Citrus Sinensis ID: 042030

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320--

MIPIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIVSWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAADLSTDIGSISMAIIQASTIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAAVLFVAFLVPETKGRHSKKFKYQLQSINKFYNRTPHLSKTMHI

cccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHccccHHHHHHHHHHHHHHHHcccccEEHHcHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccccccccc

cccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHcHHcHHHHHHHHHHHHHHHHHcHHEEEEEHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccccc

mipiyiaeitpknirgaFTATSQFLIVSGMSVMYLVGTIVSWRALALIAAVPCLLQVVglffipesprwlakigkekELETTLQCLRgktadismesadirDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAADLSTDIGSISMAIIQASTIWMGLSLTIIALAFGlqdthlwneatPVLVYVGIMGFSIAFALGmaglpsvimaeifpinikgSAGSLVILLHNCSNWIVTYTFHFtmewsrtgtFSIFWVICAAAVLFVAFLvpetkgrhskkFKYQLQSINKfynrtphlsktmhi

MIPIYIAEitpknirgAFTATSQFLIVSGMSVMYLVGTIVSWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKEKELETTLQCLrgktadismesaDIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAADLSTDIGSISMAIIQASTIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAAVLFVAFLVPETKGRHSKKFKYQLQsinkfynrtphlsktmhi

MIPIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIVSWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGsaaiayyasyiiaaaDLSTDIGSISMAIIQASTIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICaaavlfvaflvPETKGRHSKKFKYQLQSINKFYNRTPHLSKTMHI

**PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIVSWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAADLSTDIGSISMAIIQASTIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAAVLFVAFLVPETKGRHSKKFKYQLQSINKFYN***********

MIPIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIVSWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKEKELETTLQCLRGKTADISMESA*******************LFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAADLSTDIGSISMAIIQASTIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAAVLFVAFLVPETKGRHSKKFK**********************

iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

oooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		322	2.2.26 [Sep-21-2011]
Q3ECP7		470	Sugar transporter ERD6-li	yes	no	0.940	0.644	0.469	3e-80
Q94CI7		474	Sugar transporter ERD6-li	no	no	0.940	0.639	0.462	4e-79
Q94CI6		478	Sugar transporter ERD6-li	no	no	0.940	0.633	0.453	2e-76
Q94AF9		467	Sugar transporter ERD6-li	no	no	0.940	0.648	0.435	2e-75
Q93Z80		458	Sugar transporter ERD6-li	no	no	0.940	0.661	0.435	3e-75
O04036		496	Sugar transporter ERD6 OS	no	no	0.947	0.614	0.414	3e-74
Q94KE0		470	Sugar transporter ERD6-li	no	no	0.940	0.644	0.429	4e-72
P93051		463	Sugar transporter ERD6-li	no	no	0.937	0.652	0.449	5e-72
Q8VZT3		462	Sugar transporter ERD6-li	no	no	0.906	0.632	0.424	2e-70
Q8LBI9		482	Sugar transporter ERD6-li	no	no	0.906	0.605	0.440	2e-66

>sp\|Q3ECP7\|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2	Back alignment and function desciption

 Score =  298 bits (764), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 152/324 (46%), Positives = 212/324 (65%), Gaps = 21/324 (6%)

Query: 1   MIPIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIVSWRALALIAAVPCLLQVVGL 60
           ++P+YIAEITPK +RG FT   Q LI  G+SV YL+G+ + WR LALI  +PC++Q++GL
Sbjct: 142 VVPVYIAEITPKGLRGGFTTVHQLLICLGVSVTYLLGSFIGWRILALIGMIPCVVQMMGL 201

Query: 61  FFIPESPRWLAKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQ 120
           F IPESPRWLAK+GK +E E  LQ LRG++ADIS ES +I+D T+     S+  I DLFQ
Sbjct: 202 FVIPESPRWLAKVGKWEEFEIALQRLRGESADISYESNEIKDYTRRLTDLSEGSIVDLFQ 261

Query: 121 RRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAADLSTDIGSISMAIIQASTIWMGLS 180
            +YA SL VGVGLMV+Q F G   IA+YAS I  +A +S+ IG I+M ++Q     +G+ 
Sbjct: 262 PQYAKSLVVGVGLMVLQQFGGVNGIAFYASSIFESAGVSSKIGMIAMVVVQIPMTTLGVL 321

Query: 181 LT---------------------IIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFALGM 219
           L                      ++ L+F LQ     +     L   G++ ++ +F+LGM
Sbjct: 322 LMDKSGRRPLLLISATGTCIGCFLVGLSFSLQFVKQLSGDASYLALTGVLVYTGSFSLGM 381

Query: 220 AGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAA 279
            G+P VIM+EIFPI+IKGSAGSLV ++    +WI+++TF+F M W+  GTF +F  +C A
Sbjct: 382 GGIPWVIMSEIFPIDIKGSAGSLVTVVSWVGSWIISFTFNFLMNWNPAGTFYVFATVCGA 441

Query: 280 AVLFVAFLVPETKGRHSKKFKYQL 303
            V+FVA LVPETKGR  ++ +Y +
Sbjct: 442 TVIFVAKLVPETKGRTLEEIQYSI 465

Sugar transporter.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q94CI7\|EDL17_ARATH Sugar transporter ERD6-like 17 OS=Arabidopsis thaliana GN=SFP1 PE=2 SV=2	Back alignment and function description

>sp\|Q94CI6\|EDL18_ARATH Sugar transporter ERD6-like 18 OS=Arabidopsis thaliana GN=SFP2 PE=2 SV=1	Back alignment and function description

>sp\|Q94AF9\|EDL11_ARATH Sugar transporter ERD6-like 11 OS=Arabidopsis thaliana GN=At3g05165 PE=2 SV=2	Back alignment and function description

>sp\|Q93Z80\|EDL10_ARATH Sugar transporter ERD6-like 10 OS=Arabidopsis thaliana GN=At3g05160 PE=2 SV=1	Back alignment and function description

>sp\|O04036\|ERD6_ARATH Sugar transporter ERD6 OS=Arabidopsis thaliana GN=ERD6 PE=1 SV=3	Back alignment and function description

>sp\|Q94KE0\|ERDL3_ARATH Sugar transporter ERD6-like 3 OS=Arabidopsis thaliana GN=SUGTL2 PE=2 SV=1	Back alignment and function description

>sp\|P93051\|ERDL7_ARATH Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2	Back alignment and function description

>sp\|Q8VZT3\|EDL12_ARATH Sugar transporter ERD6-like 12 OS=Arabidopsis thaliana GN=SUGTL5 PE=2 SV=1	Back alignment and function description

>sp\|Q8LBI9\|EDL16_ARATH Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		322
255542516		476	sugar transporter, putative [Ricinus com	0.931	0.630	0.557	2e-95
359487977		920	PREDICTED: sugar transporter ERD6-like 5	0.931	0.326	0.548	6e-94
298205029		474	unnamed protein product [Vitis vinifera]	0.931	0.632	0.548	7e-94
310877856		475	putative ERD6-like transporter [Vitis vi	0.931	0.631	0.546	2e-92
359487975		928	PREDICTED: sugar transporter ERD6-like 5	0.931	0.323	0.526	6e-90
310877860		489	putative ERD6-like transporter [Vitis vi	0.922	0.607	0.531	8e-90
298205027		490	unnamed protein product [Vitis vinifera]	0.922	0.606	0.531	8e-90
298205028		476	unnamed protein product [Vitis vinifera]	0.931	0.630	0.529	5e-89
224130930		478	predicted protein [Populus trichocarpa]	0.931	0.627	0.501	9e-88
310877858		477	putative ERD6-like transporter [Vitis vi	0.931	0.628	0.527	1e-87

>gi\|255542516\|ref\|XP_002512321.1\| sugar transporter, putative [Ricinus communis] gi\|223548282\|gb\|EEF49773.1\| sugar transporter, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 179/321 (55%), Positives = 227/321 (70%), Gaps = 21/321 (6%)

