Citrus Sinensis ID: 042088

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
MAFPNSLVFNVASSVSSIPSNYIRPASNRPNLDGVYLDDCIPQIDLRYLNGSNRSDVVKQTGQACQDYGFFRTENNGIPEEVMDKMLCLSRQFFHFPEDYVRLHCYPLEDYMHEWATNPQSFSLGLERDYPIKALGNHGQHMAINYCPLCPQPELTYGLPCQTDPNVITILLQDDVPGLQVLINGRWVAVNPISRTFTVNIGGQIQVLSNDRYKSVLHRAIVNCNKERISIPTIYCPSPDAMIGPAPHLINDMLILPTTGTLHIASTTRNSGTGDLQLKHVWTCLK
cccccHHHHHHHccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHccccccccccccccHHHHHHccccEEEEEEccccccccccccccccccccccEEEEEccccccEEEEEccEEEEcccccccEEEEcccEEEEEEccccccccEEEEEcccccEEEEEEEEccccccEEEcccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHc
cccccHHHHHHHcccccccHHcccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccccccccccHHHHHHHHcccccEEEEEEEcccccccccccEEEEcccccEEEEEEcccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEEccccccEcccHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHcc
MAFPNSLVFNVASsvssipsnyirpasnrpnldgvylddcipqidlrylngsnrsdvVKQTGQAcqdygffrtenngipeEVMDKMLClsrqffhfpedyvrlhcypledymhewatnpqsfslglerdypikalgnhgqhmainycplcpqpeltyglpcqtdpnvitillqddvpglqvlingrwvavnpisrtftvniggqiQVLSNDRYKSVLHRAIVNCnkerisiptiycpspdamigpaphlindmlilpttgtlhiasttrnsgtgdlqLKHVWTCLK
MAFPNSLVFNVASsvssipsnyirpasnrpnldgVYLDDCIPQIDLRYLNGSNRSDVVKQTGQACQDYGFFRTENNGIPEEVMDKMLCLSRQFFHFPEDYVRLHCYPLEDYMHEWATNPQSFSLGLERDYPIKALGNHGQHMAINYCPLCPQPELTYGLPCQTDPNVITILLQDDVPGLQVLINGRWVAVNPISRTFTVNIGGQIQVLSNDRYKSVLHRAIVNCNKERISIPTIYCPSPDAMIGPAPHLINDMLILPTTGTLHIASTtrnsgtgdlqlkHVWTCLK
MAFPNSLVFNVASSVSSIPSNYIRPASNRPNLDGVYLDDCIPQIDLRYLNGSNRSDVVKQTGQACQDYGFFRTENNGIPEEVMDKMLCLSRQFFHFPEDYVRLHCYPLEDYMHEWATNPQSFSLGLERDYPIKALGNHGQHMAINYCPLCPQPELTYGLPCQTDPNVITILLQDDVPGLQVLINGRWVAVNPISRTFTVNIGGQIQVLSNDRYKSVLHRAIVNCNKERISIPTIYCPSPDAMIGPAPHLINDMLILPTTGTLHIASTTRNSGTGDLQLKHVWTCLK
********F************YI******PNLDGVYLDDCIPQIDLRYLNGSNRSDVVKQTGQACQDYGFFRTENNGIPEEVMDKMLCLSRQFFHFPEDYVRLHCYPLEDYMHEWATNPQSFSLGLERDYPIKALGNHGQHMAINYCPLCPQPELTYGLPCQTDPNVITILLQDDVPGLQVLINGRWVAVNPISRTFTVNIGGQIQVLSNDRYKSVLHRAIVNCNKERISIPTIYCPSPDAMIGPAPHLINDMLILPTTGTLHIASTTRNSGTGDLQLKHVWTC**
***PNSL*********SIP*NYIRPASNRPN***VYLDDCIPQIDLRYLNG****DVV*QTGQACQDYGFFRTENNGIPEEVMDKMLCLSRQFFHFPEDYVRLHCYPLEDYMHEWATNPQSFSLGLERDYPIKALGNHGQHMAINYCPLCPQPELTYGLPCQTDPNVITILLQDDVPGLQVLINGRWVAVNPISRTFTVNIGGQIQVLSNDRYKSVLHRAIVNCNKERISIPTIYCPSPDAMIGPAPHLINDMLILPTTGTLHIASTTRNSGTGDLQLKHVWTCLK
MAFPNSLVFNVASSVSSIPSNYIRPASNRPNLDGVYLDDCIPQIDLRYLNGSNRSDVVKQTGQACQDYGFFRTENNGIPEEVMDKMLCLSRQFFHFPEDYVRLHCYPLEDYMHEWATNPQSFSLGLERDYPIKALGNHGQHMAINYCPLCPQPELTYGLPCQTDPNVITILLQDDVPGLQVLINGRWVAVNPISRTFTVNIGGQIQVLSNDRYKSVLHRAIVNCNKERISIPTIYCPSPDAMIGPAPHLINDMLILPTTGTLHIASTTRNSGTGDLQLKHVWTCLK
*****SLVFN**SSVSSIPSNYIRPASNRPNLDGVYLDDCIPQIDLRYLNGSNRSDVVKQTGQACQDYGFFRTENNGIPEEVMDKMLCLSRQFFHFPEDYVRLHCYPLEDYMHEWATNPQSFSLGLERDYPIKALGNHGQHMAINYCPLCPQPELTYGLPCQTDPNVITILLQDDVPGLQVLINGRWVAVNPISRTFTVNIGGQIQVLSNDRYKSVLHRAIVNCNKERISIPTIYCPSPDAMIGPAPHLINDMLILPTTGTLHIASTTRNSGTGDLQLKHVWTCLK
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAFPNSLVFNVASSVSSIPSNYIRPASNRPNLDGVYLDDCIPQIDLRYLNGSNRSDVVKQTGQACQDYGFFRTENNGIPEEVMDKMLCLSRQFFHFPEDYVRLHCYPLEDYMHEWATNPQSFSLGLERDYPIKALGNHGQHMAINYCPLCPQPELTYGLPCQTDPNVITILLQDDVPGLQVLINGRWVAVNPISRTFTVNIGGQIQVLSNDRYKSVLHRAIVNCNKERISIPTIYCPSPDAMIGPAPHLINDMLILPTTGTLHIASTTRNSGTGDLQLKHVWTCLK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query286 2.2.26 [Sep-21-2011]
Q05963356 Naringenin,2-oxoglutarate N/A no 0.846 0.679 0.297 8e-34
P28038377 Naringenin,2-oxoglutarate N/A no 0.804 0.610 0.291 3e-33
Q05964365 Naringenin,2-oxoglutarate N/A no 0.786 0.616 0.308 3e-33
Q7XZQ7368 Flavanone 3-dioxygenase O N/A no 0.800 0.622 0.304 2e-32
Q9S818358 Naringenin,2-oxoglutarate no no 0.800 0.639 0.305 2e-31
Q07353369 Naringenin,2-oxoglutarate N/A no 0.919 0.712 0.278 2e-31
Q9M547334 Flavonol synthase/flavano N/A no 0.835 0.715 0.298 2e-30
Q9ZWQ9335 Flavonol synthase/flavano N/A no 0.849 0.725 0.272 3e-30
P41090364 Naringenin,2-oxoglutarate no no 0.940 0.739 0.277 3e-30
Q05965357 Naringenin,2-oxoglutarate N/A no 0.800 0.641 0.292 4e-30
>sp|Q05963|FL3H_CALCH Naringenin,2-oxoglutarate 3-dioxygenase OS=Callistephus chinensis GN=FHT PE=2 SV=1 Back     alignment and function desciption
 Score =  144 bits (363), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 141/303 (46%), Gaps = 61/303 (20%)

