Q Consensus        91 I~~Lq~qi~~lq~eL~~~~~el~~~r~~~~~~  122 (129)
                      |..|.+|+..|+.+|..+|+-+..++-....|
T Consensus         1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa~lFp   32 (46)
T PF09006_consen    1 INALRQQVEALQGQVQRLQAAFSQYKKAELFP   32 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            56899999999999999999998877554443

It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=82.42  E-value=0.88  Score=34.46  Aligned_cols=81  Identities=21%  Similarity=0.287  Sum_probs=48.4

Q ss_pred             CChHHHHHHHHHhhhchHHHHHhhcCchhh---HHHHHHHHHHHhhcccCCCCcc-----hHHHHHHHHHHHHHHHHHHH
Q 041989           36 DEPQKFASVHKVFGASNVNKMLQELQEHQR---SEAVSSMVYEANARFHDPVRGC-----VGAISSLQQQVESLQAQLAL  107 (129)
Q Consensus        36 ~~~~~F~~vhkvFG~snv~k~L~~l~~~~R---~~a~~Sl~YEA~aR~rDPVyGc-----~G~I~~Lq~qi~~lq~eL~~  107 (129)
                      .-..-|.|+|.-||-..|.|.|..|-.+.+   ...=.+.||=++--.-+-+..-     =.-|..|+.++..++.++..
T Consensus        18 s~~di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~   97 (169)
T PF07106_consen   18 SAQDIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKS   97 (169)
T ss_pred             cHHHHHHHHHhhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445689999999999999999999865433   1222344565554333311111     12355566666666666666


Q ss_pred             HHHHHHHHh
Q 041989          108 AQAEVEQMR  116 (129)
Q Consensus       108 ~~~el~~~r  116 (129)
                      ++++|..++
T Consensus        98 l~~eL~~L~  106 (169)
T PF07106_consen   98 LEAELASLS  106 (169)
T ss_pred             HHHHHHHHh
Confidence            666665444

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function

Probab=82.31  E-value=2.2  Score=35.39  Aligned_cols=24  Identities=17%  Similarity=0.351  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc
Q 041989           96 QQVESLQAQLALAQAEVEQMRMRL  119 (129)
Q Consensus        96 ~qi~~lq~eL~~~~~el~~~r~~~  119 (129)
                      ++|..||.||+.+|+|||.+-..|
T Consensus       122 qKIsALEdELs~LRaQIA~IV~~q  145 (253)
T PF05308_consen  122 QKISALEDELSRLRAQIAKIVAAQ  145 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc
Confidence            677888899999999999776655

>PF13334 DUF4094: Domain of unknown function (DUF4094)

Probab=81.44  E-value=1.5  Score=31.31  Aligned_cols=24  Identities=46%  Similarity=0.552  Sum_probs=18.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH
Q 041989           88 VGAISSLQQQVESLQAQLALAQAE  111 (129)
Q Consensus        88 ~G~I~~Lq~qi~~lq~eL~~~~~e  111 (129)
                      .-.|..|...|..||+||+.+|++
T Consensus        72 h~aIq~LdKtIS~LEMELAaARa~   95 (95)
T PF13334_consen   72 HEAIQSLDKTISSLEMELAAARAE   95 (95)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            345778888888888888888753

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	129
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	91.42
2er8_A	72	Regulatory protein Leu3; Zn(2)Cys(6) binuclear clu	82.17

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=91.42  E-value=0.33  Score=27.67  Aligned_cols=28  Identities=25%  Similarity=0.568  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989           89 GAISSLQQQVESLQAQLALAQAEVEQMR  116 (129)
Q Consensus        89 G~I~~Lq~qi~~lq~eL~~~~~el~~~r  116 (129)
                      |.|-.|+++|..|+.|++.++-||+..+
T Consensus         2 geiaalkqeiaalkkeiaalkfeiaalk   29 (33)
T 4dzn_A            2 GEIAALKQEIAALKKEIAALKFEIAALK   29 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999998664

>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A

Probab=82.17  E-value=2.9  Score=25.98  Aligned_cols=21  Identities=10%  Similarity=0.180  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 041989           89 GAISSLQQQVESLQAQLALAQ  109 (129)
Q Consensus        89 G~I~~Lq~qi~~lq~eL~~~~  109 (129)
                      +.|..|+.+|..|+..|..+.
T Consensus        49 ~~~~~Le~ri~~Le~~l~~l~   69 (72)
T 2er8_A           49 ARNEAIEKRFKELTRTLTNLT   69 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            566777777777777776554

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00