Query: 1   MIPIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIVSWRALALIAAVPCLLQVVGL 60
           ++P+YI EITPKN+RGAF AT+QF+I  G+S+ + +GT+VSWR LALI A PC L  VG+
Sbjct: 148 VVPVYITEITPKNVRGAFAATNQFMICCGISLAFFIGTVVSWRTLALICAAPCALHAVGV 207

Query: 61  FFIPESPRWLAKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQ 120
           FFIPESPRWLAKIG+ KE+E  LQ LRGK AD+S E+A I D T TF+  SKAG+ DLFQ
Sbjct: 208 FFIPESPRWLAKIGRVKEVEVILQRLRGKKADVSQEAASIIDYTDTFQGHSKAGLLDLFQ 267

Query: 121 RRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAADLSTDIGSISMAIIQ--------- 171
            RYA++L+ G+G+M  Q F G+ AIA+YAS I   AD S+ +G ISMAIIQ         
Sbjct: 268 WRYAHALTAGIGIMAFQQFGGTNAIAFYASSIFEEADFSSSVGLISMAIIQIPAVAISVL 327

Query: 172 ------------ASTIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFALGM 219
                        S   M LS  II LAF LQ      E TP+LVY+GIMGFSI+F  GM
Sbjct: 328 LTDKAGRRPLLMVSASGMCLSCLIIGLAFCLQGLDKAKEITPILVYIGIMGFSISFPFGM 387

Query: 220 AGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAA 279
           AG+P +IM+E+FPINIKG AGSLVI ++   +W+V+YTF+F MEWS +GTF I+  +CA 
Sbjct: 388 AGIPWIIMSEVFPINIKGVAGSLVIAINWTCSWVVSYTFNFMMEWSSSGTFFIYAGVCAL 447

Query: 280 AVLFVAFLVPETKGRHSKKFK 300
           AVLF+A +VPETKGR  ++ +
Sbjct: 448 AVLFIAKVVPETKGRMLEELQ 468

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359487977\|ref\|XP_002263553.2\| PREDICTED: sugar transporter ERD6-like 5-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|298205029\|emb\|CBI34336.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|310877856\|gb\|ADP37159.1\| putative ERD6-like transporter [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359487975\|ref\|XP_002263588.2\| PREDICTED: sugar transporter ERD6-like 5-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|310877860\|gb\|ADP37161.1\| putative ERD6-like transporter [Vitis vinifera]	Back alignment and taxonomy information

>gi\|298205027\|emb\|CBI34334.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|298205028\|emb\|CBI34335.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224130930\|ref\|XP_002328411.1\| predicted protein [Populus trichocarpa] gi\|222838126\|gb\|EEE76491.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|310877858\|gb\|ADP37160.1\| putative ERD6-like transporter [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		322
TAIR\|locus:2199539		470	AT1G54730 [Arabidopsis thalian	0.562	0.385	0.497	2.3e-68
TAIR\|locus:2146350		474	SFP1 [Arabidopsis thaliana (ta	0.562	0.381	0.464	3.7e-68
TAIR\|locus:2146365		478	SFP2 [Arabidopsis thaliana (ta	0.562	0.378	0.469	7.7e-66
TAIR\|locus:2066400		463	AT2G48020 [Arabidopsis thalian	0.531	0.369	0.485	2.6e-63
TAIR\|locus:2079802		462	AT3G05400 [Arabidopsis thalian	0.562	0.391	0.436	3.3e-63
TAIR\|locus:2036039		464	AT1G08890 [Arabidopsis thalian	0.527	0.366	0.441	5.4e-61
TAIR\|locus:2036009		462	AT1G08900 [Arabidopsis thalian	0.527	0.367	0.441	3.8e-60
TAIR\|locus:2144975		482	AT5G18840 "AT5G18840" [Arabido	0.562	0.375	0.434	6.9e-59
TAIR\|locus:2016407		488	AT1G19450 [Arabidopsis thalian	0.527	0.348	0.380	1e-52
TAIR\|locus:2025132		487	ERDL6 "ERD6-like 6" [Arabidops	0.434	0.287	0.457	7.7e-52

TAIR\|locus:2199539 AT1G54730 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 453 (164.5 bits), Expect = 2.3e-68, Sum P(2) = 2.3e-68
 Identities = 90/181 (49%), Positives = 120/181 (66%)

Query:     1 MIPIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIVSWRALALIAAVPCLLQVVGL 60
             ++P+YIAEITPK +RG FT   Q LI  G+SV YL+G+ + WR LALI  +PC++Q++GL
Sbjct:   142 VVPVYIAEITPKGLRGGFTTVHQLLICLGVSVTYLLGSFIGWRILALIGMIPCVVQMMGL 201

Query:    61 FFIPESPRWLAKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQ 120
             F IPESPRWLAK+GK +E E  LQ LRG++ADIS ES +I+D T+     S+  I DLFQ
Sbjct:   202 FVIPESPRWLAKVGKWEEFEIALQRLRGESADISYESNEIKDYTRRLTDLSEGSIVDLFQ 261

Query:   121 RRYAYSLSVGVGLMVMQPFVGXXXXXXXXXXXXXXXDLSTDIGSISMAIIQASTIWMGLS 180
              +YA SL VGVGLMV+Q F G                +S+ IG I+M ++Q     +G+ 
Sbjct:   262 PQYAKSLVVGVGLMVLQQFGGVNGIAFYASSIFESAGVSSKIGMIAMVVVQIPMTTLGVL 321

Query:   181 L 181
             L
Sbjct:   322 L 322

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR\|locus:2146350 SFP1 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2146365 SFP2 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2066400 AT2G48020 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2079802 AT3G05400 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2036039 AT1G08890 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2036009 AT1G08900 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2144975 AT5G18840 "AT5G18840" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2016407 AT1G19450 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2025132 ERDL6 "ERD6-like 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		322
pfam00083		449	pfam00083, Sugar_tr, Sugar (and other) transporter	1e-39
TIGR00879		481	TIGR00879, SP, MFS transporter, sugar porter (SP)	4e-36
PRK10077		479	PRK10077, xylE, D-xylose transporter XylE; Provisi	6e-35
TIGR00898		505	TIGR00898, 2A0119, cation transport protein	1e-12
TIGR01299		742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	1e-05

>gnl\|CDD\|215702 pfam00083, Sugar_tr, Sugar (and other) transporter	Back alignment and domain information

 Score =  144 bits (365), Expect = 1e-39
 Identities = 92/324 (28%), Positives = 150/324 (46%), Gaps = 34/324 (10%)

Query: 1   MIPIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIVS-------WRALALIAAVPC 53
           ++P+YI+EI PK +RGA  +  Q  I  G+ V  ++G  ++       WR    +  VP 
Sbjct: 121 LVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPA 180

Query: 54  LLQVVGLFFIPESPRWLAKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKA 113
           +L ++GL F+PESPRWL   GK +E    L  LRG  +D+  E  + +D  +   +  KA
Sbjct: 181 ILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRG-VSDVDQEIQEEKDSLERSVEAEKA 239

Query: 114 GIFDLFQRR-YAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAADLSTD-IGSISMAII- 170
              +LF+ +     L +GV L + Q   G  AI YY+  I     LS   + +I + ++ 
Sbjct: 240 SWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGVVN 299

Query: 171 QAST--------------------IWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMG 210
              T                      M +   ++ +A           A  V + V I+ 
Sbjct: 300 FVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKG--AGIVAI-VFILL 356

Query: 211 FSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTF 270
           F   FALG   +P VI++E+FP+ ++  A ++    +  +N+++ + F           F
Sbjct: 357 FIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYVF 416

Query: 271 SIFWVICAAAVLFVAFLVPETKGR 294
            +F  +    +LFV F VPETKGR
Sbjct: 417 LVFAGLLVLFILFVFFFVPETKGR 440

Length = 449

>gnl\|CDD\|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family	Back alignment and domain information

>gnl\|CDD\|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional	Back alignment and domain information

>gnl\|CDD\|233176 TIGR00898, 2A0119, cation transport protein	Back alignment and domain information

