Citrus Sinensis ID: 042085

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90
Protein Sequence
LTECWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAMLTSLGFTVEEGNILRDYYNASSAPSLGGLTVIYQPQVSKVLG
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHcccccccccccccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHccHEEEEEEccccccccHHHHHHHHHccccHHHHHHHccccHHHHHHHccccccccccccccccccccccccHccc
Coil and Loop (DISEMBL)
LTECWNSlmelkscsnDIVIFFLNsqtdigpdcchaidiitcnywpamltslgftveegNILRdyynassapslggltviyqpqvskvlg
Flexible Loop (DISEMBL)
LTECWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAMLTSLGFTVEEGNILRDYYNAssapslggltviyqpqvskvlg
Low Complexity Region (SEG)
LTECWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAMLTSLGFTVEEGNILRDYYNASSAPSLGGLTVIYQPQVSKVLG
Disordered region (IsUnstruct)
***CWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAMLTSLGFTVEEGNILRDYYNASSAPSLGGLTVIYQ********
Disordered Region (DISOPRED)
LTECWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAMLTSLGFTVEEGNILRDYY******************VS*V**
Disordered Region (DISEMBL)
LTECWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAMLTSLGFTVEEGNILRDYYNASSAPSLGGLTVIYQPQVSKVLG
Disordered Region (DISPRO)
LTECWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAMLTSLGFTVEEGNILRDYYNA**********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
LTECWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAMLTSLGFTVEEGNILRDYYNASSAPSLGGLTVIYQPQVSKVLG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	90	2.2.26 [Sep-21-2011]
Q9T039	127	Egg cell-secreted protein	yes	no	0.811	0.574	0.594	5e-21
Q9SJ24	125	Egg cell-secreted protein	no	no	0.722	0.52	0.630	2e-20
Q9SJ23	125	Egg cell-secreted protein	no	no	0.888	0.64	0.530	3e-20
Q9SRD8	158	Egg cell-secreted protein	no	no	0.688	0.392	0.516	1e-14
Q9FGG1	155	Egg cell-secreted protein	no	no	0.722	0.419	0.452	3e-11

>sp|Q9T039|EC14_ARATH Egg cell-secreted protein 1.4 OS=Arabidopsis thaliana GN=EC1.4 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 47/79 (59%), Positives = 59/79 (74%), Gaps = 6/79 (7%)

Query: 1   LTECWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAMLTSLGFTVEEGN 60
           L ECWN+L ELKSC+N+IV+FFLN +T +G  CC ++DIIT N WPAMLTSLGFT EE N
Sbjct: 45  LMECWNALYELKSCTNEIVLFFLNGETKLGVSCCESVDIITTNCWPAMLTSLGFTPEEAN 104

Query: 61  ILRDY------YNASSAPS 73
           +LR +       ++S APS
Sbjct: 105 VLRGFCQNPNSGDSSPAPS 123

Involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction; mediates the redistribution of the gamete fusogen HAP2/GCS1 to the cell surface after secretion upon sperm arrival.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJ24|EC12_ARATH Egg cell-secreted protein 1.2 OS=Arabidopsis thaliana GN=EC1.2 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 41/65 (63%), Positives = 54/65 (83%)

Query: 1   LTECWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAMLTSLGFTVEEGN 60
           L ECWN+L ELKSC+N+IV+FFLN +T +G DCC A+++IT + WPAMLTSLGFT +E N
Sbjct: 43  LMECWNALYELKSCTNEIVLFFLNGETKLGVDCCQAVEVITTDCWPAMLTSLGFTSDETN 102

Query: 61  ILRDY 65
           +LR +
Sbjct: 103 VLRGF 107

Involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction; mediates the redistribution of the gamete fusogen HAP2/GCS1 to the cell surface after secretion upon sperm arrival.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJ23|EC13_ARATH Egg cell-secreted protein 1.3 OS=Arabidopsis thaliana GN=EC1.3 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 62/83 (74%), Gaps = 3/83 (3%)

Query: 1   LTECWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAMLTSLGFTVEEGN 60
           L +CW++L ELKSC+N+IV+FFLN +T +G  CC+A+D+IT + WPAMLTSLGFT+EE N
Sbjct: 43  LMQCWDALYELKSCTNEIVLFFLNGETKLGYGCCNAVDVITTDCWPAMLTSLGFTLEETN 102

