Citrus Sinensis ID: 041993

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-
MCYFHFLISILLLSIFNTSSLAAPPSYNVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLNSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPIIIDQNYCPDNIGCPGQVSGVKISDVTYQDVHGTSATEVAVNFDCSSKYPCSRIRLEDVKLTYKNQPAAASCSHADGSASGLVQPKGCL
ccHHHHHHHHHHHHHHHccccccccEEEEcccccccccccccHHHHHHHHHHHHcccccEEEEEcccEEEEEEEEEcccccccEEEEEEEEEEEcccccccccccccEEEEEEEEcEEEEcEEEEcccccccccccccccccccccEEEEEEEccEEEEcEEEEccccEEEEEEEEEEEEEEEEEEEcccccccccEEEccccccEEEEEEEEEEcccEEEEccccEEEEEEEEEEcccccEEEEEEccccccccEEEEEEEEEEEEccccEEEEEEEcccccEEEEEEEEEEEEEEcccccEEEEEEEcccccccccccccEEEEcEEEEEEEEEEccccEEEEEccccccEEEEEEEEEEEEEccccccEEEEEEEEEccccccccccc
ccHHHHHHHHHHHHHHHccccccccEEEEEccccccccccccHHHHHHHHHHHHcccccEEEEEcccEEEEEEEEEEcccccccEEEEEEEEEEccccHHHccccccEEEEEEEcEEEEEcEEEcccccHHHcccccccccccccEEEEEEEcccEEEEEEEEEccccEEEEEEccEEEEEEEEEEEccccccccccEEEEccccEEEEEEEEcccccEEEEcccccEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEcccEEEEEEccccccccEEEEEEEEEEEEEcccccEEEEcccccccccccccccEEEEEEEEEEEEccccccccEEEEEcccccccccEEEEEEEEEEcccccEEEEccccccEcccccccccc
MCYFHFLISILLLSIfntsslaappsynvvsfgakpdgrtdsTKAFLSAWANacgspraatiyvppgrfflrnvafqgpcknnritiridgtlvapsdyrvignagnwLFFQHVdgvtlnsgildgqGTALWACknsgkncpsgatsmgfsncnniAINGLTSLNSQMYHVVFNGCNNVKLKGVKVlasgnspntdgihVQLSSDVTILNTristgddcvsigpgtsnlwienvacgpghgisigslgkdlneagvqNVTVKTVTFtgtqnglrikswgrpsngfarNILFRNAIMKnvqnpiiidqnycpdnigcpgqvsgvkisdvtyqdvhgtsaTEVAVnfdcsskypcsrirledvkltyknqpaaascshadgsasglvqpkgcl
MCYFHFLISILLLSIFNTSSLAAPPSYNVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLNSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNEAGVQNVTVKTvtftgtqnglrikswgrpsnGFARNILFRNAIMKNVQNPIIIDQNYCPDNIGCPGQVSGVKISDVTYQDVHGTSATevavnfdcsskypCSRIRLEDVKLTYKNQPaaascshadgsasglvqpkgcl
MCYfhflisilllsifntsslAAPPSYNVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLNSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPIIIDQNYCPDNIGCPGQVSGVKISDVTYQDVHGTSATEVAVNFDCSSKYPCSRIRLEDVKLTYKNQPAAASCSHADGSASGLVQPKGCL
*CYFHFLISILLLSIFNTSSLAAPPSYNVVSFGA*******STKAFLSAWANACGSPRAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLNSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPIIIDQNYCPDNIGCPGQVSGVKISDVTYQDVHGTSATEVAVNFDCSSKYPCSRIRLEDVKLTYK*************************
*CYFHFLISILLLSIFNTSSLAAPPSYNVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLNSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPIIIDQNYCPDNIGCPGQVSGVKISDVTYQDVHGTSATEVAVNFDCSSKYPCSRIRLEDVKLTYKNQPAAASCSHADGSASGLVQPKGCL
MCYFHFLISILLLSIFNTSSLAAPPSYNVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLNSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPIIIDQNYCPDNIGCPGQVSGVKISDVTYQDVHGTSATEVAVNFDCSSKYPCSRIRLEDVKLTYKN************************
*CYFHFLISILLLSIFNTSSLAAPPSYNVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLNSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPIIIDQNYCPDNIGCPGQVSGVKISDVTYQDVHGTSATEVAVNFDCSSKYPCSRIRLEDVKLTYKNQPAAASCSHADGSASGLVQPKGCL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MCYFHFLISILLLSIFNTSSLAAPPSYNVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLNSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPIIIDQNYCPDNIGCPGQVSGVKISDVTYQDVHGTSATEVAVNFDCSSKYPCSRIRLEDVKLTYKNQPAAASCSHADGSASGLVQPKGCL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query391 2.2.26 [Sep-21-2011]
P48979393 Polygalacturonase OS=Prun N/A no 0.984 0.979 0.733 1e-170
O22818405 Probable polygalacturonas no no 0.951 0.918 0.575 1e-118
Q6H9K0377 Exopolygalacturonase (Fra N/A no 0.915 0.949 0.426 2e-78
Q9SFB7439 Polygalacturonase QRT2 OS no no 0.923 0.822 0.422 5e-76
P35339410 Exopolygalacturonase OS=Z N/A no 0.992 0.946 0.397 1e-75
O23147431 Polygalacturonase ADPG1 O no no 0.948 0.860 0.404 2e-75
P35336467 Polygalacturonase OS=Acti N/A no 0.925 0.775 0.432 1e-74
Q94AJ5444 Probable polygalacturonas no no 0.925 0.815 0.415 3e-74
P26216410 Exopolygalacturonase OS=Z N/A no 0.930 0.887 0.410 4e-74
Q05967396 Polygalacturonase OS=Nico N/A no 0.966 0.954 0.406 6e-74
>sp|P48979|PGLR_PRUPE Polygalacturonase OS=Prunus persica PE=2 SV=1 Back     alignment and function desciption
 Score =  598 bits (1543), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 284/387 (73%), Positives = 331/387 (85%), Gaps = 2/387 (0%)

Query: 6   FLISILLLSIFNTSSLAAPPSYNVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVP 65
           F +S++ + + N S++A+P +YNV S GAK DG+TDSTKAFLSAWA AC S     IYVP
Sbjct: 8   FSLSLIFVFMIN-SAIASPLTYNVASLGAKADGKTDSTKAFLSAWAKACASMNPGVIYVP 66