>gnl\|CDD\|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		322
KOG0569		485	consensus Permease of the major facilitator superf	100.0
KOG0254		513	consensus Predicted transporter (major facilitator	100.0
TIGR00887		502	2A0109 phosphate:H+ symporter. This model represen	99.97
PF00083		451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.97
PRK10077		479	xylE D-xylose transporter XylE; Provisional	99.96
TIGR01299		742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.96
TIGR00898		505	2A0119 cation transport protein.	99.95
KOG0253		528	consensus Synaptic vesicle transporter SV2 (major	99.94
TIGR00879		481	SP MFS transporter, sugar porter (SP) family. This	99.92
KOG0255		521	consensus Synaptic vesicle transporter SVOP and re	99.92
PRK10642		490	proline/glycine betaine transporter; Provisional	99.9
KOG0252		538	consensus Inorganic phosphate transporter [Inorgan	99.88
TIGR00903		368	2A0129 major facilitator 4 family protein. This fa	99.85
PRK09952		438	shikimate transporter; Provisional	99.82
PRK10406		432	alpha-ketoglutarate transporter; Provisional	99.82
COG2271		448	UhpC Sugar phosphate permease [Carbohydrate transp	99.81
PRK10489		417	enterobactin exporter EntS; Provisional	99.8
PRK11663		434	regulatory protein UhpC; Provisional	99.79
PRK12307		426	putative sialic acid transporter; Provisional	99.78
PRK11551		406	putative 3-hydroxyphenylpropionic transporter MhpT	99.77
TIGR00893		399	2A0114 d-galactonate transporter.	99.76
PRK15075		434	citrate-proton symporter; Provisional	99.74
PRK11273		452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.74
TIGR00712		438	glpT glycerol-3-phosphate transporter. This model	99.74
PRK03893		496	putative sialic acid transporter; Provisional	99.72
TIGR00894		465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.71
TIGR02332		412	HpaX 4-hydroxyphenylacetate permease. This protein	99.71
TIGR00891		405	2A0112 putative sialic acid transporter.	99.7
PRK09556		467	uhpT sugar phosphate antiporter; Reviewed	99.7
TIGR00895		398	2A0115 benzoate transport.	99.69
PRK03545		390	putative arabinose transporter; Provisional	99.69
COG2814		394	AraJ Arabinose efflux permease [Carbohydrate trans	99.68
KOG2532		466	consensus Permease of the major facilitator superf	99.68
PRK11010		491	ampG muropeptide transporter; Validated	99.68
TIGR00883		394	2A0106 metabolite-proton symporter. This model rep	99.66
PLN00028		476	nitrate transmembrane transporter; Provisional	99.65
KOG2533		495	consensus Permease of the major facilitator superf	99.64
TIGR00892		455	2A0113 monocarboxylate transporter 1.	99.63
TIGR00881		379	2A0104 phosphoglycerate transporter family protein	99.63
PRK09705		393	cynX putative cyanate transporter; Provisional	99.61
PRK10213		394	nepI ribonucleoside transporter; Reviewed	99.58
TIGR00890		377	2A0111 Oxalate/Formate Antiporter.	99.57
PRK11902		402	ampG muropeptide transporter; Reviewed	99.57
PRK11646		400	multidrug resistance protein MdtH; Provisional	99.56
PRK05122		399	major facilitator superfamily transporter; Provisi	99.56
PRK12382		392	putative transporter; Provisional	99.56
TIGR00899		375	2A0120 sugar efflux transporter. This family of pr	99.55
TIGR00900		365	2A0121 H+ Antiporter protein.	99.54
PRK15403		413	multidrug efflux system protein MdtM; Provisional	99.53
TIGR00710		385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.52
PRK11195		393	lysophospholipid transporter LplT; Provisional	99.52
PRK03699		394	putative transporter; Provisional	99.52
COG2223		417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.51
TIGR00897		402	2A0118 polyol permease family. This family of prot	99.51
PRK09874		408	drug efflux system protein MdtG; Provisional	99.5
PRK15402		406	multidrug efflux system translocase MdfA; Provisio	99.5
PRK10091		382	MFS transport protein AraJ; Provisional	99.49
PRK06814		1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.48
PRK15011		393	sugar efflux transporter B; Provisional	99.48
TIGR00711		485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.48
TIGR00902		382	2A0127 phenyl proprionate permease family protein.	99.48
TIGR00901		356	2A0125 AmpG-related permease.	99.46
cd06174		352	MFS The Major Facilitator Superfamily (MFS) is a l	99.46
PRK08633		1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.46
PRK11043		401	putative transporter; Provisional	99.46
TIGR02718		390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.46
PF07690		352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.45
PRK09528		420	lacY galactoside permease; Reviewed	99.44
PRK10504		471	putative transporter; Provisional	99.44
PRK10054		395	putative transporter; Provisional	99.43
PRK11102		377	bicyclomycin/multidrug efflux system; Provisional	99.43
PRK14995		495	methyl viologen resistance protein SmvA; Provision	99.4
PRK10473		392	multidrug efflux system protein MdtL; Provisional	99.39
KOG1330		493	consensus Sugar transporter/spinster transmembrane	99.38
TIGR00792		437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.37
PRK11128		382	putative 3-phenylpropionic acid transporter; Provi	99.37
PRK15034		462	nitrate/nitrite transport protein NarU; Provisiona	99.36
TIGR00889		418	2A0110 nucleoside transporter. This family of prot	99.35
PRK11652		394	emrD multidrug resistance protein D; Provisional	99.35
PRK03633		381	putative MFS family transporter protein; Provision	99.32
PF05977		524	MFS_3: Transmembrane secretion effector; InterPro:	99.32
COG2807		395	CynX Cyanate permease [Inorganic ion transport and	99.29
TIGR00882		396	2A0105 oligosaccharide:H+ symporter.	99.25
TIGR00896		355	CynX cyanate transporter. This family of proteins	99.24
KOG2504		509	consensus Monocarboxylate transporter [Carbohydrat	99.24
TIGR01301		477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.23
TIGR01272		310	gluP glucose/galactose transporter. Disruption of	99.2
TIGR00886		366	2A0108 nitrite extrusion protein (nitrite facilita	99.18
PF11700		477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.18
TIGR00885		410	fucP L-fucose:H+ symporter permease. This family d	99.17
PRK10133		438	L-fucose transporter; Provisional	99.11
TIGR00806		511	rfc RFC reduced folate carrier. Proteins of the RF	99.1
TIGR00788		468	fbt folate/biopterin transporter. The only functio	99.08
COG2271		448	UhpC Sugar phosphate permease [Carbohydrate transp	99.07
KOG2615		451	consensus Permease of the major facilitator superf	99.07
COG0738		422	FucP Fucose permease [Carbohydrate transport and m	99.04
PF03825		400	Nuc_H_symport: Nucleoside H+ symporter	99.02
PRK10429		473	melibiose:sodium symporter; Provisional	99.02
PF06609		599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.02
PRK11462		460	putative transporter; Provisional	99.0
TIGR00805		633	oat sodium-independent organic anion transporter.	98.99
PRK09669		444	putative symporter YagG; Provisional	98.97
COG2211		467	MelB Na+/melibiose symporter and related transport	98.95
TIGR00924		475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.95
TIGR00895		398	2A0115 benzoate transport.	98.92
PTZ00207		591	hypothetical protein; Provisional	98.92
PF13347		428	MFS_2: MFS/sugar transport protein	98.9
PF01306		412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.9
PRK11663		434	regulatory protein UhpC; Provisional	98.86
TIGR02332		412	HpaX 4-hydroxyphenylacetate permease. This protein	98.82
PRK10207		489	dipeptide/tripeptide permease B; Provisional	98.81
PRK09584		500	tppB putative tripeptide transporter permease; Rev	98.81
TIGR00710		385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.76
PRK10642		490	proline/glycine betaine transporter; Provisional	98.75
PRK10054		395	putative transporter; Provisional	98.75
KOG3626		735	consensus Organic anion transporter [Secondary met	98.73
PRK09848		448	glucuronide transporter; Provisional	98.72
TIGR00893		399	2A0114 d-galactonate transporter.	98.72
KOG2563		480	consensus Permease of the major facilitator superf	98.71
PRK03545		390	putative arabinose transporter; Provisional	98.69
COG2814		394	AraJ Arabinose efflux permease [Carbohydrate trans	98.68
PRK10473		392	multidrug efflux system protein MdtL; Provisional	98.66
TIGR01299		742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.66
TIGR00712		438	glpT glycerol-3-phosphate transporter. This model	98.58
PRK10213		394	nepI ribonucleoside transporter; Reviewed	98.57
PLN00028		476	nitrate transmembrane transporter; Provisional	98.56
PRK11273		452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.55
TIGR00891		405	2A0112 putative sialic acid transporter.	98.54
PRK11551		406	putative 3-hydroxyphenylpropionic transporter MhpT	98.53
TIGR00711		485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.53
PRK14995		495	methyl viologen resistance protein SmvA; Provision	98.53
TIGR00881		379	2A0104 phosphoglycerate transporter family protein	98.5
KOG4686		459	consensus Predicted sugar transporter [Carbohydrat	98.49
PRK09874		408	drug efflux system protein MdtG; Provisional	98.49