Query: 61  ILRDYYNASSAPSLGGLTVIYQP 83
           +LR +     +P+ GG +    P
Sbjct: 103 VLRGF---CQSPNSGGSSPALSP 122

Involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction; mediates the redistribution of the gamete fusogen HAP2/GCS1 to the cell surface after secretion upon sperm arrival.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRD8|EC11_ARATH Egg cell-secreted protein 1.1 OS=Arabidopsis thaliana GN=EC1.1 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 45/62 (72%)

Query: 4   CWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAMLTSLGFTVEEGNILR 63
           CW+SLM+L+ CS ++++FFLN +T IGP CC AI  I    WP M+  LGFT +EG++L+
Sbjct: 57  CWDSLMQLQHCSGELILFFLNGETYIGPGCCSAIRTIGRKCWPTMIGVLGFTAQEGDMLQ 116

Query: 64  DY 65
            Y
Sbjct: 117 GY 118

Involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction; mediates the redistribution of the gamete fusogen HAP2/GCS1 to the cell surface after secretion upon sperm arrival.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGG1|EC15_ARATH Egg cell-secreted protein 1.5 OS=Arabidopsis thaliana GN=EC1.5 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 8/73 (10%)

Query: 1   LTECWNSLMELKSCSNDIVIFFLNS--------QTDIGPDCCHAIDIITCNYWPAMLTSL 52
           L +CWN+ +ELKSC+++IV FFL+         +  I  DCC AI ++  + W  M TSL
Sbjct: 50  LMDCWNAGLELKSCTDEIVKFFLSQTGTSEPPVKGGIDKDCCGAIGLVVKDCWSVMFTSL 109

Query: 53  GFTVEEGNILRDY 65
           G T  EGN LR+Y
Sbjct: 110 GLTTMEGNNLREY 122


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.137    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,442,211
Number of Sequences: 539616
Number of extensions: 1104240
Number of successful extensions: 2022
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2016
Number of HSP's gapped (non-prelim): 5
length of query: 90
length of database: 191,569,459
effective HSP length: 60
effective length of query: 30
effective length of database: 159,192,499
effective search space: 4775774970
effective search space used: 4775774970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)

Involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction; mediates the redistribution of the gamete fusogen HAP2/GCS1 to the cell surface after secretion upon sperm arrival.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
359482498	128	PREDICTED: uncharacterized protein LOC10	0.911	0.640	0.634	3e-24
296082551	135	unnamed protein product [Vitis vinifera]	0.755	0.503	0.75	2e-23
224060465	146	predicted protein [Populus trichocarpa]	0.944	0.582	0.571	2e-22
255578404	136	conserved hypothetical protein [Ricinus	0.811	0.536	0.643	1e-21
297802032	127	hypothetical protein ARALYDRAFT_490711 [	0.722	0.511	0.676	2e-19
116830619	128	unknown [Arabidopsis thaliana]	0.811	0.570	0.594	2e-19
15235039	127	uncharacterized protein [Arabidopsis tha	0.811	0.574	0.594	2e-19
255578398	135	conserved hypothetical protein [Ricinus	0.722	0.481	0.701	3e-19
297825029	125	hypothetical protein ARALYDRAFT_900604 [	0.722	0.52	0.630	8e-19
116830473	126	unknown [Arabidopsis thaliana]	0.722	0.515	0.630	1e-18

>gi|359482498|ref|XP_002274398.2| PREDICTED: uncharacterized protein LOC100260034 [Vitis vinifera] gi|147772490|emb|CAN65099.1| hypothetical protein VITISV_039724 [Vitis vinifera] gi|297743029|emb|CBI35896.3| unnamed protein product [Vitis vinifera]

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/82 (63%), Positives = 63/82 (76%)

Query: 1   LTECWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAMLTSLGFTVEEGN 60
           L ECWN+LME++ C+N+I++FFLN QT +GP+CC AI IIT N WPAMLTSLGFT EEGN
Sbjct: 43  LVECWNALMEIRQCTNEIILFFLNGQTVLGPECCQAISIITRNCWPAMLTSLGFTAEEGN 102

Query: 61  ILRDYYNASSAPSLGGLTVIYQ 82
           IL+ Y NASS P       +YQ
Sbjct: 103 ILQGYCNASSGPPTPASPPLYQ 124

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082551|emb|CBI21556.3| unnamed protein product [Vitis vinifera]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/68 (75%), Positives = 58/68 (85%)

Query: 1   LTECWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAMLTSLGFTVEEGN 60
           L ECWN+L+ELKSC+N+I++FFLN Q DIGPDCC AIDIIT N WP MLTSLGFT EEGN
Sbjct: 47  LVECWNALVELKSCTNEIILFFLNGQADIGPDCCGAIDIITRNCWPTMLTSLGFTAEEGN 106

Query: 61  ILRDYYNA 68
           ILR Y +A
Sbjct: 107 ILRGYCDA 114

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060465|ref|XP_002300213.1| predicted protein [Populus trichocarpa] gi|222847471|gb|EEE85018.1| predicted protein [Populus trichocarpa]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 65/98 (66%), Gaps = 13/98 (13%)

Query: 1   LTECWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAMLTSLGFTVEEGN 60
           L ECWN+L+E+KSC+N+IV+FF+  Q DIGPDCC AI  IT N WPAM TSLGFT EEGN
Sbjct: 48  LVECWNALVEIKSCTNEIVLFFMTGQADIGPDCCRAIHTITHNCWPAMFTSLGFTDEEGN 107

Query: 61  ILRDYYNAS-----------SAPS--LGGLTVIYQPQV 85
           ILR Y +AS           SAPS    G    YQP +
Sbjct: 108 ILRGYCDASPNSPSIYFSPASAPSPLAAGAPAQYQPML 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578404|ref|XP_002530067.1| conserved hypothetical protein [Ricinus communis] gi|223530420|gb|EEF32307.1| conserved hypothetical protein [Ricinus communis]

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/73 (64%), Positives = 59/73 (80%)

Query: 1   LTECWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAMLTSLGFTVEEGN 60
           L +CWN+L+E+KSCSN+I++FFLN  TDIG DCC +I I T N WPAMLTS+GFT EEGN
Sbjct: 45  LVDCWNALIEIKSCSNEIILFFLNGHTDIGADCCRSIAIFTHNCWPAMLTSIGFTAEEGN 104

Query: 61  ILRDYYNASSAPS 73
           ILR Y + +S+ S
Sbjct: 105 ILRGYCDNASSSS 117

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802032|ref|XP_002868900.1| hypothetical protein ARALYDRAFT_490711 [Arabidopsis lyrata subsp. lyrata] gi|297314736|gb|EFH45159.1| hypothetical protein ARALYDRAFT_490711 [Arabidopsis lyrata subsp. lyrata]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/65 (67%), Positives = 52/65 (80%)

Query: 1   LTECWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAMLTSLGFTVEEGN 60
           L ECWN L ELKSC+N+IV+FFLN +T +G  CC A+DIIT N WPAMLTSLGFT EE N
Sbjct: 45  LMECWNVLYELKSCTNEIVLFFLNGETKLGVSCCEAVDIITTNCWPAMLTSLGFTPEEAN 104

Query: 61  ILRDY 65
           +LR +
Sbjct: 105 VLRGF 109

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116830619|gb|ABK28267.1| unknown [Arabidopsis thaliana]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/79 (59%), Positives = 59/79 (74%), Gaps = 6/79 (7%)

Query: 1   LTECWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAMLTSLGFTVEEGN 60
           L ECWN+L ELKSC+N+IV+FFLN +T +G  CC ++DIIT N WPAMLTSLGFT EE N
Sbjct: 45  LMECWNALYELKSCTNEIVLFFLNGETKLGVSCCESVDIITTNCWPAMLTSLGFTPEEAN 104

Query: 61  ILRDY------YNASSAPS 73
           +LR +       ++S APS
Sbjct: 105 VLRGFCQNPNSGDSSPAPS 123

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235039|ref|NP_195644.1| uncharacterized protein [Arabidopsis thaliana] gi|75213705|sp|Q9T039.1|EC14_ARATH RecName: Full=Egg cell-secreted protein 1.4; Flags: Precursor gi|4914446|emb|CAB43649.1| hypothetical protein [Arabidopsis thaliana] gi|7270918|emb|CAB80597.1| hypothetical protein [Arabidopsis thaliana] gi|91805627|gb|ABE65542.1| hypothetical protein At4g39340 [Arabidopsis thaliana] gi|332661658|gb|AEE87058.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/79 (59%), Positives = 59/79 (74%), Gaps = 6/79 (7%)