Query: 66  PGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLNSGILD 125
            G FFLR+V F GPCKNN IT RI GTLVAPSDYRVIGNA NW+FF HV+GVT++ GILD
Sbjct: 67  AGTFFLRDVVFSGPCKNNAITFRIAGTLVAPSDYRVIGNAANWIFFHHVNGVTISGGILD 126

Query: 126 GQGTALWACKN-SGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGV 184
           GQGTALWACK   G++CPSGAT++GFS+ NNI ++GL SLNSQM+H+V N   NV+++GV
Sbjct: 127 GQGTALWACKACHGESCPSGATTLGFSDSNNIVVSGLASLNSQMFHIVINDFQNVQMQGV 186

Query: 185 KVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISI 244
           +V  SGNSPNTDGIHVQ+SS VTILN++I+TGDDCVSIGPGTSNLWIE VACGPGHGISI
Sbjct: 187 RVSRSGNSPNTDGIHVQMSSGVTILNSKIATGDDCVSIGPGTSNLWIEGVACGPGHGISI 246

Query: 245 GSLGKDLNEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPII 304
           GSLGK+  EAGVQNVTVKTVTF+GTQNGLRIKSWGRPS GFARNILF++A M NV+NPI+
Sbjct: 247 GSLGKEQEEAGVQNVTVKTVTFSGTQNGLRIKSWGRPSTGFARNILFQHATMVNVENPIV 306

Query: 305 IDQNYCPDNIGCPGQVSGVKISDVTYQDVHGTSATEVAVNFDCSSKYPCSRIRLEDVKLT 364
           IDQ+YCPDN GCPGQVSGV+ISDVTY+D+HGTSATEVAV FDCS K+PC  I+LEDVKLT
Sbjct: 307 IDQHYCPDNKGCPGQVSGVQISDVTYEDIHGTSATEVAVKFDCSPKHPCREIKLEDVKLT 366

Query: 365 YKNQPAAASCSHADGSASGLVQPKGCL 391
           YKNQ A +SCSHADG+  G+VQP  CL
Sbjct: 367 YKNQAAESSCSHADGTTEGVVQPTSCL 393
Acts in concert with the pectinesterase, in the ripening process. Is involved in cell wall metabolism, specifically in polyuronide degradation.
Prunus persica (taxid: 3760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|O22818|PGLR6_ARATH Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1 Back     alignment and function description
>sp|Q6H9K0|PGLR2_PLAAC Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2 Back     alignment and function description
>sp|P35339|PGLR3_MAIZE Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 Back     alignment and function description
>sp|Q94AJ5|PGLR5_ARATH Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1 Back     alignment and function description
>sp|P26216|PGLR1_MAIZE Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1 Back     alignment and function description
>sp|Q05967|PGLR_TOBAC Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query391
255576396393 Polygalacturonase precursor, putative [R 0.984 0.979 0.768 1e-175
157313320393 endopolygalacturonase [Prunus persica] 0.984 0.979 0.746 1e-172
3747093393 endopolygalacturonase [Prunus persica] g 0.984 0.979 0.746 1e-172
85680276393 endo-polygalacturonase [Prunus persica] 0.984 0.979 0.744 1e-171
87242603393 polygalacturonase [Prunus domestica subs 0.984 0.979 0.744 1e-171
85680278393 endo-polygalacturonase [Prunus persica] 0.984 0.979 0.744 1e-171
315143143393 endopolygalacturonase [Prunus armeniaca] 0.984 0.979 0.741 1e-171
380469906393 endopolygalacturonase [Prunus armeniaca] 0.984 0.979 0.736 1e-169
1346705393 RecName: Full=Polygalacturonase; Short=P 0.984 0.979 0.733 1e-168
51507375398 polygalacturonase [Pyrus communis] 0.984 0.967 0.727 1e-167
>gi|255576396|ref|XP_002529090.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223531441|gb|EEF33274.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 298/388 (76%), Positives = 337/388 (86%), Gaps = 3/388 (0%)

Query: 4   FHFLISILLLSIFNTSSLAAPPSYNVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIY 63
           F FL  ++LL    TSSLA    YNV+S+GAKPDGRTDSTKAFL+AW  ACGS +  TIY
Sbjct: 9   FSFLALLILLF---TSSLATAAQYNVLSYGAKPDGRTDSTKAFLAAWTQACGSTKPPTIY 65

Query: 64  VPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLNSGI 123
           VP G+FFL++++F GPCKNN I  RIDGTLVAPSDY+VIGNAG WL+FQHV+GVT++ GI
Sbjct: 66  VPSGKFFLKDLSFGGPCKNNAILFRIDGTLVAPSDYKVIGNAGYWLYFQHVNGVTISGGI 125

Query: 124 LDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKG 183
           LDGQG+ LWACK SGKNCPSGATS+GFSN  NIAINGLTS NSQM+H+V NGC NVK++G
Sbjct: 126 LDGQGSGLWACKASGKNCPSGATSLGFSNSKNIAINGLTSQNSQMFHIVINGCQNVKVQG 185

Query: 184 VKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGIS 243
           V V ASG+SPNTDGIHVQ S  VTILN++I TGDDC+SIGPG +NLWIEN+ACGPGHGIS
Sbjct: 186 VTVSASGDSPNTDGIHVQQSGGVTILNSKIRTGDDCISIGPGATNLWIENIACGPGHGIS 245

Query: 244 IGSLGKDLNEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPI 303
           IGSLGKDL EAGVQNVTVKTVTFTGTQNG+RIKSWGRPS+GFARNILF++AIM NVQNPI
Sbjct: 246 IGSLGKDLQEAGVQNVTVKTVTFTGTQNGVRIKSWGRPSSGFARNILFQHAIMTNVQNPI 305

Query: 304 IIDQNYCPDNIGCPGQVSGVKISDVTYQDVHGTSATEVAVNFDCSSKYPCSRIRLEDVKL 363
           +IDQNYCPDN  CPGQ SGVKIS VTYQD+HGTSATEVAV FDCS K PC+ I+LEDVKL
Sbjct: 306 VIDQNYCPDNKNCPGQESGVKISGVTYQDIHGTSATEVAVKFDCSKKEPCTGIKLEDVKL 365

Query: 364 TYKNQPAAASCSHADGSASGLVQPKGCL 391
           TYKNQPA ASC++ADG+ASG VQP  CL
Sbjct: 366 TYKNQPADASCNNADGTASGFVQPSSCL 393

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|157313320|gb|ABV32553.1| endopolygalacturonase [Prunus persica] Back     alignment and taxonomy information
>gi|3747093|gb|AAC64184.1| endopolygalacturonase [Prunus persica] gi|337730173|gb|AEI70577.1| endo-polygalacturonase [Prunus persica] gi|337730175|gb|AEI70578.1| endo-polygalacturonase [Prunus persica] gi|337730177|gb|AEI70579.1| endo-polygalacturonase [Prunus persica] gi|337730179|gb|AEI70580.1| endo-polygalacturonase [Prunus persica] Back     alignment and taxonomy information
>gi|85680276|gb|ABC72324.1| endo-polygalacturonase [Prunus persica] gi|110293963|gb|ABG66443.1| endo-polygalacturonase [Prunus persica] Back     alignment and taxonomy information
>gi|87242603|gb|ABD33834.1| polygalacturonase [Prunus domestica subsp. insititia] Back     alignment and taxonomy information
>gi|85680278|gb|ABC72325.1| endo-polygalacturonase [Prunus persica] gi|110293961|gb|ABG66442.1| endo-polygalactoronase [Prunus persica] gi|337730171|gb|AEI70576.1| endo-polygalacturonase [Prunus persica] Back     alignment and taxonomy information
>gi|315143143|gb|ADT82706.1| endopolygalacturonase [Prunus armeniaca] Back     alignment and taxonomy information
>gi|380469906|gb|AFD62267.1| endopolygalacturonase [Prunus armeniaca] Back     alignment and taxonomy information
>gi|1346705|sp|P48979.1|PGLR_PRUPE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor gi|436420|emb|CAA54150.1| endopolygalacturonase [Prunus persica] Back     alignment and taxonomy information
>gi|51507375|emb|CAH18935.1| polygalacturonase [Pyrus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query391
TAIR|locus:2043924384 AT2G43870 [Arabidopsis thalian 0.930 0.947 0.711 6.4e-147
TAIR|locus:2080422388 AT3G59850 [Arabidopsis thalian 0.936 0.943 0.683 5.9e-144
TAIR|locus:2051764392 AT2G43890 [Arabidopsis thalian 0.941 0.938 0.574 1.1e-119
TAIR|locus:2031953394 AT1G05650 [Arabidopsis thalian 0.930 0.923 0.549 5e-115
TAIR|locus:2031963394 AT1G05660 [Arabidopsis thalian 0.930 0.923 0.549 1.7e-114
TAIR|locus:2043974405 AT2G43860 [Arabidopsis thalian 0.938 0.906 0.570 1.1e-112
TAIR|locus:2043894394 AT2G43880 [Arabidopsis thalian 0.941 0.934 0.533 5.9e-112
TAIR|locus:2034131397 AT1G65570 [Arabidopsis thalian 0.943 0.929 0.525 4.8e-110
UNIPROTKB|Q6H9K0377 plaa2 "Exopolygalacturonase" [ 0.913 0.946 0.430 3.3e-79
TAIR|locus:2063114404 AT2G40310 [Arabidopsis thalian 0.933 0.903 0.437 1.4e-78
TAIR|locus:2043924 AT2G43870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1435 (510.2 bits), Expect = 6.4e-147, P = 6.4e-147
 Identities = 261/367 (71%), Positives = 308/367 (83%)

Query:    26 SYNVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPGRFFLRNVAFQGP-CKNNR 84
             SYNV+SFGAKPDG+TD+TKAF++ W  AC S R  TI VP GRF LR+V F G  CK   
Sbjct:    20 SYNVLSFGAKPDGKTDATKAFMAVWQTACASSRPVTIVVPKGRFLLRSVTFDGSKCKPKP 79

Query:    85 ITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLNSGILDGQGTALWACKNSGKNCPSG 144
             +T RIDGTLVAP+DYRVIGN   W+FFQH+DG+T+  G+LD +G +LW CK SGKNCPSG
Sbjct:    80 VTFRIDGTLVAPADYRVIGNEDYWIFFQHLDGITVYGGVLDARGASLWDCKKSGKNCPSG 139

Query:   145 ATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSS 204
             AT++GF + +N+ ++GLTSLNSQM+HVV NGCNNVKL+GVKVLA+GNSPNTDGIHVQ SS
Sbjct:   140 ATTIGFQSSSNVVVSGLTSLNSQMFHVVINGCNNVKLQGVKVLAAGNSPNTDGIHVQSSS 199

Query:   205 DVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNEAGVQNVTVKTV 264
              V+I NT+ISTGDDCVSIGPGT+ LWIENVACGPGHGISIGSLGKD  E+GVQNVTVKTV
Sbjct:   200 SVSIFNTKISTGDDCVSIGPGTNGLWIENVACGPGHGISIGSLGKDSVESGVQNVTVKTV 259

Query:   265 TFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPIIIDQNYCPDNIGCPGQVSGVK 324
             TFTGT NG+RIKSW RPS+GFA+NI F++ +M NV+NPIIIDQNYCPD+  CP QVSG+K
Sbjct:   260 TFTGTDNGVRIKSWARPSSGFAKNIRFQHCVMNNVENPIIIDQNYCPDH-DCPRQVSGIK 318

Query:   325 ISDVTYQDVHGTSATEVAVNFDCSSKYPCSRIRLEDVKLTYKNQPAAASCSHADGSASGL 384
             ISDV + D+HGTSATEV V  DCSSK PC+ IRLEDVKLTY+N+PAA++C+HA G  +G 
Sbjct:   319 ISDVLFVDIHGTSATEVGVKLDCSSKKPCTGIRLEDVKLTYQNKPAASACTHAGGIEAGF 378

Query:   385 VQPKGCL 391
              QP  CL
Sbjct:   379 FQPN-CL 384
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2080422 AT3G59850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051764 AT2G43890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031953 AT1G05650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031963 AT1G05660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043974 AT2G43860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043894 AT2G43880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034131 AT1G65570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6H9K0 plaa2 "Exopolygalacturonase" [Platanus x acerifolia (taxid:140101)] Back     alignment and assigned GO terms
TAIR|locus:2063114 AT2G40310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P48979PGLR_PRUPE3, ., 2, ., 1, ., 1, 50.73380.98460.9796N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.150.979
3rd Layer3.2.10.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query391
PLN02155394 PLN02155, PLN02155, polygalacturonase 1e-150
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 1e-112
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 1e-103
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 7e-95
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 1e-91
PLN03010409 PLN03010, PLN03010, polygalacturonase 7e-88
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 1e-84
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 9e-22
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 3e-06
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information 
 Score =  429 bits (1105), Expect = e-150
 Identities = 207/383 (54%), Positives = 272/383 (71%), Gaps = 2/383 (0%)

Query: 10  ILLLSIFNTSSLAAPPSYNVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPGRF 69
           +  L  F   S +A   +NVVSFGAKPDG TDST AFL AW  ACGS  +AT+ VP G F
Sbjct: 11  LFTLLTFIDVSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTF 70

Query: 70  FLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLNSGILDGQGT 129
            L+ + F GPCK+ +IT ++ GT+VAP DYR  GN+G W+ F  V+  +L  G  D +  
Sbjct: 71  LLKVITFGGPCKS-KITFQVAGTVVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDARAN 129

Query: 130 ALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLAS 189
             W+C+ SG+NCP G  S+ F++  ++ I+G+ S+NSQ+ H+  NGC NV ++ VK++A 
Sbjct: 130 GFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAP 189

Query: 190 GNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGK 249
           GNSPNTDG HVQ S+ VT   + + TGDDCV+IGPGT N  I  +ACGPGHG+SIGSL K
Sbjct: 190 GNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAK 249

Query: 250 DLNEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPIIIDQNY 309
           +LNE GV+NVTV +  FTG+QNG+RIKSW RPS GF RN+ F++ +MKNV+NPIIIDQNY
Sbjct: 250 ELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNY 309

Query: 310 CPDNIGCPGQVSGVKISDVTYQDVHGTSATEVAVNFDCSSKYPCSRIRLEDVKLTY-KNQ 368
           CP + GCP + SGVKIS VTY+++ GTSAT+ A+   CS   PC+ I L+D+KLTY K  
Sbjct: 310 CPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGT 369

Query: 369 PAAASCSHADGSASGLVQPKGCL 391
           PA + C +A G + G++QP  CL
Sbjct: 370 PATSFCFNAVGKSLGVIQPTSCL 392

Length = 394
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 391
PLN02155394 polygalacturonase 100.0
PLN02793443 Probable polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN03010409 polygalacturonase 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.94
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.88
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.84
PLN02793443 Probable polygalacturonase 99.84
PLN02155394 polygalacturonase 99.83
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.83
PLN02218431 polygalacturonase ADPG 99.83
PLN03010409 polygalacturonase 99.82
PLN03003456 Probable polygalacturonase At3g15720 99.82
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.8
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.75
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.34
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 99.22
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.1
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 99.04
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.81
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 98.76
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.73
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.67
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.65
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.6
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.5
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.46
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.36
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.35
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.34
smart00656190 Amb_all Amb_all domain. 98.29
smart00656190 Amb_all Amb_all domain. 98.12
PLN02497331 probable pectinesterase 98.09
PLN02176340 putative pectinesterase 98.06
PLN02480343 Probable pectinesterase 98.03
PLN02773317 pectinesterase 98.02
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.98
PLN02682369 pectinesterase family protein 97.96
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.88
PLN02634359 probable pectinesterase 97.88
PLN02170529 probable pectinesterase/pectinesterase inhibitor 97.83
PRK10531422 acyl-CoA thioesterase; Provisional 97.83
PLN02665366 pectinesterase family protein 97.8
PLN02671359 pectinesterase 97.7
PLN02916502 pectinesterase family protein 97.66
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.66
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 97.64
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 97.59
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 97.58
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 97.57
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.55
PLN02468565 putative pectinesterase/pectinesterase inhibitor 97.54
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.54
PLN02304379 probable pectinesterase 97.5
PLN02484587 probable pectinesterase/pectinesterase inhibitor 97.45
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 97.45
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 97.41
PLN02488509 probable pectinesterase/pectinesterase inhibitor 97.37
PLN02197588 pectinesterase 97.37
PLN02416541 probable pectinesterase/pectinesterase inhibitor 97.37
PLN02506537 putative pectinesterase/pectinesterase inhibitor 97.36
PLN02432293 putative pectinesterase 97.31
PLN02314586 pectinesterase 97.3
PLN02217670 probable pectinesterase/pectinesterase inhibitor 97.28
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 97.26
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.23
PLN02313587 Pectinesterase/pectinesterase inhibitor 97.2
PLN02301548 pectinesterase/pectinesterase inhibitor 97.2
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 96.78
PF1221867 End_N_terminal: N terminal extension of bacterioph 96.64
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.29
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 95.63
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 95.18
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 94.63
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 93.85
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 93.63
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 92.5
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 91.79
PF09251 549 PhageP22-tail: Salmonella phage P22 tail-spike; In 91.2
PLN02682369 pectinesterase family protein 90.87
PLN02665366 pectinesterase family protein 89.34
PLN02480343 Probable pectinesterase 89.13
PLN02468565 putative pectinesterase/pectinesterase inhibitor 87.84
PLN02170529 probable pectinesterase/pectinesterase inhibitor 87.79
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 86.91
PRK10531422 acyl-CoA thioesterase; Provisional 86.44
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 86.39
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 85.49
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 85.21
PLN02301548 pectinesterase/pectinesterase inhibitor 85.2
PLN02201520 probable pectinesterase/pectinesterase inhibitor 85.17
PLN02488509 probable pectinesterase/pectinesterase inhibitor 85.16
PLN02416541 probable pectinesterase/pectinesterase inhibitor 84.93
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 84.72
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 84.63
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 84.63
PLN02432293 putative pectinesterase 84.02
PLN02314586 pectinesterase 83.93
PLN02304379 probable pectinesterase 83.77
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 83.6
PLN02671359 pectinesterase 83.09
PLN02484587 probable pectinesterase/pectinesterase inhibitor 83.02
PLN02197588 pectinesterase 82.39
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 82.07
PLN02176340 putative pectinesterase 81.97
PLN02497331 probable pectinesterase 81.55
PLN02773317 pectinesterase 80.17
>PLN02155 polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=6.6e-77  Score=576.70  Aligned_cols=378  Identities=54%  Similarity=1.031  Sum_probs=344.9