PRK11646		400	multidrug resistance protein MdtH; Provisional	98.48
PRK03893		496	putative sialic acid transporter; Provisional	98.48
PRK10504		471	putative transporter; Provisional	98.47
PRK15402		406	multidrug efflux system translocase MdfA; Provisio	98.45
KOG3764		464	consensus Vesicular amine transporter [Intracellul	98.43
COG2270		438	Permeases of the major facilitator superfamily [Ge	98.43
PRK10091		382	MFS transport protein AraJ; Provisional	98.43
PRK09556		467	uhpT sugar phosphate antiporter; Reviewed	98.43
PRK11652		394	emrD multidrug resistance protein D; Provisional	98.42
PRK15403		413	multidrug efflux system protein MdtM; Provisional	98.42
PRK15462		493	dipeptide/tripeptide permease D; Provisional	98.41
PRK10489		417	enterobactin exporter EntS; Provisional	98.41
PRK11102		377	bicyclomycin/multidrug efflux system; Provisional	98.38
PRK12307		426	putative sialic acid transporter; Provisional	98.38
PRK15034		462	nitrate/nitrite transport protein NarU; Provisiona	98.37
PRK03699		394	putative transporter; Provisional	98.36
COG2223		417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.36
TIGR00894		465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.35
PRK15462		493	dipeptide/tripeptide permease D; Provisional	98.33
TIGR00903		368	2A0129 major facilitator 4 family protein. This fa	98.33
PF07690		352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.33
PF03137		539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.33
PF03209		403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.3
TIGR00900		365	2A0121 H+ Antiporter protein.	98.28
TIGR00886		366	2A0108 nitrite extrusion protein (nitrite facilita	98.24
TIGR00879		481	SP MFS transporter, sugar porter (SP) family. This	98.22
PTZ00207		591	hypothetical protein; Provisional	98.21
PF03092		433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.2
TIGR00924		475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.19
KOG2816		463	consensus Predicted transporter ADD1 (major facili	98.19
PRK11902		402	ampG muropeptide transporter; Reviewed	98.18
TIGR00892		455	2A0113 monocarboxylate transporter 1.	98.18
PF06813		250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.16
TIGR00901		356	2A0125 AmpG-related permease.	98.16
PRK11043		401	putative transporter; Provisional	98.15
TIGR00887		502	2A0109 phosphate:H+ symporter. This model represen	98.14
TIGR00880		141	2_A_01_02 Multidrug resistance protein.	98.12
PRK10077		479	xylE D-xylose transporter XylE; Provisional	98.11
PRK10207		489	dipeptide/tripeptide permease B; Provisional	98.1
TIGR00897		402	2A0118 polyol permease family. This family of prot	98.09
TIGR00890		377	2A0111 Oxalate/Formate Antiporter.	98.06
PF05977		524	MFS_3: Transmembrane secretion effector; InterPro:	98.05
PRK11010		491	ampG muropeptide transporter; Validated	98.04
PRK09584		500	tppB putative tripeptide transporter permease; Rev	98.01
PRK11195		393	lysophospholipid transporter LplT; Provisional	97.99
cd06174		352	MFS The Major Facilitator Superfamily (MFS) is a l	97.98
TIGR00805		633	oat sodium-independent organic anion transporter.	97.97
PF01770		412	Folate_carrier: Reduced folate carrier; InterPro:	97.97
PRK06814		1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.96
TIGR01301		477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.93
PRK05122		399	major facilitator superfamily transporter; Provisi	97.93
PRK03633		381	putative MFS family transporter protein; Provision	97.92
TIGR00885		410	fucP L-fucose:H+ symporter permease. This family d	97.92
PRK15011		393	sugar efflux transporter B; Provisional	97.91
TIGR00899		375	2A0120 sugar efflux transporter. This family of pr	97.88
TIGR00806		511	rfc RFC reduced folate carrier. Proteins of the RF	97.86
KOG2325		488	consensus Predicted transporter/transmembrane prot	97.86
KOG2533		495	consensus Permease of the major facilitator superf	97.85
TIGR02718		390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.82
PRK12382		392	putative transporter; Provisional	97.81
PRK09528		420	lacY galactoside permease; Reviewed	97.77
KOG3810		433	consensus Micronutrient transporters (folate trans	97.73
PRK09705		393	cynX putative cyanate transporter; Provisional	97.73
TIGR00902		382	2A0127 phenyl proprionate permease family protein.	97.73
KOG3764		464	consensus Vesicular amine transporter [Intracellul	97.7
PRK08633		1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.68
KOG1330		493	consensus Sugar transporter/spinster transmembrane	97.67
PF06609		599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.67
TIGR00898		505	2A0119 cation transport protein.	97.66
PRK11128		382	putative 3-phenylpropionic acid transporter; Provi	97.65
PRK10406		432	alpha-ketoglutarate transporter; Provisional	97.62
PRK15075		434	citrate-proton symporter; Provisional	97.62
KOG2615		451	consensus Permease of the major facilitator superf	97.61
TIGR00880		141	2_A_01_02 Multidrug resistance protein.	97.57
COG3104		498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.52
KOG2325		488	consensus Predicted transporter/transmembrane prot	97.49
PRK11462		460	putative transporter; Provisional	97.48
KOG2532		466	consensus Permease of the major facilitator superf	97.45
PRK09669		444	putative symporter YagG; Provisional	97.44
TIGR00792		437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.43
KOG2504		509	consensus Monocarboxylate transporter [Carbohydrat	97.32
PRK10133		438	L-fucose transporter; Provisional	97.29
KOG0569		485	consensus Permease of the major facilitator superf	97.29
PRK09952		438	shikimate transporter; Provisional	97.28
TIGR00882		396	2A0105 oligosaccharide:H+ symporter.	97.2
TIGR00896		355	CynX cyanate transporter. This family of proteins	97.18
PF13347		428	MFS_2: MFS/sugar transport protein	97.1
COG3104		498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.07
PF07672		267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.02
COG2211		467	MelB Na+/melibiose symporter and related transport	96.97
KOG0255		521	consensus Synaptic vesicle transporter SVOP and re	96.95
KOG3098		461	consensus Uncharacterized conserved protein [Funct	96.92
PRK10429		473	melibiose:sodium symporter; Provisional	96.7
COG0738		422	FucP Fucose permease [Carbohydrate transport and m	96.69
PF06963		432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.69
TIGR00889		418	2A0110 nucleoside transporter. This family of prot	96.66
TIGR00788		468	fbt folate/biopterin transporter. The only functio	96.58
TIGR01272		310	gluP glucose/galactose transporter. Disruption of	96.5
TIGR00883		394	2A0106 metabolite-proton symporter. This model rep	96.47
PF01306		412	LacY_symp: LacY proton/sugar symporter; InterPro:	96.4
KOG3762		618	consensus Predicted transporter [General function	96.38
PF02487		402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.32
PF03092		433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.26
KOG2816		463	consensus Predicted transporter ADD1 (major facili	96.12
PF03209		403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.09
KOG0254		513	consensus Predicted transporter (major facilitator	95.91
TIGR00926		654	2A1704 Peptide:H+ symporter (also transports b-lac	95.7
PF13000		544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	95.34
PRK09848		448	glucuronide transporter; Provisional	95.32
PF03825		400	Nuc_H_symport: Nucleoside H+ symporter	94.99
PF00854		372	PTR2: POT family; InterPro: IPR000109 This entry r	94.64
COG2807		395	CynX Cyanate permease [Inorganic ion transport and	94.49
KOG0253		528	consensus Synaptic vesicle transporter SV2 (major	94.19
KOG0252		538	consensus Inorganic phosphate transporter [Inorgan	93.13
KOG3574		510	consensus Acetyl-CoA transporter [Inorganic ion tr	92.81
PF00083		451	Sugar_tr: Sugar (and other) transporter; InterPro:	92.67
PF11700		477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	92.28
TIGR00769		472	AAA ADP/ATP carrier protein family. These proteins	92.2
KOG3626		735	consensus Organic anion transporter [Secondary met	91.36
TIGR00769		472	AAA ADP/ATP carrier protein family. These proteins	89.72
PF05631		354	DUF791: Protein of unknown function (DUF791); Inte	89.51
PF03137		539	OATP: Organic Anion Transporter Polypeptide (OATP)	88.08
TIGR00939		437	2a57 Equilibrative Nucleoside Transporter (ENT).	87.84
KOG1237		571	consensus H+/oligopeptide symporter [Amino acid tr	86.71
PF06813		250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	85.44
PF01733		309	Nucleoside_tran: Nucleoside transporter; InterPro:	85.18
KOG2563		480	consensus Permease of the major facilitator superf	85.18
COG5336		116	Uncharacterized protein conserved in bacteria [Fun	84.73
PF03219		491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	84.42
PF02487		402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	84.27
PF03219		491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	83.65
PRK10697		118	DNA-binding transcriptional activator PspC; Provis	80.09

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=4.3e-38  Score=264.76  Aligned_cols=303  Identities=28%  Similarity=0.441  Sum_probs=242.1

Q ss_pred             cceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh------hhHHHHHHhhHHHHHHHHHhhccCCChHHHHh-cC
Q 042030            2 IPIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV------SWRALALIAAVPCLLQVVGLFFIPESPRWLAK-IG   74 (322)
Q Consensus         2 ~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~------~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~-~~   74 (322)
                      .+.|+.|..|.+.||....+.+.+..+|.+++..++..-      .|++.+.+..+++++.++...++|||||||.. |+
T Consensus       137 ~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~  216 (485)
T KOG0569|consen  137 VPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKG  216 (485)
T ss_pred             HHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcC
Confidence            477999999999999999999999999999997776432      69999999999999999999999999999987 89


Q ss_pred             CHHHHHHHHHHHhCCchhhhhhHHHHHHhhhh-cccccccchhhhcchh-hHHHHHHHHHHHhhhhccchhhhHhcHHHH
Q 042030           75 KEKELETTLQCLRGKTADISMESADIRDCTQT-FEKDSKAGIFDLFQRR-YAYSLSVGVGLMVMQPFVGSAAIAYYASYI  152 (322)
Q Consensus        75 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (322)
                      |+++|++.+++.++++.+.++..++.++.+++ .+++++.+++++++++ .+++..+.+.+..++++++.+.+.+|...+
T Consensus       217 ~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i  296 (485)
T KOG0569|consen  217 DEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSI  296 (485)
T ss_pred             CHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHH
Confidence            99999999999998863333322222222222 2223667899999875 556677888899999999999999999999


Q ss_pred             HHHcCCCchh---HHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHH
Q 042030          153 IAAADLSTDI---GSISMAIIQ---------------------ASTIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGI  208 (322)
Q Consensus       153 ~~~~g~~~~~---~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (322)
                      +++.|++...   ++...+.++                     .+..++.+..+++...........  ++..+..+.+.
T Consensus       297 ~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~--~~~~y~~i~~~  374 (485)
T KOG0569|consen  297 FKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG--SWLSYLCIAAI  374 (485)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHH
Confidence            9999998763   333333333                     333334444444443333332211  23445567788


Q ss_pred             HHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhc
Q 042030          209 MGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAAVLFVAFLV  288 (322)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (322)
                      +.+...++.|.+|+.|.+.+|++|++.|+++.++...++|+.+++..+.++.+.+.-....|+.+.+.+++..++.+.++
T Consensus       375 ~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~l  454 (485)
T KOG0569|consen  375 FLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYL  454 (485)
T ss_pred             HHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhC
Confidence            88899999999999999999999999999999999999999999999999999993334889999999999999999999


Q ss_pred             cCCCCCChhHHHHHHHhh
Q 042030          289 PETKGRHSKKFKYQLQSI  306 (322)
Q Consensus       289 ~et~~~~~~~~~~~~~~~  306 (322)
                      ||||+|+..|+.++++++
T Consensus       455 PETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  455 PETKGRTPYEIIEELEKR  472 (485)
T ss_pred             cccCCCCHHHHHHHHHhC
Confidence            999999999998888766

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>TIGR00887 2A0109 phosphate:H+ symporter	Back alignment and domain information

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters	Back alignment and domain information

>PRK10077 xylE D-xylose transporter XylE; Provisional	Back alignment and domain information

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2	Back alignment and domain information

>TIGR00898 2A0119 cation transport protein	Back alignment and domain information

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>TIGR00879 SP MFS transporter, sugar porter (SP) family	Back alignment and domain information

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>PRK10642 proline/glycine betaine transporter; Provisional	Back alignment and domain information

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00903 2A0129 major facilitator 4 family protein	Back alignment and domain information

>PRK09952 shikimate transporter; Provisional	Back alignment and domain information

>PRK10406 alpha-ketoglutarate transporter; Provisional	Back alignment and domain information

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK10489 enterobactin exporter EntS; Provisional	Back alignment and domain information

>PRK11663 regulatory protein UhpC; Provisional	Back alignment and domain information

>PRK12307 putative sialic acid transporter; Provisional	Back alignment and domain information

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional	Back alignment and domain information

>TIGR00893 2A0114 d-galactonate transporter	Back alignment and domain information

>PRK15075 citrate-proton symporter; Provisional	Back alignment and domain information

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional	Back alignment and domain information

>TIGR00712 glpT glycerol-3-phosphate transporter	Back alignment and domain information

>PRK03893 putative sialic acid transporter; Provisional	Back alignment and domain information

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter	Back alignment and domain information

>TIGR02332 HpaX 4-hydroxyphenylacetate permease	Back alignment and domain information

>TIGR00891 2A0112 putative sialic acid transporter	Back alignment and domain information

>PRK09556 uhpT sugar phosphate antiporter; Reviewed	Back alignment and domain information

>TIGR00895 2A0115 benzoate transport	Back alignment and domain information

>PRK03545 putative arabinose transporter; Provisional	Back alignment and domain information

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK11010 ampG muropeptide transporter; Validated	Back alignment and domain information

>TIGR00883 2A0106 metabolite-proton symporter	Back alignment and domain information

>PLN00028 nitrate transmembrane transporter; Provisional	Back alignment and domain information

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR00892 2A0113 monocarboxylate transporter 1	Back alignment and domain information

>TIGR00881 2A0104 phosphoglycerate transporter family protein	Back alignment and domain information

>PRK09705 cynX putative cyanate transporter; Provisional	Back alignment and domain information

>PRK10213 nepI ribonucleoside transporter; Reviewed	Back alignment and domain information

>TIGR00890 2A0111 Oxalate/Formate Antiporter	Back alignment and domain information

>PRK11902 ampG muropeptide transporter; Reviewed	Back alignment and domain information

>PRK11646 multidrug resistance protein MdtH; Provisional	Back alignment and domain information

>PRK05122 major facilitator superfamily transporter; Provisional	Back alignment and domain information

>PRK12382 putative transporter; Provisional	Back alignment and domain information

>TIGR00899 2A0120 sugar efflux transporter	Back alignment and domain information

>TIGR00900 2A0121 H+ Antiporter protein	Back alignment and domain information

>PRK15403 multidrug efflux system protein MdtM; Provisional	Back alignment and domain information

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily	Back alignment and domain information

>PRK11195 lysophospholipid transporter LplT; Provisional	Back alignment and domain information

>PRK03699 putative transporter; Provisional	Back alignment and domain information

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00897 2A0118 polyol permease family	Back alignment and domain information

>PRK09874 drug efflux system protein MdtG; Provisional	Back alignment and domain information

>PRK15402 multidrug efflux system translocase MdfA; Provisional	Back alignment and domain information

>PRK10091 MFS transport protein AraJ; Provisional	Back alignment and domain information

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional	Back alignment and domain information

>PRK15011 sugar efflux transporter B; Provisional	Back alignment and domain information

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily	Back alignment and domain information

>TIGR00902 2A0127 phenyl proprionate permease family protein	Back alignment and domain information

>TIGR00901 2A0125 AmpG-related permease	Back alignment and domain information

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters	Back alignment and domain information

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated	Back alignment and domain information

>PRK11043 putative transporter; Provisional	Back alignment and domain information

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family	Back alignment and domain information

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms	Back alignment and domain information

>PRK09528 lacY galactoside permease; Reviewed	Back alignment and domain information

>PRK10504 putative transporter; Provisional	Back alignment and domain information

>PRK10054 putative transporter; Provisional	Back alignment and domain information

>PRK11102 bicyclomycin/multidrug efflux system; Provisional	Back alignment and domain information

>PRK14995 methyl viologen resistance protein SmvA; Provisional	Back alignment and domain information

>PRK10473 multidrug efflux system protein MdtL; Provisional	Back alignment and domain information

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter	Back alignment and domain information

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional	Back alignment and domain information

>PRK15034 nitrate/nitrite transport protein NarU; Provisional	Back alignment and domain information

>TIGR00889 2A0110 nucleoside transporter	Back alignment and domain information

>PRK11652 emrD multidrug resistance protein D; Provisional	Back alignment and domain information

>PRK03633 putative MFS family transporter protein; Provisional	Back alignment and domain information

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily	Back alignment and domain information

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00882 2A0105 oligosaccharide:H+ symporter	Back alignment and domain information

>TIGR00896 CynX cyanate transporter	Back alignment and domain information

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter	Back alignment and domain information

>TIGR01272 gluP glucose/galactose transporter	Back alignment and domain information

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)	Back alignment and domain information

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions	Back alignment and domain information

>TIGR00885 fucP L-fucose:H+ symporter permease	Back alignment and domain information

>PRK10133 L-fucose transporter; Provisional	Back alignment and domain information

>TIGR00806 rfc RFC reduced folate carrier	Back alignment and domain information

>TIGR00788 fbt folate/biopterin transporter	Back alignment and domain information

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]	Back alignment and domain information

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF03825 Nuc_H_symport: Nucleoside H+ symporter	Back alignment and domain information

>PRK10429 melibiose:sodium symporter; Provisional	Back alignment and domain information

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins	Back alignment and domain information

>PRK11462 putative transporter; Provisional	Back alignment and domain information

>TIGR00805 oat sodium-independent organic anion transporter	Back alignment and domain information

>PRK09669 putative symporter YagG; Provisional	Back alignment and domain information

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial	Back alignment and domain information

>TIGR00895 2A0115 benzoate transport	Back alignment and domain information

>PTZ00207 hypothetical protein; Provisional	Back alignment and domain information

>PF13347 MFS_2: MFS/sugar transport protein	Back alignment and domain information

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []	Back alignment and domain information

>PRK11663 regulatory protein UhpC; Provisional	Back alignment and domain information

>TIGR02332 HpaX 4-hydroxyphenylacetate permease	Back alignment and domain information

>PRK10207 dipeptide/tripeptide permease B; Provisional	Back alignment and domain information

>PRK09584 tppB putative tripeptide transporter permease; Reviewed	Back alignment and domain information

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily	Back alignment and domain information

>PRK10642 proline/glycine betaine transporter; Provisional	Back alignment and domain information

>PRK10054 putative transporter; Provisional	Back alignment and domain information

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>PRK09848 glucuronide transporter; Provisional	Back alignment and domain information

>TIGR00893 2A0114 d-galactonate transporter	Back alignment and domain information

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]	Back alignment and domain information

>PRK03545 putative arabinose transporter; Provisional	Back alignment and domain information

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK10473 multidrug efflux system protein MdtL; Provisional	Back alignment and domain information

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2	Back alignment and domain information

>TIGR00712 glpT glycerol-3-phosphate transporter	Back alignment and domain information

>PRK10213 nepI ribonucleoside transporter; Reviewed	Back alignment and domain information

>PLN00028 nitrate transmembrane transporter; Provisional	Back alignment and domain information

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional	Back alignment and domain information

>TIGR00891 2A0112 putative sialic acid transporter	Back alignment and domain information

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional	Back alignment and domain information

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily	Back alignment and domain information

>PRK14995 methyl viologen resistance protein SmvA; Provisional	Back alignment and domain information

>TIGR00881 2A0104 phosphoglycerate transporter family protein	Back alignment and domain information

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK09874 drug efflux system protein MdtG; Provisional	Back alignment and domain information

>PRK11646 multidrug resistance protein MdtH; Provisional	Back alignment and domain information

>PRK03893 putative sialic acid transporter; Provisional	Back alignment and domain information

>PRK10504 putative transporter; Provisional	Back alignment and domain information

>PRK15402 multidrug efflux system translocase MdfA; Provisional	Back alignment and domain information

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]	Back alignment and domain information

>PRK10091 MFS transport protein AraJ; Provisional	Back alignment and domain information

>PRK09556 uhpT sugar phosphate antiporter; Reviewed	Back alignment and domain information

>PRK11652 emrD multidrug resistance protein D; Provisional	Back alignment and domain information

>PRK15403 multidrug efflux system protein MdtM; Provisional	Back alignment and domain information

>PRK15462 dipeptide/tripeptide permease D; Provisional	Back alignment and domain information

>PRK10489 enterobactin exporter EntS; Provisional	Back alignment and domain information

>PRK11102 bicyclomycin/multidrug efflux system; Provisional	Back alignment and domain information

>PRK12307 putative sialic acid transporter; Provisional	Back alignment and domain information

>PRK15034 nitrate/nitrite transport protein NarU; Provisional	Back alignment and domain information

>PRK03699 putative transporter; Provisional	Back alignment and domain information

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter	Back alignment and domain information

>PRK15462 dipeptide/tripeptide permease D; Provisional	Back alignment and domain information

>TIGR00903 2A0129 major facilitator 4 family protein	Back alignment and domain information

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms	Back alignment and domain information

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)	Back alignment and domain information

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon	Back alignment and domain information

>TIGR00900 2A0121 H+ Antiporter protein	Back alignment and domain information

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)	Back alignment and domain information

>TIGR00879 SP MFS transporter, sugar porter (SP) family	Back alignment and domain information

>PTZ00207 hypothetical protein; Provisional	Back alignment and domain information

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins	Back alignment and domain information

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial	Back alignment and domain information

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>PRK11902 ampG muropeptide transporter; Reviewed	Back alignment and domain information

>TIGR00892 2A0113 monocarboxylate transporter 1	Back alignment and domain information

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins	Back alignment and domain information

>TIGR00901 2A0125 AmpG-related permease	Back alignment and domain information

>PRK11043 putative transporter; Provisional	Back alignment and domain information

>TIGR00887 2A0109 phosphate:H+ symporter	Back alignment and domain information

>TIGR00880 2_A_01_02 Multidrug resistance protein	Back alignment and domain information

>PRK10077 xylE D-xylose transporter XylE; Provisional	Back alignment and domain information

>PRK10207 dipeptide/tripeptide permease B; Provisional	Back alignment and domain information

>TIGR00897 2A0118 polyol permease family	Back alignment and domain information

>TIGR00890 2A0111 Oxalate/Formate Antiporter	Back alignment and domain information

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily	Back alignment and domain information

>PRK11010 ampG muropeptide transporter; Validated	Back alignment and domain information

>PRK09584 tppB putative tripeptide transporter permease; Reviewed	Back alignment and domain information

>PRK11195 lysophospholipid transporter LplT; Provisional	Back alignment and domain information

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters	Back alignment and domain information

>TIGR00805 oat sodium-independent organic anion transporter	Back alignment and domain information

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)	Back alignment and domain information

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional	Back alignment and domain information

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter	Back alignment and domain information

>PRK05122 major facilitator superfamily transporter; Provisional	Back alignment and domain information

>PRK03633 putative MFS family transporter protein; Provisional	Back alignment and domain information

>TIGR00885 fucP L-fucose:H+ symporter permease	Back alignment and domain information

>PRK15011 sugar efflux transporter B; Provisional	Back alignment and domain information

>TIGR00899 2A0120 sugar efflux transporter	Back alignment and domain information

>TIGR00806 rfc RFC reduced folate carrier	Back alignment and domain information

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]	Back alignment and domain information

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family	Back alignment and domain information

>PRK12382 putative transporter; Provisional	Back alignment and domain information

>PRK09528 lacY galactoside permease; Reviewed	Back alignment and domain information

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]	Back alignment and domain information

>PRK09705 cynX putative cyanate transporter; Provisional	Back alignment and domain information

>TIGR00902 2A0127 phenyl proprionate permease family protein	Back alignment and domain information

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated	Back alignment and domain information

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins	Back alignment and domain information

>TIGR00898 2A0119 cation transport protein	Back alignment and domain information

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional	Back alignment and domain information

>PRK10406 alpha-ketoglutarate transporter; Provisional	Back alignment and domain information

>PRK15075 citrate-proton symporter; Provisional	Back alignment and domain information

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]	Back alignment and domain information

>TIGR00880 2_A_01_02 Multidrug resistance protein	Back alignment and domain information

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]	Back alignment and domain information

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]	Back alignment and domain information

>PRK11462 putative transporter; Provisional	Back alignment and domain information

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK09669 putative symporter YagG; Provisional	Back alignment and domain information

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter	Back alignment and domain information

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK10133 L-fucose transporter; Provisional	Back alignment and domain information

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK09952 shikimate transporter; Provisional	Back alignment and domain information

>TIGR00882 2A0105 oligosaccharide:H+ symporter	Back alignment and domain information

>TIGR00896 CynX cyanate transporter	Back alignment and domain information

>PF13347 MFS_2: MFS/sugar transport protein	Back alignment and domain information

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]	Back alignment and domain information

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)	Back alignment and domain information

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK10429 melibiose:sodium symporter; Provisional	Back alignment and domain information

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1	Back alignment and domain information

>TIGR00889 2A0110 nucleoside transporter	Back alignment and domain information

>TIGR00788 fbt folate/biopterin transporter	Back alignment and domain information

>TIGR01272 gluP glucose/galactose transporter	Back alignment and domain information

>TIGR00883 2A0106 metabolite-proton symporter	Back alignment and domain information

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []	Back alignment and domain information

>KOG3762 consensus Predicted transporter [General function prediction only]	Back alignment and domain information

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age	Back alignment and domain information

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins	Back alignment and domain information

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon	Back alignment and domain information

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)	Back alignment and domain information

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]	Back alignment and domain information

>PRK09848 glucuronide transporter; Provisional	Back alignment and domain information

>PF03825 Nuc_H_symport: Nucleoside H+ symporter	Back alignment and domain information

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters	Back alignment and domain information

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters	Back alignment and domain information

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions	Back alignment and domain information

>TIGR00769 AAA ADP/ATP carrier protein family	Back alignment and domain information

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>TIGR00769 AAA ADP/ATP carrier protein family	Back alignment and domain information

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)	Back alignment and domain information

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)	Back alignment and domain information

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]	Back alignment and domain information

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins	Back alignment and domain information

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs	Back alignment and domain information

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]	Back alignment and domain information

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions	Back alignment and domain information

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age	Back alignment and domain information

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions	Back alignment and domain information

>PRK10697 DNA-binding transcriptional activator PspC; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		322
4gby_A		491	The Structure Of The Mfs (Major Facilitator Superfa		2e-18

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Back alignment and structure

Iteration: 1

Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 132/292 (45%), Gaps = 49/292 (16%) Query: 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIVS------------WRALALIAA 50 P+YIAE+ P +IRG + +QF I+ G ++Y V ++ WR + Sbjct: 148 PMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASEC 207 Query: 51 VPCLLQVVGLFFIPESPRWLAKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKD 110 +P LL ++ L+ +PESPRWL GK+++ E L+ + G T + + +++ + + Sbjct: 208 IPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT----LATQAVQEIKHSLDHG 263 Query: 111 SKAGIFDLFQRRYAYSLSV---GVGLMVMQPFVGXXXXXXXXXXXXXXXDLSTDIGSISM 167 K G R + + V GV L + Q FVG STDI + Sbjct: 264 RKTG-----GRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQT 318 Query: 168 AIIQASTIWMGLSLTIIAL---------------AFGLQ------DTHLWNEATPVLVYV 206 I+ + L+ T++A+ A G+ T + +A ++ + Sbjct: 319 IIVGV----INLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL 374 Query: 207 GIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTF 258 ++ + AFA+ + V+++EIFP I+G A ++ + +N+ V++TF Sbjct: 375 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTF 426 Database: pdbaa

PyMOL of 4gby

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		322
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 46.4 bits (109), Expect = 8e-06
 Identities = 41/348 (11%), Positives = 86/348 (24%), Gaps = 99/348 (28%)

Query: 22  SQFLIVSGM-----SVMYLVGTIVSWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKE 76
           ++ +++ G+     +   +   +    +  +   +        +F       WL  +   
Sbjct: 150 AKNVLIDGVLGSGKTW--VALDVC--LSYKVQCKMDF-----KIF-------WL-NLKNC 192

Query: 77  KELETTLQCLRGKTADISMESADIRDCTQTFE---KDSKAGIFDLF-QRRYAYSLSVGVG 132
              ET L+ L+     I        D +   +      +A +  L   + Y   L V   
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--- 249

Query: 133 L------MVMQPFVGSAAIAYYASYIIAAADLS-TD-IGSISMAIIQASTIWMGL----S 180
           L           F  S  I      ++       TD + + +   I      M L     
Sbjct: 250 LLNVQNAKAWNAFNLSCKI------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 181 LTIIALAFGLQDTHLWNEAT---PVLV------------------YVGIMGFSIAFALGM 219
            +++      +   L  E     P  +                  +V     +      +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 220 AGLPSVIMAE------IFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIF 273
             L      +      +FP +       L ++                  W       + 
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI------------------WFDVIKSDVM 405

Query: 274 WVICAAAVLFVAFLVPETKGRHSKKFKYQLQSINKFYNRTPHLSKTMH 321
            V+     L    LV     +  K+    + SI             +H
Sbjct: 406 VVVNK---LHKYSLV----EKQPKESTISIPSIYLELKVKLENEYALH 446

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		322
4gc0_A		491	D-xylose-proton symporter; MFS, transport protein;	100.0
1pw4_A		451	Glycerol-3-phosphate transporter; transmembrane, i	99.8
3o7q_A		438	L-fucose-proton symporter; transporter, multi-PASS	99.71
4aps_A		491	DI-OR tripeptide H+ symporter; transport protein,	99.63
2gfp_A		375	EMRD, multidrug resistance protein D; membrane pro	99.56
2xut_A		524	Proton/peptide symporter family protein; transport	99.41
2cfq_A		417	Lactose permease; transport, transport mechanism,	99.39
1pw4_A		451	Glycerol-3-phosphate transporter; transmembrane, i	98.82
3o7q_A		438	L-fucose-proton symporter; transporter, multi-PASS	98.68
2gfp_A		375	EMRD, multidrug resistance protein D; membrane pro	98.5
4aps_A		491	DI-OR tripeptide H+ symporter; transport protein,	98.4
2xut_A		524	Proton/peptide symporter family protein; transport	98.26
4gc0_A		491	D-xylose-proton symporter; MFS, transport protein;	96.95
2cfq_A		417	Lactose permease; transport, transport mechanism,	94.46

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*	Back alignment and structure

Probab=100.00  E-value=2.5e-34  Score=251.82  Aligned_cols=296  Identities=28%  Similarity=0.470  Sum_probs=208.8

Q ss_pred             cceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh------------hhHHHHHHhhHHHHHHHHHhhccCCChHH
Q 042030            2 IPIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV------------SWRALALIAAVPCLLQVVGLFFIPESPRW   69 (322)
Q Consensus         2 ~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~------------~Wr~~f~~~~~~~~i~~~~~~~lpesp~~   69 (322)
                      +++|++|++|+++||+..++.+.++.+|.++++.++...            .||+++.+..+++++.++..+++||||||
T Consensus       147 ~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~  226 (491)
T 4gc0_A          147 SPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRW  226 (491)
T ss_dssp             HHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHH
T ss_pred             HHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHH
Confidence            467899999999999999999999999999998877543            59999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcH
Q 042030           70 LAKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYA  149 (322)
Q Consensus        70 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (322)
                      +..+++.|++++.+++...++...++..+..+...+. +  +.......++   .++.........++++.+.+.+.+|.
T Consensus       227 L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (491)
T 4gc0_A          227 LMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHG-R--KTGGRLLMFG---VGVIVIGVMLSIFQQFVGINVVLYYA  300 (491)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHTTHHHHSC---CTHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhh-h--hhhhHHHHhc---ccHHHHHHHHHHHHHHhhhhHHHhcc
Confidence            9999999999999988766543222222211111111 1  1111122222   23444555666677777889999999


Q ss_pred             HHHHHHcCCCchhHHH---HHHHHH---------------------HHHHHHHHHHHHHHHHHHhccCCCCCCchhHHHH
Q 042030          150 SYIIAAADLSTDIGSI---SMAIIQ---------------------ASTIWMGLSLTIIALAFGLQDTHLWNEATPVLVY  205 (322)
Q Consensus       150 ~~~~~~~g~~~~~~~~---~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (322)
                      |.+.+..+.+......   +.++..                     .+...+.++++.++......       ...+..+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~  373 (491)
T 4gc0_A          301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ-------APGIVAL  373 (491)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT-------CCHHHHH
T ss_pred             hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc-------cchHHHH
Confidence            9999988776542222   111111                     11122222222222222111       2234455


Q ss_pred             HHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-------hhhcchhHHHHHHHH
Q 042030          206 VGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-------WSRTGTFSIFWVICA  278 (322)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~  278 (322)
                      ...+++..+++.++.++.+.+.+|++|++.|+++.|+++.++++++++++.+++.+.+       .+....+++++++++
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~  453 (491)
T 4gc0_A          374 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV  453 (491)
T ss_dssp             HHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            5556667777888889999999999999999999999999999999999999876643       334557888999999


Q ss_pred             HHHHHHHhhccCCCCCChhHHHHHHHhhhhhh
Q 042030          279 AAVLFVAFLVPETKGRHSKKFKYQLQSINKFY  310 (322)
Q Consensus       279 ~~~~~~~~~~~et~~~~~~~~~~~~~~~~~~~  310 (322)
                      ++.++.++++||||+|++||+|+.++++.+..
T Consensus       454 ~~~i~~~~~~PETkg~tLeei~~~f~~~~~~~  485 (491)
T 4gc0_A          454 LAALFMWKFVPETKGKTLEELEALWEPETKKT  485 (491)
T ss_dssp             HHHHHHHHHCCCCTTCCHHHHGGGTC------
T ss_pred             HHHHHHHheecCCCCCCHHHHHHHhCCCCccc
Confidence            99999999999999999999988877555433

PyMOL of 4gc0

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1	Back alignment and structure

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*	Back alignment and structure

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}	Back alignment and structure

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}	Back alignment and structure

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}	Back alignment and structure

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*	Back alignment and structure

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1	Back alignment and structure

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*	Back alignment and structure

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}	Back alignment and structure

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}	Back alignment and structure

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}	Back alignment and structure

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*	Back alignment and structure

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		322
d1pw4a_		447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	0.001

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447	Back information, alignment and structure


class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 36/306 (11%), Positives = 80/306 (26%), Gaps = 8/306 (2%)

Query: 1   MIPIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV------SWRALALIAAVPCL 54
                +     +  RG   +        G  +  L+  +          AL + A    L
Sbjct: 136 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAIL 195

Query: 55  LQVVGLFFIPESPRWLAKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAG 114
           + +     + ++P+       E+           K                  +      
Sbjct: 196 VALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIA 255

Query: 115 IFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAADLSTDIGSISMAIIQAST 174
           I ++F     Y +       + +    +   + +A ++   A +   +    M+      
Sbjct: 256 IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG 315

Query: 175 IWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPIN 234
                 +  + L       +  N A    V +  M        G   L  +   E+ P  
Sbjct: 316 NRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK 375

Query: 235 IKGSAGSLVILLHNCSNWIVTYTF--HFTMEWSRTGTFSIFWVICAAAVLFVAFLVPETK 292
             G+A     L       +       +    +   G F +       AV+ +  ++   K
Sbjct: 376 AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 435

Query: 293 GRHSKK 298
            RH + 
Sbjct: 436 RRHEQL 441

PyMOL of d1pw4a_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		322
d1pw4a_		447	Glycerol-3-phosphate transporter {Escherichia coli	99.8
d1pv7a_		417	Lactose permease {Escherichia coli [TaxId: 562]}	99.47
d1pw4a_		447	Glycerol-3-phosphate transporter {Escherichia coli	98.81
d1pv7a_		417	Lactose permease {Escherichia coli [TaxId: 562]}	97.62

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=7.9e-20  Score=155.58  Aligned_cols=264  Identities=11%  Similarity=0.120  Sum_probs=149.0

Q ss_pred             ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhhHHHHHHHH-HhhccCCChHHHHhcCCH
Q 042030            3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV-----SWRALALIAAVPCLLQVV-GLFFIPESPRWLAKIGKE   76 (322)
Q Consensus         3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~-----~Wr~~f~~~~~~~~i~~~-~~~~lpesp~~l~~~~~~   76 (322)
                      ..+++|++|+++||+..++.+.+..+|..+++.++...     +||+.|++.+++.++..+ .+++++|+|+.......+
T Consensus       138 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (447)
T d1pw4a_         138 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE  217 (447)
T ss_dssp             HHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT
T ss_pred             HHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhh
Confidence            35788999999999999999999999998888766543     799999998888776654 456677777532111111


Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHHc
Q 042030           77 KELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAA  156 (322)
Q Consensus        77 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (322)
                      +.              .+++.++.++..+++....+...+..++++..+.......+    .....+....+.|.++.+.
T Consensus       218 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  279 (447)
T d1pw4a_         218 EY--------------KNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVF----VYLLRYGILDWSPTYLKEV  279 (447)
T ss_dssp             TT--------------CCC-------------CCTHHHHHHTSSCHHHHHHHHHHHH----HHHHHHHHHHHHHHHBTTB
T ss_pred             hh--------------hhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhh----hhhhhhcchhhhhhhcccc
Confidence            10              00000000111111111222234445555444433332222    2223556677778777665


Q ss_pred             -CCCchhHHHHHHHHH---------------------HHHHH-HHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHH
Q 042030          157 -DLSTDIGSISMAIIQ---------------------ASTIW-MGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSI  213 (322)
Q Consensus       157 -g~~~~~~~~~~~~~~---------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (322)
                       +.+....+.......                     ..... ........+.......    .....+...+..++.+ 
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g-  354 (447)
T d1pw4a_         280 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN----PAGNPTVDMICMIVIG-  354 (447)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC----CTTCHHHHHHHHHHHH-
T ss_pred             cccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhc----ccccHHHHHHHHHHHH-
Confidence             777664443333322                     00111 1111111111111111    1122333333333322 


Q ss_pred             HHhhcccchhhhhhccccCccccchhHHHHHHHHHHH-HHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhcc
Q 042030          214 AFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCS-NWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVP  289 (322)
Q Consensus       214 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (322)
                      +...+..+..+.+..|.+|++.|+++.|+.+.+++++ ..++|.+.+.+.+ .++...+.+.+++.+++.++.+.+.+
T Consensus       355 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  432 (447)
T d1pw4a_         355 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI  432 (447)
T ss_dssp             HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2233445566888999999999999999999998885 5668889998888 67677777777777777665555443

PyMOL of d1pw4a_

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}	Back information, alignment and structure