Query: 1   LTECWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAMLTSLGFTVEEGN 60
           L ECWN+L ELKSC+N+IV+FFLN +T +G  CC ++DIIT N WPAMLTSLGFT EE N
Sbjct: 45  LMECWNALYELKSCTNEIVLFFLNGETKLGVSCCESVDIITTNCWPAMLTSLGFTPEEAN 104

Query: 61  ILRDY------YNASSAPS 73
           +LR +       ++S APS
Sbjct: 105 VLRGFCQNPNSGDSSPAPS 123

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578398|ref|XP_002530064.1| conserved hypothetical protein [Ricinus communis] gi|223530417|gb|EEF32304.1| conserved hypothetical protein [Ricinus communis]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/67 (70%), Positives = 54/67 (80%), Gaps = 2/67 (2%)

Query: 1   LTECWNSLMELKSCSNDIVIFFLNSQTDI--GPDCCHAIDIITCNYWPAMLTSLGFTVEE 58
           L +CWN+LME+KSCSN+I++FFLN QTDI  G DCC AI II  N WP+MLTSLGFTVEE
Sbjct: 51  LVDCWNALMEIKSCSNEIILFFLNGQTDITIGADCCSAISIIAHNCWPSMLTSLGFTVEE 110

Query: 59  GNILRDY 65
            NIL  Y
Sbjct: 111 VNILNGY 117

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825029|ref|XP_002880397.1| hypothetical protein ARALYDRAFT_900604 [Arabidopsis lyrata subsp. lyrata] gi|297326236|gb|EFH56656.1| hypothetical protein ARALYDRAFT_900604 [Arabidopsis lyrata subsp. lyrata]

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 41/65 (63%), Positives = 54/65 (83%)

Query: 1   LTECWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAMLTSLGFTVEEGN 60
           L ECWN+L ELKSC+N+IV+FFLN +T +G DCC A+++IT + WPAMLTSLGFT +E N
Sbjct: 43  LMECWNALYELKSCTNEIVLFFLNGETKLGVDCCQAVEVITTDCWPAMLTSLGFTSDETN 102

Query: 61  ILRDY 65
           +LR +
Sbjct: 103 VLRAF 107

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116830473|gb|ABK28194.1| unknown [Arabidopsis thaliana]

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/65 (63%), Positives = 54/65 (83%)

Query: 1   LTECWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAMLTSLGFTVEEGN 60
           L ECWN+L ELKSC+N+IV+FFLN +T +G DCC A+++IT + WPAMLTSLGFT +E N
Sbjct: 43  LMECWNALYELKSCTNEIVLFFLNGETKLGVDCCQAVEVITTDCWPAMLTSLGFTSDETN 102

Query: 61  ILRDY 65
           +LR +
Sbjct: 103 VLRGF 107

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
TAIR|locus:2136293	127	EC1.4 "AT4G39340" [Arabidopsis	0.811	0.574	0.621	9e-22
TAIR|locus:2052536	125	EC1.2 "AT2G21740" [Arabidopsis	0.811	0.584	0.578	2.4e-21
TAIR|locus:2052556	125	EC1.3 "AT2G21750" [Arabidopsis	0.888	0.64	0.530	4.9e-21
TAIR|locus:2030136	158	EC1.1 "AT1G76750" [Arabidopsis	0.8	0.455	0.458	1.6e-15
TAIR|locus:2176080	155	EC1.5 "AT5G64720" [Arabidopsis	0.711	0.412	0.486	5e-12

TAIR|locus:2136293 EC1.4 "AT4G39340" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 46/74 (62%), Positives = 57/74 (77%)

Query:     1 LTECWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAMLTSLGFTVEEGN 60
             L ECWN+L ELKSC+N+IV+FFLN +T +G  CC ++DIIT N WPAMLTSLGFT EE N
Sbjct:    45 LMECWNALYELKSCTNEIVLFFLNGETKLGVSCCESVDIITTNCWPAMLTSLGFTPEEAN 104

Query:    61 ILRDY-YNASSAPS 73
             +LR +  N +S  S
Sbjct:   105 VLRGFCQNPNSGDS 118

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IDA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IGI

GO:0031982 "vesicle" evidence=IDA

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IMP

GO:2000008 "regulation of protein localization to cell surface" evidence=IMP

TAIR|locus:2052536 EC1.2 "AT2G21740" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 44/76 (57%), Positives = 59/76 (77%)

Query:     1 LTECWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAMLTSLGFTVEEGN 60
             L ECWN+L ELKSC+N+IV+FFLN +T +G DCC A+++IT + WPAMLTSLGFT +E N
Sbjct:    43 LMECWNALYELKSCTNEIVLFFLNGETKLGVDCCQAVEVITTDCWPAMLTSLGFTSDETN 102

Query:    61 ILRDYYNASSAPSLGG 76
             +LR +     +P+ GG
Sbjct:   103 VLRGF---CQSPNSGG 115

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IDA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IGI

GO:0031982 "vesicle" evidence=IDA

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IMP

GO:2000008 "regulation of protein localization to cell surface" evidence=IMP

TAIR|locus:2052556 EC1.3 "AT2G21750" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 44/83 (53%), Positives = 62/83 (74%)

Query:     1 LTECWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAMLTSLGFTVEEGN 60
             L +CW++L ELKSC+N+IV+FFLN +T +G  CC+A+D+IT + WPAMLTSLGFT+EE N
Sbjct:    43 LMQCWDALYELKSCTNEIVLFFLNGETKLGYGCCNAVDVITTDCWPAMLTSLGFTLEETN 102

Query:    61 ILRDYYNASSAPSLGGLTVIYQP 83
             +LR +     +P+ GG +    P
Sbjct:   103 VLRGF---CQSPNSGGSSPALSP 122

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IDA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IGI

GO:0031982 "vesicle" evidence=IDA

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IMP

GO:2000008 "regulation of protein localization to cell surface" evidence=IMP

TAIR|locus:2030136 EC1.1 "AT1G76750" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 33/72 (45%), Positives = 50/72 (69%)

Query:     4 CWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAMLTSLGFTVEEGNILR 63
             CW+SLM+L+ CS ++++FFLN +T IGP CC AI  I    WP M+  LGFT +EG++L+
Sbjct:    57 CWDSLMQLQHCSGELILFFLNGETYIGPGCCSAIRTIGRKCWPTMIGVLGFTAQEGDMLQ 116

Query:    64 DYYNASSAPSLG 75
              Y + + + + G
Sbjct:   117 GYCDGNDSDNNG 128

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IDA

GO:0005622 "intracellular" evidence=IDA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IGI

GO:0031982 "vesicle" evidence=IDA

GO:0048240 "sperm capacitation" evidence=IDA

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IMP

GO:2000008 "regulation of protein localization to cell surface" evidence=IMP

TAIR|locus:2176080 EC1.5 "AT5G64720" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 36/74 (48%), Positives = 46/74 (62%)

Query:     1 LTECWNSLMELKSCSNDIVIFFLNSQTD---------IGPDCCHAIDIITCNYWPAMLTS 51
             L +CWN+ +ELKSC+++IV FFL SQT          I  DCC AI ++  + W  M TS
Sbjct:    50 LMDCWNAGLELKSCTDEIVKFFL-SQTGTSEPPVKGGIDKDCCGAIGLVVKDCWSVMFTS 108

Query:    52 LGFTVEEGNILRDY 65
             LG T  EGN LR+Y
Sbjct:   109 LGLTTMEGNNLREY 122


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.439    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       90        90   0.00091  102 3  11 22  0.47    29
                                                     29  0.39    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  577 (61 KB)
  Total size of DFA:  124 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.67u 0.08s 9.75t   Elapsed:  00:00:34
  Total cpu time:  9.67u 0.08s 9.75t   Elapsed:  00:00:34
  Start:  Thu May  9 15:01:14 2013   End:  Thu May  9 15:01:48 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005576 "extracellular region" evidence=IDA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IGI

GO:0031982 "vesicle" evidence=IDA

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IMP

GO:2000008 "regulation of protein localization to cell surface" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034113001 SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgun sequence); (128 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	90
pfam05617	67	pfam05617, Prolamin_like, Prolamin-like	1e-10

>gnl|CDD|218659 pfam05617, Prolamin_like, Prolamin-like

 Score = 51.7 bits (124), Expect = 1e-10
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 3  ECWNSLME-LKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAMLTSLGFTVE-EGN 60
          +CW++    +  C ++I      ++ ++GPDCC AI  I  + WPA+             
Sbjct: 1  KCWSACAVKIPGCVDEIFASIFGNKGNLGPDCCQAILKIGDDCWPALFKMFPSLPFFPPK 60

Query: 61 ILRDY 65
          +L++Y
Sbjct: 61 LLKNY 65

Both DUF784 and DUF1278 members are found to be expressed in the plant embryo sac and are regulated by the Myb98 transcription factor. Computational analysis has revealed that they are homologous to the plant prolamin superfamily (Protease inhibitor-seed storage-LTP family, pfam00234). In contrast to the typical prolamin members that have eight conserved Cys residues forming four pairs of disulfide bonds, both DUF784 and DUF1278 domains only contain six conserved Cys residues that may form three pairs of disulfide bonds. These two domains may have potential functions in lipid transfer or protection during plant embryo sac development and reproduction. This family has been merged with the DUF1278 family. Length = 67

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	90
PLN00213	118	predicted protein; Provisional	99.96
PF05617	70	Prolamin_like: Prolamin-like; InterPro: IPR008502	99.84

>PLN00213 predicted protein; Provisional

Probab=99.96  E-value=1.7e-30  Score=181.93  Aligned_cols=72  Identities=21%  Similarity=0.458  Sum_probs=66.9

Q ss_pred             CchhhhhccCCcchHHHHHHHHHhCccc-cCcccchHHHhcccCcchhhhccCCCCcchhhHHHhhhhhcCCCCCCcc
Q 042085            1 LTECWNSLMELKSCSNDIVIFFLNSQTD-IGPDCCHAIDIITCNYWPAMLTSLGFTVEEGNILRDYYNASSAPSLGGL   77 (90)
Q Consensus         1 l~~Cwssl~~v~gC~~EI~~~~l~G~~~-igp~CC~Ai~~i~~~CWP~mfp~~pf~~~e~~~LK~~C~~~~~~sp~~~   77 (90)
                      ++||||||++++||+.||++++++|+++ ||++|||||++++ +|||+| |++||||+   +||++|++++.++++++
T Consensus        45 ~~kCwSSl~~vpGCv~EI~~si~~gkf~~Ig~aCCKAf~~~d-nCwP~~-P~~P~fPp---~LK~~Cs~i~~~~~~~~  117 (118)
T PLN00213         45 ITKCFSSVMDIPGCIAEISQSIFTGKFGNLGPACCKAFLDAD-NCIPKI-PFIPFFPP---MLKEQCSRVAGATPPIP  117 (118)
T ss_pred             HHHHHHHHcCCcchHHHHHHHHHhchhcccchHHHHHHHhhh-ccccCC-cCCCccch---HHHHHHhcccCCCCCCC
Confidence            4799999999999999999999999997 9999999999966 999996 99999999   99999999987776654

>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana

Probab=99.84  E-value=1.2e-21  Score=122.21  Aligned_cols=64  Identities=28%  Similarity=0.601  Sum_probs=56.2

Q ss_pred             hhhhhccCCcchHHHHHHHHHhCcc-ccCcccchHHHhcccCcchh---hhccCCCCcc--hhhHHHhhhh
Q 042085            3 ECWNSLMELKSCSNDIVIFFLNSQT-DIGPDCCHAIDIITCNYWPA---MLTSLGFTVE--EGNILRDYYN   67 (90)
Q Consensus         3 ~Cwssl~~v~gC~~EI~~~~l~G~~-~igp~CC~Ai~~i~~~CWP~---mfp~~pf~~~--e~~~LK~~C~   67 (90)
                      |||++++++++|.+||+.+|++|+. .||++||+||+.++++|||+   |||+.|++++  + ++||++|+
T Consensus         1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C~~~l~~~~~~~p~~~~~~r-~~l~~~C~   70 (70)
T PF05617_consen    1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDCHPALFKMFPFTPFFKPLLR-DLLWNHCS   70 (70)
T ss_pred             ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhHHHHHHHHccCCCCccchhH-HHHHhhcC
Confidence            7999999999999999999999995 49999999999999999999   5555665555  4 49999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00