Q ss_pred             HHHHHhccCCCCCeEEeecCCccCCCCcccHHHHHHHHHHHcCCCCCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccE
Q 041993           13 LSIFNTSSLAAPPSYNVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGT   92 (391)
Q Consensus        13 ~~~~~~~~~~~~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~   92 (391)
                      |+.+...+..+++++||+||||++||.+|+|+|||+||++||++.+|++|+||+|+|+++++.|.++||| +++|+++|+
T Consensus        14 ~~~~~~~~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gpcks-nv~l~l~G~   92 (394)
T PLN02155         14 LLTFIDVSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCKS-KITFQVAGT   92 (394)
T ss_pred             HHHHhhccccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEcccCCC-CceEEEeeE
Confidence            3444556677889999999999999999999999999977799889999999999999999999999999 999999999


Q ss_pred             EEeccCccccCCCCceEEEEeeeeeEEeceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCceeEE
Q 041993           93 LVAPSDYRVIGNAGNWLFFQHVDGVTLNSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVV  172 (391)
Q Consensus        93 l~~~~~~~~~~~~~~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~  172 (391)
                      |.++.++..|.....|+.+.+++|+.|.||+|||+|+.||.....+.....+|+++.|.+|+|++|++++++|+|.|+++
T Consensus        93 l~~~~d~~~~~~~~~wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~i~  172 (394)
T PLN02155         93 VVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMT  172 (394)
T ss_pred             EECccccccccccceeEEEECcCCCEEEccEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCCeEEE
Confidence            99988887776556689999999999999999999999998765444455678899999999999999999999999999


Q ss_pred             EeceeeEEEEeEEEEcCCCCCCCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCC
Q 041993          173 FNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLN  252 (391)
Q Consensus       173 ~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~  252 (391)
                      +..|+|++|++++|.++.+++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||.|..+||++|||+|++..
T Consensus       173 ~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~  252 (394)
T PLN02155        173 LNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELN  252 (394)
T ss_pred             EECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCC
Confidence            99999999999999999888999999999999999999999999999999999999999999999999999999987765


Q ss_pred             CCcEEEEEEEeeEEeCCceEEEEEEecCCCCeeEEEEEEEEEEEecCCccEEEEeeeCCCCCCCCCCCcceEEEeEEEEe
Q 041993          253 EAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPIIIDQNYCPDNIGCPGQVSGVKISDVTYQD  332 (391)
Q Consensus       253 ~~~i~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~n  332 (391)
                      .++++||+|+||++.++.+|++||+|.+.++|.++||+|+|++|+++.+||.|++.|.+....++.+.+.+.|+||+|+|
T Consensus       253 ~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~n  332 (394)
T PLN02155        253 EDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKN  332 (394)
T ss_pred             CCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEe
Confidence            67899999999999999999999998654689999999999999999999999999976444455445667999999999


Q ss_pred             EEEeeCCcceEEEecCCCCceecEEEEeeEEEecC-CCccceeecccccCcceecCCCCC
Q 041993          333 VHGTSATEVAVNFDCSSKYPCSRIRLEDVKLTYKN-QPAAASCSHADGSASGLVQPKGCL  391 (391)
Q Consensus       333 i~~~~~~~~~~~i~~~~~~~~~~v~~~nv~v~~~~-~~~~~~c~~~~g~~~~~~~~~~~~  391 (391)
                      |+++.....++.+.|.++.||+||+|+||.+..++ .++...|.|++|...+.++|++|+
T Consensus       333 i~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~~p~~c~  392 (394)
T PLN02155        333 IQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSCL  392 (394)
T ss_pred             eEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccCCccccc
Confidence            99998866799999999999999999999999886 445899999999999998999995

>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query391
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 2e-19
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 8e-17
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 7e-14
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 2e-13
1nhc_A336 Structural Insights Into The Processivity Of Endopo 3e-13
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 2e-12
1k5c_A335 Endopolygalacturonase I From Stereum Purpureum At 0 4e-11
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 7e-10
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 1e-08
2uve_A608 Structure Of Yersinia Enterocolitica Family 28 Exop 7e-07
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure 
Iteration: 1

 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 128/278 (46%), Gaps = 54/278 (19%)
Query: 118 TLNSGI-----LDGQG--------TALWA------CKNSGKNCPSGATSMGFSNCNNIAI 158
           T NSGI     +DGQG         + W        K   +N P     +  +   N  +
Sbjct: 108 TTNSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPR---LIQINKSKNFTL 164
Query: 159 NGLTSLNSQMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDD 218
             ++ +NS  +HVVF+  +        +     + NTDGI    S ++TI  + I+TGDD
Sbjct: 165 YNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDD 224
Query: 219 CVSIG-----PGTSNLWIENVACGPGHGISIGSLGKDLNEAGVQNVTVKTVTFTGTQNGL 273
            V+I        T N+ I +   G GHG+SIGS        GV NVTV  +   GT NGL
Sbjct: 225 NVAIKAYKGRAETRNISILHNDFGTGHGMSIGS-----ETMGVYNVTVDDLKMNGTTNGL 279
Query: 274 RIKSWGRPSNGFARNILFRNAIMKNVQNPIIIDQNY-------CPDNIGCPGQVSGVKIS 326
           RIKS  + + G    + + N +MKNV  PI+ID  Y        PD             S
Sbjct: 280 RIKS-DKSAAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKEGSNVPD------------WS 326
Query: 327 DVTYQDVHGTSATEVAVNFDCSSKYPCSRIRLEDVKLT 364
           D+T++DV   +   V +N + ++K P   + +++VKLT
Sbjct: 327 DITFKDVTSETKGVVVLNGE-NAKKPI-EVTMKNVKLT 362
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase Length = 608 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query391
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 1e-128
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 1e-120
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 1e-111
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 1e-106
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 1e-104
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 1e-103
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 1e-100
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 2e-98
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 2e-96
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 1e-91
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 3e-36
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 3e-32
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 2e-29
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 2e-27
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 2e-15
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 3e-13
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 7e-13
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 8e-11
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 8e-06
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  374 bits (962), Expect = e-128
 Identities = 87/384 (22%), Positives = 160/384 (41%), Gaps = 36/384 (9%)

Query: 17  NTSSLAAPPSYNVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPGRFFL-RNVA 75
           + S+  A  + N++S+GA  D  TD   A  SAWA AC S     +Y+P G + L   V 
Sbjct: 11  SASTKGATKTCNILSYGAVADNSTDVGPAITSAWA-ACKSG--GLVYIPSGNYALNTWVT 67

Query: 76  FQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTL----NSGILDGQGTAL 131
             G        I++DG +           +GN +         L    + G + G G   
Sbjct: 68  LTGGSA---TAIQLDGIIYRTGT-----ASGNMIAVTDTTDFELFSSTSKGAVQGFGYVY 119

Query: 132 WACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLASGN 191
                       GA  +  ++  + +++ +  +++  +H   + C++ ++  + +   GN
Sbjct: 120 H------AEGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRG-GN 172

Query: 192 SPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDL 251
               DGI V   S++ + +  ++  D+CV++    +N+ +E++ C    G ++GSLG D 
Sbjct: 173 EGGLDGIDVW-GSNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGAD- 230

Query: 252 NEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPIIIDQNYCP 311
               V ++  + V    +     IKS G   +G   N+L  N I       + ID  +  
Sbjct: 231 --TDVTDIVYRNVYTWSSNQMYMIKSNG--GSGTVSNVLLENFIGHGNAYSLDIDGYWSS 286

Query: 312 DNIGCPGQVSGVKISDVTYQDVHGTS---ATEVAVNFDCSSKYPCSRIRLEDVKLTYKN- 367
                     GV+++++T ++  GT    AT   +   CS   PC+ + LED+ +  ++ 
Sbjct: 287 MTAVAG---DGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESG 343

Query: 368 QPAAASCSHADGSASGLVQPKGCL 391
                 C  A GS   L       
Sbjct: 344 SSELYLCRSAYGSGYCLKDSSSHT 367
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query391
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.97
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 99.97
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.93
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.9
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.89
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.87
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.87
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.86
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.86
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.85
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.84
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.82
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.81
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.76
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.75
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.62
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.47
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.45
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.42
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.39
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.35
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.3
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.3
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.19
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 98.72
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.67
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.65
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.62
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.6
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.57
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.49
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.47
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.46
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.42
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.4
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.38
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.32
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 98.28
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.23
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.23
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.18
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.15
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.09
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.06
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.02
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.93
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.84
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.84
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.83
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.69
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.64
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 97.49
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.47
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 97.13
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 96.72
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.41
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 95.97
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 95.7
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 95.43
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 95.36
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 95.15
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 94.98
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 92.29
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 92.2
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 91.71
2vfm_A 559 Bifunctional tail protein; P22 tailspike protein, 91.13
2v5i_A 559 Salmonella typhimurium DB7155 bacteriophage DET7 t 90.91
2xc1_A 666 Bifunctional tail protein; hydrolase, endoglycosid 89.08
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 81.9
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=1.6e-62  Score=487.11  Aligned_cols=330  Identities=24%  Similarity=0.399  Sum_probs=294.3

Q ss_pred             ccCCCCCeEEeecCCccCCCCcccHHHHHHHHHHHcCCCCCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccC
Q 041993           19 SSLAAPPSYNVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSD   98 (391)
Q Consensus        19 ~~~~~~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~   98 (391)
                      .+...+++++|++|||++||.+|||+|||+||++ |++.++++|+||+|+|+++++.|+    | +++|+++|+|+++++
T Consensus        20 ~p~~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~~-c~~~ggg~v~vP~G~yl~~~l~l~----s-~v~l~l~gtL~~s~d   93 (448)
T 3jur_A           20 EPQIPDREVNLLDFGARGDGRTDCSESFKRAIEE-LSKQGGGRLIVPEGVFLTGPIHLK----S-NIELHVKGTIKFIPD   93 (448)
T ss_dssp             CCCCCSCEEEGGGGTCCCEEEEECHHHHHHHHHH-HHHHTCEEEEECSSEEEESCEECC----T-TEEEEESSEEEECCC
T ss_pred             CCCCCCcEEEEEecccCCCCCeecHHHHHHHHHh-hhhcCCeEEEECCCcEEEeeeEeC----C-CcEEEEEEEEEecCC
Confidence            4456778999999999999999999999999965 666678999999999999999997    7 999999999999999


Q ss_pred             cccc-CC------------CCceEEEEeeeeeEEec-eeEeCCC--ccccccccC-------------------------
Q 041993           99 YRVI-GN------------AGNWLFFQHVDGVTLNS-GILDGQG--TALWACKNS-------------------------  137 (391)
Q Consensus        99 ~~~~-~~------------~~~~i~~~~~~ni~I~G-G~idg~g--~~~w~~~~~-------------------------  137 (391)
                      +..| +.            ..+||.+.+++||.|+| |+|||+|  +.||+....                         
T Consensus        94 ~~~y~p~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  173 (448)
T 3jur_A           94 PERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAER  173 (448)
T ss_dssp             GGGGCSCEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHHHHH
T ss_pred             HHHhCcccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhhhhhhhcc
Confidence            9888 32            13689999999999999 9999999  889974321                         


Q ss_pred             ---------CCCCCCCCeeEEEEeecceEEEeEEEecCCceeEEEeceeeEEEEeEEEEcCCCCCCCCceeeeccccEEE
Q 041993          138 ---------GKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTI  208 (391)
Q Consensus       138 ---------~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I  208 (391)
                               +.....||++|.+.+|+|++|+|++++|+|.|++++..|+|++|++++|.++  ++++||||+.+|+||+|
T Consensus       174 ~~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV~I  251 (448)
T 3jur_A          174 GTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLI  251 (448)
T ss_dssp             TCCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEEEE
T ss_pred             cCcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCEEE
Confidence                     0123478999999999999999999999999999999999999999999986  57999999999999999


Q ss_pred             EeeEEecCCceEEeCCC-----------ceeEEEEeeEE--cCCc-eEEEeecCCCCCCCcEEEEEEEeeEEeCCceEEE
Q 041993          209 LNTRISTGDDCVSIGPG-----------TSNLWIENVAC--GPGH-GISIGSLGKDLNEAGVQNVTVKTVTFTGTQNGLR  274 (391)
Q Consensus       209 ~n~~i~~~dD~i~i~~~-----------~~nv~i~n~~~--~~~~-gi~igs~g~~~~~~~i~nI~i~n~~~~~~~~gi~  274 (391)
                      +||+|.++||||+++++           ++||+|+||+|  ..+| |++|||++    .++++||+|+||++.++.+|++
T Consensus       252 ~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~----~~~v~nV~v~n~~~~~t~~Gir  327 (448)
T 3jur_A          252 EKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEM----SGGVRNVVARNNVYMNVERALR  327 (448)
T ss_dssp             ESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSC----TTCEEEEEEESCEEESCSEEEE
T ss_pred             EeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcc----cCcEEEEEEEEEEEecccceEE
Confidence            99999999999999997           89999999999  5566 89999983    5689999999999999999999


Q ss_pred             EEEecCCCCeeEEEEEEEEEEEecCCccE-EEEeeeCCCCCCCCCCCcceEEEeEEEEeEEEeeCCcceEEEecCCCCce
Q 041993          275 IKSWGRPSNGFARNILFRNAIMKNVQNPI-IIDQNYCPDNIGCPGQVSGVKISDVTYQDVHGTSATEVAVNFDCSSKYPC  353 (391)
Q Consensus       275 i~~~~~~~~g~i~nI~~~ni~~~~~~~~i-~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~~~~~~  353 (391)
                      ||++.+ ++|.++||+|+|++|+++.+++ .|++.|...   +  ....+.++||+|+||+++. ...++.+.|.++.||
T Consensus       328 IKt~~g-~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~---~--~~~~~~i~nI~~~NI~~t~-~~~~i~i~g~~~~p~  400 (448)
T 3jur_A          328 LKTNSR-RGGYMENIFFIDNVAVNVSEEVIRINLRYDNE---E--GEYLPVVRSVFVKNLKATG-GKYAVRIEGLENDYV  400 (448)
T ss_dssp             EECCTT-TCSEEEEEEEESCEEEEESSEEEEEESCGGGC---C--CSCCCEEEEEEEESCEEEE-CSEEEEEECBTTBCE
T ss_pred             EEEEcC-CCceEeeEEEEEEEEECCccccEEEEeeccCC---C--CCCCceEEEEEEEeEEEEe-cceEEEEEeCCCCCE
Confidence            999877 7799999999999999999988 999988753   1  1234589999999999998 456999999999999


Q ss_pred             ecEEEEeeEEEecC
Q 041993          354 SRIRLEDVKLTYKN  367 (391)
Q Consensus       354 ~~v~~~nv~v~~~~  367 (391)
                      +||+|+||+++..+
T Consensus       401 ~~I~~~nv~i~~~~  414 (448)
T 3jur_A          401 KDILISDTIIEGAK  414 (448)
T ss_dssp             EEEEEEEEEEESCS
T ss_pred             eeEEEEEEEEEccc
Confidence            99999999999644
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2vfm_A Bifunctional tail protein; P22 tailspike protein, salmonella bacteriophage P22, protein folding, protein stability; 1.50A {Enterobacteria phage P22} PDB: 2vfp_A 2vfo_A 2vfq_A 2vfn_A 1tsp_A 1qrb_A 1qq1_A 1qrc_A 1tyu_A* 1tyv_A 1tyw_A* 1tyx_A* 1qa2_A 1clw_A 1qa3_A 1qa1_A Back     alignment and structure
>2v5i_A Salmonella typhimurium DB7155 bacteriophage DET7 tailspike; O-antigen binding and hydrolysis, beta-helix, viral protein; 1.60A {Bacteriophage} Back     alignment and structure
>2xc1_A Bifunctional tail protein; hydrolase, endoglycosidase, salmonella phage P22; HET: PE4; 1.65A {Enterobacteria phage P22} PDB: 1lkt_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 391
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 1e-89
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 8e-84
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 6e-82
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-70
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 6e-65
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-64
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 6e-64
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 6e-55
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  274 bits (702), Expect = 1e-89
 Identities = 86/379 (22%), Positives = 158/379 (41%), Gaps = 28/379 (7%)

Query: 17  NTSSLAAPPSYNVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPGRFFLRN-VA 75
           + S+  A  + N++S+GA  D  TD   A  SAWA AC S     +Y+P G + L   V 
Sbjct: 11  SASTKGATKTCNILSYGAVADNSTDVGPAITSAWA-ACKSG--GLVYIPSGNYALNTWVT 67

Query: 76  FQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLNSGILDGQGTALWACK 135
             G        I++DG +           +GN +         L S     +G       
Sbjct: 68  LTGGSA---TAIQLDGIIYRTGT-----ASGNMIAVTDTTDFELFSST--SKGAVQGFGY 117

Query: 136 NSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLASGNSPNT 195
                   GA  +  ++  + +++ +  +++  +H   + C++ ++  + +   GN    
Sbjct: 118 VYHAEGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAI-RGGNEGGL 176

Query: 196 DGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNEAG 255
           DGI V   S++ + +  ++  D+CV++    +N+ +E++ C    G ++GSLG D     
Sbjct: 177 DGIDVW-GSNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGAD---TD 232

Query: 256 VQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPIIIDQNYCPDNIG 315
           V ++  + V    +     IKS G   +G   N+L  N I       + ID  +      
Sbjct: 233 VTDIVYRNVYTWSSNQMYMIKSNGG--SGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAV 290

Query: 316 CPGQVSGVKISDVTYQDVHGTS---ATEVAVNFDCSSKYPCSRIRLEDVKLTYKN-QPAA 371
                 GV+++++T ++  GT    AT   +   CS   PC+ + LED+ +  ++     
Sbjct: 291 AG---DGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSEL 347

Query: 372 ASCSHADGSASGLVQPKGC 390
             C  A GS   L      
Sbjct: 348 YLCRSAYGSGYCLKDSSSH 366
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query391
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.84
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.82
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.82
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.78
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.78
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.76
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.66
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.59
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.54
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.6
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.59
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.44
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.27
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.86
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.83
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.81
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.78
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.75
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.72
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.67
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.57
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 97.45
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.32
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.19
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 96.89
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.13
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 95.25
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 94.6
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 94.4
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 92.41
d1tywa_ 554 P22 tailspike protein {Salmonella phage P22 [TaxId 87.33
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 86.12
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 80.93
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=3.9e-60  Score=466.00  Aligned_cols=341  Identities=24%  Similarity=0.409  Sum_probs=292.7

Q ss_pred             CCCCCeEEeecCCccCCCCcccHHHHHHHHHHHcCCCCCcEEEEcCCeEEEe-eeeeeCCccCccEEEEEccEEEeccCc
Q 041993           21 LAAPPSYNVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPGRFFLR-NVAFQGPCKNNRITIRIDGTLVAPSDY   99 (391)
Q Consensus        21 ~~~~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~-~~~l~~~~~s~~~~l~~~G~l~~~~~~   99 (391)
                      .++.+++||+||||++||++|||+|||+||+ ||+.  |++|+||+|+|++. ++.|++.  + ++.|+++|+|++....
T Consensus        15 ~~~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~~--gg~V~iP~Gty~l~~~i~l~g~--~-~~~l~~~G~i~~~~~~   88 (422)
T d1rmga_          15 KGATKTCNILSYGAVADNSTDVGPAITSAWA-ACKS--GGLVYIPSGNYALNTWVTLTGG--S-ATAIQLDGIIYRTGTA   88 (422)
T ss_dssp             HHHHCEEEGGGGTCCCSSSSBCHHHHHHHHH-HHTB--TCEEEECSSEEEECSCEEEESC--E-EEEEEECSEEEECCCC
T ss_pred             cCCCcEEEEecCCCCCCCCccCHHHHHHHHH-hcCC--CCEEEECCCcEEEeCcEEEcCC--C-ceEEEEeEEEEeccCC
Confidence            4567899999999999999999999999995 5764  88999999999776 5888864  6 8999999999887655


Q ss_pred             cccCCCCceEEEEeeeeeEEec-eeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCceeEEEeceee
Q 041993          100 RVIGNAGNWLFFQHVDGVTLNS-GILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNN  178 (391)
Q Consensus       100 ~~~~~~~~~i~~~~~~ni~I~G-G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~n  178 (391)
                      ..+.  ..+....+.+.+.+.| |+|||+|+.||...      ..+|+++++.+|+|+.|++++++|++.|++.+..|++
T Consensus        89 ~~~~--~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~~------~~~p~~l~~~~~~n~~i~git~~nsp~~~i~i~~c~~  160 (422)
T d1rmga_          89 SGNM--IAVTDTTDFELFSSTSKGAVQGFGYVYHAEG------TYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSD  160 (422)
T ss_dssp             SSEE--EEEEEEEEEEEECSSSCCEEECCTHHHHTTT------CCCCEEEEEEEEEEEEEEEEEEECCSSCSEEEEEEEE
T ss_pred             ccCE--EEeccCccEEEEEeecceEEecCcceecCCC------CCCCcEEEEEeeeeeEEECcEecCCCceEEEEecccc
Confidence            4432  1123333445555567 99999999999633      4578999999999999999999999999999999999


Q ss_pred             EEEEeEEEEcCCCCCCCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCCCCcEEE
Q 041993          179 VKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNEAGVQN  258 (391)
Q Consensus       179 v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~~~~i~n  258 (391)
                      ++|+|++|..+. .+++||||+.+ +||+|+||++.++|||++++++++||+|+|++|..+||++|||++.+   ..++|
T Consensus       161 v~i~nv~I~~~~-~~NtDGIdi~~-snv~I~n~~i~~gDDcIaiks~s~nI~i~n~~c~~g~GisiGs~g~~---~~V~n  235 (422)
T d1rmga_         161 GEVYNMAIRGGN-EGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGAD---TDVTD  235 (422)
T ss_dssp             EEEEEEEEECCS-STTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEEEEEEEEEEEEEESSSEEEEEEECTT---EEEEE
T ss_pred             EEEEeeEEcCCC-CCccceEeecc-cEEEEEeeEEEcCCCccccCCCCccEEEEeeEEccccceeEeeccCC---CCEEE
Confidence            999999999864 57999999986 58999999999999999999999999999999999999999998643   46999


Q ss_pred             EEEEeeEEeCCceEEEEEEecCCCCeeEEEEEEEEEEEecCCccEEEEeeeCCCCCCCCCCCcceEEEeEEEEeEEEeeC
Q 041993          259 VTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPIIIDQNYCPDNIGCPGQVSGVKISDVTYQDVHGTSA  338 (391)
Q Consensus       259 I~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~  338 (391)
                      |+|+||++.++..++++|++.  +.|.++||+|+|++|+++.+||.|++.|.+....   ......|+||+|+||+++..
T Consensus       236 V~v~n~~~~~s~~g~~ik~~~--g~G~V~nI~f~Ni~~~nv~~pI~Id~~y~~~~~~---~~~~v~isnIt~~Ni~GT~~  310 (422)
T d1rmga_         236 IVYRNVYTWSSNQMYMIKSNG--GSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAV---AGDGVQLNNITVKNWKGTEA  310 (422)
T ss_dssp             EEEEEEEEESSSCSEEEEEBB--CCEEEEEEEEEEEEEEEESCSEEEETBCTTSCCB---SSSCCEEEEEEEEEEEEEES
T ss_pred             EEEEeEEEeCCCceEEEEEcC--CCceecceEEEEEEEecccccEEEecccCCCCCC---CCCCeEEEEEEEEeEEEEec
Confidence            999999999999999999875  4689999999999999999999999998864332   23456899999999999874


Q ss_pred             ---CcceEEEecCCCCceecEEEEeeEEEecC-CCccceeecccccCccee
Q 041993          339 ---TEVAVNFDCSSKYPCSRIRLEDVKLTYKN-QPAAASCSHADGSASGLV  385 (391)
Q Consensus       339 ---~~~~~~i~~~~~~~~~~v~~~nv~v~~~~-~~~~~~c~~~~g~~~~~~  385 (391)
                         ...++++.|++..||+||+|+||.++.++ ..+.+.|.|++|+.+-+-
T Consensus       311 ~~~~~~~i~l~Cs~~~pc~ni~l~ni~l~~~~g~~~~~~C~na~G~~~~l~  361 (422)
T d1rmga_         311 NGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYLCRSAYGSGYCLK  361 (422)
T ss_dssp             CTTTSCSEEEECBTTBCEEEEEEEEEEEEESSSSCEEEEEESEEEESTTCB
T ss_pred             CCcccccEEEEcCCCCCCcceEEEEEEEEcCCCCCcceEEECceeeEEeec
Confidence               34689999999999999999999999887 566689999999886443
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22 [TaxId: 10754]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure