Citrus Sinensis ID: 042044

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQEIAKQQQQQMALENNVREIDPNGYHQRENDGYSSHMPLAFRVQPIQPNLQERI
Secondary Structure (PSIPRED)
ccccccccEEcccccccccccccccccHHHHHHHHHHcccccccEEEEEccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHcccccccccEEEEEccccccHHHcc
Coil and Loop (DISEMBL)
MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATsgkmhdyssapMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRhlkgedvtslnHKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQEIAKQQQQQMALENnvreidpngyhqrendgysshmplafrvqpiqpnlqeri
Flexible Loop (DISEMBL)
mgrgkieikrienlsnrqvtyskrrnglikkakeiaVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRhlkgedvtslNHKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQEIAKQQQQQMALENNVREIDPNGYHQRENDGYSSHMPLAfrvqpiqpnlqeri
Low Complexity Region (SEG)
MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRqqeiakqqqqqMALENNVREIDPNGYHQRENDGYSSHMPLAFRVQPIQPNLQERI
Disordered region (IsUnstruct)
******************VTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQSGKKLWDAKHENLYNEIDRI****************************************************************YLKYVL********************************************************
Disordered Region (DISOPRED)
MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQSGK*LWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQE************************************LAFRVQPIQP******
Disordered Region (DISEMBL)
MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQE*********ALENNVREIDPNGYHQRENDGYSSHMPLAFRVQPIQPNLQERI
Disordered Region (DISPRO)
****KIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQEIAKQQQQQMALENNVREIDPNGYHQRENDGYSSHMPLAFRVQPIQPN*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQSGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDVTSLNHKELMALEDALENGLTGIxxxxxxxxxxxxxxxxxxxxxHNYLKYVLRQQEIAKQQQQQMALENNVREIDPNGYHQRENDGYSSHMPLAFRVQPIQPNLQERI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	218	2.2.26 [Sep-21-2011]
Q03416	209	Floral homeotic protein G	N/A	no	0.958	1.0	0.646	5e-78
Q03488	210	Floral homeotic protein F	N/A	no	0.963	1.0	0.651	1e-77
Q07474	212	Floral homeotic protein P	N/A	no	0.963	0.990	0.65	6e-75
Q03378	215	Floral homeotic protein G	N/A	no	0.967	0.981	0.599	2e-70
P48007	208	Floral homeotic protein P	yes	no	0.917	0.961	0.6	1e-64
Q40702	209	MADS-box transcription fa	yes	no	0.940	0.980	0.536	2e-59
Q40703	215	MADS-box transcription fa	no	no	0.944	0.958	0.520	2e-59
Q9XGJ4	237	MADS-box protein GGM13 OS	N/A	no	0.986	0.907	0.451	4e-45
Q944S9	224	MADS-box transcription fa	no	no	0.954	0.928	0.356	1e-31
Q8VWM8	259	MADS-box protein ZMM17 OS	N/A	no	0.967	0.814	0.329	2e-31

>sp|Q03416|GLOB_TOBAC Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1

 Score =  290 bits (742), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 141/218 (64%), Positives = 180/218 (82%), Gaps = 9/218 (4%)

Query: 1   MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSA 60
           MGRGKIEIKRIEN SNRQVTYSKRRNG++KKAKEI+VLCDA+VS+IIFA+SGKMH++SS 
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSST 60

Query: 61  PMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKELM 120
            + +IL+ YHK +G++LWDAKHENL NEI+++KK+ND+MQI+LRHLKGED+TSLNH+ELM
Sbjct: 61  SLVDILDQYHKLTGRRLWDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELM 120

Query: 121 ALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQEIAKQQQQQMALENN 180
            LEDAL+NGLT IR+KQ++++  MRK  + +EEE + L + LRQ EIA       ++  N
Sbjct: 121 MLEDALDNGLTSIRNKQNDLLRMMRKKTQSMEEEQDQLNWQLRQLEIA-------SMNRN 173

Query: 181 VREIDPNGYHQRENDGYSSHMPLAFRVQPIQPNLQERI 218
           + EI    +HQREN+ Y + MP AFRVQP+QPNLQER 
Sbjct: 174 MGEIGE-VFHQRENE-YQTQMPFAFRVQPMQPNLQERF 209

Transcription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA).
Nicotiana tabacum (taxid: 4097)

>sp|Q03488|FBP1_PETHY Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1

 Score =  289 bits (739), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 142/218 (65%), Positives = 177/218 (81%), Gaps = 8/218 (3%)

Query: 1   MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSA 60
           MGRGKIEIKRIEN SNRQVTYSKRRNG++KKAKEI+VLCDA+VS+IIFA+SGKMH++SS 
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSST 60

Query: 61  PMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKELM 120
            + +IL+ YHK +G++L DAKHENL NEI+++KK+ND+MQI+LRHLKGED+TSLNH+ELM
Sbjct: 61  SLVDILDQYHKLTGRRLLDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELM 120

Query: 121 ALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQEIAKQQQQQMALENN 180
            LEDALENGLT IR+KQ+E++  MRK  + +EEE + L   LRQ EIA        +  N
Sbjct: 121 ILEDALENGLTSIRNKQNEVLRMMRKKTQSMEEEQDQLNCQLRQLEIA-------TMNRN 173

Query: 181 VREIDPNGYHQRENDGYSSHMPLAFRVQPIQPNLQERI 218
           + EI    + QREN  Y +HMP AFRVQP+QPNLQER+
Sbjct: 174 MGEIGE-VFQQRENHDYQNHMPFAFRVQPMQPNLQERL 210

Probable transcription factor.

Petunia hybrida (taxid: 4102)

>sp|Q07474|MADS2_PETHY Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1

 Score =  280 bits (715), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 143/220 (65%), Positives = 170/220 (77%), Gaps = 10/220 (4%)

Query: 1   MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS- 59
           MGRGKIEIKRIEN SNRQVTYSKRRNG+IKKAKEI VLCDAKVSLIIF  SGKMH+Y S 
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSP 60

Query: 60  -APMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKE 118
              + ++L+ Y K SG++LWDAKHENL NEIDRIKKEND+MQ+KLRHLKGED+ SLNHKE
Sbjct: 61  STTLPDMLDGYQKTSGRRLWDAKHENLSNEIDRIKKENDNMQVKLRHLKGEDINSLNHKE 120

Query: 119 LMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQEIAKQQQQQMALE 178
           LM LE+ L NGL+ I  KQSE++  +RKN ++LEEEH  L+Y L Q+E+A       A+ 
Sbjct: 121 LMVLEEGLTNGLSSISAKQSEILRMVRKNDQILEEEHKQLQYALHQKEMA-------AMG 173

Query: 179 NNVREIDPNGYHQRENDGYSSHMPLAFRVQPIQPNLQERI 218
            N+R I+   YHQR+ D     MP A RVQP+QPNL ER+
Sbjct: 174 GNMRMIE-EVYHQRDRDYEYQQMPFALRVQPMQPNLHERM 212

Transcription factor involved in the genetic control of flower development.

Petunia hybrida (taxid: 4102)

>sp|Q03378|GLOB_ANTMA Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1

 Score =  265 bits (677), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 133/222 (59%), Positives = 171/222 (77%), Gaps = 11/222 (4%)

Query: 1   MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS- 59
           MGRGKIEIKRIEN SNRQVTYSKRRNG++KKAKEI+VLCDA VS+IIFA+SGKMH++ S 
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSP 60

Query: 60  -APMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKE 118
              + ++L+ YHK SGK+LWD KHE+L NEI+R+KKENDSMQI+LRHLKGED+T+LN+KE
Sbjct: 61  STTLVDMLDHYHKLSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKE 120

Query: 119 LMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQEIAKQQQQQMALE 178
           LM LEDALENG + +++KQ E +  MRK+ +M+EEE+  L++ LRQ  +         + 
Sbjct: 121 LMVLEDALENGTSALKNKQMEFVRMMRKHNEMVEEENQSLQFKLRQMHLD-------PMN 173

Query: 179 NNVREIDP--NGYHQRENDGYSSHMPLAFRVQPIQPNLQERI 218
           +NV E     + +H +    Y + MP AFRVQP+QPNLQER 
Sbjct: 174 DNVMESQAVYDHHHHQNIADYEAQMPFAFRVQPMQPNLQERF 215

Transcription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA).

Antirrhinum majus (taxid: 4151)

>sp|P48007|PIST_ARATH Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1

 Score =  246 bits (627), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 132/220 (60%), Positives = 160/220 (72%), Gaps = 20/220 (9%)

Query: 1   MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSA 60
           MGRGKIEIKRIEN +NR VT+SKRRNGL+KKAKEI VLCDAKV+LIIFA++GKM DY   
Sbjct: 1   MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCP 60

Query: 61  PM--FEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKE 118
            M    +L+ Y K SGKKLWDAKHENL NEIDRIKKENDS+Q++LRHLKGED+ SLN K 
Sbjct: 61  SMDLGAMLDQYQKLSGKKLWDAKHENLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKN 120

Query: 119 LMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQEIAKQQQQQMALE 178
           LMA+E A+E+GL  +RD Q E++   R+N KM+ EE   L + L        QQQ+MA+ 
Sbjct: 121 LMAVEHAIEHGLDKVRDHQMEILISKRRNEKMMAEEQRQLTFQL--------QQQEMAIA 172

Query: 179 NNVREIDPNGYHQRENDGYSSHMPLAFRVQPIQPNLQERI 218
           +N R     G   R++DG        +RVQPIQPNLQE+I
Sbjct: 173 SNAR-----GMMMRDHDG-----QFGYRVQPIQPNLQEKI 202

Probable transcription factor involved in the genetic control of flower development. Is required for normal development of petals and stamens in the wild-type flower. Forms an heterodimer with APETALA3 that is required for autoregulation of both AP3 and PI genes. AP3/PI heterodimer interacts with APETALA1 or SEPALLATA3 to form a ternary complex that could be responsible for the regulation of the genes involved in the flower development. AP3/PI heterodimer activates the expression of NAP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40702|MADS2_ORYSJ MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1

 Score =  228 bits (582), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 117/218 (53%), Positives = 160/218 (73%), Gaps = 13/218 (5%)

Query: 1   MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS- 59
           MGRGKIEIKRIEN +NRQVT+SKRR+G++KKA+EI+VLCDA+V ++IF+++GK++DY S 
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSP 60

Query: 60  -APMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKE 118
              +  ILE Y   SGK LWD KH++L  EIDRIKKEND+MQI+LRHLKGED+ SL  KE
Sbjct: 61  KTSLSRILEKYQTNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKE 120

Query: 119 LMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQEIAKQQQQQMALE 178
           L+ +E+AL+NG+  + DK  +  ER  +  KMLE+E+  L + L QQ+I        AL 
Sbjct: 121 LIMIEEALDNGIVNVNDKLMDHWERHVRTDKMLEDENKLLAFKLHQQDI--------ALS 172

Query: 179 NNVREIDPNGYHQRENDGYSSHMPLAFRVQPIQPNLQE 216
            ++R+++  GYH   +  +++ MP+ FRVQP  PNLQE
Sbjct: 173 GSMRDLEL-GYHPDRD--FAAQMPITFRVQPSHPNLQE 207

Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q40703|MADS4_ORYSJ MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3

 Score =  228 bits (582), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 116/223 (52%), Positives = 156/223 (69%), Gaps = 17/223 (7%)

Query: 1   MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSA 60
           MGRGKIEIKRIEN +NRQVT+SKRR G++KKA+EI VLCDA+V ++IF+++GK+ DY + 
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTP 60

Query: 61  -------PMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTS 113
                  P+  ILE Y   SGK LWD KH++L  EIDR+KKEND+MQI+LRH+KGED+ S
Sbjct: 61  KTTSVFPPLSRILEKYQTNSGKILWDEKHKSLSAEIDRVKKENDNMQIELRHMKGEDLNS 120

Query: 114 LNHKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQEIAKQQQQ 173
           L  KEL+A+E+AL NG   +RDK  +     ++N KMLE+EH  L + + QQE+      
Sbjct: 121 LQPKELIAIEEALNNGQANLRDKMMDHWRMHKRNEKMLEDEHKMLAFRVHQQEV------ 174

Query: 174 QMALENNVREIDPNGYHQRENDGYSSHMPLAFRVQPIQPNLQE 216
              L   +RE++  GYH  + D +++ MP  FRVQP  PNLQ+
Sbjct: 175 --ELSGGIRELEL-GYHHDDRD-FAASMPFTFRVQPSHPNLQQ 213

Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules and stamens (whorls 2 and 3). May function as an heterodimer with MADS16.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9XGJ4|GGM13_GNEGN MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1

 Score =  181 bits (458), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 102/226 (45%), Positives = 152/226 (67%), Gaps = 11/226 (4%)

Query: 1   MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSA 60
           MGRGKIEIKRIEN +NRQVT+SKRR GL+KKA E++VLCDA++ LIIF++SGK+ +YSSA
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSA 60

Query: 61  --PMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKE 118
              M +I+E Y K SG ++ +  +++LY E+ R+K EN+ +Q  +R + GED+TSL   E
Sbjct: 61  SSSMKKIIERYQKVSGARITEYDNQHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMTE 120

Query: 119 LMALEDALENGLTGIRDKQSEMM----ERMRKNGKMLEEEHNYLKYVLRQQEIAKQQQQQ 174
           L  L   LE+  + +R +++++M    E +R+  ++LE+++++L  +L +Q+ A +  Q+
Sbjct: 121 LHHLGQQLESASSRVRSRKNQLMLQQLENLRRKERILEDQNSHLCRLLAEQQAAVEGVQE 180

Query: 175 MALENNVREIDP-NGYHQRENDG---YSSHMPLAFRVQPIQPNLQE 216
             LE  V    P N      N G      H+P AFR+QP QPNLQE
Sbjct: 181 PLLEFGVFCPPPDNKTAAAANAGPLHLGHHLP-AFRLQPTQPNLQE 225

Probable transcription factor.

Gnetum gnemon (taxid: 3382)

>sp|Q944S9|MAD16_ORYSJ MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2

 Score =  136 bits (342), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/216 (35%), Positives = 123/216 (56%), Gaps = 8/216 (3%)

Query: 1   MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYS-- 58
           MGRGKIEIKRIEN +NRQVTYSKRR G++KKA+E+ VLCDA+V++I+F+++GK H++   
Sbjct: 1   MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSP 60

Query: 59  SAPMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKE 118
           S  +  I + Y +  G  LW  ++EN+   +  +K  N +++ ++R   GED+  L   E
Sbjct: 61  STDIKGIFDRYQQAIGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDE 120

Query: 119 LMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQEIAKQQQQQMALE 178
           L  LE  ++  L  +R ++  ++    +  K  + +H+Y  Y   QQE+  +++      
Sbjct: 121 LRGLEQNVDAALKEVRHRKYHVITTQTETYKK-KVKHSYEAYETLQQELGLREEPAFGFV 179

Query: 179 NNVREIDPNGYHQRENDGYSSHMPLAFRVQPIQPNL 214
           +N                 ++    AFRV P QPNL
Sbjct: 180 DNTGGGW-----DGGAGAGAAADMFAFRVVPSQPNL 210

Probable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as an heterodimer with MADS4.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VWM8|M17_MAIZE MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1

 Score =  135 bits (341), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 139/249 (55%), Gaps = 38/249 (15%)

Query: 1   MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS- 59
           MGRGKIEIKRIEN +NRQVT+SKRR GL+KKA E+AVLCDA+V ++IF+++GKM +Y S 
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSP 60

Query: 60  -APMFEILEAYHKQSGKKLWDAKHE-NLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHK 117
              + E++E Y   +     +  H+  +  E+ R+K E + ++  +R   G+D++SL   
Sbjct: 61  ACSLRELIEQYQHATNSHFEEINHDQQILLEMTRMKNEMEKLETGIRRYTGDDLSSLTLD 120

Query: 118 ELMALEDALENGLTGIRDKQSEM----MERMRKNGKMLEEEHNYLKYVLRQQEIAKQQQQ 173
           ++  LE  LE  ++ +R ++ ++    ++ +R+  ++LE+++ +L  +     I + QQ 
Sbjct: 121 DVSDLEQQLEYSVSKVRARKHQLLNQQLDNLRRKEQILEDQNTFLYRM-----INENQQA 175

Query: 174 QMALENNVREIDP--------------NGYHQRENDGYSSHM------------PLAFRV 207
            +  E  + E+ P                Y+  E+    + +             L FR+
Sbjct: 176 ALTGEVKLGEMAPLAMLQPPPAFAHSATAYYGGESSSSGTALQLMSAAPQLHADDLGFRL 235

Query: 208 QPIQPNLQE 216
           QP QPNLQ+
Sbjct: 236 QPTQPNLQD 244

Probable transcription factor.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
4105097	211	MADS box protein 26 [Cucumis sativus]	0.954	0.985	0.698	3e-81
317106689	211	JMS09K11.9 [Jatropha curcas]	0.958	0.990	0.686	3e-80
12666535	215	Pistillata MADS-box protein [Malus x dom	0.963	0.976	0.686	7e-80
12666533	215	Pistillata MADS-box protein [Malus x dom	0.963	0.976	0.681	2e-79
327420688	211	putative GLO1 [Catharanthus roseus]	0.958	0.990	0.690	9e-79
354683070	211	PISTILLATA [Passiflora edulis]	0.958	0.990	0.677	2e-78
315418856	208	PI [Actinidia chinensis]	0.944	0.990	0.690	2e-78
323482761	209	MADS domain transcription factor [Camell	0.949	0.990	0.672	3e-78
345132120	210	transcription factor MADS2 [Prunus avium	0.954	0.990	0.677	4e-77
42795382	210	MADS-box protein GLO1 [Petunia x hybrida	0.963	1.0	0.655	4e-77

>gi|4105097|gb|AAD02250.1| MADS box protein 26 [Cucumis sativus]

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 153/219 (69%), Positives = 186/219 (84%), Gaps = 11/219 (5%)

Query: 1   MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS- 59
           MGRGKIEIKRIEN SNRQVTYSKRRNG+IKKAKEI VLCDA+VSL+IFA+SGKMH+Y S 
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSP 60

Query: 60  -APMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKE 118
             P+ +IL+ YHKQSGK+LWDAKHENL NE+DR+KKEND+MQI+LRHL+GED+TSLN+KE
Sbjct: 61  STPLVDILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRHLRGEDITSLNYKE 120

Query: 119 LMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQEIAKQQQQQMALE 178
           LMALE+ALENGLTG+R+KQSE M+ MR N +M+EEE+  L Y L Q+E+       +A+ 
Sbjct: 121 LMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQKEM-------VAMG 173

Query: 179 NNVREIDPNGYHQRENDGYSSHMPLAFRVQPIQPNLQER 217
           ++VRE+D  GY+QR  D ++S MP AFRVQPIQPNLQER
Sbjct: 174 DSVREMDI-GYNQRMRD-FNSQMPFAFRVQPIQPNLQER 210

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106689|dbj|BAJ53191.1| JMS09K11.9 [Jatropha curcas]

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 151/220 (68%), Positives = 179/220 (81%), Gaps = 11/220 (5%)

Query: 1   MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS- 59
           MGRGKIEIKRIEN SNRQVTYSKRR G++KKAKEI VLCDA+VSL+IFA+SGKMH+Y S 
Sbjct: 1   MGRGKIEIKRIENTSNRQVTYSKRRAGIMKKAKEITVLCDAQVSLVIFASSGKMHEYCSP 60

Query: 60  -APMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKE 118
              + EIL+ YHK +GK++WDAKHENL NEIDRIKKENDSMQI+LRH+KGED+ SLNHKE
Sbjct: 61  STSLIEILDKYHKHAGKRIWDAKHENLSNEIDRIKKENDSMQIELRHMKGEDIASLNHKE 120

Query: 119 LMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQEIAKQQQQQMALE 178
           LM +E+ALENGL  IRDKQ E ++ M+KN K+LEEE+  L ++L        QQQ+MA+E
Sbjct: 121 LMHIEEALENGLASIRDKQMEYLKMMKKNEKILEEENKRLSFIL--------QQQEMAIE 172

Query: 179 NNVREIDPNGYHQRENDGYSSHMPLAFRVQPIQPNLQERI 218
            NVRE++ N YHQ     YSS MP AFRVQPIQPNLQER+
Sbjct: 173 ENVRELE-NPYHQHRVRDYSSQMPFAFRVQPIQPNLQERM 211

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12666535|emb|CAC28022.1| Pistillata MADS-box protein [Malus x domestica]

 Score =  302 bits (773), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 153/223 (68%), Positives = 183/223 (82%), Gaps = 13/223 (5%)

Query: 1   MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS- 59
           MGRGK+EIKRIEN SNRQVTYSKRRNG+IKKAKEI VLCDAKVSLII+++SGKM +Y S 
Sbjct: 1   MGRGKVEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIYSSSGKMVEYCSP 60

Query: 60  -APMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKE 118
              + EIL+ YH QSGKKLWDAKHENL NE+DR+KK+NDSMQ++LRHLKGED+TSLNH E
Sbjct: 61  STTLTEILDKYHGQSGKKLWDAKHENLSNEVDRVKKDNDSMQVELRHLKGEDITSLNHVE 120

Query: 119 LMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQEIAKQQQQQMALE 178
           LMALE+ALENGLT IRDKQS+ ++ MR NGK LE+E+  L Y L       Q+QQ+M +E
Sbjct: 121 LMALEEALENGLTSIRDKQSKFVDMMRDNGKALEDENKRLTYEL-------QKQQEMKIE 173

Query: 179 NNVREIDPNGYHQRENDGYSSH---MPLAFRVQPIQPNLQERI 218
            NVR ++ NGYHQR+   Y+++   +P AFRVQPIQPNLQERI
Sbjct: 174 ENVRNME-NGYHQRQLGNYNNNQQQIPFAFRVQPIQPNLQERI 215

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12666533|emb|CAC28021.1| Pistillata MADS-box protein [Malus x domestica]

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 152/223 (68%), Positives = 183/223 (82%), Gaps = 13/223 (5%)

Query: 1   MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS- 59
           MGRGK+EIKRIEN SNRQVTYSKRRNG+IKKAKEI VLCDAKVSLII+++SGKM +Y S 
Sbjct: 1   MGRGKVEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIYSSSGKMVEYCSP 60

Query: 60  -APMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKE 118
              + EIL+ YH QSGKKLWDAKHENL NE+DR+KK+NDSMQ++LRHLKGED+TSLNH E
Sbjct: 61  STTLTEILDKYHGQSGKKLWDAKHENLSNEVDRVKKDNDSMQVELRHLKGEDITSLNHVE 120

Query: 119 LMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQEIAKQQQQQMALE 178
           LMALE+ALENGLT IRDKQS+ ++ MR NGK LE+E+  L Y L       Q+QQ+M ++
Sbjct: 121 LMALEEALENGLTSIRDKQSKFVDMMRDNGKALEDENKRLTYEL-------QKQQEMKIK 173

Query: 179 NNVREIDPNGYHQRENDGYSSH---MPLAFRVQPIQPNLQERI 218
            NVR ++ NGYHQR+   Y+++   +P AFRVQPIQPNLQERI
Sbjct: 174 ENVRNME-NGYHQRQLGNYNNNQQQIPFAFRVQPIQPNLQERI 215

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|327420688|gb|AEA76417.1| putative GLO1 [Catharanthus roseus]

 Score =  298 bits (763), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 152/220 (69%), Positives = 178/220 (80%), Gaps = 11/220 (5%)

Query: 1   MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDY--S 58
           MGRGKIEIKRIEN SNRQVTYSKRRNG++KKAKEI VLCDAKVSLIIF TSGKMH+Y   
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEITVLCDAKVSLIIFGTSGKMHEYISP 60

Query: 59  SAPMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKE 118
           S  + ++L+AY K +GKKLWDAKHENL NEIDR+KKENDSMQI+LRHLKGED+TSLNHKE
Sbjct: 61  STNLIDMLDAYQKATGKKLWDAKHENLSNEIDRVKKENDSMQIELRHLKGEDITSLNHKE 120

Query: 119 LMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQEIAKQQQQQMALE 178
           LM LEDALENG++ IRD+QSE+++  RKNG++LEEE+  L Y   QQE+A        ++
Sbjct: 121 LMVLEDALENGISSIRDRQSEIVKIARKNGQILEEENKQLPYFWHQQELAN-------MK 173

Query: 179 NNVREIDPNGYHQRENDGYSSHMPLAFRVQPIQPNLQERI 218
           N V E + + YHQR  D Y S MP AFRVQP+QPNL ERI
Sbjct: 174 NAVEETE-DVYHQRVRD-YQSQMPFAFRVQPMQPNLHERI 211

Source: Catharanthus roseus

Species: Catharanthus roseus

Genus: Catharanthus

Family: Apocynaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|354683070|gb|AER30449.1| PISTILLATA [Passiflora edulis]

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 149/220 (67%), Positives = 178/220 (80%), Gaps = 11/220 (5%)

Query: 1   MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS- 59
           MGRGKIEIKRIEN SNRQVTYSKRRNG+IKKAKEI VLCDAKVSL+IF +SGKMH+Y S 
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLVIFGSSGKMHEYCSP 60

Query: 60  -APMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKE 118
              + ++L+ YHKQSGK+LWDAKHENL NEIDRIKKENDSMQI+LRHLKGED+TSL+HKE
Sbjct: 61  STTLVDLLDKYHKQSGKRLWDAKHENLSNEIDRIKKENDSMQIELRHLKGEDITSLHHKE 120

Query: 119 LMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQEIAKQQQQQMALE 178
           L+ALE ALENGL G+R+KQ +      KN K+LE+E   L ++L        QQQ+MA+E
Sbjct: 121 LLALEKALENGLVGVREKQMDYYRMKEKNNKILEDEGKRLSFIL--------QQQEMAIE 172

Query: 179 NNVREIDPNGYHQRENDGYSSHMPLAFRVQPIQPNLQERI 218
            + RE++ N YHQ++   YSS +P AFRVQPIQPNLQER+
Sbjct: 173 EDAREME-NAYHQQKLREYSSQIPFAFRVQPIQPNLQERM 211

Source: Passiflora edulis

Species: Passiflora edulis

Genus: Passiflora

Family: Passifloraceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315418856|gb|ADU15475.1| PI [Actinidia chinensis]

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 152/220 (69%), Positives = 183/220 (83%), Gaps = 14/220 (6%)

Query: 1   MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS- 59
           MGRGKIEIKRIE+ SNRQVTYSKRRNG++KKAKEI+VLCDAKVSL+IFA+SGKMH+Y S 
Sbjct: 1   MGRGKIEIKRIEHSSNRQVTYSKRRNGILKKAKEISVLCDAKVSLVIFASSGKMHEYCSP 60

Query: 60  -APMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKE 118
              + +IL+ YHKQSGK+LWDAKHENL NE+DRIKKENDSMQI+LRHLKGED+TSL+HKE
Sbjct: 61  STTLVDILDKYHKQSGKRLWDAKHENLSNELDRIKKENDSMQIELRHLKGEDITSLHHKE 120

Query: 119 LMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQEIAKQQQQQMALE 178
           LMALE+ALENGL+GIR+KQ E+ + M+KN KMLE+E+ +L ++L         QQ M +E
Sbjct: 121 LMALEEALENGLSGIREKQMEVFKMMKKNEKMLEDENKHLNFML--------HQQGMTME 172

Query: 179 NNVREIDPNGYHQRENDGYSSHMPLAFRVQPIQPNLQERI 218
           +  RE++ NGYHQR  D Y   MP AF VQPIQPNLQ+RI
Sbjct: 173 S--REME-NGYHQRVRD-YQHQMPFAFHVQPIQPNLQDRI 208

Source: Actinidia chinensis

Species: Actinidia chinensis

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|323482761|gb|ADX86812.1| MADS domain transcription factor [Camellia japonica]

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 148/220 (67%), Positives = 178/220 (80%), Gaps = 13/220 (5%)

Query: 1   MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS- 59
           MGRGKIEIKRIEN SNRQVTYSKRRNG++KKAKEI VLCDA+VSL+IFA+SGKMH+Y S 
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEITVLCDAQVSLVIFASSGKMHEYCSP 60

Query: 60  -APMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKE 118
              + +IL+ YHKQSG++LWDAKHENL NE+DRIKKENDSMQI+LRHLKGED+TSL+HKE
Sbjct: 61  STTLVDILDKYHKQSGERLWDAKHENLSNELDRIKKENDSMQIELRHLKGEDITSLHHKE 120

Query: 119 LMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQEIAKQQQQQMALE 178
           LMA+E+ALENGL  +R+KQ E ++ M KN K LEEE+ +L ++L QQE+  +  ++M   
Sbjct: 121 LMAIEEALENGLGSVREKQMEYIDMMEKNKKTLEEENKHLNFMLHQQEMNMESSREME-- 178

Query: 179 NNVREIDPNGYHQRENDGYSSHMPLAFRVQPIQPNLQERI 218
                   NGYHQR  D + S MP AFRVQPIQPNLQERI
Sbjct: 179 --------NGYHQRVRD-FQSQMPFAFRVQPIQPNLQERI 209

Source: Camellia japonica

Species: Camellia japonica

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345132120|gb|AEN75255.1| transcription factor MADS2 [Prunus avium]

 Score =  293 bits (749), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 149/220 (67%), Positives = 178/220 (80%), Gaps = 12/220 (5%)

Query: 1   MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS- 59
           MGRGKIEIKRIEN SNRQVTYSKRRNG+IKKAKEI VLCDAKVSL+IFA+SGKM +Y S 
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLVIFASSGKMVEYCSP 60

Query: 60  -APMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKE 118
              + +IL+ YH Q+GKKLWDAKHENL NE+DR+KK+NDSMQ++LRHLKGED+TSL HKE
Sbjct: 61  SVTVTDILDKYHGQAGKKLWDAKHENLSNEVDRVKKDNDSMQVELRHLKGEDITSLTHKE 120

Query: 119 LMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQEIAKQQQQQMALE 178
           LMALE+ALENGL   RDKQS+ +  + +NG+ LEEEH  L Y L +QE        M +E
Sbjct: 121 LMALEEALENGLASNRDKQSKFVGMLIENGRALEEEHKRLTYELHKQE--------MKIE 172

Query: 179 NNVREIDPNGYHQRENDGYSSHMPLAFRVQPIQPNLQERI 218
            NVRE++ NGYHQR  + Y++ +P AFRVQPIQPNLQER+
Sbjct: 173 ENVRELE-NGYHQRLGN-YNNQIPFAFRVQPIQPNLQERM 210

Source: Prunus avium

Species: Prunus avium

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42795382|gb|AAS46018.1| MADS-box protein GLO1 [Petunia x hybrida]

 Score =  293 bits (749), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 143/218 (65%), Positives = 178/218 (81%), Gaps = 8/218 (3%)

Query: 1   MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSA 60
           MGRGKIEIKRIEN SNRQVTYSKRRNG++KKAKEI+VLCDA+VS+IIFA+SGKMH++SS 
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSST 60

Query: 61  PMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKELM 120
            + +IL+ YHK +G++LWDAKHENL NEI+++KK+ND+MQI+LRHLKGED+TSLNH+ELM
Sbjct: 61  SLVDILDQYHKLTGRRLWDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELM 120

Query: 121 ALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQQEIAKQQQQQMALENN 180
            LEDALENGLT IR+KQ+E++  MRK  + +EEE + L   LRQ EIA        +  N
Sbjct: 121 ILEDALENGLTSIRNKQNEVLRMMRKKTQSMEEEQDQLNCQLRQLEIA-------TMNRN 173

Query: 181 VREIDPNGYHQRENDGYSSHMPLAFRVQPIQPNLQERI 218
           + EI    + QREN  Y +HMP AFRVQP+QPNLQER+
Sbjct: 174 MGEIGE-VFQQRENHDYQNHMPFAFRVQPMQPNLQERL 210

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
UNIPROTKB|Q03378	215	GLO "Floral homeotic protein G	0.972	0.986	0.607	1.4e-64
TAIR|locus:2149264	208	PI "PISTILLATA" [Arabidopsis t	0.839	0.879	0.590	8.8e-59
UNIPROTKB|Q9ZS26	197	gglo1 "MADS-box protein, GGLO1	0.876	0.969	0.604	2.2e-57
UNIPROTKB|Q9ATE5	268	FBP24 "MADS-box protein FBP24"	0.743	0.604	0.417	7.1e-34
UNIPROTKB|Q10CQ1	246	MADS14 "MADS-box transcription	0.729	0.646	0.467	6e-32
UNIPROTKB|Q7XUN2	249	MADS17 "MADS-box transcription	0.729	0.638	0.437	1.8e-30
TAIR|locus:2082613	256	AGL18 "AGAMOUS-like 18" [Arabi	0.912	0.777	0.381	4.9e-30
UNIPROTKB|Q6EU39	250	MADS6 "MADS-box transcription	0.733	0.64	0.430	7.9e-30
UNIPROTKB|Q6Q9I2	267	MADS15 "MADS-box transcription	0.729	0.595	0.449	7.9e-30
UNIPROTKB|Q40882	228	fbp11 "Fbp11 protein" [Petunia	0.729	0.697	0.428	1.3e-29

UNIPROTKB|Q03378 GLO "Floral homeotic protein GLOBOSA" [Antirrhinum majus (taxid:4151)]

 Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
 Identities = 133/219 (60%), Positives = 169/219 (77%)

Query:     1 MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS- 59
             MGRGKIEIKRIEN SNRQVTYSKRRNG++KKAKEI+VLCDA VS+IIFA+SGKMH++ S 
Sbjct:     1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSP 60

Query:    60 -APMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKE 118
                + ++L+ YHK SGK+LWD KHE+L NEI+R+KKENDSMQI+LRHLKGED+T+LN+KE
Sbjct:    61 STTLVDMLDHYHKLSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKE 120

Query:   119 LMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRXXXXXXXXXXXMALE 178
             LM LEDALENG + +++KQ E +  MRK+ +M+EEE+  L++ LR           M  E
Sbjct:   121 LMVLEDALENGTSALKNKQMEFVRMMRKHNEMVEEENQSLQFKLRQMHLDPMNDNVM--E 178

Query:   179 NNVREIDPNGYHQRENDGYSSHMPLAFRVQPIQPNLQER 217
             +    +  + +HQ   D Y + MP AFRVQP+QPNLQER
Sbjct:   179 SQA--VYDHHHHQNIAD-YEAQMPFAFRVQPMQPNLQER 214

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2149264 PI "PISTILLATA" [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
 Identities = 117/198 (59%), Positives = 144/198 (72%)

Query:     1 MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYS-- 58
             MGRGKIEIKRIEN +NR VT+SKRRNGL+KKAKEI VLCDAKV+LIIFA++GKM DY   
Sbjct:     1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCP 60

Query:    59 SAPMFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKE 118
             S  +  +L+ Y K SGKKLWDAKHENL NEIDRIKKENDS+Q++LRHLKGED+ SLN K 
Sbjct:    61 SMDLGAMLDQYQKLSGKKLWDAKHENLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKN 120

Query:   119 LMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRXXXXXXXXXXXMALE 178
             LMA+E A+E+GL  +RD Q E++   R+N KM+ EE   L + L+           MA+ 
Sbjct:   121 LMAVEHAIEHGLDKVRDHQMEILISKRRNEKMMAEEQRQLTFQLQQQE--------MAIA 172

Query:   179 NNVREIDPNGYHQRENDG 196
             +N R     G   R++DG
Sbjct:   173 SNAR-----GMMMRDHDG 185

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048481 "ovule development" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q9ZS26 gglo1 "MADS-box protein, GGLO1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 119/197 (60%), Positives = 152/197 (77%)

Query:     1 MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSA 60
             MGRGKIEIKRIEN SNRQVTYSKR+NG+IKKAKEI VLCDA VSL+I+ +SGKM++Y S 
Sbjct:     1 MGRGKIEIKRIENTSNRQVTYSKRKNGIIKKAKEITVLCDANVSLVIYGSSGKMYEYCSP 60

Query:    61 P--MFEILEAYHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKE 118
                + ++L+ Y + SG KLWDAKHENL NEIDRIKKEN+SMQI+LRHLKGED+TSLN++E
Sbjct:    61 KTNLIDMLDRYQRLSGNKLWDAKHENLQNEIDRIKKENESMQIELRHLKGEDITSLNYEE 120

Query:   119 LMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRXXXXXXXXXXXMALE 178
             L+A EDALENGLT IR+K+ E+ + MRK+ ++LEEE+ +L Y+++            A E
Sbjct:   121 LIAYEDALENGLTNIREKKDEIPKIMRKHEQVLEEENKHLMYLVQQSEMAAMGDYQAAHE 180

Query:   179 N---NVREIDPNGYHQR 192
                  V+ + PN  H+R
Sbjct:   181 PFSFRVQPMQPN-LHER 196

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ATE5 FBP24 "MADS-box protein FBP24" [Petunia x hybrida (taxid:4102)]

 Score = 341 (125.1 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
 Identities = 71/170 (41%), Positives = 117/170 (68%)

Query:     1 MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSA 60
             MGRGKIE+KRIEN ++RQVT+SKRR GL+KK  E++VLCDA++ LIIF++ GK+ +Y S 
Sbjct:     4 MGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQ 63

Query:    61 P--MFEILEAYHKQSGKKL-WDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHK 117
             P  M +I+  Y + +G  L  +     LY+E+ +++++  ++Q+ L+  KG+D++   ++
Sbjct:    64 PHSMSQIISRYLQTTGASLPVEDNRVQLYDEVAKMRRDTLNLQLSLQRYKGDDLSLAQYE 123

Query:   118 ELMALEDALENGLTGIRDKQSEMM----ERMRKNGKMLEEE-HNYLKYVL 162
             EL  LE  LE+ L  IR ++ E+M    E ++K  KMLE+E H+  ++++
Sbjct:   124 ELNELEKQLEHALNKIRARKLELMQQQMENLKKTEKMLEKENHDMYQWLM 173

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q10CQ1 MADS14 "MADS-box transcription factor 14" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 79/169 (46%), Positives = 118/169 (69%)

Query:     1 MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS- 59
             MGRGK+++KRIEN  NRQVT+SKRR+GL+KKA EI+VLCDA+V+LIIF+T GK+++Y++ 
Sbjct:     1 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATD 60

Query:    60 APMFEILEAYHKQS--GKKLWDAKHE---NLYNEIDRIKKENDSMQIKLRHLKGEDVTSL 114
             + M +ILE Y + S   K L  A+ +   N  +E  ++K + +++Q   +HL GED+ SL
Sbjct:    61 SCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESL 120

Query:   115 NHKELMALEDALENGLTGIRDKQSEMM----ERMRKNGKMLEEEHNYLK 159
             N KEL  LE  LEN L  IR ++S++M      +++  K L+EE+  L+
Sbjct:   121 NLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQ 169

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q7XUN2 MADS17 "MADS-box transcription factor 17" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 74/169 (43%), Positives = 114/169 (67%)

Query:     1 MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSA 60
             MGRG++E+KRIEN  NRQVT+SKRRNGL+KKA E++VLCDA+V+LIIF++ GK++++ SA
Sbjct:     1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query:    61 PMFEILEAYH------KQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSL 114
              + + LE Y+      + S   L   +H++ Y E+ R+K + + +Q   RH+ GED+  L
Sbjct:    61 GINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPL 120

Query:   115 NHKELMALEDALENGLTGIRDKQSE-MMER---MRKNGKMLEEEHNYLK 159
             + KEL  LE  LE  L+  R ++++ MME+   +R+  + L E +  LK
Sbjct:   121 SIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLK 169

GO:0010093 "specification of floral organ identity" evidence=IMP

TAIR|locus:2082613 AGL18 "AGAMOUS-like 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 84/220 (38%), Positives = 132/220 (60%)

Query:     1 MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSA 60
             MGRG+IEIK+IEN+++RQVT+SKRRNGLIKKAKE+++LCDA+V+LIIF+++GK++D+SS 
Sbjct:     1 MGRGRIEIKKIENINSRQVTFSKRRNGLIKKAKELSILCDAEVALIIFSSTGKIYDFSSV 60

Query:    61 PMFEILEAY--------HKQSGKK--LWDAKHEN---LYNEIDRIKKENDSMQIKLRHLK 107
              M +IL  Y        HKQ  +   L  A H N   L N+ D +K E + +Q+ +  LK
Sbjct:    61 CMEQILSRYGYTTASTEHKQQREHQLLICASHGNEAVLRND-DSMKGELERLQLAIERLK 119

Query:   108 GEDVTSLNHKELMALEDALENGLTGIRDKQSEMM----ERMR-KNGKMLEEEHNYLKYVL 162
             G+++  ++  +L++LE+ L   L  ++D++++++    ER R +  K LEE     K V 
Sbjct:   120 GKELEGMSFPDLISLENQLNESLHSVKDQKTQILLNQIERSRIQEKKALEENQILRKQVE 179

Query:   163 RXXXXXXXXXXXMALENNVREIDP--NGYHQRENDGYSSH 200
                            +++  E DP  +   + END    H
Sbjct:   180 MLGRGSGPKVLNERPQDSSPEADPESSSSEEDENDNEEHH 219

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0048577 "negative regulation of short-day photoperiodism, flowering" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

UNIPROTKB|Q6EU39 MADS6 "MADS-box transcription factor 6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 74/172 (43%), Positives = 117/172 (68%)

Query:     1 MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSA 60
             MGRG++E+KRIEN  NRQVT+SKRRNGL+KKA E++VLCDA+V+LIIF++ GK++++ SA
Sbjct:     1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query:    61 PMFEILEAY-H-----KQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSL 114
              + + LE Y H     + S   L  ++ ++ Y+E+ ++K + +++Q   RHL GED+  L
Sbjct:    61 GITKTLERYQHCCYNAQDSNNAL--SETQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPL 118

Query:   115 NHKELMALEDALENGLTGIRDKQSEMM----ERMRKNGKMLEEEHNYLKYVL 162
             + KEL  LE  LE  L+  R +++++M    E +R+  + L E +  LK+ L
Sbjct:   119 SVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKL 170

GO:0005515 "protein binding" evidence=IPI

GO:0010022 "meristem determinacy" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

UNIPROTKB|Q6Q9I2 MADS15 "MADS-box transcription factor 15" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 76/169 (44%), Positives = 114/169 (67%)

Query:     1 MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS- 59
             MGRGK+++KRIEN  NRQVT+SKRRNGL+KKA EI+VLCDA+V+ I+F+  GK+++Y++ 
Sbjct:     1 MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATD 60

Query:    60 APMFEILEAYHKQS--GKKLWDAKHE---NLYNEIDRIKKENDSMQIKLRHLKGEDVTSL 114
             + M +ILE Y + S   K L  A+ E   N  +E  ++K + +++Q   +HL GED+ SL
Sbjct:    61 SRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESL 120

Query:   115 NHKELMALEDALENGLTGIRDKQSEMM----ERMRKNGKMLEEEHNYLK 159
             N KEL  LE  LE+ L  I  ++S +M      ++K  + L+EE+  L+
Sbjct:   121 NLKELQQLEQQLESSLKHIISRKSHLMLESISELQKKERSLQEENKALQ 169

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q40882 fbp11 "Fbp11 protein" [Petunia x hybrida (taxid:4102)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 72/168 (42%), Positives = 113/168 (67%)

Query:     1 MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSA 60
             MGRGKIEIKRIEN +NRQVT+ KRRNGL+KKA E++VLCDA+++LI+F+T G++++Y++ 
Sbjct:     1 MGRGKIEIKRIENNTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSTRGRVYEYANN 60

Query:    61 PMFEILEAYHKQSGKKLWDAKHENL----YN-EIDRIKKENDSMQIKLRHLKGEDVTSLN 115
              +   +E Y K + +       + L    Y  E  +++++   +Q   RHL GE +++LN
Sbjct:    61 NIKGTIERYKKATAETSNACTTQELNAQFYQQESKKLRQQIQLLQNTNRHLVGEGLSALN 120

Query:   116 HKELMALEDALENGLTGIRDKQSEMM----ERMRKNGKMLEEEHNYLK 159
              +EL  LE+ LE G+T IR K+ EM+    E ++K    LE+E+ +L+
Sbjct:   121 VRELKQLENRLERGITRIRSKKHEMILAETENLQKREIQLEQENTFLR 168

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q03488	FBP1_PETHY	No assigned EC number	0.6513	0.9633	1.0	N/A	no
Q03378	GLOB_ANTMA	No assigned EC number	0.5990	0.9678	0.9813	N/A	no
Q40702	MADS2_ORYSJ	No assigned EC number	0.5366	0.9403	0.9808	yes	no
Q03416	GLOB_TOBAC	No assigned EC number	0.6467	0.9587	1.0	N/A	no
Q07474	MADS2_PETHY	No assigned EC number	0.65	0.9633	0.9905	N/A	no
P48007	PIST_ARATH	No assigned EC number	0.6	0.9174	0.9615	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	218
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	1e-38
smart00432	59	smart00432, MADS, MADS domain	3e-31
pfam01486	100	pfam01486, K-box, K-box region	2e-28
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	4e-28
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	6e-23
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	1e-21
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	9e-07
PRK10116	142	PRK10116, PRK10116, universal stress protein UspC;	0.001

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  128 bits (323), Expect = 1e-38
 Identities = 52/77 (67%), Positives = 67/77 (87%)

Query: 2  GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAP 61
          GRGKIEIKRIEN +NRQVT+SKRRNGL+KKA E++VLCDA+V+LIIF++SGK++++SS  
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS 60

Query: 62 MFEILEAYHKQSGKKLW 78
          M +I+E Y K SG  LW
Sbjct: 61 MEKIIERYQKTSGSSLW 77

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score =  108 bits (272), Expect = 3e-31
 Identities = 39/58 (67%), Positives = 53/58 (91%)

Query: 2  GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS 59
          GR KIEIKRIEN +NRQVT+SKRRNGL KKA E++VLCDA+V+LI+F+ +GK+++++S
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFAS 58

Length = 59

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score =  102 bits (257), Expect = 2e-28
 Identities = 42/95 (44%), Positives = 65/95 (68%), Gaps = 4/95 (4%)

Query: 69  YHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKELMALEDALEN 128
           Y K SG  LW++K+ENL  E  ++KK+N+++Q + RHL GED+ SL+ KEL  LE  LEN
Sbjct: 1   YQKLSGNDLWESKYENLQQEAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQLEN 60

Query: 129 GLTGIRDKQSEMM----ERMRKNGKMLEEEHNYLK 159
           GL  IR +++E++    E ++K  + L+EE+  L+
Sbjct: 61  GLKHIRSRKNELLLNQIEELQKKERELQEENRNLR 95

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score =  100 bits (251), Expect = 4e-28
 Identities = 39/58 (67%), Positives = 53/58 (91%)

Query: 2  GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS 59
          GRGKIEIKRIEN ++RQVT+SKRRNGL KKA E++VLCDA+V++I+F+ SGK++++ S
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWS 58

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 87.7 bits (218), Expect = 6e-23
 Identities = 33/73 (45%), Positives = 51/73 (69%), Gaps = 1/73 (1%)

Query: 2  GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHD-YSSA 60
          GR KI+IKRIEN   R VT+SKRR GL KKA E++ LC A+V++I+++ SGK++  + S+
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Query: 61 PMFEILEAYHKQS 73
           +  ++  +   S
Sbjct: 61 EVEGVISRFEVLS 73

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 84.0 bits (208), Expect = 1e-21
 Identities = 35/51 (68%), Positives = 48/51 (94%)

Query: 9  KRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS 59
          KRIEN SNRQVT+SKRRNG+ KKA E++VLCDA+V++IIF+++GK+++YSS
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEYSS 51

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 48.1 bits (114), Expect = 9e-07
 Identities = 22/61 (36%), Positives = 39/61 (63%)

Query: 1   MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSA 60
           +   KI I  I N + R VT+SKR++G+ KKA E++VL   +V L++ + +G +H +++ 
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP 140

Query: 61  P 61
            
Sbjct: 141 K 141

Length = 412

>gnl|CDD|182248 PRK10116, PRK10116, universal stress protein UspC; Provisional

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 28 LIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEA 68
          L+ KA  IA   + K+SLI  A+  +M++  +APM E L +
Sbjct: 19 LLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRS 59

Length = 142

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	100.0
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.96
smart00432	59	MADS MADS domain.	99.96
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.95
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.93
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.82
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.78
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.46
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	86.13
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	84.92
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	83.2

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=2.1e-37  Score=256.26  Aligned_cols=141  Identities=40%  Similarity=0.637  Sum_probs=116.7

Q ss_pred             CCcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCch--HHHHHHHHhhhcccccc
Q 042044            1 MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAP--MFEILEAYHKQSGKKLW   78 (218)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~--~~~il~RY~~~~~~~~~   78 (218)
                      ||||||+|++|+|.++|||||+|||+||||||+||||||||+||||||||+|++|+||+++  +..|++||...+.....
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999976  99999999876543211


Q ss_pred             c---ccc----------------------chhhhHHHHhHhHhhhhhh---hhhhccCCCCCCCCH-HHHHHHHHHHHHh
Q 042044           79 D---AKH----------------------ENLYNEIDRIKKENDSMQI---KLRHLKGEDVTSLNH-KELMALEDALENG  129 (218)
Q Consensus        79 ~---~~~----------------------e~l~~el~kLkke~~~L~~---~lR~l~GedL~~Ls~-~EL~~LE~~Le~~  129 (218)
                      .   ...                      .........++...+.+..   ..+++.|++|.+++. .+|..++.+|+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~  160 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS  160 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence            0   000                      0122333444555555543   377899999999999 9999999999999


Q ss_pred             hHhHHHHHHHHH
Q 042044          130 LTGIRDKQSEMM  141 (218)
Q Consensus       130 L~~VR~RK~~ll  141 (218)
                      +..+|..+...+
T Consensus       161 ~~~~~~~~~~~~  172 (195)
T KOG0014|consen  161 LHNSRSSKSKPL  172 (195)
T ss_pred             hcCCCCCCCcCC
Confidence            999999887766

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=100.00  E-value=4e-34  Score=204.50  Aligned_cols=77  Identities=68%  Similarity=1.090  Sum_probs=74.0

Q ss_pred             CcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCchHHHHHHHHhhhcccccc
Q 042044            2 GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQSGKKLW   78 (218)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~~~~il~RY~~~~~~~~~   78 (218)
                      ||+||+|++|||+.+|+|||+||++||||||+||||||||+||+|||||+|++|+|++.++++||+||++.++.++|
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~~~~~   77 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSGSSLW   77 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhccccccC
Confidence            89999999999999999999999999999999999999999999999999999999984499999999999988776

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.96  E-value=1.4e-30  Score=188.69  Aligned_cols=73  Identities=44%  Similarity=0.727  Sum_probs=70.0

Q ss_pred             CcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCch-HHHHHHHHhhhcc
Q 042044            2 GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAP-MFEILEAYHKQSG   74 (218)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~-~~~il~RY~~~~~   74 (218)
                      ||+||+|++|+|..+|+|||+||+.||+|||+||||||||+||+|||||+|+.+.||+++ +..++++|...+.
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~   74 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSA   74 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCH
Confidence            899999999999999999999999999999999999999999999999999999999977 9999999987654

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.96  E-value=1.9e-30  Score=175.85  Aligned_cols=58  Identities=67%  Similarity=1.074  Sum_probs=57.5

Q ss_pred             CcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCC
Q 042044            2 GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS   59 (218)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s   59 (218)
                      ||+||+|++|+|+.+|++||+||+.||+|||+||||||||+||+|||||+|+++.||+
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~   58 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFAS   58 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccC
Confidence            8999999999999999999999999999999999999999999999999999999998

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.95  E-value=1.5e-29  Score=171.58  Aligned_cols=58  Identities=67%  Similarity=1.064  Sum_probs=57.4

Q ss_pred             CcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCC
Q 042044            2 GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS   59 (218)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s   59 (218)
                      ||+||+|++|+|..+|++||+||+.||+|||+||||||||+||+|||||+|+++.||+
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~   58 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWS   58 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccC
Confidence            8999999999999999999999999999999999999999999999999999999998

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.93  E-value=1.3e-27  Score=157.12  Aligned_cols=51  Identities=53%  Similarity=0.896  Sum_probs=47.0

Q ss_pred             EEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCC
Q 042044            9 KRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS   59 (218)
Q Consensus         9 k~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s   59 (218)
                      |+|+|.+.|++||+||+.||+|||.|||+||||+||+|||||+|++|.|+|
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            689999999999999999999999999999999999999999999999986

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.82  E-value=4.9e-20  Score=137.90  Aligned_cols=95  Identities=46%  Similarity=0.794  Sum_probs=91.6

Q ss_pred             HhhhccccccccccchhhhHHHHhHhHhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHH----HHH
Q 042044           69 YHKQSGKKLWDAKHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKELMALEDALENGLTGIRDKQSEMM----ERM  144 (218)
Q Consensus        69 Y~~~~~~~~~~~~~e~l~~el~kLkke~~~L~~~lR~l~GedL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll----~~l  144 (218)
                      |+++++.+.|+..++.+..++.+|+.+++.|+..+|+++|+||++||++||..||++|+.||.+||+||.++|    +++
T Consensus         1 Y~~~~~~~~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l   80 (100)
T PF01486_consen    1 YQKQSGTDLWDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEEL   80 (100)
T ss_pred             CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999999999999999999999999999999999999999999999999999999999998    789


Q ss_pred             HHhHHHHHHHHHHHHHHHH
Q 042044          145 RKNGKMLEEEHNYLKYVLR  163 (218)
Q Consensus       145 kkk~~~l~een~~L~~~~~  163 (218)
                      ++|++.|.++|..|+.++.
T Consensus        81 ~~ke~~l~~en~~L~~~~~   99 (100)
T PF01486_consen   81 KKKERELEEENNQLRQKIE   99 (100)
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            9999999999999997764

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.78  E-value=2.8e-20  Score=159.97  Aligned_cols=64  Identities=36%  Similarity=0.635  Sum_probs=60.2

Q ss_pred             CcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCch-HHHHH
Q 042044            2 GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAP-MFEIL   66 (218)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~-~~~il   66 (218)
                      ||.||+|++|||+..|.|||||||.||||||+|||||.|.+|-|+|.|.+|-+|.|++ | ++.||
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaT-pKLep~i  127 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT-PKLEPMI  127 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecc-ccccccc
Confidence            6999999999999999999999999999999999999999999999999999999999 6 44444

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.46  E-value=2.1e-14  Score=128.83  Aligned_cols=66  Identities=33%  Similarity=0.563  Sum_probs=61.6

Q ss_pred             CCcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCchHHHHH
Q 042044            1 MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEIL   66 (218)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~~~~il   66 (218)
                      |||+||.|..|+|+++|.|||+||+.||+|||+||+||.|.+|.|+|.|.+|+++.|++.+.+.|+
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~  146 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVV  146 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcccccc
Confidence            789999999999999999999999999999999999999999999999999999999994444444

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=86.13  E-value=0.16  Score=27.83  Aligned_cols=15  Identities=20%  Similarity=0.532  Sum_probs=11.8

Q ss_pred             ceeeeeeecCCCCcc
Q 042044           42 KVSLIIFATSGKMHD   56 (218)
Q Consensus        42 ~v~liifs~~gk~~~   56 (218)
                      |-++.+|||.|+++.
T Consensus         2 D~~~t~FSp~Grl~Q   16 (23)
T PF10584_consen    2 DRSITTFSPDGRLFQ   16 (23)
T ss_dssp             SSSTTSBBTTSSBHH
T ss_pred             CCCceeECCCCeEEe
Confidence            345679999999975

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=84.92  E-value=1.6  Score=29.53  Aligned_cols=32  Identities=28%  Similarity=0.334  Sum_probs=27.2

Q ss_pred             hccCCCCCCCCHHHHHHHHHHHHHhhHhHHHH
Q 042044          105 HLKGEDVTSLNHKELMALEDALENGLTGIRDK  136 (218)
Q Consensus       105 ~l~GedL~~Ls~~EL~~LE~~Le~~L~~VR~R  136 (218)
                      +..|+||+.||++||..--..|+.-+.+++.-
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~   43 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLEAA   43 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999998888888877777654

The function of this family is unknown.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=83.20  E-value=12  Score=26.24  Aligned_cols=47  Identities=26%  Similarity=0.309  Sum_probs=31.6

Q ss_pred             CCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 042044          114 LNHKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYV  161 (218)
Q Consensus       114 Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~  161 (218)
                      +|++.+..||..+..++..|..=++++ +.|+.+...|.++|..|...
T Consensus         1 M~~E~l~~LE~ki~~aveti~~Lq~e~-eeLke~n~~L~~e~~~L~~e   47 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETIALLQMEN-EELKEKNNELKEENEELKEE   47 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHH
Confidence            478899999999999999998776665 44555544444555554433

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	218
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		1e-14
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		2e-14
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		2e-14
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		8e-14
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		1e-13
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		6e-13
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		6e-10
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		3e-05
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		3e-05

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 53/73 (72%)
Query: 1  MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSA 60
          MGR KI+I RI +  NRQVT++KR+ GL+KKA E++VLCD +++LIIF ++ ++  Y+S 
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
Query: 61 PMFEILEAYHKQS 73
           M  +L  Y + S
Sbjct: 61 DMDRVLLKYTEYS 73

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 51/68 (75%)
Query: 2  GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAP 61
          GR KI+I RI +  NRQVT++KR+ GL+KKA E++VLCD +++LIIF +S K+  Y+S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 62 MFEILEAY 69
          M ++L  Y
Sbjct: 61 MDKVLLKY 68

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 51/68 (75%)
Query: 2  GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAP 61
          GR KI+I RI +  NRQVT++KR+ GL+KKA E++VLCD +++LIIF +S K+  Y+S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 62 MFEILEAY 69
          M ++L  Y
Sbjct: 61 MDKVLLKY 68

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 52/72 (72%)
Query: 2  GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAP 61
          GR KI+I RI +  NRQVT++KR+ GL+KKA E++VLCD +++LIIF ++ ++  Y+S  
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTD 60
Query: 62 MFEILEAYHKQS 73
          M  +L  Y + S
Sbjct: 61 MDRVLLKYTEYS 72

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 51/68 (75%)
Query: 2  GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAP 61
          GR KI+I RI +  NRQVT++KR+ GL+KKA E++VL DA+++LIIF +S K+  Y+S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYASTD 60
Query: 62 MFEILEAY 69
          M ++L  Y
Sbjct: 61 MDKVLLKY 68

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 51/68 (75%)
Query: 2  GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAP 61
          GR KI+I RI +  NRQVT++KR+ GL+KKA E++VLCD +++LIIF +S K+  Y+S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 62 MFEILEAY 69
          M ++L  Y
Sbjct: 61 MDKVLLKY 68

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 3  RGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPM 62
          R KIEIK IEN + R VT+SKR++G++KKA E++VL   +V L++ + +G ++ +S+ P 
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST-PK 76
Query: 63 FEILEAYHKQSGKKLWDA 80
          FE +    +Q G+ L  A
Sbjct: 77 FEPI--VTQQEGRNLIQA 92

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 40/58 (68%)
Query: 2  GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS 59
          GR KI+++ I+N   R  T+SKR+ G++KKA E++ L   +V L++ + +G ++ +++
Sbjct: 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 67

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 40/58 (68%)
Query: 2  GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSS 59
          GR KI+++ I+N   R  T+SKR+ G++KKA E++ L   +V L++ + +G ++ +++
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	218
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	6e-36
1egw_A	77	MADS box transcription enhancer factor 2, polypept	6e-36
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	1e-35
1hbx_A	92	SRF, serum response factor; gene regulation, trans	3e-34
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	5e-33
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score =  121 bits (304), Expect = 6e-36
 Identities = 35/84 (41%), Positives = 55/84 (65%)

Query: 2  GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAP 61
          GR KI+I RI +  NRQVT++KR+ GL+KKA E++VLCD +++LIIF +S K+  Y+S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 MFEILEAYHKQSGKKLWDAKHENL 85
          M ++L  Y + +         + +
Sbjct: 61 MDKVLLKYTEYNEPHESRTNSDIV 84

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score =  120 bits (303), Expect = 6e-36
 Identities = 35/73 (47%), Positives = 53/73 (72%)

Query: 2  GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAP 61
          GR KI+I RI +  NRQVT++KR+ GL+KKA E++VLCD +++LIIF +S K+  Y+S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 MFEILEAYHKQSG 74
          M ++L  Y + + 
Sbjct: 61 MDKVLLKYTEYNE 73

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  120 bits (303), Expect = 1e-35
 Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 1   MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSA 60
             R KIEIK IEN + R VT+SKR++G++KKA E++VL   +V L++ + +G ++ +S+ 
Sbjct: 16  KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75

Query: 61  PMFEILEAYHKQSGKKLWDAKHENLYNE 88
               I+     ++   L  A      +E
Sbjct: 76  KFEPIVTQQEGRN---LIQACLNAPDDE 100

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  116 bits (292), Expect = 3e-34
 Identities = 20/73 (27%), Positives = 46/73 (63%)

Query: 1  MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSA 60
           GR KI+++ I+N   R  T+SKR+ G++KKA E++ L   +V L++ + +G ++ +++ 
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 69

Query: 61 PMFEILEAYHKQS 73
           +  ++ +   ++
Sbjct: 70 KLQPMITSETGKA 82

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  114 bits (286), Expect = 5e-33
 Identities = 20/73 (27%), Positives = 46/73 (63%)

Query: 1  MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSA 60
           GR KI+++ I+N   R  T+SKR+ G++KKA E++ L   +V L++ + +G ++ +++ 
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 68

Query: 61 PMFEILEAYHKQS 73
           +  ++ +   ++
Sbjct: 69 KLQPMITSETGKA 81

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 9e-04
 Identities = 23/149 (15%), Positives = 49/149 (32%), Gaps = 28/149 (18%)

Query: 72  QSGKKLWDA-KHENLYNEIDRIKKENDSMQIKLRHLKGEDVTSLNHKELMAL-EDAL--E 127
           + G   WD  KH N         K    ++  L  L+  +   +    L      A    
Sbjct: 338 RDGLATWDNWKHVN-------CDKLTTIIESSLNVLEPAEYRKM-FDRLSVFPPSAHIPT 389

Query: 128 NGLT-----GIRDKQSEMMERMRKNGKMLEEEHNYLKYVL--RQQEIAKQQQQQMALENN 180
             L+      I+     ++ ++ K   ++E++       +     E+  + + + AL  +
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYS-LVEKQPKESTISIPSIYLELKVKLENEYALHRS 448

Query: 181 V-------REIDPNGYHQRENDGYS-SHM 201
           +       +  D +       D Y  SH+
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	218
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	83.59
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	81.4
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	81.37
1j1d_C	133	Troponin I, TNI; THIN filament, muscle regulation,	80.89
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	80.47

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=3.4e-39  Score=228.66  Aligned_cols=73  Identities=48%  Similarity=0.775  Sum_probs=69.1

Q ss_pred             CcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCchHHHHHHHHhhhcc
Q 042044            2 GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQSG   74 (218)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~~~~il~RY~~~~~   74 (218)
                      |||||+|++|||.++|||||+|||+||||||+|||||||||||||||||+|++|+|+|++|++||+||++.++
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~   73 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE   73 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC--
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccC
Confidence            8999999999999999999999999999999999999999999999999999999998559999999998753

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=2.1e-38  Score=230.10  Aligned_cols=74  Identities=47%  Similarity=0.762  Sum_probs=70.7

Q ss_pred             CcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCchHHHHHHHHhhhccc
Q 042044            2 GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQSGK   75 (218)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~~~~il~RY~~~~~~   75 (218)
                      |||||+|++|||+++|||||||||+||||||+||||||||+||||||||+|++|+|+|++|..||+||++.+..
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~   74 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP   74 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSC
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcc
Confidence            89999999999999999999999999999999999999999999999999999999994499999999987653

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=1.7e-37  Score=229.04  Aligned_cols=78  Identities=38%  Similarity=0.568  Sum_probs=71.6

Q ss_pred             CCcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCchHHHHHHHHhhhcccccccc
Q 042044            1 MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQSGKKLWDA   80 (218)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~~~~il~RY~~~~~~~~~~~   80 (218)
                      |||+||+|++|||.++|+|||+|||+||||||+||||||||+||||||||+|++|+|+|.++..||++|.   |.++|+.
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~---G~~lw~~   92 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQE---GRNLIQA   92 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHH---HHHHHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhh---CCcHHHH
Confidence            8999999999999999999999999999999999999999999999999999999999944999998774   4566765


Q ss_pred             c
Q 042044           81 K   81 (218)
Q Consensus        81 ~   81 (218)
                      .
T Consensus        93 c   93 (100)
T 1mnm_A           93 C   93 (100)
T ss_dssp             H
T ss_pred             h
Confidence            3

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=1.8e-36  Score=220.79  Aligned_cols=77  Identities=30%  Similarity=0.520  Sum_probs=70.4

Q ss_pred             CCcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCchHHHHHHHHhhhcccccccc
Q 042044            1 MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQSGKKLWDA   80 (218)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~~~~il~RY~~~~~~~~~~~   80 (218)
                      |||+||+|++|||.++|+|||+|||+||||||+||||||||+||||||||+|++|+|+|.+|..||++|   +|..+|+.
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~---~Gk~Li~~   86 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE---TGKALIQT   86 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSH---HHHHHHHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhh---cccHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999994599999965   34555543

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=6.8e-36  Score=221.78  Aligned_cols=69  Identities=29%  Similarity=0.509  Sum_probs=66.3

Q ss_pred             CCcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCchHHHHHHHH
Q 042044            1 MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAY   69 (218)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~~~~il~RY   69 (218)
                      |||+||+|++|||.++|+|||+|||+||||||+||||||||+||||||||+|++|+|+|.+|..||+++
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~   77 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE   77 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999995599999864

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=83.59  E-value=3.9  Score=26.06  Aligned_cols=34  Identities=21%  Similarity=0.283  Sum_probs=29.5

Q ss_pred             HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042044          131 TGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQ  164 (218)
Q Consensus       131 ~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~~~  164 (218)
                      ..-|.||...++.|..++..|+.+|..|...+..
T Consensus        14 ~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~   47 (55)
T 1dh3_A           14 RESRRKKKEYVKSLENRVAVLENQNKTLIEELKA   47 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4568889999999999999999999999977753

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=81.40  E-value=4.9  Score=26.20  Aligned_cols=36  Identities=17%  Similarity=0.352  Sum_probs=31.4

Q ss_pred             hhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042044          129 GLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQ  164 (218)
Q Consensus       129 ~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~~~  164 (218)
                      |-.+.|.||.+.+..|..++..|+.+|..|...+..
T Consensus        13 AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~   48 (63)
T 2wt7_A           13 AAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIAN   48 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445678999999999999999999999999988754

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=81.37  E-value=5  Score=26.31  Aligned_cols=37  Identities=11%  Similarity=0.145  Sum_probs=31.7

Q ss_pred             HhhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042044          128 NGLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQ  164 (218)
Q Consensus       128 ~~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~~~  164 (218)
                      .|-.+.|.||.+-+..|..++..|..+|..|...+..
T Consensus        19 eAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~   55 (63)
T 2dgc_A           19 EAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVAR   55 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556788999999999999999999999999977653

>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2

Probab=80.89  E-value=15  Score=27.78  Aligned_cols=45  Identities=16%  Similarity=0.297  Sum_probs=37.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHhHHHHHH
Q 042044          109 EDVTSLNHKELMALEDALENGLTGIRDKQSEMMERMRKNGKMLEE  153 (218)
Q Consensus       109 edL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~lkkk~~~l~e  153 (218)
                      -++++||.++|+.+-..|-..+..+-+-|+.+-...+++...+.+
T Consensus        53 L~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~d   97 (133)
T 1j1d_C           53 LELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIAD   97 (133)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHH
Confidence            389999999999999999999999999999987666665554443

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=80.47  E-value=5.6  Score=25.65  Aligned_cols=36  Identities=14%  Similarity=0.166  Sum_probs=31.4

Q ss_pred             hhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042044          129 GLTGIRDKQSEMMERMRKNGKMLEEEHNYLKYVLRQ  164 (218)
Q Consensus       129 ~L~~VR~RK~~ll~~lkkk~~~l~een~~L~~~~~~  164 (218)
                      +-.+.|.||.+.+..|..++..|+.+|..|...+..
T Consensus        12 AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~   47 (61)
T 1t2k_D           12 AASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTL   47 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445678999999999999999999999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	218
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	4e-31
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	3e-30
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	2e-29

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 4e-31
 Identities = 35/70 (50%), Positives = 52/70 (74%)

Query: 2  GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAP 61
          GR KI+I RI +  NRQVT++KR+ GL+KKA E++VLCD +++LIIF +S K+  Y+S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 MFEILEAYHK 71
          M ++L  Y +
Sbjct: 61 MDKVLLKYTE 70

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (262), Expect = 3e-30
 Identities = 20/73 (27%), Positives = 46/73 (63%)

Query: 1  MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSA 60
           GR KI+++ I+N   R  T+SKR+ G++KKA E++ L   +V L++ + +G ++ +++ 
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 61

Query: 61 PMFEILEAYHKQS 73
           +  ++ +   ++
Sbjct: 62 KLQPMITSETGKA 74

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  103 bits (258), Expect = 2e-29
 Identities = 27/72 (37%), Positives = 47/72 (65%)

Query: 2  GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAP 61
           R KIEIK IEN + R VT+SKR++G++KKA E++VL   +V L++ + +G ++ +S+  
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK 62

Query: 62 MFEILEAYHKQS 73
             I+     ++
Sbjct: 63 FEPIVTQQEGRN 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	218
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-37  Score=215.69  Aligned_cols=70  Identities=50%  Similarity=0.815  Sum_probs=67.8

Q ss_pred             CcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCchHHHHHHHHhh
Q 042044            2 GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHK   71 (218)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~~~~il~RY~~   71 (218)
                      ||+||+|++|||+.+|+|||||||+||||||.||||||||+||||||||+|++|+|+|.++++|++||+.
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~~~~vl~ry~~   70 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTE   70 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999999999449999999976

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-35  Score=210.63  Aligned_cols=72  Identities=28%  Similarity=0.489  Sum_probs=68.6

Q ss_pred             CCcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCchHHHHHHHHhhh
Q 042044            1 MGRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQ   72 (218)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~~~~il~RY~~~   72 (218)
                      +||+||+|++|||+.+|+|||+|||+||||||+||||||||+||||||||+|++|+|+|.++..|+++|+..
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~~~~vi~~~~~~   73 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGK   73 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGGGHHHHSSHHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999994499999999753

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-35  Score=210.73  Aligned_cols=71  Identities=38%  Similarity=0.572  Sum_probs=68.0

Q ss_pred             CcccceeEEeCCCccchhhhhhhhchHHHHHHHHhhhcccceeeeeeecCCCCccCCCchHHHHHHHHhhh
Q 042044            2 GRGKIEIKRIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDYSSAPMFEILEAYHKQ   72 (218)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~v~liifs~~gk~~~~~s~~~~~il~RY~~~   72 (218)
                      ||+||+|++|+|+.+|+|||||||+||||||+||||||||+||||||||+|++|+|+|.++..|++||...
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~v~~vl~r~~~~   73 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGR   73 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCCHHHHHHHHhcc
Confidence            89999999999999999999999999999999999999999999999999999999983399999999754