Query: 1   MAFPNSLVFNVASSVSSIPSNYIRPASNRPNLDGVYLDDCIPQIDLRYLNGSNRSDVVKQ 60
           MA P SL +   S   +    ++R    RP +      + IP I L  ++G  R+++  +
Sbjct: 1   MAAPISLKWEEHSLHEN---KFVRDEDERPKVPYNTFSNEIPVISLAGIDGCRRAEICDE 57

Query: 61  TGQACQDYGFFRTENNGIPEEVMDKMLCLSRQFFHFP----------------------- 97
             +AC+D+G F+  ++G+  +++  M  L+R FFH P                       
Sbjct: 58  IVKACEDWGIFQVVDHGVDTKLLSDMTGLARDFFHLPTQEKLRFDMTGGKKGGFIVSSHL 117

Query: 98  --------EDYVRLHCYPLE--------DYMHEWATNPQSFS-----------------L 124
                    + V    YP++        D  +EW    + +S                 +
Sbjct: 118 QGEAVQDWREIVTYFSYPIKARDYSRWPDKPNEWRAVTEEYSKVLMGLACKLLEVLSEAM 177

Query: 125 GLERDYPIKALGNHGQHMAINYCPLCPQPELTYGLPCQTDPNVITILLQDDVPGLQVLIN 184
           GLE++   KA  +  Q + +NY P CPQP+LT GL   TDP  IT+LLQD V GLQ   +
Sbjct: 178 GLEKEALTKACVDMDQKVVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRD 237

Query: 185 G--RWVAVNPISRTFTVNIGGQIQVLSNDRYKSVLHRAIVNCNKERISIPTIYCPSPDAM 242
           G   W+ V P+   F VN+G     LSN R+K+  H+A+VN +  R+SI T   P+P+A+
Sbjct: 238 GGESWITVKPVEGAFVVNLGDHGHYLSNGRFKNADHQAVVNSSTSRLSIATFQNPAPEAI 297

Query: 243 IGP 245
           + P
Sbjct: 298 VYP 300
Catalyzes the 3-beta-hydroxylation of 2S-flavanones to 2R,3R-dihydroflavonols which are intermediates in the biosynthesis of flavonols, anthocyanidins, catechins and proanthocyanidins in plants.
Callistephus chinensis (taxid: 13379)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 9
>sp|P28038|FL3H_HORVU Naringenin,2-oxoglutarate 3-dioxygenase OS=Hordeum vulgare PE=2 SV=1 Back     alignment and function description
>sp|Q05964|FL3H_DIACA Naringenin,2-oxoglutarate 3-dioxygenase OS=Dianthus caryophyllus GN=FHT PE=2 SV=1 Back     alignment and function description
>sp|Q7XZQ7|FL3H_PETCR Flavanone 3-dioxygenase OS=Petroselinum crispum GN=FHT PE=1 SV=1 Back     alignment and function description
>sp|Q9S818|FL3H_ARATH Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabidopsis thaliana GN=F3H PE=1 SV=1 Back     alignment and function description
>sp|Q07353|FL3H_PETHY Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Petunia hybrida GN=AN3 PE=1 SV=1 Back     alignment and function description
>sp|Q9M547|FLS_EUSER Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma exaltatum subsp. russellianum GN=FLS PE=2 SV=1 Back     alignment and function description
>sp|Q9ZWQ9|FLS_CITUN Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1 Back     alignment and function description
>sp|P41090|FL3H_VITVI Naringenin,2-oxoglutarate 3-dioxygenase OS=Vitis vinifera GN=F3H PE=2 SV=1 Back     alignment and function description
>sp|Q05965|FL3H_MATIN Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Matthiola incana GN=FHT PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
255548069344 1-aminocyclopropane-1-carboxylate oxidas 0.881 0.732 0.558 3e-89
224115488350 predicted protein [Populus trichocarpa] 0.860 0.702 0.555 5e-85
224061517349 predicted protein [Populus trichocarpa] 0.867 0.710 0.545 7e-84
225453648344 PREDICTED: hyoscyamine 6-dioxygenase [Vi 0.877 0.729 0.521 7e-82
225426516348 PREDICTED: naringenin,2-oxoglutarate 3-d 0.860 0.706 0.528 8e-82
356559589345 PREDICTED: flavonol synthase/flavanone 3 0.877 0.727 0.512 2e-81
356520211345 PREDICTED: naringenin,2-oxoglutarate 3-d 0.881 0.730 0.504 1e-80
297742473321 unnamed protein product [Vitis vinifera] 0.860 0.766 0.518 2e-80
225426514348 PREDICTED: naringenin,2-oxoglutarate 3-d 0.860 0.706 0.518 2e-80
297809269351 predicted protein [Arabidopsis lyrata su 0.860 0.700 0.495 7e-80
>gi|255548069|ref|XP_002515091.1| 1-aminocyclopropane-1-carboxylate oxidase, putative [Ricinus communis] gi|223545571|gb|EEF47075.1| 1-aminocyclopropane-1-carboxylate oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  334 bits (856), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 173/310 (55%), Positives = 208/310 (67%), Gaps = 58/310 (18%)

Query: 1   MAFPNSLVFNVASSVSSIPSNYIRPASNRPNLDGVY-LDDC-IPQIDLRYLNGSNRSDVV 58
           MA    L+ ++ S+++S+PSN+IRP S+RPN + V    DC IP IDL+ L+G  RS +V
Sbjct: 1   MAIAKPLLSDLVSTITSVPSNFIRPLSDRPNFNEVIQTSDCSIPLIDLQGLDGPLRSTLV 60

Query: 59  KQTGQACQDYGFFRTENNGIPEEVMDKMLCLSRQFFHFPE-------------------- 98
           K+ GQACQ YGFF+ +N+GIPE+V+DKML +SR+FFH PE                    
Sbjct: 61  KEIGQACQGYGFFQVKNHGIPEDVIDKMLSVSREFFHLPESERMKNYSDDPMMRTRLSTS 120

Query: 99  ------------DYVRLHCYPLEDYMHEWATNPQSF------------------------ 122
                       D++RLHCYPL+DYM EW TNP SF                        
Sbjct: 121 FNVRTEKTSNWRDFLRLHCYPLDDYMQEWPTNPPSFREDVGEYCRNVRDLAVRLLEAISE 180

Query: 123 SLGLERDYPIKALGNHGQHMAINYCPLCPQPELTYGLPCQTDPNVITILLQDDVPGLQVL 182
           SLGLERDY  KAL  H QH+A+NY P CPQPELTYGLP   DPNVITILLQDDVPGLQVL
Sbjct: 181 SLGLERDYINKALDKHAQHLAVNYYPSCPQPELTYGLPVHADPNVITILLQDDVPGLQVL 240

Query: 183 INGRWVAVNPISRTFTVNIGGQIQVLSNDRYKSVLHRAIVNCNKERISIPTIYCPSPDAM 242
            +G+WVAV+P+  TF VNIG QIQV+SNDRYKSVLHRA+VN NKERISIPT YCPSPDA 
Sbjct: 241 KDGKWVAVSPVPHTFIVNIGDQIQVISNDRYKSVLHRAVVNSNKERISIPTFYCPSPDAA 300

Query: 243 IGPAPHLIND 252
           IGPAP L+++
Sbjct: 301 IGPAPPLVDN 310

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224115488|ref|XP_002317046.1| predicted protein [Populus trichocarpa] gi|222860111|gb|EEE97658.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224061517|ref|XP_002300519.1| predicted protein [Populus trichocarpa] gi|222847777|gb|EEE85324.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225453648|ref|XP_002267625.1| PREDICTED: hyoscyamine 6-dioxygenase [Vitis vinifera] gi|296089022|emb|CBI38725.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225426516|ref|XP_002278004.1| PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Vitis vinifera] gi|297742472|emb|CBI34621.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356559589|ref|XP_003548081.1| PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Glycine max] Back     alignment and taxonomy information
>gi|356520211|ref|XP_003528757.1| PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|297742473|emb|CBI34622.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225426514|ref|XP_002278024.1| PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Vitis vinifera] Back     alignment and taxonomy information
>gi|297809269|ref|XP_002872518.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318355|gb|EFH48777.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
TAIR|locus:2127686348 AT4G10490 [Arabidopsis thalian 0.461 0.379 0.651 8.9e-76
TAIR|locus:2127691349 AT4G10500 [Arabidopsis thalian 0.461 0.378 0.651 7.9e-75
TAIR|locus:2153924341 DMR6 "DOWNY MILDEW RESISTANT 6 0.451 0.378 0.584 6.1e-62
TAIR|locus:2040575366 AT2G36690 [Arabidopsis thalian 0.430 0.336 0.430 6.2e-43
TAIR|locus:2042356357 AT2G44800 [Arabidopsis thalian 0.486 0.389 0.390 7.2e-39
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.458 0.353 0.485 1.3e-38
TAIR|locus:2005511377 GA20OX1 [Arabidopsis thaliana 0.458 0.347 0.427 9.2e-36
TAIR|locus:2081008358 F3H "flavanone 3-hydroxylase" 0.437 0.349 0.456 3.9e-35
TAIR|locus:2082058363 JRG21 "jasmonate-regulated gen 0.517 0.407 0.418 3.9e-35
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.479 0.388 0.439 8.1e-35
TAIR|locus:2127686 AT4G10490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 468 (169.8 bits), Expect = 8.9e-76, Sum P(3) = 8.9e-76
 Identities = 86/132 (65%), Positives = 104/132 (78%)

Query:   121 SFSLGLERDYPIKALGNHGQHMAINYCPLCPQPELTYGLPCQTDPNVITILLQDDVPGLQ 180
             S SLGL +D     +G HGQHMAINY P CPQPELTYGLP   D N+IT+LLQD+V GLQ
Sbjct:   178 SESLGLAKDRVSNTIGKHGQHMAINYYPRCPQPELTYGLPGHKDANLITVLLQDEVSGLQ 237

Query:   181 VLINGRWVAVNPISRTFTVNIGGQIQVLSNDRYKSVLHRAIVNCNKERISIPTIYCPSPD 240
             V  +G+W+AVNP+  TF VN+G Q+QV+SN++YKSVLHRA+VN + ERISIPT YCPS D
Sbjct:   238 VFKDGKWIAVNPVPNTFIVNLGDQMQVISNEKYKSVLHRAVVNSDMERISIPTFYCPSED 297

Query:   241 AMIGPAPHLIND 252
             A+I PA  LIN+
Sbjct:   298 AVISPAQELINE 309
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0019748 "secondary metabolic process" evidence=ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2127691 AT4G10500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153924 DMR6 "DOWNY MILDEW RESISTANT 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040575 AT2G36690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042356 AT2G44800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005511 GA20OX1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081008 F3H "flavanone 3-hydroxylase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082058 JRG21 "jasmonate-regulated gene 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00012919
hypothetical protein (349 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 1e-112
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 1e-96
PLN02947374 PLN02947, PLN02947, oxidoreductase 2e-63
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 2e-58
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 1e-51
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 4e-45
PLN02704335 PLN02704, PLN02704, flavonol synthase 2e-42
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 1e-41
PLN02904357 PLN02904, PLN02904, oxidoreductase 2e-41
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 4e-41
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 2e-40
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 3e-37
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 5e-36
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 3e-34
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 2e-32
PLN02216357 PLN02216, PLN02216, protein SRG1 1e-29
PLN02997325 PLN02997, PLN02997, flavonol synthase 2e-29
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 3e-26
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 8e-25
PLN02485329 PLN02485, PLN02485, oxidoreductase 9e-24
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 2e-23
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 8e-23
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 5e-16
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 7e-16
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 4e-15
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 1e-13
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 3e-08
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 5e-08
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 1e-06
PLN02216357 PLN02216, PLN02216, protein SRG1 3e-06
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 3e-05
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 8e-05
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 8e-05
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score =  326 bits (837), Expect = e-112
 Identities = 153/309 (49%), Positives = 193/309 (62%), Gaps = 57/309 (18%)

Query: 1   MAFPNSLVFNVASSVSSIPSNYIRPASNRPNLDGV-YLDDCIPQIDLRYLNGSNRSDVVK 59
            A    LV ++AS V  +PSNY+RP S+RPN+  V    D IP IDLR L+G NR+D++ 
Sbjct: 1   SATSKLLVSDIASVVDHVPSNYVRPVSDRPNMSEVETSGDSIPLIDLRDLHGPNRADIIN 60

Query: 60  QTGQACQDYGFFRTENNGIPEEVMDKMLCLSRQFFHFPE--------------------- 98
           Q   AC  YGFF+ +N+G+PEE + KM+ ++R+FFH  E                     
Sbjct: 61  QFAHACSSYGFFQIKNHGVPEETIKKMMNVAREFFHQSESERVKHYSADTKKTTRLSTSF 120

Query: 99  -----------DYVRLHCYPLEDYMHEWATNPQSF------------------------S 123
                      D++RLHCYP+ED++ EW + P SF                        S
Sbjct: 121 NVSKEKVSNWRDFLRLHCYPIEDFIEEWPSTPISFREVTAEYATSVRALVLTLLEAISES 180

Query: 124 LGLERDYPIKALGNHGQHMAINYCPLCPQPELTYGLPCQTDPNVITILLQDDVPGLQVLI 183
           LGLE+D     LG HGQHMAINY P CPQPELTYGLP   D N+IT+LLQD+V GLQV  
Sbjct: 181 LGLEKDRVSNTLGKHGQHMAINYYPPCPQPELTYGLPGHKDANLITVLLQDEVSGLQVFK 240

Query: 184 NGRWVAVNPISRTFTVNIGGQIQVLSNDRYKSVLHRAIVNCNKERISIPTIYCPSPDAMI 243
           +G+W+AVNPI  TF VN+G Q+QV+SND+YKSVLHRA+VN +KERISIPT YCPS DA+I
Sbjct: 241 DGKWIAVNPIPNTFIVNLGDQMQVISNDKYKSVLHRAVVNTDKERISIPTFYCPSEDAVI 300

Query: 244 GPAPHLIND 252
           GPA  LIN+
Sbjct: 301 GPAQELINE 309

Length = 348
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 286
PLN02216357 protein SRG1 100.0
PLN02947374 oxidoreductase 100.0
PLN02904357 oxidoreductase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02704335 flavonol synthase 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02485329 oxidoreductase 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.93
PLN03176120 flavanone-3-hydroxylase; Provisional 99.79
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.61
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.6
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 91.76
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 91.4
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 88.19
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=6.6e-69  Score=504.90  Aligned_cols=276  Identities=29%  Similarity=0.519  Sum_probs=239.5

Q ss_pred             CchhHHHHhc--cCCCCCCcccCCCCCCCCCCC-CCCCCCCceEeCCCCCCC-ChhHHHHHHHHHHhhcCeEEEEeCCCC
Q 042088            4 PNSLVFNVAS--SVSSIPSNYIRPASNRPNLDG-VYLDDCIPQIDLRYLNGS-NRSDVVKQTGQACQDYGFFRTENNGIP   79 (286)
Q Consensus         4 ~~~~v~~~~~--~~~~ip~~~~~p~~~~~~~~~-~~~~~~iPvIDls~l~~~-~~~~~~~~l~~A~~~~Gff~l~nhGi~   79 (286)
                      +...|+.+++  ++++||++|++|.++++.+.. .....+||+|||+.+.++ .+.+++++|.+||++||||||+||||+
T Consensus        13 ~~~~~~~~~~~~~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~   92 (357)
T PLN02216         13 IVPSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGID   92 (357)
T ss_pred             cchhHHHHHhcCCCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCCC
Confidence            4466899976  689999999999998875311 112358999999998654 345789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCChhhhhhc---------cC----------------------CCccc-cCcCCCCCccc-----
Q 042088           80 EEVMDKMLCLSRQFFHFPEDYVRLH---------CY----------------------PLEDY-MHEWATNPQSF-----  122 (286)
Q Consensus        80 ~~~~~~~~~~~~~fF~Lp~e~~~~~---------~~----------------------p~~~~-~~~WP~~~~~f-----  122 (286)
                      .++++++++.+++||+||.|.|...         |.                      |...+ +|.||+.+++|     
T Consensus        93 ~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~  172 (357)
T PLN02216         93 SSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLE  172 (357)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcccccchhcccchHHHHHHHH
Confidence            9999999999999999999655431         10                      11111 67899877777     


Q ss_pred             -------------------cCCCCCChhHHhhcC-CCccceeeccCCCCCCCcccCcccccCCCcEEEEec-CCCCCeEE
Q 042088          123 -------------------SLGLERDYPIKALGN-HGQHMAINYCPLCPQPELTYGLPCQTDPNVITILLQ-DDVPGLQV  181 (286)
Q Consensus       123 -------------------~Lgl~~~~~~~~~~~-~~~~lrl~~Ypp~~~~~~~~g~~~HtD~~~lTlL~q-d~~~GLqV  181 (286)
                                         +||+++++|.+.+.. ..+.||+||||||+.++..+|+++|||+|+||||+| ++++||||
T Consensus       173 ~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GLQV  252 (357)
T PLN02216        173 TYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQI  252 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCceeE
Confidence                               899999999998875 457899999999999888999999999999999999 57999999


Q ss_pred             EECCeEEEEeecCCeEEEEechhHHHhhCCccccccceEeeCCCCceeeeEEeecCCCCCeEecCCcccccC---CCCCc
Q 042088          182 LINGRWVAVNPISRTFTVNIGGQIQVLSNDRYKSVLHRAIVNCNKERISIPTIYCPSPDAMIGPAPHLINDM---LILPT  258 (286)
Q Consensus       182 ~~~g~W~~V~p~pg~~vVnvGd~L~~~TnG~~ks~~HRV~~~~~~~R~Si~~F~~P~~d~~i~pl~~~~~~~---~~~~~  258 (286)
                      +++|+|++|+|.||++|||+||+||+||||+|||++|||+.++.++|||++||+.|+.|++|+|++++++++   .|+++
T Consensus       253 ~~~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~~~p~~Y~~~  332 (357)
T PLN02216        253 KKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQKAALFKSL  332 (357)
T ss_pred             EECCEEEECCCCCCeEEEEcchhhHhhcCCeeeccCceeecCCCCCEEEEEEEecCCCCCeEeCcHHHcCCCCCCCCCCc
Confidence            999999999999999999999999999999999999999988888999999999999999999999998765   68999


Q ss_pred             cHHHHHHHHHhccCCCchhhh
Q 042088          259 TGTLHIASTTRNSGTGDLQLK  279 (286)
Q Consensus       259 t~~e~~~~~~~~~~~~~~~~~  279 (286)
                      |++||+..++.+...++..|.
T Consensus       333 t~~ey~~~~~~~~~~~~~~~~  353 (357)
T PLN02216        333 TTKEYFDGLFSRELDGKAYLD  353 (357)
T ss_pred             CHHHHHHHHHhcccCCcchhh
Confidence            999999999999888877663

>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-30
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 3e-30
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 4e-28
1w9y_A319 The Structure Of Acc Oxidase Length = 319 2e-26
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 3e-07
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 3e-05
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 4e-04
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 4e-04
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 140/311 (45%), Gaps = 73/311 (23%)
Query: 13  SSVSSIPSNYIRPASNRPNLDGVYLDDC------IPQIDLRYLNGSN---RSDVVKQTGQ 63
           S + SIP  YIRP     +++ V+L++       +P IDL+ +   +   R + +++  +
Sbjct: 13  SGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKK 72
Query: 64  ACQDYGFFRTENNGIPEEVMDKMLCLSRQFFHFP-------------------------- 97
           A  D+G     N+GIP ++M+++     +FF                             
Sbjct: 73  ASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANN 132
Query: 98  -------EDYVRLHCYPLE------------DYMH---EWAT----------NPQSFSLG 125
                  EDY     YP E            DY+    E+A              S  LG
Sbjct: 133 ASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLG 192
Query: 126 LERDYPIKALGNHGQ---HMAINYCPLCPQPELTYGLPCQTDPNVITILLQDDVPGLQVL 182
           LE D   K +G   +    M INY P CPQPEL  G+   TD + +T +L + VPGLQ+ 
Sbjct: 193 LEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLF 252
Query: 183 INGRWVAVNPISRTFTVNIGGQIQVLSNDRYKSVLHRAIVNCNKERISIPTIYC--PSPD 240
             G+WV    +  +  ++IG  +++LSN +YKS+LHR +VN  K RIS   ++C  P   
Sbjct: 253 YEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISW-AVFCEPPKDK 311
Query: 241 AMIGPAPHLIN 251
            ++ P P +++
Sbjct: 312 IVLKPLPEMVS 322
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 3e-96
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 8e-91
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 2e-53
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 5e-48
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 2e-45
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 6e-45
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  286 bits (734), Expect = 3e-96
 Identities = 85/313 (27%), Positives = 134/313 (42%), Gaps = 71/313 (22%)

Query: 11  VASSVSSIPSNYIRPASNRPNLDGVYLDDC------IPQIDLRYLNGSN---RSDVVKQT 61
             S + SIP  YIRP     +++ V+L++       +P IDL+ +   +   R + +++ 
Sbjct: 11  AKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEEL 70

Query: 62  GQACQDYGFFRTENNGIPEEVMDKMLCLSRQFFHFP------------------------ 97
            +A  D+G     N+GIP ++M+++     +FF                           
Sbjct: 71  KKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLA 130

Query: 98  ---------EDYVRLHCYPLEDY-MHEWATNPQSF------------------------S 123
                    EDY     YP E   +  W   P  +                         
Sbjct: 131 NNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVG 190

Query: 124 LGLERDYPIKALGNH---GQHMAINYCPLCPQPELTYGLPCQTDPNVITILLQDDVPGLQ 180
           LGLE D   K +G        M INY P CPQPEL  G+   TD + +T +L + VPGLQ
Sbjct: 191 LGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQ 250

Query: 181 VLINGRWVAVNPISRTFTVNIGGQIQVLSNDRYKSVLHRAIVNCNKERISIPTIYCPSPD 240
           +   G+WV    +  +  ++IG  +++LSN +YKS+LHR +VN  K RIS      P  D
Sbjct: 251 LFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKD 310

Query: 241 AM-IGPAPHLIND 252
            + + P P +++ 
Sbjct: 311 KIVLKPLPEMVSV 323
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 86.55
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 84.61
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 83.98
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 82.1
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 81.12
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=7.6e-70  Score=510.53  Aligned_cols=275  Identities=31%  Similarity=0.545  Sum_probs=240.1

Q ss_pred             CCchhHHHHhc-cCCCCCCcccCCCCCCCCCCC---CC---CCCCCceEeCCCCCCC---ChhHHHHHHHHHHhhcCeEE
Q 042088            3 FPNSLVFNVAS-SVSSIPSNYIRPASNRPNLDG---VY---LDDCIPQIDLRYLNGS---NRSDVVKQTGQACQDYGFFR   72 (286)
Q Consensus         3 ~~~~~v~~~~~-~~~~ip~~~~~p~~~~~~~~~---~~---~~~~iPvIDls~l~~~---~~~~~~~~l~~A~~~~Gff~   72 (286)
                      .|+++|++|++ ++.+||++|++|.++++....   ..   ...+||||||+.|.++   ++.+++++|.+||++|||||
T Consensus         2 ~~~~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~   81 (356)
T 1gp6_A            2 VAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMH   81 (356)
T ss_dssp             CCCCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEE
T ss_pred             CCcccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEE
Confidence            47889999999 899999999999877765321   00   1347999999998754   35678999999999999999


Q ss_pred             EEeCCCCHHHHHHHHHHHHHHhcCChhhhhhc-----------cCCC----------------------c-cccCcCCCC
Q 042088           73 TENNGIPEEVMDKMLCLSRQFFHFPEDYVRLH-----------CYPL----------------------E-DYMHEWATN  118 (286)
Q Consensus        73 l~nhGi~~~~~~~~~~~~~~fF~Lp~e~~~~~-----------~~p~----------------------~-~~~~~WP~~  118 (286)
                      |+||||+.++++++++.+++||+||.|.|...           |.+.                      . ..+|.||+.
T Consensus        82 v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~  161 (356)
T 1gp6_A           82 LINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKT  161 (356)
T ss_dssp             EESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCS
T ss_pred             EeCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCc
Confidence            99999999999999999999999999655321           1110                      0 015789998


Q ss_pred             Cccc------------------------cCCCCCChhHHhhc---CCCccceeeccCCCCCCCcccCcccccCCCcEEEE
Q 042088          119 PQSF------------------------SLGLERDYPIKALG---NHGQHMAINYCPLCPQPELTYGLPCQTDPNVITIL  171 (286)
Q Consensus       119 ~~~f------------------------~Lgl~~~~~~~~~~---~~~~~lrl~~Ypp~~~~~~~~g~~~HtD~~~lTlL  171 (286)
                      +++|                        +||+++++|.+.+.   .+.+.||++|||||++++..+|+++|||+|+||||
T Consensus       162 ~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL  241 (356)
T 1gp6_A          162 PSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI  241 (356)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEE
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEE
Confidence            8887                        89999999999887   46788999999999998889999999999999999


Q ss_pred             ecCCCCCeEEEECCeEEEEeecCCeEEEEechhHHHhhCCccccccceEeeCCCCceeeeEEeecCCCCC-eEecCCccc
Q 042088          172 LQDDVPGLQVLINGRWVAVNPISRTFTVNIGGQIQVLSNDRYKSVLHRAIVNCNKERISIPTIYCPSPDA-MIGPAPHLI  250 (286)
Q Consensus       172 ~qd~~~GLqV~~~g~W~~V~p~pg~~vVnvGd~L~~~TnG~~ks~~HRV~~~~~~~R~Si~~F~~P~~d~-~i~pl~~~~  250 (286)
                      +||+++||||+++|+|++|+|.||++|||+||+||+||||+|||++|||+.+++.+|||++||++|+.|+ +|+|+++++
T Consensus       242 ~qd~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~~~  321 (356)
T 1gp6_A          242 LHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMV  321 (356)
T ss_dssp             EECSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGC
T ss_pred             EEcCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCChhhc
Confidence            9999999999999999999999999999999999999999999999999998889999999999999999 999999999


Q ss_pred             ccC---CCCCccHHHHHHHHHhccCCCchh
Q 042088          251 NDM---LILPTTGTLHIASTTRNSGTGDLQ  277 (286)
Q Consensus       251 ~~~---~~~~~t~~e~~~~~~~~~~~~~~~  277 (286)
                      +++   +|+++|++||+..++.+..+|+.+
T Consensus       322 ~~~~p~~y~~~t~~eyl~~~~~~~~d~~~~  351 (356)
T 1gp6_A          322 SVESPAKFPPRTFAQHIEHKLFGKEQEELV  351 (356)
T ss_dssp             CSSSCCSSCCEEHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCCccCCCccHHHHHHHHHHhccCcchh
Confidence            865   689999999999999888766554
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 286
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 6e-43
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 8e-40
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 4e-30
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 2e-17
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 7e-09
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  148 bits (373), Expect = 6e-43
 Identities = 69/313 (22%), Positives = 120/313 (38%), Gaps = 71/313 (22%)

Query: 11  VASSVSSIPSNYIRPASNRPNLDGVYLDDC------IPQIDLRYLNGSN---RSDVVKQT 61
             S + SIP  YIRP     +++ V+L++       +P IDL+ +   +   R + +++ 
Sbjct: 10  AKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEEL 69

Query: 62  GQACQDYGFFRTENNGIPEEVMDKMLCLSRQFFHFPED---------------------- 99
            +A  D+G     N+GIP ++M+++     +FF    +                      
Sbjct: 70  KKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLA 129

Query: 100 -------------YVRLHCYPLEDYMHEWATNPQSFSLGLERDYPIKALGNHGQHMAINY 146
                        +   +     D      T         E    ++ L           
Sbjct: 130 NNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVG 189

Query: 147 CPLCP--------------------------QPELTYGLPCQTDPNVITILLQDDVPGLQ 180
             L P                          QPEL  G+   TD + +T +L + VPGLQ
Sbjct: 190 LGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQ 249

Query: 181 VLINGRWVAVNPISRTFTVNIGGQIQVLSNDRYKSVLHRAIVNCNKERISIPTIYCPSPD 240
           +   G+WV    +  +  ++IG  +++LSN +YKS+LHR +VN  K RIS      P  D
Sbjct: 250 LFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKD 309

Query: 241 AMI-GPAPHLIND 252
            ++  P P +++ 
Sbjct: 310 KIVLKPLPEMVSV 322
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 90.69
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.6e-68  Score=496.28  Aligned_cols=266  Identities=31%  Similarity=0.565  Sum_probs=235.0

Q ss_pred             chhHHHHhc-cCCCCCCcccCCCCCCCCCCC------CCCCCCCceEeCCCCCCC---ChhHHHHHHHHHHhhcCeEEEE
Q 042088            5 NSLVFNVAS-SVSSIPSNYIRPASNRPNLDG------VYLDDCIPQIDLRYLNGS---NRSDVVKQTGQACQDYGFFRTE   74 (286)
Q Consensus         5 ~~~v~~~~~-~~~~ip~~~~~p~~~~~~~~~------~~~~~~iPvIDls~l~~~---~~~~~~~~l~~A~~~~Gff~l~   74 (286)
                      +..|++|++ |+.+||.+|++|+++++.+..      ..+..+||||||+.|.++   .+++++++|.+||+++|||||+
T Consensus         3 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~   82 (349)
T d1gp6a_           3 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLI   82 (349)
T ss_dssp             CCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             CcchHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEE
Confidence            578999999 999999999999988876521      245678999999999765   4567899999999999999999


Q ss_pred             eCCCCHHHHHHHHHHHHHHhcCChhhhhhccC-----------C----------------------Ccc-ccCcCCCCCc
Q 042088           75 NNGIPEEVMDKMLCLSRQFFHFPEDYVRLHCY-----------P----------------------LED-YMHEWATNPQ  120 (286)
Q Consensus        75 nhGi~~~~~~~~~~~~~~fF~Lp~e~~~~~~~-----------p----------------------~~~-~~~~WP~~~~  120 (286)
                      ||||+.++++++++.+++||+||.|.|.....           .                      ... ..|.||+..+
T Consensus        83 nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~~  162 (349)
T d1gp6a_          83 NHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPS  162 (349)
T ss_dssp             SCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSST
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccccccc
Confidence            99999999999999999999999976543100           0                      000 1689998877


Q ss_pred             cc------------------------cCCCCCChhHHhhc---CCCccceeeccCCCCCCCcccCcccccCCCcEEEEec
Q 042088          121 SF------------------------SLGLERDYPIKALG---NHGQHMAINYCPLCPQPELTYGLPCQTDPNVITILLQ  173 (286)
Q Consensus       121 ~f------------------------~Lgl~~~~~~~~~~---~~~~~lrl~~Ypp~~~~~~~~g~~~HtD~~~lTlL~q  173 (286)
                      +|                        +||+++++|.+.+.   ...+.||++|||+++.+...+|+++|||+|+||||+|
T Consensus       163 ~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q  242 (349)
T d1gp6a_         163 DYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH  242 (349)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEEec
Confidence            76                        89999999988763   3567899999999999888999999999999999999


Q ss_pred             CCCCCeEEEECCeEEEEeecCCeEEEEechhHHHhhCCccccccceEeeCCCCceeeeEEeecCCCCCeE-ecCCccccc
Q 042088          174 DDVPGLQVLINGRWVAVNPISRTFTVNIGGQIQVLSNDRYKSVLHRAIVNCNKERISIPTIYCPSPDAMI-GPAPHLIND  252 (286)
Q Consensus       174 d~~~GLqV~~~g~W~~V~p~pg~~vVnvGd~L~~~TnG~~ks~~HRV~~~~~~~R~Si~~F~~P~~d~~i-~pl~~~~~~  252 (286)
                      +.++||||+++|+|++|+|.+|++|||+||+||+||||+||||+|||+.+++++|||++||++|+.|++| +|+++|+++
T Consensus       243 ~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~v~~  322 (349)
T d1gp6a_         243 NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSV  322 (349)
T ss_dssp             CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCCS
T ss_pred             cCCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHHcCC
Confidence            9999999999999999999999999999999999999999999999999988999999999999999865 899999987


Q ss_pred             C---CCCCccHHHHHHHHHhc
Q 042088          253 M---LILPTTGTLHIASTTRN  270 (286)
Q Consensus       253 ~---~~~~~t~~e~~~~~~~~  270 (286)
                      +   +|+++|++||+++|+..
T Consensus       323 ~~p~~y~~~t~~e~~~~rl~~  343 (349)
T d1gp6a_         323 ESPAKFPPRTFAQHIEHKLFG  343 (349)
T ss_dssp             SSCCSSCCEEHHHHHHHHHHH
T ss_pred             CCCCCCCCccHHHHHHHHHhc
Confidence            6   68999999999999854
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure